Citrus Sinensis ID: 036633

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550
Protein Sequence
MKEHKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTEGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRACERDLLSFI
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHcHHHHHHcccccHHHHHHHHHHHHHcccccccccccccccccEEEcccccccHHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHHHHHHHHHcccccEEEHHHHcccccHHHHHHHHHcccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHccccccccccccHHHHcccHHHHHHHccccccccEEEEccccccccHHHHccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHccHHHHHHccEEEcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEccHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccHHHHHHHHHHHHcccccccccEEEEEHHHHHHHHcHHHHHHHHHHHHHccccEEEEEHHHHHHcHHHHHHHHHHHHccccccccccccEEEcccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHEEHHccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEcHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MKEHKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIaqhprnkatGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYFLRRAVVEYEQLVkedtdhssrSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDfvscvhdakrvKDYSKILDQIDARVHGKFKEKLAVDVEEIAEVASKltgipaswfctkpeerYMRVQGRLKKRVFGQNDAIDVIFEALTkpkaakkglsSRRQLGLflfagpncsgKAELAKAIANElydnndndnhlihfdmgnyteLESIKHFFDSLAALvkkrpysvVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYgrvnevtgslfkpslLKLLDKLVVIDLAVPLLDTTRLLLREWACEETkrrnndskavivcpsTSALVHIASNAarkygqngeglkrwmdqrpsadHVIDKFLrdagynhqskeetedmeestelgggggggveywweesteglSLEELKKYMDSLEALRNNVAIKLEEMMMRRACERDLLSFI
Flexible Loop (DISEMBL)
MKEHKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAqhprnkatgelrERFIDILLKGIKRCLNSRDKYQKELDKHKYFLRRAVVEYEQLvkedtdhssrsfWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLAVDVEEIAEVaskltgipaswfctkpeERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRgiaafdltntLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACeetkrrnndskaviVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHqskeetedmeestelgggggGGVEYWWEESTEGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRACERDLLSFI
Low Complexity Region (SEG)
MKEHKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKAnssilnlllkilkTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSllklldklvvidlAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKeetedmeesteLgggggggVEYWWeesteglsleelKKYMDSLEALRNNVAIKLEEMMMRRACERDLLSFI
Disordered region (IsUnstruct)
******LVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKA****LSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYG*****L*RW*********VIDKFL*******************************YWWE*****L*LEELKKYMDSLEALRNNVAIKLEEMM*************
Disordered Region (DISOPRED)
*KEHKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYFLRRAVVEYE********************NE***************MQVEYDDFVSCVHDAKRVKDYSKILDQID************VDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG*SSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETE*************GGVEYWWEESTEGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRACERDLLSFI
Disordered Region (DISEMBL)
MKEHKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYFLRRAVVEYEQLV********RSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNH******************GGGGVEYWWEESTEGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRACERDLLSFI
Disordered Region (DISPRO)
MKEHKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHG*FKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVE********GLSLEELKKYMDSLEALRNNVAIKLEEMMMRRACERDLLSFI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKEHKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTEGLSxxxxxxxxxxxxxxxxxxxxxxxxMMMRRACERDLLSFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	550	2.2.26 [Sep-21-2011]
Q7CQ01	857	Chaperone protein ClpB OS	yes	no	0.650	0.417	0.292	4e-33
Q7AMH5	857	Chaperone protein ClpB OS	N/A	no	0.650	0.417	0.292	4e-33
Q8PHQ4	861	Chaperone protein ClpB OS	yes	no	0.650	0.415	0.292	5e-33
Q9PGC1	861	Chaperone protein ClpB OS	yes	no	0.649	0.414	0.289	7e-33
P42730	911	Chaperone protein ClpB1 O	yes	no	0.749	0.452	0.287	9e-33
Q7X2S8	854	Chaperone protein ClpB OS	yes	no	0.647	0.416	0.298	2e-32
Q9CKC0	855	Chaperone protein ClpB OS	yes	no	0.650	0.418	0.285	2e-32
Q87AX8	861	Chaperone protein ClpB OS	yes	no	0.649	0.414	0.287	4e-32
Q7UBW5	857	Chaperone protein ClpB OS	yes	no	0.658	0.422	0.291	4e-32
P63284	857	Chaperone protein ClpB OS	N/A	no	0.650	0.417	0.292	1e-31

>sp|Q7CQ01|CLPB_SALTY Chaperone protein ClpB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=clpB PE=3 SV=1

 Score =  143 bits (360), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 199/414 (48%), Gaps = 56/414 (13%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
           H +QI D A+  A+ ++   R  A  +L ++ ID++ +         D   +ELD+    
Sbjct: 361 HHVQITDPAIVAAATLSH--RYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRR 418

Query: 82  LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKD---AFFELVSFVKLR---------MQ 129
           + +  +E + L+KE  + S +   L  ++ EL D    + EL    K           ++
Sbjct: 419 IIQLKLEQQALMKESDEASKKR--LDMLNEELDDKERQYSELEEEWKAEKASLSGTQTIK 476

Query: 130 VEYDDFVSCVHDAKRVKD--------YSKILD---QIDARVHGKFKE----KLAVDVEEI 174
            E +     +  A+RV D        Y KI +   Q++A    + K     +  V   EI
Sbjct: 477 AELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQSEGKTMRLLRNKVTDAEI 536

Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
           AEV ++ TGIP S       E+ +R++  L  RV GQN+A++ +  A+ + +A   GLS 
Sbjct: 537 AEVLARWTGIPVSRMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRA---GLSD 593

Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
             R +G FLF GP   GK EL KA+AN ++   D+D+ ++  DM  + E  S+     + 
Sbjct: 594 PNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDDAMVRIDMSEFMEKHSVSRLVGAP 650

Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
                      L   V++RPYSV+L D++EKA+  + N+LL++L  D  R         D
Sbjct: 651 PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVD 708

Query: 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
             NT++IMTS+L  + + E      YGR+ E    V    F+P  +  +D++VV
Sbjct: 709 FRNTVVIMTSNLGSDLIQERFGELDYGRMKEMVLGVVSQNFRPEFINRIDEVVV 762

Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity). Required for colonization of the gastrointestinal tract, probably due to protection from a combination of stress factors.
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

>sp|Q7AMH5|CLPB_SALTI Chaperone protein ClpB OS=Salmonella typhi GN=clpB PE=3 SV=1

 Score =  143 bits (360), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 199/414 (48%), Gaps = 56/414 (13%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
           H +QI D A+  A+ ++   R  A  +L ++ ID++ +         D   +ELD+    
Sbjct: 361 HHVQITDPAIVAAATLSH--RYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRR 418

Query: 82  LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKD---AFFELVSFVKLR---------MQ 129
           + +  +E + L+KE  + S +   L  ++ EL D    + EL    K           ++
Sbjct: 419 IIQLKLEQQALMKESDEASKKR--LDMLNEELDDKERQYSELEEEWKAEKASLSGTQTIK 476

Query: 130 VEYDDFVSCVHDAKRVKD--------YSKILD---QIDARVHGKFKE----KLAVDVEEI 174
            E +     +  A+RV D        Y KI +   Q++A    + K     +  V   EI
Sbjct: 477 AELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQSEGKTMRLLRNKVTDAEI 536

Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
           AEV ++ TGIP S       E+ +R++  L  RV GQN+A++ +  A+ + +A   GLS 
Sbjct: 537 AEVLARWTGIPVSRMLEGEREKLLRMEQELHSRVIGQNEAVEAVSNAIRRSRA---GLSD 593

Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
             R +G FLF GP   GK EL KA+AN ++   D+D+ ++  DM  + E  S+     + 
Sbjct: 594 PNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDDAMVRIDMSEFMEKHSVSRLVGAP 650

Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
                      L   V++RPYSV+L D++EKA+  + N+LL++L  D  R         D
Sbjct: 651 PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVD 708

Query: 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
             NT++IMTS+L  + + E      YGR+ E    V    F+P  +  +D++VV
Sbjct: 709 FRNTVVIMTSNLGSDLIQERFGELDYGRMKEMVLGVVSQNFRPEFINRIDEVVV 762

Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK.

Salmonella typhi (taxid: 90370)

>sp|Q8PHQ4|CLPB_XANAC Chaperone protein ClpB OS=Xanthomonas axonopodis pv. citri (strain 306) GN=clpB PE=3 SV=2

 Score =  142 bits (359), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 122/417 (29%), Positives = 203/417 (48%), Gaps = 59/417 (14%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
           H ++I D A+  A+ ++   R     +L ++ ID++ +   R     D   +ELD+ +  
Sbjct: 361 HGVEITDPAIVAAATLSN--RYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERR 418

Query: 82  LRRAVVEYEQLVKEDTDHSSRSFWLRQID-NELKDAFFELVSF-----------VKLRMQ 129
           L +  ++ E L KE  D S +     + D ++L+  F++L               K++ Q
Sbjct: 419 LIQLKIQREMLKKEKDDASRQRLADLETDIDKLEREFYDLNELWKSEKAALQGTTKVKEQ 478

Query: 130 VEYDDFVSCVHDAKRVKDYSK-------ILDQIDARV-------HGKFK-EKLAVDVEEI 174
           +E+      +  A+R +DY+K       +L Q++ ++       H  FK  +  V  EEI
Sbjct: 479 IEHAKL--ELEAAQRRQDYAKMSEIQYGVLPQLEKQMALANEVEHHDFKLVQDRVTAEEI 536

Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
           AEV S+ TGIP +       ++ +R++  L  RV GQN+AI V+ +A+ + +A   GLS 
Sbjct: 537 AEVVSRWTGIPVNKMLEGERDKLLRMEDELHHRVVGQNEAIKVVSDAVRRSRA---GLSD 593

Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
             R  G FLF GP   GK EL KA+A+ L+D+ +    +I  DM  + E  S+     + 
Sbjct: 594 PNRPSGSFLFLGPTGVGKTELCKALADFLFDSTEA---MIRIDMSEFMEKHSVARLIGAP 650

Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
                      L   V++RPYS++L D++EKA+  + N+LL++L  D  R         D
Sbjct: 651 PGYVGYEEGGYLTEAVRRRPYSLILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVD 708

Query: 342 LTNTLIIMTSDLKDEQVYEV-------MLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
             NT+I+MTS+L   Q+ E+         T     V  V  + F+P  +  LD +VV
Sbjct: 709 FRNTVIVMTSNLGSHQIQELSGDDSAEAYTQMKAAVMGVVQAHFRPEFINRLDDIVV 765

Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK.

Xanthomonas axonopodis pv. citri (strain 306) (taxid: 190486)

>sp|Q9PGC1|CLPB_XYLFA Chaperone protein ClpB OS=Xylella fastidiosa (strain 9a5c) GN=clpB PE=3 SV=1

 Score =  142 bits (358), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 121/418 (28%), Positives = 198/418 (47%), Gaps = 61/418 (14%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
           H ++I D A+  A+ ++   R     +L ++ ID++ +   R     D   +ELD+ +  
Sbjct: 361 HGVEITDPAIVAAATLSN--RYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERR 418

Query: 82  LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFE------------LVSFVKLRMQ 129
           L +  ++ E L KE  + S +     + D E+ D  F             L    K++  
Sbjct: 419 LIQLKIQREMLKKEKDEASKQRLADLERDIEVLDREFSDLEEVWRSEKAALQGATKIKES 478

Query: 130 VEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLA----------------VDVEE 173
           +E       +  A+R +DY+K + +I   V    +++L                 V  EE
Sbjct: 479 IEQAKL--DLEAAQRRQDYAK-MSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEE 535

Query: 174 IAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS 233
           IAEV S+ TGIP S       ++ +R++  L +RV GQ +AI V+ +A+ +   ++ GLS
Sbjct: 536 IAEVVSRWTGIPVSKMLEGERDKLLRMEADLGRRVVGQEEAIKVVSDAVRR---SRTGLS 592

Query: 234 -SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS 292
              R  G FLF GP   GK EL KA+A  L+D+ D    ++  DM  + E  S+     +
Sbjct: 593 DPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDA---MVRIDMSEFMEKHSVARLIGA 649

Query: 293 ------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340
                       L  LV++RPYS++L D++EKA+S + N+LL++L  D  R         
Sbjct: 650 PPGYVGYEEGGYLTELVRRRPYSLILLDEVEKAHSDVFNILLQVL--DDGRLTDGQGRTV 707

Query: 341 DLTNTLIIMTSDLKDEQVYEV-------MLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
           D  NT+I+MTS+L   Q+ E+       + T     V EV  + F+P  +  LD +VV
Sbjct: 708 DFRNTVIVMTSNLGSHQIQELSGDDSPEVYTQMKAAVMEVVQAHFRPEFINRLDDIVV 765

Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK.

Xylella fastidiosa (taxid: 2371)

>sp|P42730|CLPB1_ARATH Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2

 Score =  142 bits (357), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 141/490 (28%), Positives = 231/490 (47%), Gaps = 78/490 (15%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
           H ++IQD AL  A++++   R      L ++ ID++ +    C N R   D   +E+D  
Sbjct: 362 HGVRIQDRALINAAQLSA--RYITGRHLPDKAIDLVDEA---CANVRVQLDSQPEEIDNL 416

Query: 79  KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVK---------LRM 128
           +    +  +E   L +E D    +R   +R+  ++L+D    L    +          R+
Sbjct: 417 ERKRMQLEIELHALEREKDKASKARLIEVRKELDDLRDKLQPLTMKYRKEKERIDEIRRL 476

Query: 129 QVEYDDFVSCVHDAKRVKDYSKILD----------QIDARVHGKFKEKLA-----VDVEE 173
           + + ++ +  + +A+R  D ++  D             A++ G   E+       V  E 
Sbjct: 477 KQKREELMFSLQEAERRYDLARAADLRYGAIQEVESAIAQLEGTSSEENVMLTENVGPEH 536

Query: 174 IAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS 233
           IAEV S+ TGIP +      +ER + +  RL KRV GQN A++ + EA+ + +A   GL 
Sbjct: 537 IAEVVSRWTGIPVTRLGQNEKERLIGLADRLHKRVVGQNQAVNAVSEAILRSRA---GLG 593

Query: 234 SRRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS 292
             +Q  G FLF GP   GK ELAKA+A +L+   D++N L+  DM  Y E  S+     +
Sbjct: 594 RPQQPTGSFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVSRLIGA 650

Query: 293 ------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340
                       L   V++RPY V+LFD++EKA+ ++ N LL++L  D  R         
Sbjct: 651 PPGYVGHEEGGQLTEAVRRRPYCVILFDEVEKAHVAVFNTLLQVL--DDGRLTDGQGRTV 708

Query: 341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVN-EVTGSL--------FKPSLLKLLDKLVV 391
           D  N++IIMTS+L  E     +L    G+V  EV            F+P LL  LD++VV
Sbjct: 709 DFRNSVIIMTSNLGAEH----LLAGLTGKVTMEVARDCVMREVRKHFRPELLNRLDEIVV 764

Query: 392 IDLAV--PLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI-ASNAARKYGQNG 448
            D      L    RL +++ A    +R       V +  + +AL +I A +    YG   
Sbjct: 765 FDPLSHDQLRKVARLQMKDVAVRLAER------GVALAVTDAALDYILAESYDPVYG--A 816

Query: 449 EGLKRWMDQR 458
             ++RWM+++
Sbjct: 817 RPIRRWMEKK 826

Molecular chaperone that plays an important role in thermotolerance. Required for acquired thermotolerance in plants and naturally high basal thermotolerance observed in germinating seedlings.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7X2S8|CLPB_MEIRU Chaperone protein ClpB OS=Meiothermus ruber GN=clpB PE=3 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 203/416 (48%), Gaps = 60/416 (14%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKR---CLNSRDKYQKELDKH 78
           H ++I D AL  A++++   R  A  +L ++ ID++ +   R    L S  +    L++ 
Sbjct: 352 HGVRISDPALIAAAQLSH--RYIADRKLPDKAIDLVDEAAARLRMALESSPESIDALNRR 409

Query: 79  KYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVS-----------FVKLR 127
           K  L    +E E L KE TD  S+ F L +++ E+ D   E+               KLR
Sbjct: 410 KLQLE---IEREALKKE-TDAESK-FRLGELEKEIADLEEEIRKQQAEWEAEREIMQKLR 464

Query: 128 M-QVEYDDFVSCVHDAKRVKDYSKI--------------LDQIDARVHGKFKEKLAVDVE 172
             Q   D+  + +  A+R  D +K               ++++  R+ G    +  V  E
Sbjct: 465 AAQQRLDEVRTQIEQAERAYDLNKAAPLRYGELPKLEQEVNELADRMAGAQFVRPMVTEE 524

Query: 173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
           +IA + S+ TGIP +       E+ +R++  L KRV GQ++AI  + +A+ + +A  K  
Sbjct: 525 DIAAIVSRWTGIPVAKLMEGEREKLLRLEDELHKRVVGQDEAIVAVADAIRRARAGLK-- 582

Query: 233 SSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS 292
              R +G FLF GP   GK ELAK +A  L+D  +N   ++  DM  Y E  ++     +
Sbjct: 583 DPNRPIGSFLFLGPTGVGKTELAKTLAASLFDTEEN---MVRIDMSEYQEKHTVARLIGA 639

Query: 293 ------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340
                       L   V++RPYSV+LFD+IEKA+  + N+LL++L  D  R         
Sbjct: 640 PPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVLLQVL--DDGRLTDGQGRTV 697

Query: 341 DLTNTLIIMTSDLKDEQVYEVMLTA-TYGRVNE-VTGSL---FKPSLLKLLDKLVV 391
           D  NT+II+TS++    ++E + +  +Y  + E V G L   F+P  L  LD++VV
Sbjct: 698 DFRNTVIILTSNIGSPLIFEGIQSGQSYETIRERVFGVLQQHFRPEFLNRLDEIVV 753

Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK.

Meiothermus ruber (taxid: 277)

>sp|Q9CKC0|CLPB_PASMU Chaperone protein ClpB OS=Pasteurella multocida (strain Pm70) GN=clpB PE=3 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 199/413 (48%), Gaps = 55/413 (13%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
           H +QI D A+  A+ ++   R  +  +L ++ ID++ +         D   + LD+ +  
Sbjct: 360 HHVQITDPAIVAAATLSH--RYVSDRQLPDKAIDLIDEAASSIRMEIDSKPQPLDRLERR 417

Query: 82  LRRAVVEYEQLVKEDTDHSSRSFWLRQID-NELKDAFFELVSFVKL---------RMQVE 131
           + +  +E + L KED D S +   + + +  E +  + EL    K           ++ E
Sbjct: 418 IIQLKLEQQALQKEDDDASRKRLAMLEKELGEKEREYAELEDVWKAEKAALSGTQHIKAE 477

Query: 132 YDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLA----------------VDVEEIA 175
            D   + +  A+R  D++K + ++   V    +++LA                V  EEIA
Sbjct: 478 LDSAKTQMEQARRASDFAK-MSELQYGVIPALEKQLAQAESAEGKEMTLLRYRVTDEEIA 536

Query: 176 EVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS-S 234
           EV S+ TGIP +      +E+ +R++  L KRV GQ++AI+ +  A+ + +A   GLS  
Sbjct: 537 EVLSRATGIPVAKMMEGEKEKLLRMEEELHKRVIGQHEAIEAVSNAIRRSRA---GLSDP 593

Query: 235 RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS-- 292
            R +G FLF GP   GK EL K +AN L+   D++N ++  DM  + E  S+     +  
Sbjct: 594 NRPIGSFLFLGPTGVGKTELCKTLANFLF---DDENAMVRIDMSEFMEKHSVSRLVGAPP 650

Query: 293 ----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL 342
                     L   V++RPYSV+L D++EKA+  + N+LL++L  D  R         D 
Sbjct: 651 GYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHHDVFNILLQVL--DDGRLTDGQGRTVDF 708

Query: 343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
            NT++IMTS+L    + E   T  Y  + E    V G  F+P  +  +D+ VV
Sbjct: 709 RNTVVIMTSNLGSHLIQENS-TLDYPSMKELVMSVVGQHFRPEFINRIDETVV 760

Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK.

Pasteurella multocida (strain Pm70) (taxid: 272843)

>sp|Q87AX8|CLPB_XYLFT Chaperone protein ClpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1

 Score =  140 bits (352), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 198/418 (47%), Gaps = 61/418 (14%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
           H ++I D A+  A+ ++   R     +L ++ ID++ +   R     D   +ELD+ +  
Sbjct: 361 HGVEITDPAIVAAATLSN--RYITDRQLPDKAIDLMDEAASRIRMEIDSKPEELDRLERR 418

Query: 82  LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFE------------LVSFVKLRMQ 129
           L +  ++ E L KE  + S +     + D E+ D  F             L    K++  
Sbjct: 419 LIQLKIQREMLKKEKDEASKQRLVDLERDIEVLDREFSDLEEVWRSEKAALQGATKIKES 478

Query: 130 VEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLA----------------VDVEE 173
           +E       +  A+R +DY+K + +I   V    +++L                 V  EE
Sbjct: 479 IEQAKL--DLEAAQRRQDYAK-MSEIQYGVLPALEKQLVAASQAEQHDFTLVQEKVTAEE 535

Query: 174 IAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS 233
           IAEV S+ TGIP S       ++ +R++  L +RV GQ++AI V+ +A+ +   ++ GLS
Sbjct: 536 IAEVVSRWTGIPVSKMLEGERDKLLRMEADLGRRVVGQDEAIKVVSDAVRR---SRTGLS 592

Query: 234 -SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS 292
              R  G FLF GP   GK EL KA+A  L+D+ D    ++  DM  + E  S+     +
Sbjct: 593 DPNRPSGSFLFLGPTGVGKTELCKALAEFLFDSQDA---MVRIDMSEFMEKHSVARLIGA 649

Query: 293 ------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340
                       L  LV++RPYS++L D++EKA+S + N+LL++L  D  R         
Sbjct: 650 PPGYVGYEEGGYLTELVRRRPYSLILLDEVEKAHSDVFNILLQVL--DDGRLTDGQGRTV 707

Query: 341 DLTNTLIIMTSDLKDEQVYEV-------MLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
           D  NT+I+MTS+L   Q+ E+       + T     V  V  + F+P  +  LD +VV
Sbjct: 708 DFRNTVIVMTSNLGSHQIQELSGDDSPEVYTQMKAAVMGVVQAHFRPEFINRLDDIVV 765

Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK.

Xylella fastidiosa (strain Temecula1 / ATCC 700964) (taxid: 183190)

>sp|Q7UBW5|CLPB_SHIFL Chaperone protein ClpB OS=Shigella flexneri GN=clpB PE=3 SV=2

 Score =  139 bits (351), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 122/418 (29%), Positives = 200/418 (47%), Gaps = 56/418 (13%)

Query: 18  LEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDK 77
            E +H +QI D A+  A+ ++   R  A  +L ++ ID++ +         D   +ELD+
Sbjct: 357 FELLHHVQITDPAIVAAATLSH--RYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDR 414

Query: 78  HKYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKD---AFFELVSFVKLR------- 127
               + +  +E + L+KE  + S +   L  ++ EL D    + EL    K         
Sbjct: 415 LDRRIIQLKLEQQALMKESDEASKKR--LDMLNEELSDKERQYSELEEEWKAEKASLSGT 472

Query: 128 --MQVEYDDFVSCVHDAKRVKD--------YSKILD---QIDA--RVHGKFKEKL--AVD 170
             ++ E +     +  A+RV D        Y KI +   Q++A  ++ GK    L   V 
Sbjct: 473 QTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVT 532

Query: 171 VEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKK 230
             EIAEV ++ TGIP S       E+ +R++  L  RV GQN+A+D +  A+ + +A   
Sbjct: 533 DAEIAEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRA--- 589

Query: 231 GLS-SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF 289
           GL+   R +G FLF GP   GK EL KA+AN ++   D+D  ++  DM  + E  S+   
Sbjct: 590 GLADPNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDEAMVRIDMSEFMEKHSVSRL 646

Query: 290 FDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGI 337
             +            L   V++RPYSV+L D++EKA+  + N+LL++L  D  R      
Sbjct: 647 VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQG 704

Query: 338 AAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
              D  NT++IMTS+L  + + E      Y  + E    V    F+P  +  +D++VV
Sbjct: 705 RTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVV 762

Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK.

Shigella flexneri (taxid: 623)

>sp|P63284|CLPB_ECOLI Chaperone protein ClpB OS=Escherichia coli (strain K12) GN=clpB PE=1 SV=1

 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 198/414 (47%), Gaps = 56/414 (13%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYF 81
           H +QI D A+  A+ ++   R  A  +L ++ ID++ +         D   +ELD+    
Sbjct: 361 HHVQITDPAIVAAATLSH--RYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRR 418

Query: 82  LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKD---AFFELVSFVKLR---------MQ 129
           + +  +E + L+KE  + S +   L  ++ EL D    + EL    K           ++
Sbjct: 419 IIQLKLEQQALMKESDEASKKR--LDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIK 476

Query: 130 VEYDDFVSCVHDAKRVKD--------YSKILD---QIDA--RVHGKFKEKL--AVDVEEI 174
            E +     +  A+RV D        Y KI +   Q++A  ++ GK    L   V   EI
Sbjct: 477 AELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEI 536

Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS- 233
           AEV ++ TGIP S       E+ +R++  L  RV GQN+A+D +  A+ + +A   GL+ 
Sbjct: 537 AEVLARWTGIPVSRMMESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRA---GLAD 593

Query: 234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
             R +G FLF GP   GK EL KA+AN ++   D+D  ++  DM  + E  S+     + 
Sbjct: 594 PNRPIGSFLFLGPTGVGKTELCKALANFMF---DSDEAMVRIDMSEFMEKHSVSRLVGAP 650

Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
                      L   V++RPYSV+L D++EKA+  + N+LL++L  D  R         D
Sbjct: 651 PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVD 708

Query: 342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKPSLLKLLDKLVV 391
             NT++IMTS+L  + + E      Y  + E    V    F+P  +  +D++VV
Sbjct: 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVV 762

Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK.

Escherichia coli (strain K12) (taxid: 83333)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	550
449439307	908	PREDICTED: chaperone protein ClpB1-like	0.747	0.452	0.3	3e-35
351725607	911	heat shock protein [Glycine max] gi|5302	0.756	0.456	0.290	8e-35
297733886	881	unnamed protein product [Vitis vinifera]	0.756	0.472	0.292	1e-33
59805048	911	heat shock protein 101 [Vitis vinifera]	0.756	0.456	0.292	1e-33
225457237	911	PREDICTED: chaperone protein ClpB1 [Viti	0.756	0.456	0.292	1e-33
110623253	917	heat shock protein 101 [Triticum durum]	0.745	0.447	0.305	2e-33
254952729	911	heat shock protein [Vitis labrusca x Vit	0.756	0.456	0.290	5e-33
147811710	906	hypothetical protein VITISV_012280 [Viti	0.747	0.453	0.288	5e-33
4558484	918	heat shock protein 101 [Triticum aestivu	0.745	0.446	0.303	7e-33
326531902	916	predicted protein [Hordeum vulgare subsp	0.745	0.447	0.303	8e-33

>gi|449439307|ref|XP_004137427.1| PREDICTED: chaperone protein ClpB1-like [Cucumis sativus] gi|449486952|ref|XP_004157452.1| PREDICTED: chaperone protein ClpB1-like [Cucumis sativus]

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 147/490 (30%), Positives = 233/490 (47%), Gaps = 79/490 (16%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
           H ++IQD AL +A++++   R      L ++ ID++ +    C N R   D   +E+D  
Sbjct: 362 HGVRIQDRALVVAAQLSS--RYITGRHLPDKAIDLVDEA---CANVRVQLDSQPEEIDNL 416

Query: 79  KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVS 137
           +    +  VE   L KE D    +R   +R+  ++L+D    L   +K R + E  D + 
Sbjct: 417 ERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPL--LMKYRKEKERIDEIR 474

Query: 138 -----------CVHDAKRVKDYSKILD----------QIDARVHGKFKEKL----AVDVE 172
                       + +A+R  D ++  D             AR+ G   E L     V  E
Sbjct: 475 RLKQRREELQIALQEAERRYDLARAADLRYGAIQEVESAIARIEGNTDENLMLTETVGPE 534

Query: 173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
           ++AEV S+ TGIP +      +ER + +  RL KRV GQN A+D + EA+ + +A   GL
Sbjct: 535 QVAEVVSRWTGIPVTRLGQNDKERLVGLADRLHKRVVGQNQAVDAVAEAVLRSRA---GL 591

Query: 233 SSRRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
              +Q  G FLF GP   GK ELAKA+A +L+   D++N L+  DM  Y E  S+     
Sbjct: 592 GRPQQPTGSFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVSRLIG 648

Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
           +            L   V++RPYSV+LFD++EKA+ ++ N LL++L  D  R        
Sbjct: 649 APPGYVGHEEGGQLTEAVRRRPYSVILFDEVEKAHIAVFNTLLQVL--DDGRLTDGQGRT 706

Query: 340 FDLTNTLIIMTSDLKDEQVY-----EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDL 394
            D  NT+IIMTS+L  E +      +  +     RV +     F+P LL  LD++VV D 
Sbjct: 707 VDFRNTVIIMTSNLGAEHLLAGLMGKCTMQVARDRVMQEVRKHFRPELLNRLDEIVVFD- 765

Query: 395 AVP-----LLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI-ASNAARKYGQNG 448
             P     L    RL +++ A    +R       V +  + +AL ++ A +    YG   
Sbjct: 766 --PLSHEQLRKVARLQMKDVAARLAER------GVALAVTDAALDYVLAESYDPVYG--A 815

Query: 449 EGLKRWMDQR 458
             ++RW+++R
Sbjct: 816 RPIRRWLEKR 825

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725607|ref|NP_001238122.1| heat shock protein [Glycine max] gi|530207|gb|AAA66338.1| heat shock protein [Glycine max]

 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 236/485 (48%), Gaps = 69/485 (14%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
           H ++IQD AL +A++++   R      L ++ ID++ +    C N R   D   +E+D  
Sbjct: 363 HGVRIQDRALVMAAQLSN--RYITGRHLPDKAIDLVDEA---CANVRVQLDSQPEEIDNL 417

Query: 79  KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVK---------LRM 128
           +    +  VE   L KE D    +R   +R+  ++L+D    L+   +          R+
Sbjct: 418 ERKRMQLEVELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMKYRKEKERVDEIRRL 477

Query: 129 QVEYDDFVSCVHDAKRVKDYSKILD-------QIDARVH---GKFKEKL----AVDVEEI 174
           + + ++ +  + +A+R  D ++  D       +++  +    G  +E L     V  E+I
Sbjct: 478 KKKREELLFALQEAERRYDLARAADLRYGAIQEVETAIQQLEGSTEENLMLTETVGPEQI 537

Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS 234
           AEV S+ TGIP +      +ER + +  RL  RV GQ+ A++ + EA+ + +A   GL  
Sbjct: 538 AEVVSRWTGIPVTRLGQNEKERLIGLGDRLHSRVVGQDQAVNAVAEAVLRSRA---GLGR 594

Query: 235 RRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
            +Q  G FLF GP   GK ELAKA+A +L+   DN+N L+  DM  Y E  S+     + 
Sbjct: 595 PQQPTGSFLFLGPTGVGKTELAKALAEQLF---DNENQLVRIDMSEYMEQHSVSRLIGAP 651

Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
                      L   V++RPYSVVLFD++EKA++S+ N LL++L  D  R         D
Sbjct: 652 PGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHTSVFNTLLQVL--DDGRLTDGQGRTVD 709

Query: 342 LTNTLIIMTSDLKDEQVY-----EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAV 396
             NT+IIMTS+L  E +      +  +     RV +     F+P LL  LD++VV D   
Sbjct: 710 FRNTVIIMTSNLGAEHLLSGLSGKCTMQVARDRVMQEVRRQFRPELLNRLDEIVVFDPLS 769

Query: 397 --PLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARK-YGQNGEGLKR 453
              L    RL +++ A    +      K + +  + +AL +I S +    YG     ++R
Sbjct: 770 HDQLRKVARLQMKDVASRLAE------KGIALAVTDAALDYILSESYDPVYG--ARPIRR 821

Query: 454 WMDQR 458
           W++++
Sbjct: 822 WLEKK 826

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733886|emb|CBI15133.3| unnamed protein product [Vitis vinifera]

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 142/485 (29%), Positives = 236/485 (48%), Gaps = 69/485 (14%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
           H ++IQD AL +A++++   R      L ++ ID++ +    C N R   D   +E+D  
Sbjct: 333 HGVRIQDRALVVAAQLSS--RYITGRHLPDKAIDLVDEA---CANVRVQLDSQPEEIDNL 387

Query: 79  KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVK---------LRM 128
           +    +  VE   L KE D    +R   +R+  ++L+D    L+   K          R+
Sbjct: 388 ERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLMMKYKKEKERIDELRRL 447

Query: 129 QVEYDDFVSCVHDAKRVKDYSKILD-------QIDARV---HGKFKEKL----AVDVEEI 174
           + + ++ +  + +A+R  D ++  D       +++A +    G   E +     V  E+I
Sbjct: 448 KQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIANLEGTTDENMMLTETVGPEQI 507

Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS 234
           AEV S+ TGIP +      +ER + +  RL +RV GQ+ A+  + EA+ + +A   GL  
Sbjct: 508 AEVVSRWTGIPVTRLGQNDKERLIGLAERLHQRVVGQDQAVSAVAEAVLRSRA---GLGR 564

Query: 235 RRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
            +Q  G FLF GP   GK ELAKA+A +L+   D++N L+  DM  Y E  S+     + 
Sbjct: 565 PQQPTGSFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVSRLIGAP 621

Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
                      L   V++RPYSVVLFD++EKA+ ++ N LL++L  D  R         D
Sbjct: 622 PGYVGHDEGGQLTEAVRRRPYSVVLFDEVEKAHIAVFNTLLQVL--DDGRLTDGQGRTVD 679

Query: 342 LTNTLIIMTSDLKDEQ-----VYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAV 396
            TNT+IIMTS+L  E      V +  +     RV +     F+P LL  LD++VV D   
Sbjct: 680 FTNTVIIMTSNLGAEHLLSGLVGKCTMQDARDRVMQEVRRHFRPELLNRLDEIVVFDPLS 739

Query: 397 --PLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL-VHIASNAARKYGQNGEGLKR 453
              L    RL +++ A    +R       + +  + +AL V +A +    YG     ++R
Sbjct: 740 HDQLRKVARLQMKDVASRLAER------GIALAVTDAALDVVLAESYDPVYG--ARPIRR 791

Query: 454 WMDQR 458
           W++++
Sbjct: 792 WLEKK 796

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|59805048|gb|AAX08108.1| heat shock protein 101 [Vitis vinifera]

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 142/485 (29%), Positives = 236/485 (48%), Gaps = 69/485 (14%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
           H ++IQD AL +A++++   R      L ++ ID++ +    C N R   D   +E+D  
Sbjct: 363 HGVRIQDRALVVAAQLSS--RYITGRHLPDKAIDLVDEA---CANVRVQLDSQPEEIDNL 417

Query: 79  KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVK---------LRM 128
           +    +  VE   L KE D    +R   +R+  ++L+D    L+   K          R+
Sbjct: 418 ERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLMMKYKKEKERIDELRRL 477

Query: 129 QVEYDDFVSCVHDAKRVKDYSKILD-------QIDARV---HGKFKEKL----AVDVEEI 174
           + + ++ +  + +A+R  D ++  D       +++A +    G   E +     V  E+I
Sbjct: 478 KQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIANLEGTTDENMMLTETVGPEQI 537

Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS 234
           AEV S+ TGIP +      +ER + +  RL +RV GQ+ A+  + EA+ + +A   GL  
Sbjct: 538 AEVVSRWTGIPVTRLGQNDKERLIGLAERLHQRVVGQDQAVSAVAEAVLRSRA---GLGR 594

Query: 235 RRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
            +Q  G FLF GP   GK ELAKA+A +L+   D++N L+  DM  Y E  S+     + 
Sbjct: 595 PQQPTGSFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVSRLIGAP 651

Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
                      L   V++RPYSVVLFD++EKA+ ++ N LL++L  D  R         D
Sbjct: 652 PGYVGHDEGGQLTEAVRRRPYSVVLFDEVEKAHIAVFNTLLQVL--DDGRLTDGQGRTVD 709

Query: 342 LTNTLIIMTSDLKDEQ-----VYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAV 396
            TNT+IIMTS+L  E      V +  +     RV +     F+P LL  LD++VV D   
Sbjct: 710 FTNTVIIMTSNLGAEHLLSGLVGKCTMQDARDRVMQEVRRHFRPELLNRLDEIVVFDPLS 769

Query: 397 --PLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL-VHIASNAARKYGQNGEGLKR 453
              L    RL +++ A    +R       + +  + +AL V +A +    YG     ++R
Sbjct: 770 HDQLRKVARLQMKDVASRLAER------GIALAVTDAALDVVLAESYDPVYG--ARPIRR 821

Query: 454 WMDQR 458
           W++++
Sbjct: 822 WLEKK 826

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457237|ref|XP_002284179.1| PREDICTED: chaperone protein ClpB1 [Vitis vinifera]

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 142/485 (29%), Positives = 236/485 (48%), Gaps = 69/485 (14%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
           H ++IQD AL +A++++   R      L ++ ID++ +    C N R   D   +E+D  
Sbjct: 363 HGVRIQDRALVVAAQLSS--RYITGRHLPDKAIDLVDEA---CANVRVQLDSQPEEIDNL 417

Query: 79  KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVK---------LRM 128
           +    +  VE   L KE D    +R   +R+  ++L+D    L+   K          R+
Sbjct: 418 ERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLMMKYKKEKERIDELRRL 477

Query: 129 QVEYDDFVSCVHDAKRVKDYSKILD-------QIDARV---HGKFKEKL----AVDVEEI 174
           + + ++ +  + +A+R  D ++  D       +++A +    G   E +     V  E+I
Sbjct: 478 KQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIANLEGTTDENMMLTETVGPEQI 537

Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS 234
           AEV S+ TGIP +      +ER + +  RL +RV GQ+ A+  + EA+ + +A   GL  
Sbjct: 538 AEVVSRWTGIPVTRLGQNDKERLIGLAERLHQRVVGQDQAVSAVAEAVLRSRA---GLGR 594

Query: 235 RRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
            +Q  G FLF GP   GK ELAKA+A +L+   D++N L+  DM  Y E  S+     + 
Sbjct: 595 PQQPTGSFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVSRLIGAP 651

Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
                      L   V++RPYSVVLFD++EKA+ ++ N LL++L  D  R         D
Sbjct: 652 PGYVGHDEGGQLTEAVRRRPYSVVLFDEVEKAHIAVFNTLLQVL--DDGRLTDGQGRTVD 709

Query: 342 LTNTLIIMTSDLKDEQ-----VYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAV 396
            TNT+IIMTS+L  E      V +  +     RV +     F+P LL  LD++VV D   
Sbjct: 710 FTNTVIIMTSNLGAEHLLSGLVGKCTMQDARDRVMQEVRRHFRPELLNRLDEIVVFDPLS 769

Query: 397 --PLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL-VHIASNAARKYGQNGEGLKR 453
              L    RL +++ A    +R       + +  + +AL V +A +    YG     ++R
Sbjct: 770 HDQLRKVARLQMKDVASRLAER------GIALAVTDAALDVVLAESYDPVYG--ARPIRR 821

Query: 454 WMDQR 458
           W++++
Sbjct: 822 WLEKK 826

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110623253|emb|CAI94865.2| heat shock protein 101 [Triticum durum]

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 150/491 (30%), Positives = 237/491 (48%), Gaps = 81/491 (16%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
           H ++IQD A+ +A++++   R      L ++ ID++ +    C N R   D   +E+D  
Sbjct: 365 HGVRIQDRAIVVAAQLSA--RYIMGRHLPDKAIDLVDEA---CANVRVQLDSQPEEIDNL 419

Query: 79  KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVS 137
           +    +  VE   L KE D    +R   +R+  ++L+D    L   +K R + E  D + 
Sbjct: 420 ERKRIQLEVELHALEKEKDKASKARLVEVRKELDDLRDKLQPLT--MKYRKEKERIDEIR 477

Query: 138 -----------CVHDAKRVKDYSKILD-------QIDA---RVHGKFKEKL----AVDVE 172
                       + +A+R  D +++ D       +IDA   ++ G+  E L     V  E
Sbjct: 478 KLKQRREELQFTLQEAERRMDLARVADLKYGALQEIDAAIAKLEGETGENLMLTETVGPE 537

Query: 173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
           +IAEV S+ TGIP +      +ER + +  RL  RV GQ +A++ + EA+ + +A   GL
Sbjct: 538 QIAEVVSRWTGIPVTRLGQNDKERLVGMADRLHTRVVGQTEAVNAVAEAVLRSRA---GL 594

Query: 233 SSRRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
              +Q  G FLF GP   GK ELAKA+A +L+   D++N L+  DM  Y E  S+     
Sbjct: 595 GRPQQPTGSFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVARLIG 651

Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
           +            L   V++RPYSV+LFD++EKA+ ++ N LL++L  D  R        
Sbjct: 652 APPGYVGHEEGGQLTEQVRRRPYSVILFDEVEKAHVAVFNTLLQVL--DDGRLTDGQGRT 709

Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRV------NEVTGSLFKPSLLKLLDKLVVID 393
            D  NT+IIMTS+L  E +   M+     +V       EV    F+P LL  LD++VV D
Sbjct: 710 VDFRNTVIIMTSNLGAEHLLAGMVGKNSMKVARDLVMQEVR-RHFRPELLNRLDEIVVFD 768

Query: 394 LAVP-----LLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARK-YGQN 447
              P     L    RL +R+ A    +R       V +  + +AL  I S A    YG  
Sbjct: 769 ---PLSHEQLRKVARLQMRDVAVRLAER------GVALAVTDAALDVILSLAYDPVYG-- 817

Query: 448 GEGLKRWMDQR 458
              ++RW+++R
Sbjct: 818 ARPIRRWIEKR 828

Source: Triticum durum

Species: Triticum durum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254952729|gb|ACT97165.1| heat shock protein [Vitis labrusca x Vitis vinifera]

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 236/485 (48%), Gaps = 69/485 (14%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
           H ++IQD AL +A++++   R      L ++ ID++ +    C N R   D   +E+D  
Sbjct: 363 HGVRIQDRALVVAAQLSS--RYITGRHLPDKAIDLVDEA---CANVRVQLDSQPEEIDNL 417

Query: 79  KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVK---------LRM 128
           +    +  VE   L KE D    +R   +R+  ++L+D    L+   K          R+
Sbjct: 418 ERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLMMKYKKEKERIDELRRL 477

Query: 129 QVEYDDFVSCVHDAKRVKDYSKILD-------QIDARV---HGKFKEKL----AVDVEEI 174
           + + ++ +  + +A+R  D ++  D       +++A +    G   E +     V  E+I
Sbjct: 478 KQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIANLEGTTDENMMLTETVGPEQI 537

Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS 234
           AEV S+ TGIP +      +ER + +  RL +RV GQ+ A+  + EA+ +   ++ GL  
Sbjct: 538 AEVVSRWTGIPVTRLGQNDKERLIGLAERLHQRVVGQDQAVSAVAEAVLR---SRVGLGR 594

Query: 235 RRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
            +Q  G FLF GP   GK ELAKA+A +L+   D++N L+  DM  Y E  S+     + 
Sbjct: 595 PQQPTGSFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVSRLIGAP 651

Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
                      L   V++RPYSVVLFD++EKA+ ++ N LL++L  D  R         D
Sbjct: 652 PGYVGHDEGGQLTEAVRRRPYSVVLFDEVEKAHIAVFNTLLQVL--DDGRLTDGQGRTVD 709

Query: 342 LTNTLIIMTSDLKDEQ-----VYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAV 396
            TNT+IIMTS+L  E      V +  +     RV +     F+P LL  LD++VV D   
Sbjct: 710 FTNTVIIMTSNLGAEHLLSGLVGKCTMQDARDRVMQEVRRHFRPELLNRLDEIVVFDPLS 769

Query: 397 --PLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL-VHIASNAARKYGQNGEGLKR 453
              L    RL +++ A    +R       + +  + +AL V +A +    YG     ++R
Sbjct: 770 HDQLRKVARLQMKDVASRLAER------GIALAVTDAALDVVLAESYDPVYG--ARPIRR 821

Query: 454 WMDQR 458
           W++++
Sbjct: 822 WLEKK 826

Source: Vitis labrusca x Vitis vinifera

Species: Vitis labrusca x Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147811710|emb|CAN72669.1| hypothetical protein VITISV_012280 [Vitis vinifera]

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 140/485 (28%), Positives = 235/485 (48%), Gaps = 74/485 (15%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
           H ++IQD AL +A++++          + ++ ID++ +    C N R   D   +E+D  
Sbjct: 363 HGVRIQDRALVVAAQLSSR-------YITDKAIDLVDEA---CANVRVQLDSQPEEIDNL 412

Query: 79  KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVK---------LRM 128
           +    +  VE   L KE D    +R   +R+  ++L+D    L+   K          R+
Sbjct: 413 ERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLMMKYKKEKERIDELRRL 472

Query: 129 QVEYDDFVSCVHDAKRVKDYSKILD-------QIDARV---HGKFKEKL----AVDVEEI 174
           + + ++ +  + +A+R  D ++  D       +++A +    G   E +     V  E+I
Sbjct: 473 KQKREELLFALQEAERRYDLARAADLRYGAIQEVEAAIANLEGTTDENMMLTETVGPEQI 532

Query: 175 AEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS 234
           AEV S+ TGIP +      +ER + +  RL +RV GQ+ A+  + EA+ + +A   GL  
Sbjct: 533 AEVVSRWTGIPVTRLGQNDKERLIGLAERLHQRVVGQDQAVSAVAEAVLRSRA---GLGR 589

Query: 235 RRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS- 292
            +Q  G FLF GP   GK ELAKA+A +L+   D++N L+  DM  Y E  S+     + 
Sbjct: 590 PQQPTGSFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVSRLIGAP 646

Query: 293 -----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD 341
                      L   V++RPYSVVLFD++EKA+ ++ N LL++L  D  R         D
Sbjct: 647 PGYVGHDEGGQLTEAVRRRPYSVVLFDEVEKAHIAVFNTLLQVL--DDGRLTDGQGRTVD 704

Query: 342 LTNTLIIMTSDLKDEQ-----VYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAV 396
            TNT+IIMTS+L  E      V +  +     RV +     F+P LL  LD++VV D   
Sbjct: 705 FTNTVIIMTSNLGAEHLLSGLVGKCTMQDARDRVMQEVRRHFRPELLNRLDEIVVFDPLS 764

Query: 397 --PLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL-VHIASNAARKYGQNGEGLKR 453
              L    RL +++ A    +R       + +  + +AL V +A +    YG     ++R
Sbjct: 765 HDQLRKVARLQMKDVASRLAER------GIALAVTDAALDVVLAESYDPVYG--ARPIRR 816

Query: 454 WMDQR 458
           W++++
Sbjct: 817 WLEKK 821

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4558484|gb|AAD22629.1|AF097363_1 heat shock protein 101 [Triticum aestivum]

 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 149/491 (30%), Positives = 237/491 (48%), Gaps = 81/491 (16%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
           H ++IQD A+ +A++++   R      L ++ ID++ +    C N R   D   +E+D  
Sbjct: 365 HGVRIQDRAIVVAAQLSA--RYIMGRHLPDKAIDLVDEA---CANVRVQLDSQPEEIDNL 419

Query: 79  KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVS 137
           +    +  VE   L KE D    +R   +R+  ++L+D    L   +K R + E  D + 
Sbjct: 420 ERKRIQLEVELHALEKEKDKASKARLVEVRKELDDLRDKLQPLT--MKYRKEKERIDEIR 477

Query: 138 -----------CVHDAKRVKDYSKILD-------QIDA---RVHGKFKEKL----AVDVE 172
                       + +A+R  D +++ D       +IDA   ++ G+  E L     V  E
Sbjct: 478 KLKQRREELQFTLQEAERRMDLARVADLKYGALQEIDAAIAKLEGETGENLMLTETVGPE 537

Query: 173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
           +IAEV S+ TGIP +      +ER + +  RL  RV GQ +A++ + EA+ + +A   GL
Sbjct: 538 QIAEVVSRWTGIPVTRLGQNDKERLVGMADRLHTRVVGQTEAVNAVAEAVLRSRA---GL 594

Query: 233 SSRRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
              +Q  G FLF GP   GK ELAKA+A +L+   D++N L+  DM  Y E  S+     
Sbjct: 595 GRPQQPTGSFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVARLIG 651

Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
           +            L   V++RPYSV+LFD++EKA+ ++ N LL++L  D  R        
Sbjct: 652 APPGYVGHEEGGQLTEQVRRRPYSVILFDEVEKAHVAVFNTLLQVL--DDGRLTDGQGRT 709

Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRV------NEVTGSLFKPSLLKLLDKLVVID 393
            D  NT+IIMTS+L  E +   M+     +V       EV    F+P LL  LD++VV D
Sbjct: 710 VDFRNTVIIMTSNLGAEHLLAGMVGKNSMKVARDLVMQEVR-RHFRPELLNRLDEIVVFD 768

Query: 394 LAVP-----LLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARK-YGQN 447
              P     L    RL +++ A    +R       V +  + +AL  I S A    YG  
Sbjct: 769 ---PLSHEQLRKVARLQMKDVAVRLAER------GVALAVTDAALDVILSLAYDPVYG-- 817

Query: 448 GEGLKRWMDQR 458
              ++RW+++R
Sbjct: 818 ARPIRRWIEKR 828

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326531902|dbj|BAK01327.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  148 bits (373), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 149/491 (30%), Positives = 237/491 (48%), Gaps = 81/491 (16%)

Query: 22  HRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSR---DKYQKELDKH 78
           H ++IQD A+ +A++++   R      L ++ ID++ +    C N R   D   +E+D  
Sbjct: 364 HGVRIQDRAIVVAAQLSA--RYIMGRHLPDKAIDLVDEA---CANVRVQLDSQPEEIDNL 418

Query: 79  KYFLRRAVVEYEQLVKE-DTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVS 137
           +    +  VE   L KE D    +R   +R+  ++L+D    L   +K R + E  D + 
Sbjct: 419 ERKRIQLEVELHALEKEKDKASKARLVEVRKELDDLRDKLQPLT--MKYRKEKERIDEIR 476

Query: 138 -----------CVHDAKRVKDYSKILD-------QIDA---RVHGKFKEKL----AVDVE 172
                       + +A+R  D +++ D       +IDA   ++ G+  E L     V  E
Sbjct: 477 KLKQRREELQFTLQEAERRMDLARVADLKYGALQEIDAAIAKLEGETGENLMLTETVGPE 536

Query: 173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
           +IAEV S+ TGIP +      +ER + +  RL  RV GQ +A++ + EA+ + +A   GL
Sbjct: 537 QIAEVVSRWTGIPVTRLGQNDKERLVGMADRLHTRVVGQTEAVNAVAEAVLRSRA---GL 593

Query: 233 SSRRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
              +Q  G FLF GP   GK ELAKA+A +L+   D++N L+  DM  Y E  S+     
Sbjct: 594 GRPQQPTGSFLFLGPTGVGKTELAKALAEQLF---DDENLLVRIDMSEYMEQHSVARLIG 650

Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
           +            L   V++RPYSV+LFD++EKA+ ++ N LL++L  D  R        
Sbjct: 651 APPGYVGHEEGGQLTEQVRRRPYSVILFDEVEKAHVAVFNTLLQVL--DDGRLTDGQGRT 708

Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRV------NEVTGSLFKPSLLKLLDKLVVID 393
            D  NT+IIMTS+L  E +   M+     +V       EV    F+P LL  LD++VV D
Sbjct: 709 VDFRNTVIIMTSNLGAEHLLAGMVGKNSMKVARDLVMQEVRRH-FRPELLNRLDEIVVFD 767

Query: 394 LAVP-----LLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARK-YGQN 447
              P     L    RL +++ A    +R       V +  + +AL  I S A    YG  
Sbjct: 768 ---PLSHEQLRKVARLQMKDVAVRLAER------GVALAVTDAALDVILSLAYDPVYG-- 816

Query: 448 GEGLKRWMDQR 458
              ++RW+++R
Sbjct: 817 ARPIRRWIEKR 827

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	550
DICTYBASE|DDB_G0291314	886	DDB_G0291314 "putative endopep	0.583	0.362	0.282	2e-22
TIGR_CMR|GSU_0658	865	GSU_0658 "ClpB protein" [Geoba	0.487	0.309	0.313	3.2e-22
UNIPROTKB|Q889C2	854	clpB "Chaperone protein ClpB"	0.652	0.420	0.277	1.5e-21
TAIR|locus:2019667	911	HSP101 "heat shock protein 101	0.330	0.199	0.364	3.3e-21
UNIPROTKB|Q9KU18	857	clpB "Chaperone protein ClpB"	0.649	0.416	0.269	2.6e-20
TIGR_CMR|VC_0711	857	VC_0711 "clpB protein" [Vibrio	0.649	0.416	0.269	2.6e-20
UNIPROTKB|Q6F2Y7	912	CLPB1 "Chaperone protein ClpB1	0.390	0.235	0.348	3.8e-20
UNIPROTKB|P63284	857	clpB "ClpB chaperone" [Escheri	0.596	0.382	0.275	4.4e-20
TIGR_CMR|SO_3577	857	SO_3577 "clpB protein" [Shewan	0.410	0.263	0.313	4.4e-20
TIGR_CMR|CBU_0094	859	CBU_0094 "clpB protein" [Coxie	0.62	0.396	0.269	1.2e-18

DICTYBASE|DDB_G0291314 DDB_G0291314 "putative endopeptidase Clp" [Dictyostelium discoideum (taxid:44689)]

 Score = 290 (107.1 bits), Expect = 2.0e-22, P = 2.0e-22
 Identities = 99/351 (28%), Positives = 165/351 (47%)

Query:    24 LQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYFLR 83
             + + DEA    +R+  + + +A   L  R + + ++         D  ++ L   +  L 
Sbjct:   391 IDLVDEAC-ANTRVQLNSQPEAIDNLERRRLQLEVESAALEKEEDDASKQRLKAVQEELN 449

Query:    84 RAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAK 143
             +   E + L  +     SR   +R++  +L+D   +L S  + R    YD   +  +   
Sbjct:   450 QIKDELQPLEAKYQKERSRVDKIRELRKKLEDIKVKL-SDAERR----YDTSAAADYRYF 504

Query:   144 RVKDYSKILDQIDARVHGKFKEKLAVDV---EEIAEVASKLTGIPASWFCTKPEERYMRV 200
              + D  K ++  D       K+ +  +V   E+IA+V S+ TGIP S      ++R + +
Sbjct:   505 VIPDLEKQIEVCDKERKENKKDAMVSEVVTPEQIADVVSRWTGIPVSKLSQTEKQRLLSL 564

Query:   201 QGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQ-LGLFLFAGPNCSGKAELAKAIA 259
                L  RV GQ++A+D + +A+ +   +K GL+   Q LG FLF GP   GK ELAKA+A
Sbjct:   565 ADHLHNRVVGQDEAVDAVADAVLR---SKSGLARENQPLGSFLFLGPTGVGKTELAKALA 621

Query:   260 NELYDNNDNDNHLIHFDMGNYTELESIKHF---------FDS---LAALVKKRPYSVVLF 307
              EL+D+   ++H++  DM  Y E  S+            +D    L   V++RPYSVVLF
Sbjct:   622 LELFDD---ESHMVRIDMSEYMEQHSVSRLIGAPPGYVGYDQGGQLTEAVRRRPYSVVLF 678

Query:   308 DKIEKAXXXXXXXXXXXXXTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQV 358
             D++EKA              D  R         D +N +IIMTS+L  + +
Sbjct:   679 DEVEKAHQQVWNVLLQVL--DEGRLTDGQGRTVDFSNVVIIMTSNLGSQYI 727

GO:0019538 "protein metabolic process" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

TIGR_CMR|GSU_0658 GSU_0658 "ClpB protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 266 (98.7 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
 Identities = 94/300 (31%), Positives = 142/300 (47%)

Query:   143 KRVKDYSKILDQIDARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQG 202
             K + D S  L+  D R  GK   +  VD E +AE+ S+ TGIP S       ++ + ++ 
Sbjct:   514 KEIADRSAELE--DIRKEGKMLPE-EVDGELVAEIVSRWTGIPVSRMMEGEADKLVHMED 570

Query:   203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQLGLFLFAGPNCSGKAELAKAIANE 261
             RL  RV GQ++A+ ++  A+ +   A+ GLS   R +G FLF GP   GK E AKA+A  
Sbjct:   571 RLITRVVGQDEALVLVANAIRR---ARSGLSDPNRPIGSFLFLGPTGVGKTETAKALAEF 627

Query:   262 LYDNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLFDK 309
             L+  ND D  ++  DM  Y E  ++     +            L   V++RPYS+VLFD+
Sbjct:   628 LF--ND-DQAIVRIDMSEYQEKHTVARLIGAPPGYVGYEEGGQLTEAVRRRPYSIVLFDE 684

Query:   310 IEKAXXXXXXXXXXXXXTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGR 369
             IEKA              D  R         D  NT+IIMTS+L  + + +   ++ Y R
Sbjct:   685 IEKAHPEVFNVLLQVL--DDGRLTDGQGRTVDFRNTVIIMTSNLGSQWIQQYG-SSDYAR 741

Query:   370 VNE-VTGSL---FKPSXXXXXXXXXXXXXAVPLLDTTRLLLREWACEETKRRNNDSKAVI 425
             +   VT +L   FKP              A+PL    +++  +  C   K+R  D + V+
Sbjct:   742 MKAMVTETLKEGFKPEFLNRIDEIVIYH-ALPLEQIKKIVDIQVEC--LKQRLADRRIVL 798

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

UNIPROTKB|Q889C2 clpB "Chaperone protein ClpB" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 282 (104.3 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 113/407 (27%), Positives = 181/407 (44%)

Query:     4 HKFLVKEMDNQIVSLEKI-HRL----QIQDEALFL----ASRIAQHPRNK--ATGELRER 52
             HK  +   D  I++  K+ HR     Q+ D+A+ L    ASRI     +K      L  R
Sbjct:   361 HKVAIT--DGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEIDSKPEVLDRLERR 418

Query:    53 FIDILLKGIKRCLNSRDKYQ-KELDKHKYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDN 111
              I + ++  +     +D+   K L+K +  + R   EY  L +  T   +      QI  
Sbjct:   419 LIQLKVEA-QALKKEKDEAAIKRLEKLQEEIVRLEKEYADLEEIWTSEKAEVTGSAQIQQ 477

Query:   112 ELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLA--- 168
             +++ +  EL +    R + + +      +    + D  + L  +D   HGK + +L    
Sbjct:   478 KIEQSRQELEA---ARRRGDLNRMAELQYGI--IPDLERSLQMVDQ--HGKPENQLLRSK 530

Query:   169 VDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAA 228
             V  EEIAEV SK TGIP S       E+ +R++  L  RV GQ +A+  +  A+ + +A 
Sbjct:   531 VTEEEIAEVVSKWTGIPVSKMLEGEREKLLRMETLLHNRVIGQEEAVVAVSNAVRRSRA- 589

Query:   229 KKGLSS-RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287
               GLS   R  G F+F GP   GK EL KA+A  L+D  +    ++  DM  + E  S+ 
Sbjct:   590 --GLSDPNRPSGSFMFLGPTGVGKTELCKALAEFLFDTEEA---MVRIDMSEFMEKHSVA 644

Query:   288 HFFDS------------LAALVKKRPYSVVLFDKIEKAXXXXXXXXXXXXXTDFNRKATR 335
                 +            L   V+++PYSV+L D++EKA              D     + 
Sbjct:   645 RLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHSDVFNILLQVLE-DGRLTDSH 703

Query:   336 GIAAFDLTNTLIIMTSDLKDEQVYEVM--LTATYGRVNEVTGSLFKP 380
             G    D  NT+I+MTS+L   Q+ E++    A    V +   + F+P
Sbjct:   704 G-RTVDFRNTVIVMTSNLGSAQIQELVGDREAQRAAVMDAVSTHFRP 749

GO:0005524 "ATP binding" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0031249 "denatured protein binding" evidence=ISS

TAIR|locus:2019667 HSP101 "heat shock protein 101" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
 Identities = 74/203 (36%), Positives = 103/203 (50%)

Query:   169 VDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAA 228
             V  E IAEV S+ TGIP +      +ER + +  RL KRV GQN A++ + EA+ + +A 
Sbjct:   532 VGPEHIAEVVSRWTGIPVTRLGQNEKERLIGLADRLHKRVVGQNQAVNAVSEAILRSRA- 590

Query:   229 KKGLSSRRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287
               GL   +Q  G FLF GP   GK ELAKA+A +L+D+   +N L+  DM  Y E  S+ 
Sbjct:   591 --GLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDD---ENLLVRIDMSEYMEQHSVS 645

Query:   288 HFFDS------------LAALVKKRPYSVVLFDKIEKAXXXXXXXXXXXXXTDFNRKATR 335
                 +            L   V++RPY V+LFD++EKA              D  R    
Sbjct:   646 RLIGAPPGYVGHEEGGQLTEAVRRRPYCVILFDEVEKAHVAVFNTLLQVL--DDGRLTDG 703

Query:   336 GIAAFDLTNTLIIMTSDLKDEQV 358
                  D  N++IIMTS+L  E +
Sbjct:   704 QGRTVDFRNSVIIMTSNLGAEHL 726

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IGI;RCA;IMP

GO:0043335 "protein unfolding" evidence=IMP

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0045727 "positive regulation of translation" evidence=IMP

UNIPROTKB|Q9KU18 clpB "Chaperone protein ClpB" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 271 (100.5 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 109/405 (26%), Positives = 177/405 (43%)

Query:     8 VKEMDNQIVSLEKI-HRL----QIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIK 62
             V+  D  IV+   + HR     Q+ D+A+ L    A   R +   + +   +D L + I 
Sbjct:   363 VEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQI--DSKPEALDKLERKII 420

Query:    63 RCLNSRDKYQKELDKHKYFLRRAVVEYEQLVKEDTDHSS-RSFWLRQIDNELKDAFFELV 121
             +    +     E D+     +R  +  E+L +++ D++     W  +    L        
Sbjct:   421 QLKIEQQALSNEHDEASE--KRLAILNEELQEKERDYAELEEVWKAE-KAALSGTQHIKA 477

Query:   122 SFVKLRMQVEYDDFVSCVHDAKRVKD--YSKILD---QIDARVHGKFKE----KLAVDVE 172
             +  + RM +E         D  R+ +  Y +I +   Q+D     + +E    +  V   
Sbjct:   478 ALEQARMDLEV---ARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEMTLLRNKVTDA 534

Query:   173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
             EIAEV SK TGIP S      +E+ +R++  L KRV GQ +A++V+  A+ + +A   GL
Sbjct:   535 EIAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRA---GL 591

Query:   233 SS-RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
             S   R +G FLF GP   GK EL K +AN L+D+ D    ++  DM  + E  S+     
Sbjct:   592 SDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDA---MVRVDMSEFMEKHSVARLVG 648

Query:   292 S------------LAALVKKRPYSVVLFDKIEKAXXXXXXXXXXXXXTDFNRKATRGIAA 339
             +            L   V+++PYSV+L D++EKA              D  R        
Sbjct:   649 APPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRT 706

Query:   340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKP 380
              D  NT++IMTS+L   ++ E      Y  + E    V    F+P
Sbjct:   707 VDFRNTVVIMTSNLGSSRIQENFARLDYQGIKEQVMDVVSKHFRP 751

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

TIGR_CMR|VC_0711 VC_0711 "clpB protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 271 (100.5 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 109/405 (26%), Positives = 177/405 (43%)

Query:     8 VKEMDNQIVSLEKI-HRL----QIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIK 62
             V+  D  IV+   + HR     Q+ D+A+ L    A   R +   + +   +D L + I 
Sbjct:   363 VEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASSIRMQI--DSKPEALDKLERKII 420

Query:    63 RCLNSRDKYQKELDKHKYFLRRAVVEYEQLVKEDTDHSS-RSFWLRQIDNELKDAFFELV 121
             +    +     E D+     +R  +  E+L +++ D++     W  +    L        
Sbjct:   421 QLKIEQQALSNEHDEASE--KRLAILNEELQEKERDYAELEEVWKAE-KAALSGTQHIKA 477

Query:   122 SFVKLRMQVEYDDFVSCVHDAKRVKD--YSKILD---QIDARVHGKFKE----KLAVDVE 172
             +  + RM +E         D  R+ +  Y +I +   Q+D     + +E    +  V   
Sbjct:   478 ALEQARMDLEV---ARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEMTLLRNKVTDA 534

Query:   173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
             EIAEV SK TGIP S      +E+ +R++  L KRV GQ +A++V+  A+ + +A   GL
Sbjct:   535 EIAEVLSKQTGIPVSKMLEAEKEKLLRMEDVLHKRVIGQKEAVEVVANAIRRSRA---GL 591

Query:   233 SS-RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
             S   R +G FLF GP   GK EL K +AN L+D+ D    ++  DM  + E  S+     
Sbjct:   592 SDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDSEDA---MVRVDMSEFMEKHSVARLVG 648

Query:   292 S------------LAALVKKRPYSVVLFDKIEKAXXXXXXXXXXXXXTDFNRKATRGIAA 339
             +            L   V+++PYSV+L D++EKA              D  R        
Sbjct:   649 APPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRT 706

Query:   340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNE----VTGSLFKP 380
              D  NT++IMTS+L   ++ E      Y  + E    V    F+P
Sbjct:   707 VDFRNTVVIMTSNLGSSRIQENFARLDYQGIKEQVMDVVSKHFRP 751

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

UNIPROTKB|Q6F2Y7 CLPB1 "Chaperone protein ClpB1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 270 (100.1 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 85/244 (34%), Positives = 120/244 (49%)

Query:   141 DAKRVKDYSK-ILDQID---ARVHGKFKEKL----AVDVEEIAEVASKLTGIPASWFCTK 192
             D  RV D     L +ID   A++  +  E L     V  E+IAEV S+ TGIP +     
Sbjct:   497 DLARVADLKYGALQEIDVAIAKLESETGENLMLTETVGPEQIAEVVSRWTGIPVTRLGQN 556

Query:   193 PEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQ-LGLFLFAGPNCSGK 251
              +ER + +  RL +RV GQ +A+  + EA+ + +A   GL   +Q  G FLF GP   GK
Sbjct:   557 DKERLVGLADRLHQRVVGQAEAVSAVAEAVLRSRA---GLGRPQQPTGSFLFLGPTGVGK 613

Query:   252 AELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKK 299
              ELAKA+A +L+D+   +N L+  DM  Y E  S+     +            L   V++
Sbjct:   614 TELAKALAEQLFDD---ENLLVRIDMSEYMEQHSVARLIGAPPGYVGHEEGGQLTEQVRR 670

Query:   300 RPYSVVLFDKIEKAXXXXXXXXXXXXXTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY 359
             RPYSV+LFD++EKA              D  R         D  NT+IIMTS+L  E + 
Sbjct:   671 RPYSVILFDEVEKAHVAVFNTLLQVL--DDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL 728

Query:   360 EVML 363
               M+
Sbjct:   729 AGMV 732

GO:0034605 "cellular response to heat" evidence=IGI

UNIPROTKB|P63284 clpB "ClpB chaperone" [Escherichia coli K-12 (taxid:83333)]

 Score = 269 (99.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 104/377 (27%), Positives = 169/377 (44%)

Query:    25 QIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYFLRR 84
             Q+ D+A+ L    A   R +   +  E  +D L + I +    +    KE D+     +R
Sbjct:   385 QLPDKAIDLIDEAASSIRMQIDSKPEE--LDRLDRRIIQLKLEQQALMKESDEASK--KR 440

Query:    85 AVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKR 144
               +  E+L  ++  +S       +++ E K     L     ++ ++E       +  A+R
Sbjct:   441 LDMLNEELSDKERQYS-------ELEEEWKAEKASLSGTQTIKAELEQAKIA--IEQARR 491

Query:   145 VKD--------YSKILD---QIDA--RVHGKFKEKLAVDVE--EIAEVASKLTGIPASWF 189
             V D        Y KI +   Q++A  ++ GK    L   V   EIAEV ++ TGIP S  
Sbjct:   492 VGDLARMSELQYGKIPELEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRM 551

Query:   190 CTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQLGLFLFAGPNC 248
                  E+ +R++  L  RV GQN+A+D +  A+ + +A   GL+   R +G FLF GP  
Sbjct:   552 MESEREKLLRMEQELHHRVIGQNEAVDAVSNAIRRSRA---GLADPNRPIGSFLFLGPTG 608

Query:   249 SGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAAL 296
              GK EL KA+AN ++D+   D  ++  DM  + E  S+     +            L   
Sbjct:   609 VGKTELCKALANFMFDS---DEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEA 665

Query:   297 VKKRPYSVVLFDKIEKAXXXXXXXXXXXXXTDFNRKATRGIAAFDLTNTLIIMTSDLKDE 356
             V++RPYSV+L D++EKA              D  R         D  NT++IMTS+L  +
Sbjct:   666 VRRRPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVDFRNTVVIMTSNLGSD 723

Query:   357 QVYEVMLTATYGRVNEV 373
              + E      Y  + E+
Sbjct:   724 LIQERFGELDYAHMKEL 740

GO:0042802 "identical protein binding" evidence=IPI

GO:0019538 "protein metabolic process" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006986 "response to unfolded protein" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TIGR_CMR|SO_3577 SO_3577 "clpB protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 249 (92.7 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
 Identities = 81/258 (31%), Positives = 126/258 (48%)

Query:   144 RVKDYSKILD---QIDARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRV 200
             R+ +  K LD   Q + +     + K+  D+E IAEV SK TGIP S       E+ +++
Sbjct:   505 RIPELEKQLDLASQAEMQDMTLLRNKVT-DLE-IAEVLSKATGIPVSKMLEGEREKLLQM 562

Query:   201 QGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQLGLFLFAGPNCSGKAELAKAIA 259
             +  L +RV GQN+A+D +  A+ + +A   GL+   R +G FLF GP   GK EL K++A
Sbjct:   563 EVALHERVIGQNEAVDAVANAIRRSRA---GLADPNRPIGSFLFLGPTGVGKTELCKSLA 619

Query:   260 NELYDNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLF 307
               L+D+   ++ L+  DM  + E  ++     +            L   V+++PYSV+L 
Sbjct:   620 RFLFDS---ESALVRIDMSEFMEKHAVSRLVGAPPGYVGYEEGGYLTEAVRRKPYSVILL 676

Query:   308 DKIEKAXXXXXXXXXXXXXTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATY 367
             D++EKA              D  R         D  NT+IIMTS+L  + + E     +Y
Sbjct:   677 DEVEKAHPDVFNILLQVL--DDGRLTDGQGRTVDFRNTVIIMTSNLGSDIIQEGFGHLSY 734

Query:   368 GRV-----NEVTGSLFKP 380
               +     N VT S F+P
Sbjct:   735 SEMKSAVMNVVTHS-FRP 751

GO:0004176 "ATP-dependent peptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|CBU_0094 CBU_0094 "clpB protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 256 (95.2 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 102/378 (26%), Positives = 160/378 (42%)

Query:    24 LQIQDEALFLASRIAQHPRNKAT--GELRERFIDILLK--GIKRCLNSRDKYQKELDKHK 79
             + + DEA   AS+I     +K      L  R I + ++   +K+  +   K  K L   +
Sbjct:   391 IDLIDEA---ASQIRMEMDSKPVELDRLERRLIQLKIEREALKKETDEASK--KRLSDLE 445

Query:    80 YFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCV 139
               ++    EY  L +      +     +QI  EL+ A  EL +  +        +    +
Sbjct:   446 TEIKNVEKEYSDLEEVWKSEKASLHGTQQIKEELEQARIELEAAGRAGDLARMSELQYGI 505

Query:   140 HDAKRVKDYSKILDQIDARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMR 199
                  +    K   Q + + H     +  V  EE+AEV SK T IP S       E+ + 
Sbjct:   506 --IPELDKKLKAASQKEEQFHDHKLLRSRVTEEEVAEVVSKWTHIPVSKMLEGEREKLLH 563

Query:   200 VQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQLGLFLFAGPNCSGKAELAKAI 258
             ++  L KRV GQ++A++ +  A+ + +A   GLS   R +G FLF GP   GK EL KA+
Sbjct:   564 METELHKRVIGQDEAVNAVANAIRRSRA---GLSDPNRPVGSFLFLGPTGVGKTELCKAL 620

Query:   259 ANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVL 306
             A  L+D  D    ++  DM  + E  S+     +            L   +++RPYSV+L
Sbjct:   621 AVFLFDTEDA---MVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAIRRRPYSVIL 677

Query:   307 FDKIEKAXXXXXXXXXXXXXTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTAT 366
              D+IEKA              D  R         D  NT+I+MTS+L  + + E      
Sbjct:   678 LDEIEKAHNDVFNVLLQVL--DDGRLTDGQGRTVDFRNTVIVMTSNLGSDLIREFS-GEN 734

Query:   367 YGR----VNEVTGSLFKP 380
             Y +    V EV    F+P
Sbjct:   735 YDKMKDAVMEVVAQHFRP 752

GO:0006508 "proteolysis" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	550
COG0542	786	COG0542, clpA, ATP-binding subunits of Clp proteas	2e-37
TIGR03346	852	TIGR03346, chaperone_ClpB, ATP-dependent chaperone	6e-35
PRK10865	857	PRK10865, PRK10865, protein disaggregation chapero	2e-31
TIGR02639	730	TIGR02639, ClpA, ATP-dependent Clp protease ATP-bi	4e-31
CHL00095	821	CHL00095, clpC, Clp protease ATP binding subunit	1e-30
TIGR03345	852	TIGR03345, VI_ClpV1, type VI secretion ATPase, Clp	2e-23
PRK11034	758	PRK11034, clpA, ATP-dependent Clp protease ATP-bin	6e-21
pfam07724	168	pfam07724, AAA_2, AAA domain (Cdc48 subfamily)	7e-20
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	1e-07
pfam13177	161	pfam13177, DNA_pol3_delta2, DNA polymerase III, de	0.004

>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

 Score =  147 bits (372), Expect = 2e-37
 Identities = 82/251 (32%), Positives = 127/251 (50%), Gaps = 44/251 (17%)

Query: 169 VDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAA 228
           VD ++IAEV ++ TGIP +      +E+ + ++ RLKKRV GQ++A++ + +A+   + A
Sbjct: 454 VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAI---RRA 510

Query: 229 KKGLSS-RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287
           + GL    R +G FLF GP   GK ELAKA+A  L+    ++  LI  DM  Y E  S+ 
Sbjct: 511 RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRIDMSEYMEKHSVS 567

Query: 288 HF---------FDSLAAL---VKKRPYSVVLFDKIEKANSSILNLLLKILK----TDFNR 331
                      ++    L   V+++PYSV+L D+IEKA+  + NLLL++L     TD   
Sbjct: 568 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQG 627

Query: 332 KATRGIAAFDLTNTLIIMTSDL-----------KDEQVYEVMLTATYGRVNEVTGSLFKP 380
           +        D  NT+IIMTS+             D    E +       V E     F+P
Sbjct: 628 RTV------DFRNTIIIMTSNAGSEEILRDADGDDFADKEALKE----AVMEELKKHFRP 677

Query: 381 SLLKLLDKLVV 391
             L  +D+++ 
Sbjct: 678 EFLNRIDEIIP 688

Length = 786

>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB

 Score =  139 bits (353), Expect = 6e-35
 Identities = 99/292 (33%), Positives = 150/292 (51%), Gaps = 58/292 (19%)

Query: 142 AKRVKDYSKI--------------LDQIDARVHGKFKEKLA---VDVEEIAEVASKLTGI 184
           A+R  D +K               L   +A++  + K +L    V  EEIAEV S+ TGI
Sbjct: 484 AEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGI 543

Query: 185 PASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQLGLFLF 243
           P S       E+ + ++  L +RV GQ++A++ + +A+ + +A   GLS   R +G FLF
Sbjct: 544 PVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRA---GLSDPNRPIGSFLF 600

Query: 244 AGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAAL------- 296
            GP   GK ELAKA+A  L+D+   ++ ++  DM  Y E    KH   S+A L       
Sbjct: 601 LGPTGVGKTELAKALAEFLFDD---EDAMVRIDMSEYME----KH---SVARLIGAPPGY 650

Query: 297 ------------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIA-AFDLT 343
                       V+++PYSVVLFD++EKA+  + N+LL++L  D  R  T G     D  
Sbjct: 651 VGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL--DDGR-LTDGQGRTVDFR 707

Query: 344 NTLIIMTSDLKDEQVYEVMLTATYGR----VNEVTGSLFKPSLLKLLDKLVV 391
           NT+IIMTS+L  + + E+     Y      V EV  + F+P  L  +D++VV
Sbjct: 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVV 759

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins [Protein fate, Protein folding and stabilization]. Length = 852

>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional

 Score =  129 bits (326), Expect = 2e-31
 Identities = 80/236 (33%), Positives = 124/236 (52%), Gaps = 25/236 (10%)

Query: 173 EIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL 232
           EIAEV ++ TGIP S       E+ +R++  L  RV GQN+A++ +  A+ + +A   GL
Sbjct: 535 EIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRA---GL 591

Query: 233 SS-RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD 291
           S   R +G FLF GP   GK EL KA+AN ++D++D    ++  DM  + E  S+     
Sbjct: 592 SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDA---MVRIDMSEFMEKHSVSRLVG 648

Query: 292 S------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA 339
           +            L   V++RPYSV+L D++EKA+  + N+LL++L  D  R        
Sbjct: 649 APPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL--DDGRLTDGQGRT 706

Query: 340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGR----VNEVTGSLFKPSLLKLLDKLVV 391
            D  NT++IMTS+L  + + E      Y      V  V    F+P  +  +D++VV
Sbjct: 707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVV 762

Length = 857

>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA

 Score =  127 bits (322), Expect = 4e-31
 Identities = 87/275 (31%), Positives = 130/275 (47%), Gaps = 51/275 (18%)

Query: 150 KILDQID-----ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRL 204
           K +D ID      R+  K K+K  V+V++I  V +K+  IP     +   E+   ++  L
Sbjct: 392 KAIDVIDEAGAAFRLRPKAKKKANVNVKDIENVVAKMAKIPVKTVSSDDREQLKNLEKNL 451

Query: 205 KKRVFGQNDAIDVIFEALTKPKAAKKGL-SSRRQLGLFLFAGPNCSGKAELAKAIANELY 263
           K ++FGQ++AID +  A+   K ++ GL    + +G FLF GP   GK ELAK +A EL 
Sbjct: 452 KAKIFGQDEAIDQLVSAI---KRSRAGLGDPNKPVGSFLFVGPTGVGKTELAKQLAEEL- 507

Query: 264 DNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLFDKIE 311
                  HL+ FDM  Y E  ++     S            L   V+K P+ V+L D+IE
Sbjct: 508 -----GVHLLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGGLLTDAVRKHPHCVLLLDEIE 562

Query: 312 KANSSILNLLLKILK----TDFN-RKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTAT 366
           KA+  I N+LL+++     TD N RKA       D  N ++IMTS+    +    M    
Sbjct: 563 KAHPDIYNILLQVMDYATLTDNNGRKA-------DFRNVILIMTSNAGASE----MSKPP 611

Query: 367 YGRVNEVTGS--------LFKPSLLKLLDKLVVID 393
            G   E + S        LF P     LD ++  +
Sbjct: 612 IGFGGENSESKSLKAIKKLFSPEFRNRLDAIIHFN 646

[Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 730

>gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit

 Score =  126 bits (319), Expect = 1e-30
 Identities = 119/418 (28%), Positives = 183/418 (43%), Gaps = 105/418 (25%)

Query: 19  EKIHRLQIQDEALFLASRIAQHPRNKATGELRERF-----IDILLKGIKRC--LNSR-DK 70
           EK H L I D+AL  A++++          + +RF     ID+L +   R   +NSR   
Sbjct: 358 EKHHNLSISDKALEAAAKLSD-------QYIADRFLPDKAIDLLDEAGSRVRLINSRLPP 410

Query: 71  YQKELDKHKYFLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQV 130
             +ELDK    LR  + + ++ ++E    +++         +L+D   E           
Sbjct: 411 AARELDKE---LREILKDKDEAIREQDFETAK---------QLRDREME----------- 447

Query: 131 EYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFC 190
                         V+     + Q       K  E   V  E+IAE+ S  TGIP +   
Sbjct: 448 --------------VRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLT 493

Query: 191 TKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQLGLFLFAGPNCS 249
               E+ + ++  L KR+ GQ++A+  + +A+   + A+ GL +  R +  FLF+GP   
Sbjct: 494 KSESEKLLHMEETLHKRIIGQDEAVVAVSKAI---RRARVGLKNPNRPIASFLFSGPTGV 550

Query: 250 GKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALV 297
           GK EL KA+A+  + + D    +I  DM  Y E  ++     S            L   V
Sbjct: 551 GKTELTKALASYFFGSEDA---MIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAV 607

Query: 298 KKRPYSVVLFDKIEKANSSILNLLLKILK----TDFNRKATRGIAAFDLTNTLIIMTSDL 353
           +K+PY+VVLFD+IEKA+  I NLLL+IL     TD      R I   D  NTLIIMTS+L
Sbjct: 608 RKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTD---SKGRTI---DFKNTLIIMTSNL 661

Query: 354 --------------------KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
                                 E+ Y+ +       VNE     F+P  L  LD+++V
Sbjct: 662 GSKVIETNSGGLGFELSENQLSEKQYKRLSN----LVNEELKQFFRPEFLNRLDEIIV 715

Length = 821

>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family

 Score =  104 bits (262), Expect = 2e-23
 Identities = 73/248 (29%), Positives = 115/248 (46%), Gaps = 38/248 (15%)

Query: 169 VDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAA 228
           VD + +AEV +  TGIP         E  + +  RL +RV GQ+ A++ I E +   + A
Sbjct: 529 VDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERI---RTA 585

Query: 229 KKGLSS-RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK 287
           + GL   R+ LG+FL  GP+  GK E A A+A  LY    N   LI  +M  + E  ++ 
Sbjct: 586 RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQN---LITINMSEFQEAHTVS 642

Query: 288 HFFDS------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR 335
               S            L   V+++PYSVVL D++EKA+  +L L  ++    F+    +
Sbjct: 643 RLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQV----FD----K 694

Query: 336 GIAA------FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK----- 384
           G+         D  NT+I++TS+   + +  +          E      +P LLK     
Sbjct: 695 GVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPA 754

Query: 385 LLDKLVVI 392
            L ++ VI
Sbjct: 755 FLGRMTVI 762

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 852

>gnl|CDD|236828 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional

 Score = 96.4 bits (240), Expect = 6e-21
 Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 39/226 (17%)

Query: 150 KILDQID-----ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRL 204
           K +D ID     AR+    K K  V+V +I  V +++  IP         +    +  RL
Sbjct: 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456

Query: 205 KKRVFGQNDAIDVIFEALTKPKAAKKGL-SSRRQLGLFLFAGPNCSGKAELAKAIANELY 263
           K  VFGQ+ AI+ + EA+   K ++ GL    + +G FLFAGP   GK E+   ++  L 
Sbjct: 457 KMLVFGQDKAIEALTEAI---KMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL- 512

Query: 264 DNNDNDNHLIHFDMGNYTELESIKHF---------FDS---LAALVKKRPYSVVLFDKIE 311
                   L+ FDM  Y E  ++            FD    L   V K P++V+L D+IE
Sbjct: 513 -----GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIE 567

Query: 312 KANSSILNLLLKILK----TDFN-RKATRGIAAFDLTNTLIIMTSD 352
           KA+  + NLLL+++     TD N RKA       D  N +++MT++
Sbjct: 568 KAHPDVFNLLLQVMDNGTLTDNNGRKA-------DFRNVVLVMTTN 606

Length = 758

>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily)

 Score = 86.5 bits (215), Expect = 7e-20
 Identities = 53/172 (30%), Positives = 70/172 (40%), Gaps = 34/172 (19%)

Query: 236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAA 295
           R +G FLF GP   GK ELAKA+A  L     ++  LI  DM  Y E  S+     +   
Sbjct: 1   RPIGSFLFLGPTGVGKTELAKALAELL---FGDERALIRIDMSEYMEEHSVSRLIGAPPG 57

Query: 296 LV------------KKRPYSVVLFDKIEKANSSILNLLLKIL-----KTDFNRKATRGIA 338
            V            +++PYS+VL D+IEKA+  + N LL+IL          RK      
Sbjct: 58  YVGYEEGGQLTEAVRRKPYSIVLIDEIEKAHPGVQNDLLQILEGGTLTDKQGRKV----- 112

Query: 339 AFDLTNTLIIMTS-----DLKDEQVYEVMLT--ATYGRVNEVTGSLFKPSLL 383
             D  NTL IMT       + D                V ++    F P  L
Sbjct: 113 --DFRNTLFIMTGNFGSEKISDASRLGDSPDYELLKELVMDLLKKGFIPEFL 162

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 15/137 (10%)

Query: 226 KAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285
             A +           L  GP  +GK  LA+AIANEL+         ++ +  +  E   
Sbjct: 7   IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAP---FLYLNASDLLEGLV 63

Query: 286 IKHFFDS-----LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF 340
           +   F       L  L +K    V+  D+I+  +    N LL++L+T  + +  R     
Sbjct: 64  VAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRE---- 119

Query: 341 DLTNTLIIMTSDLKDEQ 357
              N  +I  ++     
Sbjct: 120 ---NVRVIGATNRPLLG 133

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|221959 pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 25/107 (23%)

Query: 241 FLFAGPNCSGKAELAKAIANELYDNN----------------DNDNH--LIHFDMGNYT- 281
           +LF+GP+  GK ELA   A  L+  N                +N NH  +I  +    + 
Sbjct: 22  YLFSGPDGVGKLELALEFAKALFCENPQDDEPCGECKSCKRIENGNHPDVIIIEPEGKSI 81

Query: 282 ---ELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKIL 325
              ++  +   F S      K    V + +  EK   S  N LLK L
Sbjct: 82  KIDQIRELIEEF-SKKPFEGK--KKVYIIEDAEKMTESAANALLKTL 125

DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA. Length = 161

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	550
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	100.0
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	100.0
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	100.0
PRK10865	857	protein disaggregation chaperone; Provisional	100.0
CHL00095	821	clpC Clp protease ATP binding subunit	100.0
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	100.0
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	100.0
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	100.0
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	100.0
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.97
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.97
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.97
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.97
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	99.97
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	99.97
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.96
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	99.96
COG2204	464	AtoC Response regulator containing CheY-like recei	99.96
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.91
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.9
PRK05022	509	anaerobic nitric oxide reductase transcription reg	99.9
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.9
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.9
PRK15424	538	propionate catabolism operon regulatory protein Pr	99.9
CHL00181	287	cbbX CbbX; Provisional	99.89
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	99.89
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	99.89
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.88
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.88
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.88
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.88
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.87
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	99.87
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	99.87
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	99.87
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	99.85
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.85
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	99.85
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.85
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	99.83
PRK15115	444	response regulator GlrR; Provisional	99.83
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	99.83
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	99.82
KOG0745	564	consensus Putative ATP-dependent Clp-type protease	99.81
KOG2028	554	consensus ATPase related to the helicase subunit o	99.8
PRK10365	441	transcriptional regulatory protein ZraR; Provision	99.8
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.8
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.79
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	99.79
PRK13341	725	recombination factor protein RarA/unknown domain f	99.78
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.77
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	99.77
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.77
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.76
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.75
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	99.75
PRK13342	413	recombination factor protein RarA; Reviewed	99.75
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.75
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.75
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	99.74
PLN03025	319	replication factor C subunit; Provisional	99.74
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.74
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.73
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.73
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.73
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.72
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.72
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.71
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.71
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.7
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.7
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.7
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.7
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.7
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.7
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.69
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.69
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.69
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.69
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.69
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.68
PHA02544	316	44 clamp loader, small subunit; Provisional	99.67
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.67
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.67
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.67
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.66
PRK12402	337	replication factor C small subunit 2; Reviewed	99.65
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.65
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.65
CHL00195	489	ycf46 Ycf46; Provisional	99.65
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.65
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.65
PRK13531	498	regulatory ATPase RavA; Provisional	99.65
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.64
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.63
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	99.63
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.63
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	99.62
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	99.61
PRK04195	482	replication factor C large subunit; Provisional	99.61
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.61
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.61
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.6
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.6
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.59
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.59
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.58
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.58
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.58
CHL00176	638	ftsH cell division protein; Validated	99.57
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.57
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.55
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.55
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.55
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.55
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.54
PHA02244	383	ATPase-like protein	99.54
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.54
PRK08084	235	DNA replication initiation factor; Provisional	99.53
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.52
PF00004	132	AAA: ATPase family associated with various cellula	99.51
PRK06893	229	DNA replication initiation factor; Validated	99.51
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.51
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.5
COG0714	329	MoxR-like ATPases [General function prediction onl	99.5
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.5
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.5
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.49
KOG0736	953	consensus Peroxisome assembly factor 2 containing	99.49
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.48
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.48
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.47
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.47
PRK08727	233	hypothetical protein; Validated	99.47
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.47
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	99.47
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	99.46
CHL00206	2281	ycf2 Ycf2; Provisional	99.45
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.45
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.45
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.45
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.44
PRK05642	234	DNA replication initiation factor; Validated	99.44
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.44
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.44
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	99.43
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	99.43
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	99.43
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	99.43
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	99.42
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.41
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.41
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.4
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.4
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.4
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	99.39
COG4650	531	RtcR Sigma54-dependent transcription regulator con	99.38
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.38
PF07726	131	AAA_3: ATPase family associated with various cellu	99.38
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.37
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	99.37
PRK04132	846	replication factor C small subunit; Provisional	99.36
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.36
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	99.36
PRK12422	445	chromosomal replication initiation protein; Provis	99.36
COG0606	490	Predicted ATPase with chaperone activity [Posttran	99.36
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.35
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.35
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.35
PRK06620	214	hypothetical protein; Validated	99.34
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	99.33
KOG0742	630	consensus AAA+-type ATPase [Posttranslational modi	99.33
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.32
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.32
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.3
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	99.3
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.29
CHL00095	821	clpC Clp protease ATP binding subunit	99.29
PRK09087	226	hypothetical protein; Validated	99.28
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	99.28
KOG1942	456	consensus DNA helicase, TBP-interacting protein [R	99.27
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.27
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.26
PRK10865	857	protein disaggregation chaperone; Provisional	99.26
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	99.26
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.26
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	99.24
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	99.24
PRK06871	325	DNA polymerase III subunit delta'; Validated	99.24
smart00350	509	MCM minichromosome maintenance proteins.	99.24
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.23
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	99.22
PRK13765	637	ATP-dependent protease Lon; Provisional	99.21
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.21
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	99.21
PRK06090	319	DNA polymerase III subunit delta'; Validated	99.19
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	99.18
PRK09862	506	putative ATP-dependent protease; Provisional	99.18
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	99.18
PRK07993	334	DNA polymerase III subunit delta'; Validated	99.18
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	99.16
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	99.15
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	99.15
PRK06964	342	DNA polymerase III subunit delta'; Validated	99.15
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.14
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	99.12
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.12
PRK12377	248	putative replication protein; Provisional	99.11
COG0593	408	DnaA ATPase involved in DNA replication initiation	99.1
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	99.08
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.07
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	99.06
PRK08699	325	DNA polymerase III subunit delta'; Validated	99.04
KOG1969	877	consensus DNA replication checkpoint protein CHL12	99.04
PRK05917	290	DNA polymerase III subunit delta'; Validated	99.02
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.01
PRK06526	254	transposase; Provisional	99.01
KOG0740	428	consensus AAA+-type ATPase [Posttranslational modi	99.01
PF10431	81	ClpB_D2-small: C-terminal, D2-small domain, of Clp	99.0
PRK08116	268	hypothetical protein; Validated	99.0
PRK07276	290	DNA polymerase III subunit delta'; Validated	98.95
KOG0732	1080	consensus AAA+-type ATPase containing the bromodom	98.95
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.94
PRK07952	244	DNA replication protein DnaC; Validated	98.93
PRK15455	644	PrkA family serine protein kinase; Provisional	98.92
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	98.89
KOG2680	454	consensus DNA helicase TIP49, TBP-interacting prot	98.88
PRK08181	269	transposase; Validated	98.88
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	98.87
smart00382	148	AAA ATPases associated with a variety of cellular	98.86
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.85
PRK06835	329	DNA replication protein DnaC; Validated	98.83
PRK07132	299	DNA polymerase III subunit delta'; Validated	98.82
PF13173	128	AAA_14: AAA domain	98.81
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	98.8
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	98.79
PRK09183	259	transposase/IS protein; Provisional	98.77
PRK05818	261	DNA polymerase III subunit delta'; Validated	98.76
KOG0990	360	consensus Replication factor C, subunit RFC5 [Repl	98.76
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	98.72
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	98.7
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	98.67
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	98.62
PRK06921	266	hypothetical protein; Provisional	98.6
PRK08939	306	primosomal protein DnaI; Reviewed	98.6
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	98.53
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.53
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	98.53
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	98.53
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.5
COG1241	682	MCM2 Predicted ATPase involved in replication cont	98.48
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	98.47
KOG0736	953	consensus Peroxisome assembly factor 2 containing	98.45
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	98.39
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.38
KOG0478	804	consensus DNA replication licensing factor, MCM4 c	98.36
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	98.35
PF05729	166	NACHT: NACHT domain	98.34
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	98.29
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	98.26
PRK06581	263	DNA polymerase III subunit delta'; Validated	98.2
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.16
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.14
PHA00729	226	NTP-binding motif containing protein	98.12
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.11
KOG1514	767	consensus Origin recognition complex, subunit 1, a	98.11
PHA02774	613	E1; Provisional	98.1
PRK14700	300	recombination factor protein RarA; Provisional	98.02
KOG0480	764	consensus DNA replication licensing factor, MCM6 c	98.02
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.02
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.99
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.95
KOG0477	854	consensus DNA replication licensing factor, MCM2 c	97.88
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.86
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.83
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.83
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.82
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.8
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	97.78
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.77
PHA02624	647	large T antigen; Provisional	97.76
PF12780	268	AAA_8: P-loop containing dynein motor region D4; I	97.76
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.74
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.72
PRK10536	262	hypothetical protein; Provisional	97.69
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	97.68
PRK10867	433	signal recognition particle protein; Provisional	97.68
PRK14974	336	cell division protein FtsY; Provisional	97.65
PRK04296	190	thymidine kinase; Provisional	97.64
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.63
TIGR01613	304	primase_Cterm phage/plasmid primase, P4 family, C-	97.63
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.62
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.62
PHA01747	425	putative ATP-dependent protease	97.61
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	97.6
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.59
TIGR00959	428	ffh signal recognition particle protein. This mode	97.59
PF10923	416	DUF2791: P-loop Domain of unknown function (DUF279	97.58
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	97.58
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.56
PRK08118	167	topology modulation protein; Reviewed	97.55
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.55
PRK07261	171	topology modulation protein; Provisional	97.55
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.54
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.54
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.54
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.53
PRK13695	174	putative NTPase; Provisional	97.52
KOG1808	1856	consensus AAA ATPase containing von Willebrand fac	97.52
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.5
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.49
PRK10416	318	signal recognition particle-docking protein FtsY;	97.48
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	97.46
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.45
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.44
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.43
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.42
KOG0482	721	consensus DNA replication licensing factor, MCM7 c	97.4
TIGR02533	486	type_II_gspE general secretory pathway protein E.	97.4
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.39
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.39
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.38
PRK10436	462	hypothetical protein; Provisional	97.37
PRK06696	223	uridine kinase; Validated	97.37
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.35
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.35
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.34
KOG0481	729	consensus DNA replication licensing factor, MCM5 c	97.34
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.34
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.31
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	97.31
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.3
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.29
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	97.27
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	97.24
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	97.23
PRK06067	234	flagellar accessory protein FlaH; Validated	97.21
PRK00131	175	aroK shikimate kinase; Reviewed	97.21
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	97.2
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	97.19
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.18
cd03246	173	ABCC_Protease_Secretion This family represents the	97.18
PRK05439	311	pantothenate kinase; Provisional	97.15
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.12
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	97.11
COG2766	649	PrkA Putative Ser protein kinase [Signal transduct	97.1
COG4178	604	ABC-type uncharacterized transport system, permeas	97.1
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.1
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.09
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.08
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.07
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.07
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	97.06
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.06
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.06
PRK04220	301	2-phosphoglycerate kinase; Provisional	97.05
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.04
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	97.04
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.04
PRK06547	172	hypothetical protein; Provisional	97.04
KOG1968	871	consensus Replication factor C, subunit RFC1 (larg	97.04
PRK08233	182	hypothetical protein; Provisional	97.01
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	97.01
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	97.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.99
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	96.99
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.99
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.98
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	96.97
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.97
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	96.97
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	96.97
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.97
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.96
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.95
PF14516	331	AAA_35: AAA-like domain	96.95
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.93
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	96.93
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	96.93
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	96.92
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	96.92
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	96.92
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	96.91
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	96.91
PRK03839	180	putative kinase; Provisional	96.91
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.91
PRK13947	171	shikimate kinase; Provisional	96.9
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	96.9
COG1485	367	Predicted ATPase [General function prediction only	96.9
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.89
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	96.89
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.89
PLN02200	234	adenylate kinase family protein	96.87
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	96.87
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.86
KOG0479	818	consensus DNA replication licensing factor, MCM3 c	96.85
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.85
PRK00625	173	shikimate kinase; Provisional	96.85
PF13337	457	Lon_2: Putative ATP-dependent Lon protease	96.85
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	96.84
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	96.84
PRK14532	188	adenylate kinase; Provisional	96.84
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	96.83
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.83
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.82
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	96.82
PRK06762	166	hypothetical protein; Provisional	96.82
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	96.82
TIGR01447	586	recD exodeoxyribonuclease V, alpha subunit. This f	96.82
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	96.81
PRK13851	344	type IV secretion system protein VirB11; Provision	96.81
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	96.8
PRK05541	176	adenylylsulfate kinase; Provisional	96.79
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	96.79
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.79
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	96.77
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	96.77
PF13479	213	AAA_24: AAA domain	96.76
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.76
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.76
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	96.76
PRK13537	306	nodulation ABC transporter NodI; Provisional	96.76
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.76
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	96.76
PRK13764	602	ATPase; Provisional	96.75
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	96.74
PRK13833	323	conjugal transfer protein TrbB; Provisional	96.74
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	96.74
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	96.73
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	96.73
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	96.71
PRK07667	193	uridine kinase; Provisional	96.71
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.71
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	96.71
PRK14531	183	adenylate kinase; Provisional	96.7
KOG0922	674	consensus DEAH-box RNA helicase [RNA processing an	96.7
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	96.69
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	96.68
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	96.67
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	96.67
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	96.67
PRK06217	183	hypothetical protein; Validated	96.65
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.65
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	96.65
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	96.65
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.65
PRK14530	215	adenylate kinase; Provisional	96.64
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	96.63
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	96.63
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.62
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	96.62
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.62
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.62
PRK13948	182	shikimate kinase; Provisional	96.61
PRK05480	209	uridine/cytidine kinase; Provisional	96.61
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.61
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	96.6
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	96.6
cd03215	182	ABC_Carb_Monos_II This family represents domain II	96.6
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	96.6
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	96.59
PRK13949	169	shikimate kinase; Provisional	96.59
COG1643	845	HrpA HrpA-like helicases [DNA replication, recombi	96.59
PTZ00088	229	adenylate kinase 1; Provisional	96.59
PRK00889	175	adenylylsulfate kinase; Provisional	96.59
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	96.59
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	96.58
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	96.58
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.58
PF00519	432	PPV_E1_C: Papillomavirus helicase; InterPro: IPR00	96.57
PRK03846	198	adenylylsulfate kinase; Provisional	96.57
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.57
PRK01184	184	hypothetical protein; Provisional	96.56
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.56
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	96.56
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	96.55
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	96.54
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.54
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.54
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.54
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	96.54
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	96.54
cd01128	249	rho_factor Transcription termination factor rho is	96.53
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.53
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.53
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	96.5
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.5
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	96.49
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.49
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	96.49
PRK09376	416	rho transcription termination factor Rho; Provisio	96.48
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.47
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	96.47
PRK08485	206	DNA polymerase III subunit delta'; Validated	96.46
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	96.46
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.45
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	96.44
PRK05057	172	aroK shikimate kinase I; Reviewed	96.44
PF00270	169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	96.44
PRK14738	206	gmk guanylate kinase; Provisional	96.44

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.2e-93  Score=781.42  Aligned_cols=413  Identities=29%  Similarity=0.455  Sum_probs=374.7

Q ss_pred             hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633            5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF   81 (550)
Q Consensus         5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~   81 (550)
                      ..|+.||+|++++||.||||+|+|+||++||.||+|  |||+|||||||||||||   +++++.. .|   .+++.++++
T Consensus       336 e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~R--YI~dR~LPDKAIDLiDeA~a~~~l~~~-~p---~~l~~~~~~  409 (786)
T COG0542         336 EDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDR--YIPDRFLPDKAIDLLDEAGARVRLEID-KP---EELDELERE  409 (786)
T ss_pred             HHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHh--hcccCCCCchHHHHHHHHHHHHHhccc-CC---cchhHHHHH
Confidence            469999999999999999999999999999999999  99999999999999999   7888888 99   999999999


Q ss_pred             HHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHhh
Q 036633           82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHG  161 (550)
Q Consensus        82 ~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (550)
                      +.+++.|+.++.++ .|..         ++.+               ...+..++.            .....+++++..
T Consensus       410 ~~~l~~e~~~~~~e-~~~~---------~k~~---------------~~~~~~~~~------------~~~~~~~~~~~~  452 (786)
T COG0542         410 LAQLEIEKEALERE-QDEK---------EKKL---------------IDEIIKLKE------------GRIPELEKELEA  452 (786)
T ss_pred             HHHHHHHHHHHhhh-hhHH---------HHHH---------------HHHHHHHhh------------hhhhhHHHHHhh
Confidence            99999999999988 3300         1111               111111110            011123333333


Q ss_pred             hhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-ee
Q 036633          162 KFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GL  240 (550)
Q Consensus       162 ~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~  240 (550)
                       +     ||.++|+++|++|||||+.++.+++.+++.++++.|.++|+||++|+..|+++++++   |+|+.+|++| ++
T Consensus       453 -~-----v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra---RaGL~dp~rPigs  523 (786)
T COG0542         453 -E-----VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA---RAGLGDPNRPIGS  523 (786)
T ss_pred             -c-----cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH---hcCCCCCCCCceE
Confidence             2     999999999999999999999999999999999999999999999999999999999   9999999999 99


Q ss_pred             EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEec
Q 036633          241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLFD  308 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~VlllD  308 (550)
                      |||+||||||||+||++||+.||+   ++.++++||||+|+++|++|+|+|            .||+++|++||||||||
T Consensus       524 FlF~GPTGVGKTELAkaLA~~Lfg---~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlD  600 (786)
T COG0542         524 FLFLGPTGVGKTELAKALAEALFG---DEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLD  600 (786)
T ss_pred             EEeeCCCcccHHHHHHHHHHHhcC---CCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEec
Confidence            999999999999999999999999   999999999999999999999999            99999999999999999


Q ss_pred             cccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhhh-------hhHhhHHHHhccCCCh
Q 036633          309 KIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLT-------ATYGRVNEVTGSLFKP  380 (550)
Q Consensus       309 EIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~-------~~~~~~~~~l~~~f~p  380 (550)
                      |||||||+|+|+|||+||+|  + +||+ |++|||+|||||||||+|+..+.....+       ...+.+...++++|+|
T Consensus       601 EIEKAHpdV~nilLQVlDdG--r-LTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~P  677 (786)
T COG0542         601 EIEKAHPDVFNLLLQVLDDG--R-LTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRP  677 (786)
T ss_pred             hhhhcCHHHHHHHHHHhcCC--e-eecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCH
Confidence            99999999999999999999  9 9999 9999999999999999999998776532       1357788899999999


Q ss_pred             hhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc--
Q 036633          381 SLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ--  457 (550)
Q Consensus       381 ~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~--  457 (550)
                      +|+||+|.+|+|+   ||+.+++.+|+..+|.++..++.++++ ++.+++++.+||++.|| |.|||  |+|+|+|++  
T Consensus       678 EFLNRid~II~F~---~L~~~~l~~Iv~~~L~~l~~~L~~~~i-~l~~s~~a~~~l~~~gyd~~~GA--RpL~R~Iq~~i  751 (786)
T COG0542         678 EFLNRIDEIIPFN---PLSKEVLERIVDLQLNRLAKRLAERGI-TLELSDEAKDFLAEKGYDPEYGA--RPLRRAIQQEI  751 (786)
T ss_pred             HHHhhcccEEecc---CCCHHHHHHHHHHHHHHHHHHHHhCCc-eEEECHHHHHHHHHhccCCCcCc--hHHHHHHHHHH
Confidence            9999999999999   999999999999999999999999999 99999999999999999 99999  999999999  


Q ss_pred             -hhhHHHHHhhhhcCCCccccccch
Q 036633          458 -RPSADHVIDKFLRDAGYNHQSKEE  481 (550)
Q Consensus       458 -~~la~~~l~~~~~~~~~~~i~~~~  481 (550)
                       ++||+.+|.|.+.++..+.+++..
T Consensus       752 ~~~La~~iL~g~~~~~~~v~v~~~~  776 (786)
T COG0542         752 EDPLADEILFGKIEDGGTVKVDVDD  776 (786)
T ss_pred             HHHHHHHHHhcccCCCcEEEEEecC
Confidence             999999999999988888777664

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=100.00  E-value=2.2e-72  Score=641.33  Aligned_cols=453  Identities=21%  Similarity=0.338  Sum_probs=385.8

Q ss_pred             hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633            5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF   81 (550)
Q Consensus         5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~   81 (550)
                      ..|..||+++++.||.||+|.|+|+||.+||+||+|  ||++|+||||||||||+   +++++.++.|   ..++.++++
T Consensus       353 ~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r--yi~~r~LPDKAIdlldea~a~~~~~~~~~p---~~~~~~~~~  427 (852)
T TIGR03345       353 ETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR--YIPGRQLPDKAVSLLDTACARVALSQNATP---AALEDLRRR  427 (852)
T ss_pred             HHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc--ccccccCccHHHHHHHHHHHHHHHhccCCc---hhHHHHHHH
Confidence            468899999999999999999999999999999999  99999999999999999   6788889999   999999999


Q ss_pred             HHHHHHHHHHHhhccC-CchhhhhhHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHhh----hhcc-HHH
Q 036633           82 LRRAVVEYEQLVKEDT-DHSSRSFWLRQIDN---ELKDAFFELVSFVKL--RMQVEYDDFVSCVHDAK----RVKD-YSK  150 (550)
Q Consensus        82 ~~~~~~e~~~~~~~~~-d~~~~~~~~~~~~~---~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~----~~~~-~~~  150 (550)
                      +.+++.++..+.++.. +.....+ ..++++   ++++++..+.+.|+.  .+..++...+.+.....    ...+ ...
T Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (852)
T TIGR03345       428 IAALELELDALEREAALGADHDER-LAELRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRA  506 (852)
T ss_pred             HHHHHHHHHHHhhhhccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHH
Confidence            9999999998876521 1111112 333333   447788889999984  33333333332221110    0000 001


Q ss_pred             HHHHHHHHHhhhhcC----CCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcch
Q 036633          151 ILDQIDARVHGKFKE----KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPK  226 (550)
Q Consensus       151 ~~~~~~~~~~~~~~~----~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~  226 (550)
                      ....+++++..++..    ...|+.++|++||++|||||+.++..++.+++.+|++.|+++|+||++|++.|+.++.++ 
T Consensus       507 ~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~-  585 (852)
T TIGR03345       507 QLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA-  585 (852)
T ss_pred             HHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH-
Confidence            112344455444432    467999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HH
Q 036633          227 AAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SL  293 (550)
Q Consensus       227 ~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~l  293 (550)
                        ++|+.+|++| ++|||+||||||||++|++||+.+|+   +..+++++||++|++.|++++|+|            .|
T Consensus       586 --~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~---~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L  660 (852)
T TIGR03345       586 --RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG---GEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVL  660 (852)
T ss_pred             --hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC---CCcceEEEeHHHhhhhhhhccccCCCCCcccccccchH
Confidence              9999999999 99999999999999999999999998   788999999999999999999987            68


Q ss_pred             HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhhhh-------
Q 036633          294 AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLTA-------  365 (550)
Q Consensus       294 t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~~-------  365 (550)
                      +++++++|++||+||||||+||++++.|++++++|  + ++|+ |+.|||+|++||||||.|.+.+.....+.       
T Consensus       661 ~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g--~-l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~  737 (852)
T TIGR03345       661 TEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKG--V-MEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPE  737 (852)
T ss_pred             HHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcc--e-eecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchH
Confidence            99999999999999999999999999999999999  8 9999 99999999999999999998887644221       


Q ss_pred             -hHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC-CCccccCCHHHHHHHHhcCc-c
Q 036633          366 -TYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS-KAVIVCPSTSALVHIASNAA-R  442 (550)
Q Consensus       366 -~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~-~~~~l~~~~~a~~~L~~~~~-~  442 (550)
                       ....+.+.+.++|+|+|++||+ +|+|.   ||+.+++.+|+...+.++..++..+ |+ .+.++++++++|++.+| +
T Consensus       738 ~~~~~~~~~~~~~f~PEflnRi~-iI~F~---pLs~e~l~~Iv~~~L~~l~~rl~~~~gi-~l~i~d~a~~~La~~g~~~  812 (852)
T TIGR03345       738 ALLEALRPELLKVFKPAFLGRMT-VIPYL---PLDDDVLAAIVRLKLDRIARRLKENHGA-ELVYSEALVEHIVARCTEV  812 (852)
T ss_pred             HHHHHHHHHHHHhccHHHhccee-EEEeC---CCCHHHHHHHHHHHHHHHHHHHHHhcCc-eEEECHHHHHHHHHHcCCC
Confidence             1356778889999999999996 99999   9999999999999999998888765 88 99999999999999999 9


Q ss_pred             cCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCcccccc
Q 036633          443 KYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSK  479 (550)
Q Consensus       443 ~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~  479 (550)
                      .+||  |+|+++|++   +|||..++.+........+|++
T Consensus       813 ~~GA--R~L~r~Ie~~i~~~la~~~l~~~~~~~~~~~~~~  850 (852)
T TIGR03345       813 ESGA--RNIDAILNQTLLPELSRQILERLAAGEPIERIHL  850 (852)
T ss_pred             CCCh--HHHHHHHHHHHHHHHHHHHHhChhcCCCeeEEEE
Confidence            9999  999999999   9999999999887766555543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=100.00  E-value=7.5e-70  Score=624.66  Aligned_cols=454  Identities=30%  Similarity=0.442  Sum_probs=395.8

Q ss_pred             hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633            5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF   81 (550)
Q Consensus         5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~   81 (550)
                      ..+..||++++++||.||+|.|+|+||.+||.||+|  ||++|+||||||||||+   ++++...+.|   +.++.++++
T Consensus       339 ~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~--yi~~r~lPdkAidlld~a~a~~~~~~~~~~---~~~~~~~~~  413 (852)
T TIGR03346       339 EDTISILRGLKERYEVHHGVRITDPAIVAAATLSHR--YITDRFLPDKAIDLIDEAAARIRMEIDSKP---EELDELDRR  413 (852)
T ss_pred             HHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccc--cccccCCchHHHHHHHHHHHHHHhhccCCc---hhHHHHHHH
Confidence            568899999999999999999999999999999999  99999999999999999   6788888999   999999999


Q ss_pred             HHHHHHHHHHHhhccCCchhhhhhHHHHHHHH---HHHHHHHHHHHHH--HH-------HHHHHHHHHhHHHhhhhccHH
Q 036633           82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNEL---KDAFFELVSFVKL--RM-------QVEYDDFVSCVHDAKRVKDYS  149 (550)
Q Consensus        82 ~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~l~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~  149 (550)
                      +.+++.|++++.++ .+.....+ .+++++++   +.++..+...|..  ..       ++++...+.++..+.+.+++.
T Consensus       414 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (852)
T TIGR03346       414 IIQLEIEREALKKE-KDEASKER-LEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLA  491 (852)
T ss_pred             HHHHHHHHHHHHhc-chhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            99999999999776 44444445 55555444   7788889999973  22       233333333444455555555


Q ss_pred             HHHH-------HHHHHHhhhhc----------CCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcH
Q 036633          150 KILD-------QIDARVHGKFK----------EKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQN  212 (550)
Q Consensus       150 ~~~~-------~~~~~~~~~~~----------~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~  212 (550)
                      ++.+       .+++.+..++.          ....|+.++|+.|+++|||||+.++..++.+++.++++.|.++|+||+
T Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~  571 (852)
T TIGR03346       492 KAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQD  571 (852)
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCCh
Confidence            5432       23333432221          136799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh
Q 036633          213 DAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD  291 (550)
Q Consensus       213 ~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG  291 (550)
                      .|++.|..++.+.   ++|+.+|++| ++|||+||||||||++|++||+.+++   +..+++++||++|++.+.+++++|
T Consensus       572 ~av~~v~~~i~~~---~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~---~~~~~i~~d~s~~~~~~~~~~l~g  645 (852)
T TIGR03346       572 EAVEAVSDAIRRS---RAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD---DEDAMVRIDMSEYMEKHSVARLIG  645 (852)
T ss_pred             HHHHHHHHHHHHH---hccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC---CCCcEEEEechhhcccchHHHhcC
Confidence            9999999999999   9999999999 99999999999999999999999999   888999999999999999998875


Q ss_pred             ------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHH
Q 036633          292 ------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQV  358 (550)
Q Consensus       292 ------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~  358 (550)
                                  .|+++++.+|++|||||||||+||++++.|+++|++|  + ++|+ |+.+||+|++||||||.|++.+
T Consensus       646 ~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g--~-l~d~~g~~vd~rn~iiI~TSn~g~~~~  722 (852)
T TIGR03346       646 APPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDG--R-LTDGQGRTVDFRNTVIIMTSNLGSQFI  722 (852)
T ss_pred             CCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcC--c-eecCCCeEEecCCcEEEEeCCcchHhH
Confidence                        7999999999999999999999999999999999999  8 9999 9999999999999999999877


Q ss_pred             HHhhhhh----hHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHH
Q 036633          359 YEVMLTA----TYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALV  434 (550)
Q Consensus       359 ~~~~~~~----~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~  434 (550)
                      .......    ....+.+.+.+.|+|+|++|||.+++|.   ||+.+++..|+...+..+.+++..+|+ .+.+++++++
T Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~---PL~~e~l~~I~~l~L~~l~~~l~~~~~-~l~i~~~a~~  798 (852)
T TIGR03346       723 QELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFH---PLGREQIARIVEIQLGRLRKRLAERKI-TLELSDAALD  798 (852)
T ss_pred             hhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecC---CcCHHHHHHHHHHHHHHHHHHHHHCCC-eecCCHHHHH
Confidence            6543221    1345667788999999999999999999   999999999999999999999888888 8999999999


Q ss_pred             HHHhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCccccccc
Q 036633          435 HIASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKE  480 (550)
Q Consensus       435 ~L~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~  480 (550)
                      +|++++| +.+|+  |+|+++|++   +||++.++.|++.++..+.|++.
T Consensus       799 ~L~~~~~~~~~ga--R~L~~~i~~~i~~~l~~~~l~~~~~~~~~~~~~~~  846 (852)
T TIGR03346       799 FLAEAGYDPVYGA--RPLKRAIQREIENPLAKKILAGEVADGDTIVVDVE  846 (852)
T ss_pred             HHHHhCCCCCCCc--hhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEee
Confidence            9999999 88999  999999999   99999999999999988888764

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=100.00  E-value=7.8e-70  Score=622.18  Aligned_cols=454  Identities=28%  Similarity=0.444  Sum_probs=401.4

Q ss_pred             hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633            5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF   81 (550)
Q Consensus         5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~   81 (550)
                      ..|..||++++++||.||+|.|+|+|+.+||.||+|  ||++|+|||||||++|+   .++++..++|   +.|+++++.
T Consensus       344 ~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~r--y~~~~~~pdkAi~LiD~aaa~~rl~~~~kp---~~L~rLer~  418 (857)
T PRK10865        344 EDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR--YIADRQLPDKAIDLIDEAASSIRMQIDSKP---EELDRLDRR  418 (857)
T ss_pred             HHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhc--cccCCCCChHHHHHHHHHhcccccccccCh---HHHHHHHHH
Confidence            468889999999999999999999999999999999  99999999999999999   7788889999   999999999


Q ss_pred             HHHHHHHHHHHhhccCCchhhhhhHHHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHHHHhHHHhhhhccHH
Q 036633           82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNEL---KDAFFELVSFVKL---------RMQVEYDDFVSCVHDAKRVKDYS  149 (550)
Q Consensus        82 ~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  149 (550)
                      +..++.|++.+.++ .+..+..+ ++++++++   +.++..+.++|+.         ..+.++++++.+++.+.+.+++.
T Consensus       419 l~~L~~E~e~l~~e-~~~~~~~~-~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~  496 (857)
T PRK10865        419 IIQLKLEQQALMKE-SDEASKKR-LDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLA  496 (857)
T ss_pred             HHHHHHHHHHHHhh-hhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            99999999999877 44455555 66666665   7778889999983         23345555566666777777766


Q ss_pred             HHHH-------HHHHHHhhhhcC--------CCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHH
Q 036633          150 KILD-------QIDARVHGKFKE--------KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDA  214 (550)
Q Consensus       150 ~~~~-------~~~~~~~~~~~~--------~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~a  214 (550)
                      .+.+       .+++++..++..        ...|+.++|++||++|||||++++..++.+++.+++..|.++|+||+.|
T Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~a  576 (857)
T PRK10865        497 RMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEA  576 (857)
T ss_pred             hHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHH
Confidence            5544       344444433211        4679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--
Q 036633          215 IDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--  291 (550)
Q Consensus       215 i~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--  291 (550)
                      ++.|..++.+.   ++|+.+|++| ++++|+||||||||++|++||+.+++   +..+++++||++|.+.+.+++++|  
T Consensus       577 i~~l~~~i~~~---~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~---~~~~~i~id~se~~~~~~~~~LiG~~  650 (857)
T PRK10865        577 VEAVSNAIRRS---RAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD---SDDAMVRIDMSEFMEKHSVSRLVGAP  650 (857)
T ss_pred             HHHHHHHHHHH---HhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc---CCCcEEEEEhHHhhhhhhHHHHhCCC
Confidence            99999999999   9999999999 99999999999999999999999998   778999999999999999998885  


Q ss_pred             ----------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHH
Q 036633          292 ----------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       292 ----------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                                .++++++.+|++||+||||+++||++++.|+++|++|  + ++|+ |+++||+|++||||||.|++.+..
T Consensus       651 pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g--~-l~d~~gr~vd~rn~iiI~TSN~g~~~~~~  727 (857)
T PRK10865        651 PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDG--R-LTDGQGRTVDFRNTVVIMTSNLGSDLIQE  727 (857)
T ss_pred             CcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhC--c-eecCCceEEeecccEEEEeCCcchHHHHH
Confidence                      5899999999999999999999999999999999999  8 9999 999999999999999999887655


Q ss_pred             hhhhhh----HhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633          361 VMLTAT----YGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI  436 (550)
Q Consensus       361 ~~~~~~----~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L  436 (550)
                      ..+...    ...+...+.+.|+|+|++|+|.+|+|.   ||+.+++..|+..++.++..++..+|+ .+.++++++++|
T Consensus       728 ~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~---PL~~edl~~Iv~~~L~~l~~rl~~~gi-~l~is~~al~~L  803 (857)
T PRK10865        728 RFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFH---PLGEQHIASIAQIQLQRLYKRLEERGY-EIHISDEALKLL  803 (857)
T ss_pred             hccccchHHHHHHHHHHHcccccHHHHHhCCeeEecC---CCCHHHHHHHHHHHHHHHHHHHHhCCC-cCcCCHHHHHHH
Confidence            332211    344566788999999999999999999   999999999999999999888877888 899999999999


Q ss_pred             HhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCccccccc
Q 036633          437 ASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKE  480 (550)
Q Consensus       437 ~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~  480 (550)
                      +.++| +.+||  |+|+|+|++   +|||..++.|.+.+++.+.+++.
T Consensus       804 ~~~gy~~~~GA--RpL~r~I~~~i~~~la~~iL~g~~~~~~~~~~~~~  849 (857)
T PRK10865        804 SENGYDPVYGA--RPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVN  849 (857)
T ss_pred             HHcCCCccCCh--HHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEEEE
Confidence            99999 99999  999999999   99999999999999988888764

>CHL00095 clpC Clp protease ATP binding subunit

Probab=100.00  E-value=3.3e-69  Score=617.82  Aligned_cols=426  Identities=27%  Similarity=0.394  Sum_probs=374.4

Q ss_pred             hhhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHH
Q 036633            4 HKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKY   80 (550)
Q Consensus         4 ~~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~   80 (550)
                      ...+..||++++++||+||+|.|+|+|+.+++.||+|  ||++|+||||||||||+   ++++...+.|   ..++.+++
T Consensus       343 ~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~--yi~~r~lPdkaidlld~a~a~~~~~~~~~~---~~~~~~~~  417 (821)
T CHL00095        343 VEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ--YIADRFLPDKAIDLLDEAGSRVRLINSRLP---PAARELDK  417 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc--cCccccCchHHHHHHHHHHHHHHhhccCCc---hhHHHHHH
Confidence            3568899999999999999999999999999999999  99999999999999999   6778778899   99999999


Q ss_pred             HHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHh
Q 036633           81 FLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVH  160 (550)
Q Consensus        81 ~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (550)
                      ++.+++.+++++.++ .+...... +..-..++++++..+...|...                            .    
T Consensus       418 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------~----  463 (821)
T CHL00095        418 ELREILKDKDEAIRE-QDFETAKQ-LRDREMEVRAQIAAIIQSKKTE----------------------------E----  463 (821)
T ss_pred             HHHHHHHHHHHHHhC-cchHHHHH-HHHHHHHHHHHHHHHHHHHHhh----------------------------h----
Confidence            999999999988776 33222111 2222223344455555555420                            0    


Q ss_pred             hhhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-e
Q 036633          161 GKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-G  239 (550)
Q Consensus       161 ~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~  239 (550)
                      .-......||.++|++++++|||||+.++..++.+++.++++.|.++|+||++|+..|+.++.+.   ++|+.+|++| +
T Consensus       464 ~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~---~~gl~~~~~p~~  540 (821)
T CHL00095        464 EKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA---RVGLKNPNRPIA  540 (821)
T ss_pred             cccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH---hhcccCCCCCce
Confidence            00112467999999999999999999999999999999999999999999999999999999999   9999999999 9


Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEe
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLF  307 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~Vlll  307 (550)
                      +|||+||||||||++|++||+.+|+   +..+++++||++|++.|++++++|            .|+++++.+|++||+|
T Consensus       541 ~~lf~Gp~GvGKt~lA~~LA~~l~~---~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~Vvll  617 (821)
T CHL00095        541 SFLFSGPTGVGKTELTKALASYFFG---SEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLF  617 (821)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcC---CccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEE
Confidence            9999999999999999999999999   788999999999999999999886            6999999999999999


Q ss_pred             ccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhh-----h-------hhh----HhhH
Q 036633          308 DKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVM-----L-------TAT----YGRV  370 (550)
Q Consensus       308 DEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~-----~-------~~~----~~~~  370 (550)
                      |||||+||++++.|+++||+|  + ++|+ |+.+||+|++||||||.|+..+....     .       ...    ...+
T Consensus       618 Deieka~~~v~~~Llq~le~g--~-~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~  694 (821)
T CHL00095        618 DEIEKAHPDIFNLLLQILDDG--R-LTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLV  694 (821)
T ss_pred             CChhhCCHHHHHHHHHHhccC--c-eecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHH
Confidence            999999999999999999999  8 9999 99999999999999999998765321     0       001    2445


Q ss_pred             HHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCccc
Q 036633          371 NEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGE  449 (550)
Q Consensus       371 ~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R  449 (550)
                      .+.++++|+|+|++|+|.+|+|.   ||+.+++.+|+...|.++..++..+|+ .+.+++++.++|++.+| +.+||  |
T Consensus       695 ~~~~~~~f~peflnRid~ii~F~---pL~~~~l~~Iv~~~l~~l~~rl~~~~i-~l~~~~~~~~~La~~~~~~~~GA--R  768 (821)
T CHL00095        695 NEELKQFFRPEFLNRLDEIIVFR---QLTKNDVWEIAEIMLKNLFKRLNEQGI-QLEVTERIKTLLIEEGYNPLYGA--R  768 (821)
T ss_pred             HHHHHHhcCHHHhccCCeEEEeC---CCCHHHHHHHHHHHHHHHHHHHHHCCc-EEEECHHHHHHHHHhcCCCCCCh--h
Confidence            67788999999999999999999   999999999999999999999988899 99999999999999999 99999  9


Q ss_pred             HHHHHHcc---hhhHHHHHhhhhcCCCccccccchhh
Q 036633          450 GLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKEETE  483 (550)
Q Consensus       450 ~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~~~~  483 (550)
                      +|+++|++   +||++.++.+.+..+..+.+++....
T Consensus       769 ~l~r~i~~~i~~~l~~~~l~~~~~~g~~v~~~~~~~~  805 (821)
T CHL00095        769 PLRRAIMRLLEDPLAEEVLSFKIKPGDIIIVDVNDEK  805 (821)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCccCCCCEEEEEEeCCC
Confidence            99999999   99999999999999988888775433

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=100.00  E-value=4.9e-65  Score=570.90  Aligned_cols=362  Identities=24%  Similarity=0.338  Sum_probs=329.9

Q ss_pred             hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh-hhhhcccCCCCchHHHHHHHHHHH
Q 036633            5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK-GIKRCLNSRDKYQKELDKHKYFLR   83 (550)
Q Consensus         5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~-~~~~~~~~~~~~~~~l~~l~~~~~   83 (550)
                      ..|+.||++++++||.||+|.|+|+|+.+||.||.|  ||++|+||||||||||+ +.+...  .|   .          
T Consensus       352 ~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~r--yi~~r~lPdKaidlldea~a~~~~--~~---~----------  414 (758)
T PRK11034        352 EETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK--YINDRHLPDKAIDVIDEAGARARL--MP---V----------  414 (758)
T ss_pred             HHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhc--cccCccChHHHHHHHHHHHHhhcc--Cc---c----------
Confidence            468999999999999999999999999999999999  99999999999999999 333221  13   0          


Q ss_pred             HHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHhhhh
Q 036633           84 RAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKF  163 (550)
Q Consensus        84 ~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (550)
                                 .        .                                                           
T Consensus       415 -----------~--------~-----------------------------------------------------------  416 (758)
T PRK11034        415 -----------S--------K-----------------------------------------------------------  416 (758)
T ss_pred             -----------c--------c-----------------------------------------------------------
Confidence                       0        0                                                           


Q ss_pred             cCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEE
Q 036633          164 KEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFL  242 (550)
Q Consensus       164 ~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lL  242 (550)
                       ....|+.++|++++++|||||+..+..++.+++.+++..|+++|+||++|++.|..++.+.   ++|+.++++| ++||
T Consensus       417 -~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~---~~gl~~~~kp~~~~L  492 (758)
T PRK11034        417 -RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMS---RAGLGHEHKPVGSFL  492 (758)
T ss_pred             -cccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHH---hccccCCCCCcceEE
Confidence             0124899999999999999999999999999999999999999999999999999999999   9999999999 9999


Q ss_pred             EeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEeccc
Q 036633          243 FAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLFDKI  310 (550)
Q Consensus       243 f~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~VlllDEI  310 (550)
                      |+||||||||++|+++|+.+..      +|+++||++|++.+++++++|            .++++++++|++|||||||
T Consensus       493 f~GP~GvGKT~lAk~LA~~l~~------~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEi  566 (758)
T PRK11034        493 FAGPTGVGKTEVTVQLSKALGI------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI  566 (758)
T ss_pred             EECCCCCCHHHHHHHHHHHhCC------CcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccH
Confidence            9999999999999999999976      999999999999999999987            6899999999999999999


Q ss_pred             cccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhh-h---hhhHhhHHHHhccCCChhhhhh
Q 036633          311 EKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVM-L---TATYGRVNEVTGSLFKPSLLKL  385 (550)
Q Consensus       311 eka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~-~---~~~~~~~~~~l~~~f~p~ll~R  385 (550)
                      ||+||++++.|+++||+|  + ++|+ |+.+||+|++||||||.|.+.+.... +   ......+.+.++..|+|+|++|
T Consensus       567 eka~~~v~~~LLq~ld~G--~-ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~R  643 (758)
T PRK11034        567 EKAHPDVFNLLLQVMDNG--T-LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNR  643 (758)
T ss_pred             hhhhHHHHHHHHHHHhcC--e-eecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHcc
Confidence            999999999999999999  8 9999 99999999999999999987765422 1   1123445677889999999999


Q ss_pred             ccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc---hhhH
Q 036633          386 LDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ---RPSA  461 (550)
Q Consensus       386 id~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~---~~la  461 (550)
                      ||.+|+|.   ||+.+++.+|+..+|.++.+++..+|+ .+.++++++++|++.+| +.+||  |+|+++|++   +|||
T Consensus       644 id~ii~f~---~L~~~~l~~I~~~~l~~~~~~l~~~~i-~l~~~~~~~~~l~~~~~~~~~GA--R~l~r~i~~~l~~~la  717 (758)
T PRK11034        644 LDNIIWFD---HLSTDVIHQVVDKFIVELQAQLDQKGV-SLEVSQEARDWLAEKGYDRAMGA--RPMARVIQDNLKKPLA  717 (758)
T ss_pred             CCEEEEcC---CCCHHHHHHHHHHHHHHHHHHHHHCCC-CceECHHHHHHHHHhCCCCCCCC--chHHHHHHHHHHHHHH
Confidence            99999999   999999999999999999999988999 99999999999999999 99999  999999999   9999


Q ss_pred             HHHHhhhhcCCCccccccc
Q 036633          462 DHVIDKFLRDAGYNHQSKE  480 (550)
Q Consensus       462 ~~~l~~~~~~~~~~~i~~~  480 (550)
                      +.++.|.+.+++.+.+++.
T Consensus       718 ~~il~~~~~~~~~~~v~~~  736 (758)
T PRK11034        718 NELLFGSLVDGGQVTVALD  736 (758)
T ss_pred             HHHHhCcccCCCEEEEEEE
Confidence            9999999999998888775

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=100.00  E-value=1.4e-63  Score=565.51  Aligned_cols=361  Identities=26%  Similarity=0.400  Sum_probs=328.0

Q ss_pred             hhhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHhhh-hhcccCCCCchHHHHHHHHHH
Q 036633            4 HKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGI-KRCLNSRDKYQKELDKHKYFL   82 (550)
Q Consensus         4 ~~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~~~-~~~~~~~~~~~~~l~~l~~~~   82 (550)
                      ...|.+||++++++||.||+|.|+|+||.+||.+|+|  ||++|+||||||||||+.+ +....  |             
T Consensus       347 ~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r--yi~~r~~P~kai~lld~a~a~~~~~--~-------------  409 (731)
T TIGR02639       347 IEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR--YINDRFLPDKAIDVIDEAGASFRLR--P-------------  409 (731)
T ss_pred             HHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc--ccccccCCHHHHHHHHHhhhhhhcC--c-------------
Confidence            3568999999999999999999999999999999999  9999999999999999932 22111  1             


Q ss_pred             HHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHhhh
Q 036633           83 RRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGK  162 (550)
Q Consensus        83 ~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (550)
                                  .  .                                                                
T Consensus       410 ------------~--~----------------------------------------------------------------  411 (731)
T TIGR02639       410 ------------K--A----------------------------------------------------------------  411 (731)
T ss_pred             ------------c--c----------------------------------------------------------------
Confidence                        0  0                                                                


Q ss_pred             hcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeE
Q 036633          163 FKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLF  241 (550)
Q Consensus       163 ~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~l  241 (550)
                       .....|+.++|+++++.|||||+..+..++..++.+++..|+++|+||++|++.|.+++.+.   ++|+.+|++| +++
T Consensus       412 -~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~---~~g~~~~~~p~~~~  487 (731)
T TIGR02639       412 -KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRS---RAGLGNPNKPVGSF  487 (731)
T ss_pred             -ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHH---hcCCCCCCCCceeE
Confidence             00245999999999999999999999999999999999999999999999999999999999   9999999999 999


Q ss_pred             EEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEecc
Q 036633          242 LFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLFDK  309 (550)
Q Consensus       242 Lf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~VlllDE  309 (550)
                      ||+||||||||++|++||+.++.      +++++||++|++.|++++++|            .++++++.+|++||+|||
T Consensus       488 lf~Gp~GvGKT~lA~~la~~l~~------~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDE  561 (731)
T TIGR02639       488 LFTGPTGVGKTELAKQLAEALGV------HLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDE  561 (731)
T ss_pred             EEECCCCccHHHHHHHHHHHhcC------CeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEec
Confidence            99999999999999999999977      899999999999999999987            589999999999999999


Q ss_pred             ccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhh----hhhhHhhHHHHhccCCChhhhh
Q 036633          310 IEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVM----LTATYGRVNEVTGSLFKPSLLK  384 (550)
Q Consensus       310 Ieka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~----~~~~~~~~~~~l~~~f~p~ll~  384 (550)
                      |||+||++++.|+++||+|  + ++|+ |+.+||+|++||||||.|+..+....    .......+...+++.|+|+|++
T Consensus       562 ieka~~~~~~~Ll~~ld~g--~-~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~  638 (731)
T TIGR02639       562 IEKAHPDIYNILLQVMDYA--T-LTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN  638 (731)
T ss_pred             hhhcCHHHHHHHHHhhccC--e-eecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh
Confidence            9999999999999999999  8 9999 99999999999999999987765421    1112345677888999999999


Q ss_pred             hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc---hhh
Q 036633          385 LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ---RPS  460 (550)
Q Consensus       385 Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~---~~l  460 (550)
                      |||.+|+|.   ||+.+++.+|+.+.+.++.+++..+|+ .+.++++++++|++.+| +.+||  |+|+++|++   +||
T Consensus       639 Rid~Vi~F~---pLs~e~l~~Iv~~~L~~l~~~l~~~~~-~l~i~~~a~~~La~~~~~~~~Ga--R~l~r~i~~~~~~~l  712 (731)
T TIGR02639       639 RLDAIIHFN---PLSEEVLEKIVQKFVDELSKQLNEKNI-KLELTDDAKKYLAEKGYDEEFGA--RPLARVIQEEIKKPL  712 (731)
T ss_pred             cCCeEEEcC---CCCHHHHHHHHHHHHHHHHHHHHhCCC-eEEeCHHHHHHHHHhCCCcccCc--hHHHHHHHHHhHHHH
Confidence            999999999   999999999999999999999988899 99999999999999999 99999  999999999   999


Q ss_pred             HHHHHhhhhcCCCccccc
Q 036633          461 ADHVIDKFLRDAGYNHQS  478 (550)
Q Consensus       461 a~~~l~~~~~~~~~~~i~  478 (550)
                      ++.++.|.+.+++.+.++
T Consensus       713 ~~~~l~~~~~~~~~~~~~  730 (731)
T TIGR02639       713 SDEILFGKLKKGGSVKVD  730 (731)
T ss_pred             HHHHHhCcCCCCCEEEEe
Confidence            999999999888776553

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-64  Score=559.31  Aligned_cols=443  Identities=25%  Similarity=0.340  Sum_probs=381.1

Q ss_pred             HHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHHHH
Q 036633            7 LVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYFLR   83 (550)
Q Consensus         7 ~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~~~   83 (550)
                      |..||++++++||-||||.|+|+|++.|+.+|.|  |++.|+|||+|||+.||   .++++..+.|   +.|+.+++...
T Consensus       355 ~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~--~~t~r~lpd~aidl~dEa~a~~~~~~~~lP---~wL~~~~~~~~  429 (898)
T KOG1051|consen  355 LSLILPGLSERYEVHHGVRISDESLFSAAQLSAR--YITLSFLPDCAIDLEDEAAALVKSQAESLP---PWLQNLERVDI  429 (898)
T ss_pred             hhhhhhhhhhhhccccCCcccccccccccchhhh--hcccCcCchhcccHHHHHHHHHhhhhhhCC---HHHHhhhhhhh
Confidence            7889999999999999999999999999999999  99999999999999999   6788888999   99999999999


Q ss_pred             HHHHHHHHHhhccCCchhhhhhHHHHHHHH---HHHHHHHHHHHHH--HHHHHH-------HHHHHhHHHhhhhccHHHH
Q 036633           84 RAVVEYEQLVKEDTDHSSRSFWLRQIDNEL---KDAFFELVSFVKL--RMQVEY-------DDFVSCVHDAKRVKDYSKI  151 (550)
Q Consensus        84 ~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~l~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~  151 (550)
                      .++.|+.+|+++ .|.++..+ +.  .+.+   +.....+...|+.  .+.+++       +.... ++.+++..|+..+
T Consensus       430 ~~~~e~~~L~kk-~d~~~h~r-~~--~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~-~~k~~r~~d~~~~  504 (898)
T KOG1051|consen  430 KLQDEISELQKK-WNQALHKR-PS--LESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSL-LAKAHRPNDYTRE  504 (898)
T ss_pred             hhHHHHHHHHHh-hhhhhccc-cc--cccccccccccccchhhhccchhHHhhhccccCCcccchh-hhcccCCCCcchh
Confidence            999999999988 55444333 32  2222   4455567777762  333333       23333 5567777777766


Q ss_pred             HH----HHH-HHHhhhhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcch
Q 036633          152 LD----QID-ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPK  226 (550)
Q Consensus       152 ~~----~~~-~~~~~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~  226 (550)
                      .+    .+. ++..  +......++.+|+.++++|||+|.....+.+.+++..|++.|.++|+||++|+..|+.++.++ 
T Consensus       505 ~~l~~~~~p~~~~~--~~~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s-  581 (898)
T KOG1051|consen  505 TDLRYGRIPDELSE--KSNDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRS-  581 (898)
T ss_pred             hhccccccchhhhh--hcccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhh-
Confidence            54    111 1111  111222289999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HH
Q 036633          227 AAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SL  293 (550)
Q Consensus       227 ~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~l  293 (550)
                        ++|+.+| +| ++|+|.||+|||||.||++||.++|+   ++..|+++|||+|++   +++++|            +|
T Consensus       582 --r~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fg---se~~~IriDmse~~e---vskligsp~gyvG~e~gg~L  652 (898)
T KOG1051|consen  582 --RAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFG---SEENFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQL  652 (898)
T ss_pred             --hcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcC---CccceEEechhhhhh---hhhccCCCcccccchhHHHH
Confidence              9999999 77 99999999999999999999999999   999999999999998   888877            89


Q ss_pred             HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhh-----h---
Q 036633          294 AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVML-----T---  364 (550)
Q Consensus       294 t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~-----~---  364 (550)
                      |++++++||+|||||||||||+++++.|+|++|+|  + ++|+ |+.|||+|+|||||||.|+..+.....     .   
T Consensus       653 teavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G--r-ltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~  729 (898)
T KOG1051|consen  653 TEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG--R-LTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMD  729 (898)
T ss_pred             HHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC--c-cccCCCcEeeccceEEEEecccchHhhhcccccccccccch
Confidence            99999999999999999999999999999999999  9 9999 999999999999999999886654332     1   


Q ss_pred             -------hhHhhHHHHhc----cCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633          365 -------ATYGRVNEVTG----SLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL  433 (550)
Q Consensus       365 -------~~~~~~~~~l~----~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~  433 (550)
                             ..+..+.+..+    .+|+|+|++|+|.++.|.   |++.+++.+|+...+.++..++...++ .+.+++.+.
T Consensus       730 ~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~---~l~~~~~~~i~~~~~~e~~~r~~~~~~-~~~v~~~~~  805 (898)
T KOG1051|consen  730 EKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNL---PLDRDELIEIVNKQLTEIEKRLEEREL-LLLVTDRVD  805 (898)
T ss_pred             hhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeec---ccchhhHhhhhhhHHHHHHHHhhhhHH-HHHHHHHHH
Confidence                   12355667777    899999999999999999   999999999999999999999988888 899999999


Q ss_pred             HHHHhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCccccccch
Q 036633          434 VHIASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKEE  481 (550)
Q Consensus       434 ~~L~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~~  481 (550)
                      ++++..+| +.|||  |+|++.|+.   +.++..++ +.++++..+.|....
T Consensus       806 ~~v~~~~~d~~ygA--r~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~~  854 (898)
T KOG1051|consen  806 DKVLFKGYDFDYGA--RPIKRSIEERFENRLAEALL-GEVEDGLTERILVAD  854 (898)
T ss_pred             hhhhhcCcChHHHh--hHHHHHHHHHHHHHHhhhhe-eeecCCceEEEEecc
Confidence            99999999 99999  999999999   89999988 888887777666644

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=100.00  E-value=2.4e-32  Score=287.19  Aligned_cols=243  Identities=20%  Similarity=0.192  Sum_probs=190.2

Q ss_pred             HHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC----cC-----C-CeeEEEeccCCCcHHHHHHHHHHHhccC
Q 036633          196 RYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS----RR-----Q-LGLFLFAGPNCSGKAELAKAIANELYDN  265 (550)
Q Consensus       196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~----~~-----~-p~~lLf~Gp~GvGKT~lAk~la~~l~~~  265 (550)
                      ....++..|.+.|+||++|++.++.++..+   +.++..    +.     . ++++||+||||||||++|++||+.+.. 
T Consensus        67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h---~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~-  142 (413)
T TIGR00382        67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNH---YKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV-  142 (413)
T ss_pred             CHHHHHHHhcceecCHHHHHHHHHHHHHHH---HhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC-
Confidence            457889999999999999999999999776   566543    11     1 268999999999999999999998866 


Q ss_pred             CCCCCceeEEecCCCCchhhhhh-HHhHHHHHHHhCC-------CCeEEeccccccCH--------------HHHHHHHH
Q 036633          266 NDNDNHLIHFDMGNYTELESIKH-FFDSLAALVKKRP-------YSVVLFDKIEKANS--------------SILNLLLK  323 (550)
Q Consensus       266 ~~~~~~li~id~s~~~~~~~~s~-liG~lt~al~~~p-------~~VlllDEIeka~~--------------~v~~~Ll~  323 (550)
                           +|..+|++.+.+...+.. .-+.++..++..+       .+||||||||++++              ++|+.||+
T Consensus       143 -----pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~  217 (413)
T TIGR00382       143 -----PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLK  217 (413)
T ss_pred             -----CeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHH
Confidence                 999999988765433221 1124555554433       46999999999998              79999999


Q ss_pred             hhhhcccccccc---C-CeEeecCCeEEEEeCCC---------ChHHHHHhh-h------h-h----h--H-----hhHH
Q 036633          324 ILKTDFNRKATR---G-IAAFDLTNTLIIMTSDL---------KDEQVYEVM-L------T-A----T--Y-----GRVN  371 (550)
Q Consensus       324 ~ld~g~~~~l~d---~-g~~vd~~~~iiI~TsN~---------g~~~~~~~~-~------~-~----~--~-----~~~~  371 (550)
                      +|+ |  + +++   . |+.++|+++++|+|||+         |.+.+.... .      . .    .  .     ....
T Consensus       218 iLe-G--~-~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~  293 (413)
T TIGR00382       218 IIE-G--T-VANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEP  293 (413)
T ss_pred             Hhh-c--c-ceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHH
Confidence            995 8  6 665   5 89999999999999999         555443211 0      0 0    0  0     1112


Q ss_pred             HHh-ccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH----HHHhccCCCccccCCHHHHHHHHhcCc-ccCC
Q 036633          372 EVT-GSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET----KRRNNDSKAVIVCPSTSALVHIASNAA-RKYG  445 (550)
Q Consensus       372 ~~l-~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~----~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~G  445 (550)
                      +.+ +..|.|||++|+|.+++|.   ||+.+++.+|+...++.+    .+.+..+|+ .+.++++++++|++.+| +.+|
T Consensus       294 ~dl~~~g~~PEflgRld~Iv~f~---pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi-~L~~t~~a~~~Ia~~~~~~~~G  369 (413)
T TIGR00382       294 EDLVKFGLIPEFIGRLPVIATLE---KLDEEALIAILTKPKNALVKQYQALFKMDNV-ELDFEEEALKAIAKKALERKTG  369 (413)
T ss_pred             HHHHHHhhHHHHhCCCCeEeecC---CCCHHHHHHHHHHHHHHHHHHHHHHhccCCe-EEEECHHHHHHHHHhCCCCCCC
Confidence            233 4459999999999999999   999999999999865444    445556799 99999999999999999 9999


Q ss_pred             CcccHHHHHHcc
Q 036633          446 QNGEGLKRWMDQ  457 (550)
Q Consensus       446 aN~R~L~~~i~~  457 (550)
                      |  |+|+++|++
T Consensus       370 A--R~Lr~iie~  379 (413)
T TIGR00382       370 A--RGLRSIVEG  379 (413)
T ss_pred             c--hHHHHHHHH
Confidence            9  999999998

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.1e-29  Score=272.86  Aligned_cols=323  Identities=16%  Similarity=0.215  Sum_probs=245.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHhHHHhhhhc-c-------------HHHHHHHHHHHHhhhhcCCCcc
Q 036633          106 LRQIDNELKDAFFELVSFVK-L-RMQVEYDDFVSCVHDAKRVK-D-------------YSKILDQIDARVHGKFKEKLAV  169 (550)
Q Consensus       106 ~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~~v  169 (550)
                      +.+++++|..+..+..+.-+ . .|+++++.++.+++...... +             .+.+.+.+++++++++...+..
T Consensus       207 ~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evk~k~~~El~kL~~m~~~S  286 (782)
T COG0466         207 LLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMS  286 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCC
Confidence            34455555444433333333 3 66777777777766443111 1             1223347788899998876666


Q ss_pred             CHHHHHHHHHHH-hCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCC
Q 036633          170 DVEEIAEVASKL-TGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNC  248 (550)
Q Consensus       170 ~~~~i~~v~~~~-~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~G  248 (550)
                      .+..|.+.+-.| +.+||.+-.. +...+...+..|++..+|-+.++++|.+++...   .  +...-+...+||+||||
T Consensus       287 aE~~ViRnYlDwll~lPW~~~sk-~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~---~--l~~~~kGpILcLVGPPG  360 (782)
T COG0466         287 AEATVIRNYLDWLLDLPWGKRSK-DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQ---K--LTKKLKGPILCLVGPPG  360 (782)
T ss_pred             chHHHHHHHHHHHHhCCCccccc-hhhhHHHHHHHhcccccCchhHHHHHHHHHHHH---H--HhccCCCcEEEEECCCC
Confidence            666665555555 9999998555 467799999999999999999999999999765   1  11111226999999999


Q ss_pred             CcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh--------hhHHhHHHHHHHhC--CCCeEEeccccccCHH--
Q 036633          249 SGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI--------KHFFDSLAALVKKR--PYSVVLFDKIEKANSS--  316 (550)
Q Consensus       249 vGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~--------s~liG~lt~al~~~--p~~VlllDEIeka~~~--  316 (550)
                      ||||+++++||+.+.+      .|+|+.++...+...+        ..+-|.+.+++++.  .+.|++||||||++.+  
T Consensus       361 VGKTSLgkSIA~al~R------kfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~r  434 (782)
T COG0466         361 VGKTSLGKSIAKALGR------KFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFR  434 (782)
T ss_pred             CCchhHHHHHHHHhCC------CEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCC
Confidence            9999999999999998      9999999999865432        23333666666652  2359999999999864  


Q ss_pred             --HHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEe
Q 036633          317 --ILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVI  392 (550)
Q Consensus       317 --v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f  392 (550)
                        -..+||.+||..||..|.|+  ...+|+++++||+|+|.-                     ..++++|++|+ ++|.+
T Consensus       435 GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl---------------------~tIP~PLlDRM-EiI~l  492 (782)
T COG0466         435 GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSL---------------------DTIPAPLLDRM-EVIRL  492 (782)
T ss_pred             CChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCcc---------------------ccCChHHhcce-eeeee
Confidence              56899999999988889999  899999999999999963                     46889999999 89999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc--cccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc--hhhHHHHHhh
Q 036633          393 DLAVPLLDTTRLLLREWACEETKRRNNDSKAV--IVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ--RPSADHVIDK  467 (550)
Q Consensus       393 ~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~--~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~--~~la~~~l~~  467 (550)
                      .   .++.++...|+.++|  +.+.+.++|+-  .+.++++++..|.++ | .+.|.  |.|+|.|..  +..+..++.+
T Consensus       493 s---gYt~~EKl~IAk~~L--iPk~~~~~gL~~~el~i~d~ai~~iI~~-YTREAGV--R~LeR~i~ki~RK~~~~i~~~  564 (782)
T COG0466         493 S---GYTEDEKLEIAKRHL--IPKQLKEHGLKKGELTITDEAIKDIIRY-YTREAGV--RNLEREIAKICRKAAKKILLK  564 (782)
T ss_pred             c---CCChHHHHHHHHHhc--chHHHHHcCCCccceeecHHHHHHHHHH-HhHhhhh--hHHHHHHHHHHHHHHHHHHhc
Confidence            9   999999999999999  45555555542  589999999999984 5 78898  999999998  7777777775


Q ss_pred             hhc
Q 036633          468 FLR  470 (550)
Q Consensus       468 ~~~  470 (550)
                      +.+
T Consensus       565 ~~k  567 (782)
T COG0466         565 KEK  567 (782)
T ss_pred             Ccc
Confidence            543

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.97  E-value=2.4e-31  Score=281.18  Aligned_cols=246  Identities=21%  Similarity=0.203  Sum_probs=188.3

Q ss_pred             HHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC-------cCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCC
Q 036633          196 RYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-------RRQL-GLFLFAGPNCSGKAELAKAIANELYDNND  267 (550)
Q Consensus       196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~-------~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~  267 (550)
                      ....+...|++.|+||++|++.++.++..+   +.++..       ...+ .++||+||||||||++|++||+.+..   
T Consensus        61 ~p~~i~~~L~~~ViGq~~ak~~l~~av~~~---~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~---  134 (412)
T PRK05342         61 TPKEIKAHLDQYVIGQERAKKVLSVAVYNH---YKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV---  134 (412)
T ss_pred             CHHHHHHHHhhHeeChHHHHHHHHHHHHHH---HHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC---
Confidence            456888899999999999999998888544   333321       1234 79999999999999999999999877   


Q ss_pred             CCCceeEEecCCCCchhhhhhHHh-HHHHH-------HHhCCCCeEEeccccccCH--------------HHHHHHHHhh
Q 036633          268 NDNHLIHFDMGNYTELESIKHFFD-SLAAL-------VKKRPYSVVLFDKIEKANS--------------SILNLLLKIL  325 (550)
Q Consensus       268 ~~~~li~id~s~~~~~~~~s~liG-~lt~a-------l~~~p~~VlllDEIeka~~--------------~v~~~Ll~~l  325 (550)
                         +|+++||+.+++...+..-.+ .++..       +...+++||||||||++++              ++|+.||++|
T Consensus       135 ---pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~L  211 (412)
T PRK05342        135 ---PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKIL  211 (412)
T ss_pred             ---CceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHH
Confidence               999999999876543222111 12221       3345779999999999976              4999999999


Q ss_pred             hhccccccccC-CeEeecCCeEEEEeCCC---------ChHHHHHhh-h------h-h--h------HhhHHH-----Hh
Q 036633          326 KTDFNRKATRG-IAAFDLTNTLIIMTSDL---------KDEQVYEVM-L------T-A--T------YGRVNE-----VT  374 (550)
Q Consensus       326 d~g~~~~l~d~-g~~vd~~~~iiI~TsN~---------g~~~~~~~~-~------~-~--~------~~~~~~-----~l  374 (550)
                      |.+... ++++ |+..++.++++|+|||+         |.+.+.... .      . .  .      ...+.+     .+
T Consensus       212 eg~~~~-v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL  290 (412)
T PRK05342        212 EGTVAS-VPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDL  290 (412)
T ss_pred             hcCeEE-eCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHH
Confidence            855334 5777 89999999999999998         444332211 0      0 0  0      012222     22


Q ss_pred             cc-CCChhhhhhccceeEecCCCCCCHHHHHHHHHH----HHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcc
Q 036633          375 GS-LFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW----ACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNG  448 (550)
Q Consensus       375 ~~-~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~----~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~  448 (550)
                      .+ .|.|||++|+|.+++|+   ||+.+++.+|+..    .+.++.+.+..+|+ .+.++++++++|++.+| +.+||  
T Consensus       291 ~~~gf~PEflgRld~iv~f~---~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i-~L~~t~~al~~Ia~~~~~~~~GA--  364 (412)
T PRK05342        291 IKFGLIPEFIGRLPVVATLE---ELDEEALVRILTEPKNALVKQYQKLFEMDGV-ELEFTDEALEAIAKKAIERKTGA--  364 (412)
T ss_pred             HHHhhhHHHhCCCCeeeecC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc-EEEECHHHHHHHHHhCCCCCCCC--
Confidence            33 48999999999999999   9999999999985    55555666677899 99999999999999999 99999  


Q ss_pred             cHHHHHHcc
Q 036633          449 EGLKRWMDQ  457 (550)
Q Consensus       449 R~L~~~i~~  457 (550)
                      |+|+++|++
T Consensus       365 R~Lrriie~  373 (412)
T PRK05342        365 RGLRSILEE  373 (412)
T ss_pred             chHHHHHHH
Confidence            999999998

>TIGR00763 lon ATP-dependent protease La

Probab=99.97  E-value=1.7e-29  Score=288.59  Aligned_cols=276  Identities=19%  Similarity=0.255  Sum_probs=208.5

Q ss_pred             HHHHHHHHhhhhcCCCccCH-HHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhc
Q 036633          152 LDQIDARVHGKFKEKLAVDV-EEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKK  230 (550)
Q Consensus       152 ~~~~~~~~~~~~~~~~~v~~-~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~  230 (550)
                      .+.+.+++.++....+...+ ..+...+..++++||.+...+ ...+..++..|.+.++||+.+++.|...+...   ..
T Consensus       266 ~~~~~~e~~~~~~~~~~~~~~~~~~~yl~~~~~ip~~~~~~~-~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~---~~  341 (775)
T TIGR00763       266 KKVIEKELTKLSLLEPSSSEFTVTRNYLDWLTDLPWGKYSKE-NLDLKRAKEILDEDHYGLKKVKERILEYLAVQ---KL  341 (775)
T ss_pred             HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHCCCCcccccc-hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHH---Hh
Confidence            34677788877765443444 445568888899999987666 77799999999999999999999999877644   21


Q ss_pred             CCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh----hhHHh----HHHHHHHh--C
Q 036633          231 GLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI----KHFFD----SLAALVKK--R  300 (550)
Q Consensus       231 gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~----s~liG----~lt~al~~--~  300 (550)
                      .  ...++.++||+||||||||++|++||+.+..      ++++++++.+.+....    ...+|    .+.+++..  .
T Consensus       342 ~--~~~~~~~lll~GppG~GKT~lAk~iA~~l~~------~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~  413 (775)
T TIGR00763       342 R--GKMKGPILCLVGPPGVGKTSLGKSIAKALNR------KFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKT  413 (775)
T ss_pred             h--cCCCCceEEEECCCCCCHHHHHHHHHHHhcC------CeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCc
Confidence            1  1112258999999999999999999999987      9999998876543211    12222    33344332  2


Q ss_pred             CCCeEEeccccccCHH----HHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHh
Q 036633          301 PYSVVLFDKIEKANSS----ILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT  374 (550)
Q Consensus       301 p~~VlllDEIeka~~~----v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l  374 (550)
                      ..+||||||||+++++    ..+.|+++||+.++..+.|.  +..+|+++++||+|||..                    
T Consensus       414 ~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~--------------------  473 (775)
T TIGR00763       414 KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSI--------------------  473 (775)
T ss_pred             CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCc--------------------
Confidence            3359999999999774    45899999996433338887  889999999999999973                    


Q ss_pred             ccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc--cccCCHHHHHHHHhcCc-ccCCCcccHH
Q 036633          375 GSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV--IVCPSTSALVHIASNAA-RKYGQNGEGL  451 (550)
Q Consensus       375 ~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~--~l~~~~~a~~~L~~~~~-~~~GaN~R~L  451 (550)
                       ..++|+|++|| .+|.|.   +|+.++...|+..++..  +.+...|+-  .+.++++++.+|+. +| .++|+  |+|
T Consensus       474 -~~i~~~L~~R~-~vi~~~---~~~~~e~~~I~~~~l~~--~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~--R~l  543 (775)
T TIGR00763       474 -DTIPRPLLDRM-EVIELS---GYTEEEKLEIAKKYLIP--KALEDHGLKPDELKITDEALLLLIK-YYTREAGV--RNL  543 (775)
T ss_pred             -hhCCHHHhCCe-eEEecC---CCCHHHHHHHHHHHHHH--HHHHHcCCCcceEEECHHHHHHHHH-hcChhcCC--hHH
Confidence             46899999999 689999   99999999999988853  333333331  46899999999998 67 88899  999


Q ss_pred             HHHHcc--hhhHHHHHh-hhh
Q 036633          452 KRWMDQ--RPSADHVID-KFL  469 (550)
Q Consensus       452 ~~~i~~--~~la~~~l~-~~~  469 (550)
                      +|.|+.  ...+..++. +..
T Consensus       544 ~r~i~~~~~~~~~~~~~~~~~  564 (775)
T TIGR00763       544 ERQIEKICRKAAVKLVEQGEK  564 (775)
T ss_pred             HHHHHHHHHHHHHHHHhccCc
Confidence            999998  555666654 443

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.97  E-value=4.3e-29  Score=283.04  Aligned_cols=287  Identities=17%  Similarity=0.231  Sum_probs=221.9

Q ss_pred             HHHHHHHHHHhhhhcCCCccCHHHHHHHHHHH-hCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhh
Q 036633          150 KILDQIDARVHGKFKEKLAVDVEEIAEVASKL-TGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAA  228 (550)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~v~~~~i~~v~~~~-~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~  228 (550)
                      ++.+.+++++.+++...+...+..|...+-.| +.+||++.+.+ ...+...++.|.+.++|++.++++|.+.+...   
T Consensus       266 ~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~-~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~---  341 (784)
T PRK10787        266 EAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKV-KKDLRQAQEILDTDHYGLERVKDRILEYLAVQ---  341 (784)
T ss_pred             HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCcc-cccHHHHHHHhhhhccCHHHHHHHHHHHHHHH---
Confidence            33447788888888766666666666655555 99999997665 46789999999999999999999999888743   


Q ss_pred             hcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh----hhHH----hHHHHHHHhC
Q 036633          229 KKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI----KHFF----DSLAALVKKR  300 (550)
Q Consensus       229 ~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~----s~li----G~lt~al~~~  300 (550)
                      . ..... +...++|+||||||||++|+.+|+.+..      ++++++++...+...+    ..++    |.+..++...
T Consensus       342 ~-~~~~~-~g~~i~l~GppG~GKTtl~~~ia~~l~~------~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~  413 (784)
T PRK10787        342 S-RVNKI-KGPILCLVGPPGVGKTSLGQSIAKATGR------KYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV  413 (784)
T ss_pred             H-hcccC-CCceEEEECCCCCCHHHHHHHHHHHhCC------CEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc
Confidence            1 11111 2257999999999999999999999877      8999999987654332    1122    2444555442


Q ss_pred             --CCCeEEeccccccCHHH----HHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHH
Q 036633          301 --PYSVVLFDKIEKANSSI----LNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNE  372 (550)
Q Consensus       301 --p~~VlllDEIeka~~~v----~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~  372 (550)
                        ...|+||||||+++++.    ++.|++++|++++..++|.  ...+|+++++||+|+|.                   
T Consensus       414 ~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~-------------------  474 (784)
T PRK10787        414 GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS-------------------  474 (784)
T ss_pred             CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCC-------------------
Confidence              34699999999999876    5999999998866558887  67899999999999995                   


Q ss_pred             HhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHH-HHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccH
Q 036633          373 VTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACE-ETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEG  450 (550)
Q Consensus       373 ~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~-~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~  450 (550)
                         -.++|+|++|| .+|.|.   +|+.+++.+|+.++|. +..++....+. .+.++++++++|++ +| +.+|+  |+
T Consensus       475 ---~~i~~aLl~R~-~ii~~~---~~t~eek~~Ia~~~L~~k~~~~~~l~~~-~l~i~~~ai~~ii~-~yt~e~Ga--R~  543 (784)
T PRK10787        475 ---MNIPAPLLDRM-EVIRLS---GYTEDEKLNIAKRHLLPKQIERNALKKG-ELTVDDSAIIGIIR-YYTREAGV--RS  543 (784)
T ss_pred             ---CCCCHHHhcce-eeeecC---CCCHHHHHHHHHHhhhHHHHHHhCCCCC-eEEECHHHHHHHHH-hCCcccCC--cH
Confidence               24899999999 699999   9999999999999995 34444433455 78999999999998 78 99999  99


Q ss_pred             HHHHHcc---hhhHHHHHhhhhcCCCccccccch
Q 036633          451 LKRWMDQ---RPSADHVIDKFLRDAGYNHQSKEE  481 (550)
Q Consensus       451 L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~~  481 (550)
                      |+|.|++   .++++.++.+..   ..+.++.+.
T Consensus       544 LeR~I~~i~r~~l~~~~~~~~~---~~v~v~~~~  574 (784)
T PRK10787        544 LEREISKLCRKAVKQLLLDKSL---KHIEINGDN  574 (784)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCC---ceeeecHHH
Confidence            9999998   566665555432   234455443

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=99.97  E-value=2.8e-29  Score=260.49  Aligned_cols=291  Identities=17%  Similarity=0.175  Sum_probs=224.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..+||++.|+..+...+...         .....++|+.|+|||||..+|++|++...+   .++||+.+||+.+++...
T Consensus       223 ~~iIG~S~am~~ll~~i~~V---------A~Sd~tVLi~GETGtGKElvAraIH~~S~R---~~kPfV~~NCAAlPesLl  290 (550)
T COG3604         223 GGIIGRSPAMRQLLKEIEVV---------AKSDSTVLIRGETGTGKELVARAIHQLSPR---RDKPFVKLNCAALPESLL  290 (550)
T ss_pred             ccceecCHHHHHHHHHHHHH---------hcCCCeEEEecCCCccHHHHHHHHHhhCcc---cCCCceeeeccccchHHH
Confidence            37999999999999999877         112279999999999999999999999999   999999999999999999


Q ss_pred             hhhHHh----HHHHHHHhCC-------CCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633          286 IKHFFD----SLAALVKKRP-------YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG----~lt~al~~~p-------~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~  353 (550)
                      .|.|||    .||+|++.++       ++.+|||||..++...|..||++|++|++.++... ..+||.+   ||++||.
T Consensus       291 ESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVR---iIAATNR  367 (550)
T COG3604         291 ESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVR---VIAATNR  367 (550)
T ss_pred             HHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEE---EEeccch
Confidence            999999    9999998866       47999999999999999999999999955544444 5667776   9999998


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      +......              .+.|+.+|++|+ .++|.. .|||.+  +|+..++..++.+++.++...   .+.++++
T Consensus       368 DL~~~V~--------------~G~FRaDLYyRL-sV~Pl~-lPPLRER~~DIplLA~~Fle~~~~~~gr~---~l~ls~~  428 (550)
T COG3604         368 DLEEMVR--------------DGEFRADLYYRL-SVFPLE-LPPLRERPEDIPLLAGYFLEKFRRRLGRA---ILSLSAE  428 (550)
T ss_pred             hHHHHHH--------------cCcchhhhhhcc-cccccC-CCCcccCCccHHHHHHHHHHHHHHhcCCc---ccccCHH
Confidence            8766655              578999999999 588887 458865  999999999999999887655   5689999


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcc-hhhHHHHHhhhhcCCCccccccchhhccccccccCCC-CCCCccccccccc--
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQ-RPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGG-GGGGVEYWWEEST--  507 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~-~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~d-k~g~~~y~~~~~~--  507 (550)
                      |++.|.++.||  | |+|+|+++|++ ..++    .+....+. . .+................ ..+.  +.-..|.  
T Consensus       429 Al~~L~~y~wP--G-NVRELen~veRavlla----~~~~~~~d-~-~~l~~~~~~~~~~~~~~~~p~~~--~~~~~p~~~  497 (550)
T COG3604         429 ALELLSSYEWP--G-NVRELENVVERAVLLA----GRLTRRGD-L-CTLELSLSALLWKTLPAPEPSAL--PEPALPGEH  497 (550)
T ss_pred             HHHHHHcCCCC--C-cHHHHHHHHHHHHHHh----cccCCCcc-e-eehhhhhhccccccCCCCCcccc--CCccCCCcc
Confidence            99999998887  8 99999999998 2222    11222222 1 112111110001111110 0001  1112222  


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036633          508 ---EGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRA  541 (550)
Q Consensus       508 ---~~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~  541 (550)
                         ...+..|.+.+..+|++-..|....|+.|.+.+.
T Consensus       498 ~l~~~~~~~eR~~I~~aL~~~~~~~a~AAr~LGl~~~  534 (550)
T COG3604         498 TLREATEEFERQLIIAALEETNGNWAGAARRLGLTRR  534 (550)
T ss_pred             cchhhhHHHHHHHHHHHHHHhCCcHHHHHHHhCCCHH
Confidence               3455668888999999999999999999887654

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1e-27  Score=256.10  Aligned_cols=300  Identities=21%  Similarity=0.261  Sum_probs=238.3

Q ss_pred             HHHHHHHHHHHhHHHhhhhcc---------------HHHHHHHHHHHHhhhhcCCCccCHHHHHHHHHHH-hCCCCCCCC
Q 036633          127 RMQVEYDDFVSCVHDAKRVKD---------------YSKILDQIDARVHGKFKEKLAVDVEEIAEVASKL-TGIPASWFC  190 (550)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~v~~~~i~~v~~~~-~gip~~~~~  190 (550)
                      -|.+++..++.++.....+.|               .+.+.+.+++++.+++...+..++-.|...+-.| |.+||++.+
T Consensus       317 lL~eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwlt~LPWgk~S  396 (906)
T KOG2004|consen  317 LLREQLKAIKKELGIEKDDKDALVEKFRERIKSLKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWLTSLPWGKSS  396 (906)
T ss_pred             HHHHHHHHHHHhhCCCccchhhHHHHHHHHhhhccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHHHhCCCCCCC
Confidence            456666666666654333322               1122336788888888878888888999888777 899999976


Q ss_pred             CchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCC
Q 036633          191 TKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDN  270 (550)
Q Consensus       191 ~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~  270 (550)
                      .+ .-.+...+..|.+..+|-++++++|.+.+...   +  +...-+..++||+||||||||++|++||+.|.+      
T Consensus       397 ~E-n~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~---k--Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR------  464 (906)
T KOG2004|consen  397 TE-NLDLARAKEILDEDHYGMEDVKERILEFIAVG---K--LRGSVQGKILCFVGPPGVGKTSIAKSIARALNR------  464 (906)
T ss_pred             hh-hhhHHHHHHhhcccccchHHHHHHHHHHHHHH---h--hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC------
Confidence            65 56688999999999999999999999999876   3  333334479999999999999999999999998      


Q ss_pred             ceeEEecCCCCchhhh--------hhHHhHHHHHHHhCC--CCeEEeccccccCH----HHHHHHHHhhhhccccccccC
Q 036633          271 HLIHFDMGNYTELESI--------KHFFDSLAALVKKRP--YSVVLFDKIEKANS----SILNLLLKILKTDFNRKATRG  336 (550)
Q Consensus       271 ~li~id~s~~~~~~~~--------s~liG~lt~al~~~p--~~VlllDEIeka~~----~v~~~Ll~~ld~g~~~~l~d~  336 (550)
                      .|+||..+.+++...+        ..+-|.+.+++++..  +.+++||||||...    +-..+||.+||..||..+.|.
T Consensus       465 kFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDH  544 (906)
T KOG2004|consen  465 KFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDH  544 (906)
T ss_pred             ceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhh
Confidence            9999999999865432        223338888888632  45999999999864    456899999999988889999


Q ss_pred             --CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH
Q 036633          337 --IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET  414 (550)
Q Consensus       337 --g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~  414 (550)
                        ...+|++.++||||+|.-                     ..++|+|+.|+ ++|...   .|..++...|+..+|-. 
T Consensus       545 YLdVp~DLSkVLFicTAN~i---------------------dtIP~pLlDRM-EvIels---GYv~eEKv~IA~~yLip-  598 (906)
T KOG2004|consen  545 YLDVPVDLSKVLFICTANVI---------------------DTIPPPLLDRM-EVIELS---GYVAEEKVKIAERYLIP-  598 (906)
T ss_pred             ccccccchhheEEEEecccc---------------------ccCChhhhhhh-heeecc---CccHHHHHHHHHHhhhh-
Confidence              899999999999999973                     57899999999 899999   99999999999999943 


Q ss_pred             HHHhccCCCc--cccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc--hhhHHHHHhhh
Q 036633          415 KRRNNDSKAV--IVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ--RPSADHVIDKF  468 (550)
Q Consensus       415 ~~~l~~~~~~--~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~--~~la~~~l~~~  468 (550)
                       +.+...|+-  .+.++++++..|.++ | .+.|.  |.|++-|+.  +..|-.+..+.
T Consensus       599 -~a~~~~gl~~e~v~is~~al~~lI~~-YcrEaGV--RnLqk~iekI~Rk~Al~vv~~~  653 (906)
T KOG2004|consen  599 -QALKDCGLKPEQVKISDDALLALIER-YCREAGV--RNLQKQIEKICRKVALKVVEGE  653 (906)
T ss_pred             -HHHHHcCCCHHhcCccHHHHHHHHHH-HHHHHhH--HHHHHHHHHHHHHHHHHHHHhh
Confidence             333344441  478999998888873 5 77798  999999998  66666666544

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.96  E-value=1e-29  Score=238.75  Aligned_cols=147  Identities=31%  Similarity=0.491  Sum_probs=126.1

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhc-cCCCCCCceeEEecCCCCc----hhhhhhHHhHHHHHHHhCCCCeEEeccc
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELY-DNNDNDNHLIHFDMGNYTE----LESIKHFFDSLAALVKKRPYSVVLFDKI  310 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~-~~~~~~~~li~id~s~~~~----~~~~s~liG~lt~al~~~p~~VlllDEI  310 (550)
                      || ++++|+||||||||++|++||+.++ +   ...+++++||++|++    .+.+++++|.....+...+++|||||||
T Consensus         1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~---~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi   77 (171)
T PF07724_consen    1 RPKSNFLLAGPSGVGKTELAKALAELLFVG---SERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI   77 (171)
T ss_dssp             S-SEEEEEESSTTSSHHHHHHHHHHHHT-S---SCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHhccC---CccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence            57 9999999999999999999999999 8   888999999999999    7778888884444444555679999999


Q ss_pred             cccCH-----------HHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhh------hhhHhhHHH
Q 036633          311 EKANS-----------SILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVML------TATYGRVNE  372 (550)
Q Consensus       311 eka~~-----------~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~------~~~~~~~~~  372 (550)
                      ||+|+           .||+.||++||+|  + ++|+ |+.+||+|++||||||.+...+.....      ........+
T Consensus        78 dKa~~~~~~~~~v~~~~V~~~LL~~le~g--~-~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (171)
T PF07724_consen   78 DKAHPSNSGGADVSGEGVQNSLLQLLEGG--T-LTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQIRD  154 (171)
T ss_dssp             GGCSHTTTTCSHHHHHHHHHHHHHHHHHS--E-EEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCHHHHCHHHHH
T ss_pred             hhccccccccchhhHHHHHHHHHHHhccc--c-eecccceEEEeCCceEEEecccccchhhhhhccccccHHHHHHHHHH
Confidence            99999           9999999999999  8 9999 999999999999999999988876432      123456777


Q ss_pred             HhccCCChhhhhhccce
Q 036633          373 VTGSLFKPSLLKLLDKL  389 (550)
Q Consensus       373 ~l~~~f~p~ll~Rid~i  389 (550)
                      .++..|+|||++|||.|
T Consensus       155 ~~~~~f~pEf~~Ri~~i  171 (171)
T PF07724_consen  155 LVEYGFRPEFLGRIDVI  171 (171)
T ss_dssp             HHHHTS-HHHHTTSSEE
T ss_pred             HHHcCCCHHHHccCCcC
Confidence            88899999999999753

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=99.96  E-value=3.8e-28  Score=255.46  Aligned_cols=288  Identities=18%  Similarity=0.214  Sum_probs=220.5

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      +.++|.+.++..+...+++.         ...+.++|+.|+|||||..+|++|++.+.+   .+.||+.+||+.+++..-
T Consensus       245 ~~Iig~S~~m~~~~~~akr~---------A~tdstVLi~GESGTGKElfA~~IH~~S~R---~~~PFIaiNCaAiPe~Ll  312 (560)
T COG3829         245 DDIIGESPAMLRVLELAKRI---------AKTDSTVLILGESGTGKELFARAIHNLSPR---ANGPFIAINCAAIPETLL  312 (560)
T ss_pred             hhhccCCHHHHHHHHHHHhh---------cCCCCcEEEecCCCccHHHHHHHHHhcCcc---cCCCeEEEecccCCHHHH
Confidence            47999999999998888876         223489999999999999999999999999   899999999999999999


Q ss_pred             hhhHHh----HHHHHHHh-CC-------CCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCC
Q 036633          286 IKHFFD----SLAALVKK-RP-------YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSD  352 (550)
Q Consensus       286 ~s~liG----~lt~al~~-~p-------~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN  352 (550)
                      .|.|||    +||+|.+. +|       ++.||||||..++...|..||++|+++++.++... ...+|++   ||++||
T Consensus       313 ESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVR---IIAATN  389 (560)
T COG3829         313 ESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVR---IIAATN  389 (560)
T ss_pred             HHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEE---EEeccC
Confidence            999999    99999885 33       48999999999999999999999999955544444 6778777   999999


Q ss_pred             CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCH
Q 036633          353 LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPST  430 (550)
Q Consensus       353 ~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~  430 (550)
                      ...+....              .+.|+.+|++|+ .+++.. .|||.+  +||..++..+|.++++++...   .-.+++
T Consensus       390 ~nL~~~i~--------------~G~FReDLYYRL-NV~~i~-iPPLReR~eDI~~L~~~Fl~k~s~~~~~~---v~~ls~  450 (560)
T COG3829         390 RNLEKMIA--------------EGTFREDLYYRL-NVIPIT-IPPLRERKEDIPLLAEYFLDKFSRRYGRN---VKGLSP  450 (560)
T ss_pred             cCHHHHHh--------------cCcchhhheeee-ceeeec-CCCcccCcchHHHHHHHHHHHHHHHcCCC---cccCCH
Confidence            98877665              579999999999 577777 558865  999999999999999887553   235899


Q ss_pred             HHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccc-cccccCCCCCCCc-ccccccccC
Q 036633          431 SALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDME-ESTELGGGGGGGV-EYWWEESTE  508 (550)
Q Consensus       431 ~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~-~~~~l~~dk~g~~-~y~~~~~~~  508 (550)
                      +++..|..+.||  | |+|+|+++|++ .+-   +.   .+++.  |   ...+++ .....--...... ...-....+
T Consensus       451 ~a~~~L~~y~WP--G-NVRELeNviER-~v~---~~---~~~~~--I---~~~~lp~~~l~~k~~~~~~~~~~~~~~l~~  515 (560)
T COG3829         451 DALALLLRYDWP--G-NVRELENVIER-AVN---LV---ESDGL--I---DADDLPAFALEEKEPRPETTKQIEVGSLKE  515 (560)
T ss_pred             HHHHHHHhCCCC--c-hHHHHHHHHHH-HHh---cc---CCcce--e---ehhhcchhhhcccccCcCcccCcccccHHH
Confidence            999999999997  8 99999999998 111   11   11111  2   222222 1110000000000 000011122


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633          509 GLSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC  542 (550)
Q Consensus       509 ~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~  542 (550)
                      .+...|...+..+|+.-.+|....|..|.+.+.+
T Consensus       516 ~~e~~Ek~~I~~aL~~~~gn~~~aAk~LgIsrtt  549 (560)
T COG3829         516 ALEEYEKHLIREALERHGGNKSKAAKELGISRTT  549 (560)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHH
Confidence            3334577788899999999999999999887653

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.96  E-value=4e-28  Score=255.91  Aligned_cols=292  Identities=17%  Similarity=0.149  Sum_probs=217.8

Q ss_pred             hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633          203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE  282 (550)
Q Consensus       203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~  282 (550)
                      .....++|++.++.++.+.+.+.         .....++|+.|+|||||..+|++|++...+   ...||+.+||+.+++
T Consensus       138 ~~~~~liG~S~am~~l~~~i~kv---------A~s~a~VLI~GESGtGKElvAr~IH~~S~R---~~~PFVavNcaAip~  205 (464)
T COG2204         138 SLGGELVGESPAMQQLRRLIAKV---------APSDASVLITGESGTGKELVARAIHQASPR---AKGPFIAVNCAAIPE  205 (464)
T ss_pred             cccCCceecCHHHHHHHHHHHHH---------hCCCCCEEEECCCCCcHHHHHHHHHhhCcc---cCCCceeeecccCCH
Confidence            35678999999999999999887         112279999999999999999999999988   889999999999999


Q ss_pred             hhhhhhHHh----HHHHHHHhC-------CCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEe
Q 036633          283 LESIKHFFD----SLAALVKKR-------PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMT  350 (550)
Q Consensus       283 ~~~~s~liG----~lt~al~~~-------p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~T  350 (550)
                      ..-.|.|||    .||++..++       .++++|||||+.++.++|..||+++++|+++++..+ ..++|.+   ||++
T Consensus       206 ~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR---iIaa  282 (464)
T COG2204         206 NLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVR---IIAA  282 (464)
T ss_pred             HHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeE---EEee
Confidence            999999999    888887664       358999999999999999999999999943322222 3445555   9999


Q ss_pred             CCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccC
Q 036633          351 SDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCP  428 (550)
Q Consensus       351 sN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~  428 (550)
                      ||.+......              .+.|+++|++|+ .++++. .|||.+  +||..++.+++.++..++...   ...+
T Consensus       283 T~~dL~~~v~--------------~G~FReDLyyRL-nV~~i~-iPpLRER~EDIp~L~~hfl~~~~~~~~~~---~~~~  343 (464)
T COG2204         283 TNRDLEEEVA--------------AGRFREDLYYRL-NVVPLR-LPPLRERKEDIPLLAEHFLKRFAAELGRP---PKGF  343 (464)
T ss_pred             cCcCHHHHHH--------------cCCcHHHHHhhh-ccceec-CCcccccchhHHHHHHHHHHHHHHHcCCC---CCCC
Confidence            9998766655              579999999999 688888 558876  999999999999999887544   4588


Q ss_pred             CHHHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhc--cccccccCCCCCCCcccccccc
Q 036633          429 STSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETED--MEESTELGGGGGGGVEYWWEES  506 (550)
Q Consensus       429 ~~~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~--~~~~~~l~~dk~g~~~y~~~~~  506 (550)
                      +++++..|..|.||  | |+|+|++++++   +-.+..+     ..+.........  ......  ....+...-.....
T Consensus       344 s~~a~~~L~~y~WP--G-NVREL~N~ver---~~il~~~-----~~i~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~l  410 (464)
T COG2204         344 SPEALAALLAYDWP--G-NVRELENVVER---AVILSEG-----PEIEVEDLPLEILAPAAEAL--AGPAGEAALPGLPL  410 (464)
T ss_pred             CHHHHHHHHhCCCC--h-HHHHHHHHHHH---HHhcCCc-----cccchhhccccccccccccc--cccccccccccccH
Confidence            99999999999887  8 99999999998   1111121     111110000000  000000  00000000000001


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036633          507 TEGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRA  541 (550)
Q Consensus       507 ~~~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~  541 (550)
                      ...+...|.+-+..+|+...+|+...|+.|.+.+.
T Consensus       411 ~~~~~~~Er~~I~~aL~~~~g~~~~aA~~LGi~R~  445 (464)
T COG2204         411 GEALAEVERQLILQALERTGGNKSEAAERLGISRK  445 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHH
Confidence            12334456777888999999999999999988764

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.91  E-value=1.4e-23  Score=217.38  Aligned_cols=214  Identities=15%  Similarity=0.164  Sum_probs=170.0

Q ss_pred             ccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhh
Q 036633          208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK  287 (550)
Q Consensus       208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s  287 (550)
                      ++|++.++..+...+.+.   .      ....++||.|++||||+.+|++|+....+   ...||+.+||+.+.+....+
T Consensus         1 liG~S~~m~~~~~~~~~~---a------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r---~~~pfv~vnc~~~~~~~l~~   68 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSRL---A------PLDRPVLIIGERGTGKELIAARLHYLSKR---WQGPLVKLNCAALSENLLDS   68 (329)
T ss_pred             CCcCCHHHHHHHHHHHHH---h------CCCCCEEEECCCCChHHHHHHHHHHhcCc---cCCCeEEEeCCCCChHHHHH
Confidence            589999999999999877   1      12378999999999999999999999887   77899999999998776677


Q ss_pred             hHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCCh
Q 036633          288 HFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKD  355 (550)
Q Consensus       288 ~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~  355 (550)
                      .+||    .++++       +....+++||||||+.+++++|..|++++++|  . +... +...--.++.||+|||...
T Consensus        69 ~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~--~-~~~~g~~~~~~~~~RiI~at~~~l  145 (329)
T TIGR02974        69 ELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYG--E-FERVGGSQTLQVDVRLVCATNADL  145 (329)
T ss_pred             HHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcC--c-EEecCCCceeccceEEEEechhhH
Confidence            8888    34443       33445689999999999999999999999999  5 4332 3333334567999998765


Q ss_pred             HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633          356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL  433 (550)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~  433 (550)
                      .....              .+.|+++|++|++ .+.+. .|||.  .+|+..++..++.++..++...-  ...++++++
T Consensus       146 ~~~~~--------------~g~fr~dL~~rl~-~~~i~-lPpLReR~eDI~~L~~~fl~~~~~~~~~~~--~~~ls~~a~  207 (329)
T TIGR02974       146 PALAA--------------EGRFRADLLDRLA-FDVIT-LPPLRERQEDIMLLAEHFAIRMARELGLPL--FPGFTPQAR  207 (329)
T ss_pred             HHHhh--------------cCchHHHHHHHhc-chhcC-CCchhhhhhhHHHHHHHHHHHHHHHhCCCC--CCCcCHHHH
Confidence            44433              4789999999994 33444 23898  49999999999998776643221  147899999


Q ss_pred             HHHHhcCcccCCCcccHHHHHHcc
Q 036633          434 VHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       434 ~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +.|..+.||  | |+|.|+++|++
T Consensus       208 ~~L~~y~WP--G-NvrEL~n~i~~  228 (329)
T TIGR02974       208 EQLLEYHWP--G-NVRELKNVVER  228 (329)
T ss_pred             HHHHhCCCC--c-hHHHHHHHHHH
Confidence            999999987  8 99999999997

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.90  E-value=3.2e-23  Score=228.72  Aligned_cols=215  Identities=18%  Similarity=0.201  Sum_probs=171.4

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ...++|++.++..+.+.+.+.   .      ....+++|+||+|||||++|++|+....+   ...||+.+||+.+++..
T Consensus       195 ~~~liG~s~~~~~~~~~~~~~---a------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r---~~~pfv~i~c~~~~~~~  262 (534)
T TIGR01817       195 EDGIIGKSPAMRQVVDQARVV---A------RSNSTVLLRGESGTGKELIAKAIHYLSPR---AKRPFVKVNCAALSETL  262 (534)
T ss_pred             cCceEECCHHHHHHHHHHHHH---h------CcCCCEEEECCCCccHHHHHHHHHHhCCC---CCCCeEEeecCCCCHHH
Confidence            357999999999999999876   1      12368999999999999999999999887   78899999999998877


Q ss_pred             hhhhHHh----HHHHHH-------HhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCC
Q 036633          285 SIKHFFD----SLAALV-------KKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSD  352 (550)
Q Consensus       285 ~~s~liG----~lt~al-------~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN  352 (550)
                      ..+.+||    .++++.       ....+++||||||+.+++++|..|++++++|  . +... +......++.||+|||
T Consensus       263 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~--~-~~~~~~~~~~~~~~riI~~s~  339 (534)
T TIGR01817       263 LESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEG--E-FERVGGNRTLKVDVRLVAATN  339 (534)
T ss_pred             HHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcC--c-EEECCCCceEeecEEEEEeCC
Confidence            7778888    344432       2344689999999999999999999999999  5 4432 2222223455999999


Q ss_pred             CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCccccCCH
Q 036633          353 LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVIVCPST  430 (550)
Q Consensus       353 ~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~  430 (550)
                      ........              .+.|+++|++|++ .+.+. .|||.  .+|+..++..++.++..+.   +. .+.+++
T Consensus       340 ~~l~~~~~--------------~~~f~~~L~~rl~-~~~i~-lPpLreR~eDi~~L~~~~l~~~~~~~---~~-~~~~s~  399 (534)
T TIGR01817       340 RDLEEAVA--------------KGEFRADLYYRIN-VVPIF-LPPLRERREDIPLLAEAFLEKFNREN---GR-PLTITP  399 (534)
T ss_pred             CCHHHHHH--------------cCCCCHHHHHHhc-CCeee-CCCcccccccHHHHHHHHHHHHHHHc---CC-CCCCCH
Confidence            87654332              5789999999995 43433 23887  5999999999998876654   44 458999


Q ss_pred             HHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          431 SALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       431 ~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++++.|..+.||  | |+|.|+++|++
T Consensus       400 ~a~~~L~~~~WP--G-NvrEL~~v~~~  423 (534)
T TIGR01817       400 SAIRVLMSCKWP--G-NVRELENCLER  423 (534)
T ss_pred             HHHHHHHhCCCC--C-hHHHHHHHHHH
Confidence            999999999887  8 99999999997

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=99.90  E-value=6.5e-23  Score=224.70  Aligned_cols=291  Identities=15%  Similarity=0.118  Sum_probs=204.4

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ...++|++.++..+.+.+.+.         ...+.+++++|++||||+.+|++|+....+   .+.+|+.+||+.+.+..
T Consensus       186 ~~~iig~s~~~~~~~~~i~~~---------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r---~~~p~v~v~c~~~~~~~  253 (509)
T PRK05022        186 EGEMIGQSPAMQQLKKEIEVV---------AASDLNVLILGETGVGKELVARAIHAASPR---ADKPLVYLNCAALPESL  253 (509)
T ss_pred             CCceeecCHHHHHHHHHHHHH---------hCCCCcEEEECCCCccHHHHHHHHHHhCCc---CCCCeEEEEcccCChHH
Confidence            356999999999999999977         113379999999999999999999999887   78899999999998776


Q ss_pred             hhhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCC
Q 036633          285 SIKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSD  352 (550)
Q Consensus       285 ~~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN  352 (550)
                      ..+.|||    .++++       +....+++||||||+.+++++|..|++++++|  . +... +....-.++.||+|||
T Consensus       254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~--~-~~~~g~~~~~~~~~RiI~~t~  330 (509)
T PRK05022        254 AESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYG--E-IQRVGSDRSLRVDVRVIAATN  330 (509)
T ss_pred             HHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcC--C-EeeCCCCcceecceEEEEecC
Confidence            6778888    33332       33445689999999999999999999999999  5 4332 2222223455999999


Q ss_pred             CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCH
Q 036633          353 LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPST  430 (550)
Q Consensus       353 ~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~  430 (550)
                      ........              .+.|+++|++|+. ++++. .|||.+  +|+..++..++.++..++...   .+.+++
T Consensus       331 ~~l~~~~~--------------~~~f~~dL~~rl~-~~~i~-lPpLreR~eDI~~L~~~fl~~~~~~~~~~---~~~~s~  391 (509)
T PRK05022        331 RDLREEVR--------------AGRFRADLYHRLS-VFPLS-VPPLRERGDDVLLLAGYFLEQNRARLGLR---SLRLSP  391 (509)
T ss_pred             CCHHHHHH--------------cCCccHHHHhccc-ccEee-CCCchhchhhHHHHHHHHHHHHHHHcCCC---CCCCCH
Confidence            87654433              5789999999994 55555 348876  899999999999887765433   458999


Q ss_pred             HHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccc-cCCCCCCCcccccc--ccc
Q 036633          431 SALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTE-LGGGGGGGVEYWWE--EST  507 (550)
Q Consensus       431 ~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~-l~~dk~g~~~y~~~--~~~  507 (550)
                      ++++.|..+.||  | |+|+|+++|++ .+...  .+... +....|+...   .+.... ........   ..+  .+.
T Consensus       392 ~a~~~L~~y~WP--G-NvrEL~~~i~r-a~~~~--~~~~~-~~~~~i~~~~---l~~~~~~~~~~~~~~---~~~~~~~~  458 (509)
T PRK05022        392 AAQAALLAYDWP--G-NVRELEHVISR-AALLA--RARGA-GRIVTLEAQH---LDLPAEVALPPPEAA---AAPAAVVS  458 (509)
T ss_pred             HHHHHHHhCCCC--C-cHHHHHHHHHH-HHHhc--CCCcc-CccceecHHH---cCcccccccCccccc---cccccccc
Confidence            999999999987  8 99999999997 21111  11100 0011222221   111000 00000000   000  000


Q ss_pred             ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633          508 ----EGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC  542 (550)
Q Consensus       508 ----~~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~  542 (550)
                          ..+...|.+.+..+|++..+|....|+.|.|.+.+
T Consensus       459 ~~l~~~~~~~Er~~I~~aL~~~~gn~~~aA~~LGisr~t  497 (509)
T PRK05022        459 QNLREATEAFQRQLIRQALAQHQGNWAAAARALELDRAN  497 (509)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence                11223467778899999999999999999988753

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.90  E-value=4.9e-23  Score=209.51  Aligned_cols=221  Identities=17%  Similarity=0.213  Sum_probs=159.0

Q ss_pred             CcccCcHHHHH---HHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633          206 KRVFGQNDAID---VIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE  282 (550)
Q Consensus       206 ~~viGQ~~ai~---~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~  282 (550)
                      ..|+||++.+.   -+.+++...           +..+++||||||||||++|+.||.....      +|..++....  
T Consensus        24 de~vGQ~HLlg~~~~lrr~v~~~-----------~l~SmIl~GPPG~GKTTlA~liA~~~~~------~f~~~sAv~~--   84 (436)
T COG2256          24 DEVVGQEHLLGEGKPLRRAVEAG-----------HLHSMILWGPPGTGKTTLARLIAGTTNA------AFEALSAVTS--   84 (436)
T ss_pred             HHhcChHhhhCCCchHHHHHhcC-----------CCceeEEECCCCCCHHHHHHHHHHhhCC------ceEEeccccc--
Confidence            56999999983   333344332           4479999999999999999999998776      8999885433  


Q ss_pred             hhhhhhHHhHHHHHHHh---CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633          283 LESIKHFFDSLAALVKK---RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY  359 (550)
Q Consensus       283 ~~~~s~liG~lt~al~~---~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~  359 (550)
                        .+..+-..+.++-..   ....|||+|||++++...|+.||..+|+|  . +            ++|-+|.-.     
T Consensus        85 --gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G--~-i------------ilIGATTEN-----  142 (436)
T COG2256          85 --GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENG--T-I------------ILIGATTEN-----  142 (436)
T ss_pred             --cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCC--e-E------------EEEeccCCC-----
Confidence              233333333333222   22469999999999999999999999999  6 2            244444322     


Q ss_pred             HhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHH
Q 036633          360 EVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIA  437 (550)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~  437 (550)
                                      +.|  +|+++||+ .++.|.   ||+.+++.+++.+.+....+.+...   .+.++++++++|+
T Consensus       143 ----------------PsF~ln~ALlSR~-~vf~lk---~L~~~di~~~l~ra~~~~~rgl~~~---~~~i~~~a~~~l~  199 (436)
T COG2256         143 ----------------PSFELNPALLSRA-RVFELK---PLSSEDIKKLLKRALLDEERGLGGQ---IIVLDEEALDYLV  199 (436)
T ss_pred             ----------------CCeeecHHHhhhh-heeeee---cCCHHHHHHHHHHHHhhhhcCCCcc---cccCCHHHHHHHH
Confidence                            355  89999999 899999   9999999999999776655544333   4579999999999


Q ss_pred             hcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCccccc
Q 036633          438 SNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWW  503 (550)
Q Consensus       438 ~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~  503 (550)
                      ..+.   | -+|..-+.++-     .....+  . +..+ +.+..+++.+.....+|++|+.||+.
T Consensus       200 ~~s~---G-D~R~aLN~LE~-----~~~~~~--~-~~~~-~~~~l~~~l~~~~~~~Dk~gD~hYdl  252 (436)
T COG2256         200 RLSN---G-DARRALNLLEL-----AALSAE--P-DEVL-ILELLEEILQRRSARFDKDGDAHYDL  252 (436)
T ss_pred             HhcC---c-hHHHHHHHHHH-----HHHhcC--C-Cccc-CHHHHHHHHhhhhhccCCCcchHHHH
Confidence            8643   3 22655555542     111111  1 2233 37788888888899999999999975

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.90  E-value=4e-23  Score=214.85  Aligned_cols=250  Identities=17%  Similarity=0.187  Sum_probs=185.6

Q ss_pred             HHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCC----CcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCce
Q 036633          197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS----SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHL  272 (550)
Q Consensus       197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~----~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~l  272 (550)
                      ...+...|++.|+||++|++.++.+++... .+.++.    .+..|.++||+||||||||++|++||+.+..      +|
T Consensus         6 p~~I~~~Ld~~IiGQe~AkkalavAl~~~~-~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~------~f   78 (443)
T PRK05201          6 PREIVSELDKYIIGQDDAKRAVAIALRNRW-RRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANA------PF   78 (443)
T ss_pred             HHHHHHHhccccCCHHHHHHHHHHHHHHHH-HHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCC------hh
Confidence            356778999999999999999999996520 034333    2234689999999999999999999999877      99


Q ss_pred             eEEecCCCCchhhhh----hHHh--------------------------------H------------------------
Q 036633          273 IHFDMGNYTELESIK----HFFD--------------------------------S------------------------  292 (550)
Q Consensus       273 i~id~s~~~~~~~~s----~liG--------------------------------~------------------------  292 (550)
                      +++||++|.+...+.    .++-                                .                        
T Consensus        79 i~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~  158 (443)
T PRK05201         79 IKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQK  158 (443)
T ss_pred             eeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHH
Confidence            999999887632211    0000                                0                        


Q ss_pred             --------------------------------------------------------------------------------
Q 036633          293 --------------------------------------------------------------------------------  292 (550)
Q Consensus       293 --------------------------------------------------------------------------------  292 (550)
                                                                                                      
T Consensus       159 ~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~  238 (443)
T PRK05201        159 FRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEE  238 (443)
T ss_pred             HHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHH
Confidence                                                                                            


Q ss_pred             -HHHHHHh-CCCCeEEeccccccC------------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHH
Q 036633          293 -LAALVKK-RPYSVVLFDKIEKAN------------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQV  358 (550)
Q Consensus       293 -lt~al~~-~p~~VlllDEIeka~------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~  358 (550)
                       ..+++.. ...+|||||||||..            ..||..||++++..  . +.-.-..||..|.+||++.-+.....
T Consensus       239 v~~~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~--~-v~~k~~~i~T~~ILFI~~GAF~~~kp  315 (443)
T PRK05201        239 IKQEAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGS--T-VSTKYGMVKTDHILFIASGAFHVSKP  315 (443)
T ss_pred             HHHHHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccc--e-eeecceeEECCceeEEecCCcCCCCh
Confidence             0112222 246899999999974            35999999999866  3 32234479999999999765432100


Q ss_pred             HHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH----HHHHHHHHHHhccCCCccccCCHHHHH
Q 036633          359 YEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR----EWACEETKRRNNDSKAVIVCPSTSALV  434 (550)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~----~~~l~~~~~~l~~~~~~~l~~~~~a~~  434 (550)
                                       .-+-|+|.+|++.++.+.   ||+.+++..|+    ...+.++...+...|+ .|.|++++++
T Consensus       316 -----------------~DlIPEl~GR~Pi~v~L~---~L~~~dL~~ILteP~nsLikQy~~Lf~~egv-~L~Ftd~Al~  374 (443)
T PRK05201        316 -----------------SDLIPELQGRFPIRVELD---ALTEEDFVRILTEPKASLIKQYQALLATEGV-TLEFTDDAIR  374 (443)
T ss_pred             -----------------hhccHHHhCccceEEECC---CCCHHHHHHHhcCChhHHHHHHHHHHhhcCc-EEEEcHHHHH
Confidence                             125699999999999999   99999999999    5567777777778899 9999999999


Q ss_pred             HHHhcCc------ccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccc
Q 036633          435 HIASNAA------RKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKE  480 (550)
Q Consensus       435 ~L~~~~~------~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~  480 (550)
                      +|++.++      .+.||  |.|+.++++ .|.+..+...-..+..+.|+..
T Consensus       375 ~IA~~A~~~N~~~~~iGA--R~LrtI~E~-~L~d~~Fe~p~~~~~~v~I~~~  423 (443)
T PRK05201        375 RIAEIAYQVNEKTENIGA--RRLHTVMEK-LLEDISFEAPDMSGETVTIDAA  423 (443)
T ss_pred             HHHHHHHHhcccccccch--hhHHHHHHH-HHHHHhccCCCCCCCEEEECHH
Confidence            9998765      37899  999999996 6776666544333444545444

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=99.90  E-value=1.6e-22  Score=220.18  Aligned_cols=275  Identities=15%  Similarity=0.157  Sum_probs=197.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHH--------hccCCCCCCceeEEec
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANE--------LYDNNDNDNHLIHFDM  277 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~--------l~~~~~~~~~li~id~  277 (550)
                      ..++|++.++..+...+.+.         ...+.++|+.|+|||||+.+|++|+..        ..+   .+.||+.+||
T Consensus       219 ~~iiG~S~~m~~~~~~i~~~---------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r---~~~pfv~inC  286 (538)
T PRK15424        219 GDLLGQSPQMEQVRQTILLY---------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGK---KSHPFVAVNC  286 (538)
T ss_pred             hheeeCCHHHHHHHHHHHHH---------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCcc---CCCCeEEeec
Confidence            34999999999999999876         113379999999999999999999998        555   6789999999


Q ss_pred             CCCCchhhhhhHHh----HHHHHH--------HhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-C---CeEee
Q 036633          278 GNYTELESIKHFFD----SLAALV--------KKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-G---IAAFD  341 (550)
Q Consensus       278 s~~~~~~~~s~liG----~lt~al--------~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~---g~~vd  341 (550)
                      +.+.+....+.|||    .+|++.        ....+++||||||+.+++.+|..|+++++++  . +.. +   ...+|
T Consensus       287 aal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~--~-~~r~G~~~~~~~d  363 (538)
T PRK15424        287 GAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEK--E-VTRVGGHQPVPVD  363 (538)
T ss_pred             ccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcC--e-EEecCCCceeccc
Confidence            99998877888998    555543        2344689999999999999999999999999  5 433 2   23344


Q ss_pred             cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhc
Q 036633          342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNN  419 (550)
Q Consensus       342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~  419 (550)
                         +.||++||........              .+.|+++|++|++ ++.+. .|||.+  +|+..++..+|.+....+ 
T Consensus       364 ---vRiIaat~~~L~~~v~--------------~g~Fr~dL~yrL~-~~~I~-lPPLReR~eDI~~L~~~fl~~~~~~~-  423 (538)
T PRK15424        364 ---VRVISATHCDLEEDVR--------------QGRFRRDLFYRLS-ILRLQ-LPPLRERVADILPLAESFLKQSLAAL-  423 (538)
T ss_pred             ---eEEEEecCCCHHHHHh--------------cccchHHHHHHhc-CCeec-CCChhhchhHHHHHHHHHHHHHHHHc-
Confidence               4599999987655443              4689999999994 55555 348876  899999999998865543 


Q ss_pred             cCCCccccCCHHHH-------HHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccC
Q 036633          420 DSKAVIVCPSTSAL-------VHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELG  492 (550)
Q Consensus       420 ~~~~~~l~~~~~a~-------~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~  492 (550)
                        +.   .++++++       +.|..+.||  | |+|+|+++|++ .+.  +.++.  ..  ..++.....+.+...  .
T Consensus       424 --~~---~~~~~a~~~~~~a~~~L~~y~WP--G-NvREL~nvier-~~i--~~~~~--~~--~~i~~~~l~~~~~~~--~  486 (538)
T PRK15424        424 --SA---PFSAALRQGLQQCETLLLHYDWP--G-NVRELRNLMER-LAL--FLSVE--PT--PDLTPQFLQLLLPEL--A  486 (538)
T ss_pred             --CC---CCCHHHHHhhHHHHHHHHhCCCC--c-hHHHHHHHHHH-HHH--hcCCC--Cc--CccCHHHhhhhcccc--c
Confidence              22   3555554       788888887  8 99999999997 111  11111  00  112222111111100  0


Q ss_pred             CCCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633          493 GGGGGGVEYWWEESTEGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC  542 (550)
Q Consensus       493 ~dk~g~~~y~~~~~~~~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~  542 (550)
                       ..  .       ........+.+.+..+|++..+|....|+.|.+.+.+
T Consensus       487 -~~--~-------~~~~~~~~Er~~I~~~L~~~~Gn~~~aA~~LGIsRtT  526 (538)
T PRK15424        487 -RE--S-------AKTPAPRLLAATLQQALERFNGDKTAAANYLGISRTT  526 (538)
T ss_pred             -cc--c-------cccchhHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHH
Confidence             00  0       0001123577789999999999999999999998754

>CHL00181 cbbX CbbX; Provisional

Probab=99.89  E-value=1.5e-22  Score=205.61  Aligned_cols=224  Identities=17%  Similarity=0.214  Sum_probs=161.3

Q ss_pred             HHHHHHhhhhcCcccCcHHHHHHHHHHHhcch----hhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCC
Q 036633          195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPK----AAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DND  269 (550)
Q Consensus       195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~----~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~  269 (550)
                      ..+..+.+.|...++|++.++++|.+.+....    ....|+..++.+.+++|+||||||||++|+++|+.++..+ ...
T Consensus        12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~   91 (287)
T CHL00181         12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKK   91 (287)
T ss_pred             cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence            44778889999999999999988766543210    0145766554347899999999999999999999986533 233


Q ss_pred             CceeEEecCCCCchhhhhhHHh----HHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccC
Q 036633          270 NHLIHFDMGNYTELESIKHFFD----SLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRG  336 (550)
Q Consensus       270 ~~li~id~s~~~~~~~~s~liG----~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~  336 (550)
                      .+++.++++++     ++.++|    ...+.+.+..++||||||++.+         .+++++.|++.++++  +     
T Consensus        92 ~~~~~v~~~~l-----~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~--~-----  159 (287)
T CHL00181         92 GHLLTVTRDDL-----VGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ--R-----  159 (287)
T ss_pred             CceEEecHHHH-----HHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC--C-----
Confidence            46888886543     334444    2234455566789999999975         578999999999987  5     


Q ss_pred             CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHH
Q 036633          337 IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKR  416 (550)
Q Consensus       337 g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~  416 (550)
                            .+++||++++...  +..             + -.++|+|.+||+.+|.|.   |++.+++..|+..++.+.  
T Consensus       160 ------~~~~vI~ag~~~~--~~~-------------~-~~~np~L~sR~~~~i~F~---~~t~~el~~I~~~~l~~~--  212 (287)
T CHL00181        160 ------DDLVVIFAGYKDR--MDK-------------F-YESNPGLSSRIANHVDFP---DYTPEELLQIAKIMLEEQ--  212 (287)
T ss_pred             ------CCEEEEEeCCcHH--HHH-------------H-HhcCHHHHHhCCceEEcC---CcCHHHHHHHHHHHHHHh--
Confidence                  5677888766421  100             0 123699999999999999   999999999999999762  


Q ss_pred             HhccCCCccccCCHH----HHHHHHhcCc-ccCCCcccHHHHHHcc--hhhHHHHHh
Q 036633          417 RNNDSKAVIVCPSTS----ALVHIASNAA-RKYGQNGEGLKRWMDQ--RPSADHVID  466 (550)
Q Consensus       417 ~l~~~~~~~l~~~~~----a~~~L~~~~~-~~~GaN~R~L~~~i~~--~~la~~~l~  466 (550)
                           +.   .++++    +.+++...++ +.+| |+|.+++++++  ..-+..++.
T Consensus       213 -----~~---~l~~~~~~~L~~~i~~~~~~~~~G-NaR~vrn~ve~~~~~~~~r~~~  260 (287)
T CHL00181        213 -----QY---QLTPEAEKALLDYIKKRMEQPLFA-NARSVRNALDRARMRQANRIFE  260 (287)
T ss_pred             -----cC---CCChhHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHHHHHHHHc
Confidence                 22   34444    4555555566 7889 99999999998  444444444

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=99.89  E-value=2.2e-22  Score=219.23  Aligned_cols=283  Identities=16%  Similarity=0.168  Sum_probs=199.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|++.++..+...+.+.         ...+.++|+.|++||||+.+|++|+....+   .+.||+.+||+.+.+...
T Consensus       212 ~~iiG~S~~m~~~~~~i~~~---------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r---~~~pfv~inC~~l~e~ll  279 (526)
T TIGR02329       212 DDLLGASAPMEQVRALVRLY---------ARSDATVLILGESGTGKELVAQAIHQLSGR---RDFPFVAINCGAIAESLL  279 (526)
T ss_pred             hheeeCCHHHHHHHHHHHHH---------hCCCCcEEEECCCCcCHHHHHHHHHHhcCc---CCCCEEEeccccCChhHH
Confidence            34999999999999999876         113379999999999999999999998877   788999999999998777


Q ss_pred             hhhHHh----HHHHHHH--------hCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-C---CeEeecCCeEEEE
Q 036633          286 IKHFFD----SLAALVK--------KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-G---IAAFDLTNTLIIM  349 (550)
Q Consensus       286 ~s~liG----~lt~al~--------~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~---g~~vd~~~~iiI~  349 (550)
                      .+.|||    .+|++.+        ...+++||||||+.+++++|..|+++++++  . +.. +   ...+|+   .||+
T Consensus       280 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~--~-~~r~g~~~~~~~dv---RiIa  353 (526)
T TIGR02329       280 EAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEER--E-VVRVGGTEPVPVDV---RVVA  353 (526)
T ss_pred             HHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcC--c-EEecCCCceeeecc---eEEe
Confidence            888888    5555432        234689999999999999999999999999  5 433 2   333444   4999


Q ss_pred             eCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCcccc
Q 036633          350 TSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVC  427 (550)
Q Consensus       350 TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~  427 (550)
                      |||........              .+.|+++|++|++ .+.+. .|||.+  +|+..++..+|.++...   .++   .
T Consensus       354 at~~~l~~~v~--------------~g~fr~dL~~rL~-~~~I~-lPPLReR~eDI~~L~~~fl~~~~~~---~~~---~  411 (526)
T TIGR02329       354 ATHCALTTAVQ--------------QGRFRRDLFYRLS-ILRIA-LPPLRERPGDILPLAAEYLVQAAAA---LRL---P  411 (526)
T ss_pred             ccCCCHHHHhh--------------hcchhHHHHHhcC-CcEEe-CCCchhchhHHHHHHHHHHHHHHHH---cCC---C
Confidence            99987655433              4689999999995 44444 338876  89999999999887654   233   5


Q ss_pred             CCHHHHHH-------HHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcc
Q 036633          428 PSTSALVH-------IASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVE  500 (550)
Q Consensus       428 ~~~~a~~~-------L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~  500 (550)
                      ++++++..       |..+.||  | |+|.|++++++ .+..  ..  ...++.  |+.+.....+...... .....  
T Consensus       412 ~~~~a~~~~~~~~~~L~~y~WP--G-NvrEL~nvier-~~i~--~~--~~~~~~--I~~~~l~~~~~~~~~~-~~~~~--  478 (526)
T TIGR02329       412 DSEAAAQVLAGVADPLQRYPWP--G-NVRELRNLVER-LALE--LS--AMPAGA--LTPDVLRALAPELAEA-SGKGK--  478 (526)
T ss_pred             CCHHHHHHhHHHHHHHHhCCCC--c-hHHHHHHHHHH-HHHh--cc--cCCCCc--cCHHHhhhhchhhccc-ccccc--
Confidence            89999888       9998887  8 99999999997 1111  00  001111  2222211111110000 00000  


Q ss_pred             cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633          501 YWWEESTEGLSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC  542 (550)
Q Consensus       501 y~~~~~~~~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~  542 (550)
                       ....+-..+...|.+.+..+|++..+|....|+.|.+.+.+
T Consensus       479 -~~~~~l~~~~~~Er~~I~~aL~~~~Gn~~~aA~~LGIsRtT  519 (526)
T TIGR02329       479 -TSALSLRERSRVEALAVRAALERFGGDRDAAAKALGISRTT  519 (526)
T ss_pred             -cCccchHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence             00000011223466678899999999999999999998754

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=99.89  E-value=2.1e-22  Score=226.93  Aligned_cols=280  Identities=18%  Similarity=0.146  Sum_probs=203.9

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|++.++..+...+.+.   .      ..+.+++|+|++||||+.+|++|+....+   ...||+.+||+.+++..-
T Consensus       325 ~~l~g~s~~~~~~~~~~~~~---a------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r---~~~pfv~vnc~~~~~~~~  392 (638)
T PRK11388        325 DHMPQDSPQMRRLIHFGRQA---A------KSSFPVLLCGEEGVGKALLAQAIHNESER---AAGPYIAVNCQLYPDEAL  392 (638)
T ss_pred             cceEECCHHHHHHHHHHHHH---h------CcCCCEEEECCCCcCHHHHHHHHHHhCCc---cCCCeEEEECCCCChHHH
Confidence            46899999999999988876   1      12367999999999999999999999887   778999999999988776


Q ss_pred             hhhHHhHHHH--------HHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC----CeEeecCCeEEEEeCCC
Q 036633          286 IKHFFDSLAA--------LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG----IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG~lt~--------al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~----g~~vd~~~~iiI~TsN~  353 (550)
                      .+.|+|..+.        .+....+++||||||+.+++++|..|++++++|  . ++..    ...+|++   ||+|||.
T Consensus       393 ~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~--~-~~~~~~~~~~~~~~r---iI~~t~~  466 (638)
T PRK11388        393 AEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTG--V-ITRLDSRRLIPVDVR---VIATTTA  466 (638)
T ss_pred             HHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcC--c-EEeCCCCceEEeeEE---EEEeccC
Confidence            7788884321        233345689999999999999999999999999  5 5432    2345554   9999998


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      +......              .+.|+++|++|+ ..+.+. .|||.+  +|+..++..++.++..++   +. .+.++++
T Consensus       467 ~l~~~~~--------------~~~f~~dL~~~l-~~~~i~-lPpLreR~~Di~~L~~~~l~~~~~~~---~~-~~~~s~~  526 (638)
T PRK11388        467 DLAMLVE--------------QNRFSRQLYYAL-HAFEIT-IPPLRMRREDIPALVNNKLRSLEKRF---ST-RLKIDDD  526 (638)
T ss_pred             CHHHHHh--------------cCCChHHHhhhh-ceeEEe-CCChhhhhhHHHHHHHHHHHHHHHHh---CC-CCCcCHH
Confidence            7654433              478999999999 455655 348876  799999999999876654   33 4579999


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhcccccccc--CCCCCCCcccccccccCC
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTEL--GGGGGGGVEYWWEESTEG  509 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l--~~dk~g~~~y~~~~~~~~  509 (550)
                      +++.|..+.||  | |+|+|++++++ .+..  .     ++..+  +.+   +++.....  .......  -... ....
T Consensus       527 a~~~L~~y~WP--G-NvreL~~~l~~-~~~~--~-----~~~~i--~~~---~lp~~~~~~~~~~~~~~--~~~~-~~~~  587 (638)
T PRK11388        527 ALARLVSYRWP--G-NDFELRSVIEN-LALS--S-----DNGRI--RLS---DLPEHLFTEQATDDVSA--TRLS-TSLS  587 (638)
T ss_pred             HHHHHHcCCCC--C-hHHHHHHHHHH-HHHh--C-----CCCee--cHH---HCchhhhcccccccccc--cccc-cchh
Confidence            99999999997  8 99999999996 2211  1     12222  222   22211100  0000000  0000 0112


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633          510 LSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC  542 (550)
Q Consensus       510 lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~  542 (550)
                      +...|.+.+..+|++.++|+...|+.|.+.+.+
T Consensus       588 l~~~E~~~i~~al~~~~gn~~~aA~~LGisR~T  620 (638)
T PRK11388        588 LAELEKEAIINAAQVCGGRIQEMAALLGIGRTT  620 (638)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHH
Confidence            344577788999999999999999999998754

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.88  E-value=3e-22  Score=208.12  Aligned_cols=301  Identities=17%  Similarity=0.144  Sum_probs=197.5

Q ss_pred             HhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          200 VQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       200 l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      +.......+||.+....++.+.++..         +....++|+.|+|||||+.+|+.|+....+.  ...|||.+||+.
T Consensus        72 ~~~~~~~~LIG~~~~~~~~~eqik~~---------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~--~~~PFI~~NCa~  140 (403)
T COG1221          72 LKSEALDDLIGESPSLQELREQIKAY---------APSGLPVLIIGETGTGKELFARLIHALSARR--AEAPFIAFNCAA  140 (403)
T ss_pred             ccchhhhhhhccCHHHHHHHHHHHhh---------CCCCCcEEEecCCCccHHHHHHHHHHhhhcc--cCCCEEEEEHHH
Confidence            33444567999999999999999976         1122799999999999999999999554441  478999999999


Q ss_pred             CCchhhhhhHHh----HHHHHHHhCC-------CCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEE
Q 036633          280 YTELESIKHFFD----SLAALVKKRP-------YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLI  347 (550)
Q Consensus       280 ~~~~~~~s~liG----~lt~al~~~p-------~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~ii  347 (550)
                      |+++...+.|||    .||++...++       ++++|||||+.+++..|..|++++|+|.++++... ...+|++   +
T Consensus       141 ~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVR---l  217 (403)
T COG1221         141 YSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVR---L  217 (403)
T ss_pred             hCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCce---e
Confidence            999999999999    7777655444       58999999999999999999999999943333333 4555555   9


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhc-cceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCc
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLL-DKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAV  424 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Ri-d~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~  424 (550)
                      |++||........               ..  .+|..|+ ..+|..+   ||.+  +|+..++..++.....++...   
T Consensus       218 i~AT~~~l~~~~~---------------~g--~dl~~rl~~~~I~LP---pLrER~~Di~~L~e~Fl~~~~~~l~~~---  274 (403)
T COG1221         218 ICATTEDLEEAVL---------------AG--ADLTRRLNILTITLP---PLRERKEDILLLAEHFLKSEARRLGLP---  274 (403)
T ss_pred             eeccccCHHHHHH---------------hh--cchhhhhcCceecCC---ChhhchhhHHHHHHHHHHHHHHHcCCC---
Confidence            9999875432211               11  4788844 4445555   8865  889999999998877775332   


Q ss_pred             cccCCHHHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCC-Cccccc
Q 036633          425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGG-GVEYWW  503 (550)
Q Consensus       425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g-~~~y~~  503 (550)
                      ....++++...|..+.||  | |+|+|++.|++ .++..-..+...+.  ..+... ....+........... ....+.
T Consensus       275 ~~~~~~~a~~~L~~y~~p--G-NirELkN~Ve~-~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  347 (403)
T COG1221         275 LSVDSPEALRALLAYDWP--G-NIRELKNLVER-AVAQASGEGQDLED--LIISIR-LDELPGLNDVPAGISLQLNLPEL  347 (403)
T ss_pred             CCCCCHHHHHHHHhCCCC--C-cHHHHHHHHHH-HHHHhccccCCccc--ccchhh-hccccccccchhhhhhhhhhHHH
Confidence            123446999999998886  8 99999999997 44433222211111  111110 0001100000000000 001122


Q ss_pred             ccccCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 036633          504 EESTEGLSLEELK--KYMDSLEALRNNVAIKLEEMMMRRACER  544 (550)
Q Consensus       504 ~~~~~~lsl~ele--q~~~ale~l~~nl~~~a~~l~~~~~~~~  544 (550)
                      ..+.........+  .+..+++....+....+..+.+...+-.
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lg~s~~~l~  390 (403)
T COG1221         348 PLSLRETSLEQVEERLLQKALEQNKGNKKKAARLLGISRKTLR  390 (403)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHhhccHHHHHHHcCCCHHHHH
Confidence            2222222223333  4667888888888888888777665433

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=3.6e-22  Score=196.87  Aligned_cols=253  Identities=21%  Similarity=0.240  Sum_probs=184.8

Q ss_pred             HHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC------CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCC
Q 036633          197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR------QL-GLFLFAGPNCSGKAELAKAIANELYDNNDND  269 (550)
Q Consensus       197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~------~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~  269 (550)
                      -..+...|++.||||+.|++.++-+++.+   +..+....      -. .++|+.||||+|||.||+.||+.|.-     
T Consensus        52 P~eik~~Ld~YVIGQe~AKKvLsVAVYNH---YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnV-----  123 (408)
T COG1219          52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNH---YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNV-----  123 (408)
T ss_pred             hHHHHHHhhhheecchhhhceeeeeehhH---HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCC-----
Confidence            45788899999999999999888877765   44443221      11 68999999999999999999999988     


Q ss_pred             CceeEEecCCCCchhhhhhHHh----HHHHH----HHhCCCCeEEeccccccC--------------HHHHHHHHHhhhh
Q 036633          270 NHLIHFDMGNYTELESIKHFFD----SLAAL----VKKRPYSVVLFDKIEKAN--------------SSILNLLLKILKT  327 (550)
Q Consensus       270 ~~li~id~s~~~~~~~~s~liG----~lt~a----l~~~p~~VlllDEIeka~--------------~~v~~~Ll~~ld~  327 (550)
                       ||.--|+..+++..++..-+-    .|..+    +.+...++|++|||||..              ..||++||++++.
T Consensus       124 -PFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEG  202 (408)
T COG1219         124 -PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEG  202 (408)
T ss_pred             -CeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcC
Confidence             999999999988877543332    22221    334456899999999975              3699999999975


Q ss_pred             ccccccccC-Ce--------EeecCCeEEEEeCCC-ChHHHHHhhhh--------h-----hH---hhHH------HHhc
Q 036633          328 DFNRKATRG-IA--------AFDLTNTLIIMTSDL-KDEQVYEVMLT--------A-----TY---GRVN------EVTG  375 (550)
Q Consensus       328 g~~~~l~d~-g~--------~vd~~~~iiI~TsN~-g~~~~~~~~~~--------~-----~~---~~~~------~~l~  375 (550)
                      -... +.-. ||        .+|.+|.+||+..-+ |.+.+.....+        +     ..   ..+.      +.++
T Consensus       203 Tvas-VPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvk  281 (408)
T COG1219         203 TVAS-VPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVK  281 (408)
T ss_pred             ceec-cCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHH
Confidence            4222 4443 55        488899988886544 55555432210        0     00   1111      2223


Q ss_pred             cCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHH----hccCCCccccCCHHHHHHHHhcCc-ccCCCcccH
Q 036633          376 SLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRR----NNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEG  450 (550)
Q Consensus       376 ~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~----l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~  450 (550)
                      =.+-|+|++|++.+..+.   +|+.+++.+|+..--+.+..+    +.-.++ .|.|+++|+..++..+. ...||  |+
T Consensus       282 FGLIPEfIGRlPvia~L~---~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V-~L~F~~~AL~~IA~~A~~rkTGA--RG  355 (408)
T COG1219         282 FGLIPEFIGRLPVIATLE---ELDEDALVQILTEPKNALVKQYQKLFEMDGV-ELEFTEEALKAIAKKAIERKTGA--RG  355 (408)
T ss_pred             cCCcHHHhcccceeeehh---hcCHHHHHHHHhcccHHHHHHHHHHhcccCc-eEEEcHHHHHHHHHHHHHhccch--hH
Confidence            335799999999999999   999999999986544444433    344678 99999999999999888 88899  99


Q ss_pred             HHHHHcchhhHHHHHh
Q 036633          451 LKRWMDQRPSADHVID  466 (550)
Q Consensus       451 L~~~i~~~~la~~~l~  466 (550)
                      |+.+++. .+-+.++.
T Consensus       356 LRsI~E~-~lld~Mfe  370 (408)
T COG1219         356 LRSIIEE-LLLDVMFE  370 (408)
T ss_pred             HHHHHHH-HHHHHHhh
Confidence            9999996 55555554

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.88  E-value=2.1e-21  Score=197.25  Aligned_cols=212  Identities=16%  Similarity=0.199  Sum_probs=154.5

Q ss_pred             HHHHhhhhcCcccCcHHHHHHHHHHHhcch----hhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC-CCCC
Q 036633          197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPK----AAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN-DNDN  270 (550)
Q Consensus       197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~----~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~  270 (550)
                      ++++...|.+.++|.+++++.|.+.+....    ..+.|+.. ..| .+++|+||||||||++|+++|+.++..+ ....
T Consensus        13 ~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~   91 (284)
T TIGR02880        13 ITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG   91 (284)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc
Confidence            556667777889999999988766543210    01456643 346 6999999999999999999999886532 1234


Q ss_pred             ceeEEecCCCCchhhhhhHHh----HHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccCC
Q 036633          271 HLIHFDMGNYTELESIKHFFD----SLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRGI  337 (550)
Q Consensus       271 ~li~id~s~~~~~~~~s~liG----~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~g  337 (550)
                      +++.++++++     ++.++|    ...+.+.+..++||||||++.+         ++++++.|++.++++  +      
T Consensus        92 ~~v~v~~~~l-----~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~--~------  158 (284)
T TIGR02880        92 HLVSVTRDDL-----VGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ--R------  158 (284)
T ss_pred             eEEEecHHHH-----hHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC--C------
Confidence            7888887654     233444    2334455555689999999976         467899999999987  5      


Q ss_pred             eEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 036633          338 AAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRR  417 (550)
Q Consensus       338 ~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~  417 (550)
                           .+++||++++......                --.++|+|.+||+..|.|+   ||+.+++..|+..++.+    
T Consensus       159 -----~~~~vI~a~~~~~~~~----------------~~~~np~L~sR~~~~i~fp---~l~~edl~~I~~~~l~~----  210 (284)
T TIGR02880       159 -----DDLVVILAGYKDRMDS----------------FFESNPGFSSRVAHHVDFP---DYSEAELLVIAGLMLKE----  210 (284)
T ss_pred             -----CCEEEEEeCCcHHHHH----------------HHhhCHHHHhhCCcEEEeC---CcCHHHHHHHHHHHHHH----
Confidence                 5677888776431100                0134899999999999999   99999999999999876    


Q ss_pred             hccCCCccccCCHHHHHHHHhc----Cc-ccCCCcccHHHHHHcc
Q 036633          418 NNDSKAVIVCPSTSALVHIASN----AA-RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       418 l~~~~~~~l~~~~~a~~~L~~~----~~-~~~GaN~R~L~~~i~~  457 (550)
                         .+.   .+++++.+.+..+    ++ +++| |+|.+++++++
T Consensus       211 ---~~~---~l~~~a~~~L~~~l~~~~~~~~~G-N~R~lrn~ve~  248 (284)
T TIGR02880       211 ---QQY---RFSAEAEEAFADYIALRRTQPHFA-NARSIRNAIDR  248 (284)
T ss_pred             ---hcc---ccCHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHH
Confidence               222   4677777776654    44 6679 99999999998

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.88  E-value=6.4e-22  Score=205.78  Aligned_cols=249  Identities=17%  Similarity=0.185  Sum_probs=183.2

Q ss_pred             HHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCC----CCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633          198 MRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL----SSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI  273 (550)
Q Consensus       198 ~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl----~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li  273 (550)
                      ..+...|++.|+||++|++.++.+++... .+.++    .....|.++||+||||||||++|++||+.+..      +|+
T Consensus         4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~-~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~------~fi   76 (441)
T TIGR00390         4 REIVAELDKYIIGQDNAKKSVAIALRNRY-RRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA------PFI   76 (441)
T ss_pred             HHHHHHHhhhccCHHHHHHHHHHHHHhhh-hhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC------eEE
Confidence            35678899999999999999999998530 03333    23335689999999999999999999999977      999


Q ss_pred             EEecCCCCchhhhh--------hHHh----------------------------HH------------------------
Q 036633          274 HFDMGNYTELESIK--------HFFD----------------------------SL------------------------  293 (550)
Q Consensus       274 ~id~s~~~~~~~~s--------~liG----------------------------~l------------------------  293 (550)
                      .+|++.|.+...+.        .++.                            .|                        
T Consensus        77 ~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~  156 (441)
T TIGR00390        77 KVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAF  156 (441)
T ss_pred             EeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHH
Confidence            99988775421110        1100                            00                        


Q ss_pred             --------------------------------------------------------------------------------
Q 036633          294 --------------------------------------------------------------------------------  293 (550)
Q Consensus       294 --------------------------------------------------------------------------------  293 (550)
                                                                                                      
T Consensus       157 ~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~  236 (441)
T TIGR00390       157 RKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEE  236 (441)
T ss_pred             HHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHH
Confidence                                                                                            


Q ss_pred             --HHHHHh-CCCCeEEeccccccCH------------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHH
Q 036633          294 --AALVKK-RPYSVVLFDKIEKANS------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQV  358 (550)
Q Consensus       294 --t~al~~-~p~~VlllDEIeka~~------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~  358 (550)
                        .+|+.. ...+|||+|||||...            .||..||++++..  . +.-..-.||..|.+||++.-+.... 
T Consensus       237 v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt--~-v~~k~~~v~T~~ILFI~~GAF~~~k-  312 (441)
T TIGR00390       237 IKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGS--T-VNTKYGMVKTDHILFIAAGAFQLAK-  312 (441)
T ss_pred             HHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCc--e-eeecceeEECCceeEEecCCcCCCC-
Confidence              011112 3468999999999752            5999999999876  3 3323447999999999976543210 


Q ss_pred             HHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH----HHHHHHHHHHhccCCCccccCCHHHHH
Q 036633          359 YEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR----EWACEETKRRNNDSKAVIVCPSTSALV  434 (550)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~----~~~l~~~~~~l~~~~~~~l~~~~~a~~  434 (550)
                                      -.-+-|||.+|++.++.+.   ||+.+++..|+    ...+.++...+...|+ .|.|++++++
T Consensus       313 ----------------p~DlIPEl~GR~Pi~v~L~---~L~~edL~rILteP~nsLikQy~~Lf~~egv-~L~Ftd~Al~  372 (441)
T TIGR00390       313 ----------------PSDLIPELQGRFPIRVELQ---ALTTDDFERILTEPKNSLIKQYKALMKTEGV-NIEFSDEAIK  372 (441)
T ss_pred             ----------------hhhccHHHhCccceEEECC---CCCHHHHHHHhcCChhHHHHHHHHHHhhcCc-EEEEeHHHHH
Confidence                            0126799999999999999   99999999999    4566667777777899 9999999999


Q ss_pred             HHHhcCc------ccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccc
Q 036633          435 HIASNAA------RKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKE  480 (550)
Q Consensus       435 ~L~~~~~------~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~  480 (550)
                      +|++.++      .+.||  |.|+.++++ .|.+..+...-.....+.|+..
T Consensus       373 ~IA~~A~~~N~~~~~iGA--R~LrtilE~-~l~d~~fe~p~~~~~~v~I~~~  421 (441)
T TIGR00390       373 RIAELAYNVNEKTENIGA--RRLHTVLER-LLEDISFEAPDLSGQNITIDAD  421 (441)
T ss_pred             HHHHHHHHhcccccccch--hhHHHHHHH-HHHHHHhcCCCCCCCEEEECHH
Confidence            9998765      37899  999999996 7777766644333444444443

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.87  E-value=2.1e-21  Score=201.15  Aligned_cols=293  Identities=13%  Similarity=0.085  Sum_probs=197.7

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ...++|.+.++..+.+.+.+.         ...+.+++++|++||||+.+|++|+....+   ...||+.+||+.+.+..
T Consensus         5 ~~~liG~S~~~~~~~~~i~~~---------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r---~~~pfv~v~c~~~~~~~   72 (326)
T PRK11608          5 KDNLLGEANSFLEVLEQVSRL---------APLDKPVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAALNENL   72 (326)
T ss_pred             cCccEECCHHHHHHHHHHHHH---------hCCCCCEEEECCCCCcHHHHHHHHHHhCCc---cCCCeEEEeCCCCCHHH
Confidence            356899999999999999877         123378999999999999999999988876   67899999999997655


Q ss_pred             hhhhHHh----HHHH-------HHHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-CCeEeecCCeEEEEeCC
Q 036633          285 SIKHFFD----SLAA-------LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-GIAAFDLTNTLIIMTSD  352 (550)
Q Consensus       285 ~~s~liG----~lt~-------al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~g~~vd~~~~iiI~TsN  352 (550)
                      ..+.+||    .+++       .+....+++||||||+.+++.+|..|++++++|  . +.. ++...--.++.||+||+
T Consensus        73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~--~-~~~~g~~~~~~~~~RiI~~s~  149 (326)
T PRK11608         73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYG--E-LERVGGSQPLQVNVRLVCATN  149 (326)
T ss_pred             HHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcC--c-EEeCCCCceeeccEEEEEeCc
Confidence            5566777    1222       234455689999999999999999999999999  5 433 22211113466999998


Q ss_pred             CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc-eeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCC
Q 036633          353 LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK-LVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPS  429 (550)
Q Consensus       353 ~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~-ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~  429 (550)
                      ........              .+.|+++|++|+.. .|.++   ||.+  +|+..++..++..+..++... + ...++
T Consensus       150 ~~l~~l~~--------------~g~f~~dL~~~l~~~~i~lP---pLReR~eDI~~L~~~fl~~~~~~~~~~-~-~~~~s  210 (326)
T PRK11608        150 ADLPAMVA--------------EGKFRADLLDRLAFDVVQLP---PLRERQSDIMLMAEHFAIQMCRELGLP-L-FPGFT  210 (326)
T ss_pred             hhHHHHHH--------------cCCchHHHHHhcCCCEEECC---ChhhhhhhHHHHHHHHHHHHHHHhCCC-C-CCCCC
Confidence            76554433              47899999999943 44555   8875  899999999998876654322 1 14789


Q ss_pred             HHHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccC--CCCCCCccccccccc
Q 036633          430 TSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELG--GGGGGGVEYWWEEST  507 (550)
Q Consensus       430 ~~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~--~dk~g~~~y~~~~~~  507 (550)
                      ++++..|..+.||  | |+|.|++++++ .+..  ..+     +.+.+...............  ...........+.+.
T Consensus       211 ~~al~~L~~y~WP--G-NvrEL~~vl~~-a~~~--~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (326)
T PRK11608        211 ERARETLLNYRWP--G-NIRELKNVVER-SVYR--HGT-----SEYPLDNIIIDPFKRRPAEEAIAVSETTSLPTLPLDL  279 (326)
T ss_pred             HHHHHHHHhCCCC--c-HHHHHHHHHHH-HHHh--cCC-----CCCchhhcccccccccccccccccccccccccccccH
Confidence            9999999999997  8 99999999997 2111  011     11111000000000000000  000000000000000


Q ss_pred             C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633          508 E-GLSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC  542 (550)
Q Consensus       508 ~-~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~  542 (550)
                      . .+...|...+..+|+...+|+...|+.|.+.+.+
T Consensus       280 ~~~l~~~Er~~I~~aL~~~~gn~~~aA~~LGIsR~t  315 (326)
T PRK11608        280 REWQHQQEKELLQRSLQQAKFNQKRAAELLGLTYHQ  315 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHH
Confidence            0 0123456678899999999999999999988754

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=99.87  E-value=6.1e-21  Score=190.52  Aligned_cols=215  Identities=16%  Similarity=0.205  Sum_probs=176.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|++..++.+....++.   .  +.+    +++|+.|.|||||-.+|++-+....+   ..+||+.+||+.+++...
T Consensus       204 ~~~v~~S~~mk~~v~qA~k~---A--mlD----APLLI~GeTGTGKdLlAkaCH~~S~R---~~~pFlalNCA~lPe~~a  271 (511)
T COG3283         204 EQIVAVSPKMKHVVEQAQKL---A--MLD----APLLITGETGTGKDLLAKACHLASPR---HSKPFLALNCASLPEDAA  271 (511)
T ss_pred             HHHhhccHHHHHHHHHHHHh---h--ccC----CCeEEecCCCchHHHHHHHHhhcCcc---cCCCeeEeecCCCchhHh
Confidence            45899999999998888866   1  111    68999999999999999999999998   899999999999999999


Q ss_pred             hhhHHhH------HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHH
Q 036633          286 IKHFFDS------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQV  358 (550)
Q Consensus       286 ~s~liG~------lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~  358 (550)
                      .|.+||.      -.+.+....++.||||||..++|..|..||+++.+|+.+++... ...+|.   .+|+||..+...+
T Consensus       272 EsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdV---RVIcatq~nL~~l  348 (511)
T COG3283         272 ESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDV---RVICATQVNLVEL  348 (511)
T ss_pred             HHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEE---EEEecccccHHHH
Confidence            9999991      11223334568999999999999999999999999943322222 334544   4999998877666


Q ss_pred             HHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633          359 YEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI  436 (550)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L  436 (550)
                      ..              +..|+.++++|+ ++..++ .|||.+  +|+..+++.++.++.+.+.--   .-.++++...+|
T Consensus       349 v~--------------~g~fReDLfyRL-NVLtl~-~PpLRer~~di~pL~e~Fv~q~s~elg~p---~pkl~~~~~~~L  409 (511)
T COG3283         349 VQ--------------KGKFREDLFYRL-NVLTLN-LPPLRERPQDIMPLAELFVQQFSDELGVP---RPKLAADLLTVL  409 (511)
T ss_pred             Hh--------------cCchHHHHHHHh-heeeec-CCccccCcccchHHHHHHHHHHHHHhCCC---CCccCHHHHHHH
Confidence            55              678999999999 688888 558876  899999999999988876433   557899999999


Q ss_pred             HhcCcccCCCcccHHHHHHcc
Q 036633          437 ASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       437 ~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ..|.||  | |+|.|++.|-+
T Consensus       410 ~~y~Wp--G-NVRqL~N~iyR  427 (511)
T COG3283         410 TRYAWP--G-NVRQLKNAIYR  427 (511)
T ss_pred             HHcCCC--c-cHHHHHHHHHH
Confidence            999987  8 99999999997

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=99.87  E-value=2.7e-21  Score=212.08  Aligned_cols=215  Identities=14%  Similarity=0.126  Sum_probs=170.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      +.++|++.++..+...+.+.   .      ..+.+++++|++||||+.+|++++....+   ...||+.+||+.+.+...
T Consensus       204 ~~~ig~s~~~~~~~~~~~~~---A------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r---~~~pfv~inca~~~~~~~  271 (520)
T PRK10820        204 SQIVAVSPKMRQVVEQARKL---A------MLDAPLLITGDTGTGKDLLAYACHLRSPR---GKKPFLALNCASIPDDVV  271 (520)
T ss_pred             cceeECCHHHHHHHHHHHHH---h------CCCCCEEEECCCCccHHHHHHHHHHhCCC---CCCCeEEeccccCCHHHH
Confidence            47999999999999988865   1      12257999999999999999999999887   778999999999988777


Q ss_pred             hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633          286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~  353 (550)
                      .+.|||    .++++       +....+++||||||+.+++.+|..|++++++|  . ++.. +...-..++.||+||+.
T Consensus       272 e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~--~-~~~~g~~~~~~~~vRiI~st~~  348 (520)
T PRK10820        272 ESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDG--T-FRRVGEDHEVHVDVRVICATQK  348 (520)
T ss_pred             HHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcC--C-cccCCCCcceeeeeEEEEecCC
Confidence            778887    23222       33345689999999999999999999999999  5 4433 22111234559999988


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      .......              .+.|+++|++|+. ++.+. .|||.+  +|+..++..++.++..+....   ...++++
T Consensus       349 ~l~~l~~--------------~g~f~~dL~~rL~-~~~i~-lPpLreR~~Di~~L~~~fl~~~~~~~g~~---~~~ls~~  409 (520)
T PRK10820        349 NLVELVQ--------------KGEFREDLYYRLN-VLTLN-LPPLRDRPQDIMPLTELFVARFADEQGVP---RPKLAAD  409 (520)
T ss_pred             CHHHHHH--------------cCCccHHHHhhcC-eeEEe-CCCcccChhHHHHHHHHHHHHHHHHcCCC---CCCcCHH
Confidence            7655443              4789999999994 45555 348876  799999999999877664332   3478999


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++++|..+.||  | |+|.|++++++
T Consensus       410 a~~~L~~y~WP--G-NvreL~nvl~~  432 (520)
T PRK10820        410 LNTVLTRYGWP--G-NVRQLKNAIYR  432 (520)
T ss_pred             HHHHHhcCCCC--C-HHHHHHHHHHH
Confidence            99999999887  8 99999999997

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=99.87  E-value=8.5e-21  Score=215.28  Aligned_cols=280  Identities=15%  Similarity=0.162  Sum_probs=199.5

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI  286 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~  286 (550)
                      .++|++.++..+...+.+.   .      ..+.+++++||+|||||.+|++|+.....   ...+|+.+||+.+.+....
T Consensus       377 ~liG~S~~~~~~~~~~~~~---a------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r---~~~~~v~i~c~~~~~~~~~  444 (686)
T PRK15429        377 EIIGRSEAMYSVLKQVEMV---A------QSDSTVLILGETGTGKELIARAIHNLSGR---NNRRMVKMNCAAMPAGLLE  444 (686)
T ss_pred             ceeecCHHHHHHHHHHHHH---h------CCCCCEEEECCCCcCHHHHHHHHHHhcCC---CCCCeEEEecccCChhHhh
Confidence            6999999999999988876   1      12369999999999999999999999877   7789999999998766556


Q ss_pred             hhHHh----HHH-------HHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCC
Q 036633          287 KHFFD----SLA-------ALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLK  354 (550)
Q Consensus       287 s~liG----~lt-------~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g  354 (550)
                      +.++|    .++       ..+....+++||||||+.+++++|..|++++++|  . +... +...-..++.+|+|||..
T Consensus       445 ~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~--~-~~~~g~~~~~~~~~RiI~~t~~~  521 (686)
T PRK15429        445 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ--E-FERLGSNKIIQTDVRLIAATNRD  521 (686)
T ss_pred             hhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhC--C-EEeCCCCCcccceEEEEEeCCCC
Confidence            66777    122       2233445689999999999999999999999999  5 4433 222223456699999987


Q ss_pred             hHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633          355 DEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTSA  432 (550)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a  432 (550)
                      ......              .+.|+++|++|+. .+.+. .|||.+  +|+..++..++.++..++...   ...+++++
T Consensus       522 l~~~~~--------------~~~f~~~L~~~l~-~~~i~-lPpLreR~~Di~~L~~~~l~~~~~~~~~~---~~~~s~~a  582 (686)
T PRK15429        522 LKKMVA--------------DREFRSDLYYRLN-VFPIH-LPPLRERPEDIPLLVKAFTFKIARRMGRN---IDSIPAET  582 (686)
T ss_pred             HHHHHH--------------cCcccHHHHhccC-eeEEe-CCChhhhHhHHHHHHHHHHHHHHHHcCCC---CCCcCHHH
Confidence            655433              5789999999994 44454 338865  899999999999887764332   23689999


Q ss_pred             HHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcccccccccCCCCH
Q 036633          433 LVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTEGLSL  512 (550)
Q Consensus       433 ~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~~~~~~~lsl  512 (550)
                      ++.|..+.||  | |+|.|+++|++ .+.   +.    .++.+...+      +... ........   . .........
T Consensus       583 l~~L~~y~WP--G-NvrEL~~~i~~-a~~---~~----~~~~i~~~l------~~~~-~~~~~~~~---~-~~~~~~~~~  640 (686)
T PRK15429        583 LRTLSNMEWP--G-NVRELENVIER-AVL---LT----RGNVLQLSL------PDIT-LPEPETPP---A-ATVVAQEGE  640 (686)
T ss_pred             HHHHHhCCCC--C-cHHHHHHHHHH-HHH---hC----CCCcccccC------chhh-cccccccc---c-ccccccHHH
Confidence            9999999887  8 99999999997 211   11    122222211      1100 00000000   0 000011234


Q ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHhhcccC
Q 036633          513 EELKKYMDSLEALRNNVA---IKLEEMMMRRAC  542 (550)
Q Consensus       513 ~eleq~~~ale~l~~nl~---~~a~~l~~~~~~  542 (550)
                      .|.+.+..+|++..+|+.   ..|+.|.|.+.+
T Consensus       641 ~Er~~I~~aL~~~~gn~~~~~~aA~~LGi~R~t  673 (686)
T PRK15429        641 DEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTT  673 (686)
T ss_pred             HHHHHHHHHHHHcCCCcccHHHHHHHhCCCHHH
Confidence            577788999999999986   899999887753

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=99.85  E-value=2.1e-20  Score=202.05  Aligned_cols=282  Identities=15%  Similarity=0.141  Sum_probs=199.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|.+.++..+...+...   .      ....++++.|++||||+.+|++++.....   ...+|+.+||+.+.+...
T Consensus       139 ~~lig~s~~~~~l~~~i~~~---a------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~v~v~c~~~~~~~~  206 (445)
T TIGR02915       139 RGLITSSPGMQKICRTIEKI---A------PSDITVLLLGESGTGKEVLARALHQLSDR---KDKRFVAINCAAIPENLL  206 (445)
T ss_pred             cceeecCHHHHHHHHHHHHH---h------CCCCCEEEECCCCcCHHHHHHHHHHhCCc---CCCCeEEEECCCCChHHH
Confidence            35899999999988888754   1      12257889999999999999999999877   778999999999987766


Q ss_pred             hhhHHh----HHHHHH-------HhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-CCeEeecCCeEEEEeCCC
Q 036633          286 IKHFFD----SLAALV-------KKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-GIAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG----~lt~al-------~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~g~~vd~~~~iiI~TsN~  353 (550)
                      .+.+||    .++.+.       ....+++||||||+.+++.+|..|++++++|  . +.. ++....-.++.||+||+.
T Consensus       207 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~--~-~~~~~~~~~~~~~~rii~~~~~  283 (445)
T TIGR02915       207 ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQER--V-IERLGGREEIPVDVRIVCATNQ  283 (445)
T ss_pred             HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhC--e-EEeCCCCceeeeceEEEEecCC
Confidence            777777    333332       2345689999999999999999999999999  5 433 222222235569999998


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      .......              .+.|+++|++|+. .+.+. .|||.+  +|+..++..++.++...+...   ...++++
T Consensus       284 ~l~~~~~--------------~~~~~~~L~~~l~-~~~i~-lPpLr~R~~Di~~l~~~~l~~~~~~~~~~---~~~~~~~  344 (445)
T TIGR02915       284 DLKRMIA--------------EGTFREDLFYRIA-EISIT-IPPLRSRDGDAVLLANAFLERFARELKRK---TKGFTDD  344 (445)
T ss_pred             CHHHHHH--------------cCCccHHHHHHhc-cceec-CCCchhchhhHHHHHHHHHHHHHHHhCCC---CCCCCHH
Confidence            7654433              4789999999994 44454 337865  899999999999887765333   2478999


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcccccccccCCCC
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTEGLS  511 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~~~~~~~ls  511 (550)
                      ++..|..+.||  | |+|+|+++|++ .+.  ..     .+..+  +.+.   ++............  ....   ..+.
T Consensus       345 a~~~L~~~~wp--g-NvreL~~~i~~-a~~--~~-----~~~~i--~~~~---l~~~~~~~~~~~~~--~~l~---~~~~  403 (445)
T TIGR02915       345 ALRALEAHAWP--G-NVRELENKVKR-AVI--MA-----EGNQI--TAED---LGLDARERAETPLE--VNLR---EVRE  403 (445)
T ss_pred             HHHHHHhCCCC--C-hHHHHHHHHHH-HHH--hC-----CCCcc--cHHH---cCCccccccccccc--cCHH---HHHH
Confidence            99999999887  8 99999999997 221  11     12222  2221   11000000000000  0000   0122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633          512 LEELKKYMDSLEALRNNVAIKLEEMMMRRAC  542 (550)
Q Consensus       512 l~eleq~~~ale~l~~nl~~~a~~l~~~~~~  542 (550)
                      ..|.+.+..+|++..+|+...|+.|.+.+.+
T Consensus       404 ~~E~~~i~~al~~~~gn~~~aA~~Lgisr~t  434 (445)
T TIGR02915       404 RAEREAVRKAIARVDGNIARAAELLGITRPT  434 (445)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHhCCCHHH
Confidence            3466678899999999999999999998754

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.85  E-value=7.4e-21  Score=182.44  Aligned_cols=190  Identities=17%  Similarity=0.165  Sum_probs=121.4

Q ss_pred             HHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          198 MRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       198 ~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      ..+...--++++||++.+..+.-.+..+   +    ..+.+ .+++|+||||+|||++|+.||+.+..      +|..++
T Consensus        16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa---~----~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~------~~~~~s   82 (233)
T PF05496_consen   16 ERLRPKSLDEFIGQEHLKGNLKILIRAA---K----KRGEALDHMLFYGPPGLGKTTLARIIANELGV------NFKITS   82 (233)
T ss_dssp             HHTS-SSCCCS-S-HHHHHHHHHHHHHH---H----CTTS---EEEEESSTTSSHHHHHHHHHHHCT--------EEEEE
T ss_pred             HhcCCCCHHHccCcHHHHhhhHHHHHHH---H----hcCCCcceEEEECCCccchhHHHHHHHhccCC------CeEecc
Confidence            3555555688999999998876666544   1    12244 79999999999999999999999977      888777


Q ss_pred             cCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-C-----eEeecCCeEEEEe
Q 036633          277 MGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-I-----AAFDLTNTLIIMT  350 (550)
Q Consensus       277 ~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g-----~~vd~~~~iiI~T  350 (550)
                      .+.......   +.+.++. +  .+..|+|+||||++++.+|+.||.++|+|.+. +.-+ |     ..++...-.+|-+
T Consensus        83 g~~i~k~~d---l~~il~~-l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~id-iiiG~g~~ar~~~~~l~~FTligA  155 (233)
T PF05496_consen   83 GPAIEKAGD---LAAILTN-L--KEGDILFIDEIHRLNKAQQEILLPAMEDGKID-IIIGKGPNARSIRINLPPFTLIGA  155 (233)
T ss_dssp             CCC--SCHH---HHHHHHT-----TT-EEEECTCCC--HHHHHHHHHHHHCSEEE-EEBSSSSS-BEEEEE----EEEEE
T ss_pred             chhhhhHHH---HHHHHHh-c--CCCcEEEEechhhccHHHHHHHHHHhccCeEE-EEeccccccceeeccCCCceEeee
Confidence            655433222   2222332 1  45679999999999999999999999999432 2223 2     3455555445544


Q ss_pred             CCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCH
Q 036633          351 SDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPST  430 (550)
Q Consensus       351 sN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~  430 (550)
                      |+.                     ....+++|.+||..+..+.   .|+.+++.+|+.+...       ..   .+.+++
T Consensus       156 TTr---------------------~g~ls~pLrdRFgi~~~l~---~Y~~~el~~Iv~r~a~-------~l---~i~i~~  201 (233)
T PF05496_consen  156 TTR---------------------AGLLSSPLRDRFGIVLRLE---FYSEEELAKIVKRSAR-------IL---NIEIDE  201 (233)
T ss_dssp             ESS---------------------GCCTSHCCCTTSSEEEE-------THHHHHHHHHHCCH-------CT---T-EE-H
T ss_pred             ecc---------------------ccccchhHHhhcceecchh---cCCHHHHHHHHHHHHH-------Hh---CCCcCH
Confidence            443                     1467889999997666899   9999999999886442       13   568999


Q ss_pred             HHHHHHHhcCc
Q 036633          431 SALVHIASNAA  441 (550)
Q Consensus       431 ~a~~~L~~~~~  441 (550)
                      ++..+|+..+-
T Consensus       202 ~~~~~Ia~rsr  212 (233)
T PF05496_consen  202 DAAEEIARRSR  212 (233)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHHHhcC
Confidence            99999999765

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=99.85  E-value=1.4e-20  Score=204.89  Aligned_cols=215  Identities=16%  Similarity=0.159  Sum_probs=168.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|.+.++..+...+.+.   .      ....++++.|++|||||.+|++|+....+   ...+|+.+||+.+.+...
T Consensus       138 ~~lig~s~~~~~l~~~~~~~---~------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~i~i~c~~~~~~~~  205 (469)
T PRK10923        138 TDIIGEAPAMQDVFRIIGRL---S------RSSISVLINGESGTGKELVAHALHRHSPR---AKAPFIALNMAAIPKDLI  205 (469)
T ss_pred             ccceecCHHHHHHHHHHHHH---h------ccCCeEEEEeCCCCcHHHHHHHHHhcCCC---CCCCeEeeeCCCCCHHHH
Confidence            35899999999988888765   1      12268999999999999999999999887   788999999999987766


Q ss_pred             hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633          286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~  353 (550)
                      .+.++|    .++.+       +....++++|||||+.+++.+|..|++++++|  . ++.. |......++.||+||+.
T Consensus       206 ~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~--~-~~~~~~~~~~~~~~rii~~~~~  282 (469)
T PRK10923        206 ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADG--Q-FYRVGGYAPVKVDVRIIAATHQ  282 (469)
T ss_pred             HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcC--c-EEeCCCCCeEEeeEEEEEeCCC
Confidence            777777    23222       22345689999999999999999999999999  6 5443 32222345669999998


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      .......              .+.|+++|++|++ .+.+. .|||.+  +|+..++..++.++...+...   ...++++
T Consensus       283 ~l~~~~~--------------~~~~~~~L~~~l~-~~~i~-~PpLreR~~Di~~l~~~~l~~~~~~~~~~---~~~~~~~  343 (469)
T PRK10923        283 NLEQRVQ--------------EGKFREDLFHRLN-VIRVH-LPPLRERREDIPRLARHFLQVAARELGVE---AKLLHPE  343 (469)
T ss_pred             CHHHHHH--------------cCCchHHHHHHhc-ceeec-CCCcccchhhHHHHHHHHHHHHHHHcCCC---CCCcCHH
Confidence            7654433              4689999999994 34444 237765  899999999998876654322   2468999


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++..|..+.||  | |+|+|+++|++
T Consensus       344 a~~~L~~~~wp--g-Nv~eL~~~i~~  366 (469)
T PRK10923        344 TEAALTRLAWP--G-NVRQLENTCRW  366 (469)
T ss_pred             HHHHHHhCCCC--C-hHHHHHHHHHH
Confidence            99999999997  8 99999999997

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.85  E-value=3.7e-20  Score=186.21  Aligned_cols=203  Identities=15%  Similarity=0.239  Sum_probs=147.2

Q ss_pred             cccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCCCceeEEecCCCC
Q 036633          207 RVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DNDNHLIHFDMGNYT  281 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~~li~id~s~~~  281 (550)
                      .++|++.++++|...+.+...    .+.|+..++.+.+++|+||||||||++|+++|+.++..+ ....+++.++++.+.
T Consensus         7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~   86 (261)
T TIGR02881         7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV   86 (261)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence            389999999887655433211    145666555558999999999999999999999876432 234467777777653


Q ss_pred             chhhhhhHHh----HHHHHHHhCCCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEE
Q 036633          282 ELESIKHFFD----SLAALVKKRPYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIM  349 (550)
Q Consensus       282 ~~~~~s~liG----~lt~al~~~p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~  349 (550)
                           +.++|    .+.+.+.+..++||||||++.+.        .++++.|++.++++  .           .+.++|+
T Consensus        87 -----~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~--~-----------~~~~vil  148 (261)
T TIGR02881        87 -----GEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN--R-----------NEFVLIL  148 (261)
T ss_pred             -----hhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc--C-----------CCEEEEe
Confidence                 33344    33445556667899999999865        56889999999887  5           4456777


Q ss_pred             eCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 036633          350 TSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPS  429 (550)
Q Consensus       350 TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~  429 (550)
                      +++...  +..              ...++|+|.+||+..|.|+   +++.+++..|+...+..       .+   ..++
T Consensus       149 a~~~~~--~~~--------------~~~~~p~L~sRf~~~i~f~---~~~~~el~~Il~~~~~~-------~~---~~l~  199 (261)
T TIGR02881       149 AGYSDE--MDY--------------FLSLNPGLRSRFPISIDFP---DYTVEELMEIAERMVKE-------RE---YKLT  199 (261)
T ss_pred             cCCcch--hHH--------------HHhcChHHHhccceEEEEC---CCCHHHHHHHHHHHHHH-------cC---CccC
Confidence            654321  100              0235799999998889999   99999999999988853       33   3789


Q ss_pred             HHHHHHHHhcC------c-ccCCCcccHHHHHHcc
Q 036633          430 TSALVHIASNA------A-RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       430 ~~a~~~L~~~~------~-~~~GaN~R~L~~~i~~  457 (550)
                      +++.++|++..      . +.+| |+|.++++++.
T Consensus       200 ~~a~~~l~~~~~~~~~~~~~~~g-n~R~~~n~~e~  233 (261)
T TIGR02881       200 EEAKWKLREHLYKVDQLSSREFS-NARYVRNIIEK  233 (261)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCc-hHHHHHHHHHH
Confidence            99999886531      1 4578 99999999998

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=99.83  E-value=5.3e-20  Score=199.89  Aligned_cols=215  Identities=16%  Similarity=0.158  Sum_probs=169.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|.+.++..+...+...         ...+.++++.|++||||+++|++++....+   ...+|+.+||+.+.+...
T Consensus       134 ~~lig~s~~~~~v~~~i~~~---------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~---~~~~~~~~~c~~~~~~~~  201 (463)
T TIGR01818       134 AELIGEAPAMQEVFRAIGRL---------SRSDITVLINGESGTGKELVARALHRHSPR---ANGPFIALNMAAIPKDLI  201 (463)
T ss_pred             cceeecCHHHHHHHHHHHHH---------hCcCCeEEEECCCCCCHHHHHHHHHHhCCC---CCCCeEEEeCCCCCHHHH
Confidence            35899999999988888754         123367899999999999999999999887   788999999999987766


Q ss_pred             hhhHHh----HHHHHH-------HhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633          286 IKHFFD----SLAALV-------KKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG----~lt~al-------~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~  353 (550)
                      .+.++|    .++.+.       ....+++||||||+.+++++|..|++++++|  . ++.. |......++.||+||+.
T Consensus       202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~--~-~~~~~~~~~~~~~~rii~~~~~  278 (463)
T TIGR01818       202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADG--E-FYRVGGRTPIKVDVRIVAATHQ  278 (463)
T ss_pred             HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcC--c-EEECCCCceeeeeeEEEEeCCC
Confidence            777777    333332       2344689999999999999999999999999  6 5443 33322335669999998


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      ..+....              .+.|+++|++|+. .+.+. .|||.  .+|+..++..++..+...+...   ...++++
T Consensus       279 ~l~~~~~--------------~~~f~~~L~~rl~-~~~i~-lPpLr~R~~Di~~l~~~~l~~~~~~~~~~---~~~~~~~  339 (463)
T TIGR01818       279 NLEALVR--------------QGKFREDLFHRLN-VIRIH-LPPLRERREDIPRLARHFLALAARELDVE---PKLLDPE  339 (463)
T ss_pred             CHHHHHH--------------cCCcHHHHHHHhC-cceec-CCCcccchhhHHHHHHHHHHHHHHHhCCC---CCCcCHH
Confidence            7655443              4689999999995 44555 33888  6899999999999877654332   2478999


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++..|..++||  | |+|.|++++++
T Consensus       340 a~~~L~~~~wp--g-NvreL~~~~~~  362 (463)
T TIGR01818       340 ALERLKQLRWP--G-NVRQLENLCRW  362 (463)
T ss_pred             HHHHHHhCCCC--C-hHHHHHHHHHH
Confidence            99999999987  8 99999999997

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PRK15115 response regulator GlrR; Provisional

Probab=99.83  E-value=6.9e-20  Score=198.01  Aligned_cols=280  Identities=17%  Similarity=0.151  Sum_probs=196.5

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|.+.++..+...+...         .....++++.|++|||||.+|+.++....+   ...+|+.+||+.+.+...
T Consensus       134 ~~lig~s~~~~~~~~~~~~~---------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r---~~~~f~~i~c~~~~~~~~  201 (444)
T PRK15115        134 EAIVTRSPLMLRLLEQARMV---------AQSDVSVLINGQSGTGKEILAQAIHNASPR---ASKPFIAINCGALPEQLL  201 (444)
T ss_pred             hcccccCHHHHHHHHHHHhh---------ccCCCeEEEEcCCcchHHHHHHHHHHhcCC---CCCCeEEEeCCCCCHHHH
Confidence            35789998888877777654         112257899999999999999999999887   778999999999987766


Q ss_pred             hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633          286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~  353 (550)
                      .+.++|    .++++       +....+++||||||+.+++++|..|++++++|  . +... +....-.++.||+||+.
T Consensus       202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~--~-~~~~g~~~~~~~~~rii~~~~~  278 (444)
T PRK15115        202 ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQER--K-VRPLGSNRDIDIDVRIISATHR  278 (444)
T ss_pred             HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhC--C-EEeCCCCceeeeeEEEEEeCCC
Confidence            677777    22222       22344589999999999999999999999999  5 4322 22222235669999997


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      .......              .+.|++++++|++ .+.+. .|||.+  +|+..++..++.++.......   ...++++
T Consensus       279 ~l~~~~~--------------~~~f~~~l~~~l~-~~~i~-lPpLr~R~eDi~~l~~~~l~~~~~~~~~~---~~~~~~~  339 (444)
T PRK15115        279 DLPKAMA--------------RGEFREDLYYRLN-VVSLK-IPALAERTEDIPLLANHLLRQAAERHKPF---VRAFSTD  339 (444)
T ss_pred             CHHHHHH--------------cCCccHHHHHhhc-eeeec-CCChHhccccHHHHHHHHHHHHHHHhCCC---CCCcCHH
Confidence            6544333              4689999999994 55555 338865  899999999998876654322   2368999


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcccccccccCCCC
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTEGLS  511 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~~~~~~~ls  511 (550)
                      +++.|..+.||  | |+|.|+++|++ .+.   +.    ++..+  +...   ++....  ... ..    .+.....+.
T Consensus       340 a~~~L~~~~Wp--g-NvreL~~~i~~-~~~---~~----~~~~i--~~~~---l~~~~~--~~~-~~----~~~~~~~~~  396 (444)
T PRK15115        340 AMKRLMTASWP--G-NVRQLVNVIEQ-CVA---LT----SSPVI--SDAL---VEQALE--GEN-TA----LPTFVEARN  396 (444)
T ss_pred             HHHHHHhCCCC--C-hHHHHHHHHHH-HHH---hC----CCCcc--Chhh---hhhhhc--ccc-cc----cccHHHHHH
Confidence            99999999987  8 99999999997 221   11    12222  2221   111110  000 00    000001122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633          512 LEELKKYMDSLEALRNNVAIKLEEMMMRRAC  542 (550)
Q Consensus       512 l~eleq~~~ale~l~~nl~~~a~~l~~~~~~  542 (550)
                      ..|...+..+|++..+|+...|+.|.|++.+
T Consensus       397 ~~E~~~i~~al~~~~gn~~~aA~~Lgisr~t  427 (444)
T PRK15115        397 QFELNYLRKLLQITKGNVTHAARMAGRNRTE  427 (444)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHhCCCHHH
Confidence            3466678899999999999999999998754

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=99.83  E-value=2.4e-19  Score=194.43  Aligned_cols=287  Identities=17%  Similarity=0.153  Sum_probs=199.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|++.++..+...+...   .      ....++++.|++||||+++|++++....+   ...+|+.+||+.+.+...
T Consensus       143 ~~ii~~S~~~~~~~~~~~~~---a------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---~~~~~~~i~c~~~~~~~~  210 (457)
T PRK11361        143 GHILTNSPAMMDICKDTAKI---A------LSQASVLISGESGTGKELIARAIHYNSRR---AKGPFIKVNCAALPESLL  210 (457)
T ss_pred             cceecccHHHhHHHHHHHHH---c------CCCcEEEEEcCCCccHHHHHHHHHHhCCC---CCCCeEEEECCCCCHHHH
Confidence            35899999999988887765   1      12268999999999999999999998877   778999999999987776


Q ss_pred             hhhHHh----HHHH-------HHHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-CCeEeecCCeEEEEeCCC
Q 036633          286 IKHFFD----SLAA-------LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-GIAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG----~lt~-------al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~g~~vd~~~~iiI~TsN~  353 (550)
                      .+.++|    .+++       .+....+++||||||+.+++.+|..|+++++++  . +.. ++...-..++.||+|||.
T Consensus       211 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~--~-~~~~~~~~~~~~~~rii~~t~~  287 (457)
T PRK11361        211 ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQER--E-FERIGGHQTIKVDIRIIAATNR  287 (457)
T ss_pred             HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcC--c-EEeCCCCceeeeceEEEEeCCC
Confidence            777777    2222       223345689999999999999999999999998  5 433 222222235569999998


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      .......              .+.|++++++|+. .+.+. .|||.  .+|+..++..++.++..+....   ...++++
T Consensus       288 ~l~~~~~--------------~g~~~~~l~~~l~-~~~i~-~ppLreR~~di~~l~~~~l~~~~~~~~~~---~~~~~~~  348 (457)
T PRK11361        288 DLQAMVK--------------EGTFREDLFYRLN-VIHLI-LPPLRDRREDISLLANHFLQKFSSENQRD---IIDIDPM  348 (457)
T ss_pred             CHHHHHH--------------cCCchHHHHHHhc-cceec-CCChhhchhhHHHHHHHHHHHHHHHcCCC---CCCcCHH
Confidence            7655443              4789999999994 44444 33776  4899999999999887654332   3578999


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCC-C-CCCcccccccc-cC
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGG-G-GGGVEYWWEES-TE  508 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~d-k-~g~~~y~~~~~-~~  508 (550)
                      +++.|..+.||  | |+|.|+++|++ .+..   .    +++.  |+..   +++........ . .....-.-+.+ ..
T Consensus       349 a~~~L~~~~wp--g-Nv~eL~~~~~~-~~~~---~----~~~~--i~~~---~l~~~~~~~~~~~~~~~~~~~~~~~l~~  412 (457)
T PRK11361        349 AMSLLTAWSWP--G-NIRELSNVIER-AVVM---N----SGPI--IFSE---DLPPQIRQPVCNAGEVKTAPVGERNLKE  412 (457)
T ss_pred             HHHHHHcCCCC--C-cHHHHHHHHHH-HHHh---C----CCCc--ccHH---HChHhhhcccccccccccccccccchhh
Confidence            99999999887  8 99999999997 2211   1    1222  2221   22111100000 0 00000000000 01


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633          509 GLSLEELKKYMDSLEALRNNVAIKLEEMMMRRAC  542 (550)
Q Consensus       509 ~lsl~eleq~~~ale~l~~nl~~~a~~l~~~~~~  542 (550)
                      .+...|.+.+..+|+...+|....|+.|.|.+.+
T Consensus       413 ~~~~~E~~~i~~al~~~~gn~~~aA~~LGisr~t  446 (457)
T PRK11361        413 EIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRA  446 (457)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHH
Confidence            1234566678899999999999999999998754

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=99.82  E-value=4.4e-20  Score=173.04  Aligned_cols=154  Identities=20%  Similarity=0.244  Sum_probs=118.3

Q ss_pred             ccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhh
Q 036633          208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK  287 (550)
Q Consensus       208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s  287 (550)
                      +||.+.++..+.+.+++.         ...|.+++++|++||||+.+|++|++...+   .+.||+.+||+.+.+....+
T Consensus         1 liG~s~~m~~~~~~~~~~---------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r---~~~pfi~vnc~~~~~~~~e~   68 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRA---------ASSDLPVLITGETGTGKELLARAIHNNSPR---KNGPFISVNCAALPEELLES   68 (168)
T ss_dssp             SS--SHHHHHHHHHHHHH---------TTSTS-EEEECSTTSSHHHHHHHHHHCSTT---TTS-EEEEETTTS-HHHHHH
T ss_pred             CEeCCHHHHHHHHHHHHH---------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhc---ccCCeEEEehhhhhcchhhh
Confidence            589999999999999976         124479999999999999999999999888   88899999999999888888


Q ss_pred             hHHhH-----------HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCCh
Q 036633          288 HFFDS-----------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKD  355 (550)
Q Consensus       288 ~liG~-----------lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~  355 (550)
                      .|||.           -...+....+++||||||+.+++++|..|++++++|  . ++.. +...-..++.||+|||.+.
T Consensus        69 ~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~--~-~~~~g~~~~~~~~~RiI~st~~~l  145 (168)
T PF00158_consen   69 ELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEG--K-FTRLGSDKPVPVDVRIIASTSKDL  145 (168)
T ss_dssp             HHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHS--E-EECCTSSSEEE--EEEEEEESS-H
T ss_pred             hhhccccccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhc--h-hccccccccccccceEEeecCcCH
Confidence            89981           125667778899999999999999999999999999  5 4433 2222223566999999877


Q ss_pred             HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeE
Q 036633          356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV  391 (550)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~  391 (550)
                      .....              .+.|+++|++|+. +++
T Consensus       146 ~~~v~--------------~g~fr~dLy~rL~-~~~  166 (168)
T PF00158_consen  146 EELVE--------------QGRFREDLYYRLN-VFT  166 (168)
T ss_dssp             HHHHH--------------TTSS-HHHHHHHT-TEE
T ss_pred             HHHHH--------------cCCChHHHHHHhc-eEe
Confidence            66554              5799999999994 444

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=2.3e-19  Score=183.15  Aligned_cols=253  Identities=21%  Similarity=0.227  Sum_probs=177.4

Q ss_pred             HHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC------------------------------------cCC---
Q 036633          197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS------------------------------------RRQ---  237 (550)
Q Consensus       197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~------------------------------------~~~---  237 (550)
                      -+.+.+.|++.||||+.|++.++-+++.+   +..+..                                    .++   
T Consensus       136 PkeI~~~Ldk~VVGQe~AKKvLsVAVYnH---YkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~  212 (564)
T KOG0745|consen  136 PKEICEYLDKFVVGQEKAKKVLSVAVYNH---YKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIA  212 (564)
T ss_pred             hHHHHHHhhhheechhhhhheeeehhhHH---HHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhc
Confidence            46788999999999999998777666433   111110                                    000   


Q ss_pred             ------------C-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-----HHHHH---
Q 036633          238 ------------L-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-----SLAAL---  296 (550)
Q Consensus       238 ------------p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-----~lt~a---  296 (550)
                                  - .++|++||||+|||.||+.||+.+..      ||.-.||..++...++..-+-     .|++|   
T Consensus       213 ~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldV------PfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n  286 (564)
T KOG0745|consen  213 KALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDV------PFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYN  286 (564)
T ss_pred             ccccccccceeeecccEEEECCCCCchhHHHHHHHHHhCC------CeEEecccchhhcccccccHHHHHHHHHHHccCC
Confidence                        0 46899999999999999999999988      999999999987766433222     23332   


Q ss_pred             HHhCCCCeEEeccccccC--------------HHHHHHHHHhhhhcccccc--------ccC-CeEeecCCeEEEEeCCC
Q 036633          297 VKKRPYSVVLFDKIEKAN--------------SSILNLLLKILKTDFNRKA--------TRG-IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       297 l~~~p~~VlllDEIeka~--------------~~v~~~Ll~~ld~g~~~~l--------~d~-g~~vd~~~~iiI~TsN~  353 (550)
                      +.+...+||||||+||+.              ..||..||+++|.-.+. +        ..+ ...+|.+|.+||+..-+
T Consensus       287 VekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVn-VpeK~~~~~~rgd~vqiDTtnILFiasGAF  365 (564)
T KOG0745|consen  287 VEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVN-VPEKGSRRKPRGDTVQIDTTNILFIASGAF  365 (564)
T ss_pred             HHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEc-ccCCCCCCCCCCCeEEEeccceEEEecccc
Confidence            344566899999999875              36999999999754222 2        111 34689999999886432


Q ss_pred             -ChHHHHHh-hh-------hh--------------------hHhhHHHHhc------cCCChhhhhhccceeEecCCCCC
Q 036633          354 -KDEQVYEV-ML-------TA--------------------TYGRVNEVTG------SLFKPSLLKLLDKLVVIDLAVPL  398 (550)
Q Consensus       354 -g~~~~~~~-~~-------~~--------------------~~~~~~~~l~------~~f~p~ll~Rid~ii~f~~~~pL  398 (550)
                       +.+.+... ..       .+                    .++.+.+.+.      -.+-|||++|+..+++|.   +|
T Consensus       366 ~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh---~L  442 (564)
T KOG0745|consen  366 VGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLH---SL  442 (564)
T ss_pred             cchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeecc---cc
Confidence             33333211 10       00                    0122222222      234799999999999999   99


Q ss_pred             CHHHHHHHHHHHHHHHHHH----hccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcchhhHHHHHh
Q 036633          399 LDTTRLLLREWACEETKRR----NNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQRPSADHVID  466 (550)
Q Consensus       399 ~~e~i~~I~~~~l~~~~~~----l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~~~la~~~l~  466 (550)
                      +++++.+++..--+.+..+    +.-.++ .|.|+++|++.|+..+. .+.||  |+|+.++++ .|-+..+.
T Consensus       443 ~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV-~L~fTe~Al~~IAq~Al~r~TGA--RgLRsIlE~-~Lleamfe  511 (564)
T KOG0745|consen  443 DEDQLVRVLTEPKNALGKQYKKLFGMDNV-ELHFTEKALEAIAQLALKRKTGA--RGLRSILES-LLLEAMFE  511 (564)
T ss_pred             CHHHHHHHHhcchhhHHHHHHHHhccCCe-eEEecHHHHHHHHHHHHhhccch--HHHHHHHHH-HHhhhccc
Confidence            9999999986544443333    344567 99999999999999888 88899  999999996 55554443

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=99.80  E-value=3.9e-19  Score=178.00  Aligned_cols=238  Identities=13%  Similarity=0.120  Sum_probs=157.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      +.++||++++.. ...++..       ...++-.+++||||||||||++|+.|+.....   ....|+.+....-    .
T Consensus       138 ~dyvGQ~hlv~q-~gllrs~-------ieq~~ipSmIlWGppG~GKTtlArlia~tsk~---~SyrfvelSAt~a----~  202 (554)
T KOG2028|consen  138 DDYVGQSHLVGQ-DGLLRSL-------IEQNRIPSMILWGPPGTGKTTLARLIASTSKK---HSYRFVELSATNA----K  202 (554)
T ss_pred             HHhcchhhhcCc-chHHHHH-------HHcCCCCceEEecCCCCchHHHHHHHHhhcCC---CceEEEEEecccc----c
Confidence            457788888744 1122111       11123369999999999999999999988755   3333555443222    1


Q ss_pred             hhhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633          286 IKHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV  361 (550)
Q Consensus       286 ~s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~  361 (550)
                      +..+-+.+..+-+    .+...|+|+|||++++...|+.||..+++|  . +           ++|-+||.-++      
T Consensus       203 t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G--~-I-----------~lIGATTENPS------  262 (554)
T KOG2028|consen  203 TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENG--D-I-----------TLIGATTENPS------  262 (554)
T ss_pred             hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccC--c-e-----------EEEecccCCCc------
Confidence            2222232222211    133479999999999999999999999999  5 3           12334443221      


Q ss_pred             hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc-CCCc--cccCCHHHHHHHHh
Q 036633          362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND-SKAV--IVCPSTSALVHIAS  438 (550)
Q Consensus       362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~-~~~~--~l~~~~~a~~~L~~  438 (550)
                                    =.++.+|++|| .++++.   +|..+++..|+.+.+..+.+.-+. .++.  .+.+++.++++|+.
T Consensus       263 --------------Fqln~aLlSRC-~VfvLe---kL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~  324 (554)
T KOG2028|consen  263 --------------FQLNAALLSRC-RVFVLE---KLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAY  324 (554)
T ss_pred             --------------cchhHHHHhcc-ceeEec---cCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHH
Confidence                          12367899999 899999   999999999999988755533211 1221  34689999999998


Q ss_pred             cCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCccccc
Q 036633          439 NAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWW  503 (550)
Q Consensus       439 ~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~  503 (550)
                      .+-  .++  |.--+.++- .++  +...+-.....+.++.+..++..+..++.||+.|++||+.
T Consensus       325 lsd--GDa--R~aLN~Lem-s~~--m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYnt  382 (554)
T KOG2028|consen  325 LSD--GDA--RAALNALEM-SLS--MFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNT  382 (554)
T ss_pred             hcC--chH--HHHHHHHHH-HHH--HHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHH
Confidence            654  234  644455553 222  2222233336678899999999999999999999999964

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=99.80  E-value=1.4e-18  Score=187.44  Aligned_cols=281  Identities=15%  Similarity=0.159  Sum_probs=194.2

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI  286 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~  286 (550)
                      .++|.+..+..+...+...         ......++++|++||||+.+|++++....+   ...+|+.+||+.+.+....
T Consensus       140 ~lig~s~~~~~~~~~i~~~---------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~---~~~~~i~~~c~~~~~~~~~  207 (441)
T PRK10365        140 GMVGKSPAMQHLLSEIALV---------APSEATVLIHGDSGTGKELVARAIHASSAR---SEKPLVTLNCAALNESLLE  207 (441)
T ss_pred             ceEecCHHHHHHHHHHhhc---------cCCCCeEEEEecCCCCHHHHHHHHHHcCCC---CCCCeeeeeCCCCCHHHHH
Confidence            4788888888877776544         112267888999999999999999999887   7789999999998876666


Q ss_pred             hhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-CCeEeecCCeEEEEeCCCC
Q 036633          287 KHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-GIAAFDLTNTLIIMTSDLK  354 (550)
Q Consensus       287 s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~g~~vd~~~~iiI~TsN~g  354 (550)
                      +.++|    .++++       +....+++||||||+.+++.+|..|++++++|  . +.. ++...--.++.+|+||+.+
T Consensus       208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~--~-~~~~~~~~~~~~~~rii~~t~~~  284 (441)
T PRK10365        208 SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQER--E-VQRVGSNQTISVDVRLIAATHRD  284 (441)
T ss_pred             HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccC--c-EEeCCCCceeeeceEEEEeCCCC
Confidence            77777    23222       23344689999999999999999999999999  5 332 2211112234588888876


Q ss_pred             hHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633          355 DEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTSA  432 (550)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a  432 (550)
                      ......              ...|+++|+.|+. .+.+. .|||.+  +|+..++..++.++..+....   ...+++++
T Consensus       285 ~~~~~~--------------~~~~~~~l~~~l~-~~~i~-~ppLreR~~Di~~l~~~~l~~~~~~~~~~---~~~~~~~a  345 (441)
T PRK10365        285 LAAEVN--------------AGRFRQDLYYRLN-VVAIE-VPSLRQRREDIPLLAGHFLQRFAERNRKA---VKGFTPQA  345 (441)
T ss_pred             HHHHHH--------------cCCchHHHHHHhc-cceec-CCChhhcchhHHHHHHHHHHHHHHHhCCC---CCCcCHHH
Confidence            543322              4689999999994 45554 337765  799999999999877665333   34689999


Q ss_pred             HHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcccccccccCCCCH
Q 036633          433 LVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTEGLSL  512 (550)
Q Consensus       433 ~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~~~~~~~lsl  512 (550)
                      ++.|..+.||  | |+|.|++++++ .+.  ..     .+..  |+...   ++..........     .-......+..
T Consensus       346 ~~~L~~~~wp--g-N~reL~~~~~~-~~~--~~-----~~~~--i~~~~---l~~~~~~~~~~~-----~~~~~~~~l~~  404 (441)
T PRK10365        346 MDLLIHYDWP--G-NIRELENAVER-AVV--LL-----TGEY--ISERE---LPLAIASTPIPL-----GQSQDIQPLVE  404 (441)
T ss_pred             HHHHHhCCCC--C-HHHHHHHHHHH-HHH--hC-----CCCc--cchHh---CchhhcccccCc-----ccccchhhHHH
Confidence            9999999887  8 99999999997 211  11     1222  22221   111100000000     00000112333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633          513 EELKKYMDSLEALRNNVAIKLEEMMMRRAC  542 (550)
Q Consensus       513 ~eleq~~~ale~l~~nl~~~a~~l~~~~~~  542 (550)
                      .|...+..+|++..+|....|+.|.+.+.+
T Consensus       405 ~e~~~i~~~l~~~~gn~~~aa~~Lgisr~t  434 (441)
T PRK10365        405 VEKEVILAALEKTGGNKTEAARQLGITRKT  434 (441)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhCCCHHH
Confidence            466678899999999999999999998754

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.80  E-value=9e-19  Score=192.28  Aligned_cols=197  Identities=21%  Similarity=0.243  Sum_probs=141.7

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCC--C
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGN--Y  280 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~--~  280 (550)
                      .++||+++++.+..++...           .|.+++|+||||||||++|+++++.+..+.    ..+.+|+.+||+.  +
T Consensus        66 ~iiGqs~~i~~l~~al~~~-----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~  134 (531)
T TIGR02902        66 EIIGQEEGIKALKAALCGP-----------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARF  134 (531)
T ss_pred             HeeCcHHHHHHHHHHHhCC-----------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccC
Confidence            5899999999887664322           456889999999999999999998653210    0246899999974  2


Q ss_pred             CchhhhhhHHhH--------------------HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-----
Q 036633          281 TELESIKHFFDS--------------------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-----  335 (550)
Q Consensus       281 ~~~~~~s~liG~--------------------lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-----  335 (550)
                      .+......++|.                    -.+.+.+..+++||||||+.+++.+|+.|+++++++.+. +..     
T Consensus       135 ~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~-~~~~~~~~  213 (531)
T TIGR02902       135 DERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVF-LDSAYYNS  213 (531)
T ss_pred             CccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeee-eccccccc
Confidence            222222223331                    112344556789999999999999999999999988322 210     


Q ss_pred             -------------C-CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHH
Q 036633          336 -------------G-IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDT  401 (550)
Q Consensus       336 -------------~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e  401 (550)
                                   . |...||   .+|++|+...                    ..++|++.+|| ..|.|.   ||+.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~d~---rlI~ATt~~p--------------------~~L~paLrsR~-~~I~f~---pL~~e  266 (531)
T TIGR02902       214 ENPNIPSHIHDIFQNGLPADF---RLIGATTRNP--------------------EEIPPALRSRC-VEIFFR---PLLDE  266 (531)
T ss_pred             cCcccccchhhhcccCcccce---EEEEEecCCc--------------------ccCChHHhhhh-heeeCC---CCCHH
Confidence                         0 222333   3555554432                    35689999999 688999   99999


Q ss_pred             HHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          402 TRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       402 ~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++..|++..+.+       .+   +.+++++++.|..+++     |+|.+.+.++.
T Consensus       267 ei~~Il~~~a~k-------~~---i~is~~al~~I~~y~~-----n~Rel~nll~~  307 (531)
T TIGR02902       267 EIKEIAKNAAEK-------IG---INLEKHALELIVKYAS-----NGREAVNIVQL  307 (531)
T ss_pred             HHHHHHHHHHHH-------cC---CCcCHHHHHHHHHhhh-----hHHHHHHHHHH
Confidence            999999987754       33   4789999999988765     77999999986

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.79  E-value=2.6e-18  Score=182.90  Aligned_cols=191  Identities=20%  Similarity=0.271  Sum_probs=137.0

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------  266 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------  266 (550)
                      -..|+||++++..+..++...   +       -|..+||+||+|||||++|+++|+.++...                  
T Consensus        17 f~dvVGQe~iv~~L~~~i~~~---r-------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~   86 (484)
T PRK14956         17 FRDVIHQDLAIGALQNALKSG---K-------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITK   86 (484)
T ss_pred             HHHHhChHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHc
Confidence            356999999999988888865   1       236799999999999999999999997621                  


Q ss_pred             CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          267 DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       267 ~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                      .....++.+|.+.-.....+..++..+...-....+.|++|||+|.++.+.++.||+.+++.  .           .+++
T Consensus        87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP--p-----------~~vi  153 (484)
T PRK14956         87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP--P-----------AHIV  153 (484)
T ss_pred             cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC--C-----------CceE
Confidence            00112444443221111112222222111112245679999999999999999999999986  4           5677


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV  426 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l  426 (550)
                      ||++||..                     ..+.|.+++|| +++.|.   +++.+++...+...+..       .|+   
T Consensus       154 FILaTte~---------------------~kI~~TI~SRC-q~~~f~---~ls~~~i~~~L~~i~~~-------Egi---  198 (484)
T PRK14956        154 FILATTEF---------------------HKIPETILSRC-QDFIFK---KVPLSVLQDYSEKLCKI-------ENV---  198 (484)
T ss_pred             EEeecCCh---------------------hhccHHHHhhh-heeeec---CCCHHHHHHHHHHHHHH-------cCC---
Confidence            88888752                     35678899999 899999   99999998888776643       444   


Q ss_pred             cCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          427 CPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       427 ~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .++++++..|+..+-   | +.|..-+++++
T Consensus       199 ~~e~eAL~~Ia~~S~---G-d~RdAL~lLeq  225 (484)
T PRK14956        199 QYDQEGLFWIAKKGD---G-SVRDMLSFMEQ  225 (484)
T ss_pred             CCCHHHHHHHHHHcC---C-hHHHHHHHHHH
Confidence            889999999998654   5 55766666664

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=99.79  E-value=1e-18  Score=187.56  Aligned_cols=263  Identities=18%  Similarity=0.196  Sum_probs=196.2

Q ss_pred             cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhh
Q 036633          209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH  288 (550)
Q Consensus       209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~  288 (550)
                      .|++..+......+.+.   .      ....++++.|.|||||-.+|++|++....    +.||+.+||..+.+.+..+.
T Consensus       316 ~~~d~s~a~l~rk~~rv---~------~~~~pvll~GEtGtGKe~laraiH~~s~~----~gpfvAvNCaAip~~liesE  382 (606)
T COG3284         316 PLLDPSRATLLRKAERV---A------ATDLPVLLQGETGTGKEVLARAIHQNSEA----AGPFVAVNCAAIPEALIESE  382 (606)
T ss_pred             cccCHHHHHHHHHHHHH---h------hcCCCeEecCCcchhHHHHHHHHHhcccc----cCCeEEEEeccchHHhhhHH
Confidence            46677777766666655   1      11268999999999999999999998753    66999999999999999999


Q ss_pred             HHh----HHHHHHHh--------CCCCeEEeccccccCHHHHHHHHHhhhhccccccccC---CeEeecCCeEEEEeCCC
Q 036633          289 FFD----SLAALVKK--------RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG---IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       289 liG----~lt~al~~--------~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~---g~~vd~~~~iiI~TsN~  353 (550)
                      |||    .+|.+.++        .+++.+|||||+.++-+.|..||++|++|  . ++--   ..+||++   ||.+|+.
T Consensus       383 LFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~--~-v~p~g~~~~~vdir---vi~ath~  456 (606)
T COG3284         383 LFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEG--V-VTPLGGTRIKVDIR---VIAATHR  456 (606)
T ss_pred             HhccCccccccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhC--c-eeccCCcceeEEEE---EEeccCc
Confidence            999    67766554        34679999999999999999999999999  5 4432   4567877   9999999


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH-HHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD-TTRLLLREWACEETKRRNNDSKAVIVCPSTSA  432 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~-e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a  432 (550)
                      +...+..              ...|+.+|++|+ ..+++.+| ||.+ .|-...+.+.+.+      ..+. .+.+++++
T Consensus       457 dl~~lv~--------------~g~fredLyyrL-~~~~i~lP-~lr~R~d~~~~l~~~~~~------~~~~-~~~l~~~~  513 (606)
T COG3284         457 DLAQLVE--------------QGRFREDLYYRL-NAFVITLP-PLRERSDRIPLLDRILKR------ENDW-RLQLDDDA  513 (606)
T ss_pred             CHHHHHH--------------cCCchHHHHHHh-cCeeeccC-chhcccccHHHHHHHHHH------ccCC-CccCCHHH
Confidence            8877766              579999999999 56666633 7765 4444444444433      1234 67999999


Q ss_pred             HHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcccccccccCCCCH
Q 036633          433 LVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTEGLSL  512 (550)
Q Consensus       433 ~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~~~~~~~lsl  512 (550)
                      +..|..+.||  | |+|+|.++|+.  ++  ++    .+++.+.+     .+++....             +.....+..
T Consensus       514 ~~~l~~~~WP--G-Nirel~~v~~~--~~--~l----~~~g~~~~-----~dlp~~l~-------------~~~~~~~~~  564 (606)
T COG3284         514 LARLLAYRWP--G-NIRELDNVIER--LA--AL----SDGGRIRV-----SDLPPELL-------------EEQATPRED  564 (606)
T ss_pred             HHHHHhCCCC--C-cHHHHHHHHHH--HH--Hc----CCCCeeEc-----ccCCHHHH-------------hhhcccccc
Confidence            9999998887  8 99999999996  11  11    13444433     23332221             001111444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 036633          513 EELKKYMDSLEALRNNVAIKLEEMMMRRAC  542 (550)
Q Consensus       513 ~eleq~~~ale~l~~nl~~~a~~l~~~~~~  542 (550)
                      .+-..+..+++.-++|+...|+.|.+.+.+
T Consensus       565 ~~~~~l~~al~~~~~~is~aa~~lgi~R~T  594 (606)
T COG3284         565 IEKAALLAALQATNGNISEAARLLGISRST  594 (606)
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence            577788899999999999999999988753

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.78  E-value=3.7e-18  Score=191.97  Aligned_cols=230  Identities=16%  Similarity=0.193  Sum_probs=159.7

Q ss_pred             CcccCcHHHHHH---HHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633          206 KRVFGQNDAIDV---IFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE  282 (550)
Q Consensus       206 ~~viGQ~~ai~~---i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~  282 (550)
                      +.++||++.+..   +...+...           +..+++|+||||||||++|+++|+.+..      +|+.+|++...-
T Consensus        28 dd~vGQe~ii~~~~~L~~~i~~~-----------~~~slLL~GPpGtGKTTLA~aIA~~~~~------~f~~lna~~~~i   90 (725)
T PRK13341         28 EEFVGQDHILGEGRLLRRAIKAD-----------RVGSLILYGPPGVGKTTLARIIANHTRA------HFSSLNAVLAGV   90 (725)
T ss_pred             HHhcCcHHHhhhhHHHHHHHhcC-----------CCceEEEECCCCCCHHHHHHHHHHHhcC------cceeehhhhhhh
Confidence            458899999853   33333322           3468999999999999999999998765      788888764211


Q ss_pred             hhhhhhHHhHHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633          283 LESIKHFFDSLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV  361 (550)
Q Consensus       283 ~~~~s~liG~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~  361 (550)
                       ..+...+......+.. ..+.+||||||+.++...|+.|++.+++|  .             .++|.+|+....     
T Consensus        91 -~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g--~-------------IiLI~aTTenp~-----  149 (725)
T PRK13341         91 -KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENG--T-------------ITLIGATTENPY-----  149 (725)
T ss_pred             -HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCc--e-------------EEEEEecCCChH-----
Confidence             1111222222222222 24569999999999999999999999988  5             224444432210     


Q ss_pred             hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc
Q 036633          362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA  441 (550)
Q Consensus       362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~  441 (550)
                                    ..+.+.+++|+ .++.|.   ||+.+++..++...+......+...   .+.++++++++|+.++-
T Consensus       150 --------------~~l~~aL~SR~-~v~~l~---pLs~edi~~IL~~~l~~~~~~~g~~---~v~I~deaL~~La~~s~  208 (725)
T PRK13341        150 --------------FEVNKALVSRS-RLFRLK---SLSDEDLHQLLKRALQDKERGYGDR---KVDLEPEAEKHLVDVAN  208 (725)
T ss_pred             --------------hhhhhHhhccc-cceecC---CCCHHHHHHHHHHHHHHHHhhcCCc---ccCCCHHHHHHHHHhCC
Confidence                          12467899998 689999   9999999999999998655544344   34899999999998652


Q ss_pred             ccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCccccc
Q 036633          442 RKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWW  503 (550)
Q Consensus       442 ~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~  503 (550)
                         | |+|.+.+.++. .+.    .......+.+.++.+..+.......+.+|+.|+.||+.
T Consensus       209 ---G-D~R~lln~Le~-a~~----~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~  261 (725)
T PRK13341        209 ---G-DARSLLNALEL-AVE----STPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDT  261 (725)
T ss_pred             ---C-CHHHHHHHHHH-HHH----hcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHH
Confidence               7 88999999985 211    11111223455777777777777777899999988864

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.77  E-value=7.6e-18  Score=162.25  Aligned_cols=203  Identities=20%  Similarity=0.235  Sum_probs=141.4

Q ss_pred             hcCcccCcHHHHHHHHHHHhcchhhhcCCCCc-----CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSR-----RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~-----~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      --+.||||++|+.+. +.+...      +.+|     -.|.++||+||||||||.+|+++|.....      ||+.++..
T Consensus       119 t~ddViGqEeAK~kc-rli~~y------LenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv------p~l~vkat  185 (368)
T COG1223         119 TLDDVIGQEEAKRKC-RLIMEY------LENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV------PLLLVKAT  185 (368)
T ss_pred             cHhhhhchHHHHHHH-HHHHHH------hhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC------ceEEechH
Confidence            346799999999763 333222      1222     35689999999999999999999998766      99999966


Q ss_pred             CCCchhh--hhhHHhHHHHHHHhCCCCeEEeccccccC------------HHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633          279 NYTELES--IKHFFDSLAALVKKRPYSVVLFDKIEKAN------------SSILNLLLKILKTDFNRKATRGIAAFDLTN  344 (550)
Q Consensus       279 ~~~~~~~--~s~liG~lt~al~~~p~~VlllDEIeka~------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~  344 (550)
                      ++...|-  -++-|-.|.+..++..-||+||||+|...            .++.|+||.-|| |    +..+      ..
T Consensus       186 ~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD-g----i~en------eG  254 (368)
T COG1223         186 ELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD-G----IKEN------EG  254 (368)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc-C----cccC------Cc
Confidence            5533221  12222255555555445999999998654            357889998886 3    2222      23


Q ss_pred             eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633          345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV  424 (550)
Q Consensus       345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~  424 (550)
                      ++.|++||..                     ..++|++.||+.+-|.|.   -.+.++...|++.++..       .-+ 
T Consensus       255 VvtIaaTN~p---------------------~~LD~aiRsRFEeEIEF~---LP~~eEr~~ile~y~k~-------~Pl-  302 (368)
T COG1223         255 VVTIAATNRP---------------------ELLDPAIRSRFEEEIEFK---LPNDEERLEILEYYAKK-------FPL-  302 (368)
T ss_pred             eEEEeecCCh---------------------hhcCHHHHhhhhheeeee---CCChHHHHHHHHHHHHh-------CCC-
Confidence            5678888864                     467899999999999999   77999999999988854       322 


Q ss_pred             cccCCHHHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhh
Q 036633          425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKF  468 (550)
Q Consensus       425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~  468 (550)
                      .+..+   .++++...-   |.+||+++.-+-+..|-.+|..+.
T Consensus       303 pv~~~---~~~~~~~t~---g~SgRdikekvlK~aLh~Ai~ed~  340 (368)
T COG1223         303 PVDAD---LRYLAAKTK---GMSGRDIKEKVLKTALHRAIAEDR  340 (368)
T ss_pred             ccccC---HHHHHHHhC---CCCchhHHHHHHHHHHHHHHHhch
Confidence            33444   556665332   446698876665567777777654

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=99.77  E-value=1.2e-17  Score=164.30  Aligned_cols=227  Identities=18%  Similarity=0.270  Sum_probs=164.4

Q ss_pred             HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE
Q 036633          195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH  274 (550)
Q Consensus       195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~  274 (550)
                      .++..|+..|...++||.-|++.|+.+++..   ... ..|.+|.++-|+|+|||||.++++.||+.++..| ..++++.
T Consensus        71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~---~~n-~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G-l~S~~V~  145 (344)
T KOG2170|consen   71 NDLDGLEKDLARALFGQHLAKQLVVNALKSH---WAN-PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG-LRSPFVH  145 (344)
T ss_pred             ccchHHHHHHHHHhhchHHHHHHHHHHHHHH---hcC-CCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcc-ccchhHH
Confidence            4578899999999999999999999999876   332 3478899999999999999999999999999854 2335544


Q ss_pred             EecC--CCCchhhhhh----HHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633          275 FDMG--NYTELESIKH----FFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLII  348 (550)
Q Consensus       275 id~s--~~~~~~~~s~----liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI  348 (550)
                      .=.+  .|+.+..+..    |-.++.+.++.++.++++|||+||+||.+++.|-..+|-.  . .   ..-+||+++|+|
T Consensus       146 ~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyy--p-~---v~gv~frkaIFI  219 (344)
T KOG2170|consen  146 HFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYY--P-Q---VSGVDFRKAIFI  219 (344)
T ss_pred             HhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccc--c-c---cccccccceEEE
Confidence            3222  2333333322    2225666677899999999999999999999999999843  2 2   234799999999


Q ss_pred             EeCCCChHHHHHhhhhh---------h-HhhHHHHh-ccCCCh--------hh--hhhccceeEecCCCCCCHHHHHHHH
Q 036633          349 MTSDLKDEQVYEVMLTA---------T-YGRVNEVT-GSLFKP--------SL--LKLLDKLVVIDLAVPLLDTTRLLLR  407 (550)
Q Consensus       349 ~TsN~g~~~~~~~~~~~---------~-~~~~~~~l-~~~f~p--------~l--l~Rid~ii~f~~~~pL~~e~i~~I~  407 (550)
                      +-||.|...|.+...+.         . -......+ ...|++        .+  .++||.+|+|.   ||++.++..++
T Consensus       220 fLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFL---PLek~hV~~C~  296 (344)
T KOG2170|consen  220 FLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFL---PLEKRHVRSCI  296 (344)
T ss_pred             EEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcC---cccHHHHHHHH
Confidence            99999999888765321         0 01111111 112221        12  27889999999   99999999999


Q ss_pred             HHHHHHHHHHhccCCCccccCCHHHHHHHHhc-Cc-ccCC
Q 036633          408 EWACEETKRRNNDSKAVIVCPSTSALVHIASN-AA-RKYG  445 (550)
Q Consensus       408 ~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~-~~-~~~G  445 (550)
                      +-.+.+       +|.   ..+.+.++-+++. .| |+.+
T Consensus       297 r~el~~-------rg~---~~d~~~~erva~~l~ffp~~~  326 (344)
T KOG2170|consen  297 RAELRK-------RGL---APDQDFVERVANSLSFFPESS  326 (344)
T ss_pred             HHHHHh-------ccc---ccchHHHHHHHHhhccccccc
Confidence            988854       544   7788888887763 33 5433

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.77  E-value=1.1e-17  Score=184.27  Aligned_cols=186  Identities=17%  Similarity=0.204  Sum_probs=137.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-C-----------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-D-----------------  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~-----------------  267 (550)
                      +.||||+++++.+.+++...   +       -+..+||+||+|||||++|++||+.++... .                 
T Consensus        16 dEVIGQe~Vv~~L~~aL~~g---R-------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G   85 (830)
T PRK07003         16 ASLVGQEHVVRALTHALDGG---R-------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEG   85 (830)
T ss_pred             HHHcCcHHHHHHHHHHHhcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcC
Confidence            56899999999999888765   1       237889999999999999999999997521 0                 


Q ss_pred             CCCceeEEecCCCCchhhhhhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633          268 NDNHLIHFDMGNYTELESIKHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      ....++.+|-+.-.....+.    .+.+.+.    ...+.|+||||+|.++...+|.||+.||+.  .           .
T Consensus        86 ~h~DviEIDAas~rgVDdIR----eLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP--P-----------~  148 (830)
T PRK07003         86 RFVDYVEMDAASNRGVDEMA----ALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP--P-----------P  148 (830)
T ss_pred             CCceEEEecccccccHHHHH----HHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc--C-----------C
Confidence            01124444443211111122    2223222    245679999999999999999999999987  5           6


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      +++||++||-.                     ..+.+.+++|| ..|.|.   +++.+++...+...+..       .|+
T Consensus       149 ~v~FILaTtd~---------------------~KIp~TIrSRC-q~f~Fk---~Ls~eeIv~~L~~Il~~-------EgI  196 (830)
T PRK07003        149 HVKFILATTDP---------------------QKIPVTVLSRC-LQFNLK---QMPAGHIVSHLERILGE-------ERI  196 (830)
T ss_pred             CeEEEEEECCh---------------------hhccchhhhhe-EEEecC---CcCHHHHHHHHHHHHHH-------cCC
Confidence            77889988853                     35678899999 899999   99999999988887753       444


Q ss_pred             ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                         .++++++..|+..+-   | +.|..-+++++
T Consensus       197 ---~id~eAL~lIA~~A~---G-smRdALsLLdQ  223 (830)
T PRK07003        197 ---AFEPQALRLLARAAQ---G-SMRDALSLTDQ  223 (830)
T ss_pred             ---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence               789999999998653   5 55766666554

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.76  E-value=2.2e-17  Score=180.22  Aligned_cols=189  Identities=20%  Similarity=0.264  Sum_probs=138.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC------------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN------------------  266 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------  266 (550)
                      ..|+||+++++.+.+++...           +. ..+||+||+|||||++|+++|+.+....                  
T Consensus        15 ddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~   83 (702)
T PRK14960         15 NELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE   83 (702)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc
Confidence            56999999999999998866           43 7899999999999999999999987511                  


Q ss_pred             CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          267 DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       267 ~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                      ...-.++.+|.+.......+..++..+.-.-...++.|++|||+|.+++..++.|++.+++.  .           .++.
T Consensus        84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP--P-----------~~v~  150 (702)
T PRK14960         84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP--P-----------EHVK  150 (702)
T ss_pred             CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC--C-----------CCcE
Confidence            01113555665433222223233322111112245679999999999999999999999986  4           4566


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV  426 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l  426 (550)
                      ||++||-.                     ..+.+.+++|| .++.|.   +++.+++...+...+.+       .|+   
T Consensus       151 FILaTtd~---------------------~kIp~TIlSRC-q~feFk---pLs~eEI~k~L~~Il~k-------EgI---  195 (702)
T PRK14960        151 FLFATTDP---------------------QKLPITVISRC-LQFTLR---PLAVDEITKHLGAILEK-------EQI---  195 (702)
T ss_pred             EEEEECCh---------------------HhhhHHHHHhh-heeecc---CCCHHHHHHHHHHHHHH-------cCC---
Confidence            78877642                     23456789999 899999   99999999988888754       455   


Q ss_pred             cCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          427 CPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       427 ~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .++++++..|+..+-   | +.|.+-+.+++
T Consensus       196 ~id~eAL~~IA~~S~---G-dLRdALnLLDQ  222 (702)
T PRK14960        196 AADQDAIWQIAESAQ---G-SLRDALSLTDQ  222 (702)
T ss_pred             CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            889999999998653   5 56777666654

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.75  E-value=1.6e-17  Score=180.92  Aligned_cols=185  Identities=16%  Similarity=0.206  Sum_probs=136.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------  267 (550)
                      +.||||+++++.+.+++...   +       -|..+||+||+|||||++|+.||+.++..+.                  
T Consensus        16 ddVIGQe~vv~~L~~al~~g---R-------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~   85 (700)
T PRK12323         16 TTLVGQEHVVRALTHALEQQ---R-------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACT   85 (700)
T ss_pred             HHHcCcHHHHHHHHHHHHhC---C-------CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHH
Confidence            56999999999999999876   2       2378899999999999999999999976210                  


Q ss_pred             -----CCCceeEEecCCCCchhhhhhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCe
Q 036633          268 -----NDNHLIHFDMGNYTELESIKHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIA  338 (550)
Q Consensus       268 -----~~~~li~id~s~~~~~~~~s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~  338 (550)
                           ....++.+|.+.-.....+.    .+.+.+.    ...+.|++|||+|.++...+|.||+.||+.  .       
T Consensus        86 ~I~aG~hpDviEIdAas~~gVDdIR----eLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP--P-------  152 (700)
T PRK12323         86 EIDAGRFVDYIEMDAASNRGVDEMA----QLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP--P-------  152 (700)
T ss_pred             HHHcCCCCcceEecccccCCHHHHH----HHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC--C-------
Confidence                 00134444443211111222    2233333    234679999999999999999999999987  4       


Q ss_pred             EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 036633          339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRN  418 (550)
Q Consensus       339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l  418 (550)
                          .+++||++||..                     ..+.+.++||| ..+.|.   +++.+++...+...+..     
T Consensus       153 ----~~v~FILaTtep---------------------~kLlpTIrSRC-q~f~f~---~ls~eei~~~L~~Il~~-----  198 (700)
T PRK12323        153 ----EHVKFILATTDP---------------------QKIPVTVLSRC-LQFNLK---QMPPGHIVSHLDAILGE-----  198 (700)
T ss_pred             ----CCceEEEEeCCh---------------------HhhhhHHHHHH-HhcccC---CCChHHHHHHHHHHHHH-----
Confidence                567788888753                     35668899999 899999   99999999888877743     


Q ss_pred             ccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633          419 NDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMD  456 (550)
Q Consensus       419 ~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~  456 (550)
                        .|+   .+++++++.|+..+-   | +.|...++++
T Consensus       199 --Egi---~~d~eAL~~IA~~A~---G-s~RdALsLLd  227 (700)
T PRK12323        199 --EGI---AHEVNALRLLAQAAQ---G-SMRDALSLTD  227 (700)
T ss_pred             --cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHH
Confidence              444   789999999987643   5 5576655554

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=5.7e-18  Score=168.45  Aligned_cols=247  Identities=16%  Similarity=0.176  Sum_probs=174.1

Q ss_pred             HHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCC----CcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE
Q 036633          199 RVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS----SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH  274 (550)
Q Consensus       199 ~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~----~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~  274 (550)
                      .+-+.|++.||||++|++.|+-+++..- -|..+.    +.--|.++|+.||||||||++|+.||+....      ||+.
T Consensus         8 eIV~eLd~yIIGQ~~AKkaVAIALRNR~-RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~a------PFiK   80 (444)
T COG1220           8 EIVSELDRYIIGQDEAKKAVAIALRNRW-RRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGA------PFIK   80 (444)
T ss_pred             HHHHHHHhHhcCcHHHHHHHHHHHHHHH-HHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCC------CeEE
Confidence            4566788999999999999999996530 022222    2235689999999999999999999999877      9999


Q ss_pred             EecCCCCchhhhhhHHh---------------------------------------------------------------
Q 036633          275 FDMGNYTELESIKHFFD---------------------------------------------------------------  291 (550)
Q Consensus       275 id~s~~~~~~~~s~liG---------------------------------------------------------------  291 (550)
                      +..+-|++..++.+-+-                                                               
T Consensus        81 VEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~r  160 (444)
T COG1220          81 VEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFR  160 (444)
T ss_pred             EEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHH
Confidence            99888887655322111                                                               


Q ss_pred             ------------------------------------------------------------------------------HH
Q 036633          292 ------------------------------------------------------------------------------SL  293 (550)
Q Consensus       292 ------------------------------------------------------------------------------~l  293 (550)
                                                                                                    .+
T Consensus       161 kkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i  240 (444)
T COG1220         161 KKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEI  240 (444)
T ss_pred             HHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHH
Confidence                                                                                          00


Q ss_pred             -HHHHHh-CCCCeEEeccccccC------------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633          294 -AALVKK-RPYSVVLFDKIEKAN------------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY  359 (550)
Q Consensus       294 -t~al~~-~p~~VlllDEIeka~------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~  359 (550)
                       .+++.. -..++||+|||||..            ..||.-||.+++..  . +.--=-.|...+.+||++.-+..... 
T Consensus       241 ~~eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGs--t-V~TKyG~VkTdHILFIasGAFh~sKP-  316 (444)
T COG1220         241 KQEAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGS--T-VSTKYGPVKTDHILFIASGAFHVAKP-  316 (444)
T ss_pred             HHHHHHHHHhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCc--e-eeccccccccceEEEEecCceecCCh-
Confidence             111111 123799999999852            25899999999765  3 32221245667777887543321111 


Q ss_pred             HhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHH----HHHHHHHHhccCCCccccCCHHHHHH
Q 036633          360 EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW----ACEETKRRNNDSKAVIVCPSTSALVH  435 (550)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~----~l~~~~~~l~~~~~~~l~~~~~a~~~  435 (550)
                                      +-+-|+|-+|++--|.+.   +|+.+|+..|+..    .+.++..-++..|+ .+.|++++++.
T Consensus       317 ----------------SDLiPELQGRfPIRVEL~---~Lt~~Df~rILtep~~sLikQY~aLlkTE~v-~l~FtddaI~~  376 (444)
T COG1220         317 ----------------SDLIPELQGRFPIRVELD---ALTKEDFERILTEPKASLIKQYKALLKTEGV-ELEFTDDAIKR  376 (444)
T ss_pred             ----------------hhcChhhcCCCceEEEcc---cCCHHHHHHHHcCcchHHHHHHHHHHhhcCe-eEEecHHHHHH
Confidence                            235689999999999999   9999999999854    34445555566899 99999999999


Q ss_pred             HHhcCc------ccCCCcccHHHHHHcchhhHHHHHhhhhcCCCcccccc
Q 036633          436 IASNAA------RKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSK  479 (550)
Q Consensus       436 L~~~~~------~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~  479 (550)
                      |++.+|      .+.||  |-|..++++ .|.+.-+...-.++..+.|+.
T Consensus       377 iAeiA~~vN~~~ENIGA--RRLhTvlEr-lLediSFeA~d~~g~~v~Id~  423 (444)
T COG1220         377 IAEIAYQVNEKTENIGA--RRLHTVLER-LLEDISFEAPDMSGQKVTIDA  423 (444)
T ss_pred             HHHHHHHhcccccchhH--HHHHHHHHH-HHHHhCccCCcCCCCeEEEcH
Confidence            998766      45899  999999996 666555554444455554443

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.75  E-value=2.3e-17  Score=176.63  Aligned_cols=219  Identities=17%  Similarity=0.189  Sum_probs=152.9

Q ss_pred             CcccCcHHHHHH---HHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633          206 KRVFGQNDAIDV---IFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE  282 (550)
Q Consensus       206 ~~viGQ~~ai~~---i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~  282 (550)
                      +.++||++++..   +...+...           ++.+++|+||||||||++|+++|+.+..      +|+.++++... 
T Consensus        12 ~d~vGq~~~v~~~~~L~~~i~~~-----------~~~~ilL~GppGtGKTtLA~~ia~~~~~------~~~~l~a~~~~-   73 (413)
T PRK13342         12 DEVVGQEHLLGPGKPLRRMIEAG-----------RLSSMILWGPPGTGKTTLARIIAGATDA------PFEALSAVTSG-   73 (413)
T ss_pred             HHhcCcHHHhCcchHHHHHHHcC-----------CCceEEEECCCCCCHHHHHHHHHHHhCC------CEEEEeccccc-
Confidence            469999999866   66666543           4468999999999999999999998866      89999876542 


Q ss_pred             hhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633          283 LESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM  362 (550)
Q Consensus       283 ~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~  362 (550)
                      ...+..++..+........+.|||||||+.+++..++.|+..+++|  .             .++|.+|+...       
T Consensus        74 ~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~--~-------------iilI~att~n~-------  131 (413)
T PRK13342         74 VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDG--T-------------ITLIGATTENP-------  131 (413)
T ss_pred             HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcC--c-------------EEEEEeCCCCh-------
Confidence            1122222222222122235579999999999999999999999988  4             22454443211       


Q ss_pred             hhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc
Q 036633          363 LTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAAR  442 (550)
Q Consensus       363 ~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~  442 (550)
                                  ...+.+.+++|| .++.|.   |++.+++..++...+....     .++  +.++++++++|+..+- 
T Consensus       132 ------------~~~l~~aL~SR~-~~~~~~---~ls~e~i~~lL~~~l~~~~-----~~~--i~i~~~al~~l~~~s~-  187 (413)
T PRK13342        132 ------------SFEVNPALLSRA-QVFELK---PLSEEDIEQLLKRALEDKE-----RGL--VELDDEALDALARLAN-  187 (413)
T ss_pred             ------------hhhccHHHhccc-eeeEeC---CCCHHHHHHHHHHHHHHhh-----cCC--CCCCHHHHHHHHHhCC-
Confidence                        124578899999 899999   9999999999998875531     121  3789999999998652 


Q ss_pred             cCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCccccc
Q 036633          443 KYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWW  503 (550)
Q Consensus       443 ~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~  503 (550)
                        | |.|.+.+.++. . +..        ++  .|+.+............+++.++.+|+.
T Consensus       188 --G-d~R~aln~Le~-~-~~~--------~~--~It~~~v~~~~~~~~~~~d~~~~~~~~~  233 (413)
T PRK13342        188 --G-DARRALNLLEL-A-ALG--------VD--SITLELLEEALQKRAARYDKDGDEHYDL  233 (413)
T ss_pred             --C-CHHHHHHHHHH-H-HHc--------cC--CCCHHHHHHHHhhhhhccCCCccHHHHH
Confidence              6 77888888875 1 111        11  2455555665555556677776666654

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.75  E-value=3.8e-17  Score=183.20  Aligned_cols=185  Identities=20%  Similarity=0.240  Sum_probs=132.9

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCC---------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DND---------------  269 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~---------------  269 (550)
                      ..||||++++..+.+++...   +       -|..+||+||+|||||++|+++|+.+++.. ...               
T Consensus        16 ddIIGQe~Iv~~LknaI~~~---r-------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g   85 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQQ---R-------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQG   85 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHhC---C-------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcC
Confidence            56999999999998888765   1       236779999999999999999999998621 000               


Q ss_pred             --CceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633          270 --NHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       270 --~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                        ..++.+|.+.......+.    .+.+.+..    .++.|++|||+++++++.++.||+.||+.  .           .
T Consensus        86 ~~~DviEidAas~~kVDdIR----eLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP--P-----------~  148 (944)
T PRK14949         86 RFVDLIEVDAASRTKVDDTR----ELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP--P-----------E  148 (944)
T ss_pred             CCceEEEeccccccCHHHHH----HHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc--C-----------C
Confidence              011223322111111122    33333332    45679999999999999999999999986  4           4


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      +++||++||-.                     ..+.+.+++|| .++.|.   ||+.+++...+...+..       .++
T Consensus       149 ~vrFILaTTe~---------------------~kLl~TIlSRC-q~f~fk---pLs~eEI~~~L~~il~~-------EgI  196 (944)
T PRK14949        149 HVKFLLATTDP---------------------QKLPVTVLSRC-LQFNLK---SLTQDEIGTQLNHILTQ-------EQL  196 (944)
T ss_pred             CeEEEEECCCc---------------------hhchHHHHHhh-eEEeCC---CCCHHHHHHHHHHHHHH-------cCC
Confidence            56677776642                     34667899999 899999   99999999888877754       344


Q ss_pred             ccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633          424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMD  456 (550)
Q Consensus       424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~  456 (550)
                         .+++++++.|+..+-   | +.|..-++++
T Consensus       197 ---~~edeAL~lIA~~S~---G-d~R~ALnLLd  222 (944)
T PRK14949        197 ---PFEAEALTLLAKAAN---G-SMRDALSLTD  222 (944)
T ss_pred             ---CCCHHHHHHHHHHcC---C-CHHHHHHHHH
Confidence               789999999998643   5 5576666655

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.75  E-value=2.6e-17  Score=179.37  Aligned_cols=186  Identities=20%  Similarity=0.229  Sum_probs=137.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-C-----------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-D-----------------  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~-----------------  267 (550)
                      +.||||+++++.+.+++...   +       -|..+||+||+|||||++|+++|+.++..+ .                 
T Consensus        16 ~divGq~~v~~~L~~~~~~~---~-------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g   85 (509)
T PRK14958         16 QEVIGQAPVVRALSNALDQQ---Y-------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEG   85 (509)
T ss_pred             HHhcCCHHHHHHHHHHHHhC---C-------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcC
Confidence            56999999999999999865   1       337899999999999999999999997621 0                 


Q ss_pred             CCCceeEEecCCCCchhhhhhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633          268 NDNHLIHFDMGNYTELESIKHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      ....++.+|.+.......+.    .+.+.+.    ..+|.|++|||+|.++++.++.||+.|++.  .           .
T Consensus        86 ~~~d~~eidaas~~~v~~iR----~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep--p-----------~  148 (509)
T PRK14958         86 RFPDLFEVDAASRTKVEDTR----ELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP--P-----------S  148 (509)
T ss_pred             CCceEEEEcccccCCHHHHH----HHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc--C-----------C
Confidence            11125556544322222222    2233333    245679999999999999999999999987  5           5


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      +++||++|+-.                     ....+.+++|| .++.|.   +++.+++...+...+.+       .|+
T Consensus       149 ~~~fIlattd~---------------------~kl~~tI~SRc-~~~~f~---~l~~~~i~~~l~~il~~-------egi  196 (509)
T PRK14958        149 HVKFILATTDH---------------------HKLPVTVLSRC-LQFHLA---QLPPLQIAAHCQHLLKE-------ENV  196 (509)
T ss_pred             CeEEEEEECCh---------------------HhchHHHHHHh-hhhhcC---CCCHHHHHHHHHHHHHH-------cCC
Confidence            67788877532                     23456699999 899999   99999999888877754       455


Q ss_pred             ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                         .+++++++.|+..+-   | +.|.+-+.+++
T Consensus       197 ---~~~~~al~~ia~~s~---G-slR~al~lLdq  223 (509)
T PRK14958        197 ---EFENAALDLLARAAN---G-SVRDALSLLDQ  223 (509)
T ss_pred             ---CCCHHHHHHHHHHcC---C-cHHHHHHHHHH
Confidence               789999999998643   5 55777777764

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=99.74  E-value=4.1e-17  Score=161.05  Aligned_cols=176  Identities=19%  Similarity=0.236  Sum_probs=131.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++||++++..+.+++.+.           -..++||+||||||||+.|+++|+.+|+.......+...|.|......-
T Consensus        36 de~~gQe~vV~~L~~a~~~~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisv  104 (346)
T KOG0989|consen   36 DELAGQEHVVQVLKNALLRR-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISV  104 (346)
T ss_pred             HhhcchHHHHHHHHHHHhhc-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccc
Confidence            56899999999999999864           1259999999999999999999999998211122233345554433221


Q ss_pred             hhhHHh---HHHHHHH------hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChH
Q 036633          286 IKHFFD---SLAALVK------KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDE  356 (550)
Q Consensus       286 ~s~liG---~lt~al~------~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~  356 (550)
                      +..-+.   .++....      ..|+.|++|||.|-+..+.|+.|.+++|+-  .           ++++||+-||.-  
T Consensus       105 vr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~--s-----------~~trFiLIcnyl--  169 (346)
T KOG0989|consen  105 VREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF--S-----------RTTRFILICNYL--  169 (346)
T ss_pred             hhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc--c-----------cceEEEEEcCCh--
Confidence            111010   2222221      145689999999999999999999999986  4           678899999974  


Q ss_pred             HHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633          357 QVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI  436 (550)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L  436 (550)
                                         ..+.+.+.+|| .-+.|.   +|..+++...++....+       .|+   .+++++++.|
T Consensus       170 -------------------srii~pi~SRC-~KfrFk---~L~d~~iv~rL~~Ia~~-------E~v---~~d~~al~~I  216 (346)
T KOG0989|consen  170 -------------------SRIIRPLVSRC-QKFRFK---KLKDEDIVDRLEKIASK-------EGV---DIDDDALKLI  216 (346)
T ss_pred             -------------------hhCChHHHhhH-HHhcCC---CcchHHHHHHHHHHHHH-------hCC---CCCHHHHHHH
Confidence                               35566799999 799999   99999998887776643       555   8999999999


Q ss_pred             HhcC
Q 036633          437 ASNA  440 (550)
Q Consensus       437 ~~~~  440 (550)
                      ++.+
T Consensus       217 ~~~S  220 (346)
T KOG0989|consen  217 AKIS  220 (346)
T ss_pred             HHHc
Confidence            9864

>PLN03025 replication factor C subunit; Provisional

Probab=99.74  E-value=4.7e-17  Score=168.42  Aligned_cols=187  Identities=16%  Similarity=0.181  Sum_probs=132.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++||++++..+...+...           +..+++|+||||||||++|+++|+.+++.+ ....++.+|.++......
T Consensus        13 ~~~~g~~~~~~~L~~~~~~~-----------~~~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~~~~   80 (319)
T PLN03025         13 DDIVGNEDAVSRLQVIARDG-----------NMPNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRGIDV   80 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhcC-----------CCceEEEECCCCCCHHHHHHHHHHHHhccc-CccceeeecccccccHHH
Confidence            45789999998877665533           224799999999999999999999997621 123466677665433222


Q ss_pred             hhhHHhHHHHHH---HhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633          286 IKHFFDSLAALV---KKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM  362 (550)
Q Consensus       286 ~s~liG~lt~al---~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~  362 (550)
                      +...+..+....   ...++.||+|||+|.++++.|+.|++.++..  .           .++.||+++|..        
T Consensus        81 vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~--~-----------~~t~~il~~n~~--------  139 (319)
T PLN03025         81 VRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY--S-----------NTTRFALACNTS--------  139 (319)
T ss_pred             HHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc--c-----------CCceEEEEeCCc--------
Confidence            222222221110   0123579999999999999999999999864  3           345688888853        


Q ss_pred             hhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc
Q 036633          363 LTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAAR  442 (550)
Q Consensus       363 ~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~  442 (550)
                                   ..+.|++.+|| .++.|.   |++.+++...+...+.+       .|+   .++++++++|+..+- 
T Consensus       140 -------------~~i~~~L~SRc-~~i~f~---~l~~~~l~~~L~~i~~~-------egi---~i~~~~l~~i~~~~~-  191 (319)
T PLN03025        140 -------------SKIIEPIQSRC-AIVRFS---RLSDQEILGRLMKVVEA-------EKV---PYVPEGLEAIIFTAD-  191 (319)
T ss_pred             -------------cccchhHHHhh-hcccCC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHcC-
Confidence                         34567899999 799999   99999998888776643       555   789999999998542 


Q ss_pred             cCCCcccHHHHHHc
Q 036633          443 KYGQNGEGLKRWMD  456 (550)
Q Consensus       443 ~~GaN~R~L~~~i~  456 (550)
                        | +.|.+-+.++
T Consensus       192 --g-DlR~aln~Lq  202 (319)
T PLN03025        192 --G-DMRQALNNLQ  202 (319)
T ss_pred             --C-CHHHHHHHHH
Confidence              4 4465555554

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.74  E-value=8e-17  Score=178.06  Aligned_cols=190  Identities=19%  Similarity=0.209  Sum_probs=136.0

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CC---------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DN---------------  268 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~---------------  268 (550)
                      -..||||++++..+.+++...   +       -|..+||+||+|||||++|+++|+.++... ..               
T Consensus        15 f~divGQe~vv~~L~~~l~~~---r-------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~   84 (647)
T PRK07994         15 FAEVVGQEHVLTALANALDLG---R-------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQ   84 (647)
T ss_pred             HHHhcCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHc
Confidence            357999999999999888865   1       236789999999999999999999997621 00               


Q ss_pred             --CCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          269 --DNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       269 --~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                        ...++.+|.+.......+..++..+...-...++.|++|||+|+++...+|.||+.||+.  .           .+++
T Consensus        85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP--p-----------~~v~  151 (647)
T PRK07994         85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP--P-----------EHVK  151 (647)
T ss_pred             CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC--C-----------CCeE
Confidence              112344444322211222222222211112345679999999999999999999999986  4           5666


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV  426 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l  426 (550)
                      ||++|+-.                     ..+.+.+++|| ..+.|.   +++.+++...+...+..       .|+   
T Consensus       152 FIL~Tt~~---------------------~kLl~TI~SRC-~~~~f~---~Ls~~ei~~~L~~il~~-------e~i---  196 (647)
T PRK07994        152 FLLATTDP---------------------QKLPVTILSRC-LQFHLK---ALDVEQIRQQLEHILQA-------EQI---  196 (647)
T ss_pred             EEEecCCc---------------------cccchHHHhhh-eEeeCC---CCCHHHHHHHHHHHHHH-------cCC---
Confidence            78877643                     35667799999 899999   99999999888887743       344   


Q ss_pred             cCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633          427 CPSTSALVHIASNAARKYGQNGEGLKRWMD  456 (550)
Q Consensus       427 ~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~  456 (550)
                      .++++++..|+..+.   | +.|..-++++
T Consensus       197 ~~e~~aL~~Ia~~s~---G-s~R~Al~lld  222 (647)
T PRK07994        197 PFEPRALQLLARAAD---G-SMRDALSLTD  222 (647)
T ss_pred             CCCHHHHHHHHHHcC---C-CHHHHHHHHH
Confidence            789999999998653   5 5576655554

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.73  E-value=8.8e-17  Score=175.24  Aligned_cols=190  Identities=21%  Similarity=0.238  Sum_probs=134.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-C-----------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-D-----------------  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~-----------------  267 (550)
                      ..|+||++++..+..++...   +       -|..+||+||+|||||++|+.+|+.++... .                 
T Consensus        16 ~diiGq~~~v~~L~~~i~~~---r-------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~   85 (546)
T PRK14957         16 AEVAGQQHALNSLVHALETQ---K-------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN   85 (546)
T ss_pred             HHhcCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC
Confidence            56899999999999888765   1       236799999999999999999999987511 0                 


Q ss_pred             CCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633          268 NDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLI  347 (550)
Q Consensus       268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii  347 (550)
                      ....++.+|.+.......+..++..+...-...++.|++|||+|+++.+.++.||+.|++.  .           .+++|
T Consensus        86 ~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep--p-----------~~v~f  152 (546)
T PRK14957         86 SFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP--P-----------EYVKF  152 (546)
T ss_pred             CCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC--C-----------CCceE
Confidence            1123444544322211122222222211112235679999999999999999999999987  4           45667


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVC  427 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~  427 (550)
                      |++|+-.                     ....+.+++|| .++.|.   +++.+++...+...+.+       .|+   .
T Consensus       153 IL~Ttd~---------------------~kil~tI~SRc-~~~~f~---~Ls~~eI~~~L~~il~~-------egi---~  197 (546)
T PRK14957        153 ILATTDY---------------------HKIPVTILSRC-IQLHLK---HISQADIKDQLKIILAK-------ENI---N  197 (546)
T ss_pred             EEEECCh---------------------hhhhhhHHHhe-eeEEeC---CCCHHHHHHHHHHHHHH-------cCC---C
Confidence            7666431                     23445699999 899999   99999999888877754       455   7


Q ss_pred             CCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          428 PSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       428 ~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++++++++|+..+-   | +.|.+-+.+++
T Consensus       198 ~e~~Al~~Ia~~s~---G-dlR~alnlLek  223 (546)
T PRK14957        198 SDEQSLEYIAYHAK---G-SLRDALSLLDQ  223 (546)
T ss_pred             CCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            89999999998653   5 56877777664

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.73  E-value=7.2e-17  Score=174.17  Aligned_cols=187  Identities=21%  Similarity=0.319  Sum_probs=133.5

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------  266 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------  266 (550)
                      -+.|+||++++..+..++...   +       -|.++||+||||||||++|+++|+.++...                  
T Consensus        13 ~~divGq~~i~~~L~~~i~~~---~-------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~   82 (472)
T PRK14962         13 FSEVVGQDHVKKLIINALKKN---S-------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE   82 (472)
T ss_pred             HHHccCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence            356999999998888877755   1       236799999999999999999999987511                  


Q ss_pred             CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          267 DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       267 ~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      .....++.+|.+.......+.    .+.+.++..    .+.||++||++.++.+.++.|+..+++.  .           
T Consensus        83 g~~~dv~el~aa~~~gid~iR----~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p--~-----------  145 (472)
T PRK14962         83 GTFMDVIELDAASNRGIDEIR----KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEP--P-----------  145 (472)
T ss_pred             CCCCccEEEeCcccCCHHHHH----HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhC--C-----------
Confidence            011135556554322111111    233333333    3569999999999999999999999985  3           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                      .++++|++||..                     ..+.+.+.+|+ .++.|.   |++.+++..++...+..       .|
T Consensus       146 ~~vv~Ilattn~---------------------~kl~~~L~SR~-~vv~f~---~l~~~el~~~L~~i~~~-------eg  193 (472)
T PRK14962        146 SHVVFVLATTNL---------------------EKVPPTIISRC-QVIEFR---NISDELIIKRLQEVAEA-------EG  193 (472)
T ss_pred             CcEEEEEEeCCh---------------------HhhhHHHhcCc-EEEEEC---CccHHHHHHHHHHHHHH-------cC
Confidence            346677666521                     24567899999 799999   99999998888877643       45


Q ss_pred             CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +   .++++++++|+..+.   | +.|.+-+.++.
T Consensus       194 i---~i~~eal~~Ia~~s~---G-dlR~aln~Le~  221 (472)
T PRK14962        194 I---EIDREALSFIAKRAS---G-GLRDALTMLEQ  221 (472)
T ss_pred             C---CCCHHHHHHHHHHhC---C-CHHHHHHHHHH
Confidence            4   789999999998543   4 45766666653

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.73  E-value=1.3e-16  Score=175.51  Aligned_cols=190  Identities=17%  Similarity=0.240  Sum_probs=137.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-------------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-------------------  266 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-------------------  266 (550)
                      +.|+||+++++.+.+++...   +       -|..+||+||+|||||++|+++|+.++...                   
T Consensus        13 ~eivGq~~i~~~L~~~i~~~---r-------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~   82 (584)
T PRK14952         13 AEVVGQEHVTEPLSSALDAG---R-------INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPN   82 (584)
T ss_pred             HHhcCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcc
Confidence            56899999999999998865   1       236789999999999999999999998411                   


Q ss_pred             -CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633          267 -DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNT  345 (550)
Q Consensus       267 -~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~  345 (550)
                       .....++.+|.+.......+..++..+...-...++.|++|||+|.++.+.++.||+.|++-  .           .++
T Consensus        83 ~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp--p-----------~~~  149 (584)
T PRK14952         83 GPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP--P-----------EHL  149 (584)
T ss_pred             cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC--C-----------CCe
Confidence             01223555555432222222222221111112245679999999999999999999999986  4           567


Q ss_pred             EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                      +||++|+-.                     ..+.+.+.+|+ .++.|.   +++.+++...+...+..       .|+  
T Consensus       150 ~fIL~tte~---------------------~kll~TI~SRc-~~~~F~---~l~~~~i~~~L~~i~~~-------egi--  195 (584)
T PRK14952        150 IFIFATTEP---------------------EKVLPTIRSRT-HHYPFR---LLPPRTMRALIARICEQ-------EGV--  195 (584)
T ss_pred             EEEEEeCCh---------------------HhhHHHHHHhc-eEEEee---CCCHHHHHHHHHHHHHH-------cCC--
Confidence            788877542                     24557799999 899999   99999998888777743       455  


Q ss_pred             ccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          426 VCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                       .++++++.+|+..+.   | +.|..-+.+++
T Consensus       196 -~i~~~al~~Ia~~s~---G-dlR~aln~Ldq  222 (584)
T PRK14952        196 -VVDDAVYPLVIRAGG---G-SPRDTLSVLDQ  222 (584)
T ss_pred             -CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence             789999999988543   5 55777676664

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.72  E-value=1.1e-16  Score=172.16  Aligned_cols=186  Identities=19%  Similarity=0.223  Sum_probs=139.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------------C
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------D  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------~  267 (550)
                      +.+|||+++++.+.+++...   +       -|.++||+||+|||||++|+++|+.+....                  .
T Consensus        13 ~dliGQe~vv~~L~~a~~~~---r-------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~   82 (491)
T PRK14964         13 KDLVGQDVLVRILRNAFTLN---K-------IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNS   82 (491)
T ss_pred             HHhcCcHHHHHHHHHHHHcC---C-------CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhcc
Confidence            56899999999988888765   1       237999999999999999999999875310                  1


Q ss_pred             CCCceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633          268 NDNHLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      ....++.+|.+.......+.    .+.+.+...|    +.|++|||++.++.+.++.|++.|++.  .           .
T Consensus        83 ~~~Dv~eidaas~~~vddIR----~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP--p-----------~  145 (491)
T PRK14964         83 NHPDVIEIDAASNTSVDDIK----VILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP--A-----------P  145 (491)
T ss_pred             CCCCEEEEecccCCCHHHHH----HHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC--C-----------C
Confidence            23355667765433322332    2334444333    569999999999999999999999987  5           5


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      +++||++|+-.                     ..+.+.+.+|| ..+.|.   +++.+++...+...+.+       .|+
T Consensus       146 ~v~fIlatte~---------------------~Kl~~tI~SRc-~~~~f~---~l~~~el~~~L~~ia~~-------Egi  193 (491)
T PRK14964        146 HVKFILATTEV---------------------KKIPVTIISRC-QRFDLQ---KIPTDKLVEHLVDIAKK-------ENI  193 (491)
T ss_pred             CeEEEEEeCCh---------------------HHHHHHHHHhh-eeeecc---cccHHHHHHHHHHHHHH-------cCC
Confidence            57788877532                     24567799999 899999   99999999888877753       455


Q ss_pred             ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                         .+++++++.|+..+-   | +.|.+.+.+++
T Consensus       194 ---~i~~eAL~lIa~~s~---G-slR~alslLdq  220 (491)
T PRK14964        194 ---EHDEESLKLIAENSS---G-SMRNALFLLEQ  220 (491)
T ss_pred             ---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence               889999999998653   5 66877777765

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.72  E-value=1.5e-16  Score=167.42  Aligned_cols=187  Identities=18%  Similarity=0.235  Sum_probs=133.4

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCC--------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DND--------------  269 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~--------------  269 (550)
                      -+.|+||+++++.+.+++...   +       -|..++|+||+|||||++|+++|+.++... ...              
T Consensus        15 ~~~iiGq~~~~~~l~~~~~~~---~-------~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~   84 (363)
T PRK14961         15 FRDIIGQKHIVTAISNGLSLG---R-------IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEK   84 (363)
T ss_pred             hhhccChHHHHHHHHHHHHcC---C-------CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence            357999999999998888765   1       236789999999999999999999997410 011              


Q ss_pred             ---CceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          270 ---NHLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       270 ---~~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                         -.++.+|.+...   .+.. +-.+.+.+...|    +.|++|||+++++...++.||+.+++.  .           
T Consensus        85 ~~~~d~~~~~~~~~~---~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~--~-----------  147 (363)
T PRK14961         85 GLCLDLIEIDAASRT---KVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP--P-----------  147 (363)
T ss_pred             CCCCceEEecccccC---CHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC--C-----------
Confidence               123333332211   1111 113334444333    469999999999999999999999986  4           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                      .++.||++|+-.                     ..+.+.+.+|+ ..+.|.   |++.+++..++...+..       .|
T Consensus       148 ~~~~fIl~t~~~---------------------~~l~~tI~SRc-~~~~~~---~l~~~el~~~L~~~~~~-------~g  195 (363)
T PRK14961        148 QHIKFILATTDV---------------------EKIPKTILSRC-LQFKLK---IISEEKIFNFLKYILIK-------ES  195 (363)
T ss_pred             CCeEEEEEcCCh---------------------HhhhHHHHhhc-eEEeCC---CCCHHHHHHHHHHHHHH-------cC
Confidence            456677776532                     23567799999 899999   99999999888877744       44


Q ss_pred             CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +   .++++++++|+..+-   | +.|.+-+.+++
T Consensus       196 ~---~i~~~al~~ia~~s~---G-~~R~al~~l~~  223 (363)
T PRK14961        196 I---DTDEYALKLIAYHAH---G-SMRDALNLLEH  223 (363)
T ss_pred             C---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            4   789999999998643   5 56776666654

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.5e-16  Score=160.12  Aligned_cols=189  Identities=21%  Similarity=0.314  Sum_probs=138.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..|=|-++-++.|.+++...+-     ...|+..   |.-+|||||||||||.|||++|.....      .|+++..|++
T Consensus       151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~P---PKGVLLYGPPGTGKTLLAkAVA~~T~A------tFIrvvgSEl  221 (406)
T COG1222         151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDP---PKGVLLYGPPGTGKTLLAKAVANQTDA------TFIRVVGSEL  221 (406)
T ss_pred             hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCC---CCceEeeCCCCCcHHHHHHHHHhccCc------eEEEeccHHH
Confidence            4577889999999999876621     1344422   268999999999999999999998666      9999999887


Q ss_pred             CchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhh--ccccccccCCeEe
Q 036633          281 TELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKT--DFNRKATRGIAAF  340 (550)
Q Consensus       281 ~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~--g~~~~l~d~g~~v  340 (550)
                           +.+++|       .+-+..+.+.-||||+||||..           +.+||..++++|..  |  .  ..     
T Consensus       222 -----VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG--F--D~-----  287 (406)
T COG1222         222 -----VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG--F--DP-----  287 (406)
T ss_pred             -----HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC--C--CC-----
Confidence                 667777       3333444444599999999853           56899999999852  4  1  11     


Q ss_pred             ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 036633          341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRN  418 (550)
Q Consensus       341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l  418 (550)
                       ..|+-|||+||..                     ..++|+++  +|||..|.|+   ..+.+...+|++.+-.+     
T Consensus       288 -~~nvKVI~ATNR~---------------------D~LDPALLRPGR~DRkIEfp---lPd~~gR~~Il~IHtrk-----  337 (406)
T COG1222         288 -RGNVKVIMATNRP---------------------DILDPALLRPGRFDRKIEFP---LPDEEGRAEILKIHTRK-----  337 (406)
T ss_pred             -CCCeEEEEecCCc---------------------cccChhhcCCCcccceeecC---CCCHHHHHHHHHHHhhh-----
Confidence             1456699999985                     57889998  9999999999   77888888888776632     


Q ss_pred             ccCCCccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          419 NDSKAVIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       419 ~~~~~~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                             ..+++++ ++.|+..+-   |+||-+|+.++..
T Consensus       338 -------M~l~~dvd~e~la~~~~---g~sGAdlkaictE  367 (406)
T COG1222         338 -------MNLADDVDLELLARLTE---GFSGADLKAICTE  367 (406)
T ss_pred             -------ccCccCcCHHHHHHhcC---CCchHHHHHHHHH
Confidence                   1333333 455555332   4455778887765

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.71  E-value=2.5e-16  Score=179.22  Aligned_cols=189  Identities=15%  Similarity=0.188  Sum_probs=137.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC-C----------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN-D----------------  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~----------------  267 (550)
                      ..||||+++++.|.+++...           +. ..+||+||+|||||++|++||+.|+... .                
T Consensus        15 ~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~   83 (824)
T PRK07764         15 AEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP   83 (824)
T ss_pred             HHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence            56899999999999998865           33 6799999999999999999999997511 0                


Q ss_pred             ---CCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633          268 ---NDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTN  344 (550)
Q Consensus       268 ---~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~  344 (550)
                         ....++.+|.+.......+..++..+...-....|.|+||||+|+++.+.+|.||++|++-  .           .+
T Consensus        84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp--P-----------~~  150 (824)
T PRK07764         84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP--P-----------EH  150 (824)
T ss_pred             CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC--C-----------CC
Confidence               1223455554332222222222221111112345689999999999999999999999986  4           56


Q ss_pred             eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633          345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV  424 (550)
Q Consensus       345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~  424 (550)
                      ++|||+|+..                     ..+.+.+.+|| .+|.|.   +++.+++..++...+..       .|+ 
T Consensus       151 ~~fIl~tt~~---------------------~kLl~TIrSRc-~~v~F~---~l~~~~l~~~L~~il~~-------EGv-  197 (824)
T PRK07764        151 LKFIFATTEP---------------------DKVIGTIRSRT-HHYPFR---LVPPEVMRGYLERICAQ-------EGV-  197 (824)
T ss_pred             eEEEEEeCCh---------------------hhhhHHHHhhe-eEEEee---CCCHHHHHHHHHHHHHH-------cCC-
Confidence            7788877632                     13456699999 899999   99999999888877743       455 


Q ss_pred             cccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        .++++++.+|+..+.   | +.|.+.+.+++
T Consensus       198 --~id~eal~lLa~~sg---G-dlR~Al~eLEK  224 (824)
T PRK07764        198 --PVEPGVLPLVIRAGG---G-SVRDSLSVLDQ  224 (824)
T ss_pred             --CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence              789999999988653   5 66777777664

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.70  E-value=4.4e-16  Score=160.08  Aligned_cols=195  Identities=16%  Similarity=0.151  Sum_probs=136.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++||++.++.+..++...   .   ..+..|.+++|+||||||||++|+++|+.+..      ++..++.+....   
T Consensus         4 ~~~iG~~~~~~~l~~~l~~~---~---~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------~~~~~~~~~~~~---   68 (305)
T TIGR00635         4 AEFIGQEKVKEQLQLFIEAA---K---MRQEALDHLLLYGPPGLGKTTLAHIIANEMGV------NLKITSGPALEK---   68 (305)
T ss_pred             HHHcCHHHHHHHHHHHHHHH---H---hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC------CEEEeccchhcC---
Confidence            46899999999988888654   1   11223478999999999999999999999865      555555443321   


Q ss_pred             hhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-C-----eEeecCCeEEEEeCCCChHHHH
Q 036633          286 IKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-I-----AAFDLTNTLIIMTSDLKDEQVY  359 (550)
Q Consensus       286 ~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g-----~~vd~~~~iiI~TsN~g~~~~~  359 (550)
                      ...+.+.+.. +  ....|+|||||+.+++..++.|+.+++++... +.-+ +     ........++|.+||..     
T Consensus        69 ~~~l~~~l~~-~--~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~li~~t~~~-----  139 (305)
T TIGR00635        69 PGDLAAILTN-L--EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLD-IVIGKGPSARSVRLDLPPFTLVGATTRA-----  139 (305)
T ss_pred             chhHHHHHHh-c--ccCCEEEEehHhhhCHHHHHHhhHHHhhhhee-eeeccCccccceeecCCCeEEEEecCCc-----
Confidence            1122222221 1  34579999999999999999999999877211 1111 1     11233445667766653     


Q ss_pred             HhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633          360 EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN  439 (550)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~  439 (550)
                                      ..+.+++.+||..++.|.   |++.+++..++...+..       .   .+.++++++++|++.
T Consensus       140 ----------------~~l~~~l~sR~~~~~~l~---~l~~~e~~~il~~~~~~-------~---~~~~~~~al~~ia~~  190 (305)
T TIGR00635       140 ----------------GMLTSPLRDRFGIILRLE---FYTVEELAEIVSRSAGL-------L---NVEIEPEAALEIARR  190 (305)
T ss_pred             ----------------cccCHHHHhhcceEEEeC---CCCHHHHHHHHHHHHHH-------h---CCCcCHHHHHHHHHH
Confidence                            356788999998788999   99999999999876642       3   347899999999986


Q ss_pred             CcccCCCcccHHHHHHcc
Q 036633          440 AARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       440 ~~~~~GaN~R~L~~~i~~  457 (550)
                      +-   | +.|.+.++++.
T Consensus       191 ~~---G-~pR~~~~ll~~  204 (305)
T TIGR00635       191 SR---G-TPRIANRLLRR  204 (305)
T ss_pred             hC---C-CcchHHHHHHH
Confidence            54   4 55766666664

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.70  E-value=3.6e-16  Score=172.27  Aligned_cols=185  Identities=19%  Similarity=0.267  Sum_probs=135.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC-CC---------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN-DN---------------  268 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~---------------  268 (550)
                      ..|+||+++++.+.+++...           +. ..+||+||+|||||++|+++|+.++..+ ..               
T Consensus        16 ddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~   84 (709)
T PRK08691         16 ADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDA   84 (709)
T ss_pred             HHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhc
Confidence            56999999999999988865           33 7899999999999999999999987621 00               


Q ss_pred             --CCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          269 --DNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       269 --~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                        .-.++.+|.+.-.....+.    .+.+.+..    ..+.||+|||+++++...++.||+.|++.  .           
T Consensus        85 g~~~DvlEidaAs~~gVd~IR----elle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP--p-----------  147 (709)
T PRK08691         85 GRYVDLLEIDAASNTGIDNIR----EVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP--P-----------  147 (709)
T ss_pred             cCccceEEEeccccCCHHHHH----HHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC--C-----------
Confidence              0112333332211111122    22222222    34579999999999999999999999976  4           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                      .+++||++||-.                     ....+.+++|| ..|.|.   +++.+++...+...+..       .|
T Consensus       148 ~~v~fILaTtd~---------------------~kL~~TIrSRC-~~f~f~---~Ls~eeI~~~L~~Il~k-------Eg  195 (709)
T PRK08691        148 EHVKFILATTDP---------------------HKVPVTVLSRC-LQFVLR---NMTAQQVADHLAHVLDS-------EK  195 (709)
T ss_pred             CCcEEEEEeCCc---------------------cccchHHHHHH-hhhhcC---CCCHHHHHHHHHHHHHH-------cC
Confidence            456788887642                     34556789999 899999   99999999988887753       45


Q ss_pred             CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +   .++++++..|+..+.   | |.|.+.+.+++
T Consensus       196 i---~id~eAL~~Ia~~A~---G-slRdAlnLLDq  223 (709)
T PRK08691        196 I---AYEPPALQLLGRAAA---G-SMRDALSLLDQ  223 (709)
T ss_pred             C---CcCHHHHHHHHHHhC---C-CHHHHHHHHHH
Confidence            5   789999999998653   6 77888887765

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.70  E-value=3.5e-16  Score=162.60  Aligned_cols=192  Identities=17%  Similarity=0.166  Sum_probs=138.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ..++||++.+..+...+...   +    .++.| .+++|+||||||||++|+++|+.+..      .+..++.+.+....
T Consensus        25 ~~~vG~~~~~~~l~~~l~~~---~----~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~------~~~~~~~~~~~~~~   91 (328)
T PRK00080         25 DEFIGQEKVKENLKIFIEAA---K----KRGEALDHVLLYGPPGLGKTTLANIIANEMGV------NIRITSGPALEKPG   91 (328)
T ss_pred             HHhcCcHHHHHHHHHHHHHH---H----hcCCCCCcEEEECCCCccHHHHHHHHHHHhCC------CeEEEecccccChH
Confidence            56899999999988877654   2    11234 78999999999999999999999865      56656555443222


Q ss_pred             hhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccc----cC--CeE--eecCCeEEEEeCCCChH
Q 036633          285 SIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKAT----RG--IAA--FDLTNTLIIMTSDLKDE  356 (550)
Q Consensus       285 ~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~----d~--g~~--vd~~~~iiI~TsN~g~~  356 (550)
                      .   +.+.+. .+  ..++|||||||+.+++.+++.|+..+++.  . +.    ++  .+.  ......++|++||..  
T Consensus        92 ~---l~~~l~-~l--~~~~vl~IDEi~~l~~~~~e~l~~~~e~~--~-~~~~l~~~~~~~~~~~~l~~~~li~at~~~--  160 (328)
T PRK00080         92 D---LAAILT-NL--EEGDVLFIDEIHRLSPVVEEILYPAMEDF--R-LDIMIGKGPAARSIRLDLPPFTLIGATTRA--  160 (328)
T ss_pred             H---HHHHHH-hc--ccCCEEEEecHhhcchHHHHHHHHHHHhc--c-eeeeeccCccccceeecCCCceEEeecCCc--
Confidence            2   222222 11  35689999999999999999999999876  3 21    11  111  233445667777642  


Q ss_pred             HHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633          357 QVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI  436 (550)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L  436 (550)
                                         ..+++++.+|++.++.|.   +++.+++..|+...+..       .   .+.++++++++|
T Consensus       161 -------------------~~l~~~L~sRf~~~~~l~---~~~~~e~~~il~~~~~~-------~---~~~~~~~~~~~i  208 (328)
T PRK00080        161 -------------------GLLTSPLRDRFGIVQRLE---FYTVEELEKIVKRSARI-------L---GVEIDEEGALEI  208 (328)
T ss_pred             -------------------ccCCHHHHHhcCeeeecC---CCCHHHHHHHHHHHHHH-------c---CCCcCHHHHHHH
Confidence                               356788999998889999   99999999999877643       3   347899999999


Q ss_pred             HhcCcccCCCcccHHHHHHcc
Q 036633          437 ASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       437 ~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +..+-   | +.|.+.+.+++
T Consensus       209 a~~~~---G-~pR~a~~~l~~  225 (328)
T PRK00080        209 ARRSR---G-TPRIANRLLRR  225 (328)
T ss_pred             HHHcC---C-CchHHHHHHHH
Confidence            98764   4 55766666664

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.70  E-value=3.5e-16  Score=172.67  Aligned_cols=186  Identities=17%  Similarity=0.243  Sum_probs=134.9

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------  267 (550)
                      +.||||++++..+.+++...   +       -|..+||+||+|||||++|+++|+.++..+.                  
T Consensus        16 ~dviGQe~vv~~L~~~l~~~---r-------l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~   85 (618)
T PRK14951         16 SEMVGQEHVVQALTNALTQQ---R-------LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACR   85 (618)
T ss_pred             HHhcCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHH
Confidence            56899999999999988866   2       3478899999999999999999999975210                  


Q ss_pred             -----CCCceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCe
Q 036633          268 -----NDNHLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIA  338 (550)
Q Consensus       268 -----~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~  338 (550)
                           ....++.+|.+.-.....+.    .+.+.+...|    |.|++|||+|.++.+.+|.||+.+++.  .       
T Consensus        86 ~i~~g~h~D~~eldaas~~~Vd~iR----eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP--P-------  152 (618)
T PRK14951         86 DIDSGRFVDYTELDAASNRGVDEVQ----QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP--P-------  152 (618)
T ss_pred             HHHcCCCCceeecCcccccCHHHHH----HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC--C-------
Confidence                 01123334432211111111    3334444334    679999999999999999999999987  4       


Q ss_pred             EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 036633          339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRN  418 (550)
Q Consensus       339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l  418 (550)
                          .+++||++|+-.                     ....+.+++|| .+|.|.   +++.+++...+...+.+     
T Consensus       153 ----~~~~fIL~Ttd~---------------------~kil~TIlSRc-~~~~f~---~Ls~eei~~~L~~i~~~-----  198 (618)
T PRK14951        153 ----EYLKFVLATTDP---------------------QKVPVTVLSRC-LQFNLR---PMAPETVLEHLTQVLAA-----  198 (618)
T ss_pred             ----CCeEEEEEECCc---------------------hhhhHHHHHhc-eeeecC---CCCHHHHHHHHHHHHHH-----
Confidence                556778777532                     23455699999 899999   99999999888877743     


Q ss_pred             ccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          419 NDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       419 ~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        .|+   .++++++++|+..+-   | +.|.+-+.+++
T Consensus       199 --egi---~ie~~AL~~La~~s~---G-slR~al~lLdq  228 (618)
T PRK14951        199 --ENV---PAEPQALRLLARAAR---G-SMRDALSLTDQ  228 (618)
T ss_pred             --cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence              455   789999999998643   5 56777666653

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.70  E-value=5e-16  Score=168.36  Aligned_cols=186  Identities=18%  Similarity=0.242  Sum_probs=136.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------  267 (550)
                      ..++||++++..+..++...   +       -|..+||+||+|||||++|+++|+.+.....                  
T Consensus        21 ~dliGq~~vv~~L~~ai~~~---r-------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~   90 (507)
T PRK06645         21 AELQGQEVLVKVLSYTILND---R-------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCIS   90 (507)
T ss_pred             HHhcCcHHHHHHHHHHHHcC---C-------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHH
Confidence            56899999999998888765   1       2479999999999999999999999975210                  


Q ss_pred             ----CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeE
Q 036633          268 ----NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA  339 (550)
Q Consensus       268 ----~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~  339 (550)
                          ....++.+|.+.-.....+.    .+.+.....    .+.|++|||++.++...++.|++.+++.  .        
T Consensus        91 i~~~~h~Dv~eidaas~~~vd~Ir----~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep--p--------  156 (507)
T PRK06645         91 FNNHNHPDIIEIDAASKTSVDDIR----RIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP--P--------  156 (507)
T ss_pred             HhcCCCCcEEEeeccCCCCHHHHH----HHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc--C--------
Confidence                01133444432221111121    233333333    4579999999999999999999999987  5        


Q ss_pred             eecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 036633          340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNN  419 (550)
Q Consensus       340 vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~  419 (550)
                         .+++||++|+..                     ..+.+.+.+|| ..+.|.   +++.+++..++...+.+      
T Consensus       157 ---~~~vfI~aTte~---------------------~kI~~tI~SRc-~~~ef~---~ls~~el~~~L~~i~~~------  202 (507)
T PRK06645        157 ---PHIIFIFATTEV---------------------QKIPATIISRC-QRYDLR---RLSFEEIFKLLEYITKQ------  202 (507)
T ss_pred             ---CCEEEEEEeCCh---------------------HHhhHHHHhcc-eEEEcc---CCCHHHHHHHHHHHHHH------
Confidence               567777776532                     23566799999 799999   99999999999888854      


Q ss_pred             cCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          420 DSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       420 ~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                       .|+   .++++++++|+..+.   | +.|.+-+.+++
T Consensus       203 -egi---~ie~eAL~~Ia~~s~---G-slR~al~~Ldk  232 (507)
T PRK06645        203 -ENL---KTDIEALRIIAYKSE---G-SARDAVSILDQ  232 (507)
T ss_pred             -cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence             455   789999999998543   5 66877777775

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.70  E-value=1.8e-16  Score=155.01  Aligned_cols=201  Identities=17%  Similarity=0.144  Sum_probs=142.7

Q ss_pred             HHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          199 RVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       199 ~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      .+....-..++||+++++.+.-.+..+   +    ..+.+ -++||+||||.|||+||..||+.+..      ++-....
T Consensus        19 ~lRP~~l~efiGQ~~vk~~L~ifI~AA---k----~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv------n~k~tsG   85 (332)
T COG2255          19 SLRPKTLDEFIGQEKVKEQLQIFIKAA---K----KRGEALDHVLLFGPPGLGKTTLAHIIANELGV------NLKITSG   85 (332)
T ss_pred             ccCcccHHHhcChHHHHHHHHHHHHHH---H----hcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC------CeEeccc
Confidence            343444467899999999998888876   2    12233 89999999999999999999999977      4443333


Q ss_pred             CCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC------CeEeecCCeEEE-Ee
Q 036633          278 GNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG------IAAFDLTNTLII-MT  350 (550)
Q Consensus       278 s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~------g~~vd~~~~iiI-~T  350 (550)
                      ..+..+..   +.+.||.   -.|+.|+|+||||.++|.+-..|+.+||+-.+- +.-+      ...+|...-.+| +|
T Consensus        86 p~leK~gD---laaiLt~---Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lD-I~IG~gp~Arsv~ldLppFTLIGAT  158 (332)
T COG2255          86 PALEKPGD---LAAILTN---LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLD-IIIGKGPAARSIRLDLPPFTLIGAT  158 (332)
T ss_pred             ccccChhh---HHHHHhc---CCcCCeEEEehhhhcChhHHHHhhhhhhheeEE-EEEccCCccceEeccCCCeeEeeec
Confidence            33322222   2223332   267899999999999999999999999987322 2222      134565554444 44


Q ss_pred             CCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCH
Q 036633          351 SDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPST  430 (550)
Q Consensus       351 sN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~  430 (550)
                      |..|                      .+..+|..||..+..+.   -++.+|+..|+.+.-..       .   .+.+++
T Consensus       159 Tr~G----------------------~lt~PLrdRFGi~~rle---fY~~~eL~~Iv~r~a~~-------l---~i~i~~  203 (332)
T COG2255         159 TRAG----------------------MLTNPLRDRFGIIQRLE---FYTVEELEEIVKRSAKI-------L---GIEIDE  203 (332)
T ss_pred             cccc----------------------cccchhHHhcCCeeeee---cCCHHHHHHHHHHHHHH-------h---CCCCCh
Confidence            4443                      56777999999888999   99999999999875522       2   568999


Q ss_pred             HHHHHHHhcCc--ccCCCcccHHHHHHc
Q 036633          431 SALVHIASNAA--RKYGQNGEGLKRWMD  456 (550)
Q Consensus       431 ~a~~~L~~~~~--~~~GaN~R~L~~~i~  456 (550)
                      ++...|+..+-  |+..-  |-|+|+-+
T Consensus       204 ~~a~eIA~rSRGTPRIAn--RLLrRVRD  229 (332)
T COG2255         204 EAALEIARRSRGTPRIAN--RLLRRVRD  229 (332)
T ss_pred             HHHHHHHHhccCCcHHHH--HHHHHHHH
Confidence            99999998765  66664  66665544

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.69  E-value=4.1e-16  Score=170.92  Aligned_cols=185  Identities=20%  Similarity=0.264  Sum_probs=134.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC-CC---------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN-DN---------------  268 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~---------------  268 (550)
                      +.|+||+++++.+.+++...           +. ..+||+||+|||||++|+++|+.++... ..               
T Consensus        16 ~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~   84 (527)
T PRK14969         16 SELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS   84 (527)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence            56899999999999988865           33 6789999999999999999999997521 00               


Q ss_pred             --CCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          269 --DNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       269 --~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                        ...++.+|.+.-.....+.    .+.+.+...    ++.|++|||+|+++.+.+|.||+.+++.  .           
T Consensus        85 ~~~~d~~ei~~~~~~~vd~ir----~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep--p-----------  147 (527)
T PRK14969         85 GRFVDLIEVDAASNTQVDAMR----ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP--P-----------  147 (527)
T ss_pred             CCCCceeEeeccccCCHHHHH----HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC--C-----------
Confidence              1123444433221111121    233333333    3579999999999999999999999986  4           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                      .+++||++|+-.                     ..+.+.+++|| .++.|.   +++.+++...+...+.+       .|
T Consensus       148 ~~~~fIL~t~d~---------------------~kil~tI~SRc-~~~~f~---~l~~~~i~~~L~~il~~-------eg  195 (527)
T PRK14969        148 EHVKFILATTDP---------------------QKIPVTVLSRC-LQFNLK---QMPPPLIVSHLQHILEQ-------EN  195 (527)
T ss_pred             CCEEEEEEeCCh---------------------hhCchhHHHHH-HHHhcC---CCCHHHHHHHHHHHHHH-------cC
Confidence            556677777532                     34566799999 899999   99999999888777743       45


Q ss_pred             CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +   .++++++..|+..+.   | +.|..-+.+++
T Consensus       196 i---~~~~~al~~la~~s~---G-slr~al~lldq  223 (527)
T PRK14969        196 I---PFDATALQLLARAAA---G-SMRDALSLLDQ  223 (527)
T ss_pred             C---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            5   789999999998643   5 56777666664

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.69  E-value=7.3e-16  Score=167.67  Aligned_cols=186  Identities=20%  Similarity=0.254  Sum_probs=137.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-----------------CC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-----------------DN  268 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-----------------~~  268 (550)
                      +.|+||++++..+..++...   +       -|..+||+||||||||++|+++|+.++..+                 ..
T Consensus        14 ~dvvGq~~v~~~L~~~i~~~---~-------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~   83 (504)
T PRK14963         14 DEVVGQEHVKEVLLAALRQG---R-------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA   83 (504)
T ss_pred             HHhcChHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence            46899999999998888865   1       236789999999999999999999997411                 11


Q ss_pred             CCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633          269 DNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTN  344 (550)
Q Consensus       269 ~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~  344 (550)
                      ...++.+|.+.......+    -.+.+.+..    .++.||+|||++.++...++.|++.+++.  .           .+
T Consensus        84 h~dv~el~~~~~~~vd~i----R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep--~-----------~~  146 (504)
T PRK14963         84 HPDVLEIDAASNNSVEDV----RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEP--P-----------EH  146 (504)
T ss_pred             CCceEEecccccCCHHHH----HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhC--C-----------CC
Confidence            223555664422111111    133333333    34569999999999999999999999987  4           45


Q ss_pred             eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633          345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV  424 (550)
Q Consensus       345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~  424 (550)
                      +++|+++|..                     ..+.+.+.+|+ .++.|.   |++.+++...+...+.+       .|+ 
T Consensus       147 t~~Il~t~~~---------------------~kl~~~I~SRc-~~~~f~---~ls~~el~~~L~~i~~~-------egi-  193 (504)
T PRK14963        147 VIFILATTEP---------------------EKMPPTILSRT-QHFRFR---RLTEEEIAGKLRRLLEA-------EGR-  193 (504)
T ss_pred             EEEEEEcCCh---------------------hhCChHHhcce-EEEEec---CCCHHHHHHHHHHHHHH-------cCC-
Confidence            6788877642                     35677899999 799999   99999999998888754       555 


Q ss_pred             cccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        .++++++++|+..+-   | +.|.+.+.+++
T Consensus       194 --~i~~~Al~~ia~~s~---G-dlR~aln~Lek  220 (504)
T PRK14963        194 --EAEPEALQLVARLAD---G-AMRDAESLLER  220 (504)
T ss_pred             --CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence              779999999998653   5 66777666664

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.69  E-value=6.8e-16  Score=168.55  Aligned_cols=187  Identities=19%  Similarity=0.247  Sum_probs=136.0

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-----------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-----------------  267 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-----------------  267 (550)
                      -..++||+++++.+.+++...   +       -|.++||+||+|||||++|+++|+.+...+.                 
T Consensus        15 F~dIIGQe~iv~~L~~aI~~~---r-------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~   84 (605)
T PRK05896         15 FKQIIGQELIKKILVNAILNN---K-------LTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINT   84 (605)
T ss_pred             HHHhcCcHHHHHHHHHHHHcC---C-------CCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHc
Confidence            356899999999999888765   1       2378999999999999999999999975210                 


Q ss_pred             -CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          268 -NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       268 -~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                       ....++.+|.+.......+.    .+.+.+...    ++.|++|||++.++.+.++.|+..+++.  .           
T Consensus        85 ~~h~DiieIdaas~igVd~IR----eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP--p-----------  147 (605)
T PRK05896         85 NQSVDIVELDAASNNGVDEIR----NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP--P-----------  147 (605)
T ss_pred             CCCCceEEeccccccCHHHHH----HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC--C-----------
Confidence             01123444432211111111    333333333    4579999999999999999999999987  5           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                      .++++|++|+..                     ..+.+.+.+|| .++.|.   |++.+++...+...+.+       .|
T Consensus       148 ~~tvfIL~Tt~~---------------------~KLl~TI~SRc-q~ieF~---~Ls~~eL~~~L~~il~k-------eg  195 (605)
T PRK05896        148 KHVVFIFATTEF---------------------QKIPLTIISRC-QRYNFK---KLNNSELQELLKSIAKK-------EK  195 (605)
T ss_pred             CcEEEEEECCCh---------------------HhhhHHHHhhh-hhcccC---CCCHHHHHHHHHHHHHH-------cC
Confidence            567788877642                     24567799999 799999   99999999888877743       45


Q ss_pred             CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +   .++++++..|+..+.   | +.|.+.+.+++
T Consensus       196 i---~Is~eal~~La~lS~---G-dlR~AlnlLek  223 (605)
T PRK05896        196 I---KIEDNAIDKIADLAD---G-SLRDGLSILDQ  223 (605)
T ss_pred             C---CCCHHHHHHHHHHcC---C-cHHHHHHHHHH
Confidence            4   789999999998653   5 56777777764

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.69  E-value=7.1e-16  Score=169.22  Aligned_cols=185  Identities=17%  Similarity=0.207  Sum_probs=133.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------------C
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------D  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------~  267 (550)
                      +.|+||++++..+.+++...   +       -+.++||+||+|||||++|+++|+.++...                  .
T Consensus        16 ~dIiGQe~v~~~L~~ai~~~---r-------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g   85 (624)
T PRK14959         16 AEVAGQETVKAILSRAAQEN---R-------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQG   85 (624)
T ss_pred             HHhcCCHHHHHHHHHHHHcC---C-------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcC
Confidence            56899999999998888765   1       237999999999999999999999998521                  0


Q ss_pred             CCCceeEEecCCCCchhhhhhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633          268 NDNHLIHFDMGNYTELESIKHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      .+..++.+|.+.......+.    .+.+.+.    ..++.||+|||+++++.+.++.|++.+++.  .           .
T Consensus        86 ~hpDv~eId~a~~~~Id~iR----~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP--~-----------~  148 (624)
T PRK14959         86 MHVDVVEIDGASNRGIDDAK----RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP--P-----------A  148 (624)
T ss_pred             CCCceEEEecccccCHHHHH----HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc--C-----------C
Confidence            11224555543211111122    2333333    245679999999999999999999999976  4           4


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      +++||++||..                     ..+.+.+.+|| .+|.|.   +++.+++..++...+..       .|+
T Consensus       149 ~~ifILaTt~~---------------------~kll~TI~SRc-q~i~F~---pLs~~eL~~~L~~il~~-------egi  196 (624)
T PRK14959        149 RVTFVLATTEP---------------------HKFPVTIVSRC-QHFTFT---RLSEAGLEAHLTKVLGR-------EGV  196 (624)
T ss_pred             CEEEEEecCCh---------------------hhhhHHHHhhh-hccccC---CCCHHHHHHHHHHHHHH-------cCC
Confidence            57788877742                     24556689999 789999   99999999888876642       444


Q ss_pred             ccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633          424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMD  456 (550)
Q Consensus       424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~  456 (550)
                         .+++++++.|+..+.   | +.|..-+.++
T Consensus       197 ---~id~eal~lIA~~s~---G-dlR~Al~lLe  222 (624)
T PRK14959        197 ---DYDPAAVRLIARRAA---G-SVRDSMSLLG  222 (624)
T ss_pred             ---CCCHHHHHHHHHHcC---C-CHHHHHHHHH
Confidence               789999999998653   5 4565555554

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.69  E-value=8e-16  Score=169.76  Aligned_cols=187  Identities=19%  Similarity=0.254  Sum_probs=138.5

Q ss_pred             hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC----------------
Q 036633          204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN----------------  266 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~----------------  266 (550)
                      --..|+||+++++.+.+++...           +. ..+||+||+|||||++|+.+|+.+....                
T Consensus        14 ~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i   82 (559)
T PRK05563         14 TFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI   82 (559)
T ss_pred             cHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence            3467999999999999998865           33 7899999999999999999999987521                


Q ss_pred             --CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEe
Q 036633          267 --DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF  340 (550)
Q Consensus       267 --~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~v  340 (550)
                        .....++.+|.+.......    +..+.+.+...    ++.|++|||+|.++.+.++.|++.+++.  .         
T Consensus        83 ~~g~~~dv~eidaas~~~vd~----ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep--p---------  147 (559)
T PRK05563         83 TNGSLMDVIEIDAASNNGVDE----IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP--P---------  147 (559)
T ss_pred             hcCCCCCeEEeeccccCCHHH----HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC--C---------
Confidence              0123455565532211111    22344444433    4679999999999999999999999987  5         


Q ss_pred             ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                        .+++||++|+..                     ..+.+.+.+|| ..+.|.   +++.+++...+...+.+       
T Consensus       148 --~~~ifIlatt~~---------------------~ki~~tI~SRc-~~~~f~---~~~~~ei~~~L~~i~~~-------  193 (559)
T PRK05563        148 --AHVIFILATTEP---------------------HKIPATILSRC-QRFDFK---RISVEDIVERLKYILDK-------  193 (559)
T ss_pred             --CCeEEEEEeCCh---------------------hhCcHHHHhHh-eEEecC---CCCHHHHHHHHHHHHHH-------
Confidence              567788877632                     34677899999 789999   99999999888777743       


Q ss_pred             CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .|+   .++++++..|+..+-   | +.|...+.+++
T Consensus       194 egi---~i~~~al~~ia~~s~---G-~~R~al~~Ldq  223 (559)
T PRK05563        194 EGI---EYEDEALRLIARAAE---G-GMRDALSILDQ  223 (559)
T ss_pred             cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            555   789999999998543   4 55777666664

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.68  E-value=6.6e-16  Score=171.17  Aligned_cols=187  Identities=18%  Similarity=0.214  Sum_probs=137.0

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-C----------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-D----------------  267 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~----------------  267 (550)
                      -+.|+||++++..+.+++...   +       -|..+||+||+|||||++|+++|+.++... .                
T Consensus        15 f~~iiGq~~v~~~L~~~i~~~---~-------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~   84 (576)
T PRK14965         15 FSDLTGQEHVSRTLQNAIDTG---R-------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE   84 (576)
T ss_pred             HHHccCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence            357999999999999988765   1       237889999999999999999999997511 0                


Q ss_pred             -CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          268 -NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       268 -~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                       +...++.+|.+.......+    ..+.+.+...    ++.|++|||+|.++...++.|++.||+.  .           
T Consensus        85 g~~~d~~eid~~s~~~v~~i----r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep--p-----------  147 (576)
T PRK14965         85 GRSVDVFEIDGASNTGVDDI----RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP--P-----------  147 (576)
T ss_pred             CCCCCeeeeeccCccCHHHH----HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC--C-----------
Confidence             1122444553322111122    2334444433    4579999999999999999999999987  5           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                      .+++||++||-.                     ..+.+.+++|| .+|.|.   +++.+++...+...+.+       .|
T Consensus       148 ~~~~fIl~t~~~---------------------~kl~~tI~SRc-~~~~f~---~l~~~~i~~~L~~i~~~-------eg  195 (576)
T PRK14965        148 PHVKFIFATTEP---------------------HKVPITILSRC-QRFDFR---RIPLQKIVDRLRYIADQ-------EG  195 (576)
T ss_pred             CCeEEEEEeCCh---------------------hhhhHHHHHhh-hhhhcC---CCCHHHHHHHHHHHHHH-------hC
Confidence            567788877642                     24556799999 799999   99999998888777743       45


Q ss_pred             CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +   .++++++..|+..+-   | +.|.+-+.+++
T Consensus       196 i---~i~~~al~~la~~a~---G-~lr~al~~Ldq  223 (576)
T PRK14965        196 I---SISDAALALVARKGD---G-SMRDSLSTLDQ  223 (576)
T ss_pred             C---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            5   789999999998653   4 55766666654

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.67  E-value=2.6e-15  Score=155.10  Aligned_cols=189  Identities=12%  Similarity=0.115  Sum_probs=137.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++||++++..+...+...          ..|..++|+||||+|||++|+++++.+..      +++.+|++. .....
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~----------~~~~~lll~G~~G~GKT~la~~l~~~~~~------~~~~i~~~~-~~~~~   83 (316)
T PHA02544         21 DECILPAADKETFKSIVKKG----------RIPNMLLHSPSPGTGKTTVAKALCNEVGA------EVLFVNGSD-CRIDF   83 (316)
T ss_pred             HHhcCcHHHHHHHHHHHhcC----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCc------cceEeccCc-ccHHH
Confidence            56899999999888887754          13478888999999999999999998865      788899887 22111


Q ss_pred             hhhHHhHHHHHHH-hCCCCeEEecccccc-CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhh
Q 036633          286 IKHFFDSLAALVK-KRPYSVVLFDKIEKA-NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVML  363 (550)
Q Consensus       286 ~s~liG~lt~al~-~~p~~VlllDEIeka-~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~  363 (550)
                      +...+..+..... ..++.||+|||++.+ ..+.++.|..++++.  .           +++.||+|||..         
T Consensus        84 i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~--~-----------~~~~~Ilt~n~~---------  141 (316)
T PHA02544         84 VRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY--S-----------KNCSFIITANNK---------  141 (316)
T ss_pred             HHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc--C-----------CCceEEEEcCCh---------
Confidence            1111112222111 134689999999999 777888888888875  4           456789999853         


Q ss_pred             hhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCccc
Q 036633          364 TATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARK  443 (550)
Q Consensus       364 ~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~  443 (550)
                                  ..+.|.+.+|| .++.|.   +++.++...++...+..+...+...|+   .++++++.+++..++  
T Consensus       142 ------------~~l~~~l~sR~-~~i~~~---~p~~~~~~~il~~~~~~~~~~~~~~~~---~i~~~al~~l~~~~~--  200 (316)
T PHA02544        142 ------------NGIIEPLRSRC-RVIDFG---VPTKEEQIEMMKQMIVRCKGILEAEGV---EVDMKVLAALVKKNF--  200 (316)
T ss_pred             ------------hhchHHHHhhc-eEEEeC---CCCHHHHHHHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhcC--
Confidence                        34668899999 689998   888888888888877776655555666   779999999998765  


Q ss_pred             CCCcccHHHHHHc
Q 036633          444 YGQNGEGLKRWMD  456 (550)
Q Consensus       444 ~GaN~R~L~~~i~  456 (550)
                       | +.|.+-+.++
T Consensus       201 -~-d~r~~l~~l~  211 (316)
T PHA02544        201 -P-DFRRTINELQ  211 (316)
T ss_pred             -C-CHHHHHHHHH
Confidence             3 3354444444

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.67  E-value=1.7e-15  Score=168.54  Aligned_cols=187  Identities=20%  Similarity=0.280  Sum_probs=133.5

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCC---------------C
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDN---------------D  269 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~---------------~  269 (550)
                      -..|+||+++++.+..++...   +       -|..+||+||+|||||++|+++|+.++.....               +
T Consensus        17 f~dIiGQe~~v~~L~~aI~~~---r-------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~   86 (725)
T PRK07133         17 FDDIVGQDHIVQTLKNIIKSN---K-------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS   86 (725)
T ss_pred             HHHhcCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC
Confidence            356899999999999988865   1       23788999999999999999999999762100               0


Q ss_pred             CceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633          270 NHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNT  345 (550)
Q Consensus       270 ~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~  345 (550)
                      -.++.+|.+.-.   .+. -+..+.+.+...    ++.|++|||++.++++.++.||+.|++.  .           .++
T Consensus        87 ~Dvieidaasn~---~vd-~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP--P-----------~~t  149 (725)
T PRK07133         87 LDIIEMDAASNN---GVD-EIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP--P-----------KHV  149 (725)
T ss_pred             CcEEEEeccccC---CHH-HHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC--C-----------Cce
Confidence            011222211100   011 022444555544    4579999999999999999999999987  5           556


Q ss_pred             EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                      ++|++|+..                     ..+.|.+++|| .++.|.   |++.+++...+...+.+       .|+  
T Consensus       150 ifILaTte~---------------------~KLl~TI~SRc-q~ieF~---~L~~eeI~~~L~~il~k-------egI--  195 (725)
T PRK07133        150 IFILATTEV---------------------HKIPLTILSRV-QRFNFR---RISEDEIVSRLEFILEK-------ENI--  195 (725)
T ss_pred             EEEEEcCCh---------------------hhhhHHHHhhc-eeEEcc---CCCHHHHHHHHHHHHHH-------cCC--
Confidence            777777532                     24567799999 799999   99999999888876643       455  


Q ss_pred             ccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          426 VCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                       .++++++..|+..+.   | +.|.+.+.+++
T Consensus       196 -~id~eAl~~LA~lS~---G-slR~AlslLek  222 (725)
T PRK07133        196 -SYEKNALKLIAKLSS---G-SLRDALSIAEQ  222 (725)
T ss_pred             -CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence             789999999988543   4 55766666553

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.67  E-value=2e-15  Score=163.98  Aligned_cols=186  Identities=18%  Similarity=0.245  Sum_probs=134.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CC----------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DN----------------  268 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~----------------  268 (550)
                      ..|+||+++++.+..++...   +       -|.++||+||+|+|||++|+++|+.+.... ..                
T Consensus        14 deiiGqe~v~~~L~~~I~~g---r-------l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~   83 (535)
T PRK08451         14 DELIGQESVSKTLSLALDNN---R-------LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALEN   83 (535)
T ss_pred             HHccCcHHHHHHHHHHHHcC---C-------CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhc
Confidence            56999999999999888765   1       337889999999999999999999997521 00                


Q ss_pred             -CCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633          269 -DNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       269 -~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                       +..++.+|.+.-.....+.    .+.+.....    ++.|++|||++.++++.++.||+.+++.  .           .
T Consensus        84 ~h~dv~eldaas~~gId~IR----elie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp--p-----------~  146 (535)
T PRK08451         84 RHIDIIEMDAASNRGIDDIR----ELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP--P-----------S  146 (535)
T ss_pred             CCCeEEEeccccccCHHHHH----HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc--C-----------C
Confidence             1123333322111111111    222222223    4579999999999999999999999987  5           5


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      +++||++|+-.                     ..+.|.+.+|+ .++.|.   |++.+++...+...+.+       .|+
T Consensus       147 ~t~FIL~ttd~---------------------~kL~~tI~SRc-~~~~F~---~Ls~~ei~~~L~~Il~~-------EGi  194 (535)
T PRK08451        147 YVKFILATTDP---------------------LKLPATILSRT-QHFRFK---QIPQNSIISHLKTILEK-------EGV  194 (535)
T ss_pred             ceEEEEEECCh---------------------hhCchHHHhhc-eeEEcC---CCCHHHHHHHHHHHHHH-------cCC
Confidence            67788877642                     24567899999 799999   99999999888777754       555


Q ss_pred             ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                         .++++++.+|+..+.   | +.|.+-+.+++
T Consensus       195 ---~i~~~Al~~Ia~~s~---G-dlR~alnlLdq  221 (535)
T PRK08451        195 ---SYEPEALEILARSGN---G-SLRDTLTLLDQ  221 (535)
T ss_pred             ---CCCHHHHHHHHHHcC---C-cHHHHHHHHHH
Confidence               789999999998653   5 56777777664

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.67  E-value=2.3e-15  Score=162.18  Aligned_cols=186  Identities=20%  Similarity=0.276  Sum_probs=134.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------  267 (550)
                      +.|+||++++..+.+++...   +       -|.++||+||+|+|||++|+++|+.++....                  
T Consensus        17 ~diiGq~~~v~~L~~~i~~~---~-------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~   86 (451)
T PRK06305         17 SEILGQDAVVAVLKNALRFN---R-------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISS   86 (451)
T ss_pred             HHhcCcHHHHHHHHHHHHcC---C-------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhc
Confidence            57999999999988888765   1       2378999999999999999999999976210                  


Q ss_pred             -CCCceeEEecCCCCchhhhhhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          268 -NDNHLIHFDMGNYTELESIKHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       268 -~~~~li~id~s~~~~~~~~s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                       .+-.++.++.+.......+.    .+.+.+.    ..++.||+|||+++++.+.++.|++++++.  .           
T Consensus        87 ~~~~d~~~i~g~~~~gid~ir----~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep--~-----------  149 (451)
T PRK06305         87 GTSLDVLEIDGASHRGIEDIR----QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP--P-----------  149 (451)
T ss_pred             CCCCceEEeeccccCCHHHHH----HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC--C-----------
Confidence             01123444432211111111    2233332    245689999999999999999999999986  4           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                      .++++|++||..                     ..+.+.+.+|+ .++.|.   +++.+++...+...+.+       .|
T Consensus       150 ~~~~~Il~t~~~---------------------~kl~~tI~sRc-~~v~f~---~l~~~el~~~L~~~~~~-------eg  197 (451)
T PRK06305        150 QHVKFFLATTEI---------------------HKIPGTILSRC-QKMHLK---RIPEETIIDKLALIAKQ-------EG  197 (451)
T ss_pred             CCceEEEEeCCh---------------------HhcchHHHHhc-eEEeCC---CCCHHHHHHHHHHHHHH-------cC
Confidence            456678777632                     24557799999 799999   99999999888776643       45


Q ss_pred             CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +   .+++++++.|+..+-   | |.|.+.+.+++
T Consensus       198 ~---~i~~~al~~L~~~s~---g-dlr~a~~~Lek  225 (451)
T PRK06305        198 I---ETSREALLPIARAAQ---G-SLRDAESLYDY  225 (451)
T ss_pred             C---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            5   789999999998653   5 66777666664

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.66  E-value=2.8e-15  Score=164.97  Aligned_cols=187  Identities=19%  Similarity=0.218  Sum_probs=134.2

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CC---------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DN---------------  268 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~---------------  268 (550)
                      -..|+||++++..+..++...   +       -|..+||+||+|+|||++|+++|+.++..+ ..               
T Consensus        15 f~diiGqe~iv~~L~~~i~~~---~-------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~   84 (563)
T PRK06647         15 FNSLEGQDFVVETLKHSIESN---K-------IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN   84 (563)
T ss_pred             HHHccCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence            357999999999999888865   1       237899999999999999999999997521 00               


Q ss_pred             --CCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          269 --DNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       269 --~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                        .-.++.+|.+.-   ..+..+. .+.+.+..    .++.|+++||++.++...++.||+.+++.  .           
T Consensus        85 ~~~~dv~~idgas~---~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep--p-----------  147 (563)
T PRK06647         85 DNSLDVIEIDGASN---TSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP--P-----------  147 (563)
T ss_pred             CCCCCeEEecCccc---CCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC--C-----------
Confidence              112334432211   1111111 22222232    44679999999999999999999999987  5           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                      .+++||++|+-.                     ..+.+.+.+|| .++.|.   +++.+++...+...+..       .|
T Consensus       148 ~~~vfI~~tte~---------------------~kL~~tI~SRc-~~~~f~---~l~~~el~~~L~~i~~~-------eg  195 (563)
T PRK06647        148 PYIVFIFATTEV---------------------HKLPATIKSRC-QHFNFR---LLSLEKIYNMLKKVCLE-------DQ  195 (563)
T ss_pred             CCEEEEEecCCh---------------------HHhHHHHHHhc-eEEEec---CCCHHHHHHHHHHHHHH-------cC
Confidence            567788877531                     23557799999 789999   99999998888776643       45


Q ss_pred             CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +   .++++++.+|+..+-   | +.|.+.+.+++
T Consensus       196 i---~id~eAl~lLa~~s~---G-dlR~alslLdk  223 (563)
T PRK06647        196 I---KYEDEALKWIAYKST---G-SVRDAYTLFDQ  223 (563)
T ss_pred             C---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            5   789999999998543   4 66877777764

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.65  E-value=4.7e-15  Score=154.23  Aligned_cols=187  Identities=20%  Similarity=0.315  Sum_probs=133.9

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++||++++..+..++...           ++.+++|+||||||||++|+++++.+++.+ ...+++.+|++++.....
T Consensus        15 ~~~~g~~~~~~~L~~~~~~~-----------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~~~~~~~   82 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDSP-----------NLPHLLVQGPPGSGKTAAVRALARELYGDP-WENNFTEFNVADFFDQGK   82 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhCC-----------CCceEEEECCCCCCHHHHHHHHHHHhcCcc-cccceEEechhhhhhcch
Confidence            45789999999988877644           334789999999999999999999997611 134678899887642110


Q ss_pred             --------hhhH-----------HhHHHHHH----Hh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCe
Q 036633          286 --------IKHF-----------FDSLAALV----KK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIA  338 (550)
Q Consensus       286 --------~s~l-----------iG~lt~al----~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~  338 (550)
                              ....           ...+.+.+    ..    .++.+|+|||++.++++.++.|+.++++.  .       
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~--~-------  153 (337)
T PRK12402         83 KYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY--S-------  153 (337)
T ss_pred             hhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc--c-------
Confidence                    0000           11122111    11    33569999999999999999999999876  4       


Q ss_pred             EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 036633          339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRN  418 (550)
Q Consensus       339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l  418 (550)
                          .++.||+|++..                     ..+.+.+.+|+ ..+.|.   |++.+++..++...+.+     
T Consensus       154 ----~~~~~Il~~~~~---------------------~~~~~~L~sr~-~~v~~~---~~~~~~~~~~l~~~~~~-----  199 (337)
T PRK12402        154 ----RTCRFIIATRQP---------------------SKLIPPIRSRC-LPLFFR---APTDDELVDVLESIAEA-----  199 (337)
T ss_pred             ----CCCeEEEEeCCh---------------------hhCchhhcCCc-eEEEec---CCCHHHHHHHHHHHHHH-----
Confidence                345577776632                     13445688998 789999   99999998888877643     


Q ss_pred             ccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633          419 NDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMD  456 (550)
Q Consensus       419 ~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~  456 (550)
                        .|+   .+++++++.|+..+-   | |.|.+.+.++
T Consensus       200 --~~~---~~~~~al~~l~~~~~---g-dlr~l~~~l~  228 (337)
T PRK12402        200 --EGV---DYDDDGLELIAYYAG---G-DLRKAILTLQ  228 (337)
T ss_pred             --cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHH
Confidence              555   689999999998652   6 7787766665

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.65  E-value=2.5e-15  Score=159.99  Aligned_cols=187  Identities=17%  Similarity=0.205  Sum_probs=132.1

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-----------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-----------------  267 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-----------------  267 (550)
                      -..|+||+.+++.+.+++...          +-|..+||+||+|||||++|+++|+.++....                 
T Consensus        15 ~~eiiGq~~~~~~L~~~~~~~----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c   84 (397)
T PRK14955         15 FADITAQEHITRTIQNSLRMG----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC   84 (397)
T ss_pred             HhhccChHHHHHHHHHHHHhC----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence            357999999999888887755          13367999999999999999999999976210                 


Q ss_pred             ---------CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccc
Q 036633          268 ---------NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKAT  334 (550)
Q Consensus       268 ---------~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~  334 (550)
                               .+-+++.+|.+.......+.    .+.+.+...    ++.||++||+++++...++.|+..+++.  .   
T Consensus        85 ~~c~~~~~~~~~n~~~~~~~~~~~id~Ir----~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep--~---  155 (397)
T PRK14955         85 ESCRDFDAGTSLNISEFDAASNNSVDDIR----LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP--P---  155 (397)
T ss_pred             HHHHHHhcCCCCCeEeecccccCCHHHHH----HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC--C---
Confidence                     00123334332211111111    333444433    4579999999999999999999999987  4   


Q ss_pred             cCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH
Q 036633          335 RGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET  414 (550)
Q Consensus       335 d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~  414 (550)
                              ..++||++++..                     ..+.+.+.+|+ .++.|.   |++.+++...+...+.. 
T Consensus       156 --------~~t~~Il~t~~~---------------------~kl~~tl~sR~-~~v~f~---~l~~~ei~~~l~~~~~~-  201 (397)
T PRK14955        156 --------PHAIFIFATTEL---------------------HKIPATIASRC-QRFNFK---RIPLEEIQQQLQGICEA-  201 (397)
T ss_pred             --------CCeEEEEEeCCh---------------------HHhHHHHHHHH-HHhhcC---CCCHHHHHHHHHHHHHH-
Confidence                    456677766531                     23446789999 799999   99999999888877643 


Q ss_pred             HHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          415 KRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       415 ~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                            .|+   .++++++++|+..+-   | |.|.+.+.+++
T Consensus       202 ------~g~---~i~~~al~~l~~~s~---g-~lr~a~~~L~k  231 (397)
T PRK14955        202 ------EGI---SVDADALQLIGRKAQ---G-SMRDAQSILDQ  231 (397)
T ss_pred             ------cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence                  444   789999999998643   4 56766665553

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.65  E-value=3.7e-15  Score=164.78  Aligned_cols=187  Identities=18%  Similarity=0.233  Sum_probs=135.1

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-CC--------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-ND--------------  269 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-~~--------------  269 (550)
                      -..|+||+++++.+.+++...   +       -|..+||+||+|||||++|+++|+.++..+. ..              
T Consensus        23 f~dliGq~~~v~~L~~~~~~g---r-------i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C   92 (598)
T PRK09111         23 FDDLIGQEAMVRTLTNAFETG---R-------IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHC   92 (598)
T ss_pred             HHHhcCcHHHHHHHHHHHHcC---C-------CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHH
Confidence            357999999999999998866   1       2478999999999999999999999975210 00              


Q ss_pred             --------CceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCC
Q 036633          270 --------NHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGI  337 (550)
Q Consensus       270 --------~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g  337 (550)
                              ..++.+|.+.......+.    .+.+.++..    ++.||+|||++.++...++.||+.|++.  .      
T Consensus        93 ~~i~~g~h~Dv~e~~a~s~~gvd~IR----eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP--p------  160 (598)
T PRK09111         93 QAIMEGRHVDVLEMDAASHTGVDDIR----EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP--P------  160 (598)
T ss_pred             HHHhcCCCCceEEecccccCCHHHHH----HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC--C------
Confidence                    112223222111111111    344444443    4679999999999999999999999986  4      


Q ss_pred             eEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 036633          338 AAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRR  417 (550)
Q Consensus       338 ~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~  417 (550)
                           .+++||++|+-.                     ....+.+.+|| .+|.|.   +++.+++...+...+.+    
T Consensus       161 -----~~~~fIl~tte~---------------------~kll~tI~SRc-q~~~f~---~l~~~el~~~L~~i~~k----  206 (598)
T PRK09111        161 -----PHVKFIFATTEI---------------------RKVPVTVLSRC-QRFDLR---RIEADVLAAHLSRIAAK----  206 (598)
T ss_pred             -----CCeEEEEEeCCh---------------------hhhhHHHHhhe-eEEEec---CCCHHHHHHHHHHHHHH----
Confidence                 456778777532                     12445689999 799999   99999999998887753    


Q ss_pred             hccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          418 NNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       418 l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                         .|+   .++++++++|+..+-   | +.|.+.+.+++
T Consensus       207 ---egi---~i~~eAl~lIa~~a~---G-dlr~al~~Ldk  236 (598)
T PRK09111        207 ---EGV---EVEDEALALIARAAE---G-SVRDGLSLLDQ  236 (598)
T ss_pred             ---cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence               455   789999999998643   4 56777777664

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.65  E-value=2.7e-15  Score=162.14  Aligned_cols=194  Identities=17%  Similarity=0.196  Sum_probs=130.3

Q ss_pred             CcccCcHHHHHHHHHHHhcch--hhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633          206 KRVFGQNDAIDVIFEALTKPK--AAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~--~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~  283 (550)
                      +.|.|.+.+++.+........  ....|+.   .|..+||+||||||||.+|+++|..+..      +|++++++.+...
T Consensus       228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~---~pkGILL~GPpGTGKTllAkaiA~e~~~------~~~~l~~~~l~~~  298 (489)
T CHL00195        228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLP---TPRGLLLVGIQGTGKSLTAKAIANDWQL------PLLRLDVGKLFGG  298 (489)
T ss_pred             HHhcCHHHHHHHHHHHHHHhhHHHHhcCCC---CCceEEEECCCCCcHHHHHHHHHHHhCC------CEEEEEhHHhccc
Confidence            357888888876665332110  0133443   3468999999999999999999999877      9999999865322


Q ss_pred             hh--hhhHHhHHHHHHHhCCCCeEEeccccccCH------------HHHHHHHHhhhhccccccccCCeEeecCCeEEEE
Q 036633          284 ES--IKHFFDSLAALVKKRPYSVVLFDKIEKANS------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIM  349 (550)
Q Consensus       284 ~~--~s~liG~lt~al~~~p~~VlllDEIeka~~------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~  349 (550)
                      ..  ....+..+....+....+||||||||++.+            .+++.|+..+++.  .           ++++||+
T Consensus       299 ~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~--~-----------~~V~vIa  365 (489)
T CHL00195        299 IVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK--K-----------SPVFVVA  365 (489)
T ss_pred             ccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC--C-----------CceEEEE
Confidence            10  001111222333333449999999997643            2556677777654  3           4578999


Q ss_pred             eCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 036633          350 TSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVC  427 (550)
Q Consensus       350 TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~  427 (550)
                      |||..                     ..++|+++  +|||.+|.+.   ..+.++...|+..++.+.       +.  -.
T Consensus       366 TTN~~---------------------~~Ld~allR~GRFD~~i~v~---lP~~~eR~~Il~~~l~~~-------~~--~~  412 (489)
T CHL00195        366 TANNI---------------------DLLPLEILRKGRFDEIFFLD---LPSLEEREKIFKIHLQKF-------RP--KS  412 (489)
T ss_pred             ecCCh---------------------hhCCHHHhCCCcCCeEEEeC---CcCHHHHHHHHHHHHhhc-------CC--Cc
Confidence            99964                     46788887  4999999999   779999999999998652       11  01


Q ss_pred             CCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          428 PSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       428 ~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .++.-++.|+..+.   |.+|.+|++++..
T Consensus       413 ~~~~dl~~La~~T~---GfSGAdI~~lv~e  439 (489)
T CHL00195        413 WKKYDIKKLSKLSN---KFSGAEIEQSIIE  439 (489)
T ss_pred             ccccCHHHHHhhcC---CCCHHHHHHHHHH
Confidence            22334566776432   4466899998885

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.65  E-value=3e-14  Score=159.01  Aligned_cols=201  Identities=18%  Similarity=0.197  Sum_probs=135.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      ..++||+.++..+...+...           .|.+++|+||||||||++|++++.......    ..+.+|+.+||+.+.
T Consensus       154 ~~iiGqs~~~~~l~~~ia~~-----------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~  222 (615)
T TIGR02903       154 SEIVGQERAIKALLAKVASP-----------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR  222 (615)
T ss_pred             HhceeCcHHHHHHHHHHhcC-----------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc
Confidence            45899999999887666433           456899999999999999999998774211    024589999998763


Q ss_pred             ch-hh-hhhHHhHH---------------------HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC--
Q 036633          282 EL-ES-IKHFFDSL---------------------AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG--  336 (550)
Q Consensus       282 ~~-~~-~s~liG~l---------------------t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--  336 (550)
                      .. .. ...++|..                     ...+....++||||||++.+++..|+.|+++++++.+. +.++  
T Consensus       223 ~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~-~~~~~~  301 (615)
T TIGR02903       223 WDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVE-FSSSYY  301 (615)
T ss_pred             CCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEE-eeccee
Confidence            11 11 11233311                     00112334689999999999999999999999998322 2111  


Q ss_pred             ---CeE-----------eecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHH
Q 036633          337 ---IAA-----------FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTT  402 (550)
Q Consensus       337 ---g~~-----------vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~  402 (550)
                         +..           ..-.+.++|.+|+...                    ..++|.|.+|| ..+.|.   ||+.++
T Consensus       302 ~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~--------------------~~l~~aLrSR~-~~i~~~---pls~ed  357 (615)
T TIGR02903       302 DPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP--------------------EEINPALRSRC-AEVFFE---PLTPED  357 (615)
T ss_pred             ccCCcccchhhhhhcccCccceEEEEEeccccc--------------------cccCHHHHhce-eEEEeC---CCCHHH
Confidence               000           0112244554444321                    34678899999 578899   999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          403 RLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       403 i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +..|+...+.+       .++   .+++++++.|..++|     ++|..-+.++.
T Consensus       358 i~~Il~~~a~~-------~~v---~ls~eal~~L~~ys~-----~gRraln~L~~  397 (615)
T TIGR02903       358 IALIVLNAAEK-------INV---HLAAGVEELIARYTI-----EGRKAVNILAD  397 (615)
T ss_pred             HHHHHHHHHHH-------cCC---CCCHHHHHHHHHCCC-----cHHHHHHHHHH
Confidence            99999987753       333   689999999999877     22544455554

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.65  E-value=4.6e-15  Score=155.59  Aligned_cols=187  Identities=20%  Similarity=0.271  Sum_probs=133.7

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-----------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-----------------  267 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-----------------  267 (550)
                      -..++||+.++..+...+...   +       -|.++||+||||+|||++|+.+++.+.....                 
T Consensus        13 ~~~iig~~~~~~~l~~~~~~~---~-------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~   82 (355)
T TIGR02397        13 FEDVIGQEHIVQTLKNAIKNG---R-------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS   82 (355)
T ss_pred             HhhccCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence            356899999999999888755   1       2378999999999999999999999875210                 


Q ss_pred             -CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          268 -NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       268 -~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                       .+..++.+|.+.......+.    .+.+.+...    ++.||++||++.++...++.|++.+++.  .           
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~--~-----------  145 (355)
T TIGR02397        83 GSSLDVIEIDAASNNGVDDIR----EILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP--P-----------  145 (355)
T ss_pred             CCCCCEEEeeccccCCHHHHH----HHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC--c-----------
Confidence             02235555544222211222    233333333    3469999999999999999999999875  4           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                      .++++|+++|..                     ..+.+.+.+|+ ..+.|.   |++.+++..++...+.+       .|
T Consensus       146 ~~~~lIl~~~~~---------------------~~l~~~l~sr~-~~~~~~---~~~~~~l~~~l~~~~~~-------~g  193 (355)
T TIGR02397       146 EHVVFILATTEP---------------------HKIPATILSRC-QRFDFK---RIPLEDIVERLKKILDK-------EG  193 (355)
T ss_pred             cceeEEEEeCCH---------------------HHHHHHHHhhe-eEEEcC---CCCHHHHHHHHHHHHHH-------cC
Confidence            456677777532                     12345688999 789999   99999999888887753       45


Q ss_pred             CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +   .++++++.+|+..+-   | +.|.+.+.+++
T Consensus       194 ~---~i~~~a~~~l~~~~~---g-~~~~a~~~lek  221 (355)
T TIGR02397       194 I---KIEDEALELIARAAD---G-SLRDALSLLDQ  221 (355)
T ss_pred             C---CCCHHHHHHHHHHcC---C-ChHHHHHHHHH
Confidence            5   789999999998542   4 55767666654

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.65  E-value=3.2e-15  Score=158.94  Aligned_cols=227  Identities=16%  Similarity=0.132  Sum_probs=151.5

Q ss_pred             HHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633          194 EERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI  273 (550)
Q Consensus       194 ~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li  273 (550)
                      .+++..+...|++.|+|++++++.+..++...             +++||.||||||||++|++||..+..   .. +|.
T Consensus         8 ~~~i~~l~~~l~~~i~gre~vI~lll~aalag-------------~hVLL~GpPGTGKT~LAraLa~~~~~---~~-~F~   70 (498)
T PRK13531          8 AERISRLSSALEKGLYERSHAIRLCLLAALSG-------------ESVFLLGPPGIAKSLIARRLKFAFQN---AR-AFE   70 (498)
T ss_pred             HHHHHHHHHHHhhhccCcHHHHHHHHHHHccC-------------CCEEEECCCChhHHHHHHHHHHHhcc---cC-cce
Confidence            46688899999999999999999988888755             69999999999999999999998765   32 666


Q ss_pred             EEecCCCCchhhhhhHHhHH--HH-----HH-HhCC-----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEe
Q 036633          274 HFDMGNYTELESIKHFFDSL--AA-----LV-KKRP-----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF  340 (550)
Q Consensus       274 ~id~s~~~~~~~~s~liG~l--t~-----al-~~~p-----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~v  340 (550)
                      .+++.-.+    .+.++|.+  ..     .. +..+     ..+||+|||.+++|.+|+.||++++++  . ++.+|+..
T Consensus        71 ~~~~~ftt----p~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er--~-~t~g~~~~  143 (498)
T PRK13531         71 YLMTRFST----PEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINER--R-FRNGAHEE  143 (498)
T ss_pred             eeeeeecC----cHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhC--e-EecCCeEE
Confidence            65554222    23556622  11     11 1111     248999999999999999999999999  7 77777777


Q ss_pred             ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC-HHHHHHHHHHHHH-------
Q 036633          341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL-DTTRLLLREWACE-------  412 (550)
Q Consensus       341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~-~e~i~~I~~~~l~-------  412 (550)
                      ...--+|+++||.-.+                  .+.|.+++++||-..|..+   |++ .++...++...-.       
T Consensus       144 ~lp~rfiv~ATN~LPE------------------~g~~leAL~DRFliri~vp---~l~~~~~e~~lL~~~~~~~~~~~~  202 (498)
T PRK13531        144 KIPMRLLVTASNELPE------------------ADSSLEALYDRMLIRLWLD---KVQDKANFRSMLTSQQDENDNPVP  202 (498)
T ss_pred             eCCCcEEEEECCCCcc------------------cCCchHHhHhhEEEEEECC---CCCchHHHHHHHHcccccccCCCc
Confidence            7777778888884221                  2578899999993334444   775 4555666543211       


Q ss_pred             --------HHHHHhccCCCccccCCHHHHHHHHhcC-----cc-cCCCcccHHHHHHcchhhHHHHHhhh
Q 036633          413 --------ETKRRNNDSKAVIVCPSTSALVHIASNA-----AR-KYGQNGEGLKRWMDQRPSADHVIDKF  468 (550)
Q Consensus       413 --------~~~~~l~~~~~~~l~~~~~a~~~L~~~~-----~~-~~GaN~R~L~~~i~~~~la~~~l~~~  468 (550)
                              ++ ..+...-- .+.+++.+.++|....     .. ...++-|....++.- .=|.+++.|.
T Consensus       203 ~~~vis~eel-~~lq~~v~-~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~-akA~A~l~GR  269 (498)
T PRK13531        203 ASLQITDEEY-QQWQKEIG-KITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRL-LQASAFFSGR  269 (498)
T ss_pred             ccCCCCHHHH-HHHHHHhc-ceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHH-HHHHHHHCCC
Confidence                    11 01111111 4678999999887632     11 111233666555553 3355566653

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.64  E-value=4.5e-15  Score=160.97  Aligned_cols=185  Identities=23%  Similarity=0.339  Sum_probs=133.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCC---------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDND---------------  269 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~---------------  269 (550)
                      ..++||++++..+.+++...           +. ..+||+||+|+|||++|+.+|+.++..+...               
T Consensus        16 ~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~   84 (486)
T PRK14953         16 KEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDK   84 (486)
T ss_pred             HHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhc
Confidence            56899999999999988865           34 6789999999999999999999997411010               


Q ss_pred             ---CceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          270 ---NHLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       270 ---~~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                         ..++.+|.+.-.....    +..+.+.+...|    +.|+++||++.++.+.++.|+..+++.  .           
T Consensus        85 g~~~d~~eidaas~~gvd~----ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep--p-----------  147 (486)
T PRK14953         85 GSFPDLIEIDAASNRGIDD----IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP--P-----------  147 (486)
T ss_pred             CCCCcEEEEeCccCCCHHH----HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC--C-----------
Confidence               1222333211110001    114445555444    469999999999999999999999987  4           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                      .++++|++|+-.                     ..+.+.+.+|+ ..+.|.   |++.+++..++...+..       .|
T Consensus       148 ~~~v~Il~tt~~---------------------~kl~~tI~SRc-~~i~f~---~ls~~el~~~L~~i~k~-------eg  195 (486)
T PRK14953        148 PRTIFILCTTEY---------------------DKIPPTILSRC-QRFIFS---KPTKEQIKEYLKRICNE-------EK  195 (486)
T ss_pred             CCeEEEEEECCH---------------------HHHHHHHHHhc-eEEEcC---CCCHHHHHHHHHHHHHH-------cC
Confidence            456677666521                     23456789999 799999   99999999888877753       55


Q ss_pred             CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +   .++++++++|+..+-   | |.|.+-+.+++
T Consensus       196 i---~id~~al~~La~~s~---G-~lr~al~~Ldk  223 (486)
T PRK14953        196 I---EYEEKALDLLAQASE---G-GMRDAASLLDQ  223 (486)
T ss_pred             C---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            5   789999999998543   5 66877777764

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.63  E-value=8.7e-15  Score=162.10  Aligned_cols=187  Identities=17%  Similarity=0.214  Sum_probs=132.5

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-----------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-----------------  267 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-----------------  267 (550)
                      -+.|+||++++..+.+++...          +-|..+||+||+|||||++|+.+|+.++....                 
T Consensus        15 f~eivGQe~i~~~L~~~i~~~----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C   84 (620)
T PRK14954         15 FADITAQEHITHTIQNSLRMD----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC   84 (620)
T ss_pred             HHHhcCcHHHHHHHHHHHHcC----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence            357899999999988888754          13368999999999999999999999976210                 


Q ss_pred             ---------CCCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccc
Q 036633          268 ---------NDNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKAT  334 (550)
Q Consensus       268 ---------~~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~  334 (550)
                               .+-+++.+|.+.......+.    .+.+.+..    .++.||++||+++++...++.|++.|++.  .   
T Consensus        85 ~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir----~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP--p---  155 (620)
T PRK14954         85 ESCRDFDAGTSLNISEFDAASNNSVDDIR----QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP--P---  155 (620)
T ss_pred             HHHHHHhccCCCCeEEecccccCCHHHHH----HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC--C---
Confidence                     01123334332211111111    23344433    34579999999999999999999999986  4   


Q ss_pred             cCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH
Q 036633          335 RGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET  414 (550)
Q Consensus       335 d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~  414 (550)
                              ..++||++++-.                     ..+.+.+.+|+ .+|.|.   +++.+++...+...+.. 
T Consensus       156 --------~~tv~IL~t~~~---------------------~kLl~TI~SRc-~~vef~---~l~~~ei~~~L~~i~~~-  201 (620)
T PRK14954        156 --------PHAIFIFATTEL---------------------HKIPATIASRC-QRFNFK---RIPLDEIQSQLQMICRA-  201 (620)
T ss_pred             --------CCeEEEEEeCCh---------------------hhhhHHHHhhc-eEEecC---CCCHHHHHHHHHHHHHH-
Confidence                    456677766531                     24456799999 899999   99999998888776643 


Q ss_pred             HHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          415 KRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       415 ~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                            .|+   .++++++++|+..+-   | |.|.+.+.+++
T Consensus       202 ------egi---~I~~eal~~La~~s~---G-dlr~al~eLeK  231 (620)
T PRK14954        202 ------EGI---QIDADALQLIARKAQ---G-SMRDAQSILDQ  231 (620)
T ss_pred             ------cCC---CCCHHHHHHHHHHhC---C-CHHHHHHHHHH
Confidence                  454   789999999998543   4 55766666553

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.63  E-value=7.9e-15  Score=163.16  Aligned_cols=187  Identities=20%  Similarity=0.316  Sum_probs=137.5

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------  266 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------  266 (550)
                      -+.|+||+++++.+.+++...   +       -|..+||+||+|+|||++|+++|+.+....                  
T Consensus        16 f~~viGq~~~~~~L~~~i~~~---~-------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~   85 (614)
T PRK14971         16 FESVVGQEALTTTLKNAIATN---K-------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFN   85 (614)
T ss_pred             HHHhcCcHHHHHHHHHHHHcC---C-------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHh
Confidence            357999999999999998865   1       237899999999999999999999987310                  


Q ss_pred             -CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee
Q 036633          267 -DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD  341 (550)
Q Consensus       267 -~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd  341 (550)
                       ..+-+++.+|.+.......+.    .+.+.+...|    +.|++|||++.++.+.++.|+++|++.  .          
T Consensus        86 ~~~~~n~~~ld~~~~~~vd~Ir----~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep--p----------  149 (614)
T PRK14971         86 EQRSYNIHELDAASNNSVDDIR----NLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP--P----------  149 (614)
T ss_pred             cCCCCceEEecccccCCHHHHH----HHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC--C----------
Confidence             012345566654322111221    2233334333    679999999999999999999999986  4          


Q ss_pred             cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                       .+++||++|+..                     ..+.|.+.+|| .++.|.   +++.+++...+...+.+       .
T Consensus       150 -~~tifIL~tt~~---------------------~kIl~tI~SRc-~iv~f~---~ls~~ei~~~L~~ia~~-------e  196 (614)
T PRK14971        150 -SYAIFILATTEK---------------------HKILPTILSRC-QIFDFN---RIQVADIVNHLQYVASK-------E  196 (614)
T ss_pred             -CCeEEEEEeCCc---------------------hhchHHHHhhh-heeecC---CCCHHHHHHHHHHHHHH-------c
Confidence             567788877632                     35667899999 799999   99999999888876643       5


Q ss_pred             CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      |+   .++++++++|+..+-   | +.|.+.+.+++
T Consensus       197 gi---~i~~~al~~La~~s~---g-dlr~al~~Lek  225 (614)
T PRK14971        197 GI---TAEPEALNVIAQKAD---G-GMRDALSIFDQ  225 (614)
T ss_pred             CC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            55   789999999998543   4 55766666654

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.63  E-value=1.3e-14  Score=153.02  Aligned_cols=189  Identities=19%  Similarity=0.247  Sum_probs=132.9

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC----CCCceeEEecCCC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND----NDNHLIHFDMGNY  280 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~----~~~~li~id~s~~  280 (550)
                      -+.++||+.++..+.+.+...          .-|.++||+||||+|||++|+++++.++..+.    ..-++..+++...
T Consensus        16 ~~~iig~~~~~~~l~~~i~~~----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~   85 (367)
T PRK14970         16 FDDVVGQSHITNTLLNAIENN----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA   85 (367)
T ss_pred             HHhcCCcHHHHHHHHHHHHcC----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc
Confidence            356899999999988888755          13379999999999999999999999875210    0112223333221


Q ss_pred             CchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChH
Q 036633          281 TELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDE  356 (550)
Q Consensus       281 ~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~  356 (550)
                      .. ..+. -+..+.+.+...    ++.||++||++.+++..++.|+..+++.  .           .++++|+++|..  
T Consensus        86 ~~-~~~~-~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~--~-----------~~~~~Il~~~~~--  148 (367)
T PRK14970         86 SN-NSVD-DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP--P-----------AHAIFILATTEK--  148 (367)
T ss_pred             cC-CCHH-HHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC--C-----------CceEEEEEeCCc--
Confidence            10 0111 122333333333    3469999999999999999999999875  4           456777777632  


Q ss_pred             HHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633          357 QVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI  436 (550)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L  436 (550)
                                         ..+.|.+.+|+ .++.|.   |++.+++..++...+.+       .|+   .++++++++|
T Consensus       149 -------------------~kl~~~l~sr~-~~v~~~---~~~~~~l~~~l~~~~~~-------~g~---~i~~~al~~l  195 (367)
T PRK14970        149 -------------------HKIIPTILSRC-QIFDFK---RITIKDIKEHLAGIAVK-------EGI---KFEDDALHII  195 (367)
T ss_pred             -------------------ccCCHHHHhcc-eeEecC---CccHHHHHHHHHHHHHH-------cCC---CCCHHHHHHH
Confidence                               35667899999 789999   99999999888877743       555   7899999999


Q ss_pred             HhcCcccCCCcccHHHHHHcc
Q 036633          437 ASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       437 ~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +..+-   | |.|.+.+.+++
T Consensus       196 ~~~~~---g-dlr~~~~~lek  212 (367)
T PRK14970        196 AQKAD---G-ALRDALSIFDR  212 (367)
T ss_pred             HHhCC---C-CHHHHHHHHHH
Confidence            98542   4 55766666664

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.4e-15  Score=160.36  Aligned_cols=189  Identities=22%  Similarity=0.296  Sum_probs=139.1

Q ss_pred             cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      .+.|=|+++.+..+-.++.+...     .+.|+.   .|.-+||+||||||||++|+++|.....      +|+.+.+.+
T Consensus       433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~---ppkGVLlyGPPGC~KT~lAkalAne~~~------nFlsvkgpE  503 (693)
T KOG0730|consen  433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGIS---PPKGVLLYGPPGCGKTLLAKALANEAGM------NFLSVKGPE  503 (693)
T ss_pred             hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCC---CCceEEEECCCCcchHHHHHHHhhhhcC------CeeeccCHH
Confidence            34566788888888888766532     244553   2378999999999999999999999877      999998776


Q ss_pred             CCchhhhhhHHh-------HHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEee
Q 036633          280 YTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFD  341 (550)
Q Consensus       280 ~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd  341 (550)
                      +     .++++|       .+-...|..+-+||||||||...           ..|++.||.-||..  .         .
T Consensus       504 L-----~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~--e---------~  567 (693)
T KOG0730|consen  504 L-----FSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL--E---------A  567 (693)
T ss_pred             H-----HHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc--c---------c
Confidence            5     556666       22233344444999999998542           35788888888655  2         1


Q ss_pred             cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 036633          342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNN  419 (550)
Q Consensus       342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~  419 (550)
                      -+|++||.+||..                     ..++|+++.  |+|.+|.+.   +.+.+....|++..+.       
T Consensus       568 ~k~V~ViAATNRp---------------------d~ID~ALlRPGRlD~iiyVp---lPD~~aR~~Ilk~~~k-------  616 (693)
T KOG0730|consen  568 LKNVLVIAATNRP---------------------DMIDPALLRPGRLDRIIYVP---LPDLEARLEILKQCAK-------  616 (693)
T ss_pred             cCcEEEEeccCCh---------------------hhcCHHHcCCcccceeEeec---CccHHHHHHHHHHHHh-------
Confidence            2789999999985                     467889996  999999999   8888889999888773       


Q ss_pred             cCCCccccCCHH-HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          420 DSKAVIVCPSTS-ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       420 ~~~~~~l~~~~~-a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        +   ..++++ -++.|+...-   |.+|.+|..+++.
T Consensus       617 --k---mp~~~~vdl~~La~~T~---g~SGAel~~lCq~  647 (693)
T KOG0730|consen  617 --K---MPFSEDVDLEELAQATE---GYSGAEIVAVCQE  647 (693)
T ss_pred             --c---CCCCccccHHHHHHHhc---cCChHHHHHHHHH
Confidence              2   255665 3677776322   2245889999987

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.61  E-value=1.3e-14  Score=161.56  Aligned_cols=188  Identities=18%  Similarity=0.250  Sum_probs=133.8

Q ss_pred             hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC--C-------------
Q 036633          204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND--N-------------  268 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~--~-------------  268 (550)
                      --+.|+||++++..+..++...   +       .+..+||+||+|+|||++|+.+|+.++....  .             
T Consensus        14 ~~~eiiGq~~~~~~L~~~i~~~---~-------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i   83 (585)
T PRK14950         14 TFAELVGQEHVVQTLRNAIAEG---R-------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI   83 (585)
T ss_pred             CHHHhcCCHHHHHHHHHHHHhC---C-------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence            3457999999999998888765   1       2367899999999999999999999874110  0             


Q ss_pred             ----CCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEe
Q 036633          269 ----DNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF  340 (550)
Q Consensus       269 ----~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~v  340 (550)
                          .-.++.+|.+.......+.    .+.+.+...    .+.||+|||+++++.+.++.|++.+++.  .         
T Consensus        84 ~~~~~~d~~~i~~~~~~~vd~ir----~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep--p---------  148 (585)
T PRK14950         84 AEGSAVDVIEMDAASHTSVDDAR----EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP--P---------  148 (585)
T ss_pred             hcCCCCeEEEEeccccCCHHHHH----HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC--C---------
Confidence                0123444432221111111    333333333    3579999999999999999999999987  4         


Q ss_pred             ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                        .+++||++++.-                     ..+.+.+.+|+ ..+.|.   +++..++..++...+.+       
T Consensus       149 --~~tv~Il~t~~~---------------------~kll~tI~SR~-~~i~f~---~l~~~el~~~L~~~a~~-------  194 (585)
T PRK14950        149 --PHAIFILATTEV---------------------HKVPATILSRC-QRFDFH---RHSVADMAAHLRKIAAA-------  194 (585)
T ss_pred             --CCeEEEEEeCCh---------------------hhhhHHHHhcc-ceeeCC---CCCHHHHHHHHHHHHHH-------
Confidence              456777776531                     23446688999 789999   99999998888776643       


Q ss_pred             CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .|+   .++++++.+|+..+.   | |.|.+.+.+++
T Consensus       195 egl---~i~~eal~~La~~s~---G-dlr~al~~Lek  224 (585)
T PRK14950        195 EGI---NLEPGALEAIARAAT---G-SMRDAENLLQQ  224 (585)
T ss_pred             cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            455   789999999998543   5 66877777764

>PRK04195 replication factor C large subunit; Provisional

Probab=99.61  E-value=1.1e-14  Score=158.92  Aligned_cols=183  Identities=19%  Similarity=0.215  Sum_probs=135.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCC-CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQ-LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~-p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ..++||+.++..+...+..+   ..|     + +.++||+||||||||++|+++|+.+..      +++.+|.+.+....
T Consensus        14 ~dlvg~~~~~~~l~~~l~~~---~~g-----~~~~~lLL~GppG~GKTtla~ala~el~~------~~ielnasd~r~~~   79 (482)
T PRK04195         14 SDVVGNEKAKEQLREWIESW---LKG-----KPKKALLLYGPPGVGKTSLAHALANDYGW------EVIELNASDQRTAD   79 (482)
T ss_pred             HHhcCCHHHHHHHHHHHHHH---hcC-----CCCCeEEEECCCCCCHHHHHHHHHHHcCC------CEEEEcccccccHH
Confidence            34899999999999998876   322     3 379999999999999999999999866      89999999877655


Q ss_pred             hhhhHHhHHHH--HHHhCCCCeEEeccccccCH----HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHH
Q 036633          285 SIKHFFDSLAA--LVKKRPYSVVLFDKIEKANS----SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQV  358 (550)
Q Consensus       285 ~~s~liG~lt~--al~~~p~~VlllDEIeka~~----~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~  358 (550)
                      .+..+++....  .+...++.||+|||++.++.    ..++.|+.++++.  .             +.||+++|...   
T Consensus        80 ~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~--~-------------~~iIli~n~~~---  141 (482)
T PRK04195         80 VIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA--K-------------QPIILTANDPY---  141 (482)
T ss_pred             HHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC--C-------------CCEEEeccCcc---
Confidence            55555542211  11112567999999999876    6788899998866  2             23677777531   


Q ss_pred             HHhhhhhhHhhHHHHhccCCCh-hhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHH
Q 036633          359 YEVMLTATYGRVNEVTGSLFKP-SLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIA  437 (550)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~f~p-~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~  437 (550)
                                        ...+ .+.+|+ ..|.|.   +++.+++..++...+..       .|+   .+++++++.|+
T Consensus       142 ------------------~~~~k~Lrsr~-~~I~f~---~~~~~~i~~~L~~i~~~-------egi---~i~~eaL~~Ia  189 (482)
T PRK04195        142 ------------------DPSLRELRNAC-LMIEFK---RLSTRSIVPVLKRICRK-------EGI---ECDDEALKEIA  189 (482)
T ss_pred             ------------------ccchhhHhccc-eEEEec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHH
Confidence                              2233 677888 799999   99999999988887743       455   78999999999


Q ss_pred             hcCcccCCCcccHHHHHHc
Q 036633          438 SNAARKYGQNGEGLKRWMD  456 (550)
Q Consensus       438 ~~~~~~~GaN~R~L~~~i~  456 (550)
                      ..+.   | +.|.+-+.++
T Consensus       190 ~~s~---G-DlR~ain~Lq  204 (482)
T PRK04195        190 ERSG---G-DLRSAINDLQ  204 (482)
T ss_pred             HHcC---C-CHHHHHHHHH
Confidence            8543   4 4454444443

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.61  E-value=4.2e-14  Score=145.86  Aligned_cols=184  Identities=17%  Similarity=0.299  Sum_probs=132.2

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI  286 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~  286 (550)
                      .++||++++..+..++...           .+.+++|+||||||||++|+.+++.+++.+ ...+++.++++........
T Consensus        18 ~~~g~~~~~~~l~~~i~~~-----------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~~   85 (319)
T PRK00440         18 EIVGQEEIVERLKSYVKEK-----------NMPHLLFAGPPGTGKTTAALALARELYGED-WRENFLELNASDERGIDVI   85 (319)
T ss_pred             HhcCcHHHHHHHHHHHhCC-----------CCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cccceEEeccccccchHHH
Confidence            4789999999988888654           234689999999999999999999987621 1234566665543322111


Q ss_pred             hhHHhHHHHHHHhC-----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633          287 KHFFDSLAALVKKR-----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV  361 (550)
Q Consensus       287 s~liG~lt~al~~~-----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~  361 (550)
                      ..   .+.+..+..     ++.||+|||++.++++.++.|+++++..  .           .++.+|+++|..       
T Consensus        86 ~~---~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~--~-----------~~~~lIl~~~~~-------  142 (319)
T PRK00440         86 RN---KIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMY--S-----------QNTRFILSCNYS-------  142 (319)
T ss_pred             HH---HHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcC--C-----------CCCeEEEEeCCc-------
Confidence            11   222233333     3459999999999999999999999876  4           446688888753       


Q ss_pred             hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc
Q 036633          362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA  441 (550)
Q Consensus       362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~  441 (550)
                                    ..+.+.+.+|+ .++.|.   |++.+++..++...+.+       .|+   .++++++++|+..+.
T Consensus       143 --------------~~l~~~l~sr~-~~~~~~---~l~~~ei~~~l~~~~~~-------~~~---~i~~~al~~l~~~~~  194 (319)
T PRK00440        143 --------------SKIIDPIQSRC-AVFRFS---PLKKEAVAERLRYIAEN-------EGI---EITDDALEAIYYVSE  194 (319)
T ss_pred             --------------cccchhHHHHh-heeeeC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHcC
Confidence                          24456688999 689999   99999999888877753       455   789999999998543


Q ss_pred             ccCCCcccHHHHHHcc
Q 036633          442 RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       442 ~~~GaN~R~L~~~i~~  457 (550)
                         | |.|.+-+.++.
T Consensus       195 ---g-d~r~~~~~l~~  206 (319)
T PRK00440        195 ---G-DMRKAINALQA  206 (319)
T ss_pred             ---C-CHHHHHHHHHH
Confidence               5 66766666653

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.61  E-value=1.3e-14  Score=142.30  Aligned_cols=180  Identities=13%  Similarity=0.168  Sum_probs=127.4

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF  289 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l  289 (550)
                      +++.++..+...+...           .+.+++|+||+|||||++|+++++.+..   ...+++.++|+.+....  ..+
T Consensus        21 ~~~~~~~~l~~~~~~~-----------~~~~lll~G~~G~GKT~la~~~~~~~~~---~~~~~~~i~~~~~~~~~--~~~   84 (226)
T TIGR03420        21 GNAELLAALRQLAAGK-----------GDRFLYLWGESGSGKSHLLQAACAAAEE---RGKSAIYLPLAELAQAD--PEV   84 (226)
T ss_pred             CcHHHHHHHHHHHhcC-----------CCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEeHHHHHHhH--HHH
Confidence            4566666665554322           3479999999999999999999999876   45588999998875322  111


Q ss_pred             HhHHHHHHHhCCCCeEEeccccccCHH--HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhH
Q 036633          290 FDSLAALVKKRPYSVVLFDKIEKANSS--ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATY  367 (550)
Q Consensus       290 iG~lt~al~~~p~~VlllDEIeka~~~--v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~  367 (550)
                          .+.+.  ..++|+|||++.++..  .+..|..+++..  .   +       .+..+|+|||......         
T Consensus        85 ----~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~--~---~-------~~~~iIits~~~~~~~---------  137 (226)
T TIGR03420        85 ----LEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRV--R---E-------AGGRLLIAGRAAPAQL---------  137 (226)
T ss_pred             ----Hhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHH--H---H-------cCCeEEEECCCChHHC---------
Confidence                12222  2369999999999874  488888888754  2   0       1124778887643211         


Q ss_pred             hhHHHHhccCCChhhhhhcc--ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCC
Q 036633          368 GRVNEVTGSLFKPSLLKLLD--KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYG  445 (550)
Q Consensus       368 ~~~~~~l~~~f~p~ll~Rid--~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~G  445 (550)
                              ..+.+.+.+|+.  ..|.+.   |++.+++..++...+..       .++   .++++++++|+.. |+  |
T Consensus       138 --------~~~~~~L~~r~~~~~~i~l~---~l~~~e~~~~l~~~~~~-------~~~---~~~~~~l~~L~~~-~~--g  193 (226)
T TIGR03420       138 --------PLRLPDLRTRLAWGLVFQLP---PLSDEEKIAALQSRAAR-------RGL---QLPDEVADYLLRH-GS--R  193 (226)
T ss_pred             --------CcccHHHHHHHhcCeeEecC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHh-cc--C
Confidence                    223378888984  467788   99999998888765432       344   7899999999984 54  6


Q ss_pred             CcccHHHHHHcc
Q 036633          446 QNGEGLKRWMDQ  457 (550)
Q Consensus       446 aN~R~L~~~i~~  457 (550)
                       |.|.|+++++.
T Consensus       194 -n~r~L~~~l~~  204 (226)
T TIGR03420       194 -DMGSLMALLDA  204 (226)
T ss_pred             -CHHHHHHHHHH
Confidence             99999999997

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.60  E-value=2.4e-14  Score=151.30  Aligned_cols=159  Identities=14%  Similarity=0.218  Sum_probs=109.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcC--CCeeEEEeccCCCcHHHHHHHHHHHhccCCC----------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRR--QLGLFLFAGPNCSGKAELAKAIANELYDNND----------------  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~--~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~----------------  267 (550)
                      +.|+||+++++.+.+++...   +.+.....  .|..+||+||+|+|||++|+.+|+.+.....                
T Consensus         5 ~~IiGq~~~~~~L~~~i~~~---~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~   81 (394)
T PRK07940          5 DDLVGQEAVVAELRAAARAA---RADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA   81 (394)
T ss_pred             hhccChHHHHHHHHHHHHhc---cccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence            46899999999999999876   43322222  2378999999999999999999999876210                


Q ss_pred             -CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          268 -NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       268 -~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                       .+..+..+......  ..+..+ -.+.+.+...    ++.|++|||+|++++..+|.||+.||+.  .           
T Consensus        82 ~~hpD~~~i~~~~~~--i~i~~i-R~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep--~-----------  145 (394)
T PRK07940         82 GTHPDVRVVAPEGLS--IGVDEV-RELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP--P-----------  145 (394)
T ss_pred             CCCCCEEEecccccc--CCHHHH-HHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC--C-----------
Confidence             00011112111000  001110 0333444333    3569999999999999999999999987  5           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE  408 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~  408 (550)
                      .+++||++|+..                     ..+.|.+++|| ..+.|.   |++.+++..++.
T Consensus       146 ~~~~fIL~a~~~---------------------~~llpTIrSRc-~~i~f~---~~~~~~i~~~L~  186 (394)
T PRK07940        146 PRTVWLLCAPSP---------------------EDVLPTIRSRC-RHVALR---TPSVEAVAEVLV  186 (394)
T ss_pred             CCCeEEEEECCh---------------------HHChHHHHhhC-eEEECC---CCCHHHHHHHHH
Confidence            456666666542                     35568899999 899999   999998776665

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.60  E-value=3e-14  Score=158.59  Aligned_cols=186  Identities=19%  Similarity=0.254  Sum_probs=130.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------  267 (550)
                      ..++||++++..+..++...   +       -+..+||+||+|+|||++|+++|+.++....                  
T Consensus        16 ~~liGq~~i~~~L~~~l~~~---r-------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~   85 (620)
T PRK14948         16 DELVGQEAIATTLKNALISN---R-------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIA   85 (620)
T ss_pred             hhccChHHHHHHHHHHHHcC---C-------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHh
Confidence            57899999999998888865   2       2268999999999999999999999976210                  


Q ss_pred             --CCCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee
Q 036633          268 --NDNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD  341 (550)
Q Consensus       268 --~~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd  341 (550)
                        ..-.++.++.+.-.....+.    .+.+.+..    .++.||+|||+|+++.+.++.||+.||+.  .          
T Consensus        86 ~g~h~D~~ei~~~~~~~vd~IR----eii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP--p----------  149 (620)
T PRK14948         86 AGNALDVIEIDAASNTGVDNIR----ELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP--P----------  149 (620)
T ss_pred             cCCCccEEEEeccccCCHHHHH----HHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC--C----------
Confidence              00123333322100001111    23333333    34679999999999999999999999987  4          


Q ss_pred             cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                       .+++||++|+..                     ..+.|.+.+|| ..+.|.   +++.+++...+...+.+       .
T Consensus       150 -~~tvfIL~t~~~---------------------~~llpTIrSRc-~~~~f~---~l~~~ei~~~L~~ia~k-------e  196 (620)
T PRK14948        150 -PRVVFVLATTDP---------------------QRVLPTIISRC-QRFDFR---RIPLEAMVQHLSEIAEK-------E  196 (620)
T ss_pred             -cCeEEEEEeCCh---------------------hhhhHHHHhhe-eEEEec---CCCHHHHHHHHHHHHHH-------h
Confidence             557788877632                     23456799999 799999   99998888776665532       3


Q ss_pred             CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      |+   .++++++..|+..+.   | +.|.+.+.+++
T Consensus       197 gi---~is~~al~~La~~s~---G-~lr~A~~lLek  225 (620)
T PRK14948        197 SI---EIEPEALTLVAQRSQ---G-GLRDAESLLDQ  225 (620)
T ss_pred             CC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            44   689999999988643   4 45766666653

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.59  E-value=1.7e-14  Score=153.16  Aligned_cols=198  Identities=20%  Similarity=0.256  Sum_probs=133.0

Q ss_pred             cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      ...|.|.+..++.+...+...+.     ...|+.   .|..+||+||||||||++|+++|..+..      +|+.+++++
T Consensus       130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~---~p~gvLL~GppGtGKT~lAkaia~~~~~------~~i~v~~~~  200 (389)
T PRK03992        130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIE---PPKGVLLYGPPGTGKTLLAKAVAHETNA------TFIRVVGSE  200 (389)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC---CCCceEEECCCCCChHHHHHHHHHHhCC------CEEEeehHH
Confidence            35688999999999988754311     012322   3378999999999999999999999876      899999987


Q ss_pred             CCchhh--hhhHHhHHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          280 YTELES--IKHFFDSLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       280 ~~~~~~--~s~liG~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                      +.....  ....+..+.+..+.+..+||||||||.+           ++.++..|++++..-  ..+.      +..+++
T Consensus       201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~l--d~~~------~~~~v~  272 (389)
T PRK03992        201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEM--DGFD------PRGNVK  272 (389)
T ss_pred             HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhc--cccC------CCCCEE
Confidence            642210  1112222233333444489999999986           467788888877532  1011      124677


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV  424 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~  424 (550)
                      ||+|||..                     ..++|+++  +|+|..|.|.   +++.++...|+..++..       ..+ 
T Consensus       273 VI~aTn~~---------------------~~ld~allRpgRfd~~I~v~---~P~~~~R~~Il~~~~~~-------~~~-  320 (389)
T PRK03992        273 IIAATNRI---------------------DILDPAILRPGRFDRIIEVP---LPDEEGRLEILKIHTRK-------MNL-  320 (389)
T ss_pred             EEEecCCh---------------------hhCCHHHcCCccCceEEEEC---CCCHHHHHHHHHHHhcc-------CCC-
Confidence            99999964                     35677777  4999999999   89999999999876632       222 


Q ss_pred             cccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .-.++   ...|+...-   |.++++|+.++..
T Consensus       321 ~~~~~---~~~la~~t~---g~sgadl~~l~~e  347 (389)
T PRK03992        321 ADDVD---LEELAELTE---GASGADLKAICTE  347 (389)
T ss_pred             CCcCC---HHHHHHHcC---CCCHHHHHHHHHH
Confidence            11122   445555332   4466899988886

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.59  E-value=4e-14  Score=146.53  Aligned_cols=225  Identities=13%  Similarity=0.150  Sum_probs=145.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCCCcee-----------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DNDNHLI-----------  273 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~~li-----------  273 (550)
                      ..|+||++++..+..++...           +.+.++|.||+|||||++|+++++.+...+ ....||.           
T Consensus        17 ~~ivGq~~~k~al~~~~~~p-----------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~   85 (350)
T CHL00081         17 TAIVGQEEMKLALILNVIDP-----------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSD   85 (350)
T ss_pred             HHHhChHHHHHHHHHhccCC-----------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhch
Confidence            45899999998887777654           447788999999999999999999986521 1111222           


Q ss_pred             -----------------EEecCCCCchhhhhhHHh--HHHHHHH------------hCCCCeEEeccccccCHHHHHHHH
Q 036633          274 -----------------HFDMGNYTELESIKHFFD--SLAALVK------------KRPYSVVLFDKIEKANSSILNLLL  322 (550)
Q Consensus       274 -----------------~id~s~~~~~~~~s~liG--~lt~al~------------~~p~~VlllDEIeka~~~v~~~Ll  322 (550)
                                       .+.|..+....+.++++|  .+..++.            +...++||+|||+.+++.+|+.|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL  165 (350)
T CHL00081         86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL  165 (350)
T ss_pred             hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence                             122222233335667788  3333332            223589999999999999999999


Q ss_pred             HhhhhccccccccCCeEeec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC-H
Q 036633          323 KILKTDFNRKATRGIAAFDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL-D  400 (550)
Q Consensus       323 ~~ld~g~~~~l~d~g~~vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~-~  400 (550)
                      +++++|++. +...|..... .+.++|+|.|..                    ...|++++++||.-.|.+.   ..+ .
T Consensus       166 eam~e~~~~-ier~G~s~~~p~rfiviaT~np~--------------------eg~l~~~LldRf~l~i~l~---~~~~~  221 (350)
T CHL00081        166 DSAASGWNT-VEREGISIRHPARFVLVGSGNPE--------------------EGELRPQLLDRFGMHAEIR---TVKDP  221 (350)
T ss_pred             HHHHhCCeE-EeeCCeeeecCCCEEEEeccCcc--------------------cCCCCHHHHHHhCceeecC---CCCCh
Confidence            999998444 4322332222 356677777753                    2579999999998888888   665 4


Q ss_pred             HHHHHHHHHHHHHH-----------------HHHhc--cCCCccccCCHHHHHHHHhcCc-cc-CCCcccHHHHHHcchh
Q 036633          401 TTRLLLREWACEET-----------------KRRNN--DSKAVIVCPSTSALVHIASNAA-RK-YGQNGEGLKRWMDQRP  459 (550)
Q Consensus       401 e~i~~I~~~~l~~~-----------------~~~l~--~~~~~~l~~~~~a~~~L~~~~~-~~-~GaN~R~L~~~i~~~~  459 (550)
                      +.-.+|+.+....-                 .+++.  +.-+-.+.+++++++|+++.+. .+ .|-  |.---+++- .
T Consensus       222 ~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~--Ra~i~l~ra-A  298 (350)
T CHL00081        222 ELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGL--RGDIVTNRA-A  298 (350)
T ss_pred             HHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCC--hHHHHHHHH-H
Confidence            66667766543210                 11111  0111146899999999998665 22 244  766666663 4


Q ss_pred             hHHHHHhhh
Q 036633          460 SADHVIDKF  468 (550)
Q Consensus       460 la~~~l~~~  468 (550)
                      -|.+.+.|.
T Consensus       299 rA~Aal~GR  307 (350)
T CHL00081        299 KALAAFEGR  307 (350)
T ss_pred             HHHHHHcCC
Confidence            455556553

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.58  E-value=4.6e-14  Score=142.08  Aligned_cols=158  Identities=16%  Similarity=0.116  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh
Q 036633          212 NDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD  291 (550)
Q Consensus       212 ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG  291 (550)
                      ..+++.+.+.+....  .       ...+++|.||||||||++|+++|+.+..      ++++++|+.-...   +.++|
T Consensus         4 t~~~~~l~~~~l~~l--~-------~g~~vLL~G~~GtGKT~lA~~la~~lg~------~~~~i~~~~~~~~---~dllg   65 (262)
T TIGR02640         4 TDAVKRVTSRALRYL--K-------SGYPVHLRGPAGTGKTTLAMHVARKRDR------PVMLINGDAELTT---SDLVG   65 (262)
T ss_pred             CHHHHHHHHHHHHHH--h-------cCCeEEEEcCCCCCHHHHHHHHHHHhCC------CEEEEeCCccCCH---HHHhh
Confidence            345555555555441  1       1147899999999999999999998766      9999999864322   22333


Q ss_pred             --------------------------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCC--
Q 036633          292 --------------------------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGI--  337 (550)
Q Consensus       292 --------------------------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g--  337 (550)
                                                      .+..+.+  .+++|+||||+++++++++.|++++++|++. +.+.+  
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~-i~~~~~~  142 (262)
T TIGR02640        66 SYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLE-LPGKRGT  142 (262)
T ss_pred             hhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEE-ccCCCCC
Confidence                                            2233332  2469999999999999999999999999433 33321  


Q ss_pred             -eEee-cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633          338 -AAFD-LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA  410 (550)
Q Consensus       338 -~~vd-~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~  410 (550)
                       ..+. -.+..||+|+|......                ...++++|++|| ..+.+.   .++.++..+|+...
T Consensus       143 ~~~i~~~~~frvIaTsN~~~~~g----------------~~~l~~aL~~R~-~~i~i~---~P~~~~e~~Il~~~  197 (262)
T TIGR02640       143 SRYVDVHPEFRVIFTSNPVEYAG----------------VHETQDALLDRL-ITIFMD---YPDIDTETAILRAK  197 (262)
T ss_pred             CceEecCCCCEEEEeeCCccccc----------------eecccHHHHhhc-EEEECC---CCCHHHHHHHHHHh
Confidence             2221 13455999999742111                123578899999 677777   66888888887754

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.58  E-value=8.8e-14  Score=136.94  Aligned_cols=158  Identities=13%  Similarity=0.120  Sum_probs=116.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL  318 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~  318 (550)
                      .+++|+||+|||||++|+++++.+..   ...+++.+++....+..          .  ......+|+|||++.+++..+
T Consensus        43 ~~~~l~G~~G~GKT~La~ai~~~~~~---~~~~~~~i~~~~~~~~~----------~--~~~~~~~liiDdi~~l~~~~~  107 (227)
T PRK08903         43 RFFYLWGEAGSGRSHLLQALVADASY---GGRNARYLDAASPLLAF----------D--FDPEAELYAVDDVERLDDAQQ  107 (227)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEehHHhHHHH----------h--hcccCCEEEEeChhhcCchHH
Confidence            68999999999999999999999876   56688899987653210          0  112347999999999999999


Q ss_pred             HHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--ceeEecCCC
Q 036633          319 NLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLVVIDLAV  396 (550)
Q Consensus       319 ~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii~f~~~~  396 (550)
                      ..|+.+++..  .   .      -...++|+|++....                  ...|.+++.+|+.  ..|.+.   
T Consensus       108 ~~L~~~~~~~--~---~------~~~~~vl~~~~~~~~------------------~~~l~~~L~sr~~~~~~i~l~---  155 (227)
T PRK08903        108 IALFNLFNRV--R---A------HGQGALLVAGPAAPL------------------ALPLREDLRTRLGWGLVYELK---  155 (227)
T ss_pred             HHHHHHHHHH--H---H------cCCcEEEEeCCCCHH------------------hCCCCHHHHHHHhcCeEEEec---
Confidence            9999999654  2   0      022346677665321                  1246788999984  477788   


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          397 PLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       397 pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ||+.++...++.....       ..++   .++++++++|+. .|+  | |.|.|.++++.
T Consensus       156 pl~~~~~~~~l~~~~~-------~~~v---~l~~~al~~L~~-~~~--g-n~~~l~~~l~~  202 (227)
T PRK08903        156 PLSDADKIAALKAAAA-------ERGL---QLADEVPDYLLT-HFR--R-DMPSLMALLDA  202 (227)
T ss_pred             CCCHHHHHHHHHHHHH-------HcCC---CCCHHHHHHHHH-hcc--C-CHHHHHHHHHH
Confidence            9998877666654332       2444   889999999999 554  6 99999999996

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.58  E-value=2.6e-14  Score=150.66  Aligned_cols=201  Identities=21%  Similarity=0.245  Sum_probs=129.6

Q ss_pred             hhhcCcccCcHHHHHHHHHHHhcchhh-----hcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          202 GRLKKRVFGQNDAIDVIFEALTKPKAA-----KKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       202 ~~L~~~viGQ~~ai~~i~~~l~~~~~~-----~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      ......|.|.+..++.+..++...+..     ..|+   ..|..+||+||||||||++|+++|..+..      +|+++.
T Consensus       118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~---~~p~gvLL~GppGtGKT~lakaia~~l~~------~~~~v~  188 (364)
T TIGR01242       118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGI---EPPKGVLLYGPPGTGKTLLAKAVAHETNA------TFIRVV  188 (364)
T ss_pred             CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHHHHHHHhCCC------CEEecc
Confidence            334467999999999999988643110     1122   12467999999999999999999999877      788887


Q ss_pred             cCCCCchh--hhhhHHhHHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633          277 MGNYTELE--SIKHFFDSLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       277 ~s~~~~~~--~~s~liG~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      ++++....  .....+..+....+....+||||||+|.+           ++.++..|.+++..-  ..+.      ...
T Consensus       189 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~l--d~~~------~~~  260 (364)
T TIGR01242       189 GSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEL--DGFD------PRG  260 (364)
T ss_pred             hHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHh--hCCC------CCC
Confidence            66543211  00111112222333334479999999986           356677777776432  1011      124


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                      ++.||+|||..                     ..++|+++  +|+|.+|.|.   +++.++...|+..++..       .
T Consensus       261 ~v~vI~ttn~~---------------------~~ld~al~r~grfd~~i~v~---~P~~~~r~~Il~~~~~~-------~  309 (364)
T TIGR01242       261 NVKVIAATNRP---------------------DILDPALLRPGRFDRIIEVP---LPDFEGRLEILKIHTRK-------M  309 (364)
T ss_pred             CEEEEEecCCh---------------------hhCChhhcCcccCceEEEeC---CcCHHHHHHHHHHHHhc-------C
Confidence            67799999964                     24566776  5999999999   89999999998766532       2


Q ss_pred             CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .. .-.++   .+.|+..+.   |.+|++|+.++..
T Consensus       310 ~l-~~~~~---~~~la~~t~---g~sg~dl~~l~~~  338 (364)
T TIGR01242       310 KL-AEDVD---LEAIAKMTE---GASGADLKAICTE  338 (364)
T ss_pred             CC-CccCC---HHHHHHHcC---CCCHHHHHHHHHH
Confidence            11 11122   345555332   4466899888875

Many proteins may score above the trusted cutoff because an internal

>CHL00176 ftsH cell division protein; Validated

Probab=99.57  E-value=3e-14  Score=158.74  Aligned_cols=196  Identities=19%  Similarity=0.261  Sum_probs=126.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhc--CCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKK--GLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~--gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~  283 (550)
                      +.|+|.+++++.+...+........  .+ ....|..+||+||||||||++|+++|..+..      ||+.++++++.+.
T Consensus       183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~-g~~~p~gVLL~GPpGTGKT~LAralA~e~~~------p~i~is~s~f~~~  255 (638)
T CHL00176        183 RDIAGIEEAKEEFEEVVSFLKKPERFTAV-GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV------PFFSISGSEFVEM  255 (638)
T ss_pred             HhccChHHHHHHHHHHHHHHhCHHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHhCC------CeeeccHHHHHHH
Confidence            4588999999877666533200011  00 1123467999999999999999999998866      9999999887532


Q ss_pred             hh---hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhh--hccccccccCCeEeecCCeEE
Q 036633          284 ES---IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILK--TDFNRKATRGIAAFDLTNTLI  347 (550)
Q Consensus       284 ~~---~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld--~g~~~~l~d~g~~vd~~~~ii  347 (550)
                      ..   .+.+...|..+....| +||||||||.+.           +.....|.+++.  +|    +..      -.++++
T Consensus       256 ~~g~~~~~vr~lF~~A~~~~P-~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg----~~~------~~~ViV  324 (638)
T CHL00176        256 FVGVGAARVRDLFKKAKENSP-CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG----FKG------NKGVIV  324 (638)
T ss_pred             hhhhhHHHHHHHHHHHhcCCC-cEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcc----ccC------CCCeeE
Confidence            21   1111113333333344 899999998763           333344444442  12    111      145778


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                      |+|||..                     ..++|+++  +|+|..|.|.   +++.++...|++.++..       ...  
T Consensus       325 IaaTN~~---------------------~~LD~ALlRpGRFd~~I~v~---lPd~~~R~~IL~~~l~~-------~~~--  371 (638)
T CHL00176        325 IAATNRV---------------------DILDAALLRPGRFDRQITVS---LPDREGRLDILKVHARN-------KKL--  371 (638)
T ss_pred             EEecCch---------------------HhhhhhhhccccCceEEEEC---CCCHHHHHHHHHHHHhh-------ccc--
Confidence            9999863                     23456676  5999999999   88999999999988854       111  


Q ss_pred             ccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          426 VCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        .++..+..|+... +  |.|+++|+++++.
T Consensus       372 --~~d~~l~~lA~~t-~--G~sgaDL~~lvne  398 (638)
T CHL00176        372 --SPDVSLELIARRT-P--GFSGADLANLLNE  398 (638)
T ss_pred             --chhHHHHHHHhcC-C--CCCHHHHHHHHHH
Confidence              2334466666643 2  4466888888875

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=99.57  E-value=1.2e-14  Score=156.16  Aligned_cols=189  Identities=20%  Similarity=0.233  Sum_probs=141.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC-CCCCceeE-EecCCCCc
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN-DNDNHLIH-FDMGNYTE  282 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~~li~-id~s~~~~  282 (550)
                      ..|+||++.+..+.+++...           +- ..+||+||-|||||++||.+|+.+...+ ....|+.. ..|-+...
T Consensus        16 ~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~   84 (515)
T COG2812          16 DDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE   84 (515)
T ss_pred             HHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc
Confidence            56799999999999999977           33 7899999999999999999999998732 11222211 11111211


Q ss_pred             hh--------hhh-hHHh---HHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          283 LE--------SIK-HFFD---SLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       283 ~~--------~~s-~liG---~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                      ..        ..| ..+.   .+.+.+...|    |.|.+|||+|.++...+|.||+.+|+.  -           .+++
T Consensus        85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP--P-----------~hV~  151 (515)
T COG2812          85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP--P-----------SHVK  151 (515)
T ss_pred             CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC--c-----------cCeE
Confidence            10        001 0111   5566665555    579999999999999999999999988  5           7788


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV  426 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l  426 (550)
                      ||++|.-.                     ...++.+++|| +.+.|.   .++.++|..-+...+.+       .++   
T Consensus       152 FIlATTe~---------------------~Kip~TIlSRc-q~f~fk---ri~~~~I~~~L~~i~~~-------E~I---  196 (515)
T COG2812         152 FILATTEP---------------------QKIPNTILSRC-QRFDFK---RLDLEEIAKHLAAILDK-------EGI---  196 (515)
T ss_pred             EEEecCCc---------------------CcCchhhhhcc-cccccc---CCCHHHHHHHHHHHHHh-------cCC---
Confidence            88776642                     57788999999 899999   99999999888887754       555   


Q ss_pred             cCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          427 CPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       427 ~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .++++++.+|+..+-   | +.|+.-..+++
T Consensus       197 ~~e~~aL~~ia~~a~---G-s~RDalslLDq  223 (515)
T COG2812         197 NIEEDALSLIARAAE---G-SLRDALSLLDQ  223 (515)
T ss_pred             ccCHHHHHHHHHHcC---C-ChhhHHHHHHH
Confidence            899999999998643   4 44877777776

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=9.9e-14  Score=147.37  Aligned_cols=190  Identities=21%  Similarity=0.283  Sum_probs=133.0

Q ss_pred             cccCcHHHHHHHHHHHhcch-----hhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          207 RVFGQNDAIDVIFEALTKPK-----AAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~-----~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      .|=|+++.-.++..++.+..     ..+.|+.   .|.-+||+||||||||.||+++|+....      +|+.+-..++ 
T Consensus       512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlAKAVANEag~------NFisVKGPEL-  581 (802)
T KOG0733|consen  512 DIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLAKAVANEAGA------NFISVKGPEL-  581 (802)
T ss_pred             hcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHHHHHhhhccC------ceEeecCHHH-
Confidence            35567777777766665430     0244553   3578999999999999999999999877      8999887665 


Q ss_pred             chhhhhhHHh-------HHHHHHHhCCCCeEEeccccccCH-----------HHHHHHHHhhhhccccccccCCeEeecC
Q 036633          282 ELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKANS-----------SILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       282 ~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~~-----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                          .++.+|       ++-...|.+.-|||||||||.+-|           .+.|.||.-||..  .         +-+
T Consensus       582 ----lNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl--~---------~R~  646 (802)
T KOG0733|consen  582 ----LNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL--E---------ERR  646 (802)
T ss_pred             ----HHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc--c---------ccc
Confidence                566677       222222334449999999997654           5899999888766  3         226


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                      ++.||.+||.+                     ...+|+++  +|+|.+....   +.+.++...|++.....       .
T Consensus       647 gV~viaATNRP---------------------DiIDpAiLRPGRlDk~LyV~---lPn~~eR~~ILK~~tkn-------~  695 (802)
T KOG0733|consen  647 GVYVIAATNRP---------------------DIIDPAILRPGRLDKLLYVG---LPNAEERVAILKTITKN-------T  695 (802)
T ss_pred             ceEEEeecCCC---------------------cccchhhcCCCccCceeeec---CCCHHHHHHHHHHHhcc-------C
Confidence            77889999986                     46788888  8999888888   77888888888876632       2


Q ss_pred             CCccccCCHHH-HHHHHhcCc-ccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSA-LVHIASNAA-RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a-~~~L~~~~~-~~~GaN~R~L~~~i~~  457 (550)
                      +   .-+++++ ++.|+...- ..|  .|-+|..+++.
T Consensus       696 k---~pl~~dVdl~eia~~~~c~gf--tGADLaaLvre  728 (802)
T KOG0733|consen  696 K---PPLSSDVDLDEIARNTKCEGF--TGADLAALVRE  728 (802)
T ss_pred             C---CCCCcccCHHHHhhcccccCC--chhhHHHHHHH
Confidence            2   2344444 566665322 222  23678888887

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.55  E-value=4.2e-14  Score=161.81  Aligned_cols=194  Identities=20%  Similarity=0.280  Sum_probs=132.8

Q ss_pred             cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      -..|.|++.+++.+.+.+...+.     .+.|+.   .|..+||+||||||||++|+++|..+..      +|+.+++++
T Consensus       452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~---~~~giLL~GppGtGKT~lakalA~e~~~------~fi~v~~~~  522 (733)
T TIGR01243       452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIR---PPKGVLLFGPPGTGKTLLAKAVATESGA------NFIAVRGPE  522 (733)
T ss_pred             hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCC---CCceEEEECCCCCCHHHHHHHHHHhcCC------CEEEEehHH
Confidence            35689999999999888865311     012322   2367999999999999999999999876      999999887


Q ss_pred             CCchh--hhhhHHhHHHHHHHhCCCCeEEeccccccCH------------HHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633          280 YTELE--SIKHFFDSLAALVKKRPYSVVLFDKIEKANS------------SILNLLLKILKTDFNRKATRGIAAFDLTNT  345 (550)
Q Consensus       280 ~~~~~--~~s~liG~lt~al~~~p~~VlllDEIeka~~------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~  345 (550)
                      +....  .....+..+....+....+||||||||.+.+            .+.+.||..++.-  .         ..+++
T Consensus       523 l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~--~---------~~~~v  591 (733)
T TIGR01243       523 ILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGI--Q---------ELSNV  591 (733)
T ss_pred             HhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcc--c---------CCCCE
Confidence            63221  0111222333444555559999999987632            3566677777532  1         12578


Q ss_pred             EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      +||+|||..                     ..++|+++  +|||.+|.|.   +++.++...|+...+.         +.
T Consensus       592 ~vI~aTn~~---------------------~~ld~allRpgRfd~~i~v~---~Pd~~~R~~i~~~~~~---------~~  638 (733)
T TIGR01243       592 VVIAATNRP---------------------DILDPALLRPGRFDRLILVP---PPDEEARKEIFKIHTR---------SM  638 (733)
T ss_pred             EEEEeCCCh---------------------hhCCHhhcCCCccceEEEeC---CcCHHHHHHHHHHHhc---------CC
Confidence            899999974                     35678888  5999999999   8899999999876552         22


Q ss_pred             ccccCCHH-HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          424 VIVCPSTS-ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       424 ~~l~~~~~-a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                         .++++ -++.|+..+-   |.+|.+|..+++.
T Consensus       639 ---~~~~~~~l~~la~~t~---g~sgadi~~~~~~  667 (733)
T TIGR01243       639 ---PLAEDVDLEELAEMTE---GYTGADIEAVCRE  667 (733)
T ss_pred             ---CCCccCCHHHHHHHcC---CCCHHHHHHHHHH
Confidence               22222 2566666432   3355889988876

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.55  E-value=9.4e-14  Score=147.13  Aligned_cols=192  Identities=18%  Similarity=0.261  Sum_probs=128.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..|.|.+..++.+.+++...+.     ...|+.   .|..+||+||||||||++|+++|..+..      +|+++.++++
T Consensus       145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~---~pkgvLL~GppGTGKT~LAkalA~~l~~------~fi~i~~s~l  215 (398)
T PTZ00454        145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGID---PPRGVLLYGPPGTGKTMLAKAVAHHTTA------TFIRVVGSEF  215 (398)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC---CCceEEEECCCCCCHHHHHHHHHHhcCC------CEEEEehHHH
Confidence            4689999999999888864311     122332   3478999999999999999999999876      8999987665


Q ss_pred             CchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          281 TELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       281 ~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      .     +..+|       .+....+.+..+||||||||.+           +..++..+.+++..-  ..+..      .
T Consensus       216 ~-----~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~l--d~~~~------~  282 (398)
T PTZ00454        216 V-----QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQM--DGFDQ------T  282 (398)
T ss_pred             H-----HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHh--hccCC------C
Confidence            3     22333       2222233333489999999865           245666666666421  10110      1


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                      .+++||+|||..                     ..++|+++.  |+|..|.|.   +++.++...|+...+.+       
T Consensus       283 ~~v~VI~aTN~~---------------------d~LDpAllR~GRfd~~I~~~---~P~~~~R~~Il~~~~~~-------  331 (398)
T PTZ00454        283 TNVKVIMATNRA---------------------DTLDPALLRPGRLDRKIEFP---LPDRRQKRLIFQTITSK-------  331 (398)
T ss_pred             CCEEEEEecCCc---------------------hhCCHHHcCCCcccEEEEeC---CcCHHHHHHHHHHHHhc-------
Confidence            357789999963                     467788874  999999999   88999998888876642       


Q ss_pred             CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .++ .-.++   ...++....   |.++.+|+.+++.
T Consensus       332 ~~l-~~dvd---~~~la~~t~---g~sgaDI~~l~~e  361 (398)
T PTZ00454        332 MNL-SEEVD---LEDFVSRPE---KISAADIAAICQE  361 (398)
T ss_pred             CCC-CcccC---HHHHHHHcC---CCCHHHHHHHHHH
Confidence            222 11222   344454322   4466899998886

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.55  E-value=5e-14  Score=154.34  Aligned_cols=162  Identities=24%  Similarity=0.308  Sum_probs=109.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +.|+|+++++..+...+.....    ...|.   ..|..+||+||||||||++|+++|..+..      +|+.++++++.
T Consensus        55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~---~~~~giLL~GppGtGKT~la~alA~~~~~------~~~~i~~~~~~  125 (495)
T TIGR01241        55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGA---KIPKGVLLVGPPGTGKTLLAKAVAGEAGV------PFFSISGSDFV  125 (495)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCC---CCCCcEEEECCCCCCHHHHHHHHHHHcCC------CeeeccHHHHH
Confidence            4588999998877765542200    01122   23367999999999999999999998876      89999988764


Q ss_pred             chh---hhhhHHhHHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeecCC
Q 036633          282 ELE---SIKHFFDSLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDLTN  344 (550)
Q Consensus       282 ~~~---~~s~liG~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~  344 (550)
                      +..   ....+...|..+....| +||||||||.+.+              .+++.||..++.-     ..      -.+
T Consensus       126 ~~~~g~~~~~l~~~f~~a~~~~p-~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~-----~~------~~~  193 (495)
T TIGR01241       126 EMFVGVGASRVRDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF-----GT------NTG  193 (495)
T ss_pred             HHHhcccHHHHHHHHHHHHhcCC-CEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc-----cC------CCC
Confidence            321   11111113333333444 8999999987643              3445555555422     11      135


Q ss_pred             eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633          345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACE  412 (550)
Q Consensus       345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~  412 (550)
                      ++||+|||..                     ..++|+++.  |+|..|.|.   +++.++..+|+..++.
T Consensus       194 v~vI~aTn~~---------------------~~ld~al~r~gRfd~~i~i~---~Pd~~~R~~il~~~l~  239 (495)
T TIGR01241       194 VIVIAATNRP---------------------DVLDPALLRPGRFDRQVVVD---LPDIKGREEILKVHAK  239 (495)
T ss_pred             eEEEEecCCh---------------------hhcCHHHhcCCcceEEEEcC---CCCHHHHHHHHHHHHh
Confidence            7789999974                     356777874  999999999   8899999999988774

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.54  E-value=1.9e-13  Score=141.51  Aligned_cols=224  Identities=14%  Similarity=0.205  Sum_probs=140.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc----------CCCCCCceeEE
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYD----------NNDNDNHLIHF  275 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~----------~~~~~~~li~i  275 (550)
                      ..|+||++++..+.-++...           +.+.+++.||||+|||+++++++..+..          +...+..++..
T Consensus         4 ~~ivgq~~~~~al~~~~~~~-----------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (337)
T TIGR02030         4 TAIVGQDEMKLALLLNVIDP-----------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCE   72 (337)
T ss_pred             cccccHHHHHHHHHHHhcCC-----------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccCh
Confidence            46899999998876666543           3478999999999999999999998832          00111111211


Q ss_pred             ecC-------------------CCCchhhhhhHHh--HHHHHHH------------hCCCCeEEeccccccCHHHHHHHH
Q 036633          276 DMG-------------------NYTELESIKHFFD--SLAALVK------------KRPYSVVLFDKIEKANSSILNLLL  322 (550)
Q Consensus       276 d~s-------------------~~~~~~~~s~liG--~lt~al~------------~~p~~VlllDEIeka~~~v~~~Ll  322 (550)
                      +|.                   ++.-..+...++|  .+...++            +...+++|+|||+.+++.+|+.|+
T Consensus        73 ~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll  152 (337)
T TIGR02030        73 EVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLL  152 (337)
T ss_pred             HHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHH
Confidence            111                   1111223346677  3333332            233489999999999999999999


Q ss_pred             HhhhhccccccccCCeEeec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH-
Q 036633          323 KILKTDFNRKATRGIAAFDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD-  400 (550)
Q Consensus       323 ~~ld~g~~~~l~d~g~~vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~-  400 (550)
                      +++++|++. ++..|....+ .+.++|+|.|..                    ...|++++++||...+.+.   +++. 
T Consensus       153 ~~l~~g~~~-v~r~G~~~~~~~r~iviat~np~--------------------eg~l~~~LldRf~l~i~l~---~p~~~  208 (337)
T TIGR02030       153 DVAASGWNV-VEREGISIRHPARFVLVGSGNPE--------------------EGELRPQLLDRFGLHAEIR---TVRDV  208 (337)
T ss_pred             HHHHhCCeE-EEECCEEEEcCCCEEEEeccccc--------------------cCCCCHHHHhhcceEEECC---CCCCH
Confidence            999999444 3333433332 346677777753                    2579999999998777777   5554 


Q ss_pred             HHHHHHHHHHHHH----------H-------HHHhc--cCCCccccCCHHHHHHHHhcCc-ccC-CCcccHHHHHHcchh
Q 036633          401 TTRLLLREWACEE----------T-------KRRNN--DSKAVIVCPSTSALVHIASNAA-RKY-GQNGEGLKRWMDQRP  459 (550)
Q Consensus       401 e~i~~I~~~~l~~----------~-------~~~l~--~~~~~~l~~~~~a~~~L~~~~~-~~~-GaN~R~L~~~i~~~~  459 (550)
                      ++...|+.+....          +       .+.+.  ..-+-.+.+++++++++++.+. ... |-  |.--.++.- .
T Consensus       209 eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~--Ra~i~l~ra-A  285 (337)
T TIGR02030       209 ELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGL--RGELTLNRA-A  285 (337)
T ss_pred             HHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCC--cHHHHHHHH-H
Confidence            6666776663211          1       11110  0011146899999999998654 222 33  766666663 4


Q ss_pred             hHHHHHhh
Q 036633          460 SADHVIDK  467 (550)
Q Consensus       460 la~~~l~~  467 (550)
                      -|.+.+.|
T Consensus       286 rA~Aal~G  293 (337)
T TIGR02030       286 KALAAFEG  293 (337)
T ss_pred             HHHHHHcC
Confidence            45555655

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PHA02244 ATPase-like protein

Probab=99.54  E-value=5.8e-13  Score=137.37  Aligned_cols=195  Identities=11%  Similarity=0.042  Sum_probs=124.2

Q ss_pred             hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633          204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~  283 (550)
                      +....+|+...+......+.+..  .       .+.+++|.||||||||++|+++|..+..      +|++++.  +.+ 
T Consensus        94 ~d~~~ig~sp~~~~~~~ri~r~l--~-------~~~PVLL~GppGtGKTtLA~aLA~~lg~------pfv~In~--l~d-  155 (383)
T PHA02244         94 IDTTKIASNPTFHYETADIAKIV--N-------ANIPVFLKGGAGSGKNHIAEQIAEALDL------DFYFMNA--IMD-  155 (383)
T ss_pred             CCCcccCCCHHHHHHHHHHHHHH--h-------cCCCEEEECCCCCCHHHHHHHHHHHhCC------CEEEEec--ChH-
Confidence            45668888888877666665541  1       2247899999999999999999999877      8998873  211 


Q ss_pred             hhhhhHH-----------hHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeC
Q 036633          284 ESIKHFF-----------DSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTS  351 (550)
Q Consensus       284 ~~~s~li-----------G~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~Ts  351 (550)
                        ...++           |.|+.+++  .+++++||||+.++|+++..|..+++++  . +... ++..--.+..+|+|+
T Consensus       156 --~~~L~G~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p~vq~~L~~lLd~r--~-l~l~g~~i~~h~~FRlIATs  228 (383)
T PHA02244        156 --EFELKGFIDANGKFHETPFYEAFK--KGGLFFIDEIDASIPEALIIINSAIANK--F-FDFADERVTAHEDFRVISAG  228 (383)
T ss_pred             --HHhhcccccccccccchHHHHHhh--cCCEEEEeCcCcCCHHHHHHHHHHhccC--e-EEecCcEEecCCCEEEEEee
Confidence              11122           25566554  4579999999999999999999999988  4 5444 443233566799999


Q ss_pred             CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH-HHHHHHHHHHh----ccCCCccc
Q 036633          352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR-EWACEETKRRN----NDSKAVIV  426 (550)
Q Consensus       352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~-~~~l~~~~~~l----~~~~~~~l  426 (550)
                      |............          .+.+++++++|| .+|.|.   -+++-+..-+. ...|-++...+    ...|+ ..
T Consensus       229 N~~~~G~~~~y~G----------~k~L~~AllDRF-v~I~~d---yp~~~E~~i~~~~~~lv~~a~~lR~~~~~~~l-~~  293 (383)
T PHA02244        229 NTLGKGADHIYVA----------RNKIDGATLDRF-APIEFD---YDEKIEHLISNGDEDLVNFVALLRHEMAEKGL-DH  293 (383)
T ss_pred             CCCccCcccccCC----------CcccCHHHHhhc-EEeeCC---CCcHHHHHHhhhHHHHHHHHHHHHHHHhcCCC-Cc
Confidence            9732111000000          246789999999 789998   55432222211 22333333333    33555 55


Q ss_pred             cCCHHHHHHHHh
Q 036633          427 CPSTSALVHIAS  438 (550)
Q Consensus       427 ~~~~~a~~~L~~  438 (550)
                      .++...+-+-+.
T Consensus       294 ~~StR~li~~a~  305 (383)
T PHA02244        294 VFSMRAIIHGKK  305 (383)
T ss_pred             cccHHHHHHHHH
Confidence            566554433333

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.54  E-value=2.7e-13  Score=152.19  Aligned_cols=210  Identities=16%  Similarity=0.202  Sum_probs=136.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhc----------cCC---------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELY----------DNN---------  266 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~----------~~~---------  266 (550)
                      ..|+||++++..+..++...           +.+.+||.||+|||||++|++|+..+.          .+.         
T Consensus         4 ~~ivGq~~~~~al~~~av~~-----------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~   72 (633)
T TIGR02442         4 TAIVGQEDLKLALLLNAVDP-----------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCE   72 (633)
T ss_pred             chhcChHHHHHHHHHHhhCC-----------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccCh
Confidence            36899999997765554432           336799999999999999999999983          100         


Q ss_pred             ----------CCCCceeEEecCCCCchhhhhhHHh--HHHHHHH------------hCCCCeEEeccccccCHHHHHHHH
Q 036633          267 ----------DNDNHLIHFDMGNYTELESIKHFFD--SLAALVK------------KRPYSVVLFDKIEKANSSILNLLL  322 (550)
Q Consensus       267 ----------~~~~~li~id~s~~~~~~~~s~liG--~lt~al~------------~~p~~VlllDEIeka~~~v~~~Ll  322 (550)
                                ....+|+.+.++.     +...|+|  .+..++.            ....+|||||||+++++.+|+.|+
T Consensus        73 ~~~~~~~~~~~~~~pfv~~p~~~-----t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll  147 (633)
T TIGR02442        73 ECRRKYRPSEQRPVPFVNLPLGA-----TEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLL  147 (633)
T ss_pred             hhhhcccccccCCCCeeeCCCCC-----cHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHH
Confidence                      0134677766543     2456677  3333332            223479999999999999999999


Q ss_pred             HhhhhccccccccCCeEe-ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHH
Q 036633          323 KILKTDFNRKATRGIAAF-DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDT  401 (550)
Q Consensus       323 ~~ld~g~~~~l~d~g~~v-d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e  401 (550)
                      +++++|.+. ++..|... --.+.++|+|+|..                    ...|+++|++||+..|...  ++.+.+
T Consensus       148 ~~le~g~~~-v~r~g~~~~~~~~~~lIat~np~--------------------eg~l~~~L~dR~~l~i~v~--~~~~~~  204 (633)
T TIGR02442       148 DAAAMGVNR-VEREGLSVSHPARFVLIGTMNPE--------------------EGDLRPQLLDRFGLCVDVA--APRDPE  204 (633)
T ss_pred             HHHhcCCEE-EEECCceeeecCCeEEEEecCCC--------------------CCCCCHHHHhhcceEEEcc--CCCchH
Confidence            999999544 33332222 22557789999863                    2468999999998666655  133345


Q ss_pred             HHHHHHHHHHH-----------------HHHHHh---ccCCCccccCCHHHHHHHHhcCc-ccC-CCcccHHHHHHcc
Q 036633          402 TRLLLREWACE-----------------ETKRRN---NDSKAVIVCPSTSALVHIASNAA-RKY-GQNGEGLKRWMDQ  457 (550)
Q Consensus       402 ~i~~I~~~~l~-----------------~~~~~l---~~~~~~~l~~~~~a~~~L~~~~~-~~~-GaN~R~L~~~i~~  457 (550)
                      +...++...+.                 .+.+.+   ...-- .+.++++++++|+..+. ... |.  |....++.-
T Consensus       205 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~-~V~is~~~~~~l~~~~~~~~i~s~--Ra~i~~~r~  279 (633)
T TIGR02442       205 ERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLP-SVRISDSLIRFISELCIEFGVDGH--RADIVMARA  279 (633)
T ss_pred             HHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHHhCCCCc--cHHHHHHHH
Confidence            55566554322                 011111   11111 36889999999998665 333 33  666655543

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.53  E-value=2.8e-13  Score=134.14  Aligned_cols=159  Identities=19%  Similarity=0.197  Sum_probs=109.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccC--HH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKAN--SS  316 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~--~~  316 (550)
                      .+++|+||||||||+++.++++.+..   .......+++.....      ....+.+.+.+  ..+|+||||+...  +.
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~------~~~~~~~~~~~--~dlliiDdi~~~~~~~~  114 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW------FVPEVLEGMEQ--LSLVCIDNIECIAGDEL  114 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh------hhHHHHHHhhh--CCEEEEeChhhhcCCHH
Confidence            58999999999999999999998765   333455555543211      01122223322  3689999999875  44


Q ss_pred             HHHHHHHh----hhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--cee
Q 036633          317 ILNLLLKI----LKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLV  390 (550)
Q Consensus       317 v~~~Ll~~----ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii  390 (550)
                      .+..|+.+    .+.|  .             +.+|+||+.....+                 ..+.|+|.+|+.  .++
T Consensus       115 ~~~~lf~l~n~~~e~g--~-------------~~li~ts~~~p~~l-----------------~~~~~~L~SRl~~g~~~  162 (235)
T PRK08084        115 WEMAIFDLYNRILESG--R-------------TRLLITGDRPPRQL-----------------NLGLPDLASRLDWGQIY  162 (235)
T ss_pred             HHHHHHHHHHHHHHcC--C-------------CeEEEeCCCChHHc-----------------CcccHHHHHHHhCCcee
Confidence            44444444    4444  2             23677887665433                 345799999995  478


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          391 VIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       391 ~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .+.   |++.+++..++.+....       +|+   .+++++++||+.++.   | ++|.+..++++
T Consensus       163 ~l~---~~~~~~~~~~l~~~a~~-------~~~---~l~~~v~~~L~~~~~---~-d~r~l~~~l~~  212 (235)
T PRK08084        163 KLQ---PLSDEEKLQALQLRARL-------RGF---ELPEDVGRFLLKRLD---R-EMRTLFMTLDQ  212 (235)
T ss_pred             eec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHhhc---C-CHHHHHHHHHH
Confidence            888   99999999998764432       455   899999999998653   5 67989888886

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.52  E-value=3.5e-13  Score=139.23  Aligned_cols=224  Identities=14%  Similarity=0.126  Sum_probs=136.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC---CCCCceeEE----ecC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN---DNDNHLIHF----DMG  278 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~---~~~~~li~i----d~s  278 (550)
                      ..|+||++++..+.-++...           ..+++||.||||||||++|++++..+....   ..+-.+.++    |+.
T Consensus         8 ~~i~Gq~~~~~~l~~~~~~~-----------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~   76 (334)
T PRK13407          8 SAIVGQEEMKQAMVLTAIDP-----------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWA   76 (334)
T ss_pred             HHhCCHHHHHHHHHHHHhcc-----------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccc
Confidence            45899999999877655422           125899999999999999999999984210   000011111    110


Q ss_pred             C---------------CCchhhhhhHHh--HHHHHHHh------------CCCCeEEeccccccCHHHHHHHHHhhhhcc
Q 036633          279 N---------------YTELESIKHFFD--SLAALVKK------------RPYSVVLFDKIEKANSSILNLLLKILKTDF  329 (550)
Q Consensus       279 ~---------------~~~~~~~s~liG--~lt~al~~------------~p~~VlllDEIeka~~~v~~~Ll~~ld~g~  329 (550)
                      +               .....+..+++|  .+...+..            ...++||+|||+.+++.+|+.|++.+++|+
T Consensus        77 ~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~  156 (334)
T PRK13407         77 HVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGE  156 (334)
T ss_pred             cccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCC
Confidence            0               111112345777  33333321            224799999999999999999999999994


Q ss_pred             ccccccCCeEeec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH-HHHHHHH
Q 036633          330 NRKATRGIAAFDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD-TTRLLLR  407 (550)
Q Consensus       330 ~~~l~d~g~~vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~-e~i~~I~  407 (550)
                      +. ++..|....+ .+.++|+|+|..                    ...|++++++||.-.|...   +.+. ++..+|+
T Consensus       157 v~-v~r~G~~~~~p~rfiviAt~NP~--------------------e~~l~~aLldRF~~~v~v~---~~~~~~e~~~il  212 (334)
T PRK13407        157 NV-VEREGLSIRHPARFVLVGSGNPE--------------------EGELRPQLLDRFGLSVEVR---SPRDVETRVEVI  212 (334)
T ss_pred             eE-EEECCeEEecCCCEEEEecCCcc--------------------cCCCCHHHHhhcceEEEcC---CCCcHHHHHHHH
Confidence            33 3333444333 346777787853                    2468999999997666666   4433 6666666


Q ss_pred             HHHHHH------HH-----------HHhcc-C-CCccccCCHHHHHHHHhcCc-cc-CCCcccHHHHHHcchhhHHHHHh
Q 036633          408 EWACEE------TK-----------RRNND-S-KAVIVCPSTSALVHIASNAA-RK-YGQNGEGLKRWMDQRPSADHVID  466 (550)
Q Consensus       408 ~~~l~~------~~-----------~~l~~-~-~~~~l~~~~~a~~~L~~~~~-~~-~GaN~R~L~~~i~~~~la~~~l~  466 (550)
                      ......      +.           +++.. + -+-.+.+++++++|+++.+. .. .|-  |.--.++.- .-+.++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~--Ra~i~l~~a-A~a~A~l~  289 (334)
T PRK13407        213 RRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGL--RGELTLLRA-ARALAAFE  289 (334)
T ss_pred             HHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCc--hHHHHHHHH-HHHHHHHc
Confidence            653321      10           11110 1 01146889999999998665 32 244  665555553 44455555


Q ss_pred             h
Q 036633          467 K  467 (550)
Q Consensus       467 ~  467 (550)
                      |
T Consensus       290 G  290 (334)
T PRK13407        290 G  290 (334)
T ss_pred             C
Confidence            4

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.51  E-value=1e-13  Score=123.61  Aligned_cols=116  Identities=26%  Similarity=0.354  Sum_probs=87.7

Q ss_pred             EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch---hhhhhHHhHHHHHHHhCCCCeEEeccccccCHHH
Q 036633          241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL---ESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSI  317 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~---~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v  317 (550)
                      +||+||||||||++|+.+|+.+..      +++.+++++....   .....+.+.+..+-.....+||+|||+|.+.+..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~------~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~   74 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGF------PFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS   74 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTS------EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred             CEEECcCCCCeeHHHHHHHhhccc------ccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence            689999999999999999999876      8999999987622   2223333344444334414999999999988765


Q ss_pred             -----------HHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh-hh
Q 036633          318 -----------LNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL-KL  385 (550)
Q Consensus       318 -----------~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll-~R  385 (550)
                                 ++.|+..+++.  . -.       -+++++|+|||..                     ..++|.++ +|
T Consensus        75 ~~~~~~~~~~~~~~L~~~l~~~--~-~~-------~~~~~vI~ttn~~---------------------~~i~~~l~~~r  123 (132)
T PF00004_consen   75 QPSSSSFEQRLLNQLLSLLDNP--S-SK-------NSRVIVIATTNSP---------------------DKIDPALLRSR  123 (132)
T ss_dssp             STSSSHHHHHHHHHHHHHHHTT--T-TT-------SSSEEEEEEESSG---------------------GGSCHHHHSTT
T ss_pred             ccccccccccccceeeeccccc--c-cc-------cccceeEEeeCCh---------------------hhCCHhHHhCC
Confidence                       88999999877  4 10       1457899999962                     46789999 99


Q ss_pred             ccceeEec
Q 036633          386 LDKLVVID  393 (550)
Q Consensus       386 id~ii~f~  393 (550)
                      |+..|.|+
T Consensus       124 f~~~i~~~  131 (132)
T PF00004_consen  124 FDRRIEFP  131 (132)
T ss_dssp             SEEEEEE-
T ss_pred             CcEEEEcC
Confidence            99888875

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK06893 DNA replication initiation factor; Validated

Probab=99.51  E-value=5e-13  Score=131.86  Aligned_cols=163  Identities=16%  Similarity=0.218  Sum_probs=113.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccC--HH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKAN--SS  316 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~--~~  316 (550)
                      ..++|+||||||||+|+.++++.+..   .......++++....      ....+.+.+  ....+|+||||+...  +.
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~y~~~~~~~~------~~~~~~~~~--~~~dlLilDDi~~~~~~~~  108 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLL---NQRTAIYIPLSKSQY------FSPAVLENL--EQQDLVCLDDLQAVIGNEE  108 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEeeHHHhhh------hhHHHHhhc--ccCCEEEEeChhhhcCChH
Confidence            47899999999999999999998865   333455556542211      001112222  234799999999864  44


Q ss_pred             HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--ceeEecC
Q 036633          317 ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLVVIDL  394 (550)
Q Consensus       317 v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii~f~~  394 (550)
                      .+..|+.+++..  .  ..       ...++|+|+|.....+                 ..+.|++.+|+.  .++.+. 
T Consensus       109 ~~~~l~~l~n~~--~--~~-------~~~illits~~~p~~l-----------------~~~~~~L~sRl~~g~~~~l~-  159 (229)
T PRK06893        109 WELAIFDLFNRI--K--EQ-------GKTLLLISADCSPHAL-----------------SIKLPDLASRLTWGEIYQLN-  159 (229)
T ss_pred             HHHHHHHHHHHH--H--Hc-------CCcEEEEeCCCChHHc-----------------cccchhHHHHHhcCCeeeCC-
Confidence            556777777654  2  00       2345788888765443                 234588999984  377788 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          395 AVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       395 ~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        +++.+++..|+.+.+..       +++   .+++++++||+.+.-   | ++|.+..++++
T Consensus       160 --~pd~e~~~~iL~~~a~~-------~~l---~l~~~v~~~L~~~~~---~-d~r~l~~~l~~  206 (229)
T PRK06893        160 --DLTDEQKIIVLQRNAYQ-------RGI---ELSDEVANFLLKRLD---R-DMHTLFDALDL  206 (229)
T ss_pred             --CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHhcc---C-CHHHHHHHHHH
Confidence              99999999999887743       444   899999999998653   4 66888888885

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.51  E-value=2.6e-14  Score=129.59  Aligned_cols=116  Identities=26%  Similarity=0.390  Sum_probs=84.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--------------HHHHHHHhCCCCeE
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--------------SLAALVKKRPYSVV  305 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--------------~lt~al~~~p~~Vl  305 (550)
                      +++|+||||||||++|+.+|+.+..      +++.+.|+..++..   .++|              .+..+++  ...++
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~------~~~~i~~~~~~~~~---dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il   69 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGR------PVIRINCSSDTTEE---DLIGSYDPSNGQFEFKDGPLVRAMR--KGGIL   69 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTC------EEEEEE-TTTSTHH---HHHCEEET-TTTTCEEE-CCCTTHH--EEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhc------ceEEEEeccccccc---cceeeeeeccccccccccccccccc--ceeEE
Confidence            5899999999999999999999976      99999999876543   4455              2222222  23699


Q ss_pred             EeccccccCHHHHHHHHHhhhhccccccc--cCCeEeecC-------CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc
Q 036633          306 LFDKIEKANSSILNLLLKILKTDFNRKAT--RGIAAFDLT-------NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS  376 (550)
Q Consensus       306 llDEIeka~~~v~~~Ll~~ld~g~~~~l~--d~g~~vd~~-------~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~  376 (550)
                      +||||+++++++++.|+.+++++  + +.  .++..+...       +..||+|+|.....                 ..
T Consensus        70 ~lDEin~a~~~v~~~L~~ll~~~--~-~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~-----------------~~  129 (139)
T PF07728_consen   70 VLDEINRAPPEVLESLLSLLEER--R-IQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKG-----------------RK  129 (139)
T ss_dssp             EESSCGG--HHHHHTTHHHHSSS--E-EEE-TSSSEEE--TT------EEEEEEESSST-------------------TT
T ss_pred             EECCcccCCHHHHHHHHHHHhhC--c-ccccCCCcEEecCcccccccceEEEEEEcCCCCC-----------------cC
Confidence            99999999999999999999999  5 44  334444444       37899999986411                 35


Q ss_pred             CCChhhhhhc
Q 036633          377 LFKPSLLKLL  386 (550)
Q Consensus       377 ~f~p~ll~Ri  386 (550)
                      .++++|++||
T Consensus       130 ~l~~al~~Rf  139 (139)
T PF07728_consen  130 ELSPALLDRF  139 (139)
T ss_dssp             TTCHHHHTT-
T ss_pred             cCCHHHHhhC
Confidence            7889999986

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.50  E-value=1.8e-13  Score=156.32  Aligned_cols=178  Identities=16%  Similarity=0.210  Sum_probs=127.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      +.++||++-+..+...+.+.           .+.+++|+||||||||.+|+.+|+.+...+    .....++.+|++.+.
T Consensus       182 ~~~igr~~ei~~~~~~L~~~-----------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~  250 (731)
T TIGR02639       182 DPLIGREDELERTIQVLCRR-----------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL  250 (731)
T ss_pred             CcccCcHHHHHHHHHHHhcC-----------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh
Confidence            57999999999988777655           346889999999999999999999874311    013467888877654


Q ss_pred             chhhhhhHHh-------HHHHHHHhCCCCeEEeccccccC---------HHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633          282 ELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKAN---------SSILNLLLKILKTDFNRKATRGIAAFDLTNT  345 (550)
Q Consensus       282 ~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~---------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~  345 (550)
                      ..   +...|       .+.+.+...+..||||||||.+.         .++++.|.+.+++|  . +            
T Consensus       251 a~---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g--~-i------------  312 (731)
T TIGR02639       251 AG---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG--K-L------------  312 (731)
T ss_pred             hh---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC--C-e------------
Confidence            21   11223       22222333455899999999663         46789999999998  4 2            


Q ss_pred             EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      .+|.+||..  ..                +++|  +|+|.+|| +.|.+.   +++.++...|+......+..   .+  
T Consensus       313 ~~IgaTt~~--e~----------------~~~~~~d~al~rRf-~~i~v~---~p~~~~~~~il~~~~~~~e~---~~--  365 (731)
T TIGR02639       313 RCIGSTTYE--EY----------------KNHFEKDRALSRRF-QKIDVG---EPSIEETVKILKGLKEKYEE---FH--  365 (731)
T ss_pred             EEEEecCHH--HH----------------HHHhhhhHHHHHhC-ceEEeC---CCCHHHHHHHHHHHHHHHHh---cc--
Confidence            367777741  11                1233  78899999 589999   99999999999987765332   13  


Q ss_pred             ccccCCHHHHHHHHhcC
Q 036633          424 VIVCPSTSALVHIASNA  440 (550)
Q Consensus       424 ~~l~~~~~a~~~L~~~~  440 (550)
                       .+.++++++.+++..+
T Consensus       366 -~v~i~~~al~~~~~ls  381 (731)
T TIGR02639       366 -HVKYSDEALEAAVELS  381 (731)
T ss_pred             -CcccCHHHHHHHHHhh
Confidence             4589999999998743

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.50  E-value=1.5e-13  Score=142.96  Aligned_cols=158  Identities=23%  Similarity=0.311  Sum_probs=117.7

Q ss_pred             HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE
Q 036633          195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH  274 (550)
Q Consensus       195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~  274 (550)
                      ..+..+...+.+.++|+++++..+..++...             ++++|.||||||||.+|+.+|+.+..      +|++
T Consensus        13 ~~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~-------------~~vll~G~PG~gKT~la~~lA~~l~~------~~~~   73 (329)
T COG0714          13 EILGKIRSELEKVVVGDEEVIELALLALLAG-------------GHVLLEGPPGVGKTLLARALARALGL------PFVR   73 (329)
T ss_pred             hHHHHHHhhcCCeeeccHHHHHHHHHHHHcC-------------CCEEEECCCCccHHHHHHHHHHHhCC------CeEE
Confidence            4456777788888999999999988888866             58999999999999999999999988      9999


Q ss_pred             EecCCCCchhhhhhHHhHH-HHHH-------H--hCC--CC---eEEeccccccCHHHHHHHHHhhhhccccccccCCeE
Q 036633          275 FDMGNYTELESIKHFFDSL-AALV-------K--KRP--YS---VVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA  339 (550)
Q Consensus       275 id~s~~~~~~~~s~liG~l-t~al-------~--~~p--~~---VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~  339 (550)
                      +.|........   ++|.. ....       +  ..|  ..   |+|+|||.+++|.+|+.||++|+++  . ++..|..
T Consensus        74 i~~t~~l~p~d---~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~--~-vtv~~~~  147 (329)
T COG0714          74 IQCTPDLLPSD---LLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEER--Q-VTVPGLT  147 (329)
T ss_pred             EecCCCCCHHH---hcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCc--E-EEECCcC
Confidence            99997765443   36611 1111       0  011  24   9999999999999999999999998  6 6666444


Q ss_pred             -eecCCe-EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633          340 -FDLTNT-LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       340 -vd~~~~-iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~  393 (550)
                       +.+... ++|+|+|.+...-                ..-+++++++||.-.+.+.
T Consensus       148 ~~~~~~~f~viaT~Np~e~~g----------------~~~l~eA~ldRf~~~~~v~  187 (329)
T COG0714         148 TIRLPPPFIVIATQNPGEYEG----------------TYPLPEALLDRFLLRIYVD  187 (329)
T ss_pred             CcCCCCCCEEEEccCccccCC----------------CcCCCHHHHhhEEEEEecC
Confidence             666555 4566668432110                1345889999996555665

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.50  E-value=3.4e-14  Score=135.66  Aligned_cols=179  Identities=16%  Similarity=0.126  Sum_probs=81.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCC----c----------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDN----H----------  271 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~----~----------  271 (550)
                      ..|+||+.|+.++.-+..-.             .++||.||||||||++|+.++..|......+.    .          
T Consensus         3 ~dI~GQe~aKrAL~iAAaG~-------------h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~   69 (206)
T PF01078_consen    3 SDIVGQEEAKRALEIAAAGG-------------HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPD   69 (206)
T ss_dssp             CCSSSTHHHHHHHHHHHHCC---------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S--
T ss_pred             hhhcCcHHHHHHHHHHHcCC-------------CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCC
Confidence            57999999998877666533             59999999999999999999988865210000    0          


Q ss_pred             eeEEecCCCCchh---hhhhHHhH----HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee-cC
Q 036633          272 LIHFDMGNYTELE---SIKHFFDS----LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD-LT  343 (550)
Q Consensus       272 li~id~s~~~~~~---~~s~liG~----lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd-~~  343 (550)
                      -..+..--|...|   +...++|-    --+.+...-.+|+||||+-.+++.+++.|++.+++|.++ +...|..+. -.
T Consensus        70 ~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~-i~R~~~~~~~Pa  148 (206)
T PF01078_consen   70 EGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVT-ISRAGGSVTYPA  148 (206)
T ss_dssp             -EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEE-EEETTEEEEEB-
T ss_pred             CceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEE-EEECCceEEEec
Confidence            0000111111111   22344540    011222334589999999999999999999999999655 555544443 45


Q ss_pred             CeEEEEeCCCChHHHHHhhhhh--hHhhHHHHhccCCChhhhhhccceeEecCCCCCCHH
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTA--TYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDT  401 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~--~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e  401 (550)
                      +.++|+|+|...........+.  -...-.....+.++..|++|||-.|...   +++.+
T Consensus       149 ~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~---~~~~~  205 (206)
T PF01078_consen  149 RFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVP---RVSYE  205 (206)
T ss_dssp             -EEEEEEE-S--------------------------------------------------
T ss_pred             ccEEEEEecccccccccccccccccccccccccccccccccccccccccccc---ccccC
Confidence            6789999997543322110000  0011111223456778999999888887   77654

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.50  E-value=1.5e-12  Score=135.96  Aligned_cols=188  Identities=20%  Similarity=0.275  Sum_probs=128.9

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-CCCc------------
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-NDNH------------  271 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-~~~~------------  271 (550)
                      ...++||++++..+..++...   +       -|..+||+||+|+|||++|+.+|+.+..... ...+            
T Consensus        22 ~~~l~Gh~~a~~~L~~a~~~g---r-------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~   91 (351)
T PRK09112         22 NTRLFGHEEAEAFLAQAYREG---K-------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPV   91 (351)
T ss_pred             hhhccCcHHHHHHHHHHHHcC---C-------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHH
Confidence            356899999999999999876   2       3478999999999999999999999976110 0001            


Q ss_pred             -----------eeEEecCCCCchh-hhhhHHh-----HHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccc
Q 036633          272 -----------LIHFDMGNYTELE-SIKHFFD-----SLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFN  330 (550)
Q Consensus       272 -----------li~id~s~~~~~~-~~s~liG-----~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~  330 (550)
                                 +..+.-.. .++. ....-|+     .+.+.+..    ..+.||+|||+|.++++.++.||+.+++.  
T Consensus        92 c~~i~~~~hPdl~~l~~~~-~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp--  168 (351)
T PRK09112         92 WRQIAQGAHPNLLHITRPF-DEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP--  168 (351)
T ss_pred             HHHHHcCCCCCEEEeeccc-ccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC--
Confidence                       11111000 0000 0001111     33444333    34679999999999999999999999987  


Q ss_pred             cccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633          331 RKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA  410 (550)
Q Consensus       331 ~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~  410 (550)
                      .           .+++||+.|+..                     ....|.+.+|| ..+.|.   |++.+++..++...
T Consensus       169 p-----------~~~~fiLit~~~---------------------~~llptIrSRc-~~i~l~---pl~~~~~~~~L~~~  212 (351)
T PRK09112        169 P-----------ARALFILISHSS---------------------GRLLPTIRSRC-QPISLK---PLDDDELKKALSHL  212 (351)
T ss_pred             C-----------CCceEEEEECCh---------------------hhccHHHHhhc-cEEEec---CCCHHHHHHHHHHh
Confidence            5           566677776543                     23458899999 799999   99999999888752


Q ss_pred             HHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          411 CEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       411 l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                                 +. ...+++++...++..+-   | |.|...+.++.
T Consensus       213 -----------~~-~~~~~~~~~~~i~~~s~---G-~pr~Al~ll~~  243 (351)
T PRK09112        213 -----------GS-SQGSDGEITEALLQRSK---G-SVRKALLLLNY  243 (351)
T ss_pred             -----------hc-ccCCCHHHHHHHHHHcC---C-CHHHHHHHHhc
Confidence                       11 22367888888877543   5 55666666655

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.49  E-value=4.4e-13  Score=154.49  Aligned_cols=181  Identities=15%  Similarity=0.208  Sum_probs=125.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      ..|+||++.+.++...+.+.           +..+.+|+||||||||++|+.||+.+....    ..+..++.+|++.+.
T Consensus       187 d~~iGr~~ei~~~i~~l~r~-----------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~  255 (852)
T TIGR03345       187 DPVLGRDDEIRQMIDILLRR-----------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ  255 (852)
T ss_pred             CcccCCHHHHHHHHHHHhcC-----------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh
Confidence            57999999999988887765           235889999999999999999999885410    123457888888764


Q ss_pred             chhhh-----hhHHhHHHHHHHhCCCCeEEeccccccCH--------HHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633          282 ELESI-----KHFFDSLAALVKKRPYSVVLFDKIEKANS--------SILNLLLKILKTDFNRKATRGIAAFDLTNTLII  348 (550)
Q Consensus       282 ~~~~~-----s~liG~lt~al~~~p~~VlllDEIeka~~--------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI  348 (550)
                      .....     .++...+.+..+.....|||||||+.+..        ++-+.|++.++.|  . +            .+|
T Consensus       256 ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G--~-l------------~~I  320 (852)
T TIGR03345       256 AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG--E-L------------RTI  320 (852)
T ss_pred             cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC--C-e------------EEE
Confidence            22111     11211222222223457999999998753        4556899999999  4 2            277


Q ss_pred             EeCCCChHHHHHhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633          349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV  426 (550)
Q Consensus       349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l  426 (550)
                      .||+...                  .+++|  +|+|.+|| ++|.+.   +++.++...|+......+...   +   .+
T Consensus       321 gaTT~~e------------------~~~~~~~d~AL~rRf-~~i~v~---eps~~~~~~iL~~~~~~~e~~---~---~v  372 (852)
T TIGR03345       321 AATTWAE------------------YKKYFEKDPALTRRF-QVVKVE---EPDEETAIRMLRGLAPVLEKH---H---GV  372 (852)
T ss_pred             EecCHHH------------------HhhhhhccHHHHHhC-eEEEeC---CCCHHHHHHHHHHHHHhhhhc---C---CC
Confidence            7777421                  12344  79999999 699999   999999999975444332221   3   35


Q ss_pred             cCCHHHHHHHHhcC
Q 036633          427 CPSTSALVHIASNA  440 (550)
Q Consensus       427 ~~~~~a~~~L~~~~  440 (550)
                      .++++++.+++..+
T Consensus       373 ~i~d~al~~~~~ls  386 (852)
T TIGR03345       373 LILDEAVVAAVELS  386 (852)
T ss_pred             eeCHHHHHHHHHHc
Confidence            88999998888743

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2.7e-13  Score=147.42  Aligned_cols=194  Identities=22%  Similarity=0.296  Sum_probs=129.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ..|=|-++++..|.+.|...+.+.--+...-++ .-+||+||||||||.+||++|..+.-      +|+.+-..|+    
T Consensus       672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL------~FlSVKGPEL----  741 (953)
T KOG0736|consen  672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL------NFLSVKGPEL----  741 (953)
T ss_pred             hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee------eEEeecCHHH----
Confidence            567788999999999998853221112222244 78999999999999999999999876      7777765543    


Q ss_pred             hhhhHHh-------HHHHHHHhCCCCeEEeccccccCH-------------HHHHHHHHhhhhccccccccCCeEeecCC
Q 036633          285 SIKHFFD-------SLAALVKKRPYSVVLFDKIEKANS-------------SILNLLLKILKTDFNRKATRGIAAFDLTN  344 (550)
Q Consensus       285 ~~s~liG-------~lt~al~~~p~~VlllDEIeka~~-------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~  344 (550)
                       ....+|       ..-+..|...-+||||||+|.+-|             .|...||--|| |    +.|+    +...
T Consensus       742 -LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD-g----ls~~----~s~~  811 (953)
T KOG0736|consen  742 -LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD-G----LSDS----SSQD  811 (953)
T ss_pred             -HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh-c----ccCC----CCCc
Confidence             556677       222333443339999999998866             25555555554 3    4442    3456


Q ss_pred             eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCH-HHHHHHHHHHHHHHHHHhccC
Q 036633          345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLD-TTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~-e~i~~I~~~~l~~~~~~l~~~  421 (550)
                      ++||-+||.+                     ..++|+|+  +|||..+...   |-.. +....+++ .+.+        
T Consensus       812 VFViGATNRP---------------------DLLDpALLRPGRFDKLvyvG---~~~d~esk~~vL~-AlTr--------  858 (953)
T KOG0736|consen  812 VFVIGATNRP---------------------DLLDPALLRPGRFDKLVYVG---PNEDAESKLRVLE-ALTR--------  858 (953)
T ss_pred             eEEEecCCCc---------------------cccChhhcCCCccceeEEec---CCccHHHHHHHHH-HHHH--------
Confidence            7789999985                     46788888  9999988888   5444 44444433 3332        


Q ss_pred             CCccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                         ++.+++++ +..|++.|-+++..  -++..++..
T Consensus       859 ---kFkLdedVdL~eiAk~cp~~~TG--ADlYsLCSd  890 (953)
T KOG0736|consen  859 ---KFKLDEDVDLVEIAKKCPPNMTG--ADLYSLCSD  890 (953)
T ss_pred             ---HccCCCCcCHHHHHhhCCcCCch--hHHHHHHHH
Confidence               33455555 67778877644443  567666665

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2.1e-13  Score=149.55  Aligned_cols=192  Identities=20%  Similarity=0.263  Sum_probs=128.8

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCC-cCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~-~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      .+.|-+.++..+..++...+...-.+.. ..+| ..+||+||||||||.+|+++|..+..      +|+.++++++.   
T Consensus       243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~------~fi~v~~~~l~---  313 (494)
T COG0464         243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS------RFISVKGSELL---  313 (494)
T ss_pred             hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC------eEEEeeCHHHh---
Confidence            4556666776666666544110110110 1134 79999999999999999999998766      99999999774   


Q ss_pred             hhhhHHh--------HHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633          285 SIKHFFD--------SLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNT  345 (550)
Q Consensus       285 ~~s~liG--------~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~  345 (550)
                        ++++|        .|..|-...| +||||||||++-           ..+.+.||..++.-  .         ..+++
T Consensus       314 --sk~vGesek~ir~~F~~A~~~~p-~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~--e---------~~~~v  379 (494)
T COG0464         314 --SKWVGESEKNIRELFEKARKLAP-SIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGI--E---------KAEGV  379 (494)
T ss_pred             --ccccchHHHHHHHHHHHHHcCCC-cEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCC--C---------ccCce
Confidence              44555        3333433445 999999999763           25777888777533  2         22567


Q ss_pred             EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      ++|.|||..                     ..++|+++.  |+|.+|.|.   +.+.++...|+..++.+       .+.
T Consensus       380 ~vi~aTN~p---------------------~~ld~a~lR~gRfd~~i~v~---~pd~~~r~~i~~~~~~~-------~~~  428 (494)
T COG0464         380 LVIAATNRP---------------------DDLDPALLRPGRFDRLIYVP---LPDLEERLEIFKIHLRD-------KKP  428 (494)
T ss_pred             EEEecCCCc---------------------cccCHhhcccCccceEeecC---CCCHHHHHHHHHHHhcc-------cCC
Confidence            889999975                     466788887  999999999   99999999999998853       211


Q ss_pred             ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                       . -..+-..+.+++...   |..|.++..+++.
T Consensus       429 -~-~~~~~~~~~l~~~t~---~~sgadi~~i~~e  457 (494)
T COG0464         429 -P-LAEDVDLEELAEITE---GYSGADIAALVRE  457 (494)
T ss_pred             -c-chhhhhHHHHHHHhc---CCCHHHHHHHHHH
Confidence             1 122333445554211   1133678887776

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.48  E-value=4.1e-13  Score=143.30  Aligned_cols=196  Identities=18%  Similarity=0.219  Sum_probs=125.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchhh-----hcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAA-----KKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~-----~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..|.|.+..++.+.+++...+.+     ..|+.   .|..+||+||||||||++|+++|..+..      +|++++.+++
T Consensus       183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~---~p~gVLL~GPPGTGKT~LAraIA~el~~------~fi~V~~seL  253 (438)
T PTZ00361        183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK---PPKGVILYGPPGTGKTLLAKAVANETSA------TFLRVVGSEL  253 (438)
T ss_pred             HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC---CCcEEEEECCCCCCHHHHHHHHHHhhCC------CEEEEecchh
Confidence            45789999999999988654110     12332   3367899999999999999999998866      8999988876


Q ss_pred             Cchhh--hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633          281 TELES--IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLI  347 (550)
Q Consensus       281 ~~~~~--~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii  347 (550)
                      .....  ...++..+....+....+||||||||.+.           ..++..+++++..-  ..+.      .-.++.|
T Consensus       254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L--dg~~------~~~~V~V  325 (438)
T PTZ00361        254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL--DGFD------SRGDVKV  325 (438)
T ss_pred             hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH--hhhc------ccCCeEE
Confidence            43211  01111122222233334899999998652           34566666665321  0010      1135678


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                      |+|||..                     ..++|+++  +|+|..|.|.   +++.++...|+..++.+       ..   
T Consensus       326 I~ATNr~---------------------d~LDpaLlRpGRfd~~I~~~---~Pd~~~R~~Il~~~~~k-------~~---  371 (438)
T PTZ00361        326 IMATNRI---------------------ESLDPALIRPGRIDRKIEFP---NPDEKTKRRIFEIHTSK-------MT---  371 (438)
T ss_pred             EEecCCh---------------------HHhhHHhccCCeeEEEEEeC---CCCHHHHHHHHHHHHhc-------CC---
Confidence            9999963                     34567776  6999999999   99999999999876642       21   


Q ss_pred             ccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          426 VCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       426 l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        +++++ .+.++..+.   |.++.+++.++..
T Consensus       372 --l~~dvdl~~la~~t~---g~sgAdI~~i~~e  399 (438)
T PTZ00361        372 --LAEDVDLEEFIMAKD---ELSGADIKAICTE  399 (438)
T ss_pred             --CCcCcCHHHHHHhcC---CCCHHHHHHHHHH
Confidence              22221 334444322   3355888888775

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.47  E-value=1e-12  Score=137.86  Aligned_cols=156  Identities=21%  Similarity=0.323  Sum_probs=109.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-CCC--------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-NDN--------------  270 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-~~~--------------  270 (550)
                      ..|+||+.+++.+.+++...   +       -|..+||+||+|+||+++|..+|+.+...+. ...              
T Consensus        19 ~~iiGq~~~~~~L~~~~~~~---r-------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~   88 (365)
T PRK07471         19 TALFGHAAAEAALLDAYRSG---R-------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD   88 (365)
T ss_pred             hhccChHHHHHHHHHHHHcC---C-------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC
Confidence            57999999999999998876   1       3478999999999999999999999986210 000              


Q ss_pred             -------------ceeEEecCCCCchhh-hhhHHh-----HHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhh
Q 036633          271 -------------HLIHFDMGNYTELES-IKHFFD-----SLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKT  327 (550)
Q Consensus       271 -------------~li~id~s~~~~~~~-~s~liG-----~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~  327 (550)
                                   .+..+.-. +.++.. .+.-|+     .+.+.+..    ..+.||+|||+|.+++..++.||+.+++
T Consensus        89 c~~c~~i~~~~HPDl~~i~~~-~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe  167 (365)
T PRK07471         89 HPVARRIAAGAHGGLLTLERS-WNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE  167 (365)
T ss_pred             ChHHHHHHccCCCCeEEEecc-cccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence                         11111100 001000 001122     23333332    3346999999999999999999999998


Q ss_pred             ccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH
Q 036633          328 DFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR  407 (550)
Q Consensus       328 g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~  407 (550)
                      .  .           .+++||++|+...                     ...|.+.+|| ..+.|.   |++.+++..++
T Consensus       168 p--p-----------~~~~~IL~t~~~~---------------------~llpti~SRc-~~i~l~---~l~~~~i~~~L  209 (365)
T PRK07471        168 P--P-----------ARSLFLLVSHAPA---------------------RLLPTIRSRC-RKLRLR---PLAPEDVIDAL  209 (365)
T ss_pred             C--C-----------CCeEEEEEECCch---------------------hchHHhhccc-eEEECC---CCCHHHHHHHH
Confidence            7  5           5677888777542                     3457789999 799999   99999998887


Q ss_pred             HHH
Q 036633          408 EWA  410 (550)
Q Consensus       408 ~~~  410 (550)
                      ...
T Consensus       210 ~~~  212 (365)
T PRK07471        210 AAA  212 (365)
T ss_pred             HHh
Confidence            654

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.47  E-value=6e-13  Score=124.22  Aligned_cols=141  Identities=25%  Similarity=0.365  Sum_probs=95.2

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-----------------CCCce
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-----------------NDNHL  272 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-----------------~~~~l  272 (550)
                      ||+.+++.+.+.+...   +       -|..+||+||+|+||+++|..+|+.++....                 ....+
T Consensus         1 gq~~~~~~L~~~~~~~---~-------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~   70 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSG---R-------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDF   70 (162)
T ss_dssp             S-HHHHHHHHHHHHCT---C---------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTE
T ss_pred             CcHHHHHHHHHHHHcC---C-------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcce
Confidence            8999999999999866   1       3478999999999999999999999987421                 12334


Q ss_pred             eEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633          273 IHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLII  348 (550)
Q Consensus       273 i~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI  348 (550)
                      ..++-........+.... .+.+.+..    .++.|++||++|+++++.+|+||+.||+.  .           .+++||
T Consensus        71 ~~~~~~~~~~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep--p-----------~~~~fi  136 (162)
T PF13177_consen   71 IIIKPDKKKKSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP--P-----------ENTYFI  136 (162)
T ss_dssp             EEEETTTSSSSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST--T-----------TTEEEE
T ss_pred             EEEecccccchhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC--C-----------CCEEEE
Confidence            444433221111111111 33333333    34569999999999999999999999998  6           788888


Q ss_pred             EeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC
Q 036633          349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL  399 (550)
Q Consensus       349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~  399 (550)
                      ++|+..                     ..+.|.+++|| ..|.|.   |++
T Consensus       137 L~t~~~---------------------~~il~TI~SRc-~~i~~~---~ls  162 (162)
T PF13177_consen  137 LITNNP---------------------SKILPTIRSRC-QVIRFR---PLS  162 (162)
T ss_dssp             EEES-G---------------------GGS-HHHHTTS-EEEEE-------
T ss_pred             EEECCh---------------------HHChHHHHhhc-eEEecC---CCC
Confidence            888753                     45678899999 899999   875

...

>PRK08727 hypothetical protein; Validated

Probab=99.47  E-value=2.6e-12  Score=127.16  Aligned_cols=185  Identities=14%  Similarity=0.158  Sum_probs=124.9

Q ss_pred             hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633          204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~  283 (550)
                      +...++|.+.++..+..... .   .       ....++|+||||||||+++.+++..+..   .....+.+++.++.  
T Consensus        18 f~~f~~~~~n~~~~~~~~~~-~---~-------~~~~l~l~G~~G~GKThL~~a~~~~~~~---~~~~~~y~~~~~~~--   81 (233)
T PRK08727         18 FDSYIAAPDGLLAQLQALAA-G---Q-------SSDWLYLSGPAGTGKTHLALALCAAAEQ---AGRSSAYLPLQAAA--   81 (233)
T ss_pred             hhhccCCcHHHHHHHHHHHh-c---c-------CCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEeHHHhh--
Confidence            44567788776655432221 1   0       1247999999999999999999988766   44455666665432  


Q ss_pred             hhhhhHHhHHHHHHHh-CCCCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          284 ESIKHFFDSLAALVKK-RPYSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       284 ~~~s~liG~lt~al~~-~p~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                             +.+...+.. ....+|+|||++.+.  +.-+..|+.++...  +   .       +..-+|+|||.....+  
T Consensus        82 -------~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~--~---~-------~~~~vI~ts~~~p~~l--  140 (233)
T PRK08727         82 -------GRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNRA--R---A-------AGITLLYTARQMPDGL--  140 (233)
T ss_pred             -------hhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHH--H---H-------cCCeEEEECCCChhhh--
Confidence                   122222222 234699999999875  55566777777654  2   0       1223788888766544  


Q ss_pred             hhhhhhHhhHHHHhccCCChhhhhhc--cceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHh
Q 036633          361 VMLTATYGRVNEVTGSLFKPSLLKLL--DKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIAS  438 (550)
Q Consensus       361 ~~~~~~~~~~~~~l~~~f~p~ll~Ri--d~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~  438 (550)
                                     ..+.|++.+|+  ..++.|.   |++.+++..++......       .|+   .++++++++|+.
T Consensus       141 ---------------~~~~~dL~SRl~~~~~~~l~---~~~~e~~~~iL~~~a~~-------~~l---~l~~e~~~~La~  192 (233)
T PRK08727        141 ---------------ALVLPDLRSRLAQCIRIGLP---VLDDVARAAVLRERAQR-------RGL---ALDEAAIDWLLT  192 (233)
T ss_pred             ---------------hhhhHHHHHHHhcCceEEec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHH
Confidence                           34578999995  3578888   99999999999976543       344   899999999998


Q ss_pred             cCcccCCCcccHHHHHHcc
Q 036633          439 NAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       439 ~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++-   | ..|.+-+.++.
T Consensus       193 ~~~---r-d~r~~l~~L~~  207 (233)
T PRK08727        193 HGE---R-ELAGLVALLDR  207 (233)
T ss_pred             hCC---C-CHHHHHHHHHH
Confidence            643   3 44666666764

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.47  E-value=1.3e-12  Score=139.62  Aligned_cols=197  Identities=18%  Similarity=0.216  Sum_probs=130.3

Q ss_pred             hhcCcccCcHHHH-HHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          203 RLKKRVFGQNDAI-DVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       203 ~L~~~viGQ~~ai-~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .+...++|.+... ...+..+..         .|..+ .+++|+||||+|||+|++++++.+.... ....++.+++.++
T Consensus       108 tfd~fi~g~~n~~a~~~~~~~~~---------~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~  177 (405)
T TIGR00362       108 TFDNFVVGKSNRLAHAAALAVAE---------NPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKF  177 (405)
T ss_pred             cccccccCCcHHHHHHHHHHHHh---------CcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHH
Confidence            4556688876653 112222221         12333 6799999999999999999999986510 1346788887766


Q ss_pred             CchhhhhhH---HhHHHHHHHhCCCCeEEeccccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCCh
Q 036633          281 TELESIKHF---FDSLAALVKKRPYSVVLFDKIEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD  355 (550)
Q Consensus       281 ~~~~~~s~l---iG~lt~al~~~p~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~  355 (550)
                      ......+..   +..+.+.++.  ..+|+||||+.+..  ..+..|+.+++.-  .   .       .+..+|+|||...
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l~~~~~~~~~l~~~~n~~--~---~-------~~~~iiits~~~p  243 (405)
T TIGR00362       178 TNDFVNALRNNKMEEFKEKYRS--VDLLLIDDIQFLAGKERTQEEFFHTFNAL--H---E-------NGKQIVLTSDRPP  243 (405)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHh--CCEEEEehhhhhcCCHHHHHHHHHHHHHH--H---H-------CCCCEEEecCCCH
Confidence            432111000   0133333433  47999999997643  4667777777543  1   1       1123678888765


Q ss_pred             HHHHHhhhhhhHhhHHHHhccCCChhhhhhccc--eeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633          356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK--LVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL  433 (550)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~--ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~  433 (550)
                      ..+                 ..+.+.+.+|+..  ++.|.   |++.+++..|+...+..       .++   .++++++
T Consensus       244 ~~l-----------------~~l~~~l~SRl~~g~~v~i~---~pd~~~r~~il~~~~~~-------~~~---~l~~e~l  293 (405)
T TIGR00362       244 KEL-----------------PGLEERLRSRFEWGLVVDIE---PPDLETRLAILQKKAEE-------EGL---ELPDEVL  293 (405)
T ss_pred             HHH-----------------hhhhhhhhhhccCCeEEEeC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHH
Confidence            443                 2356789999964  78999   99999999999887754       444   7899999


Q ss_pred             HHHHhcCcccCCCcccHHHHHHcc
Q 036633          434 VHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       434 ~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++|+.+.-   | |+|.|..++.+
T Consensus       294 ~~ia~~~~---~-~~r~l~~~l~~  313 (405)
T TIGR00362       294 EFIAKNIR---S-NVRELEGALNR  313 (405)
T ss_pred             HHHHHhcC---C-CHHHHHHHHHH
Confidence            99998532   5 88999999886

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=5.1e-13  Score=140.04  Aligned_cols=189  Identities=21%  Similarity=0.237  Sum_probs=124.4

Q ss_pred             cCcccCcHHHHHHHHH---HHhcch-hhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          205 KKRVFGQNDAIDVIFE---ALTKPK-AAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~---~l~~~~-~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      -+.|.|.|+|+..+-+   .++... +.+.|..   -|.-+||+||||||||.|||++|-....      ||+....|+|
T Consensus       303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGK---LPKGVLLvGPPGTGKTlLARAvAGEA~V------PFF~~sGSEF  373 (752)
T KOG0734|consen  303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGK---LPKGVLLVGPPGTGKTLLARAVAGEAGV------PFFYASGSEF  373 (752)
T ss_pred             cccccChHHHHHHHHHHHHHhcCcHHhhhccCc---CCCceEEeCCCCCchhHHHHHhhcccCC------CeEeccccch
Confidence            4678999999965544   444330 0133332   3467899999999999999999987666      9999998888


Q ss_pred             CchhhhhhHHh-------HHHHHHHhCCCCeEEeccccccC----H-------HHHHHHHHhhhhccccccccCCeEeec
Q 036633          281 TELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKAN----S-------SILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       281 ~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~----~-------~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      -+     .++|       .|-.+.+.+..|||||||||...    +       ..+|.||--|| |    +.-+      
T Consensus       374 dE-----m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmD-G----F~qN------  437 (752)
T KOG0734|consen  374 DE-----MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMD-G----FKQN------  437 (752)
T ss_pred             hh-----hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhc-C----cCcC------
Confidence            43     3344       34444444444999999998542    1       23455554443 4    2222      


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                      ...|||.+||..                     ..++++|.  +|||..|..+   ..+-.-..+|+..++.+       
T Consensus       438 eGiIvigATNfp---------------------e~LD~AL~RPGRFD~~v~Vp---~PDv~GR~eIL~~yl~k-------  486 (752)
T KOG0734|consen  438 EGIIVIGATNFP---------------------EALDKALTRPGRFDRHVTVP---LPDVRGRTEILKLYLSK-------  486 (752)
T ss_pred             CceEEEeccCCh---------------------hhhhHHhcCCCccceeEecC---CCCcccHHHHHHHHHhc-------
Confidence            246788899985                     23445555  8999999888   66777788899988853       


Q ss_pred             CCCccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        +   ..++++ ...|+. +.|  |.+|-+|.+.+++
T Consensus       487 --i---~~~~~VD~~iiAR-GT~--GFsGAdLaNlVNq  516 (752)
T KOG0734|consen  487 --I---PLDEDVDPKIIAR-GTP--GFSGADLANLVNQ  516 (752)
T ss_pred             --C---CcccCCCHhHhcc-CCC--CCchHHHHHHHHH
Confidence              2   233333 233444 555  4455889999987

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=4.6e-13  Score=142.39  Aligned_cols=159  Identities=21%  Similarity=0.288  Sum_probs=119.2

Q ss_pred             cccCcHHHHHHHHHHHhcchh----hhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          207 RVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      .+=|-+..+..++..+...++    +..|+    +| .-+||+||||||||.||++||..+.-      ||+.++..++ 
T Consensus       191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv----~PprGvLlHGPPGCGKT~lA~AiAgel~v------Pf~~isApei-  259 (802)
T KOG0733|consen  191 DIGGLDKTLAELCELIIHIKHPEVFSSLGV----RPPRGVLLHGPPGCGKTSLANAIAGELGV------PFLSISAPEI-  259 (802)
T ss_pred             hccChHHHHHHHHHHHHHhcCchhHhhcCC----CCCCceeeeCCCCccHHHHHHHHhhhcCC------ceEeecchhh-
Confidence            456777888777777654311    24455    45 68999999999999999999999988      9999998775 


Q ss_pred             chhhhhhHHh--------HHHHHHHhCCCCeEEeccccccCH-----------HHHHHHHHhhhhccccccccCCeEeec
Q 036633          282 ELESIKHFFD--------SLAALVKKRPYSVVLFDKIEKANS-----------SILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       282 ~~~~~s~liG--------~lt~al~~~p~~VlllDEIeka~~-----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                          +|..-|        .|.+|....| +||||||||...|           .+...||..||+=.+. -++ |     
T Consensus       260 ----vSGvSGESEkkiRelF~~A~~~aP-civFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~~-g-----  327 (802)
T KOG0733|consen  260 ----VSGVSGESEKKIRELFDQAKSNAP-CIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE-KTK-G-----  327 (802)
T ss_pred             ----hcccCcccHHHHHHHHHHHhccCC-eEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc-ccC-C-----
Confidence                333333        5566666677 9999999997765           4778888888865222 111 1     


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACE  412 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~  412 (550)
                      ..++||.+||.+                     ..+.|+|.  +|||.-|.+.   -.++....+|++..+.
T Consensus       328 ~~VlVIgATnRP---------------------DslDpaLRRaGRFdrEI~l~---vP~e~aR~~IL~~~~~  375 (802)
T KOG0733|consen  328 DPVLVIGATNRP---------------------DSLDPALRRAGRFDREICLG---VPSETAREEILRIICR  375 (802)
T ss_pred             CCeEEEecCCCC---------------------cccCHHHhccccccceeeec---CCchHHHHHHHHHHHh
Confidence            347899999986                     46778887  8999999999   7788888888887774

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.45  E-value=7.2e-13  Score=156.25  Aligned_cols=169  Identities=19%  Similarity=0.199  Sum_probs=108.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh-------------h--------h---------h-
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE-------------S--------I---------K-  287 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~-------------~--------~---------s-  287 (550)
                      ..+||+||||||||++|++||..++.      ||+.++++++.+..             +        +         . 
T Consensus      1631 KGILLiGPPGTGKTlLAKALA~es~V------PFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~ 1704 (2281)
T CHL00206       1631 RGILVIGSIGTGRSYLVKYLATNSYV------PFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTM 1704 (2281)
T ss_pred             CceEEECCCCCCHHHHHHHHHHhcCC------ceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhh
Confidence            68999999999999999999999887      99999998876421             0        0         0 


Q ss_pred             -------hHH--h------HHHHHHHhCCCCeEEeccccccCHH-----HHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633          288 -------HFF--D------SLAALVKKRPYSVVLFDKIEKANSS-----ILNLLLKILKTDFNRKATRGIAAFDLTNTLI  347 (550)
Q Consensus       288 -------~li--G------~lt~al~~~p~~VlllDEIeka~~~-----v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii  347 (550)
                             ...  |      .+..|-+..| |||+|||||.+.+.     .++.|+..|+..  .      ....-++++|
T Consensus      1705 ~n~~~~~m~~~e~~~rIr~lFelARk~SP-CIIFIDEIDaL~~~ds~~ltL~qLLneLDg~--~------~~~s~~~VIV 1775 (2281)
T CHL00206       1705 MNALTMDMMPKIDRFYITLQFELAKAMSP-CIIWIPNIHDLNVNESNYLSLGLLVNSLSRD--C------ERCSTRNILV 1775 (2281)
T ss_pred             cchhhhhhhhhhhHHHHHHHHHHHHHCCC-eEEEEEchhhcCCCccceehHHHHHHHhccc--c------ccCCCCCEEE
Confidence                   000  1      2333333455 99999999988753     356777777633  1      0112357889


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                      |+|||.+                     ...+|+|+  +|+|..|.+.   .++.....+++...+.       ..|+ .
T Consensus      1776 IAATNRP---------------------D~LDPALLRPGRFDR~I~Ir---~Pd~p~R~kiL~ILl~-------tkg~-~ 1823 (2281)
T CHL00206       1776 IASTHIP---------------------QKVDPALIAPNKLNTCIKIR---RLLIPQQRKHFFTLSY-------TRGF-H 1823 (2281)
T ss_pred             EEeCCCc---------------------ccCCHhHcCCCCCCeEEEeC---CCCchhHHHHHHHHHh-------hcCC-C
Confidence            9999985                     57899999  5999999998   5554444444432221       1233 2


Q ss_pred             ccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          426 VCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +.-+..-.+.++... +  |.+|++|..+++.
T Consensus      1824 L~~~~vdl~~LA~~T-~--GfSGADLanLvNE 1852 (2281)
T CHL00206       1824 LEKKMFHTNGFGSIT-M--GSNARDLVALTNE 1852 (2281)
T ss_pred             CCcccccHHHHHHhC-C--CCCHHHHHHHHHH
Confidence            221111244555532 2  4455888877654

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.45  E-value=2.3e-12  Score=133.15  Aligned_cols=155  Identities=17%  Similarity=0.241  Sum_probs=109.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC--CCCCceeEEecCCCCch
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN--DNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~--~~~~~li~id~s~~~~~  283 (550)
                      +.|+||+.+++.+..++...          +-|..+||+||+|+|||++|+.+|+.+.+..  .....+..+...+ ...
T Consensus         4 ~~i~g~~~~~~~l~~~~~~~----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~-~~~   72 (313)
T PRK05564          4 HTIIGHENIKNRIKNSIIKN----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN-KKS   72 (313)
T ss_pred             hhccCcHHHHHHHHHHHHcC----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-CCC
Confidence            46899999999999988765          1347899999999999999999999987621  0111222232110 000


Q ss_pred             hhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633          284 ESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY  359 (550)
Q Consensus       284 ~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~  359 (550)
                      -.+.. +-.+.+.+...|    +.|+++|++|+++++.+|.||+.+++.  .           .+++||++|+..     
T Consensus        73 i~v~~-ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep--p-----------~~t~~il~~~~~-----  133 (313)
T PRK05564         73 IGVDD-IRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP--P-----------KGVFIILLCENL-----  133 (313)
T ss_pred             CCHHH-HHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC--C-----------CCeEEEEEeCCh-----
Confidence            01111 113333333344    569999999999999999999999987  5           667788877532     


Q ss_pred             HhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633          360 EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA  410 (550)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~  410 (550)
                                      ..+.|.+.+|| .++.|.   +++.+++...+...
T Consensus       134 ----------------~~ll~TI~SRc-~~~~~~---~~~~~~~~~~l~~~  164 (313)
T PRK05564        134 ----------------EQILDTIKSRC-QIYKLN---RLSKEEIEKFISYK  164 (313)
T ss_pred             ----------------HhCcHHHHhhc-eeeeCC---CcCHHHHHHHHHHH
Confidence                            25567899999 799999   99999987776654

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.45  E-value=1.8e-12  Score=133.49  Aligned_cols=157  Identities=20%  Similarity=0.276  Sum_probs=111.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------CCCCcee
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------DNDNHLI  273 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------~~~~~li  273 (550)
                      +.|+||++++..+..++...   +       -|..+||+||+|+||+++|.++|+.+.+.+            .....++
T Consensus         4 ~~iiGq~~~~~~L~~~i~~~---r-------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~   73 (314)
T PRK07399          4 ANLIGQPLAIELLTAAIKQN---R-------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLL   73 (314)
T ss_pred             HHhCCHHHHHHHHHHHHHhC---C-------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEE
Confidence            57999999999999999876   2       347999999999999999999999998621            0001112


Q ss_pred             EEecCCCCchhhh--------------hhHHh-----HHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccc
Q 036633          274 HFDMGNYTELESI--------------KHFFD-----SLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFN  330 (550)
Q Consensus       274 ~id~s~~~~~~~~--------------s~liG-----~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~  330 (550)
                      .+......+...+              ...|+     .+.+.+...    ++.|++||++|++++..+|.||+.||+.  
T Consensus        74 ~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP--  151 (314)
T PRK07399         74 WVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP--  151 (314)
T ss_pred             EEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC--
Confidence            1111000000000              00111     445555544    4579999999999999999999999987  


Q ss_pred             cccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633          331 RKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA  410 (550)
Q Consensus       331 ~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~  410 (550)
                                  .+++||++|+..                     ..+-|.+.+|| .++.|.   |++.+++..++...
T Consensus       152 ------------p~~~fILi~~~~---------------------~~Ll~TI~SRc-q~i~f~---~l~~~~~~~~L~~~  194 (314)
T PRK07399        152 ------------GNGTLILIAPSP---------------------ESLLPTIVSRC-QIIPFY---RLSDEQLEQVLKRL  194 (314)
T ss_pred             ------------CCCeEEEEECCh---------------------HhCcHHHHhhc-eEEecC---CCCHHHHHHHHHHh
Confidence                        245677776632                     35667899999 899999   99999998888764


Q ss_pred             H
Q 036633          411 C  411 (550)
Q Consensus       411 l  411 (550)
                      .
T Consensus       195 ~  195 (314)
T PRK07399        195 G  195 (314)
T ss_pred             h
Confidence            3

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.45  E-value=5.5e-13  Score=144.32  Aligned_cols=170  Identities=19%  Similarity=0.231  Sum_probs=110.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEe
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFD  276 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id  276 (550)
                      ..|.|.+..++.+..++.....     ...|+.   .|..+||+||||||||++|+++|+.+....    .....|+.+.
T Consensus       182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~  258 (512)
T TIGR03689       182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK  258 (512)
T ss_pred             HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence            4588999999999998864311     122332   236799999999999999999999985410    0012233444


Q ss_pred             cCCCCchh--hhhhHHhHHHHHHHh----CCCCeEEeccccccCH------------HHHHHHHHhhhhccccccccCCe
Q 036633          277 MGNYTELE--SIKHFFDSLAALVKK----RPYSVVLFDKIEKANS------------SILNLLLKILKTDFNRKATRGIA  338 (550)
Q Consensus       277 ~s~~~~~~--~~s~liG~lt~al~~----~p~~VlllDEIeka~~------------~v~~~Ll~~ld~g~~~~l~d~g~  338 (550)
                      .+++....  ...+.+..+.+..+.    ...+||||||+|.+.+            .+.+.||..++.-  .       
T Consensus       259 ~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl--~-------  329 (512)
T TIGR03689       259 GPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV--E-------  329 (512)
T ss_pred             chhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc--c-------
Confidence            33322110  011111122222222    2348999999997531            2456667666532  1       


Q ss_pred             EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHH
Q 036633          339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEE  413 (550)
Q Consensus       339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~  413 (550)
                        ...+.+||+|||..                     ..++|+++.  |||..|.|.   +++.++...|+..++..
T Consensus       330 --~~~~ViVI~ATN~~---------------------d~LDpALlRpGRfD~~I~~~---~Pd~e~r~~Il~~~l~~  380 (512)
T TIGR03689       330 --SLDNVIVIGASNRE---------------------DMIDPAILRPGRLDVKIRIE---RPDAEAAADIFSKYLTD  380 (512)
T ss_pred             --cCCceEEEeccCCh---------------------hhCCHhhcCccccceEEEeC---CCCHHHHHHHHHHHhhc
Confidence              12567899999974                     467899986  999999999   99999999999998853

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.44  E-value=1.4e-12  Score=133.61  Aligned_cols=176  Identities=12%  Similarity=0.110  Sum_probs=116.6

Q ss_pred             ccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhh
Q 036633          208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK  287 (550)
Q Consensus       208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s  287 (550)
                      ++=-...++++.-.+.+.   ...+..-+.|..++|+||||||||.+|+++|..+..      +++.++.+++.     +
T Consensus       121 ~~~~p~f~dk~~~hi~kn---~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~------~~i~vsa~eL~-----s  186 (413)
T PLN00020        121 YYIAPAFMDKVAVHIAKN---FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGI------EPIVMSAGELE-----S  186 (413)
T ss_pred             cccCHHHHHHHHHHHHhh---hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC------CeEEEEHHHhh-----c
Confidence            333455566666666655   332222234489999999999999999999999987      89999998874     3


Q ss_pred             hHHh--------HHHHHHH-----hCCCCeEEeccccccCH-----------HH-HHHHHHhhhhccccccccCC---eE
Q 036633          288 HFFD--------SLAALVK-----KRPYSVVLFDKIEKANS-----------SI-LNLLLKILKTDFNRKATRGI---AA  339 (550)
Q Consensus       288 ~liG--------~lt~al~-----~~p~~VlllDEIeka~~-----------~v-~~~Ll~~ld~g~~~~l~d~g---~~  339 (550)
                      .++|        .+..|-.     .+| +||||||||..-+           .+ ...|+.++|+-  ..+...|   ..
T Consensus       187 k~vGEsEk~IR~~F~~A~~~a~~~~aP-cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p--~~v~l~G~w~~~  263 (413)
T PLN00020        187 ENAGEPGKLIRQRYREAADIIKKKGKM-SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNP--TNVSLGGDWREK  263 (413)
T ss_pred             CcCCcHHHHHHHHHHHHHHHhhccCCC-eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCC--cccccccccccc
Confidence            3344        3333322     235 8999999997643           12 35788888753  1011101   11


Q ss_pred             eecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 036633          340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRR  417 (550)
Q Consensus       340 vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~  417 (550)
                      -...+++||+|||..                     ..++|+|+.  |||..+  .   ..+.++...|++..+.+    
T Consensus       264 ~~~~~V~VIaTTNrp---------------------d~LDpALlRpGRfDk~i--~---lPd~e~R~eIL~~~~r~----  313 (413)
T PLN00020        264 EEIPRVPIIVTGNDF---------------------STLYAPLIRDGRMEKFY--W---APTREDRIGVVHGIFRD----  313 (413)
T ss_pred             ccCCCceEEEeCCCc---------------------ccCCHhHcCCCCCCcee--C---CCCHHHHHHHHHHHhcc----
Confidence            123568899999975                     467889996  999864  3   45899999999877732    


Q ss_pred             hccCCCccccCCHHHHHHHHh
Q 036633          418 NNDSKAVIVCPSTSALVHIAS  438 (550)
Q Consensus       418 l~~~~~~~l~~~~~a~~~L~~  438 (550)
                         .     .++..-+..|++
T Consensus       314 ---~-----~l~~~dv~~Lv~  326 (413)
T PLN00020        314 ---D-----GVSREDVVKLVD  326 (413)
T ss_pred             ---C-----CCCHHHHHHHHH
Confidence               2     345566666776

>PRK05642 DNA replication initiation factor; Validated

Probab=99.44  E-value=4.6e-12  Score=125.38  Aligned_cols=162  Identities=12%  Similarity=0.177  Sum_probs=114.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccC--HH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKAN--SS  316 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~--~~  316 (550)
                      ..++|+||+|||||+|+++++..+..   .....+.+++.++...      ...+.+.++.  ..+|+||+++...  +.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~---~~~~v~y~~~~~~~~~------~~~~~~~~~~--~d~LiiDDi~~~~~~~~  114 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQ---RGEPAVYLPLAELLDR------GPELLDNLEQ--YELVCLDDLDVIAGKAD  114 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEeeHHHHHhh------hHHHHHhhhh--CCEEEEechhhhcCChH
Confidence            68899999999999999999987754   3446777887665421      1123333443  3599999998664  56


Q ss_pred             HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--ceeEecC
Q 036633          317 ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLVVIDL  394 (550)
Q Consensus       317 v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii~f~~  394 (550)
                      .+..|+.+++.-  .   +       ++..+|+||+.....+                 ..+.|++.+|+.  .++.+. 
T Consensus       115 ~~~~Lf~l~n~~--~---~-------~g~~ilits~~~p~~l-----------------~~~~~~L~SRl~~gl~~~l~-  164 (234)
T PRK05642        115 WEEALFHLFNRL--R---D-------SGRRLLLAASKSPREL-----------------PIKLPDLKSRLTLALVFQMR-  164 (234)
T ss_pred             HHHHHHHHHHHH--H---h-------cCCEEEEeCCCCHHHc-----------------CccCccHHHHHhcCeeeecC-
Confidence            667788777532  1   1       1234788888755332                 345799999995  466678 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          395 AVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       395 ~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        |++.+++..++......       .|+   .+++++++||+.+.-   | ++|.+...++.
T Consensus       165 --~~~~e~~~~il~~ka~~-------~~~---~l~~ev~~~L~~~~~---~-d~r~l~~~l~~  211 (234)
T PRK05642        165 --GLSDEDKLRALQLRASR-------RGL---HLTDEVGHFILTRGT---R-SMSALFDLLER  211 (234)
T ss_pred             --CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHhcC---C-CHHHHHHHHHH
Confidence              99999999998865422       344   789999999998653   4 66989988886

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.44  E-value=2.6e-12  Score=129.35  Aligned_cols=111  Identities=14%  Similarity=0.178  Sum_probs=87.6

Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc-cCCChh
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG-SLFKPS  381 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~-~~f~p~  381 (550)
                      +|+|+||++-++-+.+..|.+.+++.  -            --||||+||.|-..+..   ++       ... ..++.+
T Consensus       293 GVLFIDEvHmLDIE~FsFlnrAlEse--~------------aPIii~AtNRG~~kiRG---Td-------~~sPhGIP~D  348 (450)
T COG1224         293 GVLFIDEVHMLDIECFSFLNRALESE--L------------APIIILATNRGMTKIRG---TD-------IESPHGIPLD  348 (450)
T ss_pred             ceEEEechhhhhHHHHHHHHHHhhcc--c------------CcEEEEEcCCceeeecc---cC-------CcCCCCCCHh
Confidence            79999999999999999999999987  2            24699999998766533   10       001 246889


Q ss_pred             hhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          382 LLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       382 ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      |++|+ -||...   |++.++++.|+......       .   .+.++++|+++|++.+.      -..|+.+++-
T Consensus       349 lLDRl-lII~t~---py~~~EireIi~iRa~e-------e---~i~l~~~Ale~L~~ig~------etSLRYa~qL  404 (450)
T COG1224         349 LLDRL-LIISTR---PYSREEIREIIRIRAKE-------E---DIELSDDALEYLTDIGE------ETSLRYAVQL  404 (450)
T ss_pred             hhhhe-eEEecC---CCCHHHHHHHHHHhhhh-------h---ccccCHHHHHHHHhhch------hhhHHHHHHh
Confidence            99999 899999   99999999999987643       4   44899999999998643      2556666665

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.44  E-value=2.5e-12  Score=122.86  Aligned_cols=146  Identities=24%  Similarity=0.287  Sum_probs=101.4

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------CCCceeEEecCCCCchhhhhhHHhHHHHHHHh
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNND------------------NDNHLIHFDMGNYTELESIKHFFDSLAALVKK  299 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------~~~~li~id~s~~~~~~~~s~liG~lt~al~~  299 (550)
                      |.++||+||+|+|||++|+.+++.+.....                  ....+..++...-  ...+. -+-.+.+.+..
T Consensus        14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~--~~~~~-~i~~i~~~~~~   90 (188)
T TIGR00678        14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ--SIKVD-QVRELVEFLSR   90 (188)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC--cCCHH-HHHHHHHHHcc
Confidence            378999999999999999999999976200                  0011222221110  00110 11123444443


Q ss_pred             ----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc
Q 036633          300 ----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG  375 (550)
Q Consensus       300 ----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~  375 (550)
                          .++.||+|||+++++++.++.|+..+++.  .           .++++|+++|..                     
T Consensus        91 ~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~--~-----------~~~~~il~~~~~---------------------  136 (188)
T TIGR00678        91 TPQESGRRVVIIEDAERMNEAAANALLKTLEEP--P-----------PNTLFILITPSP---------------------  136 (188)
T ss_pred             CcccCCeEEEEEechhhhCHHHHHHHHHHhcCC--C-----------CCeEEEEEECCh---------------------
Confidence                34569999999999999999999999887  5           567788877632                     


Q ss_pred             cCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcC
Q 036633          376 SLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNA  440 (550)
Q Consensus       376 ~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~  440 (550)
                      ..+.+.+.+|+ .++.|.   |++.+++..++...           |+     ++++++.|+..+
T Consensus       137 ~~l~~~i~sr~-~~~~~~---~~~~~~~~~~l~~~-----------gi-----~~~~~~~i~~~~  181 (188)
T TIGR00678       137 EKLLPTIRSRC-QVLPFP---PLSEEALLQWLIRQ-----------GI-----SEEAAELLLALA  181 (188)
T ss_pred             HhChHHHHhhc-EEeeCC---CCCHHHHHHHHHHc-----------CC-----CHHHHHHHHHHc
Confidence            24567899999 799999   99999987776543           34     788899988754

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=99.43  E-value=3.4e-13  Score=122.43  Aligned_cols=131  Identities=23%  Similarity=0.320  Sum_probs=99.9

Q ss_pred             cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhh
Q 036633          209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH  288 (550)
Q Consensus       209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~  288 (550)
                      ||++.+++.+.+.+.+.   .      ....+++++|++||||+.+|+.|+.....   ...+|+.++|....       
T Consensus         1 vG~S~~~~~l~~~l~~~---a------~~~~pvli~GE~GtGK~~~A~~lh~~~~~---~~~~~~~~~~~~~~-------   61 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERL---A------KSSSPVLITGEPGTGKSLLARALHRYSGR---ANGPFIVIDCASLP-------   61 (138)
T ss_dssp             --SCHHHHHHHHHHHHH---H------CSSS-EEEECCTTSSHHHHHHCCHHTTTT---CCS-CCCCCHHCTC-------
T ss_pred             CCCCHHHHHHHHHHHHH---h------CCCCcEEEEcCCCCCHHHHHHHHHhhcCc---cCCCeEEechhhCc-------
Confidence            69999999999999876   1      12268999999999999999999998877   77899999998865       


Q ss_pred             HHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHh
Q 036633          289 FFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYG  368 (550)
Q Consensus       289 liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~  368 (550)
                           .+.+.....++++|+||+.++++.|..|++.++... .           .++.+|+||..+......        
T Consensus        62 -----~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~-~-----------~~~RlI~ss~~~l~~l~~--------  116 (138)
T PF14532_consen   62 -----AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE-R-----------SNVRLIASSSQDLEELVE--------  116 (138)
T ss_dssp             -----HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT-T-----------TTSEEEEEECC-CCCHHH--------
T ss_pred             -----HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC-C-----------CCeEEEEEeCCCHHHHhh--------
Confidence                 122333467899999999999999999999998651 1           345689988877655433        


Q ss_pred             hHHHHhccCCChhhhhhccce
Q 036633          369 RVNEVTGSLFKPSLLKLLDKL  389 (550)
Q Consensus       369 ~~~~~l~~~f~p~ll~Rid~i  389 (550)
                            ...|.++|+.|++..
T Consensus       117 ------~~~~~~~L~~~l~~~  131 (138)
T PF14532_consen  117 ------EGRFSPDLYYRLSQL  131 (138)
T ss_dssp             ------HSTHHHHHHHHCSTC
T ss_pred             ------ccchhHHHHHHhCCC
Confidence                  468899999999643

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=9.1e-13  Score=126.86  Aligned_cols=144  Identities=25%  Similarity=0.395  Sum_probs=103.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..|=|-+--++.|.+++...+-     ..-|+-   -|..+|++||||||||.||+++|.....      .||++..|+|
T Consensus       155 ~diggld~qkqeireavelplt~~~ly~qigid---pprgvllygppg~gktml~kava~~t~a------~firvvgsef  225 (408)
T KOG0727|consen  155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGID---PPRGVLLYGPPGTGKTMLAKAVANHTTA------AFIRVVGSEF  225 (408)
T ss_pred             cccccchhhHHHHHHHHhccchHHHHHHHhCCC---CCcceEEeCCCCCcHHHHHHHHhhccch------heeeeccHHH
Confidence            4566777777777777765421     122332   2367899999999999999999988655      9999999998


Q ss_pred             CchhhhhhHHh-------HHHHHHHhCCCCeEEeccccc-----------cCHHHHHHHHHhhhhccccccccC-CeEee
Q 036633          281 TELESIKHFFD-------SLAALVKKRPYSVVLFDKIEK-----------ANSSILNLLLKILKTDFNRKATRG-IAAFD  341 (550)
Q Consensus       281 ~~~~~~s~liG-------~lt~al~~~p~~VlllDEIek-----------a~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd  341 (550)
                           +.+.+|       ..-...+.+..++||+|||+.           ++.++|.+|+.++..=      || ...  
T Consensus       226 -----vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqm------dgfdq~--  292 (408)
T KOG0727|consen  226 -----VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQM------DGFDQT--  292 (408)
T ss_pred             -----HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhc------cCcCcc--
Confidence                 556666       222223344448999999984           4678999999988421      22 222  


Q ss_pred             cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEec
Q 036633          342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVID  393 (550)
Q Consensus       342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~  393 (550)
                       .|+-+||+||..                     ..+.|+++  +|+|.-|.|+
T Consensus       293 -~nvkvimatnra---------------------dtldpallrpgrldrkiefp  324 (408)
T KOG0727|consen  293 -TNVKVIMATNRA---------------------DTLDPALLRPGRLDRKIEFP  324 (408)
T ss_pred             -cceEEEEecCcc---------------------cccCHhhcCCccccccccCC
Confidence             355589999974                     57788888  8999999997

>TIGR00368 Mg chelatase-related protein

Probab=99.43  E-value=2.4e-12  Score=139.92  Aligned_cols=232  Identities=15%  Similarity=0.057  Sum_probs=134.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-------------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-------------------  266 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-------------------  266 (550)
                      ..|+||+.++..+..++...             .+++|.||||+|||++|+.++..+....                   
T Consensus       192 ~dv~Gq~~~~~al~~aa~~g-------------~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~  258 (499)
T TIGR00368       192 KDIKGQQHAKRALEIAAAGG-------------HNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLID  258 (499)
T ss_pred             HHhcCcHHHHhhhhhhccCC-------------CEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcc
Confidence            56899999987655544322             5899999999999999999998765410                   


Q ss_pred             ---CCCCceeEEecCCCCchhhhhhHHh----HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeE
Q 036633          267 ---DNDNHLIHFDMGNYTELESIKHFFD----SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA  339 (550)
Q Consensus       267 ---~~~~~li~id~s~~~~~~~~s~liG----~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~  339 (550)
                         ....||...+++..     ...++|    .-.+.+....++|+||||++++++.+|+.|++.|++|.+. +...|..
T Consensus       259 ~~~~~~~Pf~~p~~s~s-----~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~-i~r~g~~  332 (499)
T TIGR00368       259 RKQIKQRPFRSPHHSAS-----KPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSIS-ISRASAK  332 (499)
T ss_pred             ccccccCCccccccccc-----hhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEE-EEecCcc
Confidence               00122222222211     122333    1122344456689999999999999999999999999433 3333322


Q ss_pred             eec-CCeEEEEeCCCChHHHHHh---hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHH------------
Q 036633          340 FDL-TNTLIIMTSDLKDEQVYEV---MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTR------------  403 (550)
Q Consensus       340 vd~-~~~iiI~TsN~g~~~~~~~---~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i------------  403 (550)
                      +.+ .+..+|+++|.........   .+.-+...+. .....+++.|++|||-++.+.   +++.+++            
T Consensus       333 ~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~-~y~~~is~pllDR~dl~~~~~---~~~~~~l~~~~~~e~s~~i  408 (499)
T TIGR00368       333 IFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQIS-RYWNKLSGPFLDRIDLSVEVP---LLPPEKLLSTGSGESSAEV  408 (499)
T ss_pred             eeccCCeEEEEecCCcccCcCCCCcccccCCHHHHH-HHhhhccHhHHhhCCEEEEEc---CCCHHHHhccCCCCCHHHH
Confidence            223 5677999999742111100   0000111111 112467889999999998988   7765544            


Q ss_pred             HHHHHHHHHHHHHHhccC-CCc-c-----------ccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc-hhhHH
Q 036633          404 LLLREWACEETKRRNNDS-KAV-I-----------VCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ-RPSAD  462 (550)
Q Consensus       404 ~~I~~~~l~~~~~~l~~~-~~~-~-----------l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~-~~la~  462 (550)
                      .+-+...-....+++... ++. +           ..+++++.+.|..... ...++  |...+++.- ..+|+
T Consensus       409 r~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~--R~~~rilrvArTiAd  480 (499)
T TIGR00368       409 KQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSS--RATHRILKVARTIAD  480 (499)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHh
Confidence            222222222222333221 010 1           2456777776665322 33455  988888875 44444

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=99.43  E-value=1.9e-12  Score=132.45  Aligned_cols=112  Identities=14%  Similarity=0.181  Sum_probs=76.0

Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhh
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSL  382 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~l  382 (550)
                      +|+|+||++-++.+.+..|-+++|..  -            --+|||+||.|...+....         -..-..++.+|
T Consensus       280 GVLFIDEvHmLDiEcFsfLnralEs~--~------------sPiiIlATNRg~~~irGt~---------~~sphGiP~Dl  336 (398)
T PF06068_consen  280 GVLFIDEVHMLDIECFSFLNRALESE--L------------SPIIILATNRGITKIRGTD---------IISPHGIPLDL  336 (398)
T ss_dssp             -EEEEESGGGSBHHHHHHHHHHHTST--T--------------EEEEEES-SEEE-BTTS----------EEETT--HHH
T ss_pred             ceEEecchhhccHHHHHHHHHHhcCC--C------------CcEEEEecCceeeeccCcc---------CcCCCCCCcch
Confidence            79999999999999999999999987  2            2469999999876553210         00012468899


Q ss_pred             hhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          383 LKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       383 l~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++|+ -+|...   |++.+++.+|+...+..       .+   +.+++++++.|.+-+.      -..|+.+++-
T Consensus       337 LDRl-lII~t~---py~~~ei~~Il~iR~~~-------E~---v~i~~~al~~L~~ig~------~~SLRYAiqL  391 (398)
T PF06068_consen  337 LDRL-LIIRTK---PYSEEEIKQILKIRAKE-------ED---VEISEDALDLLTKIGV------ETSLRYAIQL  391 (398)
T ss_dssp             HTTE-EEEEE-------HHHHHHHHHHHHHH-------CT-----B-HHHHHHHHHHHH------HS-HHHHHHC
T ss_pred             Hhhc-EEEECC---CCCHHHHHHHHHhhhhh-------hc---CcCCHHHHHHHHHHhh------hccHHHHHHh
Confidence            9999 899999   99999999999988854       54   4899999999997543      1345566654

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=2e-12  Score=131.36  Aligned_cols=191  Identities=19%  Similarity=0.236  Sum_probs=125.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchh---hhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA---AKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~---~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      ..|.|-.+|++-+-+++.....   =..|+   .+| ..+|++||||||||.||+++|..+..      .|+-+..|.+ 
T Consensus       212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi---rrPWkgvLm~GPPGTGKTlLAKAvATEc~t------TFFNVSsstl-  281 (491)
T KOG0738|consen  212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGI---RRPWKGVLMVGPPGTGKTLLAKAVATECGT------TFFNVSSSTL-  281 (491)
T ss_pred             HhhcchHHHHHHHHHHHhhhhhhHHHHhhc---ccccceeeeeCCCCCcHHHHHHHHHHhhcC------eEEEechhhh-
Confidence            4589999999988888865411   02333   478 89999999999999999999998865      6665554444 


Q ss_pred             chhhhhhHHh-------HHHHHHHhCCCCeEEeccccc------------cCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          282 ELESIKHFFD-------SLAALVKKRPYSVVLFDKIEK------------ANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       282 ~~~~~s~liG-------~lt~al~~~p~~VlllDEIek------------a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                          +|++-|       .|-+..+.+.-++|||||||.            ++..+-+-||..+|.-+        ...+-
T Consensus       282 ----tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~--------~t~e~  349 (491)
T KOG0738|consen  282 ----TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ--------GTLEN  349 (491)
T ss_pred             ----hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc--------ccccc
Confidence                455555       445555555559999999974            45578888888886431        11122


Q ss_pred             CC-eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          343 TN-TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       343 ~~-~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                      +. +.++++||++=                     -++.+|+.|+..-|..+   -.+.+....+++..|..        
T Consensus       350 ~k~VmVLAATN~PW---------------------diDEAlrRRlEKRIyIP---LP~~~~R~~Li~~~l~~--------  397 (491)
T KOG0738|consen  350 SKVVMVLAATNFPW---------------------DIDEALRRRLEKRIYIP---LPDAEARSALIKILLRS--------  397 (491)
T ss_pred             ceeEEEEeccCCCc---------------------chHHHHHHHHhhheeee---CCCHHHHHHHHHHhhcc--------
Confidence            22 55667778752                     35678899996666655   44667777777766632        


Q ss_pred             CCccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                          +..++++ ++.|++..-   |.+|-++.+++..
T Consensus       398 ----~~~~~~~~~~~lae~~e---GySGaDI~nvCre  427 (491)
T KOG0738|consen  398 ----VELDDPVNLEDLAERSE---GYSGADITNVCRE  427 (491)
T ss_pred             ----ccCCCCccHHHHHHHhc---CCChHHHHHHHHH
Confidence                2333333 566665322   2233677777766

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.41  E-value=2.9e-12  Score=132.40  Aligned_cols=143  Identities=23%  Similarity=0.329  Sum_probs=107.7

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------C
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------N  268 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------~  268 (550)
                      .++|+++++..+.......         .+.|..+||+||||+|||++|.++|+.+++.+.                  .
T Consensus         2 ~~~~~~~~~~~l~~~~~~~---------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~   72 (325)
T COG0470           2 ELVPWQEAVKRLLVQALES---------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGN   72 (325)
T ss_pred             CcccchhHHHHHHHHHHhc---------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcC
Confidence            5788999998888888755         123457999999999999999999999996220                  1


Q ss_pred             CCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633          269 DNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTN  344 (550)
Q Consensus       269 ~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~  344 (550)
                      ...++.++-+......-.-..+..+.+....    .++.||++||+|.++++.++.|+..+++.  .           .+
T Consensus        73 ~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep--~-----------~~  139 (325)
T COG0470          73 HPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP--P-----------KN  139 (325)
T ss_pred             CCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC--C-----------CC
Confidence            2467777776655432122223344443333    35679999999999999999999999988  6           78


Q ss_pred             eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633          345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~  393 (550)
                      +.||++||..                     ..+.|.+.+|| .++.|.
T Consensus       140 ~~~il~~n~~---------------------~~il~tI~SRc-~~i~f~  166 (325)
T COG0470         140 TRFILITNDP---------------------SKILPTIRSRC-QRIRFK  166 (325)
T ss_pred             eEEEEEcCCh---------------------hhccchhhhcc-eeeecC
Confidence            8999999943                     34556799999 899999

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.41  E-value=3.7e-12  Score=138.06  Aligned_cols=169  Identities=18%  Similarity=0.206  Sum_probs=117.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHH----hHHHHHHHhCCCCeEEeccccccC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFF----DSLAALVKKRPYSVVLFDKIEKAN  314 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~li----G~lt~al~~~p~~VlllDEIeka~  314 (550)
                      .+++|+||||+|||+|++++++.+...+ ....++.+++.++..... ..+.    ..+.+.++  ...+|+||||+...
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~  224 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSEKFTNDFV-NALRNNTMEEFKEKYR--SVDVLLIDDIQFLA  224 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHHHHHH-HHHHcCcHHHHHHHHh--cCCEEEEehhhhhc
Confidence            6799999999999999999999986510 134577888877642211 1110    13333333  34699999999764


Q ss_pred             --HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--cee
Q 036633          315 --SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLV  390 (550)
Q Consensus       315 --~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii  390 (550)
                        +..+..|+.+++.-  .  ..        +..+|+|||.....+                 ..+.|.+.+|+.  .++
T Consensus       225 ~~~~~~~~l~~~~n~l--~--~~--------~~~iiits~~~p~~l-----------------~~l~~~l~SRl~~gl~v  275 (450)
T PRK00149        225 GKERTQEEFFHTFNAL--H--EA--------GKQIVLTSDRPPKEL-----------------PGLEERLRSRFEWGLTV  275 (450)
T ss_pred             CCHHHHHHHHHHHHHH--H--HC--------CCcEEEECCCCHHHH-----------------HHHHHHHHhHhcCCeeE
Confidence              34566777766533  1  11        112677888765443                 236678999995  378


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          391 VIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       391 ~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .|.   |++.+++..|+...+..       .++   .++++++++|+.+.-   | |+|.|..++.+
T Consensus       276 ~i~---~pd~~~r~~il~~~~~~-------~~~---~l~~e~l~~ia~~~~---~-~~R~l~~~l~~  325 (450)
T PRK00149        276 DIE---PPDLETRIAILKKKAEE-------EGI---DLPDEVLEFIAKNIT---S-NVRELEGALNR  325 (450)
T ss_pred             Eec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHcCcC---C-CHHHHHHHHHH
Confidence            999   99999999999987753       344   899999999998643   5 78999888876

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.40  E-value=3.8e-12  Score=124.67  Aligned_cols=196  Identities=16%  Similarity=0.187  Sum_probs=122.3

Q ss_pred             hcCcccCcH-HHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          204 LKKRVFGQN-DAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       204 L~~~viGQ~-~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +...|+|.. +..-..+..+...         +... .+++++||+|+|||.|.+++++.+.... ....++.+++.+|.
T Consensus         7 Fdnfv~g~~N~~a~~~~~~ia~~---------~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~~~~f~   76 (219)
T PF00308_consen    7 FDNFVVGESNELAYAAAKAIAEN---------PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLSAEEFI   76 (219)
T ss_dssp             CCCS--TTTTHHHHHHHHHHHHS---------TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEEHHHHH
T ss_pred             cccCCcCCcHHHHHHHHHHHHhc---------CCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeecHHHHH
Confidence            456677852 2223334444332         2223 5789999999999999999998875311 24467888877765


Q ss_pred             chhhhhhHHh---HHHHHHHhCCCCeEEeccccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChH
Q 036633          282 ELESIKHFFD---SLAALVKKRPYSVVLFDKIEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDE  356 (550)
Q Consensus       282 ~~~~~s~liG---~lt~al~~~p~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~  356 (550)
                      .....+.--+   .+.+.+  ....+|+||+++....  ..+..|+.+++.-  .   .       ++..+|+||+..+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~--~---~-------~~k~li~ts~~~P~  142 (219)
T PF00308_consen   77 REFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGKQRTQEELFHLFNRL--I---E-------SGKQLILTSDRPPS  142 (219)
T ss_dssp             HHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTHHHHHHHHHHHHHHH--H---H-------TTSEEEEEESS-TT
T ss_pred             HHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCchHHHHHHHHHHHHH--H---h-------hCCeEEEEeCCCCc
Confidence            3322111001   222222  3567999999998864  4588888888643  2   1       12236788876543


Q ss_pred             HHHHhhhhhhHhhHHHHhccCCChhhhhhccc--eeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHH
Q 036633          357 QVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK--LVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALV  434 (550)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~--ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~  434 (550)
                      .+                 ..+.|.+.+|+..  ++.+.   |++.++...|+......       +|+   .+++++++
T Consensus       143 ~l-----------------~~~~~~L~SRl~~Gl~~~l~---~pd~~~r~~il~~~a~~-------~~~---~l~~~v~~  192 (219)
T PF00308_consen  143 EL-----------------SGLLPDLRSRLSWGLVVELQ---PPDDEDRRRILQKKAKE-------RGI---ELPEEVIE  192 (219)
T ss_dssp             TT-----------------TTS-HHHHHHHHCSEEEEE-------HHHHHHHHHHHHHH-------TT-----S-HHHHH
T ss_pred             cc-----------------cccChhhhhhHhhcchhhcC---CCCHHHHHHHHHHHHHH-------hCC---CCcHHHHH
Confidence            32                 3578999999976  66667   89999999999887754       665   79999999


Q ss_pred             HHHhcCcccCCCcccHHHHHHcc
Q 036633          435 HIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       435 ~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +|+...-   + |+|.|..++++
T Consensus       193 ~l~~~~~---~-~~r~L~~~l~~  211 (219)
T PF00308_consen  193 YLARRFR---R-DVRELEGALNR  211 (219)
T ss_dssp             HHHHHTT---S-SHHHHHHHHHH
T ss_pred             HHHHhhc---C-CHHHHHHHHHH
Confidence            9998532   3 77999999886

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.40  E-value=6.9e-12  Score=135.11  Aligned_cols=197  Identities=16%  Similarity=0.184  Sum_probs=125.6

Q ss_pred             hhcCcccCcHHHHH-HHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          203 RLKKRVFGQNDAID-VIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       203 ~L~~~viGQ~~ai~-~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      .+...|+|...... ..+..+..         .|..+.+++|+||||+|||+|++++++.+.... ....++.++++++.
T Consensus       103 tFdnFv~g~~n~~a~~~~~~~~~---------~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~~~v~yi~~~~f~  172 (440)
T PRK14088        103 TFENFVVGPGNSFAYHAALEVAK---------NPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKFL  172 (440)
T ss_pred             cccccccCCchHHHHHHHHHHHh---------CcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHH
Confidence            45667888665432 11111211         122235799999999999999999999875411 13367777876653


Q ss_pred             chhhhhhHH-h---HHHHHHHhCCCCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCCh
Q 036633          282 ELESIKHFF-D---SLAALVKKRPYSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD  355 (550)
Q Consensus       282 ~~~~~s~li-G---~lt~al~~~p~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~  355 (550)
                      ..... .+. +   .+.+..+. ...+|+|||++...  ...+..|+.++..-  .   +       .+..+|+|||...
T Consensus       173 ~~~~~-~~~~~~~~~f~~~~~~-~~dvLlIDDi~~l~~~~~~q~elf~~~n~l--~---~-------~~k~iIitsd~~p  238 (440)
T PRK14088        173 NDLVD-SMKEGKLNEFREKYRK-KVDVLLIDDVQFLIGKTGVQTELFHTFNEL--H---D-------SGKQIVICSDREP  238 (440)
T ss_pred             HHHHH-HHhcccHHHHHHHHHh-cCCEEEEechhhhcCcHHHHHHHHHHHHHH--H---H-------cCCeEEEECCCCH
Confidence            22111 110 1   23333332 34799999999763  34566666666432  1   1       1123777887655


Q ss_pred             HHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633          356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL  433 (550)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~  433 (550)
                      ..+                 ..+.+.+.+|+.  .++.+.   |++.++...|+...+..       .++   .++++++
T Consensus       239 ~~l-----------------~~l~~rL~SR~~~gl~v~i~---~pd~e~r~~IL~~~~~~-------~~~---~l~~ev~  288 (440)
T PRK14088        239 QKL-----------------SEFQDRLVSRFQMGLVAKLE---PPDEETRKKIARKMLEI-------EHG---ELPEEVL  288 (440)
T ss_pred             HHH-----------------HHHHHHHhhHHhcCceEeeC---CCCHHHHHHHHHHHHHh-------cCC---CCCHHHH
Confidence            443                 235567888883  378888   99999999998877642       444   7899999


Q ss_pred             HHHHhcCcccCCCcccHHHHHHcc
Q 036633          434 VHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       434 ~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++|+.+.-   | |+|.|..++.+
T Consensus       289 ~~Ia~~~~---~-~~R~L~g~l~~  308 (440)
T PRK14088        289 NFVAENVD---D-NLRRLRGAIIK  308 (440)
T ss_pred             HHHHhccc---c-CHHHHHHHHHH
Confidence            99998643   5 88999999987

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.40  E-value=2.4e-12  Score=133.73  Aligned_cols=152  Identities=18%  Similarity=0.240  Sum_probs=106.9

Q ss_pred             CcccC-cHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CC---------------
Q 036633          206 KRVFG-QNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DN---------------  268 (550)
Q Consensus       206 ~~viG-Q~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~---------------  268 (550)
                      ..|+| |+.+++.+...+...   +       -|..+||+||+|+|||++|+.+|+.+.... ..               
T Consensus         5 ~~i~~~q~~~~~~L~~~~~~~---~-------l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~   74 (329)
T PRK08058          5 EQLTALQPVVVKMLQNSIAKN---R-------LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDS   74 (329)
T ss_pred             HHHHhhHHHHHHHHHHHHHcC---C-------CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhc
Confidence            45777 999999998888765   1       337899999999999999999999997621 00               


Q ss_pred             --CCceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          269 --DNHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       269 --~~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                        ...+..+....  ..-.+... -.+.+.+..    .++.|++|||+|+++.+.+|.||+.||+.  .           
T Consensus        75 ~~hpD~~~i~~~~--~~i~id~i-r~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP--p-----------  138 (329)
T PRK08058         75 GNHPDVHLVAPDG--QSIKKDQI-RYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP--S-----------  138 (329)
T ss_pred             CCCCCEEEecccc--ccCCHHHH-HHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC--C-----------
Confidence              11122221100  00001000 033333333    34569999999999999999999999987  5           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE  408 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~  408 (550)
                      .+++||++|+..                     ..+.|.+.+|+ .++.|.   |++.+++..++.
T Consensus       139 ~~~~~Il~t~~~---------------------~~ll~TIrSRc-~~i~~~---~~~~~~~~~~L~  179 (329)
T PRK08058        139 GGTTAILLTENK---------------------HQILPTILSRC-QVVEFR---PLPPESLIQRLQ  179 (329)
T ss_pred             CCceEEEEeCCh---------------------HhCcHHHHhhc-eeeeCC---CCCHHHHHHHHH
Confidence            677788887742                     35667899999 899999   999998866654

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=8.2e-12  Score=120.20  Aligned_cols=188  Identities=21%  Similarity=0.340  Sum_probs=126.4

Q ss_pred             ccCcHHHHHHHHHHHhcc-----hhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633          208 VFGQNDAIDVIFEALTKP-----KAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE  282 (550)
Q Consensus       208 viGQ~~ai~~i~~~l~~~-----~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~  282 (550)
                      |=|-+.-++.|.+.+...     ++...|+.   +|..+||+||||||||.+|+++|.+...      .||++..|++  
T Consensus       149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIa---QPKGvlLygppgtGktLlaraVahht~c------~firvsgsel--  217 (404)
T KOG0728|consen  149 IGGLDKQIKEIKEVIELPVKHPELFEALGIA---QPKGVLLYGPPGTGKTLLARAVAHHTDC------TFIRVSGSEL--  217 (404)
T ss_pred             hccHHHHHHHHHHHHhccccCHHHHHhcCCC---CCcceEEecCCCCchhHHHHHHHhhcce------EEEEechHHH--
Confidence            445566666666666443     01123443   5567899999999999999999988655      9999998876  


Q ss_pred             hhhhhhHHh-------HHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhh--hccccccccCCeEeec
Q 036633          283 LESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILK--TDFNRKATRGIAAFDL  342 (550)
Q Consensus       283 ~~~~s~liG-------~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld--~g~~~~l~d~g~~vd~  342 (550)
                         +.++||       .|.-..|.+..++||.|||+..           +.++|...|.++.  +|    +.      ..
T Consensus       218 ---vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg----fe------at  284 (404)
T KOG0728|consen  218 ---VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG----FE------AT  284 (404)
T ss_pred             ---HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc----cc------cc
Confidence               667777       2222234444499999999865           4578888888874  23    11      12


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                      +|.-+||+||.-                     ..++|+++  +|||.-|.|+   |.+.+....|++.+-.+.+=   .
T Consensus       285 knikvimatnri---------------------dild~allrpgridrkiefp---~p~e~ar~~ilkihsrkmnl---~  337 (404)
T KOG0728|consen  285 KNIKVIMATNRI---------------------DILDPALLRPGRIDRKIEFP---PPNEEARLDILKIHSRKMNL---T  337 (404)
T ss_pred             cceEEEEecccc---------------------ccccHhhcCCCcccccccCC---CCCHHHHHHHHHHhhhhhch---h
Confidence            566689999962                     46778887  8999999999   88988888887655433111   1


Q ss_pred             CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +|+        -++.+++.-.   |++|-+++.++..
T Consensus       338 rgi--------~l~kiaekm~---gasgaevk~vcte  363 (404)
T KOG0728|consen  338 RGI--------NLRKIAEKMP---GASGAEVKGVCTE  363 (404)
T ss_pred             ccc--------CHHHHHHhCC---CCccchhhhhhhh
Confidence            344        2355666432   4444567666654

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.38  E-value=1.5e-12  Score=127.76  Aligned_cols=220  Identities=17%  Similarity=0.191  Sum_probs=156.4

Q ss_pred             hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      .|+..|.-...+....++++.+.   .  +    +. .++|+.||+|.||+.+|+.|.+.-..+-.-+.+|+.+||..+.
T Consensus       181 ~lksgiatrnp~fnrmieqierv---a--~----rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlr  251 (531)
T COG4650         181 FLKSGIATRNPHFNRMIEQIERV---A--I----RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLR  251 (531)
T ss_pred             HHHhcccccChHHHHHHHHHHHH---H--h----hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeec
Confidence            35666777777777777777765   1  1    22 6899999999999999999865432111134499999999999


Q ss_pred             chhhhhhHHh----HHHH-------HHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEe--ecCCeEE
Q 036633          282 ELESIKHFFD----SLAA-------LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAF--DLTNTLI  347 (550)
Q Consensus       282 ~~~~~s~liG----~lt~-------al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~v--d~~~~ii  347 (550)
                      .....|.|+|    .+|+       .++...++.+|||||..+..+-|..||+.+++.  +++..+ .+.+  ||.   +
T Consensus       252 gd~amsalfghvkgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaieek--rf~pfgsdr~v~sdfq---l  326 (531)
T COG4650         252 GDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEK--RFYPFGSDRQVSSDFQ---L  326 (531)
T ss_pred             CchHHHHHHhhhccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhh--ccCCCCCccccccchH---H
Confidence            9999999999    4443       345567789999999999999999999999998  756655 4433  444   3


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                      |..|-.+              .-.-.-+..|+.+++.|| +...|.+| .|.  .++|+.-++..|.+....   .|- .
T Consensus       327 iagtvrd--------------lrq~vaeg~fredl~ari-nlwtf~lp-gl~qr~ediepnldyelerha~~---~g~-~  386 (531)
T COG4650         327 IAGTVRD--------------LRQLVAEGKFREDLYARI-NLWTFTLP-GLRQRQEDIEPNLDYELERHASL---TGD-S  386 (531)
T ss_pred             hhhhHHH--------------HHHHHhccchHHHHHHhh-heeeeecc-ccccCccccCCCccHHHHHHHHh---hCc-e
Confidence            3322221              112233578999999999 68888844 553  488888888888765543   566 7


Q ss_pred             ccCCHHHHH-HHHhcCc---ccCCCcccHHHHHHcc
Q 036633          426 VCPSTSALV-HIASNAA---RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       426 l~~~~~a~~-~L~~~~~---~~~GaN~R~L~~~i~~  457 (550)
                      +.|..++.. ||+-.+.   ...| |-|+|...+.+
T Consensus       387 vrfntearra~l~fa~spqa~w~g-nfrelsasvtr  421 (531)
T COG4650         387 VRFNTEARRAWLAFATSPQATWRG-NFRELSASVTR  421 (531)
T ss_pred             eeeehHHHHHHHHhccCcchhhcc-cHHHHhHHHHH
Confidence            888888854 4442221   3356 88999888876

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.38  E-value=1.1e-11  Score=111.11  Aligned_cols=145  Identities=29%  Similarity=0.387  Sum_probs=103.3

Q ss_pred             cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhh
Q 036633          209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH  288 (550)
Q Consensus       209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~  288 (550)
                      +|++..+..+...+...           .+.+++++||||||||++++.+++.+..   ...+++.++++.+........
T Consensus         1 ~~~~~~~~~i~~~~~~~-----------~~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~   66 (151)
T cd00009           1 VGQEEAIEALREALELP-----------PPKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEGLVVAE   66 (151)
T ss_pred             CchHHHHHHHHHHHhCC-----------CCCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhhhHHHH
Confidence            47788888877777643           2268999999999999999999999865   556899999988765544433


Q ss_pred             HHhH-----HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhh
Q 036633          289 FFDS-----LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVML  363 (550)
Q Consensus       289 liG~-----lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~  363 (550)
                      ..+.     ..........++|++||++.+.+.....+++.++..  . ..    .....++.+|+++|....       
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~--~-~~----~~~~~~~~ii~~~~~~~~-------  132 (151)
T cd00009          67 LFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETL--N-DL----RIDRENVRVIGATNRPLL-------  132 (151)
T ss_pred             HhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhc--C-ce----eccCCCeEEEEecCcccc-------
Confidence            3321     111122234589999999999888888999988876  3 10    012356778898886421       


Q ss_pred             hhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633          364 TATYGRVNEVTGSLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       364 ~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~  393 (550)
                                  ..+.+.+.+|++..+.|.
T Consensus       133 ------------~~~~~~~~~r~~~~i~~~  150 (151)
T cd00009         133 ------------GDLDRALYDRLDIRIVIP  150 (151)
T ss_pred             ------------CCcChhHHhhhccEeecC
Confidence                        256788999998777765

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=99.38  E-value=1.4e-12  Score=115.02  Aligned_cols=102  Identities=21%  Similarity=0.252  Sum_probs=67.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-----HHHHH--HHhCC--CCeEEeccc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-----SLAAL--VKKRP--YSVVLFDKI  310 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-----~lt~a--l~~~p--~~VlllDEI  310 (550)
                      ++|+.|+||+|||++|+++|+.+..      .|.|+.+..-   ..-+.++|     .-...  ++..|  ..|+|+|||
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~------~f~RIq~tpd---llPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEi   71 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGL------SFKRIQFTPD---LLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEI   71 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--------EEEEE--TT-----HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETG
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCC------ceeEEEecCC---CCcccceeeeeeccCCCeeEeecChhhhceeeeccc
Confidence            4799999999999999999999988      8999987521   23455566     00000  01111  269999999


Q ss_pred             cccCHHHHHHHHHhhhhccccccccCCeEeecCC-eEEEEeCCC
Q 036633          311 EKANSSILNLLLKILKTDFNRKATRGIAAFDLTN-TLIIMTSDL  353 (550)
Q Consensus       311 eka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~-~iiI~TsN~  353 (550)
                      ..++|.+|+.||++++++  + ++..|..+.+.+ .+||+|-|.
T Consensus        72 NrappktQsAlLeam~Er--~-Vt~~g~~~~lp~pf~ViATqNp  112 (131)
T PF07726_consen   72 NRAPPKTQSALLEAMEER--Q-VTIDGQTYPLPDPFFVIATQNP  112 (131)
T ss_dssp             GGS-HHHHHHHHHHHHHS--E-EEETTEEEE--SS-EEEEEE-T
T ss_pred             ccCCHHHHHHHHHHHHcC--e-EEeCCEEEECCCcEEEEEecCc
Confidence            999999999999999999  7 877788888877 556667785

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.37  E-value=1.5e-11  Score=132.78  Aligned_cols=202  Identities=13%  Similarity=0.159  Sum_probs=133.7

Q ss_pred             hhhcCcccCcHHHH-HHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          202 GRLKKRVFGQNDAI-DVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       202 ~~L~~~viGQ~~ai-~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      ..+...++|-.... -..+..+..         .|..+ .+++|+||+|+|||+|++++++.+.... ....++.+++.+
T Consensus       112 ~tFdnFv~g~~n~~A~~aa~~~a~---------~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~~~~v~yv~~~~  181 (450)
T PRK14087        112 NTFENFVIGSSNEQAFIAVQTVSK---------NPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-SDLKVSYMSGDE  181 (450)
T ss_pred             cchhcccCCCcHHHHHHHHHHHHh---------CcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHH
Confidence            45677788875532 111222211         23334 6799999999999999999999775310 234667777766


Q ss_pred             CCchhhhh--hHHhHHHHHHHh-CCCCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCC
Q 036633          280 YTELESIK--HFFDSLAALVKK-RPYSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLK  354 (550)
Q Consensus       280 ~~~~~~~s--~liG~lt~al~~-~p~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g  354 (550)
                      +......+  ...+.+.+.... +...+|+||||+...  +..++.|+.++..-  .   +.       +..+|+|||..
T Consensus       182 f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~--~---~~-------~k~iIltsd~~  249 (450)
T PRK14087        182 FARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNF--I---EN-------DKQLFFSSDKS  249 (450)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHH--H---Hc-------CCcEEEECCCC
Confidence            54322111  000112122111 234699999999876  67788888887643  2   11       12378999976


Q ss_pred             hHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc--eeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633          355 DEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK--LVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSA  432 (550)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~--ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a  432 (550)
                      ...+                 ..+.+.+.+|+..  ++.+.   |++.+++..|+.+.+..       .|+ .+.+++++
T Consensus       250 P~~l-----------------~~l~~rL~SR~~~Gl~~~L~---~pd~e~r~~iL~~~~~~-------~gl-~~~l~~ev  301 (450)
T PRK14087        250 PELL-----------------NGFDNRLITRFNMGLSIAIQ---KLDNKTATAIIKKEIKN-------QNI-KQEVTEEA  301 (450)
T ss_pred             HHHH-----------------hhccHHHHHHHhCCceeccC---CcCHHHHHHHHHHHHHh-------cCC-CCCCCHHH
Confidence            5443                 4677889999953  67777   99999999999998854       354 55799999


Q ss_pred             HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          433 LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       433 ~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +++|+..+-   | |+|.|..++.+
T Consensus       302 l~~Ia~~~~---g-d~R~L~gaL~~  322 (450)
T PRK14087        302 INFISNYYS---D-DVRKIKGSVSR  322 (450)
T ss_pred             HHHHHHccC---C-CHHHHHHHHHH
Confidence            999998653   6 88999999986

>smart00763 AAA_PrkA PrkA AAA domain

Probab=99.37  E-value=9.1e-12  Score=128.58  Aligned_cols=203  Identities=17%  Similarity=0.220  Sum_probs=132.1

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccC-CCCCCceeEEec----CC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDN-NDNDNHLIHFDM----GN  279 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~-~~~~~~li~id~----s~  279 (550)
                      ...|+|+++++.+++..++..   ..|+..  +...++|+||||+|||++|++|++.+..- ...+.++..+..    |.
T Consensus        50 ~~~~~G~~~~i~~lv~~l~~~---a~g~~~--~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp  124 (361)
T smart00763       50 DHDFFGMEEAIERFVNYFKSA---AQGLEE--RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP  124 (361)
T ss_pred             chhccCcHHHHHHHHHHHHHH---HhcCCC--CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence            447999999999999999987   555532  23689999999999999999999998552 224556766655    32


Q ss_pred             CCchh------------------------------hhhhH---H-h----------------------------------
Q 036633          280 YTELE------------------------------SIKHF---F-D----------------------------------  291 (550)
Q Consensus       280 ~~~~~------------------------------~~s~l---i-G----------------------------------  291 (550)
                      +.+..                              ....+   . |                                  
T Consensus       125 ~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~  204 (361)
T smart00763      125 MHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDIS  204 (361)
T ss_pred             CccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHH
Confidence            22110                              00011   0 1                                  


Q ss_pred             HHHH----------------------HHHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-C-CeEeecCCeEE
Q 036633          292 SLAA----------------------LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-G-IAAFDLTNTLI  347 (550)
Q Consensus       292 ~lt~----------------------al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~-g~~vd~~~~ii  347 (550)
                      .|++                      .+.+...|++-|+|+.|++.++++.||.++++|  . +.. + +..+.+. .+|
T Consensus       205 ~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~--~-v~~~~~~~~~~~d-~li  280 (361)
T smart00763      205 ELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEG--N-IKGTGGFAMIPID-GLI  280 (361)
T ss_pred             HHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcc--e-EecCCcccccccc-eEE
Confidence            2222                      122222379999999999999999999999999  6 543 3 3344444 488


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVC  427 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~  427 (550)
                      |+|||...              ..........++|+.||. +|.+.  -+++-++=.+|.++.+..      ..-. ...
T Consensus       281 ia~sNe~e--------------~~~~~~~k~~eaf~dR~~-~i~vp--Y~l~~~~E~~Iy~k~~~~------s~~~-~~~  336 (361)
T smart00763      281 IAHSNESE--------------WQRFKSNKKNEALLDRII-KVKVP--YCLRVSEEAQIYEKLLRN------SDLT-EAH  336 (361)
T ss_pred             EEeCCHHH--------------HhhhhccccchhhhhceE-EEeCC--CcCCHHHHHHHHHHHhcc------CcCc-ccc
Confidence            99999521              111112234688999995 55543  145667777777776642      1112 457


Q ss_pred             CCHHHHHHHHhcC
Q 036633          428 PSTSALVHIASNA  440 (550)
Q Consensus       428 ~~~~a~~~L~~~~  440 (550)
                      +.|.+++.++..+
T Consensus       337 ~aP~~le~aa~~a  349 (361)
T smart00763      337 IAPHTLEMAALFS  349 (361)
T ss_pred             cCchHHHHHHHHH
Confidence            7888888777643

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK04132 replication factor C small subunit; Provisional

Probab=99.36  E-value=6.5e-12  Score=142.63  Aligned_cols=166  Identities=14%  Similarity=0.195  Sum_probs=124.6

Q ss_pred             eeEEEec--cCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHH--HHhCCCCeEEeccccccC
Q 036633          239 GLFLFAG--PNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAAL--VKKRPYSVVLFDKIEKAN  314 (550)
Q Consensus       239 ~~lLf~G--p~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~a--l~~~p~~VlllDEIeka~  314 (550)
                      -.-+..|  |+|.|||++|.+||+.+|+.+ ...+++.+|.|+......+...+..+...  +...++.|++|||+|.++
T Consensus       565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~-~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt  643 (846)
T PRK04132        565 YHNFIGGNLPTVLHNTTAALALARELFGEN-WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT  643 (846)
T ss_pred             hhhhhcCCCCCcccHHHHHHHHHHhhhccc-ccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC
Confidence            3445678  999999999999999998721 24579999999876555555444432211  111235699999999999


Q ss_pred             HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecC
Q 036633          315 SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDL  394 (550)
Q Consensus       315 ~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~  394 (550)
                      ++.|+.|++.+++.  .           .++.||++||..                     ..+.|.+.||| .++.|. 
T Consensus       644 ~~AQnALLk~lEep--~-----------~~~~FILi~N~~---------------------~kIi~tIrSRC-~~i~F~-  687 (846)
T PRK04132        644 QDAQQALRRTMEMF--S-----------SNVRFILSCNYS---------------------SKIIEPIQSRC-AIFRFR-  687 (846)
T ss_pred             HHHHHHHHHHhhCC--C-----------CCeEEEEEeCCh---------------------hhCchHHhhhc-eEEeCC-
Confidence            99999999999976  4           567799999864                     24557799999 899999 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          395 AVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       395 ~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        |++.+++...+...+.+       .|+   .++++++..|+..+.   | +.|..-+.++.
T Consensus       688 --~ls~~~i~~~L~~I~~~-------Egi---~i~~e~L~~Ia~~s~---G-DlR~AIn~Lq~  734 (846)
T PRK04132        688 --PLRDEDIAKRLRYIAEN-------EGL---ELTEEGLQAILYIAE---G-DMRRAINILQA  734 (846)
T ss_pred             --CCCHHHHHHHHHHHHHh-------cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence              99999999888776642       445   689999999998654   5 55655555553

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.36  E-value=8.1e-12  Score=127.63  Aligned_cols=147  Identities=9%  Similarity=0.091  Sum_probs=103.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------------HHHHHHHhC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------------SLAALVKKR  300 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------------~lt~al~~~  300 (550)
                      .+++|.||||||||++|+.+|+.+..      ++++++|+.-....   .++|                  .|+.+.+. 
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~------~~~rV~~~~~l~~~---DliG~~~~~l~~g~~~~~f~~GpL~~A~~~-  134 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNW------PCVRVNLDSHVSRI---DLVGKDAIVLKDGKQITEFRDGILPWALQH-  134 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCC------CeEEEEecCCCChh---hcCCCceeeccCCcceeEEecCcchhHHhC-
Confidence            47999999999999999999999988      99999998765442   2344                  23333332 


Q ss_pred             CCCeEEeccccccCHHHHHHHHHhhhh-ccccccccCCeEeecC-CeEEEEeCCCCh-HHHHHhhhhhhHhhHHHHhccC
Q 036633          301 PYSVVLFDKIEKANSSILNLLLKILKT-DFNRKATRGIAAFDLT-NTLIIMTSDLKD-EQVYEVMLTATYGRVNEVTGSL  377 (550)
Q Consensus       301 p~~VlllDEIeka~~~v~~~Ll~~ld~-g~~~~l~d~g~~vd~~-~~iiI~TsN~g~-~~~~~~~~~~~~~~~~~~l~~~  377 (550)
                       +.+++||||+.++|++++.|..+||. |++. +.+.++.+.-. +..+|+|.|.-. ..-...     |..     ...
T Consensus       135 -g~illlDEin~a~p~~~~~L~~lLE~~~~l~-i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~-----y~G-----t~~  202 (327)
T TIGR01650       135 -NVALCFDEYDAGRPDVMFVIQRVLEAGGKLT-LLDQNRVIRAHPAFRLFATANTIGLGDTTGL-----YHG-----TQQ  202 (327)
T ss_pred             -CeEEEechhhccCHHHHHHHHHHhccCCeEE-ECCCceEecCCCCeEEEEeeCCCCcCCCCcc-----eee-----eec
Confidence             35799999999999999999999994 5222 22226777444 566999999621 000000     000     134


Q ss_pred             CChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633          378 FKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA  410 (550)
Q Consensus       378 f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~  410 (550)
                      +++++++|+-.++.+.   -++.++-..|+...
T Consensus       203 l~~A~lDRF~i~~~~~---Yp~~e~E~~Il~~~  232 (327)
T TIGR01650       203 INQAQMDRWSIVTTLN---YLEHDNEAAIVLAK  232 (327)
T ss_pred             CCHHHHhheeeEeeCC---CCCHHHHHHHHHhh
Confidence            5899999994455788   78888888877654

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=99.36  E-value=2.9e-12  Score=112.67  Aligned_cols=108  Identities=19%  Similarity=0.349  Sum_probs=83.1

Q ss_pred             HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE
Q 036633          195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH  274 (550)
Q Consensus       195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~  274 (550)
                      .++..|+..|.++++||.-|.+.|.+++...   ... ..|++|.++.|+||||||||.+++.||+.+|..| ..++++.
T Consensus        14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~---l~~-~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G-~~S~~V~   88 (127)
T PF06309_consen   14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGH---LAN-PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG-MKSPFVH   88 (127)
T ss_pred             CCHHHHHHHHHHHccCcHHHHHHHHHHHHHH---HcC-CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcc-cCCCcee
Confidence            3477899999999999999999999999987   333 4788999999999999999999999999999855 3445665


Q ss_pred             EecCC--CCchhhh----hhHHhHHHHHHHhCCCCeEEe
Q 036633          275 FDMGN--YTELESI----KHFFDSLAALVKKRPYSVVLF  307 (550)
Q Consensus       275 id~s~--~~~~~~~----s~liG~lt~al~~~p~~Vlll  307 (550)
                      .=.+.  |+....+    ..|-..+.+.+.++|.++++|
T Consensus        89 ~f~~~~hFP~~~~v~~Yk~~L~~~I~~~v~~C~rslFIF  127 (127)
T PF06309_consen   89 QFIATHHFPHNSNVDEYKEQLKSWIRGNVSRCPRSLFIF  127 (127)
T ss_pred             eecccccCCCchHHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence            43333  3222222    223337778888999988775

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.36  E-value=1.2e-11  Score=132.95  Aligned_cols=199  Identities=14%  Similarity=0.199  Sum_probs=129.2

Q ss_pred             hhcCcccCcHHHHH-HHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          203 RLKKRVFGQNDAID-VIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       203 ~L~~~viGQ~~ai~-~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .+...|+|...... ..+..+...   . + ..+..+ .+++|+||+|+|||+|+++++..+..   ....++.+++..+
T Consensus       109 tFdnFv~g~~N~~a~~~a~~~a~~---~-~-~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~~~~f  180 (445)
T PRK12422        109 TFANFLVTPENDLPHRILQEFTKV---S-E-QGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVRSELF  180 (445)
T ss_pred             cccceeeCCcHHHHHHHHHHHHhc---c-c-cccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEeeHHHH
Confidence            46677888765542 333333322   0 0 012234 67999999999999999999998865   4456777776555


Q ss_pred             CchhhhhhHH-hHHHHHHH--hCCCCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCCh
Q 036633          281 TELESIKHFF-DSLAALVK--KRPYSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD  355 (550)
Q Consensus       281 ~~~~~~s~li-G~lt~al~--~~p~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~  355 (550)
                      .... .+.+- |.. +.++  -....||+||||+...  +..+..|+.++..-  .   +       .+..+|+|||...
T Consensus       181 ~~~~-~~~l~~~~~-~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l--~---~-------~~k~IIlts~~~p  246 (445)
T PRK12422        181 TEHL-VSAIRSGEM-QRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSL--H---T-------EGKLIVISSTCAP  246 (445)
T ss_pred             HHHH-HHHHhcchH-HHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHH--H---H-------CCCcEEEecCCCH
Confidence            3211 11111 111 1111  1234699999999875  35677777776422  1   1       1123788888755


Q ss_pred             HHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633          356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL  433 (550)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~  433 (550)
                      ..+                 ..+.+.+.+|+.  .++.+.   |++.+++..|+...+..       .|+   .++++++
T Consensus       247 ~~l-----------------~~l~~rL~SR~~~Gl~~~l~---~pd~e~r~~iL~~k~~~-------~~~---~l~~evl  296 (445)
T PRK12422        247 QDL-----------------KAMEERLISRFEWGIAIPLH---PLTKEGLRSFLERKAEA-------LSI---RIEETAL  296 (445)
T ss_pred             HHH-----------------hhhHHHHHhhhcCCeEEecC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHH
Confidence            443                 246788999995  577788   89999999999887743       444   8899999


Q ss_pred             HHHHhcCcccCCCcccHHHHHHcc
Q 036633          434 VHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       434 ~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++|+...-   | |+|.|...+++
T Consensus       297 ~~la~~~~---~-dir~L~g~l~~  316 (445)
T PRK12422        297 DFLIEALS---S-NVKSLLHALTL  316 (445)
T ss_pred             HHHHHhcC---C-CHHHHHHHHHH
Confidence            99998532   4 78999998886

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.6e-12  Score=136.37  Aligned_cols=213  Identities=15%  Similarity=0.080  Sum_probs=123.5

Q ss_pred             CCccCHHHHHHHHHHHhCC-CCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEe
Q 036633          166 KLAVDVEEIAEVASKLTGI-PASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFA  244 (550)
Q Consensus       166 ~~~v~~~~i~~v~~~~~gi-p~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~  244 (550)
                      -.......+.+++....|. +...-...+...-......| ++|+||+.|+..+..+..-.             .++||+
T Consensus       139 ~~v~~~~~l~ev~~~l~g~~~l~~~~~~~~~~~~~~~~D~-~DV~GQ~~AKrAleiAAAGg-------------HnLl~~  204 (490)
T COG0606         139 LPVYGARYLEEVVNFLEGKLRLPIPIPSEVIESFSLAPDF-KDVKGQEQAKRALEIAAAGG-------------HNLLLV  204 (490)
T ss_pred             CCccchhhHHHHHHHhcCCcCCCCCCccccccccccCcch-hhhcCcHHHHHHHHHHHhcC-------------CcEEEe
Confidence            4555666777777777663 21111111110000001112 57999999998876665543             599999


Q ss_pred             ccCCCcHHHHHHHHHHHhccCCCCCCcee-----------------EEecCCCCchhh---hhhHHh----HHHHHHHhC
Q 036633          245 GPNCSGKAELAKAIANELYDNNDNDNHLI-----------------HFDMGNYTELES---IKHFFD----SLAALVKKR  300 (550)
Q Consensus       245 Gp~GvGKT~lAk~la~~l~~~~~~~~~li-----------------~id~s~~~~~~~---~s~liG----~lt~al~~~  300 (550)
                      ||||||||.+|+.+...|....  ...++                 .....-|...|.   ...|+|    .....+...
T Consensus       205 GpPGtGKTmla~Rl~~lLPpls--~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA  282 (490)
T COG0606         205 GPPGTGKTMLASRLPGLLPPLS--IPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA  282 (490)
T ss_pred             cCCCCchHHhhhhhcccCCCCC--hHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeee
Confidence            9999999999999987775421  00000                 011122333332   234444    122222233


Q ss_pred             CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee-cCCeEEEEeCCCChHHHHHhhhhh---hHhhHHHHhcc
Q 036633          301 PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD-LTNTLIIMTSDLKDEQVYEVMLTA---TYGRVNEVTGS  376 (550)
Q Consensus       301 p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd-~~~~iiI~TsN~g~~~~~~~~~~~---~~~~~~~~l~~  376 (550)
                      .++|+||||.-.....+++.|.+-||+|.+. +...+..|. ..+-.+|+++|.............   ...... .-..
T Consensus       283 H~GVLFLDElpef~~~iLe~LR~PLE~g~i~-IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~-~Y~~  360 (490)
T COG0606         283 HNGVLFLDELPEFKRSILEALREPLENGKII-ISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIK-RYLN  360 (490)
T ss_pred             cCCEEEeeccchhhHHHHHHHhCccccCcEE-EEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHH-HHHH
Confidence            4589999999999999999999999999544 444444444 455668888887543322111000   011111 1123


Q ss_pred             CCChhhhhhccceeEecCCCCCC
Q 036633          377 LFKPSLLKLLDKLVVIDLAVPLL  399 (550)
Q Consensus       377 ~f~p~ll~Rid~ii~f~~~~pL~  399 (550)
                      ..+..|+.|||..+...   .++
T Consensus       361 klSgp~lDRiDl~vev~---~~~  380 (490)
T COG0606         361 KLSGPFLDRIDLMVEVP---RLS  380 (490)
T ss_pred             HhhHHHHhhhhheeccc---CCC
Confidence            45677999999998888   665

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.35  E-value=2.9e-11  Score=128.00  Aligned_cols=150  Identities=21%  Similarity=0.342  Sum_probs=109.3

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI  286 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~  286 (550)
                      .+++-++.++.+..++...             .+++|+||||||||++|+.+|..+.+    +..+.+++|..+....+.
T Consensus       176 d~~i~e~~le~l~~~L~~~-------------~~iil~GppGtGKT~lA~~la~~l~~----~~~~~~v~~VtFHpsySY  238 (459)
T PRK11331        176 DLFIPETTIETILKRLTIK-------------KNIILQGPPGVGKTFVARRLAYLLTG----EKAPQRVNMVQFHQSYSY  238 (459)
T ss_pred             cccCCHHHHHHHHHHHhcC-------------CCEEEECCCCCCHHHHHHHHHHHhcC----CcccceeeEEeecccccH
Confidence            4788888888888887754             48999999999999999999999865    335677888888777777


Q ss_pred             hhHHh-----------------HHHHHHHhCC--CCeEEeccccccCHH-HHHHHHHhhhhccccc-----c--c--cC-
Q 036633          287 KHFFD-----------------SLAALVKKRP--YSVVLFDKIEKANSS-ILNLLLKILKTDFNRK-----A--T--RG-  336 (550)
Q Consensus       287 s~liG-----------------~lt~al~~~p--~~VlllDEIeka~~~-v~~~Ll~~ld~g~~~~-----l--~--d~-  336 (550)
                      ..+++                 .+.......|  ..||+||||+.++++ ++..+++++|.+  .+     +  .  .. 
T Consensus       239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~--~rg~~~~v~l~y~e~d  316 (459)
T PRK11331        239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHD--KRGENWSVPLTYSEND  316 (459)
T ss_pred             HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcccc--ccccccceeeeccccc
Confidence            77663                 2233333333  479999999999975 689999999864  20     1  0  11 


Q ss_pred             C-eEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633          337 I-AAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       337 g-~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~  393 (550)
                      + .-.--.|..||.|.|.....+                 ..++++|+.|+ ..|.+.
T Consensus       317 ~e~f~iP~Nl~IIgTMNt~Drs~-----------------~~lD~AlrRRF-~fi~i~  356 (459)
T PRK11331        317 EERFYVPENVYIIGLMNTADRSL-----------------AVVDYALRRRF-SFIDIE  356 (459)
T ss_pred             cccccCCCCeEEEEecCccccch-----------------hhccHHHHhhh-heEEec
Confidence            1 123347889999999754221                 24789999999 688887

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.35  E-value=2.3e-11  Score=133.44  Aligned_cols=198  Identities=16%  Similarity=0.128  Sum_probs=129.2

Q ss_pred             hhhcCcccCcHHHHH-HHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          202 GRLKKRVFGQNDAID-VIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       202 ~~L~~~viGQ~~ai~-~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      -.+...|+|....+. ..+.++...         +.+. ..++|+|++|+|||+|+.+|+..+... .....++.+++.+
T Consensus       285 ~TFDnFvvG~sN~~A~aaa~avae~---------~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~-~~g~~V~Yitaee  354 (617)
T PRK14086        285 YTFDTFVIGASNRFAHAAAVAVAEA---------PAKAYNPLFIYGESGLGKTHLLHAIGHYARRL-YPGTRVRYVSSEE  354 (617)
T ss_pred             CCHhhhcCCCccHHHHHHHHHHHhC---------ccccCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHH
Confidence            356677888876432 122222221         1222 469999999999999999999987430 0134677888777


Q ss_pred             CCchhhhhhHHh---HHHHHHHhCCCCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCC
Q 036633          280 YTELESIKHFFD---SLAALVKKRPYSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLK  354 (550)
Q Consensus       280 ~~~~~~~s~liG---~lt~al~~~p~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g  354 (550)
                      |......+..-|   .|.+.++  ...+|+||+|+...  +..+..|+.+++.-  .   +       ++.-||+|||..
T Consensus       355 f~~el~~al~~~~~~~f~~~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l--~---e-------~gk~IIITSd~~  420 (617)
T PRK14086        355 FTNEFINSIRDGKGDSFRRRYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTL--H---N-------ANKQIVLSSDRP  420 (617)
T ss_pred             HHHHHHHHHHhccHHHHHHHhh--cCCEEEEehhccccCCHHHHHHHHHHHHHH--H---h-------cCCCEEEecCCC
Confidence            643322111111   2233333  24799999999874  34466667766543  2   1       112267899987


Q ss_pred             hHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc--eeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633          355 DEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK--LVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSA  432 (550)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~--ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a  432 (550)
                      ...+                 ..+.+.|.+|+..  ++.+.   +++.+....|+...+..       .++   .+++++
T Consensus       421 P~eL-----------------~~l~~rL~SRf~~GLvv~I~---~PD~EtR~aIL~kka~~-------r~l---~l~~eV  470 (617)
T PRK14086        421 PKQL-----------------VTLEDRLRNRFEWGLITDVQ---PPELETRIAILRKKAVQ-------EQL---NAPPEV  470 (617)
T ss_pred             hHhh-----------------hhccHHHHhhhhcCceEEcC---CCCHHHHHHHHHHHHHh-------cCC---CCCHHH
Confidence            6544                 3567889999955  55666   89999999999877643       444   889999


Q ss_pred             HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          433 LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       433 ~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++||+.+.-   + |+|.|..+|.+
T Consensus       471 i~yLa~r~~---r-nvR~LegaL~r  491 (617)
T PRK14086        471 LEFIASRIS---R-NIRELEGALIR  491 (617)
T ss_pred             HHHHHHhcc---C-CHHHHHHHHHH
Confidence            999998543   4 78999999987

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.35  E-value=2e-11  Score=128.66  Aligned_cols=208  Identities=14%  Similarity=0.126  Sum_probs=130.3

Q ss_pred             hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC---CCCceeEEecCC
Q 036633          203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND---NDNHLIHFDMGN  279 (550)
Q Consensus       203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~---~~~~li~id~s~  279 (550)
                      ...+.++|.+.-++.+...+...   ..    ...|++++++||||||||++++.+++.+.....   ..-.++.+||..
T Consensus        12 ~~p~~l~gRe~e~~~l~~~l~~~---~~----~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~   84 (365)
T TIGR02928        12 YVPDRIVHRDEQIEELAKALRPI---LR----GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI   84 (365)
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHH---Hc----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence            45568999999999999998865   22    235578999999999999999999988753100   013578899987


Q ss_pred             CCchhhh-h----hH-----------------HhHHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhh---cccccc
Q 036633          280 YTELESI-K----HF-----------------FDSLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKT---DFNRKA  333 (550)
Q Consensus       280 ~~~~~~~-s----~l-----------------iG~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~---g~~~~l  333 (550)
                      +.....+ .    .+                 +..+.+.+.. .+..||+|||++.+.......|..++.-   .  . .
T Consensus        85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~--~-~  161 (365)
T TIGR02928        85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNG--D-L  161 (365)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhcccccc--C-C
Confidence            6543221 1    11                 1122233332 3345899999999953333344444422   2  1 1


Q ss_pred             ccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc-ceeEecCCCCCCHHHHHHHHHHHHH
Q 036633          334 TRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD-KLVVIDLAVPLLDTTRLLLREWACE  412 (550)
Q Consensus       334 ~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid-~ii~f~~~~pL~~e~i~~I~~~~l~  412 (550)
                             ...++.+|+++|...-                  ...+.+.+.+|+. ..|.|.   |++.+++..|+...+.
T Consensus       162 -------~~~~v~lI~i~n~~~~------------------~~~l~~~~~s~~~~~~i~f~---p~~~~e~~~il~~r~~  213 (365)
T TIGR02928       162 -------DNAKVGVIGISNDLKF------------------RENLDPRVKSSLCEEEIIFP---PYDAEELRDILENRAE  213 (365)
T ss_pred             -------CCCeEEEEEEECCcch------------------HhhcCHHHhccCCcceeeeC---CCCHHHHHHHHHHHHH
Confidence                   1135667777775321                  1234566667773 578999   9999999999998774


Q ss_pred             HHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          413 ETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       413 ~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .   .+  .   .-.++++++++++..+....| +.|..-.++..
T Consensus       214 ~---~~--~---~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~  249 (365)
T TIGR02928       214 K---AF--Y---DGVLDDGVIPLCAALAAQEHG-DARKAIDLLRV  249 (365)
T ss_pred             h---hc--c---CCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHH
Confidence            2   11  1   124789998888764432235 55655555554

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK06620 hypothetical protein; Validated

Probab=99.34  E-value=3e-11  Score=117.92  Aligned_cols=145  Identities=17%  Similarity=0.217  Sum_probs=97.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCH-HH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANS-SI  317 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~-~v  317 (550)
                      .+++|+||||+|||++++++++....      .++.  ...+.            .+..+  ...++++|||+.... ..
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~------~~~~--~~~~~------------~~~~~--~~d~lliDdi~~~~~~~l  102 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNA------YIIK--DIFFN------------EEILE--KYNAFIIEDIENWQEPAL  102 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCC------EEcc--hhhhc------------hhHHh--cCCEEEEeccccchHHHH
Confidence            57999999999999999998876422      2211  11100            01111  237999999996542 33


Q ss_pred             HHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc--eeEecCC
Q 036633          318 LNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK--LVVIDLA  395 (550)
Q Consensus       318 ~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~--ii~f~~~  395 (550)
                      +..+-.+.+.|  .              .+++||+.....+                  .+ |++.+|+..  ++.+.  
T Consensus       103 f~l~N~~~e~g--~--------------~ilits~~~p~~l------------------~l-~~L~SRl~~gl~~~l~--  145 (214)
T PRK06620        103 LHIFNIINEKQ--K--------------YLLLTSSDKSRNF------------------TL-PDLSSRIKSVLSILLN--  145 (214)
T ss_pred             HHHHHHHHhcC--C--------------EEEEEcCCCcccc------------------ch-HHHHHHHhCCceEeeC--
Confidence            33333334555  3              2566666443211                  24 889999942  68888  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          396 VPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       396 ~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                       |++.+++..++.+.+..       .|+   .++++++++|+.+.-   | ++|.+.+.++.
T Consensus       146 -~pd~~~~~~~l~k~~~~-------~~l---~l~~ev~~~L~~~~~---~-d~r~l~~~l~~  192 (214)
T PRK06620        146 -SPDDELIKILIFKHFSI-------SSV---TISRQIIDFLLVNLP---R-EYSKIIEILEN  192 (214)
T ss_pred             -CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHcc---C-CHHHHHHHHHH
Confidence             99999998888877643       444   899999999998653   4 67989888886

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=2e-11  Score=135.32  Aligned_cols=160  Identities=24%  Similarity=0.295  Sum_probs=112.5

Q ss_pred             hcCcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          204 LKKRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      .-+.|.|+++|+..|.+.+.=.++    .+.|..   -|.-+||+||||||||.|||++|-...-      ||+.++.|+
T Consensus       309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAK---iPkGvLL~GPPGTGKTLLAKAiAGEAgV------PF~svSGSE  379 (774)
T KOG0731|consen  309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAK---IPKGVLLVGPPGTGKTLLAKAIAGEAGV------PFFSVSGSE  379 (774)
T ss_pred             ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCc---CcCceEEECCCCCcHHHHHHHHhcccCC------ceeeechHH
Confidence            346799999999888776642200    022332   3468899999999999999999988776      999999999


Q ss_pred             CCchhhhhhHHh-------HHHHHHHhCCCCeEEeccccccC------------H---HHHHHHHHhhhhccccccccCC
Q 036633          280 YTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKAN------------S---SILNLLLKILKTDFNRKATRGI  337 (550)
Q Consensus       280 ~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~------------~---~v~~~Ll~~ld~g~~~~l~d~g  337 (550)
                      |.+     .+.|       .|....+.+..++||+|||+...            .   ..+|.||--+| |  . .    
T Consensus       380 FvE-----~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD-g--f-~----  446 (774)
T KOG0731|consen  380 FVE-----MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD-G--F-E----  446 (774)
T ss_pred             HHH-----HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc-C--C-c----
Confidence            854     2333       33333344334899999998542            1   23444444443 3  1 1    


Q ss_pred             eEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633          338 AAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACE  412 (550)
Q Consensus       338 ~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~  412 (550)
                        .. .++|++++||..                     +.++|+|+  +|||..|...   ..+......|.+.++.
T Consensus       447 --~~-~~vi~~a~tnr~---------------------d~ld~allrpGRfdr~i~i~---~p~~~~r~~i~~~h~~  496 (774)
T KOG0731|consen  447 --TS-KGVIVLAATNRP---------------------DILDPALLRPGRFDRQIQID---LPDVKGRASILKVHLR  496 (774)
T ss_pred             --CC-CcEEEEeccCCc---------------------cccCHHhcCCCccccceecc---CCchhhhHHHHHHHhh
Confidence              11 668899999974                     46778887  9999999999   7777888888887774

>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=1.5e-11  Score=125.56  Aligned_cols=185  Identities=16%  Similarity=0.195  Sum_probs=112.3

Q ss_pred             hcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc--hhhhhhHHhHHHHHHHh-CCCCe
Q 036633          229 KKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE--LESIKHFFDSLAALVKK-RPYSV  304 (550)
Q Consensus       229 ~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~--~~~~s~liG~lt~al~~-~p~~V  304 (550)
                      -+.-...+.| .+++|+||||||||..|+.||+..+-      .+-.+..++...  ...++.+- .+-+..++ +.+-+
T Consensus       374 TaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGl------DYA~mTGGDVAPlG~qaVTkiH-~lFDWakkS~rGLl  446 (630)
T KOG0742|consen  374 TANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGL------DYAIMTGGDVAPLGAQAVTKIH-KLFDWAKKSRRGLL  446 (630)
T ss_pred             hcccccccchhhheeeeCCCCCCchHHHHHHHhhcCC------ceehhcCCCccccchHHHHHHH-HHHHHHhhcccceE
Confidence            3445556678 99999999999999999999998755      222222222211  11121111 33333333 44458


Q ss_pred             EEeccccc---------cCH---HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHH
Q 036633          305 VLFDKIEK---------ANS---SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNE  372 (550)
Q Consensus       305 lllDEIek---------a~~---~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~  372 (550)
                      |||||.|.         ++.   +.+|.||  +..|  .         --++.+++++||.+                  
T Consensus       447 lFIDEADAFLceRnktymSEaqRsaLNAlL--fRTG--d---------qSrdivLvlAtNrp------------------  495 (630)
T KOG0742|consen  447 LFIDEADAFLCERNKTYMSEAQRSALNALL--FRTG--D---------QSRDIVLVLATNRP------------------  495 (630)
T ss_pred             EEehhhHHHHHHhchhhhcHHHHHHHHHHH--HHhc--c---------cccceEEEeccCCc------------------
Confidence            89999973         333   3445444  3334  1         11456788999985                  


Q ss_pred             HhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC------------ccccCCHHHHHHHHhcC
Q 036633          373 VTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA------------VIVCPSTSALVHIASNA  440 (550)
Q Consensus       373 ~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~------------~~l~~~~~a~~~L~~~~  440 (550)
                         ..|+.+.-.|||++|.|+   -...++..+++..+|+++...-...+-            ..+.+.......+++..
T Consensus       496 ---gdlDsAV~DRide~veFp---LPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~Ea  569 (630)
T KOG0742|consen  496 ---GDLDSAVNDRIDEVVEFP---LPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEA  569 (630)
T ss_pred             ---cchhHHHHhhhhheeecC---CCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHH
Confidence               468888999999999999   678899999999999887632211110            13454443333333322


Q ss_pred             c-ccCCCcccHHHHHHcc
Q 036633          441 A-RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       441 ~-~~~GaN~R~L~~~i~~  457 (550)
                      . ..-|.+||+|..++-.
T Consensus       570 AkkTeGfSGREiakLva~  587 (630)
T KOG0742|consen  570 AKKTEGFSGREIAKLVAS  587 (630)
T ss_pred             HHhccCCcHHHHHHHHHH
Confidence            2 3335566877766654

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=99.32  E-value=2.8e-11  Score=134.63  Aligned_cols=186  Identities=17%  Similarity=0.134  Sum_probs=121.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhH--HHHHH------------HhCCCCe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS--LAALV------------KKRPYSV  304 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~--lt~al------------~~~p~~V  304 (550)
                      +.+||.|+||||||++|++|+..+..    ..+|+++.++.     +...|+|.  +...+            .+..++|
T Consensus        17 g~vLl~G~~GtgKs~lar~l~~~~~~----~~pfv~i~~~~-----t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~Gv   87 (589)
T TIGR02031        17 GGVAIRARAGTGKTALARALAEILPP----IMPFVELPLGV-----TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGV   87 (589)
T ss_pred             ceEEEEcCCCcHHHHHHHHHHHhCCc----CCCeEecCccc-----chhhcccchhhhhhhhcCcccCCCCCeeeCCCCc
Confidence            89999999999999999999998754    23799888532     23455662  22211            1234579


Q ss_pred             EEeccccccCHHHHHHHHHhhhhccccccccCCeEee-cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh
Q 036633          305 VLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD-LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL  383 (550)
Q Consensus       305 lllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd-~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll  383 (550)
                      ||+|||+.+++.+|+.|+++|++|+++ +...|.... -.++.+|+|+|....                  ...|+++|+
T Consensus        88 L~lDEi~rl~~~~q~~Ll~al~~g~v~-i~r~G~~~~~p~~f~lIAt~np~e~------------------~g~L~~~Ll  148 (589)
T TIGR02031        88 LYVDMANLLDDGLSNRLLQALDEGVVI-VEREGISVVHPAKFALIATYDPAEG------------------GGGLPDHLL  148 (589)
T ss_pred             EeccchhhCCHHHHHHHHHHHHcCCeE-EEECCCceeecCceEEEEecCCccc------------------cCCCCHHHH
Confidence            999999999999999999999999544 332232222 235668899986420                  257999999


Q ss_pred             hhccceeEecCCCCCCHHHHHHHHHHHHHHHH-----------H---HhccCCCccccCCHHHHHHHHhcCcccCCC-cc
Q 036633          384 KLLDKLVVIDLAVPLLDTTRLLLREWACEETK-----------R---RNNDSKAVIVCPSTSALVHIASNAARKYGQ-NG  448 (550)
Q Consensus       384 ~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~-----------~---~l~~~~~~~l~~~~~a~~~L~~~~~~~~Ga-N~  448 (550)
                      +||+..|....++  +.++...|+...+..+.           +   ..++.-- .+.++++++++|+..+. .+|. ..
T Consensus       149 dRf~l~v~~~~~~--~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~-~V~i~~~~~~~l~~~~~-~~gv~s~  224 (589)
T TIGR02031       149 DRLALHVSLEDVA--SQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLP-QVTISAEQVKELVLTAA-SLGISGH  224 (589)
T ss_pred             HhccCeeecCCCC--CHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcC-CccCCHHHHHHHHHHHH-HcCCCCc
Confidence            9998766666222  33445666666542221           1   1112222 56899999999998765 2232 12


Q ss_pred             cHHHHHHc
Q 036633          449 EGLKRWMD  456 (550)
Q Consensus       449 R~L~~~i~  456 (550)
                      |..-.++.
T Consensus       225 Ra~i~~~r  232 (589)
T TIGR02031       225 RADLFAVR  232 (589)
T ss_pred             cHHHHHHH
Confidence            55554444

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.32  E-value=2e-11  Score=138.60  Aligned_cols=173  Identities=13%  Similarity=0.204  Sum_probs=120.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCc-------eeEEecC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNH-------LIHFDMG  278 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~-------li~id~s  278 (550)
                      ..++|.+..+..+...+.+.           ++.+.||+||||||||.+|+.+|..+..   ...|       ++.++++
T Consensus       186 ~~liGR~~ei~~~i~iL~r~-----------~~~n~LLvGppGvGKT~lae~la~~i~~---~~vP~~l~~~~~~~l~~~  251 (758)
T PRK11034        186 DPLIGREKELERAIQVLCRR-----------RKNNPLLVGESGVGKTAIAEGLAWRIVQ---GDVPEVMADCTIYSLDIG  251 (758)
T ss_pred             CcCcCCCHHHHHHHHHHhcc-----------CCCCeEEECCCCCCHHHHHHHHHHHHHh---cCCCchhcCCeEEeccHH
Confidence            46999999999999988865           3457789999999999999999987644   2223       3333433


Q ss_pred             CCCchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          279 NYTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       279 ~~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      .+...   ....|       .+.+.+...+.+|||||||+.+         ..++.+.|..++..|  .           
T Consensus       252 ~llaG---~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g--~-----------  315 (758)
T PRK11034        252 SLLAG---TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--K-----------  315 (758)
T ss_pred             HHhcc---cchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC--C-----------
Confidence            22110   11223       2233344556689999999965         246777888888888  4           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccC--CChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSL--FKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~--f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                        ..+|.+||...                  .+++  .+|+|.+|| +.|.+.   +++.++...|+.....++...   
T Consensus       316 --i~vIgATt~~E------------------~~~~~~~D~AL~rRF-q~I~v~---ePs~~~~~~IL~~~~~~ye~~---  368 (758)
T PRK11034        316 --IRVIGSTTYQE------------------FSNIFEKDRALARRF-QKIDIT---EPSIEETVQIINGLKPKYEAH---  368 (758)
T ss_pred             --eEEEecCChHH------------------HHHHhhccHHHHhhC-cEEEeC---CCCHHHHHHHHHHHHHHhhhc---
Confidence              23788887531                  1122  378999999 589999   999999999988766554432   


Q ss_pred             CCCccccCCHHHHHHHHh
Q 036633          421 SKAVIVCPSTSALVHIAS  438 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~  438 (550)
                      +   .+.++++++...+.
T Consensus       369 h---~v~i~~~al~~a~~  383 (758)
T PRK11034        369 H---DVRYTAKAVRAAVE  383 (758)
T ss_pred             c---CCCcCHHHHHHHHH
Confidence            3   34888988877665

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.30  E-value=2.1e-11  Score=137.20  Aligned_cols=194  Identities=20%  Similarity=0.232  Sum_probs=122.6

Q ss_pred             cccCcHHHHHHHHHHHhcchh--hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          207 RVFGQNDAIDVIFEALTKPKA--AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~--~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      .+.|.+.++..+...+.....  ....+ ...-|..++|+||||||||++|++++..+..      +|+.++++++.+..
T Consensus       153 di~g~~~~~~~l~~i~~~~~~~~~~~~~-~~~~~~gill~G~~G~GKt~~~~~~a~~~~~------~f~~is~~~~~~~~  225 (644)
T PRK10733        153 DVAGCDEAKEEVAELVEYLREPSRFQKL-GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV------PFFTISGSDFVEMF  225 (644)
T ss_pred             HHcCHHHHHHHHHHHHHHhhCHHHHHhc-CCCCCCcEEEECCCCCCHHHHHHHHHHHcCC------CEEEEehHHhHHhh
Confidence            567888888777665543200  00001 0123456999999999999999999999877      99999998875321


Q ss_pred             h---hhhHHhHHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633          285 S---IKHFFDSLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLI  347 (550)
Q Consensus       285 ~---~s~liG~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii  347 (550)
                      .   ...+...+..+ +..+.+||||||||.+.+              .+++.||..+| |    +..      -..+++
T Consensus       226 ~g~~~~~~~~~f~~a-~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~md-g----~~~------~~~viv  293 (644)
T PRK10733        226 VGVGASRVRDMFEQA-KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD-G----FEG------NEGIIV  293 (644)
T ss_pred             hcccHHHHHHHHHHH-HhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhh-c----ccC------CCCeeE
Confidence            1   11111123333 334448999999998732              24555665554 2    111      145789


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                      |+|||..                     ..++|+++  +|+|..|.|.   .++.++...|+..++.+       ..+ .
T Consensus       294 IaaTN~p---------------------~~lD~Al~RpgRfdr~i~v~---~Pd~~~R~~Il~~~~~~-------~~l-~  341 (644)
T PRK10733        294 IAATNRP---------------------DVLDPALLRPGRFDRQVVVG---LPDVRGREQILKVHMRR-------VPL-A  341 (644)
T ss_pred             EEecCCh---------------------hhcCHHHhCCcccceEEEcC---CCCHHHHHHHHHHHhhc-------CCC-C
Confidence            9999974                     46678887  5999999999   88889999998887743       111 1


Q ss_pred             ccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          426 VCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      -.++   ...++... +  |.++.+|.++++.
T Consensus       342 ~~~d---~~~la~~t-~--G~sgadl~~l~~e  367 (644)
T PRK10733        342 PDID---AAIIARGT-P--GFSGADLANLVNE  367 (644)
T ss_pred             CcCC---HHHHHhhC-C--CCCHHHHHHHHHH
Confidence            1112   23344422 2  3355778887765

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=99.30  E-value=8.4e-11  Score=133.11  Aligned_cols=204  Identities=11%  Similarity=0.022  Sum_probs=123.3

Q ss_pred             HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhh--cC-CC------CcCCC-eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAK--KG-LS------SRRQL-GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~--~g-l~------~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +.+..|...+...|+|++.++..|.-++-..-.+.  .| +.      ..-|. .++||+|+||||||.+|+.+++...+
T Consensus       439 ~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR  518 (915)
T PTZ00111        439 MIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPR  518 (915)
T ss_pred             HHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCc
Confidence            44567778888999999999988877664330000  00 00      01123 69999999999999999999997665


Q ss_pred             CC-CCCCceeEEecCCCCchhhhhhHHhHH---HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEe
Q 036633          265 NN-DNDNHLIHFDMGNYTELESIKHFFDSL---AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF  340 (550)
Q Consensus       265 ~~-~~~~~li~id~s~~~~~~~~s~liG~l---t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~v  340 (550)
                      .. .+..++..++|........  ...|..   .+++-....++++|||++++++..|..|+++|+.+++. +.-.|-..
T Consensus       519 ~~ytsG~~~s~vgLTa~~~~~d--~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIs-I~KaGi~~  595 (915)
T PTZ00111        519 SIYTSGKSSSSVGLTASIKFNE--SDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVT-IAKAGIVA  595 (915)
T ss_pred             cccCCCCCCccccccchhhhcc--cccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEE-EecCCcce
Confidence            11 1225667777665421000  001211   12233345689999999999999999999999999322 22223222


Q ss_pred             e-cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          341 D-LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       341 d-~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                      . -.++.||+|+|.-.......      ..+.+  .-.|+|.+++|||-++...  .+++.+.=..|+.+.+
T Consensus       596 tL~ar~rVIAAaNP~~gryd~~------~s~~e--ni~Lp~~LLSRFDLIf~l~--D~~d~~~D~~lA~hI~  657 (915)
T PTZ00111        596 TLKAETAILASCNPINSRYNKN------KAVIE--NINISPSLFTRFDLIYLVL--DHIDQDTDQLISLSIA  657 (915)
T ss_pred             ecCCCeEEEEEcCCcccccCcc------cCccc--ccCCChHHhhhhcEEEEec--CCCChHHHHHHHHHHH
Confidence            2 24677999999742111100      00000  1247899999999776554  1455544444444433

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.29  E-value=5e-11  Score=132.72  Aligned_cols=191  Identities=15%  Similarity=0.136  Sum_probs=130.7

Q ss_pred             hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEec
Q 036633          203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDM  277 (550)
Q Consensus       203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~  277 (550)
                      .....+.|.+.-++.|..+|...   ..|    ..| .+++++||||||||.+++.+.+.|-...    ...-.++.+||
T Consensus       752 YVPD~LPhREeEIeeLasfL~pa---Ikg----sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC  824 (1164)
T PTZ00112        752 VVPKYLPCREKEIKEVHGFLESG---IKQ----SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING  824 (1164)
T ss_pred             cCCCcCCChHHHHHHHHHHHHHH---Hhc----CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence            45678999999999999999876   222    245 5677999999999999999988774210    01124688999


Q ss_pred             CCCCchhhhhh-----HHh--------------HHHHHHH--hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC
Q 036633          278 GNYTELESIKH-----FFD--------------SLAALVK--KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG  336 (550)
Q Consensus       278 s~~~~~~~~s~-----liG--------------~lt~al~--~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~  336 (550)
                      ..+.....+-.     |.|              .+...+.  .....||+|||||.+....++.|+.+++..  . ... 
T Consensus       825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~--~-~s~-  900 (1164)
T PTZ00112        825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWP--T-KIN-  900 (1164)
T ss_pred             CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHh--h-ccC-
Confidence            87765544321     212              1111111  123358999999999887888999998754  2 211 


Q ss_pred             CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc-eeEecCCCCCCHHHHHHHHHHHHHHHH
Q 036633          337 IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK-LVVIDLAVPLLDTTRLLLREWACEETK  415 (550)
Q Consensus       337 g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~-ii~f~~~~pL~~e~i~~I~~~~l~~~~  415 (550)
                            ...+||+.||.-.                  +...+.|.+.+|+.. .|.|.   ||+.+++..|+...+... 
T Consensus       901 ------SKLiLIGISNdlD------------------LperLdPRLRSRLg~eeIvF~---PYTaEQL~dILk~RAe~A-  952 (1164)
T PTZ00112        901 ------SKLVLIAISNTMD------------------LPERLIPRCRSRLAFGRLVFS---PYKGDEIEKIIKERLENC-  952 (1164)
T ss_pred             ------CeEEEEEecCchh------------------cchhhhhhhhhccccccccCC---CCCHHHHHHHHHHHHHhC-
Confidence                  3466888887311                  012345667787742 48899   999999999999888541 


Q ss_pred             HHhccCCCccccCCHHHHHHHHhcCc
Q 036633          416 RRNNDSKAVIVCPSTSALVHIASNAA  441 (550)
Q Consensus       416 ~~l~~~~~~~l~~~~~a~~~L~~~~~  441 (550)
                           .+    .++++|++++++...
T Consensus       953 -----~g----VLdDdAIELIArkVA  969 (1164)
T PTZ00112        953 -----KE----IIDHTAIQLCARKVA  969 (1164)
T ss_pred             -----CC----CCCHHHHHHHHHhhh
Confidence                 12    489999999998554

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.29  E-value=3.5e-11  Score=139.22  Aligned_cols=180  Identities=14%  Similarity=0.180  Sum_probs=123.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      ..|+|.+..+.++...+.+.           .+.+++|+||||||||.+|+.+|..+....    ....+++.+|++.+.
T Consensus       179 ~~~igr~~ei~~~~~~L~r~-----------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~  247 (821)
T CHL00095        179 DPVIGREKEIERVIQILGRR-----------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL  247 (821)
T ss_pred             CCCCCcHHHHHHHHHHHccc-----------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh
Confidence            46999999999999998865           335779999999999999999999875310    123578889987543


Q ss_pred             chhh----hhhHHhHHHHHHHhCCCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEE
Q 036633          282 ELES----IKHFFDSLAALVKKRPYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIM  349 (550)
Q Consensus       282 ~~~~----~s~liG~lt~al~~~p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~  349 (550)
                      ....    ...-+..+.+.+...+..||||||||.+.        .++.+.|...+..|  . +            .+|.
T Consensus       248 ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg--~-l------------~~Ig  312 (821)
T CHL00095        248 AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG--E-L------------QCIG  312 (821)
T ss_pred             ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC--C-c------------EEEE
Confidence            2111    01111123333344555799999998543        25788999999988  4 2            2677


Q ss_pred             eCCCChHHHHHhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 036633          350 TSDLKDEQVYEVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVC  427 (550)
Q Consensus       350 TsN~g~~~~~~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~  427 (550)
                      +||...                  .+++|  .|.|..|+ +.|.+.   +++.++...|+......+.+.   .++   .
T Consensus       313 aTt~~e------------------y~~~ie~D~aL~rRf-~~I~v~---ep~~~e~~aILr~l~~~~e~~---~~v---~  364 (821)
T CHL00095        313 ATTLDE------------------YRKHIEKDPALERRF-QPVYVG---EPSVEETIEILFGLRSRYEKH---HNL---S  364 (821)
T ss_pred             eCCHHH------------------HHHHHhcCHHHHhcc-eEEecC---CCCHHHHHHHHHHHHHHHHHH---cCC---C
Confidence            776421                  01222  68899999 678888   889888888887765554432   333   5


Q ss_pred             CCHHHHHHHHhc
Q 036633          428 PSTSALVHIASN  439 (550)
Q Consensus       428 ~~~~a~~~L~~~  439 (550)
                      ++++++..++..
T Consensus       365 i~deal~~i~~l  376 (821)
T CHL00095        365 ISDKALEAAAKL  376 (821)
T ss_pred             CCHHHHHHHHHH
Confidence            899998888764

>PRK09087 hypothetical protein; Validated

Probab=99.28  E-value=1.7e-10  Score=113.53  Aligned_cols=177  Identities=15%  Similarity=0.108  Sum_probs=113.2

Q ss_pred             hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      .+...|+|.....  +...+...         +..+ ..++|+||+|+|||+|++++++....        ..++...+.
T Consensus        19 ~~~~Fi~~~~N~~--a~~~l~~~---------~~~~~~~l~l~G~~GsGKThLl~~~~~~~~~--------~~i~~~~~~   79 (226)
T PRK09087         19 GRDDLLVTESNRA--AVSLVDHW---------PNWPSPVVVLAGPVGSGKTHLASIWREKSDA--------LLIHPNEIG   79 (226)
T ss_pred             ChhceeecCchHH--HHHHHHhc---------ccCCCCeEEEECCCCCCHHHHHHHHHHhcCC--------EEecHHHcc
Confidence            3556677664433  22244433         1123 46999999999999999999876422        234432221


Q ss_pred             chhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633          282 ELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV  361 (550)
Q Consensus       282 ~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~  361 (550)
                      .         .+...+..   ++|+||+++.... .+..|+.++..-  .   +       .+..+|+||+.....+   
T Consensus        80 ~---------~~~~~~~~---~~l~iDDi~~~~~-~~~~lf~l~n~~--~---~-------~g~~ilits~~~p~~~---  131 (226)
T PRK09087         80 S---------DAANAAAE---GPVLIEDIDAGGF-DETGLFHLINSV--R---Q-------AGTSLLMTSRLWPSSW---  131 (226)
T ss_pred             h---------HHHHhhhc---CeEEEECCCCCCC-CHHHHHHHHHHH--H---h-------CCCeEEEECCCChHHh---
Confidence            1         22222222   5899999987642 234455555321  1   1       1123778887655433   


Q ss_pred             hhhhhHhhHHHHhccCCChhhhhhcc--ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633          362 MLTATYGRVNEVTGSLFKPSLLKLLD--KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN  439 (550)
Q Consensus       362 ~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~  439 (550)
                                    ..+.|++.+|+.  .++.+.   |++.+++..++.+.+..       .++   .++++++++|+.+
T Consensus       132 --------------~~~~~dL~SRl~~gl~~~l~---~pd~e~~~~iL~~~~~~-------~~~---~l~~ev~~~La~~  184 (226)
T PRK09087        132 --------------NVKLPDLKSRLKAATVVEIG---EPDDALLSQVIFKLFAD-------RQL---YVDPHVVYYLVSR  184 (226)
T ss_pred             --------------ccccccHHHHHhCCceeecC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHH
Confidence                          345788999996  477888   99999999999988854       444   8999999999986


Q ss_pred             CcccCCCcccHHHHHHcc
Q 036633          440 AARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       440 ~~~~~GaN~R~L~~~i~~  457 (550)
                      ..   | +.|.+..++++
T Consensus       185 ~~---r-~~~~l~~~l~~  198 (226)
T PRK09087        185 ME---R-SLFAAQTIVDR  198 (226)
T ss_pred             hh---h-hHHHHHHHHHH
Confidence            53   4 56777776665

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=3.5e-11  Score=118.57  Aligned_cols=178  Identities=17%  Similarity=0.271  Sum_probs=117.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ..|-|-+.|++++.+++....-=-.-+...++| ..+||+|||||||++||+++|.....      .|+.+.-|++    
T Consensus       133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS------TFFSvSSSDL----  202 (439)
T KOG0739|consen  133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS------TFFSVSSSDL----  202 (439)
T ss_pred             hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC------ceEEeehHHH----
Confidence            457899999999999987651000112234578 89999999999999999999988644      7888876665    


Q ss_pred             hhhhHHh-------HHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          285 SIKHFFD-------SLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       285 ~~s~liG-------~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                       +|++.|       .|-+..|.+.-+|||+|||+.+.           ..+-.-||--++ |         .-.|-..++
T Consensus       203 -vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq-G---------VG~d~~gvL  271 (439)
T KOG0739|consen  203 -VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-G---------VGNDNDGVL  271 (439)
T ss_pred             -HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh-c---------cccCCCceE
Confidence             677777       55666676666999999998653           234444443332 2         112335577


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH-HHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD-TTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~-e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                      ++-+||++                     -.++.+++.|++.-|..+    |.+ .....+.+..|         -.. .
T Consensus       272 VLgATNiP---------------------w~LDsAIRRRFekRIYIP----LPe~~AR~~MF~lhl---------G~t-p  316 (439)
T KOG0739|consen  272 VLGATNIP---------------------WVLDSAIRRRFEKRIYIP----LPEAHARARMFKLHL---------GDT-P  316 (439)
T ss_pred             EEecCCCc---------------------hhHHHHHHHHhhcceecc----CCcHHHhhhhheecc---------CCC-c
Confidence            88889985                     245667888887666664    443 33333333333         122 4


Q ss_pred             ccCCHHHHHHHHhc
Q 036633          426 VCPSTSALVHIASN  439 (550)
Q Consensus       426 l~~~~~a~~~L~~~  439 (550)
                      ..+++.-...|+..
T Consensus       317 ~~LT~~d~~eL~~k  330 (439)
T KOG0739|consen  317 HVLTEQDFKELARK  330 (439)
T ss_pred             cccchhhHHHHHhh
Confidence            56777788888864

>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]

Probab=99.27  E-value=8.2e-11  Score=115.69  Aligned_cols=115  Identities=15%  Similarity=0.172  Sum_probs=89.4

Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc-cCCChh
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG-SLFKPS  381 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~-~~f~p~  381 (550)
                      +|+|+||++-++-+.+..|.+.++..    +          --++||+||.|-..+....         ..+. -..+++
T Consensus       298 GVLFIDEVhMLDiEcFTyL~kalES~----i----------aPivifAsNrG~~~irGt~---------d~~sPhGip~d  354 (456)
T KOG1942|consen  298 GVLFIDEVHMLDIECFTYLHKALESP----I----------APIVIFASNRGMCTIRGTE---------DILSPHGIPPD  354 (456)
T ss_pred             cceEeeehhhhhhHHHHHHHHHhcCC----C----------CceEEEecCCcceeecCCc---------CCCCCCCCCHH
Confidence            79999999999999999999999987    2          2368999999876653311         0111 236899


Q ss_pred             hhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc-hhh
Q 036633          382 LLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ-RPS  460 (550)
Q Consensus       382 ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~-~~l  460 (550)
                      ++.|+ .||...   +++++++++|+......       .   .+.+++++++.|+..+.      -+.|+.+++- .|.
T Consensus       355 llDRl-~Iirt~---~y~~~e~r~Ii~~Ra~~-------E---~l~~~e~a~~~l~~~gt------~tsLRy~vqLl~p~  414 (456)
T KOG1942|consen  355 LLDRL-LIIRTL---PYDEEEIRQIIKIRAQV-------E---GLQVEEEALDLLAEIGT------STSLRYAVQLLTPA  414 (456)
T ss_pred             Hhhhe-eEEeec---cCCHHHHHHHHHHHHhh-------h---cceecHHHHHHHHhhcc------chhHHHHHHhcCHH
Confidence            99999 899999   99999999999876632       4   34889999999998543      2778888887 443

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.27  E-value=3.7e-11  Score=137.69  Aligned_cols=160  Identities=20%  Similarity=0.249  Sum_probs=110.4

Q ss_pred             cccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          207 RVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      .|.|.+.+++.+.+.+...+.     ...|+.   .|..+||+||||||||++|+++|..+..      +++.++++++.
T Consensus       179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~---~~~giLL~GppGtGKT~laraia~~~~~------~~i~i~~~~i~  249 (733)
T TIGR01243       179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIE---PPKGVLLYGPPGTGKTLLAKAVANEAGA------YFISINGPEIM  249 (733)
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC---CCceEEEECCCCCChHHHHHHHHHHhCC------eEEEEecHHHh
Confidence            488999999999888754311     022331   2368999999999999999999999876      89999987654


Q ss_pred             chhh---hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633          282 ELES---IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLI  347 (550)
Q Consensus       282 ~~~~---~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii  347 (550)
                      ....   ...+...+..+....| +|||||||+.+.           ..+++.|+..++.-  .   .      -.++++
T Consensus       250 ~~~~g~~~~~l~~lf~~a~~~~p-~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l--~---~------~~~viv  317 (733)
T TIGR01243       250 SKYYGESEERLREIFKEAEENAP-SIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL--K---G------RGRVIV  317 (733)
T ss_pred             cccccHHHHHHHHHHHHHHhcCC-cEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc--c---c------CCCEEE
Confidence            3211   1111113333333444 899999998763           34677888888632  1   1      134667


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                      |.|||..                     ..++|++.  +|++..+.|.   +++.++...|+....
T Consensus       318 I~atn~~---------------------~~ld~al~r~gRfd~~i~i~---~P~~~~R~~Il~~~~  359 (733)
T TIGR01243       318 IGATNRP---------------------DALDPALRRPGRFDREIVIR---VPDKRARKEILKVHT  359 (733)
T ss_pred             EeecCCh---------------------hhcCHHHhCchhccEEEEeC---CcCHHHHHHHHHHHh
Confidence            8788863                     24567776  4899999999   778888888888544

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.26  E-value=4.9e-11  Score=123.50  Aligned_cols=129  Identities=21%  Similarity=0.228  Sum_probs=93.9

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------CCCceeEEecCCCCchhhhhhHHh-----HHH
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNND------------------NDNHLIHFDMGNYTELESIKHFFD-----SLA  294 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------~~~~li~id~s~~~~~~~~s~liG-----~lt  294 (550)
                      |..+||+||+|+|||++|+.+|+.+...+.                  ++..+..+.-.+-      +..++     .+.
T Consensus        22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~------~~~i~id~iR~l~   95 (328)
T PRK05707         22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA------DKTIKVDQVRELV   95 (328)
T ss_pred             ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC------CCCCCHHHHHHHH
Confidence            478999999999999999999999986210                  0112222221100      01122     344


Q ss_pred             HHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhH
Q 036633          295 ALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRV  370 (550)
Q Consensus       295 ~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~  370 (550)
                      +.+..    .++.|++||++|+++.+.+|.||+.+|+.  .           .+++||++|+..                
T Consensus        96 ~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP--p-----------~~~~fiL~t~~~----------------  146 (328)
T PRK05707         96 SFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP--S-----------GDTVLLLISHQP----------------  146 (328)
T ss_pred             HHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC--C-----------CCeEEEEEECCh----------------
Confidence            44443    34679999999999999999999999987  5           567888888764                


Q ss_pred             HHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633          371 NEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA  410 (550)
Q Consensus       371 ~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~  410 (550)
                           ..+.|.++||| ..+.|.   |++.+++...+...
T Consensus       147 -----~~ll~TI~SRc-~~~~~~---~~~~~~~~~~L~~~  177 (328)
T PRK05707        147 -----SRLLPTIKSRC-QQQACP---LPSNEESLQWLQQA  177 (328)
T ss_pred             -----hhCcHHHHhhc-eeeeCC---CcCHHHHHHHHHHh
Confidence                 35678899999 789999   99999888776543

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.26  E-value=5.2e-11  Score=137.82  Aligned_cols=174  Identities=14%  Similarity=0.186  Sum_probs=116.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      +.|+||++-+.+++..+.+.           +..+.+|+||||||||++|+.||..+....    ....+++.+|++...
T Consensus       178 ~~vigr~~ei~~~i~iL~r~-----------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~  246 (857)
T PRK10865        178 DPVIGRDEEIRRTIQVLQRR-----------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV  246 (857)
T ss_pred             CcCCCCHHHHHHHHHHHhcC-----------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh
Confidence            56999999999999888765           335889999999999999999999884310    123578888888754


Q ss_pred             chhhhhhHHh-------HHHHHH-HhCCCCeEEeccccccCH--------HHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633          282 ELESIKHFFD-------SLAALV-KKRPYSVVLFDKIEKANS--------SILNLLLKILKTDFNRKATRGIAAFDLTNT  345 (550)
Q Consensus       282 ~~~~~s~liG-------~lt~al-~~~p~~VlllDEIeka~~--------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~  345 (550)
                      ...   ...|       .+.+.+ +.....|||||||+.+..        +.++.|.+.+..|  . +            
T Consensus       247 ag~---~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g--~-l------------  308 (857)
T PRK10865        247 AGA---KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--E-L------------  308 (857)
T ss_pred             hcc---chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC--C-C------------
Confidence            221   1222       122222 223447999999997753        5799999999999  4 2            


Q ss_pred             EEEEeCCCChHHHHHhhhhhhHhhHHHHhccC--CChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSL--FKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~--f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      .+|.+|+...-                  +.+  .+++|.+||+. |.+.   ..+.++...|+.....    ++..+ .
T Consensus       309 ~~IgaTt~~e~------------------r~~~~~d~al~rRf~~-i~v~---eP~~~~~~~iL~~l~~----~~e~~-~  361 (857)
T PRK10865        309 HCVGATTLDEY------------------RQYIEKDAALERRFQK-VFVA---EPSVEDTIAILRGLKE----RYELH-H  361 (857)
T ss_pred             eEEEcCCCHHH------------------HHHhhhcHHHHhhCCE-EEeC---CCCHHHHHHHHHHHhh----hhccC-C
Confidence            37888876321                  122  47899999964 4455   4477888877754332    33221 1


Q ss_pred             ccccCCHHHHHHH
Q 036633          424 VIVCPSTSALVHI  436 (550)
Q Consensus       424 ~~l~~~~~a~~~L  436 (550)
                       .+.++++++...
T Consensus       362 -~v~~~d~a~~~a  373 (857)
T PRK10865        362 -HVQITDPAIVAA  373 (857)
T ss_pred             -CCCcCHHHHHHH
Confidence             346677766554

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=2.5e-11  Score=120.82  Aligned_cols=137  Identities=25%  Similarity=0.357  Sum_probs=100.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCC---CCCCceeEEecCCCCchhhhhhHHh-----------HHHHHHHhCCCC-
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNN---DNDNHLIHFDMGNYTELESIKHFFD-----------SLAALVKKRPYS-  303 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~---~~~~~li~id~s~~~~~~~~s~liG-----------~lt~al~~~p~~-  303 (550)
                      ..+|++||||||||+|+++||+.|.-+.   -....++.+|+..+     .|++|+           .+.+.+.. ++. 
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsL-----FSKWFsESgKlV~kmF~kI~ELv~d-~~~l  251 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSL-----FSKWFSESGKLVAKMFQKIQELVED-RGNL  251 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHH-----HHHHHhhhhhHHHHHHHHHHHHHhC-CCcE
Confidence            4789999999999999999999986431   12335666775432     455555           44444444 333 


Q ss_pred             -eEEeccccccCH---------------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhH
Q 036633          304 -VVLFDKIEKANS---------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATY  367 (550)
Q Consensus       304 -VlllDEIeka~~---------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~  367 (550)
                       .|++||+|.+..               .|.|.||.-+|.=  +         ...|++|.+|||+.             
T Consensus       252 VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl--K---------~~~NvliL~TSNl~-------------  307 (423)
T KOG0744|consen  252 VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL--K---------RYPNVLILATSNLT-------------  307 (423)
T ss_pred             EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh--c---------cCCCEEEEeccchH-------------
Confidence             467999986421               4889999999855  4         23789999999974             


Q ss_pred             hhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHH
Q 036633          368 GRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKR  416 (550)
Q Consensus       368 ~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~  416 (550)
                              ..++-+|+.|-|.+....   |.+.+.+..|++..+.++..
T Consensus       308 --------~siD~AfVDRADi~~yVG---~Pt~~ai~~IlkscieEL~~  345 (423)
T KOG0744|consen  308 --------DSIDVAFVDRADIVFYVG---PPTAEAIYEILKSCIEELIS  345 (423)
T ss_pred             --------HHHHHHhhhHhhheeecC---CccHHHHHHHHHHHHHHHHh
Confidence                    456678999999777777   88999999999988876553

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.26  E-value=1.7e-10  Score=122.78  Aligned_cols=203  Identities=16%  Similarity=0.119  Sum_probs=130.0

Q ss_pred             hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633          204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~  283 (550)
                      ....++|.+.-++.+...+...   ..    ..+|.+++++||||||||++++.+++.+...+ ..-.++.+||......
T Consensus        28 ~P~~l~~Re~e~~~l~~~l~~~---~~----~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~~~   99 (394)
T PRK00411         28 VPENLPHREEQIEELAFALRPA---LR----GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDRTR   99 (394)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHH---hC----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCCCH
Confidence            5678999999999999998765   22    23556789999999999999999999875411 1246888999876542


Q ss_pred             hhh--------------------hhHHhHHHHHHHh-CCCCeEEeccccccC----HHHHHHHHHhhhhccccccccCCe
Q 036633          284 ESI--------------------KHFFDSLAALVKK-RPYSVVLFDKIEKAN----SSILNLLLKILKTDFNRKATRGIA  338 (550)
Q Consensus       284 ~~~--------------------s~liG~lt~al~~-~p~~VlllDEIeka~----~~v~~~Ll~~ld~g~~~~l~d~g~  338 (550)
                      ..+                    ..++..+.+.+.. ....||+|||++.+.    .+.+..|++.++.-  .     + 
T Consensus       100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~--~-----~-  171 (394)
T PRK00411        100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY--P-----G-  171 (394)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc--C-----C-
Confidence            211                    1111233334433 234689999999875    44555555555432  1     1 


Q ss_pred             EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc-ceeEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 036633          339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD-KLVVIDLAVPLLDTTRLLLREWACEETKRR  417 (550)
Q Consensus       339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid-~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~  417 (550)
                          .++.+|+++|....                  ...+.|.+.+|+. ..|.|.   |++.+++..|+...+..   .
T Consensus       172 ----~~v~vI~i~~~~~~------------------~~~l~~~~~s~~~~~~i~f~---py~~~e~~~il~~r~~~---~  223 (394)
T PRK00411        172 ----ARIGVIGISSDLTF------------------LYILDPRVKSVFRPEEIYFP---PYTADEIFDILKDRVEE---G  223 (394)
T ss_pred             ----CeEEEEEEECCcch------------------hhhcCHHHHhcCCcceeecC---CCCHHHHHHHHHHHHHh---h
Confidence                24557777774211                  1235566666663 468999   99999999999887732   1


Q ss_pred             hccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633          418 NNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMD  456 (550)
Q Consensus       418 l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~  456 (550)
                      +  .   .-.+++++++.+++......| +.|-.-.++.
T Consensus       224 ~--~---~~~~~~~~l~~i~~~~~~~~G-d~r~a~~ll~  256 (394)
T PRK00411        224 F--Y---PGVVDDEVLDLIADLTAREHG-DARVAIDLLR  256 (394)
T ss_pred             c--c---cCCCCHhHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence            1  1   124799999999875432234 4454445544

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=99.24  E-value=6e-11  Score=132.29  Aligned_cols=129  Identities=16%  Similarity=0.153  Sum_probs=82.8

Q ss_pred             CCeEEeccccccCHHHHHHHHHhhhhccccccccC-Ce------Ee----ecCCeEEEEeCCCChHHHHHhhhhhhHhhH
Q 036633          302 YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IA------AF----DLTNTLIIMTSDLKDEQVYEVMLTATYGRV  370 (550)
Q Consensus       302 ~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~------~v----d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~  370 (550)
                      ++++||||++.+++.+|..|+++|++|  . +.-. +.      .+    ---++.+|+++|...               
T Consensus       218 gGtL~Ldei~~L~~~~q~~Ll~~L~~~--~-i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~---------------  279 (608)
T TIGR00764       218 KGVLYIDEIKTMPLEVQQYLLTALQDK--K-FPITGQSENSSGAMVRTEPVPCDFILVASGNLDD---------------  279 (608)
T ss_pred             CCEEEEEChHhCCHHHHHHHHHHHHhC--c-EEecCccccccccccCCCCCccceEEEEECCHHH---------------
Confidence            479999999999999999999999999  4 3332 10      00    012456899988521               


Q ss_pred             HHHhccCCChhhhhhcc---ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc-----
Q 036633          371 NEVTGSLFKPSLLKLLD---KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAAR-----  442 (550)
Q Consensus       371 ~~~l~~~f~p~ll~Rid---~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~-----  442 (550)
                          ...|+|+|++||+   ..+.|..-.|.+.+....++.. +   .+.+++.|. .-.++++++..|.++...     
T Consensus       280 ----l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~-i---~~~~~r~G~-l~~~s~~Av~~Li~~~~R~ag~r  350 (608)
T TIGR00764       280 ----LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQF-V---AQEVKKDGR-IPHFTRDAVEEIVREAQRRAGRK  350 (608)
T ss_pred             ----HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHH-H---HHHHHHhCC-CCcCCHHHHHHHHHHHHHHHhcc
Confidence                1368999999998   5667763334456666555443 2   222333444 347899999999864221     


Q ss_pred             -cCCCcccHHHHHHcc
Q 036633          443 -KYGQNGEGLKRWMDQ  457 (550)
Q Consensus       443 -~~GaN~R~L~~~i~~  457 (550)
                       ....+.|.|.++++.
T Consensus       351 ~~lsl~~R~L~~llR~  366 (608)
T TIGR00764       351 DHLTLRLRELGGLVRA  366 (608)
T ss_pred             cccCCCHHHHHHHHHH
Confidence             112244777777765

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=99.24  E-value=6.8e-11  Score=112.97  Aligned_cols=174  Identities=11%  Similarity=0.172  Sum_probs=121.2

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      -+.+||.++.++++.-.....          +- .+++|.||||||||+.+.+||+.|.+.. ..+.+..+|.|+-..-.
T Consensus        26 l~dIVGNe~tv~rl~via~~g----------nm-P~liisGpPG~GKTTsi~~LAr~LLG~~-~ke~vLELNASdeRGID   93 (333)
T KOG0991|consen   26 LQDIVGNEDTVERLSVIAKEG----------NM-PNLIISGPPGTGKTTSILCLARELLGDS-YKEAVLELNASDERGID   93 (333)
T ss_pred             HHHhhCCHHHHHHHHHHHHcC----------CC-CceEeeCCCCCchhhHHHHHHHHHhChh-hhhHhhhccCccccccH
Confidence            357999999999976655533          22 4899999999999999999999998721 22356777877655444


Q ss_pred             hhhhHHhHHHHH-HHh--CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633          285 SIKHFFDSLAAL-VKK--RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV  361 (550)
Q Consensus       285 ~~s~liG~lt~a-l~~--~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~  361 (550)
                      .+..-|..|.+. +.-  ..+.||+|||.|.+....|+.|.+.++=-  .           +.|.|.+++|.....    
T Consensus        94 vVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy--S-----------~ttRFalaCN~s~KI----  156 (333)
T KOG0991|consen   94 VVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY--S-----------NTTRFALACNQSEKI----  156 (333)
T ss_pred             HHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHH--c-----------ccchhhhhhcchhhh----
Confidence            443333333332 222  23469999999999999999999999855  3           345689999975322    


Q ss_pred             hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHh
Q 036633          362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIAS  438 (550)
Q Consensus       362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~  438 (550)
                                       -+++-+|| .++.|.   .|+..++..-+....       +..   .+.++++.++.+.-
T Consensus       157 -----------------iEPIQSRC-AiLRys---klsd~qiL~Rl~~v~-------k~E---kv~yt~dgLeaiif  202 (333)
T KOG0991|consen  157 -----------------IEPIQSRC-AILRYS---KLSDQQILKRLLEVA-------KAE---KVNYTDDGLEAIIF  202 (333)
T ss_pred             -----------------hhhHHhhh-Hhhhhc---ccCHHHHHHHHHHHH-------HHh---CCCCCcchHHHhhh
Confidence                             23488999 799999   999876654333322       123   34777777777654

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=99.24  E-value=1.7e-10  Score=118.93  Aligned_cols=145  Identities=19%  Similarity=0.203  Sum_probs=105.7

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------CCCc
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------NDNH  271 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------~~~~  271 (550)
                      .+..+.+.+.+++...   +       -|..+||.||+|+||+++|+.+|+.+...+.                  ++..
T Consensus         6 W~~~~~~~l~~~~~~~---r-------l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD   75 (325)
T PRK06871          6 WLQPTYQQITQAFQQG---L-------GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPD   75 (325)
T ss_pred             chHHHHHHHHHHHHcC---C-------cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence            4566677777777765   1       3489999999999999999999999976210                  0111


Q ss_pred             eeEEecCCCCchhhhhhHHh-----HHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          272 LIHFDMGNYTELESIKHFFD-----SLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       272 li~id~s~~~~~~~~s~liG-----~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      +..+.-.       ...-+|     .+.+.+...    ++.|++||++|+++...+|.||+.||+.  .           
T Consensus        76 ~~~i~p~-------~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP--p-----------  135 (325)
T PRK06871         76 FHILEPI-------DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEP--R-----------  135 (325)
T ss_pred             EEEEccc-------cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCC--C-----------
Confidence            2222110       011133     444444443    4579999999999999999999999998  6           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHH
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW  409 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~  409 (550)
                      .+++||++|+..                     ....|.++||| +.+.|.   |++.+++...+..
T Consensus       136 ~~~~fiL~t~~~---------------------~~llpTI~SRC-~~~~~~---~~~~~~~~~~L~~  177 (325)
T PRK06871        136 PNTYFLLQADLS---------------------AALLPTIYSRC-QTWLIH---PPEEQQALDWLQA  177 (325)
T ss_pred             CCeEEEEEECCh---------------------HhCchHHHhhc-eEEeCC---CCCHHHHHHHHHH
Confidence            778899988753                     35677899999 899999   9999988776654

>smart00350 MCM minichromosome maintenance proteins

Probab=99.24  E-value=6.7e-11  Score=129.88  Aligned_cols=199  Identities=13%  Similarity=0.086  Sum_probs=121.2

Q ss_pred             HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcC-CCC--cCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCC
Q 036633          195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKG-LSS--RRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDN  270 (550)
Q Consensus       195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~g-l~~--~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~  270 (550)
                      +.+..+...+...++|++.++..+.-++...   ... ..+  .-+. .++||+|+||||||.+|+.+++.+.+   .  
T Consensus       192 ~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg---~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r---~--  263 (509)
T smart00350      192 DIYERLSRSLAPSIYGHEDIKKAILLLLFGG---VHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPR---A--  263 (509)
T ss_pred             HHHHHHHHhhCccccCcHHHHHHHHHHHhCC---CccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCc---c--
Confidence            4466788889999999999987776666442   100 000  1112 58999999999999999999998754   1  


Q ss_pred             ceeE---EecCCCCchhhhhhHHhHH---HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec-C
Q 036633          271 HLIH---FDMGNYTELESIKHFFDSL---AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL-T  343 (550)
Q Consensus       271 ~li~---id~s~~~~~~~~s~liG~l---t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~-~  343 (550)
                      .++.   .++..+.....-...-|.+   .+++.....+++++||++++++..|..|+++|+.+++. +.-.|....+ .
T Consensus       264 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~-i~k~G~~~~l~~  342 (509)
T smart00350      264 VYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTIS-IAKAGITTTLNA  342 (509)
T ss_pred             eEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEE-EEeCCEEEEecC
Confidence            2332   1222222100000011110   11222345689999999999999999999999999332 2222443333 3


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACE  412 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~  412 (550)
                      ++.||+|+|.-......   +   ..+.+  .-.++|++++|||-++.+.  .+.+.+.-..|+.+.+.
T Consensus       343 ~~~viAa~NP~~g~y~~---~---~~~~~--n~~l~~~lLsRFdLi~~~~--d~~~~~~d~~i~~~i~~  401 (509)
T smart00350      343 RCSVLAAANPIGGRYDP---K---LTPEE--NIDLPAPILSRFDLLFVVL--DEVDEERDRELAKHVVD  401 (509)
T ss_pred             CcEEEEEeCCCCcccCC---C---cChhh--ccCCChHHhCceeeEEEec--CCCChHHHHHHHHHHHH
Confidence            57799999964211000   0   00000  0157999999999766553  15666666777777654

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.23  E-value=1e-10  Score=135.78  Aligned_cols=176  Identities=16%  Similarity=0.198  Sum_probs=118.5

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      ..++||++.+.++...+.+.           ...+.+|+||||||||++|+.+|..+....    ....+++.+|++.+.
T Consensus       173 ~~~igr~~ei~~~~~~l~r~-----------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~  241 (852)
T TIGR03346       173 DPVIGRDEEIRRTIQVLSRR-----------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI  241 (852)
T ss_pred             CcCCCcHHHHHHHHHHHhcC-----------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh
Confidence            45999999999998888765           235778999999999999999999874310    123467888877653


Q ss_pred             chhhhhhHHh-------HHHHHHHh-CCCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633          282 ELESIKHFFD-------SLAALVKK-RPYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNT  345 (550)
Q Consensus       282 ~~~~~s~liG-------~lt~al~~-~p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~  345 (550)
                      ...   ...|       .+...+.. ....|||||||+.+.        .++.+.|...+..|  . +            
T Consensus       242 a~~---~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g--~-i------------  303 (852)
T TIGR03346       242 AGA---KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG--E-L------------  303 (852)
T ss_pred             hcc---hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC--c-e------------
Confidence            211   1122       22222222 335799999999764        35788888888888  4 2            


Q ss_pred             EEEEeCCCChHHHHHhhhhhhHhhHHHHhccC--CChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSL--FKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~--f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      .+|.+||...                  .+.+  .+|+|.+|| +.|.+.   +++.++...|+.....++..   .+  
T Consensus       304 ~~IgaTt~~e------------------~r~~~~~d~al~rRf-~~i~v~---~p~~~~~~~iL~~~~~~~e~---~~--  356 (852)
T TIGR03346       304 HCIGATTLDE------------------YRKYIEKDAALERRF-QPVFVD---EPTVEDTISILRGLKERYEV---HH--  356 (852)
T ss_pred             EEEEeCcHHH------------------HHHHhhcCHHHHhcC-CEEEeC---CCCHHHHHHHHHHHHHHhcc---cc--
Confidence            3677777521                  1122  489999999 567777   67888888887655443321   13  


Q ss_pred             ccccCCHHHHHHHHh
Q 036633          424 VIVCPSTSALVHIAS  438 (550)
Q Consensus       424 ~~l~~~~~a~~~L~~  438 (550)
                       .+.++++++...+.
T Consensus       357 -~v~~~d~~i~~~~~  370 (852)
T TIGR03346       357 -GVRITDPAIVAAAT  370 (852)
T ss_pred             -CCCCCHHHHHHHHH
Confidence             34677877777764

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.6e-10  Score=125.02  Aligned_cols=230  Identities=19%  Similarity=0.217  Sum_probs=141.2

Q ss_pred             HhhhhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCC--CCcC
Q 036633          159 VHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGL--SSRR  236 (550)
Q Consensus       159 ~~~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl--~~~~  236 (550)
                      ++.+.+....++.+++.+-++.++-.-+..+......   .+   =-..|-|-.++++.+.+.+.+.- ++--+  ..|-
T Consensus       626 leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~t---gi---~w~digg~~~~k~~l~~~i~~P~-kyp~if~~~pl  698 (952)
T KOG0735|consen  626 LERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKST---GI---RWEDIGGLFEAKKVLEEVIEWPS-KYPQIFANCPL  698 (952)
T ss_pred             HHHhccCcccchHHHHHHHHHhcChHHhhhccccccC---CC---CceecccHHHHHHHHHHHHhccc-cchHHHhhCCc
Confidence            4444444447888888887776542111111000000   00   11456777888888877776650 00000  0121


Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--------HHHHHHHhCCCCeEEe
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--------SLAALVKKRPYSVVLF  307 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--------~lt~al~~~p~~Vlll  307 (550)
                      +- ..+||+||||||||.+|.++|....-      .||.+-..++     .++.||        .|..|-..+| +|+||
T Consensus       699 r~~~giLLyGppGcGKT~la~a~a~~~~~------~fisvKGPEl-----L~KyIGaSEq~vR~lF~rA~~a~P-CiLFF  766 (952)
T KOG0735|consen  699 RLRTGILLYGPPGCGKTLLASAIASNSNL------RFISVKGPEL-----LSKYIGASEQNVRDLFERAQSAKP-CILFF  766 (952)
T ss_pred             ccccceEEECCCCCcHHHHHHHHHhhCCe------eEEEecCHHH-----HHHHhcccHHHHHHHHHHhhccCC-eEEEe
Confidence            22 68899999999999999999988755      7777765554     678888        2233323355 99999


Q ss_pred             ccccccCH-----------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc
Q 036633          308 DKIEKANS-----------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS  376 (550)
Q Consensus       308 DEIeka~~-----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~  376 (550)
                      ||+|..-|           .|.|.||.-||.-  . -        +..+.|+++|..+                     .
T Consensus       767 DEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~--E-g--------l~GV~i~aaTsRp---------------------d  814 (952)
T KOG0735|consen  767 DEFDSIAPKRGHDSTGVTDRVVNQLLTELDGA--E-G--------LDGVYILAATSRP---------------------D  814 (952)
T ss_pred             ccccccCcccCCCCCCchHHHHHHHHHhhccc--c-c--------cceEEEEEecCCc---------------------c
Confidence            99998755           5899999888754  3 1        2345556655543                     4


Q ss_pred             CCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH-HHHHHHhcCcccCCCcccHHHH
Q 036633          377 LFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS-ALVHIASNAARKYGQNGEGLKR  453 (550)
Q Consensus       377 ~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~-a~~~L~~~~~~~~GaN~R~L~~  453 (550)
                      .++|+++  +|+|..|.-+   ..++.+..+|+...-+            ++..+++ -+++++...-.-.|   -+|+.
T Consensus       815 liDpALLRpGRlD~~v~C~---~P~~~eRl~il~~ls~------------s~~~~~~vdl~~~a~~T~g~tg---ADlq~  876 (952)
T KOG0735|consen  815 LIDPALLRPGRLDKLVYCP---LPDEPERLEILQVLSN------------SLLKDTDVDLECLAQKTDGFTG---ADLQS  876 (952)
T ss_pred             ccCHhhcCCCccceeeeCC---CCCcHHHHHHHHHHhh------------ccCCccccchHHHhhhcCCCch---hhHHH
Confidence            6788888  8999888888   6677777777654332            1222333 36777764321123   57777


Q ss_pred             HHcc
Q 036633          454 WMDQ  457 (550)
Q Consensus       454 ~i~~  457 (550)
                      .+..
T Consensus       877 ll~~  880 (952)
T KOG0735|consen  877 LLYN  880 (952)
T ss_pred             HHHH
Confidence            7766

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=99.21  E-value=6.9e-11  Score=131.55  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=79.1

Q ss_pred             CCeEEeccccccCHHHHHHHHHhhhhccccccccC------------CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhh
Q 036633          302 YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG------------IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGR  369 (550)
Q Consensus       302 ~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~------------g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~  369 (550)
                      +++|||||++.+++..|..|+++|++|.+. +...            ...+|   +.+|+++|...              
T Consensus       227 GGtL~LDei~~L~~~~q~~Llr~L~~~~i~-i~g~~e~~~~~~~~~~~ip~d---vrvI~a~~~~l--------------  288 (637)
T PRK13765        227 KGVLFIDEINTLDLESQQSLLTAMQEKKFP-ITGQSERSSGAMVRTEPVPCD---FIMVAAGNLDA--------------  288 (637)
T ss_pred             CcEEEEeChHhCCHHHHHHHHHHHHhCCEE-ecccccccccccCCCcceeee---eEEEEecCcCH--------------
Confidence            479999999999999999999999999333 2111            12233   44899998732              


Q ss_pred             HHHHhccCCChhhhhhcc---ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCC
Q 036633          370 VNEVTGSLFKPSLLKLLD---KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQ  446 (550)
Q Consensus       370 ~~~~l~~~f~p~ll~Rid---~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~Ga  446 (550)
                           ...++|+|.+||.   ..+.|+   .-. ++.......++..+.+.+...|- ...++++++..|.++.....|-
T Consensus       289 -----l~~~dpdL~~rfk~~~v~v~f~---~~~-~d~~e~~~~~~~~iaqe~~~~G~-l~~f~~eAVa~LI~~~~R~ag~  358 (637)
T PRK13765        289 -----LENMHPALRSRIKGYGYEVYMR---DTM-EDTPENRRKLVRFVAQEVKRDGK-IPHFDRDAVEEIIREAKRRAGR  358 (637)
T ss_pred             -----HHhhhHHHHHHhccCeEEEEcc---ccc-CCCHHHHHHHHHHHHHHhhhccC-CCCCCHHHHHHHHHHHHHHhCC
Confidence                 1345899999985   346666   333 34555556666666666655544 4579999999999854333343

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.21  E-value=2.4e-10  Score=117.59  Aligned_cols=152  Identities=19%  Similarity=0.159  Sum_probs=106.6

Q ss_pred             ccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCC---------------Cce
Q 036633          208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDND---------------NHL  272 (550)
Q Consensus       208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~---------------~~l  272 (550)
                      .--|..+.+.+..++...          +-|..+||+||+|+||+++|..+|+.+...+...               -.+
T Consensus         6 yPW~~~~~~~l~~~~~~~----------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~   75 (319)
T PRK08769          6 SPWQQRAYDQTVAALDAG----------RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL   75 (319)
T ss_pred             cccHHHHHHHHHHHHHcC----------CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence            445777888888887765          1457899999999999999999999998632110               112


Q ss_pred             eEEe-cCCCCchhhhhhHHh-----HHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          273 IHFD-MGNYTELESIKHFFD-----SLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       273 i~id-~s~~~~~~~~s~liG-----~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      ..++ ..+.... ..+.-|+     .+.+.+...|    +.|++||++|+++.+.+|.||+.||+.  .           
T Consensus        76 ~~i~~~p~~~~~-k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p-----------  141 (319)
T PRK08769         76 QLVSFIPNRTGD-KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP--S-----------  141 (319)
T ss_pred             EEEecCCCcccc-cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC--C-----------
Confidence            2221 0110000 0001123     4445444444    469999999999999999999999988  6           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE  408 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~  408 (550)
                      .+++||++|+..                     ..+.|.++||| .++.|.   +++.+++...+.
T Consensus       142 ~~~~fiL~~~~~---------------------~~lLpTIrSRC-q~i~~~---~~~~~~~~~~L~  182 (319)
T PRK08769        142 PGRYLWLISAQP---------------------ARLPATIRSRC-QRLEFK---LPPAHEALAWLL  182 (319)
T ss_pred             CCCeEEEEECCh---------------------hhCchHHHhhh-eEeeCC---CcCHHHHHHHHH
Confidence            678888888753                     35568899999 899999   899887776654

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=2.5e-10  Score=116.09  Aligned_cols=171  Identities=20%  Similarity=0.291  Sum_probs=112.5

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh---HHHHHHH-----hCCCCeEEe
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD---SLAALVK-----KRPYSVVLF  307 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG---~lt~al~-----~~p~~Vlll  307 (550)
                      +| ..+|++||||||||.+|+++|+....      +|+-+.||.+++     +++|   .++.++-     -.| ++||+
T Consensus       125 ~p~kGiLL~GPpG~GKTmlAKA~Akeaga------~fInv~~s~lt~-----KWfgE~eKlv~AvFslAsKl~P-~iIFI  192 (386)
T KOG0737|consen  125 RPPKGILLYGPPGTGKTMLAKAIAKEAGA------NFINVSVSNLTS-----KWFGEAQKLVKAVFSLASKLQP-SIIFI  192 (386)
T ss_pred             cCCccceecCCCCchHHHHHHHHHHHcCC------Ccceeeccccch-----hhHHHHHHHHHHHHhhhhhcCc-ceeeh
Confidence            45 78999999999999999999999877      999999999865     6667   3444443     355 89999


Q ss_pred             cccccc--------CH---HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc
Q 036633          308 DKIEKA--------NS---SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS  376 (550)
Q Consensus       308 DEIeka--------~~---~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~  376 (550)
                      |||+..        |.   -+-+-|.-.. +|  - .++.+     ..++|..+||.+.+                    
T Consensus       193 DEvds~L~~R~s~dHEa~a~mK~eFM~~W-DG--l-~s~~~-----~rVlVlgATNRP~D--------------------  243 (386)
T KOG0737|consen  193 DEVDSFLGQRRSTDHEATAMMKNEFMALW-DG--L-SSKDS-----ERVLVLGATNRPFD--------------------  243 (386)
T ss_pred             hhHHHHHhhcccchHHHHHHHHHHHHHHh-cc--c-cCCCC-----ceEEEEeCCCCCcc--------------------
Confidence            999854        22   2223333333 23  1 22221     23677888998743                    


Q ss_pred             CCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633          377 LFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMD  456 (550)
Q Consensus       377 ~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~  456 (550)
                       ...+++.|+...+...   -.+.+...+|+.-.|..       ..+ .=.++   +..++..+-   |..|++|+....
T Consensus       244 -lDeAiiRR~p~rf~V~---lP~~~qR~kILkviLk~-------e~~-e~~vD---~~~iA~~t~---GySGSDLkelC~  305 (386)
T KOG0737|consen  244 -LDEAIIRRLPRRFHVG---LPDAEQRRKILKVILKK-------EKL-EDDVD---LDEIAQMTE---GYSGSDLKELCR  305 (386)
T ss_pred             -HHHHHHHhCcceeeeC---CCchhhHHHHHHHHhcc-------ccc-CcccC---HHHHHHhcC---CCcHHHHHHHHH
Confidence             4567999999998888   55678888998888843       111 11122   344444322   335589998887


Q ss_pred             c---hhhHHHHHh
Q 036633          457 Q---RPSADHVID  466 (550)
Q Consensus       457 ~---~~la~~~l~  466 (550)
                      .   .|+-..+-+
T Consensus       306 ~Aa~~~ire~~~~  318 (386)
T KOG0737|consen  306 LAALRPIRELLVS  318 (386)
T ss_pred             HHhHhHHHHHHHh
Confidence            7   444444333

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=99.19  E-value=4.4e-10  Score=115.53  Aligned_cols=145  Identities=17%  Similarity=0.174  Sum_probs=104.0

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-----------------CCCce
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-----------------NDNHL  272 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-----------------~~~~l  272 (550)
                      .|....+.+..++...          +-|..+||.||.|+||+.+|+.+|+.+...+.                 ++..|
T Consensus         7 Wl~~~~~~l~~~~~~~----------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~   76 (319)
T PRK06090          7 WLVPVWQNWKAGLDAG----------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL   76 (319)
T ss_pred             cHHHHHHHHHHHHHcC----------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence            4566677777777655          13489999999999999999999999976221                 11122


Q ss_pred             eEEecCCCCchhhhhhHHh-----HHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633          273 IHFDMGNYTELESIKHFFD-----SLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       273 i~id~s~~~~~~~~s~liG-----~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      ..+.-..      ..+.|+     .+.+.+...    ++.|++||++|+++...+|.||+.+|+.  .           .
T Consensus        77 ~~i~p~~------~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p-----------~  137 (319)
T PRK06090         77 HVIKPEK------EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP--A-----------P  137 (319)
T ss_pred             EEEecCc------CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC--C-----------C
Confidence            2222110      011122     344444433    4679999999999999999999999998  6           7


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE  408 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~  408 (550)
                      +++||++|+..                     ..+-|-++||| ..+.|.   |++.+++...+.
T Consensus       138 ~t~fiL~t~~~---------------------~~lLpTI~SRC-q~~~~~---~~~~~~~~~~L~  177 (319)
T PRK06090        138 NCLFLLVTHNQ---------------------KRLLPTIVSRC-QQWVVT---PPSTAQAMQWLK  177 (319)
T ss_pred             CeEEEEEECCh---------------------hhChHHHHhcc-eeEeCC---CCCHHHHHHHHH
Confidence            78899887753                     35567799999 899999   999988877654

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.1e-10  Score=113.08  Aligned_cols=156  Identities=18%  Similarity=0.337  Sum_probs=109.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      ..|=|-+.-|+.+.+++....-     ...|+    +| ..+|++||||||||.+|++.|.....      .|..+-.. 
T Consensus       171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi----~pPKGvLmYGPPGTGKTlmARAcAaqT~a------TFLKLAgP-  239 (424)
T KOG0652|consen  171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGI----RPPKGVLMYGPPGTGKTLMARACAAQTNA------TFLKLAGP-  239 (424)
T ss_pred             cccccHHHHHHHHHHHhccccccHHHHHhcCC----CCCCceEeeCCCCCcHHHHHHHHHHhccc------hHHHhcch-
Confidence            3467888899999998865411     13344    44 68899999999999999999987544      56554432 


Q ss_pred             CCchhhhhhHHh--------HHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhh--hccccccccCCe
Q 036633          280 YTELESIKHFFD--------SLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILK--TDFNRKATRGIA  338 (550)
Q Consensus       280 ~~~~~~~s~liG--------~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld--~g~~~~l~d~g~  338 (550)
                          ..+..+||        .|.-+-.+.| ++||+||++..           +.+||...|.+|.  +|    +...  
T Consensus       240 ----QLVQMfIGdGAkLVRDAFaLAKEkaP-~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG----Fss~--  308 (424)
T KOG0652|consen  240 ----QLVQMFIGDGAKLVRDAFALAKEKAP-TIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG----FSSD--  308 (424)
T ss_pred             ----HHHhhhhcchHHHHHHHHHHhhccCC-eEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC----CCCc--
Confidence                34667777        2222223455 89999999753           4578888888874  34    2111  


Q ss_pred             EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                          ..+-+|++||.-                     ..+.|+++  +|+|.-|.|+   -.+++...+|+..+-
T Consensus       309 ----~~vKviAATNRv---------------------DiLDPALlRSGRLDRKIEfP---~Pne~aRarIlQIHs  355 (424)
T KOG0652|consen  309 ----DRVKVIAATNRV---------------------DILDPALLRSGRLDRKIEFP---HPNEEARARILQIHS  355 (424)
T ss_pred             ----cceEEEeecccc---------------------cccCHHHhhcccccccccCC---CCChHHHHHHHHHhh
Confidence                234478999973                     47789988  8999999999   778877777766543

>PRK09862 putative ATP-dependent protease; Provisional

Probab=99.18  E-value=1.1e-10  Score=126.51  Aligned_cols=169  Identities=15%  Similarity=0.109  Sum_probs=106.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec--------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM--------  277 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~--------  277 (550)
                      ..++||..+++.+.-++...             .+++|.||||+|||++++.|+..+...   .. =..+++        
T Consensus       191 ~~v~Gq~~~~~al~laa~~G-------------~~llliG~~GsGKTtLak~L~gllpp~---~g-~e~le~~~i~s~~g  253 (506)
T PRK09862        191 SDVIGQEQGKRGLEITAAGG-------------HNLLLIGPPGTGKTMLASRINGLLPDL---SN-EEALESAAILSLVN  253 (506)
T ss_pred             EEEECcHHHHhhhheeccCC-------------cEEEEECCCCCcHHHHHHHHhccCCCC---CC-cEEEecchhhhhhc
Confidence            36889998887643332211             699999999999999999999877541   10 011111        


Q ss_pred             ----------CCCCchh---hhhhHHh----HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeE
Q 036633          278 ----------GNYTELE---SIKHFFD----SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAA  339 (550)
Q Consensus       278 ----------s~~~~~~---~~s~liG----~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~  339 (550)
                                .-|...|   +...++|    .-.+.+....++|+|+||++.+++.+|+.|++.|++|.++ +... +..
T Consensus       254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~-I~r~g~~~  332 (506)
T PRK09862        254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIH-LSRTRAKI  332 (506)
T ss_pred             cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEE-EecCCcce
Confidence                      1122222   2334666    1234555666799999999999999999999999999433 3333 333


Q ss_pred             eecCCeEEEEeCCCChHHHHHh-hhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633          340 FDLTNTLIIMTSDLKDEQVYEV-MLTATYGRVNEVTGSLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       340 vd~~~~iiI~TsN~g~~~~~~~-~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~  393 (550)
                      ..-.+..+|+|+|......... .+.-+.... ..-...+++.+++|||-.+...
T Consensus       333 ~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~-~~Y~~~ls~plLDRfdL~v~v~  386 (506)
T PRK09862        333 TYPARFQLVAAMNPSPTGHYQGNHNRCTPEQT-LRYLNRLSGPFLDRFDLSLEIP  386 (506)
T ss_pred             eccCCEEEEEeecCccceecCCCCCCcCHHHH-HHHHhhCCHhHHhhccEEEEeC
Confidence            3335677999999753211110 000000111 1122467889999999888888

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=5.9e-11  Score=116.61  Aligned_cols=157  Identities=20%  Similarity=0.293  Sum_probs=110.3

Q ss_pred             cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      -..+=|-+.-++.|.+++...+-     -..|+    +| .-++++|+||||||.||+++|+....      .|+|+-.|
T Consensus       184 y~diGGle~QiQEiKEsvELPLthPE~YeemGi----kpPKGVIlyG~PGTGKTLLAKAVANqTSA------TFlRvvGs  253 (440)
T KOG0726|consen  184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGI----KPPKGVILYGEPGTGKTLLAKAVANQTSA------TFLRVVGS  253 (440)
T ss_pred             hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCC----CCCCeeEEeCCCCCchhHHHHHHhcccch------hhhhhhhH
Confidence            45677889999999998876521     02233    44 78899999999999999999987655      88888777


Q ss_pred             CCCchhhhhhHHh-------HHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccC-CeE
Q 036633          279 NYTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRG-IAA  339 (550)
Q Consensus       279 ~~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~-g~~  339 (550)
                      ++     +.+.+|       ++-.....+.-||+|+|||+...           .++|..+|.+|..-      |+ ...
T Consensus       254 eL-----iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQl------dGFdsr  322 (440)
T KOG0726|consen  254 EL-----IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL------DGFDSR  322 (440)
T ss_pred             HH-----HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhc------cCcccc
Confidence            65     444444       33333333344999999998653           47888888887421      11 111


Q ss_pred             eecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHH
Q 036633          340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREW  409 (550)
Q Consensus       340 vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~  409 (550)
                         .++-+||+||.-                     ..++|+|+  +|||.-|.|.   ..+.....+|...
T Consensus       323 ---gDvKvimATnri---------------------e~LDPaLiRPGrIDrKIef~---~pDe~TkkkIf~I  367 (440)
T KOG0726|consen  323 ---GDVKVIMATNRI---------------------ETLDPALIRPGRIDRKIEFP---LPDEKTKKKIFQI  367 (440)
T ss_pred             ---CCeEEEEecccc---------------------cccCHhhcCCCccccccccC---CCchhhhceeEEE
Confidence               334489999963                     46788888  8999999999   6666666666543

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=99.18  E-value=4e-10  Score=117.03  Aligned_cols=145  Identities=14%  Similarity=0.097  Sum_probs=104.4

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------CCCc
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------NDNH  271 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------~~~~  271 (550)
                      .+..+.+.+.+++...   +       -|..+||+||+|+||+++|.++|+.+...+.                  .+-.
T Consensus         6 Wl~~~~~~l~~~~~~~---r-------l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD   75 (334)
T PRK07993          6 WLRPDYEQLVGSYQAG---R-------GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPD   75 (334)
T ss_pred             CChHHHHHHHHHHHcC---C-------cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCC
Confidence            4566777777777765   1       3489999999999999999999999976210                  1111


Q ss_pred             eeEEecCCCCchhhhhhHHh-----HHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          272 LIHFDMGNYTELESIKHFFD-----SLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       272 li~id~s~~~~~~~~s~liG-----~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      +..+.-    +..  ...|+     .+.+.+..+    ++.|++||++|+++....|.||+.||+.  .           
T Consensus        76 ~~~i~p----~~~--~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p-----------  136 (334)
T PRK07993         76 YYTLTP----EKG--KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP--P-----------  136 (334)
T ss_pred             EEEEec----ccc--cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC--C-----------
Confidence            222211    100  01133     444444444    4569999999999999999999999998  6           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE  408 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~  408 (550)
                      .+++||++|+..                     ..+.|-++||| +.+.|.   |++.+++...+.
T Consensus       137 ~~t~fiL~t~~~---------------------~~lLpTIrSRC-q~~~~~---~~~~~~~~~~L~  177 (334)
T PRK07993        137 ENTWFFLACREP---------------------ARLLATLRSRC-RLHYLA---PPPEQYALTWLS  177 (334)
T ss_pred             CCeEEEEEECCh---------------------hhChHHHHhcc-ccccCC---CCCHHHHHHHHH
Confidence            678899888754                     35667899999 789999   999988877654

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.6e-10  Score=112.29  Aligned_cols=146  Identities=21%  Similarity=0.345  Sum_probs=107.1

Q ss_pred             cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      -..|=|..+-++++.+.+...+.     ...|+..   |..+|++||||||||.+|+++|+....      -||++=.|+
T Consensus       176 y~dvggckeqieklrevve~pll~perfv~lgidp---pkgvllygppgtgktl~aravanrtda------cfirvigse  246 (435)
T KOG0729|consen  176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDP---PKGVLLYGPPGTGKTLCARAVANRTDA------CFIRVIGSE  246 (435)
T ss_pred             cccccchHHHHHHHHHHHhccccCHHHHhhcCCCC---CCceEEeCCCCCchhHHHHHHhcccCc------eEEeehhHH
Confidence            45678889999888888766532     1344422   267899999999999999999976544      899988777


Q ss_pred             CCchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhh--ccccccccCCeE
Q 036633          280 YTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKT--DFNRKATRGIAA  339 (550)
Q Consensus       280 ~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~--g~~~~l~d~g~~  339 (550)
                      +     +.+.+|       .|-+..+.+.-++||||||+..           +.+||..+|.++..  |  .   |.   
T Consensus       247 l-----vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldg--f---dp---  313 (435)
T KOG0729|consen  247 L-----VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDG--F---DP---  313 (435)
T ss_pred             H-----HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccC--C---CC---
Confidence            5     555566       5555666677799999999854           35788888888742  3  1   11   


Q ss_pred             eecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCC
Q 036633          340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLA  395 (550)
Q Consensus       340 vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~  395 (550)
                        -.|.-++|+||.+                     ..+.|+|+  +|+|.-|.|.+|
T Consensus       314 --rgnikvlmatnrp---------------------dtldpallrpgrldrkvef~lp  348 (435)
T KOG0729|consen  314 --RGNIKVLMATNRP---------------------DTLDPALLRPGRLDRKVEFGLP  348 (435)
T ss_pred             --CCCeEEEeecCCC---------------------CCcCHhhcCCcccccceeccCC
Confidence              0344589999986                     46788888  899999999933

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=99.15  E-value=1.9e-09  Score=112.08  Aligned_cols=212  Identities=17%  Similarity=0.123  Sum_probs=140.1

Q ss_pred             hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC--eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE---Eec
Q 036633          203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL--GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH---FDM  277 (550)
Q Consensus       203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p--~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~---id~  277 (550)
                      .+..-++||+.....+.-...             .|  +.+|+.|+.|||||+++|+||..|...     ..+.   |+|
T Consensus        14 ~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~-----~~V~gc~f~c   75 (423)
T COG1239          14 LPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLPEI-----EVVIGCPFNC   75 (423)
T ss_pred             cchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCCcc-----ceecCCCCCC
Confidence            445678999998877654422             44  889999999999999999999999651     1111   111


Q ss_pred             C-------------------------------CCCchhhhhhHHh--HHHHHHHh------------CCCCeEEeccccc
Q 036633          278 G-------------------------------NYTELESIKHFFD--SLAALVKK------------RPYSVVLFDKIEK  312 (550)
Q Consensus       278 s-------------------------------~~~~~~~~s~liG--~lt~al~~------------~p~~VlllDEIek  312 (550)
                      .                               ......+..+++|  .+..+++.            ...+|+++||+.-
T Consensus        76 dP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnl  155 (423)
T COG1239          76 DPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNL  155 (423)
T ss_pred             CCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccc
Confidence            1                               1111123445777  34444442            2348999999999


Q ss_pred             cCHHHHHHHHHhhhhccccccccCCeEeec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeE
Q 036633          313 ANSSILNLLLKILKTDFNRKATRGIAAFDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV  391 (550)
Q Consensus       313 a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~  391 (550)
                      ++..+++.||.+++.|.|. ++..|..+.. .+.++|.|.|..                    ++-++|.|+.||...|.
T Consensus       156 L~d~lvd~LLd~aaeG~n~-vereGisi~hpa~fvligTmNPE--------------------eGeLrpqLlDRfg~~v~  214 (423)
T COG1239         156 LDDHLVDALLDVAAEGVND-VEREGISIRHPARFLLIGTMNPE--------------------EGELRPQLLDRFGLEVD  214 (423)
T ss_pred             ccHHHHHHHHHHHHhCCce-eeeCceeeccCccEEEEeecCcc--------------------ccccchhhHhhhcceee
Confidence            9999999999999999555 4444555433 457899999974                    36789999999988777


Q ss_pred             ecCCCCCCHHHHHHHHHHHHHH----------H-------HHHh--ccCCCccccCCHHHHHHHHhcCc-ccCCCcccHH
Q 036633          392 IDLAVPLLDTTRLLLREWACEE----------T-------KRRN--NDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGL  451 (550)
Q Consensus       392 f~~~~pL~~e~i~~I~~~~l~~----------~-------~~~l--~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L  451 (550)
                      ..  +|.+.++...|+.+.+..          +       ..+.  +..+...+.+++.+..+++..|. ...+ +.|+-
T Consensus       215 ~~--~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~-g~rad  291 (423)
T COG1239         215 TH--YPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVD-GHRAD  291 (423)
T ss_pred             cc--CCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccC-CCchh
Confidence            77  255556666666654431          1       1111  12333367899999999988776 3222 23555


Q ss_pred             HHHHc
Q 036633          452 KRWMD  456 (550)
Q Consensus       452 ~~~i~  456 (550)
                      -.+.+
T Consensus       292 i~~~r  296 (423)
T COG1239         292 IVVVR  296 (423)
T ss_pred             hHHHH
Confidence            44444

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=2.3e-10  Score=119.34  Aligned_cols=131  Identities=18%  Similarity=0.231  Sum_probs=98.7

Q ss_pred             CCC--eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEecccccc
Q 036633          236 RQL--GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKA  313 (550)
Q Consensus       236 ~~p--~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka  313 (550)
                      .+|  ...||+||||||||++..|+|++|.-      .++-+++++........+|+      ....+.|||+|.+||.+
T Consensus       231 GkawKRGYLLYGPPGTGKSS~IaAmAn~L~y------dIydLeLt~v~~n~dLr~LL------~~t~~kSIivIEDIDcs  298 (457)
T KOG0743|consen  231 GKAWKRGYLLYGPPGTGKSSFIAAMANYLNY------DIYDLELTEVKLDSDLRHLL------LATPNKSILLIEDIDCS  298 (457)
T ss_pred             CcchhccceeeCCCCCCHHHHHHHHHhhcCC------ceEEeeeccccCcHHHHHHH------HhCCCCcEEEEeecccc
Confidence            355  68899999999999999999999966      78888888877655544441      22356789999999865


Q ss_pred             C------------------HHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHh
Q 036633          314 N------------------SSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT  374 (550)
Q Consensus       314 ~------------------~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l  374 (550)
                      -                  +=.+.-||..+|.=     ... |     .--|||||||-                     
T Consensus       299 ~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGl-----wSscg-----~ERIivFTTNh---------------------  347 (457)
T KOG0743|consen  299 FDLRERRKKKKENFEGDLSRVTLSGLLNFLDGL-----WSSCG-----DERIIVFTTNH---------------------  347 (457)
T ss_pred             cccccccccccccccCCcceeehHHhhhhhccc-----cccCC-----CceEEEEecCC---------------------
Confidence            1                  11345677777532     222 1     23479999996                     


Q ss_pred             ccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633          375 GSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACE  412 (550)
Q Consensus       375 ~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~  412 (550)
                      ...++|+|+.  |+|..|.+.   -=+.+..+.++.++|.
T Consensus       348 ~EkLDPALlRpGRmDmhI~mg---yCtf~~fK~La~nYL~  384 (457)
T KOG0743|consen  348 KEKLDPALLRPGRMDMHIYMG---YCTFEAFKTLASNYLG  384 (457)
T ss_pred             hhhcCHhhcCCCcceeEEEcC---CCCHHHHHHHHHHhcC
Confidence            3688999995  999999999   8899999999998884

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=99.15  E-value=6.6e-10  Score=115.30  Aligned_cols=135  Identities=16%  Similarity=0.114  Sum_probs=94.3

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCC-C-C-----------------CceeEEecCCCC----------------
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNND-N-D-----------------NHLIHFDMGNYT----------------  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-~-~-----------------~~li~id~s~~~----------------  281 (550)
                      -|..+||+||+|+||+++|+.+|+.+...+. . .                 ..+..+......                
T Consensus        20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~   99 (342)
T PRK06964         20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD   99 (342)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence            4489999999999999999999999976220 0 0                 112222111000                


Q ss_pred             ch----hhhhhHHh-----HHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633          282 EL----ESIKHFFD-----SLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLII  348 (550)
Q Consensus       282 ~~----~~~s~liG-----~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI  348 (550)
                      +.    ...+..|+     .+.+.+...    ++.|++||++|+++++..|.||+.||+.  .           .+++||
T Consensus       100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP--p-----------~~t~fi  166 (342)
T PRK06964        100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEP--P-----------PGTVFL  166 (342)
T ss_pred             cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCC--C-----------cCcEEE
Confidence            00    00011233     344444433    3569999999999999999999999988  6           678888


Q ss_pred             EeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHH
Q 036633          349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW  409 (550)
Q Consensus       349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~  409 (550)
                      ++|+..                     ..+.|.++||| +.+.|.   |++.+++...+..
T Consensus       167 L~t~~~---------------------~~LLpTI~SRc-q~i~~~---~~~~~~~~~~L~~  202 (342)
T PRK06964        167 LVSARI---------------------DRLLPTILSRC-RQFPMT---VPAPEAAAAWLAA  202 (342)
T ss_pred             EEECCh---------------------hhCcHHHHhcC-EEEEec---CCCHHHHHHHHHH
Confidence            887753                     46778899999 899999   9999888877654

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=3.2e-10  Score=123.66  Aligned_cols=159  Identities=20%  Similarity=0.275  Sum_probs=110.4

Q ss_pred             cCcccCcHHHHHHHHHHHhcch--hhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633          205 KKRVFGQNDAIDVIFEALTKPK--AAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE  282 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~--~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~  282 (550)
                      -..|.|.++|+..+.+.+.=.+  .++..+-. .-|.-++++||||||||.+|+++|-....      ||..+.-|+|. 
T Consensus       149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~V------PFf~iSGS~FV-  220 (596)
T COG0465         149 FADVAGVDEAKEELSELVDFLKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGV------PFFSISGSDFV-  220 (596)
T ss_pred             hhhhcCcHHHHHHHHHHHHHHhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCC------Cceeccchhhh-
Confidence            3568999999988777664220  00111111 34578899999999999999999987666      99999988874 


Q ss_pred             hhhhhhHHh--------HHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEe
Q 036633          283 LESIKHFFD--------SLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAF  340 (550)
Q Consensus       283 ~~~~s~liG--------~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~v  340 (550)
                          ..++|        .+.++-+..| |||||||||....              ..+|.||.-+| |    +..     
T Consensus       221 ----emfVGvGAsRVRdLF~qAkk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD-G----F~~-----  285 (596)
T COG0465         221 ----EMFVGVGASRVRDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD-G----FGG-----  285 (596)
T ss_pred             ----hhhcCCCcHHHHHHHHHhhccCC-CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc-c----CCC-----
Confidence                44455        4566666677 9999999986542              24555555443 3    111     


Q ss_pred             ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                       -..++++.+||..                     ...+|+++  .|+|..|...   ..+-...++|++-++
T Consensus       286 -~~gviviaaTNRp---------------------dVlD~ALlRpgRFDRqI~V~---~PDi~gRe~IlkvH~  333 (596)
T COG0465         286 -NEGVIVIAATNRP---------------------DVLDPALLRPGRFDRQILVE---LPDIKGREQILKVHA  333 (596)
T ss_pred             -CCceEEEecCCCc---------------------ccchHhhcCCCCcceeeecC---CcchhhHHHHHHHHh
Confidence             1346788888875                     45677777  8999999988   666677777777555

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.8e-10  Score=114.37  Aligned_cols=188  Identities=20%  Similarity=0.255  Sum_probs=118.5

Q ss_pred             CCccCHHHHHH---HHHHHhCCCCCCCCCchHHHHHHHhhh-----hcCcccCcHHHHHHHHHHHhcchh-----hhcCC
Q 036633          166 KLAVDVEEIAE---VASKLTGIPASWFCTKPEERYMRVQGR-----LKKRVFGQNDAIDVIFEALTKPKA-----AKKGL  232 (550)
Q Consensus       166 ~~~v~~~~i~~---v~~~~~gip~~~~~~~~~~~l~~l~~~-----L~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl  232 (550)
                      ...++..+|+.   ++-..|-.|.......+....-++...     --+.+-|--.-+..+.+.+..++.     -+.|+
T Consensus        84 ~~~~D~~~i~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI  163 (388)
T KOG0651|consen   84 RRSVDKEKIARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGI  163 (388)
T ss_pred             ccccchhhhccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCC
Confidence            45566666653   334455566666666655533222211     113355555556665555544311     12333


Q ss_pred             CCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh--hhhhHHh-HHHHHHHhCCCCeEEec
Q 036633          233 SSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE--SIKHFFD-SLAALVKKRPYSVVLFD  308 (550)
Q Consensus       233 ~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~--~~s~liG-~lt~al~~~p~~VlllD  308 (550)
                          +| ..+++|||||+|||.+|+++|..+..      +|+.+-.|++.+..  ..+++|- .+..|-...| ||+|+|
T Consensus       164 ----k~Pkg~ll~GppGtGKTlla~~Vaa~mg~------nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~p-ciifmd  232 (388)
T KOG0651|consen  164 ----KPPKGLLLYGPPGTGKTLLARAVAATMGV------NFLKVVSSALVDKYIGESARLIRDMFRYAREVIP-CIIFMD  232 (388)
T ss_pred             ----CCCceeEEeCCCCCchhHHHHHHHHhcCC------ceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCc-eEEeeh
Confidence                44 79999999999999999999999988      89998888874332  1234443 3333433455 999999


Q ss_pred             cccc-----------cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccC
Q 036633          309 KIEK-----------ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSL  377 (550)
Q Consensus       309 EIek-----------a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~  377 (550)
                      |||.           ++..+|..|..+++.=  . --|.     ...+-+|||+|..                     ..
T Consensus       233 eiDAigGRr~se~Ts~dreiqrTLMeLlnqm--d-gfd~-----l~rVk~ImatNrp---------------------dt  283 (388)
T KOG0651|consen  233 EIDAIGGRRFSEGTSSDREIQRTLMELLNQM--D-GFDT-----LHRVKTIMATNRP---------------------DT  283 (388)
T ss_pred             hhhhhccEEeccccchhHHHHHHHHHHHHhh--c-cchh-----cccccEEEecCCc---------------------cc
Confidence            9984           3568999999988732  2 1122     1334589999976                     35


Q ss_pred             CChhhh--hhccceeEec
Q 036633          378 FKPSLL--KLLDKLVVID  393 (550)
Q Consensus       378 f~p~ll--~Rid~ii~f~  393 (550)
                      +.|+|+  +|+|..+..+
T Consensus       284 LdpaLlRpGRldrk~~iP  301 (388)
T KOG0651|consen  284 LDPALLRPGRLDRKVEIP  301 (388)
T ss_pred             cchhhcCCccccceeccC
Confidence            667777  8898777665

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.12  E-value=8.9e-09  Score=103.67  Aligned_cols=177  Identities=15%  Similarity=0.116  Sum_probs=105.5

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe--cCCCCchhh---hhhHHh-------------HHHH----
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD--MGNYTELES---IKHFFD-------------SLAA----  295 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id--~s~~~~~~~---~s~liG-------------~lt~----  295 (550)
                      ++.++++||+|+|||++++.++..+..   .  .+....  .+.+.....   +...+|             .+..    
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~---~--~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~  117 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQ---E--RVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE  117 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCC---C--CeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999988753   1  222211  111111100   111111             2222    


Q ss_pred             HHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc
Q 036633          296 LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG  375 (550)
Q Consensus       296 al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~  375 (550)
                      ........||++||++.+++..++.|..+.+-.     .+++     ..+.|+++.....               ...+.
T Consensus       118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~-----~~~~-----~~~~vvl~g~~~~---------------~~~l~  172 (269)
T TIGR03015       118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQ-----TDNA-----KLLQIFLVGQPEF---------------RETLQ  172 (269)
T ss_pred             HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcc-----cCCC-----CeEEEEEcCCHHH---------------HHHHc
Confidence            222344469999999999998888776544311     1111     2234566654321               11111


Q ss_pred             cCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHH
Q 036633          376 SLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWM  455 (550)
Q Consensus       376 ~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i  455 (550)
                      ..-...+.+|+...+.+.   ||+.+++..++...+...     .... ...+++++++.|.+.+-   | +.|.+....
T Consensus       173 ~~~~~~l~~r~~~~~~l~---~l~~~e~~~~l~~~l~~~-----g~~~-~~~~~~~~~~~i~~~s~---G-~p~~i~~l~  239 (269)
T TIGR03015       173 SPQLQQLRQRIIASCHLG---PLDREETREYIEHRLERA-----GNRD-APVFSEGAFDAIHRFSR---G-IPRLINILC  239 (269)
T ss_pred             CchhHHHHhheeeeeeCC---CCCHHHHHHHHHHHHHHc-----CCCC-CCCcCHHHHHHHHHHcC---C-cccHHHHHH
Confidence            111235778887788899   999999999988887532     1111 24689999999998653   5 667666665


Q ss_pred             cc
Q 036633          456 DQ  457 (550)
Q Consensus       456 ~~  457 (550)
                      ..
T Consensus       240 ~~  241 (269)
T TIGR03015       240 DR  241 (269)
T ss_pred             HH
Confidence            54

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK12377 putative replication protein; Provisional

Probab=99.11  E-value=3.1e-10  Score=112.87  Aligned_cols=144  Identities=17%  Similarity=0.218  Sum_probs=92.9

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF  289 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l  289 (550)
                      ||..|+..+...+...   .      ....+++|+||||||||+||.+|++.+..   ....++.++++++......+.-
T Consensus        82 ~~~~a~~~a~~~a~~~---~------~~~~~l~l~G~~GtGKThLa~AIa~~l~~---~g~~v~~i~~~~l~~~l~~~~~  149 (248)
T PRK12377         82 GQRYALSQAKSIADEL---M------TGCTNFVFSGKPGTGKNHLAAAIGNRLLA---KGRSVIVVTVPDVMSRLHESYD  149 (248)
T ss_pred             hHHHHHHHHHHHHHHH---H------hcCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEHHHHHHHHHHHHh
Confidence            6666666555544433   1      12268999999999999999999999976   4456677776655432211100


Q ss_pred             Hh-HHHHHHHh-CCCCeEEeccc--cccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhh
Q 036633          290 FD-SLAALVKK-RPYSVVLFDKI--EKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTA  365 (550)
Q Consensus       290 iG-~lt~al~~-~p~~VlllDEI--eka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~  365 (550)
                      -+ ...+.++. ....+|+|||+  +..++..++.|+++++..  .  .        ++.-+|+|||.+.+.+.      
T Consensus       150 ~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R--~--~--------~~~ptiitSNl~~~~l~------  211 (248)
T PRK12377        150 NGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRR--T--A--------SMRSVGMLTNLNHEAMS------  211 (248)
T ss_pred             ccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHH--H--h--------cCCCEEEEcCCCHHHHH------
Confidence            01 11112221 23469999999  667888999999999876  3  1        11226889999876653      


Q ss_pred             hHhhHHHHhccCCChhhhhhcc----ceeEec
Q 036633          366 TYGRVNEVTGSLFKPSLLKLLD----KLVVID  393 (550)
Q Consensus       366 ~~~~~~~~l~~~f~p~ll~Rid----~ii~f~  393 (550)
                                ..|+..+++|+-    ..|.|.
T Consensus       212 ----------~~~~~ri~dRl~~~~~~~v~~~  233 (248)
T PRK12377        212 ----------TLLGERVMDRMTMNGGRWVNFN  233 (248)
T ss_pred             ----------HHhhHHHHHHHhhCCCeEEEeC
Confidence                      356667888883    247776

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=99.10  E-value=5.2e-09  Score=109.96  Aligned_cols=184  Identities=19%  Similarity=0.253  Sum_probs=123.0

Q ss_pred             hhcCcccCcHHHH-HHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCC--ceeEEecC
Q 036633          203 RLKKRVFGQNDAI-DVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDN--HLIHFDMG  278 (550)
Q Consensus       203 ~L~~~viGQ~~ai-~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~--~li~id~s  278 (550)
                      .+...|+|-.... ..++..+...         |.++ .+++|+||+|.|||.|+++++.....   ...  .++.+...
T Consensus        85 tFdnFv~g~~N~~A~aa~~~va~~---------~g~~~nplfi~G~~GlGKTHLl~Aign~~~~---~~~~a~v~y~~se  152 (408)
T COG0593          85 TFDNFVVGPSNRLAYAAAKAVAEN---------PGGAYNPLFIYGGVGLGKTHLLQAIGNEALA---NGPNARVVYLTSE  152 (408)
T ss_pred             chhheeeCCchHHHHHHHHHHHhc---------cCCcCCcEEEECCCCCCHHHHHHHHHHHHHh---hCCCceEEeccHH
Confidence            3456688876544 3333444433         3346 79999999999999999999998876   332  24444433


Q ss_pred             CCCchhhhhhHHhHHHHHHHh---------CCCCeEEeccccccCH--HHHHHHHHh----hhhccccccccCCeEeecC
Q 036633          279 NYTELESIKHFFDSLAALVKK---------RPYSVVLFDKIEKANS--SILNLLLKI----LKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       279 ~~~~~~~~s~liG~lt~al~~---------~p~~VlllDEIeka~~--~v~~~Ll~~----ld~g~~~~l~d~g~~vd~~  343 (550)
                      .|         +..+..+++.         ....+++||+|+-...  ..+..|..+    .++|  .            
T Consensus       153 ~f---------~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~--k------------  209 (408)
T COG0593         153 DF---------TNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG--K------------  209 (408)
T ss_pred             HH---------HHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC--C------------
Confidence            33         2222333332         1346999999987543  334444444    4444  2            


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc--eeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK--LVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~--ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                        -||+||...+..+                 ..+.|.|.+|+..  ++...   |++.+....|+.....       ..
T Consensus       210 --qIvltsdr~P~~l-----------------~~~~~rL~SR~~~Gl~~~I~---~Pd~e~r~aiL~kka~-------~~  260 (408)
T COG0593         210 --QIVLTSDRPPKEL-----------------NGLEDRLRSRLEWGLVVEIE---PPDDETRLAILRKKAE-------DR  260 (408)
T ss_pred             --EEEEEcCCCchhh-----------------ccccHHHHHHHhceeEEeeC---CCCHHHHHHHHHHHHH-------hc
Confidence              3788888766554                 4567889999976  45566   9999999999887443       25


Q ss_pred             CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++   .+++++..+|+..-.   . |+|.|..++++
T Consensus       261 ~~---~i~~ev~~~la~~~~---~-nvReLegaL~~  289 (408)
T COG0593         261 GI---EIPDEVLEFLAKRLD---R-NVRELEGALNR  289 (408)
T ss_pred             CC---CCCHHHHHHHHHHhh---c-cHHHHHHHHHH
Confidence            44   899999999998543   3 88999999976

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.08  E-value=3.1e-09  Score=104.18  Aligned_cols=163  Identities=13%  Similarity=0.186  Sum_probs=115.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCC-------------CCCC----------ceeEEecCCCC--chhhhhhHHhHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNN-------------DNDN----------HLIHFDMGNYT--ELESIKHFFDSL  293 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~-------------~~~~----------~li~id~s~~~--~~~~~s~liG~l  293 (550)
                      .+++|+||+|+||.+.+.+|-+.+||.|             .+.+          ..+.++-|++.  +..-+..++...
T Consensus        35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev  114 (351)
T KOG2035|consen   35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV  114 (351)
T ss_pred             CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence            5999999999999999999999999944             1111          11122222211  111122222211


Q ss_pred             -----HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHh
Q 036633          294 -----AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYG  368 (550)
Q Consensus       294 -----t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~  368 (550)
                           .+.-.++++.||+|-|+|++..+.|..|.+.++.-  .           +|+.+|+.+|.-+             
T Consensus       115 AQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY--s-----------~~~RlIl~cns~S-------------  168 (351)
T KOG2035|consen  115 AQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKY--S-----------SNCRLILVCNSTS-------------  168 (351)
T ss_pred             HhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHH--h-----------cCceEEEEecCcc-------------
Confidence                 11112467899999999999999999999999977  5           6788999999754             


Q ss_pred             hHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcc
Q 036633          369 RVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNG  448 (550)
Q Consensus       369 ~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~  448 (550)
                              ..-+++.+|| -.|..+   ..+.+|+..++...+.+       .|+   .+..+.+..|++.+.       
T Consensus       169 --------riIepIrSRC-l~iRvp---aps~eeI~~vl~~v~~k-------E~l---~lp~~~l~rIa~kS~-------  219 (351)
T KOG2035|consen  169 --------RIIEPIRSRC-LFIRVP---APSDEEITSVLSKVLKK-------EGL---QLPKELLKRIAEKSN-------  219 (351)
T ss_pred             --------cchhHHhhhe-eEEeCC---CCCHHHHHHHHHHHHHH-------hcc---cCcHHHHHHHHHHhc-------
Confidence                    3446699999 677777   88999999999888854       544   677999999998542       


Q ss_pred             cHHHHHHc
Q 036633          449 EGLKRWMD  456 (550)
Q Consensus       449 R~L~~~i~  456 (550)
                      |.|++.+=
T Consensus       220 ~nLRrAll  227 (351)
T KOG2035|consen  220 RNLRRALL  227 (351)
T ss_pred             ccHHHHHH
Confidence            55667664

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=3.2e-09  Score=111.47  Aligned_cols=191  Identities=16%  Similarity=0.152  Sum_probs=130.9

Q ss_pred             hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCc-eeEEecCCCC
Q 036633          203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNH-LIHFDMGNYT  281 (550)
Q Consensus       203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~-li~id~s~~~  281 (550)
                      .+.+.+.+.+.-+.++...+.-.   .    +...|.+++++||||||||.+++.+.+.+...  .... .+.+||-.+.
T Consensus        14 ~iP~~l~~Re~ei~~l~~~l~~~---~----~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~--~~~~~~~yINc~~~~   84 (366)
T COG1474          14 YIPEELPHREEEINQLASFLAPA---L----RGERPSNIIIYGPTGTGKTATVKFVMEELEES--SANVEVVYINCLELR   84 (366)
T ss_pred             CCcccccccHHHHHHHHHHHHHH---h----cCCCCccEEEECCCCCCHhHHHHHHHHHHHhh--hccCceEEEeeeeCC
Confidence            44556888888888888887766   2    23367679999999999999999999999761  2223 7999999998


Q ss_pred             chhhhh-hHH---------h--------HHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          282 ELESIK-HFF---------D--------SLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       282 ~~~~~s-~li---------G--------~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      ....+- .++         |        .+.+.+.. ...-||+|||++.+-..-.+.|+.++.-+  . -   +    -
T Consensus        85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~--~-~---~----~  154 (366)
T COG1474          85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAP--G-E---N----K  154 (366)
T ss_pred             CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhc--c-c---c----c
Confidence            765532 111         1        33344443 34458999999988776557888777554  3 1   1    2


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc-ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD-KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid-~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                      .++.+|+.+|--.-                  ...|.|-+.+++. ..|.|+   |++.+++..|+....+.-   +  .
T Consensus       155 ~~v~vi~i~n~~~~------------------~~~ld~rv~s~l~~~~I~F~---pY~a~el~~Il~~R~~~~---~--~  208 (366)
T COG1474         155 VKVSIIAVSNDDKF------------------LDYLDPRVKSSLGPSEIVFP---PYTAEELYDILRERVEEG---F--S  208 (366)
T ss_pred             eeEEEEEEeccHHH------------------HHHhhhhhhhccCcceeeeC---CCCHHHHHHHHHHHHHhh---c--c
Confidence            44567787774210                  1344555555552 358999   999999999999877531   1  1


Q ss_pred             CCccccCCHHHHHHHHhcCc
Q 036633          422 KAVIVCPSTSALVHIASNAA  441 (550)
Q Consensus       422 ~~~~l~~~~~a~~~L~~~~~  441 (550)
                         .-.+++++++.++....
T Consensus       209 ---~~~~~~~vl~lia~~~a  225 (366)
T COG1474         209 ---AGVIDDDVLKLIAALVA  225 (366)
T ss_pred             ---CCCcCccHHHHHHHHHH
Confidence               23589999999987544

>TIGR00602 rad24 checkpoint protein rad24

Probab=99.06  E-value=2.7e-09  Score=118.59  Aligned_cols=210  Identities=11%  Similarity=0.184  Sum_probs=116.2

Q ss_pred             HhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE----
Q 036633          200 VQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH----  274 (550)
Q Consensus       200 l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~----  274 (550)
                      ....--..++||++.+..|..++...   ..    +..| ..++|+||||+|||++++++|+.+..      .++.    
T Consensus        78 yrP~~ldel~~~~~ki~~l~~~l~~~---~~----~~~~~~illL~GP~GsGKTTl~~~la~~l~~------~~~Ew~np  144 (637)
T TIGR00602        78 YKPETQHELAVHKKKIEEVETWLKAQ---VL----ENAPKRILLITGPSGCGKSTTIKILSKELGI------QVQEWSNP  144 (637)
T ss_pred             hCCCCHHHhcCcHHHHHHHHHHHHhc---cc----ccCCCcEEEEECCCCCCHHHHHHHHHHHhhh------HHHHHhhh
Confidence            33344467999999999988888755   21    2344 57999999999999999999998754      2111    


Q ss_pred             EecCCCCchh--------------hhhhHHhHHHHHHH----------hCCCCeEEecccc----ccCHHHHHHHH-Hhh
Q 036633          275 FDMGNYTELE--------------SIKHFFDSLAALVK----------KRPYSVVLFDKIE----KANSSILNLLL-KIL  325 (550)
Q Consensus       275 id~s~~~~~~--------------~~s~liG~lt~al~----------~~p~~VlllDEIe----ka~~~v~~~Ll-~~l  325 (550)
                      ++|......+              +...-+..+.....          .....||||||++    .....++++|+ ...
T Consensus       145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~  224 (637)
T TIGR00602       145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYV  224 (637)
T ss_pred             hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhh
Confidence            1111111100              11111111111111          1234699999994    44445555555 455


Q ss_pred             hhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHH
Q 036633          326 KTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTR  403 (550)
Q Consensus       326 d~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i  403 (550)
                      +.|  + +           .+|+++|......-+.       ....-.....++|++++  |+ .+|.|+   |++...+
T Consensus       225 e~~--~-~-----------pLI~I~TE~~~~~~~~-------~~~~f~~~~lL~~eLls~~rv-~~I~Fn---Pia~t~l  279 (637)
T TIGR00602       225 SIG--R-C-----------PLVFIITESLEGDNNQ-------RRLLFPAETIMNKEILEEPRV-SNISFN---PIAPTIM  279 (637)
T ss_pred             cCC--C-c-----------eEEEEecCCccccccc-------cccccchhcccCHhHhcccce-eEEEeC---CCCHHHH
Confidence            555  3 1           2334344221100000       00000001223489997  67 589999   9999999


Q ss_pred             HHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          404 LLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       404 ~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .+.+...+..-...+...+   ...++++++.|+..+-   |    ++|++|..
T Consensus       280 ~K~L~rIl~~E~~~~~~~~---~~p~~~~l~~I~~~s~---G----DiRsAIn~  323 (637)
T TIGR00602       280 KKFLNRIVTIEAKKNGEKI---KVPKKTSVELLCQGCS---G----DIRSAINS  323 (637)
T ss_pred             HHHHHHHHHhhhhcccccc---ccCCHHHHHHHHHhCC---C----hHHHHHHH
Confidence            9999988865322211111   1236788888887432   3    35566653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=99.04  E-value=3.1e-09  Score=110.00  Aligned_cols=134  Identities=18%  Similarity=0.184  Sum_probs=91.6

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCC-------------------CCCCceeEEecCCCC-chhhhhhHHh-----
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNN-------------------DNDNHLIHFDMGNYT-ELESIKHFFD-----  291 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-------------------~~~~~li~id~s~~~-~~~~~s~liG-----  291 (550)
                      -|.++||+||+|+|||++|+.+|+.+....                   .++..|+.++...-. +...-+.-|+     
T Consensus        20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR   99 (325)
T PRK08699         20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVR   99 (325)
T ss_pred             cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHH
Confidence            448999999999999999999999987411                   112234445432100 0000001122     


Q ss_pred             HHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhH
Q 036633          292 SLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATY  367 (550)
Q Consensus       292 ~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~  367 (550)
                      .+.+.+..+|    +.|+++|+++.+++..++.|++.+++.  .           .+++||++|+..             
T Consensus       100 ~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep--~-----------~~~~~Ilvth~~-------------  153 (325)
T PRK08699        100 EIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP--P-----------PQVVFLLVSHAA-------------  153 (325)
T ss_pred             HHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhC--c-----------CCCEEEEEeCCh-------------
Confidence            4445555444    569999999999999999999999987  4           345566666542             


Q ss_pred             hhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633          368 GRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE  408 (550)
Q Consensus       368 ~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~  408 (550)
                              ....|.+.+|| .++.|.   |++.+++...+.
T Consensus       154 --------~~ll~ti~SRc-~~~~~~---~~~~~~~~~~L~  182 (325)
T PRK08699        154 --------DKVLPTIKSRC-RKMVLP---APSHEEALAYLR  182 (325)
T ss_pred             --------HhChHHHHHHh-hhhcCC---CCCHHHHHHHHH
Confidence                    24557799999 899999   999988776654

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.04  E-value=4.8e-09  Score=114.36  Aligned_cols=173  Identities=18%  Similarity=0.323  Sum_probs=115.0

Q ss_pred             CCCcCCC--eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhH--HHHHHH---hCCCCe
Q 036633          232 LSSRRQL--GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS--LAALVK---KRPYSV  304 (550)
Q Consensus       232 l~~~~~p--~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~--lt~al~---~~p~~V  304 (550)
                      +....+|  ..+||+||||-|||+||..||+..+-      .++.||.|+-...+.+..-|-.  .+..+-   .+| ..
T Consensus       318 ~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGY------sVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP-~C  390 (877)
T KOG1969|consen  318 LDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGY------SVVEINASDERTAPMVKEKIENAVQNHSVLDADSRP-VC  390 (877)
T ss_pred             cCccCCCccceEEeecCCCCChhHHHHHHHHhcCc------eEEEecccccccHHHHHHHHHHHHhhccccccCCCc-ce
Confidence            3344567  89999999999999999999999766      8999999988777766543331  111111   356 57


Q ss_pred             EEeccccccCHHHHHHHHHhhhhccccccccC--CeEe---------ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHH
Q 036633          305 VLFDKIEKANSSILNLLLKILKTDFNRKATRG--IAAF---------DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEV  373 (550)
Q Consensus       305 lllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--g~~v---------d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~  373 (550)
                      |++||||-+++...+.++.++...  ....-+  +...         -+.+- |||.||                     
T Consensus       391 LViDEIDGa~~~~Vdvilslv~a~--~k~~~Gkq~~~~~~rkkkr~~~L~RP-IICICN---------------------  446 (877)
T KOG1969|consen  391 LVIDEIDGAPRAAVDVILSLVKAT--NKQATGKQAKKDKKRKKKRSKLLTRP-IICICN---------------------  446 (877)
T ss_pred             EEEecccCCcHHHHHHHHHHHHhh--cchhhcCcccchhhhhhhccccccCC-EEEEec---------------------
Confidence            899999999999999999998732  101111  1100         12222 556666                     


Q ss_pred             hccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHH
Q 036633          374 TGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGL  451 (550)
Q Consensus       374 l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L  451 (550)
                        ..|-|+|.  .-+-.+|.|.   |.+...+.+-++..+       ...|+   .++..++..|++.+.       -++
T Consensus       447 --dLYaPaLR~Lr~~A~ii~f~---~p~~s~Lv~RL~~IC-------~rE~m---r~d~~aL~~L~el~~-------~DI  504 (877)
T KOG1969|consen  447 --DLYAPALRPLRPFAEIIAFV---PPSQSRLVERLNEIC-------HRENM---RADSKALNALCELTQ-------NDI  504 (877)
T ss_pred             --CccchhhhhcccceEEEEec---CCChhHHHHHHHHHH-------hhhcC---CCCHHHHHHHHHHhc-------chH
Confidence              35566654  3344799999   667666653333333       33555   889999999998653       346


Q ss_pred             HHHHcc
Q 036633          452 KRWMDQ  457 (550)
Q Consensus       452 ~~~i~~  457 (550)
                      +.+|+.
T Consensus       505 RsCINt  510 (877)
T KOG1969|consen  505 RSCINT  510 (877)
T ss_pred             HHHHHH
Confidence            667764

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=99.02  E-value=4.8e-09  Score=106.04  Aligned_cols=130  Identities=13%  Similarity=0.240  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----------CCCCceeEEecCCCCc
Q 036633          213 DAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----------DNDNHLIHFDMGNYTE  282 (550)
Q Consensus       213 ~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----------~~~~~li~id~s~~~~  282 (550)
                      .+.+.+..++...          .-|..+||+||+|+||+.+|..+|+.++..+          ..+..+..+.-..-  
T Consensus         4 ~~~~~L~~~i~~~----------rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~--   71 (290)
T PRK05917          4 AAWEALIQRVRDQ----------KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK--   71 (290)
T ss_pred             HHHHHHHHHHHcC----------CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC--
Confidence            3455666666654          1348999999999999999999999998621          01112222211000  


Q ss_pred             hhhhhhHHh-----HHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCC
Q 036633          283 LESIKHFFD-----SLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       283 ~~~~s~liG-----~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~  353 (550)
                          +..++     .+.+.+..+|    +.|++||++|+++++.+|.||+.||+.  .           .+++||++|+.
T Consensus        72 ----~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEP--p-----------~~~~fiL~~~~  134 (290)
T PRK05917         72 ----GRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDP--P-----------QHGVIILTSAK  134 (290)
T ss_pred             ----CCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcC--C-----------CCeEEEEEeCC
Confidence                01122     3444444444    569999999999999999999999998  6           67888888775


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~  393 (550)
                      .                     ..+.|.++||| ..+.|.
T Consensus       135 ~---------------------~~ll~TI~SRc-q~~~~~  152 (290)
T PRK05917        135 P---------------------QRLPPTIRSRS-LSIHIP  152 (290)
T ss_pred             h---------------------hhCcHHHHhcc-eEEEcc
Confidence            3                     46678899999 899999

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.01  E-value=1.3e-08  Score=99.70  Aligned_cols=201  Identities=20%  Similarity=0.254  Sum_probs=129.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      +.++|-+..++.+.......   -.|     .| .++|++|+.|||||++++++...+..   ..=.+|.++-..+.   
T Consensus        27 ~~L~Gie~Qk~~l~~Nt~~F---l~G-----~pannvLL~G~rGtGKSSlVkall~~y~~---~GLRlIev~k~~L~---   92 (249)
T PF05673_consen   27 DDLIGIERQKEALIENTEQF---LQG-----LPANNVLLWGARGTGKSSLVKALLNEYAD---QGLRLIEVSKEDLG---   92 (249)
T ss_pred             HHhcCHHHHHHHHHHHHHHH---HcC-----CCCcceEEecCCCCCHHHHHHHHHHHHhh---cCceEEEECHHHhc---
Confidence            45788888888888877766   333     46 89999999999999999999998866   33345555433221   


Q ss_pred             hhhhHHhHHHHHHHhCCCC-eEEeccccc-cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCC---hHHHH
Q 036633          285 SIKHFFDSLAALVKKRPYS-VVLFDKIEK-ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLK---DEQVY  359 (550)
Q Consensus       285 ~~s~liG~lt~al~~~p~~-VlllDEIek-a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g---~~~~~  359 (550)
                      .    +..+.+.++..|+. |||+|++-= ....-...|-.+||.|    +.     ---.|++|.+|||.-   .+...
T Consensus        93 ~----l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGg----le-----~~P~NvliyATSNRRHLv~E~~~  159 (249)
T PF05673_consen   93 D----LPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGG----LE-----ARPDNVLIYATSNRRHLVPESFS  159 (249)
T ss_pred             c----HHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCc----cc-----cCCCcEEEEEecchhhccchhhh
Confidence            1    22566777777754 889998742 2344567777777766    21     124789999999962   12111


Q ss_pred             Hhhh---hh--hHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCH----
Q 036633          360 EVML---TA--TYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPST----  430 (550)
Q Consensus       360 ~~~~---~~--~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~----  430 (550)
                      +...   ++  ..+.+.+.+      .|..||.-.|.|.   |++.++..+|+...+.+       .|+   .+++    
T Consensus       160 d~~~~~~~eih~~d~~eEkl------SLsDRFGL~l~F~---~~~q~~YL~IV~~~~~~-------~g~---~~~~e~l~  220 (249)
T PF05673_consen  160 DREDIQDDEIHPSDTIEEKL------SLSDRFGLWLSFY---PPDQEEYLAIVRHYAER-------YGL---ELDEEELR  220 (249)
T ss_pred             hccCCCccccCcchHHHHHH------hHHHhCCcEEEec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHH
Confidence            1100   00  012222222      4789999999999   99999999999998854       555   5553    


Q ss_pred             -HHHHHHHhcCcccCCCcccHHHHHHc
Q 036633          431 -SALVHIASNAARKYGQNGEGLKRWMD  456 (550)
Q Consensus       431 -~a~~~L~~~~~~~~GaN~R~L~~~i~  456 (550)
                       +|+.|-..++    |-+||--+.++.
T Consensus       221 ~~Al~wa~~rg----~RSGRtA~QF~~  243 (249)
T PF05673_consen  221 QEALQWALRRG----GRSGRTARQFID  243 (249)
T ss_pred             HHHHHHHHHcC----CCCHHHHHHHHH
Confidence             4444444332    335576665554

>PRK06526 transposase; Provisional

Probab=99.01  E-value=5e-10  Score=111.97  Aligned_cols=107  Identities=18%  Similarity=0.261  Sum_probs=72.3

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHh-CCCCeEEecccccc--C
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKK-RPYSVVLFDKIEKA--N  314 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~-~p~~VlllDEIeka--~  314 (550)
                      +.+++|+||||||||++|.+|+..+..   .......+.++++.+....+...|.+...+.. ..+.+|+|||++..  +
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~---~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~  174 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQ---AGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFE  174 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHH---CCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCC
Confidence            358999999999999999999988765   33344445555443333222222233333332 34579999999976  4


Q ss_pred             HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          315 SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       315 ~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      +..++.|+++++..  .           .+.-+|+|||.+......
T Consensus       175 ~~~~~~L~~li~~r--~-----------~~~s~IitSn~~~~~w~~  207 (254)
T PRK06526        175 PEAANLFFQLVSSR--Y-----------ERASLIVTSNKPFGRWGE  207 (254)
T ss_pred             HHHHHHHHHHHHHH--H-----------hcCCEEEEcCCCHHHHHH
Confidence            78888999999765  3           122378999998877654

>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=4.9e-09  Score=110.20  Aligned_cols=198  Identities=21%  Similarity=0.224  Sum_probs=124.5

Q ss_pred             HHhhhhcCcccCcHHHHHHHHHHHhcchh---hhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE
Q 036633          199 RVQGRLKKRVFGQNDAIDVIFEALTKPKA---AKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH  274 (550)
Q Consensus       199 ~l~~~L~~~viGQ~~ai~~i~~~l~~~~~---~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~  274 (550)
                      +.....-..+-|.+.|.+.+..++.....   ...|+   ..| ..+|+.||||+|||.++++||-.+..      .|.-
T Consensus       146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl---r~p~rglLLfGPpgtGKtmL~~aiAsE~~a------tff~  216 (428)
T KOG0740|consen  146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL---REPVRGLLLFGPPGTGKTMLAKAIATESGA------TFFN  216 (428)
T ss_pred             cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc---ccccchhheecCCCCchHHHHHHHHhhhcc------eEee
Confidence            33444556789999999998888876521   12233   345 79999999999999999999988766      6665


Q ss_pred             EecCCCCchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc-----------CHHHHH-HHHHhhhhcccccccc
Q 036633          275 FDMGNYTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA-----------NSSILN-LLLKILKTDFNRKATR  335 (550)
Q Consensus       275 id~s~~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka-----------~~~v~~-~Ll~~ld~g~~~~l~d  335 (550)
                      +..|.+     .++.+|       .+-...+....+|+|+||||+.           ++.... .|+|.. .+  .   .
T Consensus       217 iSassL-----tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~-~~--~---s  285 (428)
T KOG0740|consen  217 ISASSL-----TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFD-GK--N---S  285 (428)
T ss_pred             ccHHHh-----hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhc-cc--c---C
Confidence            555544     344455       3333334445589999999753           233333 333333 22  1   1


Q ss_pred             CCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHH
Q 036633          336 GIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETK  415 (550)
Q Consensus       336 ~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~  415 (550)
                      .+.    .++++|.|||.+-+                     .+.+++.|+..++.++   ..+.+....++...|.+  
T Consensus       286 ~~~----drvlvigaTN~P~e---------------------~Dea~~Rrf~kr~yip---lPd~etr~~~~~~ll~~--  335 (428)
T KOG0740|consen  286 APD----DRVLVIGATNRPWE---------------------LDEAARRRFVKRLYIP---LPDYETRSLLWKQLLKE--  335 (428)
T ss_pred             CCC----CeEEEEecCCCchH---------------------HHHHHHHHhhceeeec---CCCHHHHHHHHHHHHHh--
Confidence            111    26789999998632                     2345666886666776   67888888888888855  


Q ss_pred             HHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          416 RRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       416 ~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                           ++.   .+++..++.|++..- .|  ++-++...+..
T Consensus       336 -----~~~---~l~~~d~~~l~~~Te-gy--sgsdi~~l~ke  366 (428)
T KOG0740|consen  336 -----QPN---GLSDLDISLLAKVTE-GY--SGSDITALCKE  366 (428)
T ss_pred             -----CCC---CccHHHHHHHHHHhc-Cc--ccccHHHHHHH
Confidence                 222   456677777776321 11  22445555544

>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []

Probab=99.00  E-value=2.8e-10  Score=93.56  Aligned_cols=76  Identities=13%  Similarity=0.215  Sum_probs=69.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCC
Q 036633          398 LLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAG  473 (550)
Q Consensus       398 L~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~  473 (550)
                      |+.+++..|+...|.++.+++..+|+ ++.+++++.++|++.|| +.+||  |+|+++|++   +|+++.++.|.+.+++
T Consensus         1 L~~~~l~~I~~~~l~~l~~~l~~~~i-~l~~~~~~~~~l~~~~~~~~~GA--R~l~r~i~~~i~~~la~~il~~~~~~g~   77 (81)
T PF10431_consen    1 LSEEDLEKIADLQLKKLNERLKEKGI-ELEFDDAVVDYLAEKGYDPEYGA--RPLRRIIEREIEPPLADAILSGKIKEGD   77 (81)
T ss_dssp             --HHHHHHHHHSHHHHHHHHHHHTTE-EEEE-HHHHHHHHHHHHHTTTTT--TCHHHHHHHHHHHHHHHHHHHSCSCTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCC-eEEecHHHHHHHHHhCcccCCCH--HHHHHHHHHHHHHHHHHHHHcCCCCCcC
Confidence            67899999999999999999999999 99999999999999999 99999  999999999   9999999999988876


Q ss_pred             ccc
Q 036633          474 YNH  476 (550)
Q Consensus       474 ~~~  476 (550)
                      .++
T Consensus        78 ~v~   80 (81)
T PF10431_consen   78 TVR   80 (81)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            654

This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....

>PRK08116 hypothetical protein; Validated

Probab=99.00  E-value=3.8e-09  Score=106.63  Aligned_cols=122  Identities=16%  Similarity=0.180  Sum_probs=82.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhh------hHHhHHHHHHHhCCCCeEEeccc--
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK------HFFDSLAALVKKRPYSVVLFDKI--  310 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s------~liG~lt~al~~~p~~VlllDEI--  310 (550)
                      ..++|+||+|||||+||.++++.+..   ...+++.++++++......+      .-...+.+.+.  ...+|+||++  
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~  189 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIE---KGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGA  189 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccC
Confidence            46999999999999999999999876   45577888876653221100      00002222333  3469999999  


Q ss_pred             cccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc---
Q 036633          311 EKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD---  387 (550)
Q Consensus       311 eka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid---  387 (550)
                      ++.++..+..|+.+++..  .  .        .+..+|+|||.....+..                .+.+.+++|+-   
T Consensus       190 e~~t~~~~~~l~~iin~r--~--~--------~~~~~IiTsN~~~~eL~~----------------~~~~ri~sRl~e~~  241 (268)
T PRK08116        190 ERDTEWAREKVYNIIDSR--Y--R--------KGLPTIVTTNLSLEELKN----------------QYGKRIYDRILEMC  241 (268)
T ss_pred             CCCCHHHHHHHHHHHHHH--H--H--------CCCCEEEECCCCHHHHHH----------------HHhHHHHHHHHHcC
Confidence            667888899999999865  2  1        122389999998766533                35567788862   


Q ss_pred             ceeEec
Q 036633          388 KLVVID  393 (550)
Q Consensus       388 ~ii~f~  393 (550)
                      ..|.|.
T Consensus       242 ~~v~~~  247 (268)
T PRK08116        242 TPVENE  247 (268)
T ss_pred             EEEEee
Confidence            345565

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=98.95  E-value=6.4e-09  Score=105.42  Aligned_cols=147  Identities=14%  Similarity=0.221  Sum_probs=100.7

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCc------eeEEecCCCCc
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDN-DNH------LIHFDMGNYTE  282 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~------li~id~s~~~~  282 (550)
                      +|..+++.+..++...   +       -|..+||+||  +||+++|+.+|+.+...+.. ..+      ..+++.+.+++
T Consensus         6 ~q~~~~~~L~~~~~~~---r-------l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD   73 (290)
T PRK07276          6 KQPKVFQRFQTILEQD---R-------LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD   73 (290)
T ss_pred             HHHHHHHHHHHHHHcC---C-------cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence            5788888888888766   1       2389999996  68999999999999862210 001      11122222222


Q ss_pred             hhhh---hhHHh-----HHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEe
Q 036633          283 LESI---KHFFD-----SLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMT  350 (550)
Q Consensus       283 ~~~~---s~liG-----~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~T  350 (550)
                      -+.+   ...|+     .+...+...    ++.|++||++|+++++..|.||+.+|+.  .           .+++||++
T Consensus        74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEP--p-----------~~t~~iL~  140 (290)
T PRK07276         74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEP--Q-----------SEIYIFLL  140 (290)
T ss_pred             eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCC--C-----------CCeEEEEE
Confidence            2111   11222     344444443    4579999999999999999999999998  6           67888888


Q ss_pred             CCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH
Q 036633          351 SDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR  407 (550)
Q Consensus       351 sN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~  407 (550)
                      |+..                     ..+-|-++||| ++|.|.   + +.+++..++
T Consensus       141 t~~~---------------------~~lLpTI~SRc-q~i~f~---~-~~~~~~~~L  171 (290)
T PRK07276        141 TNDE---------------------NKVLPTIKSRT-QIFHFP---K-NEAYLIQLL  171 (290)
T ss_pred             ECCh---------------------hhCchHHHHcc-eeeeCC---C-cHHHHHHHH
Confidence            7653                     35667799999 899998   7 666655544

>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=8.5e-09  Score=117.65  Aligned_cols=195  Identities=20%  Similarity=0.238  Sum_probs=126.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchh---h--hcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA---A--KKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~---~--~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..|=|-+..+..+-+.+...+.   .  ..++   ..|.-+||+||||||||.+|+++|..+..   .+..+ .+.|..-
T Consensus       265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i---tpPrgvL~~GppGTGkTl~araLa~~~s~---~~~ki-sffmrkg  337 (1080)
T KOG0732|consen  265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNI---TPPRGVLFHGPPGTGKTLMARALAAACSR---GNRKI-SFFMRKG  337 (1080)
T ss_pred             cccccHHHHHHHHHHHHHhHhhhhhHhhhccc---CCCcceeecCCCCCchhHHHHhhhhhhcc---ccccc-chhhhcC
Confidence            3466777788777777655411   0  1112   23367999999999999999999999876   44322 2222211


Q ss_pred             CchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          281 TELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       281 ~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                        ..-.++++|       .+-+..+++..+|+|||||+-+           |.++...||-+|+.=      ++     .
T Consensus       338 --aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGl------ds-----R  404 (1080)
T KOG0732|consen  338 --ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGL------DS-----R  404 (1080)
T ss_pred             --chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCC------CC-----C
Confidence              122566777       3333344455599999999844           457888899888633      11     1


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhh--hhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSL--LKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~l--l~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                      ..+++|-+||..                     ....|++  -.|+|..+.|.   -.+.++..+|+..+=         
T Consensus       405 gqVvvigATnRp---------------------da~dpaLRRPgrfdref~f~---lp~~~ar~~Il~Iht---------  451 (1080)
T KOG0732|consen  405 GQVVVIGATNRP---------------------DAIDPALRRPGRFDREFYFP---LPDVDARAKILDIHT---------  451 (1080)
T ss_pred             CceEEEcccCCc---------------------cccchhhcCCcccceeEeee---CCchHHHHHHHHHhc---------
Confidence            445689999975                     4677888  49999999998   556666777766433         


Q ss_pred             CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ... .-.++.....+|++.+ +.||.  ..|+-+...
T Consensus       452 rkw-~~~i~~~l~~~la~~t-~gy~g--aDlkaLCTe  484 (1080)
T KOG0732|consen  452 RKW-EPPISRELLLWLAEET-SGYGG--ADLKALCTE  484 (1080)
T ss_pred             cCC-CCCCCHHHHHHHHHhc-cccch--HHHHHHHHH
Confidence            222 3346777888888754 34454  667766654

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.94  E-value=8.7e-10  Score=104.49  Aligned_cols=120  Identities=21%  Similarity=0.264  Sum_probs=69.6

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh---HHHHHHHhCCCCeEEecccccc-
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD---SLAALVKKRPYSVVLFDKIEKA-  313 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG---~lt~al~~~p~~VlllDEIeka-  313 (550)
                      +.+++|+||||||||++|.+++..+..   ...+...++++++.+....+.--+   .+...+.+.  .+|+|||+... 
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~~~  121 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGYEP  121 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTSS-
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccceee
Confidence            368999999999999999999998877   556777787766543322111111   334444443  59999999765 


Q ss_pred             -CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhc
Q 036633          314 -NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLL  386 (550)
Q Consensus       314 -~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Ri  386 (550)
                       ++...+.|+++++..  .           .+.-+|+|||.....+.+..++           +....++++|+
T Consensus       122 ~~~~~~~~l~~ii~~R--~-----------~~~~tIiTSN~~~~~l~~~~~d-----------~~~a~aildRl  171 (178)
T PF01695_consen  122 LSEWEAELLFEIIDER--Y-----------ERKPTIITSNLSPSELEEVLGD-----------RALAEAILDRL  171 (178)
T ss_dssp             --HHHHHCTHHHHHHH--H-----------HT-EEEEEESS-HHHHHT--------------------------
T ss_pred             ecccccccchhhhhHh--h-----------cccCeEeeCCCchhhHhhcccc-----------ccccccccccc
Confidence             466788899999876  3           1123677999988776553322           23345667776

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.93  E-value=5.7e-09  Score=103.56  Aligned_cols=142  Identities=16%  Similarity=0.220  Sum_probs=90.7

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhh-
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH-  288 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~-  288 (550)
                      ||..|+..+...+...   .      .....++|+||||||||+||.+|+..+..   ...+++.++++++......+. 
T Consensus        80 ~q~~al~~a~~~~~~~---~------~~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it~~~l~~~l~~~~~  147 (244)
T PRK07952         80 GQMNALSKARQYVEEF---D------GNIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIITVADIMSAMKDTFS  147 (244)
T ss_pred             hHHHHHHHHHHHHHhh---c------cCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEHHHHHHHHHHHHh
Confidence            4555666655554432   1      11258999999999999999999999976   455777777766542111100 


Q ss_pred             ----HHhHHHHHHHhCCCCeEEeccccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633          289 ----FFDSLAALVKKRPYSVVLFDKIEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM  362 (550)
Q Consensus       289 ----liG~lt~al~~~p~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~  362 (550)
                          -...+.+.+.  ...+|+|||++....  -....|.++++..  .  .        .+.-+|+|||...+.+.   
T Consensus       148 ~~~~~~~~~l~~l~--~~dlLvIDDig~~~~s~~~~~~l~~Ii~~R--y--~--------~~~~tiitSNl~~~~l~---  210 (244)
T PRK07952        148 NSETSEEQLLNDLS--NVDLLVIDEIGVQTESRYEKVIINQIVDRR--S--S--------SKRPTGMLTNSNMEEMT---  210 (244)
T ss_pred             hccccHHHHHHHhc--cCCEEEEeCCCCCCCCHHHHHHHHHHHHHH--H--h--------CCCCEEEeCCCCHHHHH---
Confidence                0001222222  357999999977643  3566888999765  2  1        12337899999876663   


Q ss_pred             hhhhHhhHHHHhccCCChhhhhhcc----ceeEec
Q 036633          363 LTATYGRVNEVTGSLFKPSLLKLLD----KLVVID  393 (550)
Q Consensus       363 ~~~~~~~~~~~l~~~f~p~ll~Rid----~ii~f~  393 (550)
                                   ..|+..+++|+-    .+|.|.
T Consensus       211 -------------~~~g~ri~sRl~~~~~~~i~f~  232 (244)
T PRK07952        211 -------------KLLGERVMDRMRLGNSLWVIFN  232 (244)
T ss_pred             -------------HHhChHHHHHHHHCCceEEEee
Confidence                         356677888882    367777

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=98.92  E-value=6.1e-09  Score=112.71  Aligned_cols=198  Identities=18%  Similarity=0.218  Sum_probs=122.3

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccC------------CCCCCceeE
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDN------------NDNDNHLIH  274 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~------------~~~~~~li~  274 (550)
                      .++|+++++.+|+..+..+   ..|+..+  ..+++|+||||+|||+||+.|++.+-..            -..+.|+.-
T Consensus        77 d~yGlee~ieriv~~l~~A---a~gl~~~--~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL~L  151 (644)
T PRK15455         77 EFYGMEEAIEQIVSYFRHA---AQGLEEK--KQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPLGL  151 (644)
T ss_pred             cccCcHHHHHHHHHHHHHH---HHhcCCC--CceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCCCC
Confidence            5899999999999999887   6777432  2699999999999999999999987431            001112111


Q ss_pred             Ee-----------------------------------------------cCCCC------------chhhhhhHHh----
Q 036633          275 FD-----------------------------------------------MGNYT------------ELESIKHFFD----  291 (550)
Q Consensus       275 id-----------------------------------------------~s~~~------------~~~~~s~liG----  291 (550)
                      |+                                               .|...            .+.+.+.|.|    
T Consensus       152 ~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~vdi  231 (644)
T PRK15455        152 FDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGKVDI  231 (644)
T ss_pred             CChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccceeH
Confidence            11                                               00000            0011223333    


Q ss_pred             --------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc--CCeEeecCCeEEEEeCCCCh
Q 036633          292 --------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR--GIAAFDLTNTLIIMTSDLKD  355 (550)
Q Consensus       292 --------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d--~g~~vd~~~~iiI~TsN~g~  355 (550)
                                    .+.+++.....|++=|=|+-|++.+++..||.+.++|  . +..  +.-.++|. .+||..||-. 
T Consensus       232 ~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~--~-i~~~~~~~~i~~D-~vIiaHsNE~-  306 (644)
T PRK15455        232 RKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEG--N-YNGTEGIGAIPFD-GIILAHSNES-  306 (644)
T ss_pred             HhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccC--c-ccCCCCcceeccc-eeEEecCCHH-
Confidence                          2223333333467777799999999999999999999  6 533  23456664 6788999842 


Q ss_pred             HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCC-CHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHH
Q 036633          356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPL-LDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALV  434 (550)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL-~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~  434 (550)
                                   ....-....+.++|++|+ .+|.++   -. .-.+=.+|-+..+..       ..+....+.|.+++
T Consensus       307 -------------E~~~F~~nk~nEA~~DRi-~~V~VP---Y~lr~~eE~kIYeKll~~-------s~l~~~hiAPhtle  362 (644)
T PRK15455        307 -------------EWQTFRNNKNNEAFLDRI-YIVKVP---YCLRVSEEIKIYEKLLRN-------SELAHAPCAPGTLE  362 (644)
T ss_pred             -------------HHHHHhcCccchhhhceE-EEEeCC---ccCChhHHHHHHHHHhcC-------ccccCCCcCccHHH
Confidence                         222333467789999999 666654   22 224445555555532       11112355666655


Q ss_pred             HHHh
Q 036633          435 HIAS  438 (550)
Q Consensus       435 ~L~~  438 (550)
                      .++.
T Consensus       363 ~aA~  366 (644)
T PRK15455        363 MLAR  366 (644)
T ss_pred             HHHH
Confidence            5554

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.9e-08  Score=112.66  Aligned_cols=176  Identities=17%  Similarity=0.224  Sum_probs=126.7

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNY  280 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~  280 (550)
                      -.-|||.++-+.++...+.|.           +..+=+|+|+||||||.++.-||...-...    ..+..++.+||+.+
T Consensus       169 lDPvIGRd~EI~r~iqIL~RR-----------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L  237 (786)
T COG0542         169 LDPVIGRDEEIRRTIQILSRR-----------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL  237 (786)
T ss_pred             CCCCcChHHHHHHHHHHHhcc-----------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH
Confidence            356999999999999999876           223448889999999999999999886522    34567888999877


Q ss_pred             CchhhhhhHHh-------HHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633          281 TELESIKHFFD-------SLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRGIAAFDLTN  344 (550)
Q Consensus       281 ~~~~~~s~liG-------~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~  344 (550)
                      ....   +.-|       .+.+.+.+.+.-|+||||||..         .-+.-|+|-+.|..|+++             
T Consensus       238 vAGa---kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~-------------  301 (786)
T COG0542         238 VAGA---KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR-------------  301 (786)
T ss_pred             hccc---cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE-------------
Confidence            5332   2344       4455566677789999999842         256899999999999333             


Q ss_pred             eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc-C
Q 036633          345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND-S  421 (550)
Q Consensus       345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~-~  421 (550)
                        +|-+|+..                  ..+++|  +++|-.|| +.|...   ..+.++-..|++-.-    .++.. +
T Consensus       302 --~IGATT~~------------------EYRk~iEKD~AL~RRF-Q~V~V~---EPs~e~ti~ILrGlk----~~yE~hH  353 (786)
T COG0542         302 --CIGATTLD------------------EYRKYIEKDAALERRF-QKVLVD---EPSVEDTIAILRGLK----ERYEAHH  353 (786)
T ss_pred             --EEEeccHH------------------HHHHHhhhchHHHhcC-ceeeCC---CCCHHHHHHHHHHHH----HHHHHcc
Confidence              45544431                  112455  78899999 788888   889888887766533    34433 4


Q ss_pred             CCccccCCHHHHHHHHh
Q 036633          422 KAVIVCPSTSALVHIAS  438 (550)
Q Consensus       422 ~~~~l~~~~~a~~~L~~  438 (550)
                      +   +.++++|+..-+.
T Consensus       354 ~---V~i~D~Al~aAv~  367 (786)
T COG0542         354 G---VRITDEALVAAVT  367 (786)
T ss_pred             C---ceecHHHHHHHHH
Confidence            3   4888888776665

>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.88  E-value=1.7e-08  Score=99.90  Aligned_cols=102  Identities=17%  Similarity=0.238  Sum_probs=80.4

Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhh
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSL  382 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~l  382 (550)
                      +|+|+||++-++-+.+..|-+.+++.  -            -.++||+||.|-+.+..-.    +.     --..++-+|
T Consensus       290 GVLFIDEvHMLDIEcFsFlNrAlE~d--~------------~PiiimaTNrgit~iRGTn----~~-----SphGiP~D~  346 (454)
T KOG2680|consen  290 GVLFIDEVHMLDIECFSFLNRALEND--M------------APIIIMATNRGITRIRGTN----YR-----SPHGIPIDL  346 (454)
T ss_pred             ceEEEeeehhhhhHHHHHHHHHhhhc--c------------CcEEEEEcCCceEEeecCC----CC-----CCCCCcHHH
Confidence            79999999999999999999999887  2            2468999999876553210    00     012467899


Q ss_pred             hhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc
Q 036633          383 LKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA  441 (550)
Q Consensus       383 l~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~  441 (550)
                      +.|+ -+|...   |++++++.+|+...+.+       .   .+.++++|++.|..-+.
T Consensus       347 lDR~-lII~t~---py~~~d~~~IL~iRc~E-------E---dv~m~~~A~d~Lt~i~~  391 (454)
T KOG2680|consen  347 LDRM-LIISTQ---PYTEEDIKKILRIRCQE-------E---DVEMNPDALDLLTKIGE  391 (454)
T ss_pred             hhhh-heeecc---cCcHHHHHHHHHhhhhh-------h---ccccCHHHHHHHHHhhh
Confidence            9999 899999   99999999999988743       4   34889999999987543

>PRK08181 transposase; Validated

Probab=98.88  E-value=8.7e-09  Score=103.73  Aligned_cols=128  Identities=15%  Similarity=0.230  Sum_probs=80.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHh-CCCCeEEeccccccC--H
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKK-RPYSVVLFDKIEKAN--S  315 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~-~p~~VlllDEIeka~--~  315 (550)
                      .+++|+||||||||.||.+++..+..   ....++.++++++.+....+.--+.+...++. ....+|+|||++..+  +
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~  183 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQ  183 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCH
Confidence            57999999999999999999988765   44466667765544322211111111112211 234699999998764  4


Q ss_pred             HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc---ceeEe
Q 036633          316 SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD---KLVVI  392 (550)
Q Consensus       316 ~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid---~ii~f  392 (550)
                      ..+..|+++++..  .           .+.-+|+|||.+...+....++           ..+..++++|+-   .+|.|
T Consensus       184 ~~~~~Lf~lin~R--~-----------~~~s~IiTSN~~~~~w~~~~~D-----------~~~a~aildRL~h~~~~i~~  239 (269)
T PRK08181        184 AETSVLFELISAR--Y-----------ERRSILITANQPFGEWNRVFPD-----------PAMTLAAVDRLVHHATIFEM  239 (269)
T ss_pred             HHHHHHHHHHHHH--H-----------hCCCEEEEcCCCHHHHHHhcCC-----------ccchhhHHHhhhcCceEEec
Confidence            5677899999754  3           1123789999988776543221           233456677773   34555


Q ss_pred             c
Q 036633          393 D  393 (550)
Q Consensus       393 ~  393 (550)
                      .
T Consensus       240 ~  240 (269)
T PRK08181        240 N  240 (269)
T ss_pred             C
Confidence            5

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=98.87  E-value=5.3e-08  Score=107.92  Aligned_cols=182  Identities=16%  Similarity=0.101  Sum_probs=123.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--HHHHHHHh------------CCCCe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--SLAALVKK------------RPYSV  304 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--~lt~al~~------------~p~~V  304 (550)
                      +-+++.|+.|+||+++++.++..|..    ..||+.+-.+-     +...|+|  .+..+++.            ...+|
T Consensus        26 gGv~i~g~~G~~ks~~~r~l~~llp~----~~p~r~~p~~~-----t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~Gv   96 (584)
T PRK13406         26 GGVVLRARAGPVRDRWLAALRALLPA----GTPLRRLPPGI-----ADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGV   96 (584)
T ss_pred             ceEEEEcCCCcHHHHHHHHHHHhcCC----CCCcccCCCCC-----cHHHccCCchHHhHhhcCCcCCCCCceeeccCCE
Confidence            78999999999999999999999854    23666655332     4567888  55555543            12489


Q ss_pred             EEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCC-eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh
Q 036633          305 VLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTN-TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL  383 (550)
Q Consensus       305 lllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~-~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll  383 (550)
                      ||+||+..+++.+++.|++.+++|+++ +...|..+.+.- .++|+|-| +.+.                 ...+++.++
T Consensus        97 L~lDe~n~~~~~~~~aLleame~G~vt-IeR~G~s~~~Pa~F~LIat~~-~~~~-----------------~~~L~~~lL  157 (584)
T PRK13406         97 LVLAMAERLEPGTAARLAAALDTGEVR-LERDGLALRLPARFGLVALDE-GAEE-----------------DERAPAALA  157 (584)
T ss_pred             EEecCcccCCHHHHHHHHHHHhCCcEE-EEECCcEEecCCCcEEEecCC-Chhc-----------------ccCCCHHhH
Confidence            999999999999999999999999666 544566666644 44555422 2111                 246789999


Q ss_pred             hhccceeEecCCCCCCHHHHHHH--HHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCC-cccHHHHHHcc
Q 036633          384 KLLDKLVVIDLAVPLLDTTRLLL--REWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQ-NGEGLKRWMDQ  457 (550)
Q Consensus       384 ~Rid~ii~f~~~~pL~~e~i~~I--~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~Ga-N~R~L~~~i~~  457 (550)
                      .||+-.|.+.   +++..+....  ....+....+++  .   .+.++++++++++..+. .+|. +.|.--.++.-
T Consensus       158 DRf~l~v~v~---~~~~~~~~~~~~~~~~I~~AR~rl--~---~v~v~~~~l~~i~~~~~-~~gv~S~Ra~i~llra  225 (584)
T PRK13406        158 DRLAFHLDLD---GLALRDAREIPIDADDIAAARARL--P---AVGPPPEAIAALCAAAA-ALGIASLRAPLLALRA  225 (584)
T ss_pred             hheEEEEEcC---CCChHHhcccCCCHHHHHHHHHHH--c---cCCCCHHHHHHHHHHHH-HhCCCCcCHHHHHHHH
Confidence            9999888888   7666544321  111222222333  2   45789999999987554 2232 33877777654

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.86  E-value=3.1e-08  Score=87.63  Aligned_cols=82  Identities=28%  Similarity=0.272  Sum_probs=58.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhh----------------hHHhHHHHHHHhCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK----------------HFFDSLAALVKKRPY  302 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s----------------~liG~lt~al~~~p~  302 (550)
                      .+++|+||||||||++++.++..+..   ....++.++++.........                ..+..+....+..+.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGP---PGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKP   79 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCC---CCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence            58999999999999999999999877   33358888888765432221                011133444444556


Q ss_pred             CeEEeccccccCHHHHHHHHH
Q 036633          303 SVVLFDKIEKANSSILNLLLK  323 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~  323 (550)
                      .||++||++.+..........
T Consensus        80 ~viiiDei~~~~~~~~~~~~~  100 (148)
T smart00382       80 DVLILDEITSLLDAEQEALLL  100 (148)
T ss_pred             CEEEEECCcccCCHHHHHHHH
Confidence            899999999998877665544

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.85  E-value=1.3e-08  Score=101.99  Aligned_cols=106  Identities=21%  Similarity=0.243  Sum_probs=73.6

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh----HHHHHHHhCCCCeEEeccccc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD----SLAALVKKRPYSVVLFDKIEK  312 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG----~lt~al~~~p~~VlllDEIek  312 (550)
                      ++.+++|+||||||||.||-+|+..+..   ...+++.+..+++......+.--|    .|...+  +.+.||+|||+..
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~---~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~  178 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLK---AGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGY  178 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccC
Confidence            4579999999999999999999999976   555677777766643322211112    222223  4456999999987


Q ss_pred             --cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          313 --ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       313 --a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                        .++...+.|+|++..-  + .         +... ++|||.....+..
T Consensus       179 ~~~~~~~~~~~~q~I~~r--~-~---------~~~~-~~tsN~~~~~~~~  215 (254)
T COG1484         179 EPFSQEEADLLFQLISRR--Y-E---------SRSL-IITSNLSFGEWDE  215 (254)
T ss_pred             ccCCHHHHHHHHHHHHHH--H-h---------hccc-eeecCCChHHHHh
Confidence              5566788888888766  3 1         1223 9999998777644

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.83  E-value=1.5e-08  Score=104.91  Aligned_cols=117  Identities=21%  Similarity=0.295  Sum_probs=79.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--HH---HHHHHhCCCCeEEecccc--
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--SL---AALVKKRPYSVVLFDKIE--  311 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--~l---t~al~~~p~~VlllDEIe--  311 (550)
                      .+++|+||||||||+||.+||+.+..   ....++.++++++........+-.  ..   .+.+..  ..+|+||+++  
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~---~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e  258 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLD---RGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTE  258 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCC
Confidence            68999999999999999999999977   555777777766533221111000  11   122232  3699999994  


Q ss_pred             ccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc
Q 036633          312 KANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK  388 (550)
Q Consensus       312 ka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~  388 (550)
                      ..++..++.|+.+++..  .  ..        +.-+|+|||.+...+..                .|++.+++|+-.
T Consensus       259 ~~t~~~~~~Lf~iin~R--~--~~--------~k~tIiTSNl~~~el~~----------------~~~eri~SRL~~  307 (329)
T PRK06835        259 KITEFSKSELFNLINKR--L--LR--------QKKMIISTNLSLEELLK----------------TYSERISSRLLG  307 (329)
T ss_pred             CCCHHHHHHHHHHHHHH--H--HC--------CCCEEEECCCCHHHHHH----------------HHhHHHHHHHHc
Confidence            55678888999999765  2  11        12278999998766533                466778888843

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=98.82  E-value=7.9e-08  Score=98.22  Aligned_cols=144  Identities=17%  Similarity=0.179  Sum_probs=98.4

Q ss_pred             HHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-------CCCCceeEEecCCCCchhhh
Q 036633          214 AIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-------DNDNHLIHFDMGNYTELESI  286 (550)
Q Consensus       214 ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-------~~~~~li~id~s~~~~~~~~  286 (550)
                      +++.+.+++...          +-+.++||+||.|+||+++|+.+++.+....       .....++.+|-..  ..-.+
T Consensus         4 ~~~~l~~~i~~~----------~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--~~i~v   71 (299)
T PRK07132          4 WIKFLDNSATQN----------KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--KDLSK   71 (299)
T ss_pred             HHHHHHHHHHhC----------CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--CcCCH
Confidence            455555566543          1227999999999999999999999985410       0111344454111  11111


Q ss_pred             hhHHhHHHHHHHh-----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633          287 KHFFDSLAALVKK-----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV  361 (550)
Q Consensus       287 s~liG~lt~al~~-----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~  361 (550)
                      .... .+.+.+..     .++.|+++|++|+++...++.||+.+++.  .           .+|+||++|+..       
T Consensus        72 d~Ir-~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEP--p-----------~~t~~il~~~~~-------  130 (299)
T PRK07132         72 SEFL-SAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEP--P-----------KDTYFLLTTKNI-------  130 (299)
T ss_pred             HHHH-HHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCC--C-----------CCeEEEEEeCCh-------
Confidence            1111 23333322     35679999999999999999999999988  6           778888877632       


Q ss_pred             hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633          362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE  408 (550)
Q Consensus       362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~  408 (550)
                                    ..+-|.+.+|| +++.|.   |++.+++...+.
T Consensus       131 --------------~kll~TI~SRc-~~~~f~---~l~~~~l~~~l~  159 (299)
T PRK07132        131 --------------NKVLPTIVSRC-QVFNVK---EPDQQKILAKLL  159 (299)
T ss_pred             --------------HhChHHHHhCe-EEEECC---CCCHHHHHHHHH
Confidence                          24556799999 899999   999998876654

>PF13173 AAA_14: AAA domain

Probab=98.81  E-value=3.3e-08  Score=88.45  Aligned_cols=122  Identities=16%  Similarity=0.198  Sum_probs=80.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHh---CCCCeEEeccccccCH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKK---RPYSVVLFDKIEKANS  315 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~---~p~~VlllDEIeka~~  315 (550)
                      .++++.||.|||||++++.+++.+..    ..+++.+|+...........   .+.+.+.+   ....+||||||++++ 
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~----~~~~~yi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~iDEiq~~~-   74 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLP----PENILYINFDDPRDRRLADP---DLLEYFLELIKPGKKYIFIDEIQYLP-   74 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcc----cccceeeccCCHHHHHHhhh---hhHHHHHHhhccCCcEEEEehhhhhc-
Confidence            37899999999999999999988762    23889999887754322110   01222222   134799999999996 


Q ss_pred             HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCC
Q 036633          316 SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLA  395 (550)
Q Consensus       316 ~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~  395 (550)
                      +....+-.+.+++  .            ++-||+|++.....                 .......+.+|. ..+...  
T Consensus        75 ~~~~~lk~l~d~~--~------------~~~ii~tgS~~~~l-----------------~~~~~~~l~gr~-~~~~l~--  120 (128)
T PF13173_consen   75 DWEDALKFLVDNG--P------------NIKIILTGSSSSLL-----------------SKDIAESLAGRV-IEIELY--  120 (128)
T ss_pred             cHHHHHHHHHHhc--c------------CceEEEEccchHHH-----------------hhcccccCCCeE-EEEEEC--
Confidence            6777777777766  2            33356655432111                 123345678888 578888  


Q ss_pred             CCCCHHHH
Q 036633          396 VPLLDTTR  403 (550)
Q Consensus       396 ~pL~~e~i  403 (550)
                       ||+-.|.
T Consensus       121 -Plsf~E~  127 (128)
T PF13173_consen  121 -PLSFREF  127 (128)
T ss_pred             -CCCHHHh
Confidence             9987764

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.8e-08  Score=105.97  Aligned_cols=197  Identities=19%  Similarity=0.202  Sum_probs=129.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCC-CcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLS-SRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~-~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~  283 (550)
                      ..+-|-...+..+...+...+....... ..-+| ..+|++||||||||.+++++|+....      .++.+|++++..+
T Consensus       184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a------~~~~i~~peli~k  257 (693)
T KOG0730|consen  184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA------FLFLINGPELISK  257 (693)
T ss_pred             cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc------eeEecccHHHHHh
Confidence            4566777777777777655421111110 11234 78999999999999999999999766      8899998876422


Q ss_pred             h---hhhhHHhHHHHHHHhCCCCeEEeccccccCH----------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEe
Q 036633          284 E---SIKHFFDSLAALVKKRPYSVVLFDKIEKANS----------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMT  350 (550)
Q Consensus       284 ~---~~s~liG~lt~al~~~p~~VlllDEIeka~~----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~T  350 (550)
                      .   +.+.|--.|.++....+.+++|+||++..-|          .+...|+.+++.-  .         .-.++|++.|
T Consensus       258 ~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~--~---------~~~~vivl~a  326 (693)
T KOG0730|consen  258 FPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGL--K---------PDAKVIVLAA  326 (693)
T ss_pred             cccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhC--c---------CcCcEEEEEe
Confidence            1   1222222566666666359999999997764          4566677666533  1         1167789999


Q ss_pred             CCCChHHHHHhhhhhhHhhHHHHhccCCChhhh-hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 036633          351 SDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL-KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPS  429 (550)
Q Consensus       351 sN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll-~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~  429 (550)
                      ||..                     ..++|++. +|+|.-+...   -.+......|++.....       .+.   . +
T Consensus       327 tnrp---------------------~sld~alRRgRfd~ev~Ig---iP~~~~RldIl~~l~k~-------~~~---~-~  371 (693)
T KOG0730|consen  327 TNRP---------------------DSLDPALRRGRFDREVEIG---IPGSDGRLDILRVLTKK-------MNL---L-S  371 (693)
T ss_pred             cCCc---------------------cccChhhhcCCCcceeeec---CCCchhHHHHHHHHHHh-------cCC---c-c
Confidence            9975                     46788888 5999999998   77888888888876643       222   2 4


Q ss_pred             HHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          430 TSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       430 ~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +..+..++..+.   |.-|.+|...+..
T Consensus       372 ~~~l~~iA~~th---GyvGaDL~~l~~e  396 (693)
T KOG0730|consen  372 DVDLEDIAVSTH---GYVGADLAALCRE  396 (693)
T ss_pred             hhhHHHHHHHcc---chhHHHHHHHHHH
Confidence            556666665332   2122455555543

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.79  E-value=2.4e-08  Score=115.33  Aligned_cols=148  Identities=20%  Similarity=0.226  Sum_probs=110.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh----------------HHHHHHHhCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD----------------SLAALVKKRPY  302 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG----------------~lt~al~~~p~  302 (550)
                      .++||-|.||||||++..+||+..+.      .++|||+|+-++   ...|+|                -|..++|.  +
T Consensus      1544 kpilLEGsPGVGKTSlItaLAr~tG~------kliRINLSeQTd---L~DLfGsd~Pve~~Gef~w~dapfL~amr~--G 1612 (4600)
T COG5271        1544 KPILLEGSPGVGKTSLITALARKTGK------KLIRINLSEQTD---LCDLFGSDLPVEEGGEFRWMDAPFLHAMRD--G 1612 (4600)
T ss_pred             CceeecCCCCccHHHHHHHHHHHhcC------ceEEeeccccch---HHHHhCCCCCcccCceeEecccHHHHHhhc--C
Confidence            36899999999999999999999877      999999998764   445677                45555554  4


Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChh
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPS  381 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~  381 (550)
                      +-|+|||+.-|+.+|+.-|-..||...--++..-...++. .|..|++|-|.....     +.          ++.++..
T Consensus      1613 ~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qg-----gG----------RKgLPkS 1677 (4600)
T COG5271        1613 GWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQG-----GG----------RKGLPKS 1677 (4600)
T ss_pred             CEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcC-----CC----------cccCCHH
Confidence            5899999999999999999999986511112211444444 455567766652211     11          4678999


Q ss_pred             hhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHH
Q 036633          382 LLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKR  416 (550)
Q Consensus       382 ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~  416 (550)
                      |++|+ .+|...   .|+.+|+..|+......++.
T Consensus      1678 F~nRF-svV~~d---~lt~dDi~~Ia~~~yp~v~~ 1708 (4600)
T COG5271        1678 FLNRF-SVVKMD---GLTTDDITHIANKMYPQVNE 1708 (4600)
T ss_pred             Hhhhh-heEEec---ccccchHHHHHHhhCCccCh
Confidence            99999 688899   99999999998876654333

>PRK09183 transposase/IS protein; Provisional

Probab=98.77  E-value=1.8e-08  Score=101.17  Aligned_cols=106  Identities=17%  Similarity=0.173  Sum_probs=67.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHh--CCCCeEEeccccc--cC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKK--RPYSVVLFDKIEK--AN  314 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~--~p~~VlllDEIek--a~  314 (550)
                      .+++|+||||||||++|.+|+..+..   ....+..+++.++......+..-|.+...+..  ....+++|||++.  .+
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~a~~---~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~  179 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYEAVR---AGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFS  179 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCC
Confidence            58899999999999999999877644   33355556655443221111111112122211  2336999999986  55


Q ss_pred             HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          315 SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       315 ~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      +...+.|+++++..  .           .+.-+|+|||.+...+..
T Consensus       180 ~~~~~~lf~li~~r--~-----------~~~s~iiTsn~~~~~w~~  212 (259)
T PRK09183        180 QEEANLFFQVIAKR--Y-----------EKGSMILTSNLPFGQWDQ  212 (259)
T ss_pred             hHHHHHHHHHHHHH--H-----------hcCcEEEecCCCHHHHHH
Confidence            67777899999765  3           112278899998877755

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=98.76  E-value=2.7e-08  Score=98.61  Aligned_cols=126  Identities=17%  Similarity=0.138  Sum_probs=85.8

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCce------eEEecCCCCchhhh---hhHHh-----HHHHHHHh---
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHL------IHFDMGNYTELESI---KHFFD-----SLAALVKK---  299 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~l------i~id~s~~~~~~~~---s~liG-----~lt~al~~---  299 (550)
                      .|..+||+||+|+||..+|.++|+.+...+ ...+.      ..++-..+++-+.+   ..-+|     .+.+.+..   
T Consensus         6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~-~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~   84 (261)
T PRK05818          6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTK-ANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV   84 (261)
T ss_pred             CCcceeeeCCCCCcHHHHHHHHHHHHcCCC-CCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence            458999999999999999999999997621 00100      00111112211110   01122     33433332   


Q ss_pred             --CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccC
Q 036633          300 --RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSL  377 (550)
Q Consensus       300 --~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~  377 (550)
                        .++.|+++|++|++++...|.||+.+|+.  .           .+++||++|+..                     ..
T Consensus        85 e~~~~KV~II~~ae~m~~~AaNaLLK~LEEP--p-----------~~t~fiLit~~~---------------------~~  130 (261)
T PRK05818         85 ESNGKKIYIIYGIEKLNKQSANSLLKLIEEP--P-----------KNTYGIFTTRNE---------------------NN  130 (261)
T ss_pred             hcCCCEEEEeccHhhhCHHHHHHHHHhhcCC--C-----------CCeEEEEEECCh---------------------Hh
Confidence              34679999999999999999999999998  6           788899988753                     35


Q ss_pred             CChhhhhhccceeEecCCCCCCHH
Q 036633          378 FKPSLLKLLDKLVVIDLAVPLLDT  401 (550)
Q Consensus       378 f~p~ll~Rid~ii~f~~~~pL~~e  401 (550)
                      ..|-++||| +.+.|.   ++...
T Consensus       131 lLpTI~SRC-q~~~~~---~~~~~  150 (261)
T PRK05818        131 ILNTILSRC-VQYVVL---SKEKK  150 (261)
T ss_pred             CchHhhhhe-eeeecC---Chhhh
Confidence            567799999 788888   76443

>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]

Probab=98.76  E-value=1.1e-08  Score=102.36  Aligned_cols=174  Identities=14%  Similarity=0.172  Sum_probs=114.5

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++||++.+..+.+.....          .- .++||+||||+|||....+.|+.+++.....+-+..+|.|.-..-..
T Consensus        41 ~dv~~~~ei~st~~~~~~~~----------~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~  109 (360)
T KOG0990|consen   41 GIVIKQEPIWSTENRYSGMP----------GL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDP  109 (360)
T ss_pred             hhHhcCCchhhHHHHhccCC----------CC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcc
Confidence            46889999887766653322          12 49999999999999999999999988100011122233332221111


Q ss_pred             hhhHHh--HHHHH--HH--hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633          286 IKHFFD--SLAAL--VK--KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY  359 (550)
Q Consensus       286 ~s~liG--~lt~a--l~--~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~  359 (550)
                      +..-+-  .+|..  +-  ...+..|+|||.|.+..+.|+.|.++++.-  .           .|+.|+.-+|..     
T Consensus       110 vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~--t-----------~n~rF~ii~n~~-----  171 (360)
T KOG0990|consen  110 VRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKY--T-----------ANTRFATISNPP-----  171 (360)
T ss_pred             hHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHh--c-----------cceEEEEeccCh-----
Confidence            111110  11210  11  125679999999999999999999988765  4           455577767753     


Q ss_pred             HhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHh
Q 036633          360 EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIAS  438 (550)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~  438 (550)
                                      ....|++.+|| .-+.|.   |++...+.....+.++.       .   .+..+++....++.
T Consensus       172 ----------------~ki~pa~qsRc-trfrf~---pl~~~~~~~r~shi~e~-------e---~~~~~~~~~~a~~r  220 (360)
T KOG0990|consen  172 ----------------QKIHPAQQSRC-TRFRFA---PLTMAQQTERQSHIRES-------E---QKETNPEGYSALGR  220 (360)
T ss_pred             ----------------hhcCchhhccc-ccCCCC---CCChhhhhhHHHHHHhc-------c---hhhcCHHHHHHHHH
Confidence                            35678899999 688999   99999998888887743       1   34566666666554

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=98.72  E-value=2.5e-07  Score=90.26  Aligned_cols=178  Identities=21%  Similarity=0.260  Sum_probs=94.9

Q ss_pred             ccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhh
Q 036633          208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIK  287 (550)
Q Consensus       208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s  287 (550)
                      ++|.+.-++.+.+.+...           ...+++++||.|+|||++++.+.+.+..   .....+.+++..-.......
T Consensus         1 F~gR~~el~~l~~~l~~~-----------~~~~~~l~G~rg~GKTsLl~~~~~~~~~---~~~~~~y~~~~~~~~~~~~~   66 (234)
T PF01637_consen    1 FFGREKELEKLKELLESG-----------PSQHILLYGPRGSGKTSLLKEFINELKE---KGYKVVYIDFLEESNESSLR   66 (234)
T ss_dssp             S-S-HHHHHHHHHCHHH-------------SSEEEEEESTTSSHHHHHHHHHHHCT-----EECCCHHCCTTBSHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhh-----------cCcEEEEEcCCcCCHHHHHHHHHHHhhh---cCCcEEEEecccchhhhHHH
Confidence            467777777777666532           1268899999999999999999998833   11122222221111110000


Q ss_pred             hH-------------H------------------------hHHHHHHHhCC-CCeEEeccccccC------HHHHHHHHH
Q 036633          288 HF-------------F------------------------DSLAALVKKRP-YSVVLFDKIEKAN------SSILNLLLK  323 (550)
Q Consensus       288 ~l-------------i------------------------G~lt~al~~~p-~~VlllDEIeka~------~~v~~~Ll~  323 (550)
                      .+             +                        -.+.+.+.... ..||+|||++.+.      ++....|..
T Consensus        67 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~  146 (234)
T PF01637_consen   67 SFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRS  146 (234)
T ss_dssp             HHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHH
Confidence            00             0                        03333444332 3799999999988      677888888


Q ss_pred             hhhhccccccccCCeEeecCC-eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHH
Q 036633          324 ILKTDFNRKATRGIAAFDLTN-TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTT  402 (550)
Q Consensus       324 ~ld~g~~~~l~d~g~~vd~~~-~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~  402 (550)
                      .++..  .  .       -.+ ++|+++|+.+   +..            .+... .+.+.+|+.. +.+.   ||+.++
T Consensus       147 ~~~~~--~--~-------~~~~~~v~~~S~~~---~~~------------~~~~~-~~~~~~~~~~-~~l~---~l~~~e  195 (234)
T PF01637_consen  147 LLDSL--L--S-------QQNVSIVITGSSDS---LME------------EFLDD-KSPLFGRFSH-IELK---PLSKEE  195 (234)
T ss_dssp             HHHH---------------TTEEEEEEESSHH---HHH------------HTT-T-TSTTTT---E-EEE-------HHH
T ss_pred             HHhhc--c--c-------cCCceEEEECCchH---HHH------------Hhhcc-cCccccccce-EEEe---eCCHHH
Confidence            88773  1  0       023 3445544421   111            11122 3458899965 9999   999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633          403 RLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN  439 (550)
Q Consensus       403 i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~  439 (550)
                      ..+++...+.+       . . .+.++++.++.+...
T Consensus       196 ~~~~~~~~~~~-------~-~-~~~~~~~~~~~i~~~  223 (234)
T PF01637_consen  196 AREFLKELFKE-------L-I-KLPFSDEDIEEIYSL  223 (234)
T ss_dssp             HHHHHHHHHHC-------C--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHH-------h-h-cccCCHHHHHHHHHH
Confidence            99998886643       2 3 335588888888763

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=5e-07  Score=98.56  Aligned_cols=186  Identities=17%  Similarity=0.238  Sum_probs=118.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh--hhhHHh-HHHHHHHhCCCCeEEecccccc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKA  313 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka  313 (550)
                      +++++++.||+|+|||.|++++.++++.  .....+..++|+.......  +.+++- .+++++...| +||+||++|-+
T Consensus       430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k--~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~P-SiIvLDdld~l  506 (952)
T KOG0735|consen  430 RHGNILLNGPKGSGKTNLVKALFDYYSK--DLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAP-SIIVLDDLDCL  506 (952)
T ss_pred             ccccEEEeCCCCCCHhHHHHHHHHHhcc--ccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCC-cEEEEcchhhh
Confidence            4489999999999999999999999875  2344567789999875542  223333 7889999989 89999999864


Q ss_pred             CH-------------HHHHHHH-HhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCC
Q 036633          314 NS-------------SILNLLL-KILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFK  379 (550)
Q Consensus       314 ~~-------------~v~~~Ll-~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~  379 (550)
                      -.             ..+..++ |++..-    .+++      +...+|+|++. .                    ..|+
T Consensus       507 ~~~s~~e~~q~~~~~~rla~flnqvi~~y----~~~~------~~ia~Iat~qe-~--------------------qtl~  555 (952)
T KOG0735|consen  507 ASASSNENGQDGVVSERLAAFLNQVIKIY----LKRN------RKIAVIATGQE-L--------------------QTLN  555 (952)
T ss_pred             hccCcccCCcchHHHHHHHHHHHHHHHHH----HccC------cEEEEEEechh-h--------------------hhcC
Confidence            21             1233333 555432    2221      22346776653 1                    2333


Q ss_pred             hhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          380 PSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       380 p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      |-|.  .+++.++.+.   ++...+...|+...+.+..          .....+.++.++..+ ..|.+  ++|.-.+++
T Consensus       556 ~~L~s~~~Fq~~~~L~---ap~~~~R~~IL~~~~s~~~----------~~~~~~dLd~ls~~T-EGy~~--~DL~ifVeR  619 (952)
T KOG0735|consen  556 PLLVSPLLFQIVIALP---APAVTRRKEILTTIFSKNL----------SDITMDDLDFLSVKT-EGYLA--TDLVIFVER  619 (952)
T ss_pred             hhhcCccceEEEEecC---CcchhHHHHHHHHHHHhhh----------hhhhhHHHHHHHHhc-CCccc--hhHHHHHHH
Confidence            3332  2677778888   8999999999998886422          123444555666533 33456  888888886


Q ss_pred             hhhHHHHHhhhhcCCCc
Q 036633          458 RPSADHVIDKFLRDAGY  474 (550)
Q Consensus       458 ~~la~~~l~~~~~~~~~  474 (550)
                       .+..+++. .+.++..
T Consensus       620 -ai~~a~le-ris~~~k  634 (952)
T KOG0735|consen  620 -AIHEAFLE-RISNGPK  634 (952)
T ss_pred             -HHHHHHHH-HhccCcc
Confidence             55555533 3334434

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=98.67  E-value=4.7e-07  Score=89.27  Aligned_cols=103  Identities=18%  Similarity=0.278  Sum_probs=68.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILN  319 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~  319 (550)
                      .-.+.||+|||||++.+.+|+.++.      +++.+||++-.+...+++++   .+....  ++.++|||+++++.+++.
T Consensus        34 ~~~~~GpagtGKtetik~La~~lG~------~~~vfnc~~~~~~~~l~ril---~G~~~~--GaW~cfdefnrl~~~vLS  102 (231)
T PF12774_consen   34 GGALSGPAGTGKTETIKDLARALGR------FVVVFNCSEQMDYQSLSRIL---KGLAQS--GAWLCFDEFNRLSEEVLS  102 (231)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCTT--------EEEEETTSSS-HHHHHHHH---HHHHHH--T-EEEEETCCCSSHHHHH
T ss_pred             CCCCcCCCCCCchhHHHHHHHHhCC------eEEEecccccccHHHHHHHH---HHHhhc--CchhhhhhhhhhhHHHHH
Confidence            4457999999999999999999988      99999999998887777664   222221  468999999999999888


Q ss_pred             HHHHhhh-------hccccccccCCeEeecC-CeEEEEeCCCC
Q 036633          320 LLLKILK-------TDFNRKATRGIAAFDLT-NTLIIMTSDLK  354 (550)
Q Consensus       320 ~Ll~~ld-------~g~~~~l~d~g~~vd~~-~~iiI~TsN~g  354 (550)
                      .+.+.+.       .+... +.-.|..+... ++-|++|.|.+
T Consensus       103 ~i~~~i~~i~~al~~~~~~-~~~~g~~i~l~~~~~iFiT~np~  144 (231)
T PF12774_consen  103 VISQQIQSIQDALRAKQKS-FTLEGQEIKLNPNCGIFITMNPG  144 (231)
T ss_dssp             HHHHHHHHHHHHHHCTSSE-EEETTCEEE--TT-EEEEEE-B-
T ss_pred             HHHHHHHHHHHhhcccccc-cccCCCEEEEccceeEEEeeccc
Confidence            7766553       33223 33335555544 34466677765

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=98.62  E-value=2.6e-06  Score=88.18  Aligned_cols=124  Identities=19%  Similarity=0.248  Sum_probs=77.2

Q ss_pred             eEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCC-----
Q 036633          304 VVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLF-----  378 (550)
Q Consensus       304 VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f-----  378 (550)
                      ||++|++|+++|+-...++..+..=           .++.|+++|++.+.              +.+...+...+     
T Consensus       175 ViiIDdLDR~~~~~i~~~l~~ik~~-----------~~~~~i~~Il~~D~--------------~~l~~ai~~~~~~~~~  229 (325)
T PF07693_consen  175 VIIIDDLDRCSPEEIVELLEAIKLL-----------LDFPNIIFILAFDP--------------EILEKAIEKNYGEGFD  229 (325)
T ss_pred             EEEEcchhcCCcHHHHHHHHHHHHh-----------cCCCCeEEEEEecH--------------HHHHHHHHhhcCcccc
Confidence            8889999999999888788777432           36689999998763              22333333333     


Q ss_pred             ---ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccC----------CHHHHHHHHhcCc-ccC
Q 036633          379 ---KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCP----------STSALVHIASNAA-RKY  444 (550)
Q Consensus       379 ---~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~----------~~~a~~~L~~~~~-~~~  444 (550)
                         ..+++.++ --++|.+| +++..++...+...+............ .-.+          .......+.. ++ +..
T Consensus       230 ~~~~~~yLeKi-iq~~~~lP-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  305 (325)
T PF07693_consen  230 EIDGREYLEKI-IQVPFSLP-PPSPSDLERYLNELLESLESETNESDD-IETLSNSASNENLRIDEILNDIID-SIDFSI  305 (325)
T ss_pred             cccHHHHHHhh-cCeEEEeC-CCCHHHHHHHHHHHHHHhhhccccccc-hhhhhhcchhhhhhHHHHHHHHHH-hhhhcC
Confidence               35788888 66777733 777888888887776655544322211 0001          0122233332 22 233


Q ss_pred             CCcccHHHHHHcc
Q 036633          445 GQNGEGLKRWMDQ  457 (550)
Q Consensus       445 GaN~R~L~~~i~~  457 (550)
                      + |.|.++|+++.
T Consensus       306 ~-npR~ikr~iN~  317 (325)
T PF07693_consen  306 G-NPRDIKRFINS  317 (325)
T ss_pred             C-CHHHHHHHHHH
Confidence            5 89999999985

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PRK06921 hypothetical protein; Provisional

Probab=98.60  E-value=1.6e-07  Score=94.67  Aligned_cols=104  Identities=23%  Similarity=0.280  Sum_probs=65.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecCCCCchhhhhhHHhHHHHHHHh-CCCCeEEeccccc----
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMGNYTELESIKHFFDSLAALVKK-RPYSVVLFDKIEK----  312 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s~~~~~~~~s~liG~lt~al~~-~p~~VlllDEIek----  312 (550)
                      .+++|+||||||||+||.+|+..+..   . ....+.+...++....  ...++.+.+.+.. ....+|+||+++.    
T Consensus       118 ~~l~l~G~~G~GKThLa~aia~~l~~---~~g~~v~y~~~~~l~~~l--~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g  192 (266)
T PRK06921        118 NSIALLGQPGSGKTHLLTAAANELMR---KKGVPVLYFPFVEGFGDL--KDDFDLLEAKLNRMKKVEVLFIDDLFKPVNG  192 (266)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHhh---hcCceEEEEEHHHHHHHH--HHHHHHHHHHHHHhcCCCEEEEeccccccCC
Confidence            68999999999999999999999865   3 3455666654332111  0111222222221 2346999999943    


Q ss_pred             ---cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633          313 ---ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY  359 (550)
Q Consensus       313 ---a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~  359 (550)
                         .+.-.+..|+.+++..  .  ..        +.-+|+|||.....+.
T Consensus       193 ~e~~t~~~~~~lf~iin~R--~--~~--------~k~tIitsn~~~~el~  230 (266)
T PRK06921        193 KPRATEWQIEQMYSVLNYR--Y--LN--------HKPILISSELTIDELL  230 (266)
T ss_pred             CccCCHHHHHHHHHHHHHH--H--HC--------CCCEEEECCCCHHHHh
Confidence               4555677888888655  2  11        1226889999876654

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.60  E-value=2.6e-07  Score=95.02  Aligned_cols=127  Identities=19%  Similarity=0.152  Sum_probs=76.5

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF  289 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l  289 (550)
                      ++..+...+...+...   ..    ...+..++|+||+|||||+||.+||..+..   ...+...+.++++......+.-
T Consensus       135 ~~~~~~~~~~~fi~~~---~~----~~~~~gl~L~G~~G~GKThLa~Aia~~l~~---~g~~v~~~~~~~l~~~lk~~~~  204 (306)
T PRK08939        135 DRLDALMAALDFLEAY---PP----GEKVKGLYLYGDFGVGKSYLLAAIANELAK---KGVSSTLLHFPEFIRELKNSIS  204 (306)
T ss_pred             HHHHHHHHHHHHHHHh---hc----cCCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEEHHHHHHHHHHHHh
Confidence            4555665555555543   11    112368999999999999999999999976   4456677777665432221111


Q ss_pred             Hh---HHHHHHHhCCCCeEEeccccc--cCHHHHHHHHH-hhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          290 FD---SLAALVKKRPYSVVLFDKIEK--ANSSILNLLLK-ILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       290 iG---~lt~al~~~p~~VlllDEIek--a~~~v~~~Ll~-~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      -|   .+.+.+.+  ..||+|||+..  .++-+.+.++. +++..    +.        .+.-+|+|||...+.+..
T Consensus       205 ~~~~~~~l~~l~~--~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R----~~--------~~~~ti~TSNl~~~el~~  267 (306)
T PRK08939        205 DGSVKEKIDAVKE--APVLMLDDIGAEQMSSWVRDEVLGVILQYR----MQ--------EELPTFFTSNFDFDELEH  267 (306)
T ss_pred             cCcHHHHHHHhcC--CCEEEEecCCCccccHHHHHHHHHHHHHHH----HH--------CCCeEEEECCCCHHHHHH
Confidence            11   22233333  35999999964  45555544444 44533    11        122378999998877655

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.53  E-value=6.1e-06  Score=79.99  Aligned_cols=204  Identities=19%  Similarity=0.215  Sum_probs=130.8

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      .++|-+...+.+++...+.   ..|     .| .++||+|.-|||||++.|++...+..   ..-.++.++-.++.   .
T Consensus        61 ~l~Gvd~qk~~L~~NT~~F---~~G-----~pANnVLLwGaRGtGKSSLVKA~~~e~~~---~glrLVEV~k~dl~---~  126 (287)
T COG2607          61 DLVGVDRQKEALVRNTEQF---AEG-----LPANNVLLWGARGTGKSSLVKALLNEYAD---EGLRLVEVDKEDLA---T  126 (287)
T ss_pred             HHhCchHHHHHHHHHHHHH---HcC-----CcccceEEecCCCCChHHHHHHHHHHHHh---cCCeEEEEcHHHHh---h
Confidence            4678888888888777766   333     46 79999999999999999999999877   44457777744431   1


Q ss_pred             hhhHHhHHHHHHHhCCCC-eEEecccccc-CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh-
Q 036633          286 IKHFFDSLAALVKKRPYS-VVLFDKIEKA-NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM-  362 (550)
Q Consensus       286 ~s~liG~lt~al~~~p~~-VlllDEIeka-~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~-  362 (550)
                          +..+.+.++..|.. |||+|+.--- +.+....|-.+||.|    +.-     -..|++|.+|||.-- .+.+.. 
T Consensus       127 ----Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~----ve~-----rP~NVl~YATSNRRH-Ll~e~~~  192 (287)
T COG2607         127 ----LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGG----VEG-----RPANVLFYATSNRRH-LLPEDMK  192 (287)
T ss_pred             ----HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCC----ccc-----CCCeEEEEEecCCcc-cccHhhh
Confidence                23566777777755 7788886432 345566666677666    221     237899999999632 111111 


Q ss_pred             hhhh-------HhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHH
Q 036633          363 LTAT-------YGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVH  435 (550)
Q Consensus       363 ~~~~-------~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~  435 (550)
                      .+..       .+.+.+.+      .|-.|+.--+.|.   |.+.++...|++.....       .|+   .++++.++.
T Consensus       193 dn~~~~~eih~~eaveEKl------SlSDRFGLwL~F~---~~~Q~~YL~~V~~~a~~-------~~l---~~~~e~l~~  253 (287)
T COG2607         193 DNEGSTGEIHPSEAVEEKL------SLSDRFGLWLSFY---PCDQDEYLKIVDHYAKH-------FGL---DISDEELHA  253 (287)
T ss_pred             hCCCcccccChhHHHHHhh------chhhhcceeeccc---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHH
Confidence            1110       11222222      3678998899999   99999999999998843       444   666654443


Q ss_pred             HHhc-CcccCCCcccHHHHHHcc
Q 036633          436 IASN-AARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       436 L~~~-~~~~~GaN~R~L~~~i~~  457 (550)
                      =+-. +..+.|-+||--.++++.
T Consensus       254 eAl~WAt~rg~RSGR~A~QF~~~  276 (287)
T COG2607         254 EALQWATTRGGRSGRVAWQFIRD  276 (287)
T ss_pred             HHHHHHHhcCCCccHhHHHHHHH
Confidence            3321 112223355766666663

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.53  E-value=2.3e-07  Score=82.60  Aligned_cols=90  Identities=19%  Similarity=0.345  Sum_probs=62.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCC--CCCCceeEEecCCCCchhhh------------------hhHHhHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNN--DNDNHLIHFDMGNYTELESI------------------KHFFDSLAALVK  298 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~--~~~~~li~id~s~~~~~~~~------------------s~liG~lt~al~  298 (550)
                      ..++++||||+|||++++.+++.+....  ....+++.++++.......+                  ..+...+...+.
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~   84 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD   84 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence            6899999999999999999999873200  00347888888766632221                  112225566666


Q ss_pred             hCCCCeEEecccccc-CHHHHHHHHHhhhhc
Q 036633          299 KRPYSVVLFDKIEKA-NSSILNLLLKILKTD  328 (550)
Q Consensus       299 ~~p~~VlllDEIeka-~~~v~~~Ll~~ld~g  328 (550)
                      +....+|+|||++.+ +...++.|..+++..
T Consensus        85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~  115 (131)
T PF13401_consen   85 RRRVVLLVIDEADHLFSDEFLEFLRSLLNES  115 (131)
T ss_dssp             HCTEEEEEEETTHHHHTHHHHHHHHHHTCSC
T ss_pred             hcCCeEEEEeChHhcCCHHHHHHHHHHHhCC
Confidence            666569999999999 999999998888744

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=4e-07  Score=96.39  Aligned_cols=164  Identities=18%  Similarity=0.291  Sum_probs=99.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--------HHHHH---HHh-CCC---C
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--------SLAAL---VKK-RPY---S  303 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--------~lt~a---l~~-~p~---~  303 (550)
                      .-+||+||||||||.+||.|.+.|..   .+..+  +|..+.     .++.+|        .|.+|   -|+ .+.   -
T Consensus       257 KGiLLyGPPGTGKTLiARqIGkMLNA---rePKI--VNGPeI-----L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLH  326 (744)
T KOG0741|consen  257 KGILLYGPPGTGKTLIARQIGKMLNA---REPKI--VNGPEI-----LNKYVGESEENVRKLFADAEEEQRRLGANSGLH  326 (744)
T ss_pred             eeEEEECCCCCChhHHHHHHHHHhcC---CCCcc--cCcHHH-----HHHhhcccHHHHHHHHHhHHHHHHhhCccCCce
Confidence            57899999999999999999999977   33222  344333     344444        22222   222 222   3


Q ss_pred             eEEeccccc-------------cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhH
Q 036633          304 VVLFDKIEK-------------ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRV  370 (550)
Q Consensus       304 VlllDEIek-------------a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~  370 (550)
                      ||+|||||.             .|..|.|.||.=+|.-  .         -+.|.++|--||.-                
T Consensus       327 IIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV--e---------qLNNILVIGMTNR~----------------  379 (744)
T KOG0741|consen  327 IIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV--E---------QLNNILVIGMTNRK----------------  379 (744)
T ss_pred             EEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH--H---------hhhcEEEEeccCch----------------
Confidence            999999984             3668999999888643  3         23788888888862                


Q ss_pred             HHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcc
Q 036633          371 NEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNG  448 (550)
Q Consensus       371 ~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~  448 (550)
                           ..++++|+  +|+...+...   -.++.-..+|++.+-.+    +++++.+.-.++-+-+..+.+ .|  .|   
T Consensus       380 -----DlIDEALLRPGRlEVqmEIs---LPDE~gRlQIl~IHT~r----Mre~~~l~~dVdl~elA~lTK-Nf--SG---  441 (744)
T KOG0741|consen  380 -----DLIDEALLRPGRLEVQMEIS---LPDEKGRLQILKIHTKR----MRENNKLSADVDLKELAALTK-NF--SG---  441 (744)
T ss_pred             -----hhHHHHhcCCCceEEEEEEe---CCCccCceEEEEhhhhh----hhhcCCCCCCcCHHHHHHHhc-CC--ch---
Confidence                 23344454  7887677777   44555566666555443    333443222333333333332 22  24   


Q ss_pred             cHHHHHHcc
Q 036633          449 EGLKRWMDQ  457 (550)
Q Consensus       449 R~L~~~i~~  457 (550)
                      -+|.-++..
T Consensus       442 AEleglVks  450 (744)
T KOG0741|consen  442 AELEGLVKS  450 (744)
T ss_pred             hHHHHHHHH
Confidence            567777765

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=9.6e-07  Score=93.57  Aligned_cols=82  Identities=29%  Similarity=0.360  Sum_probs=62.6

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE----ecCCCCchhhhhhHHhHHHHHHHhCCCCeEEecccc
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF----DMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIE  311 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i----d~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIe  311 (550)
                      .| .++||.||||+|||.||-.+|....-      ||+++    ||..+++...+..+.+.|.+| .++|-+||++|+||
T Consensus       536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~F------PFvKiiSpe~miG~sEsaKc~~i~k~F~DA-YkS~lsiivvDdiE  608 (744)
T KOG0741|consen  536 SPLVSVLLEGPPGSGKTALAAKIALSSDF------PFVKIISPEDMIGLSESAKCAHIKKIFEDA-YKSPLSIIVVDDIE  608 (744)
T ss_pred             CcceEEEEecCCCCChHHHHHHHHhhcCC------CeEEEeChHHccCccHHHHHHHHHHHHHHh-hcCcceEEEEcchh
Confidence            45 89999999999999999999987555      99997    677777776666666666555 44688999999999


Q ss_pred             cc------CHHHHHHHHHhh
Q 036633          312 KA------NSSILNLLLKIL  325 (550)
Q Consensus       312 ka------~~~v~~~Ll~~l  325 (550)
                      .+      .|..-|.+||.|
T Consensus       609 rLiD~vpIGPRfSN~vlQaL  628 (744)
T KOG0741|consen  609 RLLDYVPIGPRFSNLVLQAL  628 (744)
T ss_pred             hhhcccccCchhhHHHHHHH
Confidence            75      355555555544

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.50  E-value=1.1e-07  Score=96.15  Aligned_cols=188  Identities=13%  Similarity=0.170  Sum_probs=110.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-HHHHHHHh-------CCCCeEEeccc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-SLAALVKK-------RPYSVVLFDKI  310 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-~lt~al~~-------~p~~VlllDEI  310 (550)
                      .++||+||+|||||.+++..-+.+..   ...-...+++|..+....+..++. .+.. -+.       ....|+|+|++
T Consensus        34 ~pvLl~G~~GtGKT~li~~~l~~l~~---~~~~~~~~~~s~~Tts~~~q~~ie~~l~k-~~~~~~gP~~~k~lv~fiDDl  109 (272)
T PF12775_consen   34 RPVLLVGPSGTGKTSLIQNFLSSLDS---DKYLVITINFSAQTTSNQLQKIIESKLEK-RRGRVYGPPGGKKLVLFIDDL  109 (272)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCSTT---CCEEEEEEES-TTHHHHHHHHCCCTTECE-CTTEEEEEESSSEEEEEEETT
T ss_pred             CcEEEECCCCCchhHHHHhhhccCCc---cccceeEeeccCCCCHHHHHHHHhhcEEc-CCCCCCCCCCCcEEEEEeccc
Confidence            48899999999999999886655533   221245688887764444332221 1100 000       11248999999


Q ss_pred             cccCH------HHHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhh
Q 036633          311 EKANS------SILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSL  382 (550)
Q Consensus       311 eka~~------~v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~l  382 (550)
                      .-..+      .....|.|+++.|  - +-|.  ..-..+.++.+|++.|.+..                  +..++|-|
T Consensus       110 N~p~~d~ygtq~~iElLRQ~i~~~--g-~yd~~~~~~~~i~~i~~vaa~~p~~G------------------r~~is~R~  168 (272)
T PF12775_consen  110 NMPQPDKYGTQPPIELLRQLIDYG--G-FYDRKKLEWKSIEDIQFVAAMNPTGG------------------RNPISPRF  168 (272)
T ss_dssp             T-S---TTS--HHHHHHHHHHHCS--E-EECTTTTEEEEECSEEEEEEESSTTT--------------------SHHHHH
T ss_pred             CCCCCCCCCCcCHHHHHHHHHHhc--C-cccCCCcEEEEEeeeEEEEecCCCCC------------------CCCCChHH
Confidence            75443      3678999999987  4 4443  34567788999999886431                  12356778


Q ss_pred             hhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc-cCCH-------HHHHHHHhc----Cc-ccCCCccc
Q 036633          383 LKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV-CPST-------SALVHIASN----AA-RKYGQNGE  449 (550)
Q Consensus       383 l~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l-~~~~-------~a~~~L~~~----~~-~~~GaN~R  449 (550)
                      ++.+ .++.+.   +++.+.+..|....+...-+.. .... .+ .+.+       ++...+...    .. +.|=.|.|
T Consensus       169 ~r~f-~i~~~~---~p~~~sl~~If~~il~~~l~~~-~f~~-~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlR  242 (272)
T PF12775_consen  169 LRHF-NILNIP---YPSDESLNTIFSSILQSHLKNG-GFPE-DVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLR  242 (272)
T ss_dssp             HTTE-EEEE-------TCCHHHHHHHHHHHHHTCHT-TSSG-GGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHH
T ss_pred             hhhe-EEEEec---CCChHHHHHHHHHHHhhhcccC-CCCh-HHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHH
Confidence            8888 688888   8999999999998886543221 0000 01 1112       222222221    11 44566889


Q ss_pred             HHHHHHcc
Q 036633          450 GLKRWMDQ  457 (550)
Q Consensus       450 ~L~~~i~~  457 (550)
                      +|.++++.
T Consensus       243 Dlsrv~qG  250 (272)
T PF12775_consen  243 DLSRVFQG  250 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999986

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=98.48  E-value=1.4e-06  Score=97.01  Aligned_cols=247  Identities=13%  Similarity=0.087  Sum_probs=138.4

Q ss_pred             HHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCc--CCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633          197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSR--RQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI  273 (550)
Q Consensus       197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~--~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li  273 (550)
                      ...+-..+--.|+|.+.++++|+=++--.-  .-.+.+.  -|. -++||+|.||||||.+-+.+++.+.+      .+.
T Consensus       277 ~~~l~~SiaPsIyG~e~VKkAilLqLfgGv--~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr------~vy  348 (682)
T COG1241         277 YDILIKSIAPSIYGHEDVKKAILLQLFGGV--KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR------GVY  348 (682)
T ss_pred             HHHHHHHhcccccCcHHHHHHHHHHhcCCC--cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc------eEE
Confidence            345556677889999998888776664430  0001111  133 68999999999999999999998765      111


Q ss_pred             EEecCCCCchh---hh--hhHHhH---HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC--CeEeec-
Q 036633          274 HFDMGNYTELE---SI--KHFFDS---LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG--IAAFDL-  342 (550)
Q Consensus       274 ~id~s~~~~~~---~~--s~liG~---lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--g~~vd~-  342 (550)
                      . +...-+...   ++  ....|.   =.+|+--.-.||+++||++|++..-...|..+|+.+  + ++-.  |-...+ 
T Consensus       349 t-sgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQ--t-IsIaKAGI~atLn  424 (682)
T COG1241         349 T-SGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQ--T-ISIAKAGITATLN  424 (682)
T ss_pred             E-ccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhc--E-eeecccceeeecc
Confidence            1 100000000   00  000110   011222234589999999999999999999999999  5 5554  522222 


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH--------
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET--------  414 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~--------  414 (550)
                      .+|-|++++|........      +.-+.+  .=.|++.|++|||-++...  -..+++.=..++.+.+...        
T Consensus       425 ARcsvLAAaNP~~Gryd~------~~~~~e--nI~l~~~lLSRFDLifvl~--D~~d~~~D~~ia~hil~~h~~~~~~~~  494 (682)
T COG1241         425 ARCSVLAAANPKFGRYDP------KKTVAE--NINLPAPLLSRFDLIFVLK--DDPDEEKDEEIAEHILDKHRGEEPEET  494 (682)
T ss_pred             hhhhhhhhhCCCCCcCCC------CCCHHH--hcCCChhHHhhCCeeEEec--CCCCccchHHHHHHHHHHHhccccccc
Confidence            445566666654211100      000111  1257889999999766554  1334444455555555433        


Q ss_pred             ----------------HHHh---ccCCCccccCCHHHHHHHHhcCc-cc-CC----------CcccHHHHHHcc-hhhHH
Q 036633          415 ----------------KRRN---NDSKAVIVCPSTSALVHIASNAA-RK-YG----------QNGEGLKRWMDQ-RPSAD  462 (550)
Q Consensus       415 ----------------~~~l---~~~~~~~l~~~~~a~~~L~~~~~-~~-~G----------aN~R~L~~~i~~-~~la~  462 (550)
                                      .+++   +++.+ .-.+++++.+.|.++-. .+ .+          .-.|-|..+|+- .+.|.
T Consensus       495 ~~~~~~~~~~~~~~~~lrkYI~YAR~~v-~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak  573 (682)
T COG1241         495 ISLDGVDEVEERDFELLRKYISYARKNV-TPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAK  573 (682)
T ss_pred             cccccccccccCcHHHHHHHHHHHhccC-CcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHh
Confidence                            1121   23334 56889999999987422 11 11          012667777765 44444


Q ss_pred             HHHh
Q 036633          463 HVID  466 (550)
Q Consensus       463 ~~l~  466 (550)
                      .-|+
T Consensus       574 ~rLS  577 (682)
T COG1241         574 MRLS  577 (682)
T ss_pred             hhcc
Confidence            4444

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.47  E-value=1.6e-06  Score=100.96  Aligned_cols=141  Identities=14%  Similarity=0.207  Sum_probs=107.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh---------------HHHHHHHhCCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD---------------SLAALVKKRPYS  303 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG---------------~lt~al~~~p~~  303 (550)
                      -++|+-||+.+|||++..-+|+..+.      .|+|||=-+-++   ....+|               .|.+|+|+.-  
T Consensus       889 fP~LiQGpTSSGKTSMI~yla~~tgh------kfVRINNHEHTd---lqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy--  957 (4600)
T COG5271         889 FPLLIQGPTSSGKTSMILYLARETGH------KFVRINNHEHTD---LQEYIGTYVTDDDGSLSFKEGVLVEALRRGY--  957 (4600)
T ss_pred             CcEEEecCCCCCcchHHHHHHHHhCc------cEEEecCcccch---HHHHhhceeecCCCceeeehhHHHHHHhcCc--
Confidence            58999999999999999999999988      999999665543   233455               8899998754  


Q ss_pred             eEEeccccccCHHHHHHHHHhhhhcccccc--ccC-CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCCh
Q 036633          304 VVLFDKIEKANSSILNLLLKILKTDFNRKA--TRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKP  380 (550)
Q Consensus       304 VlllDEIeka~~~v~~~Ll~~ld~g~~~~l--~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p  380 (550)
                      -|+|||..-|+.+|+.+|-++||+.  +.+  ... ...+.-.+-.+++|-|.+.---     .          ++.++.
T Consensus       958 WIVLDELNLApTDVLEaLNRLLDDN--RelfIPETqevV~PHp~F~lFATQNppg~Yg-----G----------RK~LSr 1020 (4600)
T COG5271         958 WIVLDELNLAPTDVLEALNRLLDDN--RELFIPETQEVVVPHPNFRLFATQNPPGGYG-----G----------RKGLSR 1020 (4600)
T ss_pred             EEEeeccccCcHHHHHHHHHhhccc--cceecCCcceeeccCCCeeEEeecCCCcccc-----c----------hHHHHH
Confidence            6999999999999999999999887  423  222 2333345556778878542111     1          356778


Q ss_pred             hhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          381 SLLKLLDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       381 ~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                      +|+||+ --+.|.   ...++++..|++..+
T Consensus      1021 AFRNRF-lE~hFd---dipedEle~ILh~rc 1047 (4600)
T COG5271        1021 AFRNRF-LEMHFD---DIPEDELEEILHGRC 1047 (4600)
T ss_pred             HHHhhh-Hhhhcc---cCcHHHHHHHHhccC
Confidence            899999 678999   999999999987544

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=5.4e-06  Score=91.52  Aligned_cols=164  Identities=16%  Similarity=0.255  Sum_probs=109.6

Q ss_pred             ccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch---
Q 036633          208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL---  283 (550)
Q Consensus       208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~---  283 (550)
                      ..+++..+-.++..+.-.+  -.+.. ..+- .++|++|+||+|||++.++.|..++.      +++.+||.++...   
T Consensus       403 ~~~~~~~~~~l~~vl~p~~--~~s~~-~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~------h~~evdc~el~~~s~~  473 (953)
T KOG0736|consen  403 PPGLEAKVLELVAVLSPQK--QPSGA-LLTLNPSVLLHGPPGSGKTTVVRAVASELGL------HLLEVDCYELVAESAS  473 (953)
T ss_pred             CccchHHHHHHHHHhCccc--Ccchh-ccccceEEEEeCCCCCChHHHHHHHHHHhCC------ceEeccHHHHhhcccc
Confidence            4566666665555554331  00100 1122 69999999999999999999999988      9999999988643   


Q ss_pred             hhhhhHHhHHHHHHHhCCCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCCh
Q 036633          284 ESIKHFFDSLAALVKKRPYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD  355 (550)
Q Consensus       284 ~~~s~liG~lt~al~~~p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~  355 (550)
                      |...++.-.+..+ +.++..||||-.+|-+.        -.++..+-..+...        --+.++..+|+|+|++.. 
T Consensus       474 ~~etkl~~~f~~a-~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e--------~~~~~~~~~ivv~t~~s~-  543 (953)
T KOG0736|consen  474 HTETKLQAIFSRA-RRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNE--------DFKFSCPPVIVVATTSSI-  543 (953)
T ss_pred             hhHHHHHHHHHHH-hhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcc--------cccCCCCceEEEEecccc-
Confidence            4445554444444 44455888887766432        23344443333311        112355778899988753 


Q ss_pred             HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHH
Q 036633          356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEE  413 (550)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~  413 (550)
                                          +.+++.+.+-+-..|.+.   -+++++..+|++.++..
T Consensus       544 --------------------~~lp~~i~~~f~~ei~~~---~lse~qRl~iLq~y~~~  578 (953)
T KOG0736|consen  544 --------------------EDLPADIQSLFLHEIEVP---ALSEEQRLEILQWYLNH  578 (953)
T ss_pred             --------------------ccCCHHHHHhhhhhccCC---CCCHHHHHHHHHHHHhc
Confidence                                577888888887788888   99999999999988853

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=98.39  E-value=1.8e-07  Score=97.32  Aligned_cols=194  Identities=14%  Similarity=0.131  Sum_probs=101.7

Q ss_pred             HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC--c----CCC-eeEEEeccCCCcHHHHHHHHHHHhccCCC
Q 036633          195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS--R----RQL-GLFLFAGPNCSGKAELAKAIANELYDNND  267 (550)
Q Consensus       195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~--~----~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~  267 (550)
                      +.+..+-..+--.|+|.+.++..|.=++-.      |...  +    .|. -++||+|.||||||.+.+.+++...+   
T Consensus        13 ~~~~~l~~s~aP~i~g~~~iK~aill~L~~------~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr---   83 (331)
T PF00493_consen   13 NIFDRLANSIAPSIYGHEDIKKAILLQLFG------GVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR---   83 (331)
T ss_dssp             THHHCCHHHCSSTTTT-HHHHHHHCCCCTT--------SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS---
T ss_pred             cHHHHHHHHhCCcCcCcHHHHHHHHHHHHh------ccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc---
Confidence            456677788889999998877664333322      2211  1    123 79999999999999999988766543   


Q ss_pred             CCCceeEEecCCCCchhh---hh--hHHh--H-HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeE
Q 036633          268 NDNHLIHFDMGNYTELES---IK--HFFD--S-LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA  339 (550)
Q Consensus       268 ~~~~li~id~s~~~~~~~---~s--~liG--~-lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~  339 (550)
                          -+..+...-+..+-   +.  ..-|  . -.+++-...+||+++||++|++.+..+.|+++||.|++. +..+|..
T Consensus        84 ----~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~is-i~kagi~  158 (331)
T PF00493_consen   84 ----SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTIS-IAKAGIV  158 (331)
T ss_dssp             ----EEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEE-ECTSSSE
T ss_pred             ----eEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeec-cchhhhc
Confidence                22222111110000   00  0011  0 012333345689999999999999999999999999444 4333533


Q ss_pred             eec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEe-cCCCCCCHHHHHHHHHHHHHH
Q 036633          340 FDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVI-DLAVPLLDTTRLLLREWACEE  413 (550)
Q Consensus       340 vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f-~~~~pL~~e~i~~I~~~~l~~  413 (550)
                      ..+ .+|-|++++|.........      ..+.+  .-.+++.|++|||-++.+ +   +.+.+.=..++.+.+..
T Consensus       159 ~~l~ar~svlaa~NP~~g~~~~~------~~~~~--ni~l~~~LLSRFDLif~l~D---~~d~~~D~~la~~il~~  223 (331)
T PF00493_consen  159 TTLNARCSVLAAANPKFGRYDPN------KSLSE--NINLPPPLLSRFDLIFLLRD---KPDEEEDERLAEHILDS  223 (331)
T ss_dssp             EEEE---EEEEEE--TT--S-TT------S-CGC--CT-S-CCCHCC-SEEECC-----TTT-HHHHHHHHHHHTT
T ss_pred             ccccchhhhHHHHhhhhhhcchh------hhhHH--hcccchhhHhhcCEEEEecc---ccccccccccceEEEec
Confidence            322 4566888888753221110      00000  013788999999977554 5   55655555666655543

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.38  E-value=5.8e-06  Score=90.65  Aligned_cols=209  Identities=16%  Similarity=0.213  Sum_probs=110.0

Q ss_pred             ccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC-CCCCceeE--E--ecCCCC
Q 036633          208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN-DNDNHLIH--F--DMGNYT  281 (550)
Q Consensus       208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~~li~--i--d~s~~~  281 (550)
                      +.-+..-++.|...+...   ..+    ..+ ..+||+||||||||++++.||+.+...- ....|...  -  ...+|.
T Consensus        21 LavhkkKv~eV~~wl~~~---~~~----~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~   93 (519)
T PF03215_consen   21 LAVHKKKVEEVRSWLEEM---FSG----SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFE   93 (519)
T ss_pred             hhccHHHHHHHHHHHHHH---hcc----CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccccccccccc
Confidence            344555666777777655   222    223 6999999999999999999999986410 01111110  0  000111


Q ss_pred             chh-hhhhHHh---HHHHH-HHh--------------CCCCeEEeccccccC----HHHHHHHHHhhhhccccccccCCe
Q 036633          282 ELE-SIKHFFD---SLAAL-VKK--------------RPYSVVLFDKIEKAN----SSILNLLLKILKTDFNRKATRGIA  338 (550)
Q Consensus       282 ~~~-~~s~liG---~lt~a-l~~--------------~p~~VlllDEIeka~----~~v~~~Ll~~ld~g~~~~l~d~g~  338 (550)
                      ... ....+.+   .|.+. ++.              ....|||+||+-...    ....+.|.+++..+  + .     
T Consensus        94 s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~--~-~-----  165 (519)
T PF03215_consen   94 SDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSS--R-C-----  165 (519)
T ss_pred             ccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcC--C-C-----
Confidence            000 0000111   11111 111              123599999986532    34566666666655  3 1     


Q ss_pred             EeecCCeEEEEe--CCC-ChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHH
Q 036633          339 AFDLTNTLIIMT--SDL-KDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEE  413 (550)
Q Consensus       339 ~vd~~~~iiI~T--sN~-g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~  413 (550)
                          .=.|||+|  -+. |....         ....-.....|++++++  ++ .+|.|+   |....-+.+.+.+.+..
T Consensus       166 ----~PlV~iiSe~~~~~~~~~~---------~~~~~t~~~L~~~~il~~~~i-~~I~FN---pIa~T~mkKaL~rI~~~  228 (519)
T PF03215_consen  166 ----LPLVFIISETESLSGDNSY---------RSNSFTAERLFPKEILNHPGI-TRIKFN---PIAPTFMKKALKRILKK  228 (519)
T ss_pred             ----CCEEEEEecccccCCCCcc---------cccchhhhhccCHHHHhCCCc-eEEEec---CCCHHHHHHHHHHHHHH
Confidence                02445555  111 11000         00001123578999986  45 589999   99999898888888765


Q ss_pred             HHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          414 TKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       414 ~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      -.+..... . ...-..++++.|+..+.       -+||.+|..
T Consensus       229 E~~~~~~~-~-~~p~~~~~l~~I~~~s~-------GDIRsAIn~  263 (519)
T PF03215_consen  229 EARSSSGK-N-KVPDKQSVLDSIAESSN-------GDIRSAINN  263 (519)
T ss_pred             HhhhhcCC-c-cCCChHHHHHHHHHhcC-------chHHHHHHH
Confidence            43332211 1 11222456888887421       457777774

>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]

Probab=98.36  E-value=6.1e-06  Score=89.98  Aligned_cols=220  Identities=11%  Similarity=0.104  Sum_probs=123.4

Q ss_pred             HHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC--cCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCce
Q 036633          196 RYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS--RRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHL  272 (550)
Q Consensus       196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~--~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~l  272 (550)
                      ....|.+.+.-.|+|.++.++.+.=++--..  +.....  .-+. -++||+|.||||||-+.+.+++.+.+      ..
T Consensus       419 iy~lLa~SiAPsIye~edvKkglLLqLfGGt--~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pR------g~  490 (804)
T KOG0478|consen  419 IYELLARSIAPSIYELEDVKKGLLLQLFGGT--RKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPR------GV  490 (804)
T ss_pred             HHHHHHHhhchhhhcccchhhhHHHHHhcCC--cccccccccccccceEEEecCCCcCHHHHHHHHHHhCCc------ce
Confidence            3556677788889999999988776664321  111111  1123 68999999999999999999999865      11


Q ss_pred             eEE-------ecCCCCchhh-hhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC--CeEeec
Q 036633          273 IHF-------DMGNYTELES-IKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG--IAAFDL  342 (550)
Q Consensus       273 i~i-------d~s~~~~~~~-~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--g~~vd~  342 (550)
                      +.-       -+..|..... ...++ .-++|+--..++|-.|||++|++.+..+.|+++||..  + ++-.  |--..|
T Consensus       491 yTSGkGsSavGLTayVtrd~dtkqlV-LesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQ--T-vSIAKAGII~sL  566 (804)
T KOG0478|consen  491 YTSGKGSSAVGLTAYVTKDPDTRQLV-LESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQ--T-LSIAKAGIIASL  566 (804)
T ss_pred             eecCCccchhcceeeEEecCccceee-eecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHh--h-hhHhhcceeeec
Confidence            110       0000000000 00000 1122333345689999999999999999999999988  4 4444  433322


Q ss_pred             -CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc-CCChhhhhhcccee-EecCCCCCCHHHHHHHHHHHH--------
Q 036633          343 -TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS-LFKPSLLKLLDKLV-VIDLAVPLLDTTRLLLREWAC--------  411 (550)
Q Consensus       343 -~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~-~f~p~ll~Rid~ii-~f~~~~pL~~e~i~~I~~~~l--------  411 (550)
                       -++=|++++|.-....+.         -...++. .++|.|++|||-|+ .|+   +-++..=..++.+..        
T Consensus       567 NAR~SVLAaANP~~skynp---------~k~i~eNI~LpptLLSRFDLIylllD---~~DE~~Dr~La~HivsLy~e~~~  634 (804)
T KOG0478|consen  567 NARCSVLAAANPIRSKYNP---------NKSIIENINLPPTLLSRFDLIFLLLD---KPDERSDRRLADHIVALYPETGE  634 (804)
T ss_pred             cccceeeeeeccccccCCC---------CCchhhccCCChhhhhhhcEEEEEec---CcchhHHHHHHHHHHHhcccccc
Confidence             124466666632111111         0001111 46899999998653 334   333321122222222        


Q ss_pred             -----------HHHHHHhccCCCccccCCHHHHHHHHhcC
Q 036633          412 -----------EETKRRNNDSKAVIVCPSTSALVHIASNA  440 (550)
Q Consensus       412 -----------~~~~~~l~~~~~~~l~~~~~a~~~L~~~~  440 (550)
                                 -+..-+++...+ .-.+++++...+....
T Consensus       635 ~~~~~~~d~~~lr~yi~yArk~i-~p~l~~ea~~~l~~ay  673 (804)
T KOG0478|consen  635 KQGSEAIDMNLLRDYIRYARKNI-HPALSPEASQALIQAY  673 (804)
T ss_pred             cchhHHHhHHHHHHHHHHHhccC-CccccHHHHHHHHHHh
Confidence                       122223344555 6678889888887643

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=98.35  E-value=6.4e-06  Score=86.83  Aligned_cols=141  Identities=13%  Similarity=0.243  Sum_probs=89.2

Q ss_pred             CCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEec
Q 036633          166 KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAG  245 (550)
Q Consensus       166 ~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~G  245 (550)
                      +...|.++.-+++-+..|.-...+..  ..++..|.               ++...+.+.             .++++.|
T Consensus       167 R~~FT~dEWid~LlrSiG~~P~~~~~--r~k~~~L~---------------rl~~fve~~-------------~Nli~lG  216 (449)
T TIGR02688       167 RKEFTLEEWIDVLIRSIGYEPEGFEA--RQKLLLLA---------------RLLPLVEPN-------------YNLIELG  216 (449)
T ss_pred             HhhcCHHHHHHHHHHhcCCCcccCCh--HHHHHHHH---------------hhHHHHhcC-------------CcEEEEC
Confidence            55677777777777778876665532  22222221               111223322             5999999


Q ss_pred             cCCCcHHHHHHHHHHHh-ccCCCCCCceeEEecCCCCchhhhhhHHhHHHH-HHHh-CCCCeEEeccccccC----HHHH
Q 036633          246 PNCSGKAELAKAIANEL-YDNNDNDNHLIHFDMGNYTELESIKHFFDSLAA-LVKK-RPYSVVLFDKIEKAN----SSIL  318 (550)
Q Consensus       246 p~GvGKT~lAk~la~~l-~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~-al~~-~p~~VlllDEIeka~----~~v~  318 (550)
                      |+|||||++|.+|+... ..    ..        .|   .+.+.|+..+.. .+.. ..+.+|+|||+...+    .++.
T Consensus       217 p~GTGKThla~~l~~~~a~~----sG--------~f---~T~a~Lf~~L~~~~lg~v~~~DlLI~DEvgylp~~~~~~~v  281 (449)
T TIGR02688       217 PKGTGKSYIYNNLSPYVILI----SG--------GT---ITVAKLFYNISTRQIGLVGRWDVVAFDEVATLKFAKPKELI  281 (449)
T ss_pred             CCCCCHHHHHHHHhHHHHHH----cC--------Cc---CcHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcCCchHHHH
Confidence            99999999999998772 22    00        11   145566664332 2221 345899999998843    4688


Q ss_pred             HHHHHhhhhccccccccCCeEeecCCeEEEEeCCCCh
Q 036633          319 NLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD  355 (550)
Q Consensus       319 ~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~  355 (550)
                      +.|-..|++|  . ++.++ ..--.++=++|..|...
T Consensus       282 ~imK~yMesg--~-fsRG~-~~~~a~as~vfvGNi~~  314 (449)
T TIGR02688       282 GILKNYMESG--S-FTRGD-ETKSSDASFVFLGNVPL  314 (449)
T ss_pred             HHHHHHHHhC--c-eeccc-eeeeeeeEEEEEcccCC
Confidence            9999999999  7 77762 22235566888888764

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>PF05729 NACHT: NACHT domain

Probab=98.34  E-value=7.3e-06  Score=75.52  Aligned_cols=137  Identities=16%  Similarity=0.268  Sum_probs=82.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCC---CceeEEecCCCCchh---hhhhHHh------------HHHHHHHhCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDND---NHLIHFDMGNYTELE---SIKHFFD------------SLAALVKKRP  301 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~---~~li~id~s~~~~~~---~~s~liG------------~lt~al~~~p  301 (550)
                      .++++|+||+|||++++.++..+.......   .-.+.+++..+....   ....++.            .+.......+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~   81 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK   81 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence            689999999999999999998876532111   124456666665443   2222222            1233445566


Q ss_pred             CCeEEeccccccCHH--------HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHH
Q 036633          302 YSVVLFDKIEKANSS--------ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEV  373 (550)
Q Consensus       302 ~~VlllDEIeka~~~--------v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~  373 (550)
                      ..+++||-+|.+...        ..+.|.+++...  .          +.++-+++||.......               
T Consensus        82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~--~----------~~~~~liit~r~~~~~~---------------  134 (166)
T PF05729_consen   82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA--L----------PPGVKLIITSRPRAFPD---------------  134 (166)
T ss_pred             ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc--c----------CCCCeEEEEEcCChHHH---------------
Confidence            678999999888763        334555666542  1          13444666665432110               


Q ss_pred             hccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633          374 TGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACE  412 (550)
Q Consensus       374 l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~  412 (550)
                      +...+...      ..+...   ||+++++.+.++.++.
T Consensus       135 ~~~~~~~~------~~~~l~---~~~~~~~~~~~~~~f~  164 (166)
T PF05729_consen  135 LRRRLKQA------QILELE---PFSEEDIKQYLRKYFS  164 (166)
T ss_pred             HHHhcCCC------cEEEEC---CCCHHHHHHHHHHHhh
Confidence            11122111      467788   9999999999988774

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=98.29  E-value=6.4e-06  Score=84.82  Aligned_cols=200  Identities=16%  Similarity=0.205  Sum_probs=120.9

Q ss_pred             hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633          204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~  283 (550)
                      ....++|-++++.++++.++.+   ..|+..  +..+++|.||+|+|||++++.|-+.+-.     .++..+..+...+.
T Consensus        59 f~~~~~G~~~~i~~lV~~fk~A---A~g~~~--~krIl~L~GPvg~GKSsl~~~Lk~~le~-----y~~Y~l~~~Pm~e~  128 (358)
T PF08298_consen   59 FEDEFYGMEETIERLVNYFKSA---AQGLEE--RKRILLLLGPVGGGKSSLAELLKRGLEE-----YPIYTLKGCPMHEE  128 (358)
T ss_pred             ccccccCcHHHHHHHHHHHHHH---HhccCc--cceEEEEECCCCCCHHHHHHHHHHHhhe-----EEEEEecCCccccC
Confidence            4467999999999999999987   666632  2269999999999999999999987733     12222211111100


Q ss_pred             ---------------------------------------------------------------------hhhhhHHh---
Q 036633          284 ---------------------------------------------------------------------ESIKHFFD---  291 (550)
Q Consensus       284 ---------------------------------------------------------------------~~~s~liG---  291 (550)
                                                                                           ...+.|.|   
T Consensus       129 PL~L~P~~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd  208 (358)
T PF08298_consen  129 PLHLFPKELRREFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVD  208 (358)
T ss_pred             hhhhCCHhHHHHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHH
Confidence                                                                                 01223333   


Q ss_pred             --HHHH-------------HHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChH
Q 036633          292 --SLAA-------------LVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDE  356 (550)
Q Consensus       292 --~lt~-------------al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~  356 (550)
                        .+..             .+.....|++=|=|+-|++.+.+--||.+.++|.+. .+...-.+++ +.+||..||..  
T Consensus       209 ~~kl~~~s~~dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik-~~~~~~~i~~-D~liiAhsNe~--  284 (358)
T PF08298_consen  209 IRKLAEYSESDPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIK-VDEDFGMIPF-DELIIAHSNEE--  284 (358)
T ss_pred             HHHHhhhccCCCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCcee-cCCccccccc-ceeEEecCCHH--
Confidence              1111             122222356666688899999999999999999333 2222333444 46889999931  


Q ss_pred             HHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633          357 QVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI  436 (550)
Q Consensus       357 ~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L  436 (550)
                      ...            +-......++|.+|| .+|.++  =.|+-.+=.+|-+..+.+       ..+....+.|.+++.+
T Consensus       285 E~~------------~f~~~~~~eAf~DRi-~~I~VP--Y~L~~s~E~kIY~k~~~~-------s~l~~~h~aP~~L~~a  342 (358)
T PF08298_consen  285 EYN------------KFKNNKNNEAFKDRI-EVIKVP--YCLRVSEEVKIYEKLIGK-------SDLRDAHIAPHTLEMA  342 (358)
T ss_pred             HHH------------HHhccccchhhhhhe-EEEecc--ccCCHHHHHHHHHHHhhh-------ccccccccCchHHHHH
Confidence            111            111234468899999 666664  123445555666655532       1111347788888877


Q ss_pred             Hhc
Q 036633          437 ASN  439 (550)
Q Consensus       437 ~~~  439 (550)
                      +..
T Consensus       343 A~f  345 (358)
T PF08298_consen  343 ARF  345 (358)
T ss_pred             HHH
Confidence            753

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=98.26  E-value=1.2e-05  Score=84.65  Aligned_cols=189  Identities=16%  Similarity=0.204  Sum_probs=125.0

Q ss_pred             hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCC--ceeEEecCCC
Q 036633          203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDN--HLIHFDMGNY  280 (550)
Q Consensus       203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~--~li~id~s~~  280 (550)
                      .-...++|.+.-++.+...+..++       ..+.++++.+.|-||||||.+..-+-..+..   ...  ..+.+||..+
T Consensus       147 ~~p~~l~gRe~e~~~v~~F~~~hl-------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~---~~~~~~~v~inc~sl  216 (529)
T KOG2227|consen  147 APPGTLKGRELEMDIVREFFSLHL-------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSK---SSKSPVTVYINCTSL  216 (529)
T ss_pred             CCCCCccchHHHHHHHHHHHHhhh-------hcccCcceEeeCCCCcchHHHHHHHHHhhhh---hcccceeEEEeeccc
Confidence            345789999999999999998872       3446699999999999999987755544433   222  2378899887


Q ss_pred             Cchhhh-hhHHh-----------------HHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee
Q 036633          281 TELESI-KHFFD-----------------SLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD  341 (550)
Q Consensus       281 ~~~~~~-s~liG-----------------~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd  341 (550)
                      .+..++ ..+++                 .|...... ++-=|+++||+|.+...-+..|+.+++-.  . +..      
T Consensus       217 ~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp--~-lp~------  287 (529)
T KOG2227|consen  217 TEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWP--K-LPN------  287 (529)
T ss_pred             cchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcc--c-CCc------
Confidence            776553 22222                 12222222 21238899999999888888888888766  4 321      


Q ss_pred             cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhc---cceeEecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 036633          342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLL---DKLVVIDLAVPLLDTTRLLLREWACEETKRRN  418 (550)
Q Consensus       342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Ri---d~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l  418 (550)
                       ++.++|--+|.-  .                +.+.|-|-|..|+   ..++.|.   ||+.++|.+|+...+....   
T Consensus       288 -sr~iLiGiANsl--D----------------lTdR~LprL~~~~~~~P~~l~F~---PYTk~qI~~Il~~rl~~~~---  342 (529)
T KOG2227|consen  288 -SRIILIGIANSL--D----------------LTDRFLPRLNLDLTIKPKLLVFP---PYTKDQIVEILQQRLSEES---  342 (529)
T ss_pred             -ceeeeeeehhhh--h----------------HHHHHhhhhhhccCCCCceeeec---CCCHHHHHHHHHHHHhccc---
Confidence             333444434421  0                1234444454444   3589999   9999999999998885411   


Q ss_pred             ccCCCccccCCHHHHHHHHhcCc
Q 036633          419 NDSKAVIVCPSTSALVHIASNAA  441 (550)
Q Consensus       419 ~~~~~~~l~~~~~a~~~L~~~~~  441 (550)
                            +..+-+.+++.++....
T Consensus       343 ------t~~~~~~Aie~~ArKva  359 (529)
T KOG2227|consen  343 ------TSIFLNAAIELCARKVA  359 (529)
T ss_pred             ------ccccchHHHHHHHHHhc
Confidence                  33455678888888665

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=98.20  E-value=3.4e-05  Score=75.49  Aligned_cols=133  Identities=17%  Similarity=0.169  Sum_probs=91.5

Q ss_pred             eeEEEeccCC-CcHHHHHHHHHHHhccCC---CCCCceeEEecCCCCchhhhhhHHh-----HHHHHHHhCC----CCeE
Q 036633          239 GLFLFAGPNC-SGKAELAKAIANELYDNN---DNDNHLIHFDMGNYTELESIKHFFD-----SLAALVKKRP----YSVV  305 (550)
Q Consensus       239 ~~lLf~Gp~G-vGKT~lAk~la~~l~~~~---~~~~~li~id~s~~~~~~~~s~liG-----~lt~al~~~p----~~Vl  305 (550)
                      ...||.|..+ +||..++..+++.++..+   .....+..+.-.. .. ..-+..+|     .+.+.+..+|    +.|+
T Consensus        16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~-~~-~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi   93 (263)
T PRK06581         16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARET-SA-TSNAKNISIEQIRKLQDFLSKTSAISGYKVA   93 (263)
T ss_pred             heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccc-cc-cccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence            7999999998 999999999999987632   1122233332110 00 00012233     4445554444    5699


Q ss_pred             EeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhh
Q 036633          306 LFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKL  385 (550)
Q Consensus       306 llDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~R  385 (550)
                      +++++|++++...|.||++||+.  .           .+++||++|+..                     ....|-++||
T Consensus        94 II~~ae~mt~~AANALLKtLEEP--P-----------~~t~fILit~~~---------------------~~LLpTIrSR  139 (263)
T PRK06581         94 IIYSAELMNLNAANSCLKILEDA--P-----------KNSYIFLITSRA---------------------ASIISTIRSR  139 (263)
T ss_pred             EEechHHhCHHHHHHHHHhhcCC--C-----------CCeEEEEEeCCh---------------------hhCchhHhhc
Confidence            99999999999999999999998  6           678888866543                     3566789999


Q ss_pred             ccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          386 LDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       386 id~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                      | ..+.|.   +.......++...++
T Consensus       140 C-q~i~~~---~p~~~~~~e~~~~~~  161 (263)
T PRK06581        140 C-FKINVR---SSILHAYNELYSQFI  161 (263)
T ss_pred             e-EEEeCC---CCCHHHHHHHHHHhc
Confidence            9 899999   666655555554444

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.16  E-value=1.9e-06  Score=74.68  Aligned_cols=96  Identities=21%  Similarity=0.322  Sum_probs=59.4

Q ss_pred             EEEeccCCCcHHHHHHHHHHHhccCC--CCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHH--
Q 036633          241 FLFAGPNCSGKAELAKAIANELYDNN--DNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSS--  316 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~~~~--~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~--  316 (550)
                      +.|+||||+|||++|+.|++.+...-  .....++..+..        ..+    -..-+  ...++++||+......  
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~--------~~~----w~gY~--~q~vvi~DD~~~~~~~~~   66 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPG--------DKF----WDGYQ--GQPVVIIDDFGQDNDGYN   66 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCc--------cch----hhccC--CCcEEEEeecCccccccc
Confidence            47899999999999999998887510  011122221110        000    11111  2259999999888754  


Q ss_pred             --HHHHHHHhhhhccccccccC-----CeEeecCCeEEEEeCCC
Q 036633          317 --ILNLLLKILKTDFNRKATRG-----IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       317 --v~~~Ll~~ld~g~~~~l~d~-----g~~vd~~~~iiI~TsN~  353 (550)
                        ....|+++++..  . +.-.     .+..-|.--+||+|||.
T Consensus        67 ~~~~~~l~~l~s~~--~-~~~~~a~~~~K~~~~~s~~vi~tsN~  107 (107)
T PF00910_consen   67 YSDESELIRLISSN--P-FQPNMADLEDKGTPFNSKLVIITSNF  107 (107)
T ss_pred             hHHHHHHHHHHhcC--C-cccccccHhhCCCccCCCEEEEcCCC
Confidence              788899999877  4 3332     12245555688999984

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.14  E-value=2.2e-05  Score=79.60  Aligned_cols=148  Identities=20%  Similarity=0.291  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-hhhHH
Q 036633          212 NDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-IKHFF  290 (550)
Q Consensus       212 ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-~s~li  290 (550)
                      +.-+++|...+...   .      +...++.++|++|+|||++|..+++.....+ .-+..+.++++....... ...+.
T Consensus         2 e~~~~~l~~~L~~~---~------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~-~f~~v~wv~~~~~~~~~~~~~~i~   71 (287)
T PF00931_consen    2 EKEIEKLKDWLLDN---S------NEVRVVAIVGMGGIGKTTLARQVARDLRIKN-RFDGVIWVSLSKNPSLEQLLEQIL   71 (287)
T ss_dssp             HHHHHHHHHHHHTT---T------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCC-CCTEEEEEEEES-SCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhCC---C------CCeEEEEEEcCCcCCcceeeeeccccccccc-cccccccccccccccccccccccc
Confidence            45667777777764   1      2338999999999999999999997732100 223455666665432211 11111


Q ss_pred             --------------------hHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEe
Q 036633          291 --------------------DSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMT  350 (550)
Q Consensus       291 --------------------G~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~T  350 (550)
                                          ..+.+.++.+ ..+|+||+++...  .++.+...+..+  .           .++.||+|
T Consensus        72 ~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~LlVlDdv~~~~--~~~~l~~~~~~~--~-----------~~~kilvT  135 (287)
T PF00931_consen   72 RQLGEPDSSISDPKDIEELQDQLRELLKDK-RCLLVLDDVWDEE--DLEELREPLPSF--S-----------SGSKILVT  135 (287)
T ss_dssp             HHHTCC-STSSCCSSHHHHHHHHHHHHCCT-SEEEEEEEE-SHH--HH-------HCH--H-----------SS-EEEEE
T ss_pred             ccccccccccccccccccccccchhhhccc-cceeeeeeecccc--cccccccccccc--c-----------cccccccc
Confidence                                1334444445 4799999998544  444444444332  1           24557778


Q ss_pred             CCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          351 SDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       351 sN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                      |....                      ... ..+.-+..+.+.   +|+.++-..++....
T Consensus       136 TR~~~----------------------v~~-~~~~~~~~~~l~---~L~~~ea~~L~~~~~  170 (287)
T PF00931_consen  136 TRDRS----------------------VAG-SLGGTDKVIELE---PLSEEEALELFKKRA  170 (287)
T ss_dssp             ESCGG----------------------GGT-THHSCEEEEECS---S--HHHHHHHHHHHH
T ss_pred             ccccc----------------------ccc-cccccccccccc---ccccccccccccccc
Confidence            75311                      000 111113678888   999999888877665

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PHA00729 NTP-binding motif containing protein

Probab=98.12  E-value=2.8e-05  Score=75.91  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=23.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .+++++||||||||++|.+|++.+.
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999999874

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.11  E-value=0.00024  Score=71.99  Aligned_cols=242  Identities=14%  Similarity=0.123  Sum_probs=132.0

Q ss_pred             CccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC--CCeeEEEe
Q 036633          167 LAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR--QLGLFLFA  244 (550)
Q Consensus       167 ~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~--~p~~lLf~  244 (550)
                      +.|+-.++..-+..+...|       +.+++..   .-..+.||-..|.+.+.. +...      +..|.  ++.++|++
T Consensus         5 ~~~d~~HL~~~~~~~~~l~-------~~eRI~~---i~~~rWIgY~~A~~~L~~-L~~L------l~~P~~~Rmp~lLiv   67 (302)
T PF05621_consen    5 PIVDYSHLHPDARELLQLS-------DEERIAY---IRADRWIGYPRAKEALDR-LEEL------LEYPKRHRMPNLLIV   67 (302)
T ss_pred             cccchhhcCHHHHHHHhcC-------HHHHHHH---HhcCCeecCHHHHHHHHH-HHHH------HhCCcccCCCceEEe
Confidence            3455555555555444443       2344433   346889999988755433 2221      22343  33899999


Q ss_pred             ccCCCcHHHHHHHHHHHhccCC---CCCCceeEEecCCCCchhhh-hhH---Hh--------------HHHHHHHhCCCC
Q 036633          245 GPNCSGKAELAKAIANELYDNN---DNDNHLIHFDMGNYTELESI-KHF---FD--------------SLAALVKKRPYS  303 (550)
Q Consensus       245 Gp~GvGKT~lAk~la~~l~~~~---~~~~~li~id~s~~~~~~~~-s~l---iG--------------~lt~al~~~p~~  303 (550)
                      |+||.|||++++...+.-....   ...-|++.+.|..-.+.... ..+   +|              .....++...-.
T Consensus        68 G~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vr  147 (302)
T PF05621_consen   68 GDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVR  147 (302)
T ss_pred             cCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCc
Confidence            9999999999999987654321   12237888888665543321 111   12              233455666668


Q ss_pred             eEEecccccc---CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCCh
Q 036633          304 VVLFDKIEKA---NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKP  380 (550)
Q Consensus       304 VlllDEIeka---~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p  380 (550)
                      +|+|||++.+   +..-|..++.+|..     +   |.....+   ||+.   |......            ++  .=+|
T Consensus       148 mLIIDE~H~lLaGs~~~qr~~Ln~LK~-----L---~NeL~ip---iV~v---Gt~~A~~------------al--~~D~  199 (302)
T PF05621_consen  148 MLIIDEFHNLLAGSYRKQREFLNALKF-----L---GNELQIP---IVGV---GTREAYR------------AL--RTDP  199 (302)
T ss_pred             EEEeechHHHhcccHHHHHHHHHHHHH-----H---hhccCCC---eEEe---ccHHHHH------------Hh--ccCH
Confidence            9999999874   33445555555431     1   1111111   5553   3222211            11  1257


Q ss_pred             hhhhhccceeEecCCCCCCH-HHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcchh
Q 036633          381 SLLKLLDKLVVIDLAVPLLD-TTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRP  459 (550)
Q Consensus       381 ~ll~Rid~ii~f~~~~pL~~-e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~~~  459 (550)
                      .+-+|+ ..+..+   +... ++...++    ..+...+--..-..+ -+++...+|...+-   | ++-.+.+++.. .
T Consensus       200 QLa~RF-~~~~Lp---~W~~d~ef~~LL----~s~e~~LPLr~~S~l-~~~~la~~i~~~s~---G-~iG~l~~ll~~-a  265 (302)
T PF05621_consen  200 QLASRF-EPFELP---RWELDEEFRRLL----ASFERALPLRKPSNL-ASPELARRIHERSE---G-LIGELSRLLNA-A  265 (302)
T ss_pred             HHHhcc-CCccCC---CCCCCcHHHHHH----HHHHHhCCCCCCCCC-CCHHHHHHHHHHcC---C-chHHHHHHHHH-H
Confidence            899999 566666   5554 4454443    334444321111012 35566677776443   5 67778888886 3


Q ss_pred             hHHHHHhh
Q 036633          460 SADHVIDK  467 (550)
Q Consensus       460 la~~~l~~  467 (550)
                      -..++-+|
T Consensus       266 A~~AI~sG  273 (302)
T PF05621_consen  266 AIAAIRSG  273 (302)
T ss_pred             HHHHHhcC
Confidence            33444443

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=98.11  E-value=2.3e-05  Score=86.12  Aligned_cols=205  Identities=13%  Similarity=0.137  Sum_probs=134.6

Q ss_pred             hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccC---C-CCCCceeEEecC
Q 036633          204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDN---N-DNDNHLIHFDMG  278 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~---~-~~~~~li~id~s  278 (550)
                      ....+-+.+.-...|...++..      +.. ... +.|.+.|-||||||.+...+-+.|-..   + ...=.++.||.-
T Consensus       394 vp~sLpcRe~E~~~I~~f~~~~------i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm  466 (767)
T KOG1514|consen  394 VPESLPCRENEFSEIEDFLRSF------ISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL  466 (767)
T ss_pred             ccccccchhHHHHHHHHHHHhh------cCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce
Confidence            4567788888888888887766      322 223 589999999999999999988877521   1 133356778877


Q ss_pred             CCCchhhhhhHH-----h------HHHHHHH--------hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeE
Q 036633          279 NYTELESIKHFF-----D------SLAALVK--------KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAA  339 (550)
Q Consensus       279 ~~~~~~~~s~li-----G------~lt~al~--------~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~  339 (550)
                      .+.....+...|     |      .-.++++        .++-.||++||.|-+-..-|++|+.+++-.  . ...    
T Consensus       467 ~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp--t-~~~----  539 (767)
T KOG1514|consen  467 RLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP--T-LKN----  539 (767)
T ss_pred             eecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC--c-CCC----
Confidence            777665543222     1      1111121        233469999999999888899999999876  4 433    


Q ss_pred             eecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc-ceeEecCCCCCCHHHHHHHHHHHHHHHHHHh
Q 036633          340 FDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD-KLVVIDLAVPLLDTTRLLLREWACEETKRRN  418 (550)
Q Consensus       340 vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid-~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l  418 (550)
                         +..+||+-+|-..                 .-++.|.+-.-+|++ .-+.|.   |++.+++.+|+...|..+    
T Consensus       540 ---sKLvvi~IaNTmd-----------------lPEr~l~nrvsSRlg~tRi~F~---pYth~qLq~Ii~~RL~~~----  592 (767)
T KOG1514|consen  540 ---SKLVVIAIANTMD-----------------LPERLLMNRVSSRLGLTRICFQ---PYTHEQLQEIISARLKGL----  592 (767)
T ss_pred             ---CceEEEEeccccc-----------------CHHHHhccchhhhccceeeecC---CCCHHHHHHHHHHhhcch----
Confidence               4456677666421                 001233333446664 358999   999999999999888542    


Q ss_pred             ccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          419 NDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       419 ~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                             -.|++++.+.++.+-..-.| ..|-...++++
T Consensus       593 -------~~f~~~aielvarkVAavSG-DaRraldic~R  623 (767)
T KOG1514|consen  593 -------DAFENKAIELVARKVAAVSG-DARRALDICRR  623 (767)
T ss_pred             -------hhcchhHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence                   25688898888875442234 22655555555

>PHA02774 E1; Provisional

Probab=98.10  E-value=8e-06  Score=88.99  Aligned_cols=122  Identities=15%  Similarity=0.221  Sum_probs=75.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEecccccc-CHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKA-NSSI  317 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka-~~~v  317 (550)
                      ..++|+||||||||.+|-+|.+.+.+   .  .+..+|...       .-.++.|.++      .|++||++-.. ..-+
T Consensus       435 nciv~~GPP~TGKS~fa~sL~~~L~G---~--vi~fvN~~s-------~FwLqpl~d~------ki~vlDD~t~~~w~y~  496 (613)
T PHA02774        435 NCLVIYGPPDTGKSMFCMSLIKFLKG---K--VISFVNSKS-------HFWLQPLADA------KIALLDDATHPCWDYI  496 (613)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC---C--EEEEEECcc-------ccccchhccC------CEEEEecCcchHHHHH
Confidence            69999999999999999999999976   1  233355311       0112222322      59999999333 2234


Q ss_pred             HHHHHHhhhhccccccccC---CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecC
Q 036633          318 LNLLLKILKTDFNRKATRG---IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDL  394 (550)
Q Consensus       318 ~~~Ll~~ld~g~~~~l~d~---g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~  394 (550)
                      ...|..+|+..  . +.-.   ...+..+..-+|.|||.+....                 ..| ..|-+|+ .++.|.-
T Consensus       497 d~~Lrn~LdG~--~-v~lD~Khk~~~q~k~pPlIITSN~d~~~~-----------------~~~-~yL~sRi-~~f~F~n  554 (613)
T PHA02774        497 DTYLRNALDGN--P-VSIDCKHKAPVQIKCPPLLITSNIDVKAE-----------------DRY-KYLHSRI-TVFEFPN  554 (613)
T ss_pred             HHHHHHHcCCC--c-ceeeecccCcccccCCCEEEecCCCcccc-----------------hhh-HHhhhhE-EEEECCC
Confidence            44666666554  2 2222   2334445566889999865331                 122 2366899 7888887


Q ss_pred             CCCCCH
Q 036633          395 AVPLLD  400 (550)
Q Consensus       395 ~~pL~~  400 (550)
                      |-||+.
T Consensus       555 ~~P~d~  560 (613)
T PHA02774        555 PFPLDE  560 (613)
T ss_pred             CCCcCC
Confidence            777764

>PRK14700 recombination factor protein RarA; Provisional

Probab=98.02  E-value=1.1e-05  Score=81.36  Aligned_cols=109  Identities=11%  Similarity=-0.010  Sum_probs=78.8

Q ss_pred             cCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHH
Q 036633          376 SLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKR  453 (550)
Q Consensus       376 ~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~  453 (550)
                      +.|  +|++++|| .++.|.   ||+.+++..++.+.+.. ...+..  . .+.++++++++|+..+-   | -+|-.-+
T Consensus        19 P~f~vn~ALlSR~-~v~~l~---~L~~~di~~il~ral~~-~~~~~~--~-~~~i~~~al~~ia~~a~---G-DaR~aLN   86 (300)
T PRK14700         19 PTYYLNDALVSRL-FILRLK---RLSLVATQKLIEKALSQ-DEVLAK--H-KFKIDDGLYNAMHNYNE---G-DCRKILN   86 (300)
T ss_pred             ccceecHhhhhhh-heeeec---CCCHHHHHHHHHHHHHh-hhccCC--c-CCCcCHHHHHHHHHhcC---C-HHHHHHH
Confidence            355  89999999 899999   99999999999999976 222222  2 56899999999998653   3 2254444


Q ss_pred             HHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCccccc
Q 036633          454 WMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWW  503 (550)
Q Consensus       454 ~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~  503 (550)
                      .++. .+  .+ .   .+.+...|+.+..+...+...+.||++|+.||+.
T Consensus        87 ~LE~-a~--~~-~---~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~  129 (300)
T PRK14700         87 LLER-MF--LI-S---TRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQ  129 (300)
T ss_pred             HHHH-HH--hh-c---cccCCCccCHHHHHHHHhHHHhcccCCcchhHHH
Confidence            4442 11  11 1   1112235788888888888999999999999975

>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]

Probab=98.02  E-value=2.9e-05  Score=84.27  Aligned_cols=198  Identities=10%  Similarity=0.065  Sum_probs=112.2

Q ss_pred             HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633          195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI  273 (550)
Q Consensus       195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li  273 (550)
                      ..+.+|-..|--.|+|++.++..|.-.+--.-.+.++-.-+-|. .++|++|.||+||+-+.++.+..+.+      .++
T Consensus       334 nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR------~vY  407 (764)
T KOG0480|consen  334 NLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR------SVY  407 (764)
T ss_pred             hHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc------ceE
Confidence            45677788888999999999988877664331112331223344 79999999999999999999998866      221


Q ss_pred             EEecCCCCch-h-hhh----hHHhHH---HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec-C
Q 036633          274 HFDMGNYTEL-E-SIK----HFFDSL---AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL-T  343 (550)
Q Consensus       274 ~id~s~~~~~-~-~~s----~liG~l---t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~-~  343 (550)
                      .  ++..+.. . +++    .--|.+   .+|+--.-.+|-.|||+||++-.-|.++++.||...+. +.-.|....+ .
T Consensus       408 t--sGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtIS-IaKAGv~aTLnA  484 (764)
T KOG0480|consen  408 T--SGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTIS-IAKAGVVATLNA  484 (764)
T ss_pred             e--cCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheeh-heecceEEeecc
Confidence            1  1111100 0 000    000111   12222334589999999999998899999999998333 3222432221 1


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                      ++-|++++|.-....++      ..-+.+.  =.|++++++|||-++.+.  -..++..=..|..+.+
T Consensus       485 RtSIlAAANPv~GhYdR------~ktl~eN--i~msApimSRFDL~FiLl--D~~nE~~D~~ia~hIl  542 (764)
T KOG0480|consen  485 RTSILAAANPVGGHYDR------KKTLREN--INMSAPIMSRFDLFFILL--DDCNEVVDYAIARHIL  542 (764)
T ss_pred             hhhhhhhcCCcCCcccc------ccchhhh--cCCCchhhhhhcEEEEEe--cCCchHHHHHHHHHHH
Confidence            23345555542111110      0011111  147899999999654443  0444443344444443

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.02  E-value=0.00045  Score=73.20  Aligned_cols=113  Identities=19%  Similarity=0.276  Sum_probs=68.2

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCCCceeEEecCCCCchhh-----hhhHHh----------HHHHHHHh-
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNN-DNDNHLIHFDMGNYTELES-----IKHFFD----------SLAALVKK-  299 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~~li~id~s~~~~~~~-----~s~liG----------~lt~al~~-  299 (550)
                      +|.+++|+||+|||||+++.-||..+.... .....+.-+++..|.....     ....+|          .+..++.+ 
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~  252 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS  252 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence            568999999999999999999998764210 0123444455555542211     112122          34444333 


Q ss_pred             CCCCeEEeccccccCHHH--HHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          300 RPYSVVLFDKIEKANSSI--LNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       300 ~p~~VlllDEIeka~~~v--~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      ..+.+|++|.+.+.+.+.  +..+.++++..  . .        -..+++++.++.+...+..
T Consensus       253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~--~-~--------~~e~~LVlsat~~~~~~~~  304 (388)
T PRK12723        253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNAC--G-R--------DAEFHLAVSSTTKTSDVKE  304 (388)
T ss_pred             CCCCEEEEcCCCCCccCHHHHHHHHHHHHhc--C-C--------CCeEEEEEcCCCCHHHHHH
Confidence            567899999999998653  34555555433  1 0        0246788888877655543

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.99  E-value=0.00026  Score=75.67  Aligned_cols=105  Identities=11%  Similarity=0.233  Sum_probs=64.1

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH------Hh-------------H-HHHH
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF------FD-------------S-LAAL  296 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l------iG-------------~-lt~a  296 (550)
                      +|.+++|+||+|+|||+++..||..+..   ......-+++..|.. .+...|      .|             . ..++
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~---~G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~  174 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR---KGFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEG  174 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHH
Confidence            4589999999999999999999988755   334566667666542 111111      11             0 1122


Q ss_pred             ---HHhCCCCeEEeccccccCHH--HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHH
Q 036633          297 ---VKKRPYSVVLFDKIEKANSS--ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQ  357 (550)
Q Consensus       297 ---l~~~p~~VlllDEIeka~~~--v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~  357 (550)
                         ++...+.+||+|=....+.+  ....|.++.+..            +...+++|+.+..|.+.
T Consensus       175 l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~------------~p~e~lLVlda~~Gq~a  228 (429)
T TIGR01425       175 VEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAI------------QPDNIIFVMDGSIGQAA  228 (429)
T ss_pred             HHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhc------------CCcEEEEEeccccChhH
Confidence               23457899999999877653  444444443211            12346677777666443

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.95  E-value=9.4e-05  Score=79.34  Aligned_cols=148  Identities=16%  Similarity=0.196  Sum_probs=78.9

Q ss_pred             cCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-----------HHHHH------
Q 036633          235 RRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-----------SLAAL------  296 (550)
Q Consensus       235 ~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-----------~lt~a------  296 (550)
                      |+-+ .++|++||+|+|||++.+.|++.++-.-..+.+-+-+...++  .|..+...+           .|.+.      
T Consensus       106 ~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~--~h~~t~~~~~~~~s~L~~fesFler~~kyg~  183 (634)
T KOG1970|consen  106 PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPEN--LHNETSFLMFPYQSQLAVFESFLLRATKYGS  183 (634)
T ss_pred             cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccccc--ccccchhcccchhhHHHHHHHHHHHHHhhch
Confidence            3344 699999999999999999999998651100111111111121  122221111           11111      


Q ss_pred             HHh------CCCCeEEeccccccC-----HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhh
Q 036633          297 VKK------RPYSVVLFDKIEKAN-----SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTA  365 (550)
Q Consensus       297 l~~------~p~~VlllDEIeka~-----~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~  365 (550)
                      +..      ....+||+||+-.+.     ...++.|..+...|  . +         . .||++| +.-....+     .
T Consensus       184 l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g--~-~---------P-lIf~iT-d~~~~g~n-----n  244 (634)
T KOG1970|consen  184 LQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIG--R-C---------P-LIFIIT-DSLSNGNN-----N  244 (634)
T ss_pred             hhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcC--C-C---------c-EEEEEe-ccccCCCc-----c
Confidence            111      112389999985443     23556666566666  4 2         2 334443 32211100     0


Q ss_pred             hHhhHHHHhccCCChh--hhhhccceeEecCCCCCCHHHHHHHHHHHHHHHH
Q 036633          366 TYGRVNEVTGSLFKPS--LLKLLDKLVVIDLAVPLLDTTRLLLREWACEETK  415 (550)
Q Consensus       366 ~~~~~~~~l~~~f~p~--ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~  415 (550)
                      .        ...|+.+  ...|+ ..|.|+   |....-+.+.+.+.+....
T Consensus       245 q--------~rlf~~d~q~~~ri-~~IsFN---PIa~T~MKK~L~ric~~e~  284 (634)
T KOG1970|consen  245 Q--------DRLFPKDIQEEPRI-SNISFN---PIAPTIMKKFLKRICRIEA  284 (634)
T ss_pred             h--------hhhchhhhhhccCc-ceEeec---CCcHHHHHHHHHHHHHHhc
Confidence            0        1234333  34788 589999   9999988888888776533

>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]

Probab=97.88  E-value=1e-05  Score=87.30  Aligned_cols=175  Identities=13%  Similarity=0.128  Sum_probs=97.5

Q ss_pred             hhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC-
Q 036633          201 QGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG-  278 (550)
Q Consensus       201 ~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s-  278 (550)
                      -..+--.|+|+..++.+|+-++.....+--|-...-|. -++||+|.|||||+-+.|-.++...+      .++.---+ 
T Consensus       444 iaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~R------AV~tTGqGA  517 (854)
T KOG0477|consen  444 IASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPR------AVFTTGQGA  517 (854)
T ss_pred             HHhhCchhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcc------eeEeccCCc
Confidence            33455679999999999888876541101111111133 68999999999999999999988765      44332211 


Q ss_pred             ------CCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC--CeEeec-CCeEEEE
Q 036633          279 ------NYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG--IAAFDL-TNTLIIM  349 (550)
Q Consensus       279 ------~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--g~~vd~-~~~iiI~  349 (550)
                            .+..++.+++-.-.=.+|+--.-.+|-+|||++|++..=...+-..++..  . ++-+  |-...+ ..|.+|+
T Consensus       518 SavGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQ--S-ISISKAGIVtsLqArctvIA  594 (854)
T KOG0477|consen  518 SAVGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQ--S-ISISKAGIVTSLQARCTVIA  594 (854)
T ss_pred             cccceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhc--c-hhhhhhhHHHHHHhhhhhhe
Confidence                  11111111100000011111223479999999999987666777777766  3 3333  322211 3467899


Q ss_pred             eCCCChHHHHHhhhhhhHhhHHHHhc-cCCChhhhhhccceeEec
Q 036633          350 TSDLKDEQVYEVMLTATYGRVNEVTG-SLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       350 TsN~g~~~~~~~~~~~~~~~~~~~l~-~~f~p~ll~Rid~ii~f~  393 (550)
                      ++|.-....+.         ...-.+ =.+...+++|+|..++..
T Consensus       595 AanPigGRY~~---------s~tFaqNV~ltePIlSRFDiLcVvk  630 (854)
T KOG0477|consen  595 AANPIGGRYNP---------SLTFAQNVDLTEPILSRFDILCVVK  630 (854)
T ss_pred             ecCCCCCccCC---------ccchhhccccccchhhhcceeeeee
Confidence            99972211110         000000 023445999999776665

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.86  E-value=7.3e-05  Score=68.33  Aligned_cols=38  Identities=29%  Similarity=0.432  Sum_probs=30.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .++++||||+|||+++..++..+..   ...+.+.+++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~   38 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEE   38 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcc
Confidence            3689999999999999999988854   4456777766544

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.83  E-value=0.00037  Score=73.33  Aligned_cols=89  Identities=10%  Similarity=0.207  Sum_probs=59.9

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh----------------HHHHHHHh
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD----------------SLAALVKK  299 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG----------------~lt~al~~  299 (550)
                      ++|..++|+||+|+|||+++..||..+..   ....+..+++..|. ..++..|..                .+..++..
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~---~GkkVglI~aDt~R-iaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~  314 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSR-IGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY  314 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEEecCCcc-hHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHH
Confidence            35678999999999999999999998876   44456666766664 222222221                34444432


Q ss_pred             ----CCCCeEEeccccccCH--HHHHHHHHhhhhc
Q 036633          300 ----RPYSVVLFDKIEKANS--SILNLLLKILKTD  328 (550)
Q Consensus       300 ----~p~~VlllDEIeka~~--~v~~~Ll~~ld~g  328 (550)
                          ..+.+||+|-....+.  .....|.++++..
T Consensus       315 lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~  349 (436)
T PRK11889        315 FKEEARVDYILIDTAGKNYRASETVEEMIETMGQV  349 (436)
T ss_pred             HHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhc
Confidence                3578999999988874  4456666666543

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.83  E-value=0.0017  Score=69.97  Aligned_cols=107  Identities=15%  Similarity=0.295  Sum_probs=66.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc--cCCCCCCceeEEecCCCCchh-----hhhhHHh----------HHHHHHHh-C
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY--DNNDNDNHLIHFDMGNYTELE-----SIKHFFD----------SLAALVKK-R  300 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~--~~~~~~~~li~id~s~~~~~~-----~~s~liG----------~lt~al~~-~  300 (550)
                      .+++|+||+|||||+++..||..+.  .   ....+..+++..|....     ......|          .+...+.. .
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~---~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~  298 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAARYALLY---GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR  298 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence            6899999999999999999887764  2   23466667776664211     0111122          34444443 4


Q ss_pred             CCCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633          301 PYSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY  359 (550)
Q Consensus       301 p~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~  359 (550)
                      .+.+||+|-....+  +.....|.++++..  . .        --.+++|++++.+...+.
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~--~-~--------~~~~~LVl~a~~~~~~l~  348 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFS--G-E--------PIDVYLVLSATTKYEDLK  348 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhcc--C-C--------CCeEEEEEECCCCHHHHH
Confidence            57899999887654  44556666676622  1 0        024567888888765543

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.82  E-value=0.00021  Score=68.86  Aligned_cols=107  Identities=16%  Similarity=0.274  Sum_probs=64.3

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh-----hhhhHHh--------------HHHHHH-
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE-----SIKHFFD--------------SLAALV-  297 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~-----~~s~liG--------------~lt~al-  297 (550)
                      |.+++|+||+|||||+++--||..+..   ....+.-+.+..|.-..     ...+.+|              .+.+++ 
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~---~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~   77 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKL---KGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE   77 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhh---ccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence            568999999999999988888887765   34444444444454221     1223333              122233 


Q ss_pred             --HhCCCCeEEeccccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633          298 --KKRPYSVVLFDKIEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY  359 (550)
Q Consensus       298 --~~~p~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~  359 (550)
                        +...+.+||+|=....+.  +....|.++++.-  .          -..+++++.++.+.+.+.
T Consensus        78 ~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~--~----------~~~~~LVlsa~~~~~~~~  131 (196)
T PF00448_consen   78 KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL--N----------PDEVHLVLSATMGQEDLE  131 (196)
T ss_dssp             HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH--S----------SSEEEEEEEGGGGGHHHH
T ss_pred             HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc--C----------CccceEEEecccChHHHH
Confidence              346678999999988874  3444554444432  1          134568888888766553

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.80  E-value=7.4e-05  Score=72.08  Aligned_cols=85  Identities=24%  Similarity=0.443  Sum_probs=54.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC-CCCchh------------hhhhHHhHHHHHHHhCCCCeE
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG-NYTELE------------SIKHFFDSLAALVKKRPYSVV  305 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s-~~~~~~------------~~s~liG~lt~al~~~p~~Vl  305 (550)
                      |.++++||||+|||++++++...+...  ....++.+.-. ++....            ....+...+..+++..| .++
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~p-d~i   78 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDP-DVI   78 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCc-CEE
Confidence            578999999999999999998887531  11122222111 111100            00112225566777777 799


Q ss_pred             EeccccccCHHHHHHHHHhhhhc
Q 036633          306 LFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       306 llDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      ++||+-  +++....+++....|
T Consensus        79 i~gEir--d~e~~~~~l~~a~~G   99 (198)
T cd01131          79 LVGEMR--DLETIRLALTAAETG   99 (198)
T ss_pred             EEcCCC--CHHHHHHHHHHHHcC
Confidence            999995  677777778888777

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=97.78  E-value=0.00098  Score=65.64  Aligned_cols=162  Identities=21%  Similarity=0.226  Sum_probs=100.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-------------------HHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-------------------SLAALVKK  299 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-------------------~lt~al~~  299 (550)
                      +.+.++|+.|+|||.++|++...+.+   +....+.+|-..++.......++-                   .|.+.+.+
T Consensus        52 g~~~vtGevGsGKTv~~Ral~~s~~~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~  128 (269)
T COG3267          52 GILAVTGEVGSGKTVLRRALLASLNE---DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK  128 (269)
T ss_pred             ceEEEEecCCCchhHHHHHHHHhcCC---CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence            68899999999999999988877766   554555666655554433322222                   34444455


Q ss_pred             CCC-CeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccC
Q 036633          300 RPY-SVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSL  377 (550)
Q Consensus       300 ~p~-~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~  377 (550)
                      ..+ -++++||.+-...++...|..+. +.    ..++ +.   ++   |++   .|...+..            .++..
T Consensus       129 g~r~v~l~vdEah~L~~~~le~Lrll~-nl----~~~~~~~---l~---ivL---~Gqp~L~~------------~lr~~  182 (269)
T COG3267         129 GKRPVVLMVDEAHDLNDSALEALRLLT-NL----EEDSSKL---LS---IVL---IGQPKLRP------------RLRLP  182 (269)
T ss_pred             CCCCeEEeehhHhhhChhHHHHHHHHH-hh----cccccCc---ee---eee---cCCcccch------------hhchH
Confidence            555 58899999999999988776544 33    2222 22   22   444   33322211            00000


Q ss_pred             CChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633          378 FKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN  439 (550)
Q Consensus       378 f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~  439 (550)
                      --.+|-.||+.-|...   |++.++...-+...|..-       +...--++++++.++...
T Consensus       183 ~l~e~~~R~~ir~~l~---P~~~~~t~~yl~~~Le~a-------~~~~~l~~~~a~~~i~~~  234 (269)
T COG3267         183 VLRELEQRIDIRIELP---PLTEAETGLYLRHRLEGA-------GLPEPLFSDDALLLIHEA  234 (269)
T ss_pred             HHHhhhheEEEEEecC---CcChHHHHHHHHHHHhcc-------CCCcccCChhHHHHHHHH
Confidence            0135778995337888   999998888888877542       110234788999888764

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.77  E-value=0.00078  Score=72.52  Aligned_cols=76  Identities=13%  Similarity=0.156  Sum_probs=50.5

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH------Hh--------------HHHH
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF------FD--------------SLAA  295 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l------iG--------------~lt~  295 (550)
                      .+|.+++|+||+|+|||++|..||..+..   ......-+++..|... ....+      +|              .+.+
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~---~g~kV~lV~~D~~R~a-a~eQL~~la~~~gvp~~~~~~~~d~~~i~~~  168 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK---KGLKVGLVAADTYRPA-AYDQLKQLAEKIGVPFYGDPDNKDAVEIAKE  168 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEecCCCCCHH-HHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence            45689999999999999999999988865   3446666777766532 11111      11              1233


Q ss_pred             HHHh-CCCCeEEeccccccCH
Q 036633          296 LVKK-RPYSVVLFDKIEKANS  315 (550)
Q Consensus       296 al~~-~p~~VlllDEIeka~~  315 (550)
                      ++.. ..+.+|++|.....+.
T Consensus       169 al~~~~~~DvVIIDTAGr~~~  189 (437)
T PRK00771        169 GLEKFKKADVIIVDTAGRHAL  189 (437)
T ss_pred             HHHHhhcCCEEEEECCCcccc
Confidence            3332 3358999999977664

>PHA02624 large T antigen; Provisional

Probab=97.76  E-value=0.00018  Score=78.95  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=69.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCH---
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANS---  315 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~---  315 (550)
                      ..++|+||+|||||+++.+|.+.+.|      ..+.+|++.-.    ..-.+|-++++      .+++||++-...-   
T Consensus       432 ~~il~~GPpnTGKTtf~~sLl~~L~G------~vlsVNsPt~k----s~FwL~pl~D~------~~~l~dD~t~~~~~~~  495 (647)
T PHA02624        432 RYWLFKGPVNSGKTTLAAALLDLCGG------KSLNVNCPPDK----LNFELGCAIDQ------FMVVFEDVKGQPADNK  495 (647)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC------eEEEeeCCcch----hHHHhhhhhhc------eEEEeeeccccccccc
Confidence            69999999999999999999999988      55556644321    11223433333      5899999853322   


Q ss_pred             ----H----HHHHHHHhhhhccccccccC---CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh
Q 036633          316 ----S----ILNLLLKILKTDFNRKATRG---IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK  384 (550)
Q Consensus       316 ----~----v~~~Ll~~ld~g~~~~l~d~---g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~  384 (550)
                          .    -++-|...||.. +. +.-.   ...+...=--.|.|||-                      ..++.-+.-
T Consensus       496 ~Lp~G~~~dNl~~lRn~LDG~-V~-v~ld~KH~n~~q~~~PPlliT~Ne----------------------y~iP~T~~~  551 (647)
T PHA02624        496 DLPSGQGMNNLDNLRDYLDGS-VP-VNLEKKHLNKRSQIFPPGIVTMNE----------------------YLIPQTVKA  551 (647)
T ss_pred             cCCcccccchhhHHHhhcCCC-Cc-cccchhccCchhccCCCeEEeecC----------------------cccchhHHH
Confidence                1    124455555433 01 1111   01111111235678883                      456777888


Q ss_pred             hccceeEec
Q 036633          385 LLDKLVVID  393 (550)
Q Consensus       385 Rid~ii~f~  393 (550)
                      |+-.++.|.
T Consensus       552 Rf~~~~~F~  560 (647)
T PHA02624        552 RFAKVLDFK  560 (647)
T ss_pred             HHHHhcccc
Confidence            988888888

>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=97.76  E-value=0.00027  Score=71.38  Aligned_cols=167  Identities=19%  Similarity=0.196  Sum_probs=94.6

Q ss_pred             ccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh
Q 036633          208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI  286 (550)
Q Consensus       208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~  286 (550)
                      ++=-++|+..|++..+.-          ..| |+.||+|.+|+||+++++..|-...-      .++.+.++.-   ...
T Consensus        10 lVlf~~ai~hi~ri~RvL----------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~------~~~~i~~~~~---y~~   70 (268)
T PF12780_consen   10 LVLFDEAIEHIARISRVL----------SQPRGHALLVGVGGSGRQSLARLAAFICGY------EVFQIEITKG---YSI   70 (268)
T ss_dssp             ----HHHHHHHHHHHHHH----------CSTTEEEEEECTTTSCHHHHHHHHHHHTTE------EEE-TTTSTT---THH
T ss_pred             eeeHHHHHHHHHHHHHHH----------cCCCCCeEEecCCCccHHHHHHHHHHHhcc------ceEEEEeeCC---cCH
Confidence            445577888877776654          256 99999999999999999976655433      6666665431   123


Q ss_pred             hhHHhHHHHHHH----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633          287 KHFFDSLAALVK----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM  362 (550)
Q Consensus       287 s~liG~lt~al~----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~  362 (550)
                      ..+...|..++.    +....|++|++-+=.++..+..+..+|..|  . +.+-            ++.. ..+.+....
T Consensus        71 ~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sG--e-ip~L------------F~~e-E~~~i~~~l  134 (268)
T PF12780_consen   71 KDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSG--E-IPNL------------FTKE-ELDNIISSL  134 (268)
T ss_dssp             HHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCS--S--TTT------------S-TC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCC--C-CCCC------------ccHH-HHHHHHHHh
Confidence            333222322222    333468888887777778888888888888  5 4431            1110 001111000


Q ss_pred             hh------------hhHhhHHHHhcc-------------CC------ChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          363 LT------------ATYGRVNEVTGS-------------LF------KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       363 ~~------------~~~~~~~~~l~~-------------~f------~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                      .+            ..++-..+.+++             .|      -|+|++++ .+..|.   +.+.+.+..++..+|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~---~W~~eaL~~Va~~~l  210 (268)
T PF12780_consen  135 REEAKAEGISDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFD---PWPEEALLSVANKFL  210 (268)
T ss_dssp             HHHHHHCT--SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEE---S--HHHHHHHHHHHC
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCC---cCCHHHHHHHHHHHH
Confidence            00            001111111111             22      37789988 699999   999999999999888


Q ss_pred             HH
Q 036633          412 EE  413 (550)
Q Consensus       412 ~~  413 (550)
                      ..
T Consensus       211 ~~  212 (268)
T PF12780_consen  211 SD  212 (268)
T ss_dssp             CH
T ss_pred             Hh
Confidence            54

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.74  E-value=9.1e-05  Score=67.84  Aligned_cols=90  Identities=16%  Similarity=0.162  Sum_probs=54.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCC--------------CceeEEecCCCCch-----hhhhhHHh--------
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDND--------------NHLIHFDMGNYTEL-----ESIKHFFD--------  291 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~--------------~~li~id~s~~~~~-----~~~s~liG--------  291 (550)
                      ..+.++||||||||+++.-|++.|...|-.-              --|--+|...-...     .....-+|        
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~   85 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG   85 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence            6789999999999999999999986632000              01111222210000     00001122        


Q ss_pred             ---HHHHHHHh--CCCCeEEecccccc---CHHHHHHHHHhhhhc
Q 036633          292 ---SLAALVKK--RPYSVVLFDKIEKA---NSSILNLLLKILKTD  328 (550)
Q Consensus       292 ---~lt~al~~--~p~~VlllDEIeka---~~~v~~~Ll~~ld~g  328 (550)
                         ....++++  ..-.|+++|||.++   ++.+...+-++|+.+
T Consensus        86 le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~  130 (179)
T COG1618          86 LEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSG  130 (179)
T ss_pred             HHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCC
Confidence               23344443  12379999999876   678888888888877

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.72  E-value=9.1e-05  Score=74.72  Aligned_cols=84  Identities=21%  Similarity=0.424  Sum_probs=56.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh----hhhh-----HHhHHHHHHHhCCCCeEEec
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE----SIKH-----FFDSLAALVKKRPYSVVLFD  308 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~----~~s~-----liG~lt~al~~~p~~VlllD  308 (550)
                      +.++|+||+|+|||++.+++...+..   ....++.+ |-.|+.-.+    .+..     +-..+..++|..| .+|+++
T Consensus        81 GlilisG~tGSGKTT~l~all~~i~~---~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~P-D~i~vg  156 (264)
T cd01129          81 GIILVTGPTGSGKTTTLYSALSELNT---PEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDP-DIIMVG  156 (264)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhhhCC---CCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCC-CEEEec
Confidence            78999999999999999999887754   33344444 222222111    0010     1115566777777 899999


Q ss_pred             cccccCHHHHHHHHHhhhhc
Q 036633          309 KIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       309 EIeka~~~v~~~Ll~~ld~g  328 (550)
                      ||.  +++....+++....|
T Consensus       157 EiR--~~e~a~~~~~aa~tG  174 (264)
T cd01129         157 EIR--DAETAEIAVQAALTG  174 (264)
T ss_pred             cCC--CHHHHHHHHHHHHcC
Confidence            997  456677788888888

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK10536 hypothetical protein; Provisional

Probab=97.69  E-value=0.00044  Score=68.83  Aligned_cols=60  Identities=22%  Similarity=0.307  Sum_probs=41.4

Q ss_pred             HHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHH
Q 036633          180 KLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       180 ~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      +..++|..++..         ++.-...+.+...+......++...             ..+++.||+|||||++|.+++
T Consensus        38 ~~~~~p~~~~~~---------~~~~~~~i~p~n~~Q~~~l~al~~~-------------~lV~i~G~aGTGKT~La~a~a   95 (262)
T PRK10536         38 QMGGVEAIGMAR---------DSRDTSPILARNEAQAHYLKAIESK-------------QLIFATGEAGCGKTWISAAKA   95 (262)
T ss_pred             hhccCCccccch---------hhcCCccccCCCHHHHHHHHHHhcC-------------CeEEEECCCCCCHHHHHHHHH
Confidence            567778665432         2233345666666666666666543             388899999999999999999


Q ss_pred             HH
Q 036633          260 NE  261 (550)
Q Consensus       260 ~~  261 (550)
                      ..
T Consensus        96 ~~   97 (262)
T PRK10536         96 AE   97 (262)
T ss_pred             HH
Confidence            85

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=97.68  E-value=9.9e-05  Score=77.64  Aligned_cols=102  Identities=18%  Similarity=0.251  Sum_probs=63.5

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch-h-hhhhHHh------HHHHHHHhCCCCeEEec
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL-E-SIKHFFD------SLAALVKKRPYSVVLFD  308 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~-~-~~s~liG------~lt~al~~~p~~VlllD  308 (550)
                      .|..+.++||.|+|||.|.-+....+..   ..  -.|+..-+|+.. | ....+.|      .+...+.. ...||+||
T Consensus        61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~---~~--k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfD  134 (362)
T PF03969_consen   61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI---KR--KRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFD  134 (362)
T ss_pred             CCceEEEECCCCCchhHHHHHHHHhCCc---cc--cccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEe
Confidence            4489999999999999999999998865   22  233443344321 1 1112222      22333333 33599999


Q ss_pred             cccccCHH---HHHHHHHh-hhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          309 KIEKANSS---ILNLLLKI-LKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       309 EIeka~~~---v~~~Ll~~-ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      |++=-++.   ++..|+.. ++.|                +++|+|||...+.+..
T Consensus       135 EF~V~DiaDAmil~rLf~~l~~~g----------------vvlVaTSN~~P~~Ly~  174 (362)
T PF03969_consen  135 EFQVTDIADAMILKRLFEALFKRG----------------VVLVATSNRPPEDLYK  174 (362)
T ss_pred             eeeccchhHHHHHHHHHHHHHHCC----------------CEEEecCCCChHHHcC
Confidence            99766554   44433333 3333                5699999999888765

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PRK10867 signal recognition particle protein; Provisional

Probab=97.68  E-value=0.00063  Score=73.12  Aligned_cols=85  Identities=16%  Similarity=0.268  Sum_probs=53.6

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecCCCCchhh-----hhhHHh-------------HH----
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMGNYTELES-----IKHFFD-------------SL----  293 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s~~~~~~~-----~s~liG-------------~l----  293 (550)
                      .|.+++|+||+|+|||+++.-||..+..   . .....-+++..|.....     ...-.|             .+    
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~---~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a  175 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK---KKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAA  175 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHH---hcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence            4589999999999999999999988755   3 34566677766653221     001111             11    


Q ss_pred             HHHHHhCCCCeEEeccccccC--HHHHHHHHHh
Q 036633          294 AALVKKRPYSVVLFDKIEKAN--SSILNLLLKI  324 (550)
Q Consensus       294 t~al~~~p~~VlllDEIeka~--~~v~~~Ll~~  324 (550)
                      .+..+...+.+|++|=....+  ......|..+
T Consensus       176 ~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i  208 (433)
T PRK10867        176 LEEAKENGYDVVIVDTAGRLHIDEELMDELKAI  208 (433)
T ss_pred             HHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHH
Confidence            122344567899999988775  3444444433

>PRK14974 cell division protein FtsY; Provisional

Probab=97.65  E-value=0.0016  Score=67.88  Aligned_cols=86  Identities=20%  Similarity=0.230  Sum_probs=53.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----hhhHHh--------------HHHHHH
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----IKHFFD--------------SLAALV  297 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----~s~liG--------------~lt~al  297 (550)
                      +|..++|+||||+|||+++..+|..+..   ....+.-+++..|.....     ....+|              .+..++
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~---~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai  215 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK---NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI  215 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence            5689999999999999999999988755   333444455554532211     111112              112222


Q ss_pred             ---HhCCCCeEEeccccccC--HHHHHHHHHhh
Q 036633          298 ---KKRPYSVVLFDKIEKAN--SSILNLLLKIL  325 (550)
Q Consensus       298 ---~~~p~~VlllDEIeka~--~~v~~~Ll~~l  325 (550)
                         +...+.+|++|.....+  ...++.|-.+.
T Consensus       216 ~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~  248 (336)
T PRK14974        216 EHAKARGIDVVLIDTAGRMHTDANLMDELKKIV  248 (336)
T ss_pred             HHHHhCCCCEEEEECCCccCCcHHHHHHHHHHH
Confidence               33556899999999986  45555555444

>PRK04296 thymidine kinase; Provisional

Probab=97.64  E-value=0.00035  Score=66.94  Aligned_cols=86  Identities=17%  Similarity=0.199  Sum_probs=48.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec--C-CCCchhhhhhH-----------HhHHHHHH--HhCCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM--G-NYTELESIKHF-----------FDSLAALV--KKRPYS  303 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~--s-~~~~~~~~s~l-----------iG~lt~al--~~~p~~  303 (550)
                      ..+++||+|+|||++|..++..+-.   .....+.+.-  . .+......+++           ...+...+  ....+.
T Consensus         4 i~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (190)
T PRK04296          4 LEFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKID   80 (190)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCC
Confidence            6789999999999999888777644   2333333321  1 11111001111           00122222  234568


Q ss_pred             eEEeccccccCHHHHHHHHHhh-hhc
Q 036633          304 VVLFDKIEKANSSILNLLLKIL-KTD  328 (550)
Q Consensus       304 VlllDEIeka~~~v~~~Ll~~l-d~g  328 (550)
                      +|++||++-++.+....|++.+ +.|
T Consensus        81 vviIDEaq~l~~~~v~~l~~~l~~~g  106 (190)
T PRK04296         81 CVLIDEAQFLDKEQVVQLAEVLDDLG  106 (190)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHHcC
Confidence            9999999998877444455554 344

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.63  E-value=0.0045  Score=65.29  Aligned_cols=111  Identities=14%  Similarity=0.230  Sum_probs=60.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh-----hhhhHHh----------HHHHHHHh-C
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE-----SIKHFFD----------SLAALVKK-R  300 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~-----~~s~liG----------~lt~al~~-~  300 (550)
                      ++.+++|+||||||||+++..||..+... .....+..+.+..|.-..     ...+..|          .+..++.+ .
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~-~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~  214 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMR-FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR  214 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence            34799999999999999999999865320 011244455555553111     1112223          33333432 4


Q ss_pred             CCCeEEeccccccCHH-HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633          301 PYSVVLFDKIEKANSS-ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY  359 (550)
Q Consensus       301 p~~VlllDEIeka~~~-v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~  359 (550)
                      .+.+||||.....+.+ .+.-.+..+...  .         .--.+++|+.++.+.+.+.
T Consensus       215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~--~---------~~~~~lLVLsAts~~~~l~  263 (374)
T PRK14722        215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGA--D---------TPVQRLLLLNATSHGDTLN  263 (374)
T ss_pred             CCCEEEEcCCCCCcccHHHHHHHHHHhcc--C---------CCCeEEEEecCccChHHHH
Confidence            4589999999877532 222333333221  0         0013456777666665543

>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain

Probab=97.63  E-value=0.00077  Score=69.44  Aligned_cols=150  Identities=16%  Similarity=0.226  Sum_probs=80.6

Q ss_pred             hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCc-eeEEecCCC
Q 036633          203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNH-LIHFDMGNY  280 (550)
Q Consensus       203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~-li~id~s~~  280 (550)
                      .|.+-+-|..+.+..+.+.+..+      +...... ..++|+|+.|+|||++.+.|...++.   .... ...+.+..+
T Consensus        46 ~L~~~~~~d~~~~~~l~~~lg~~------L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~---~~~~~~~~~~~~~~  116 (304)
T TIGR01613        46 FLLETFGGDNELIEYLQRVIGYS------LTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGD---YATTAVASLKMNEF  116 (304)
T ss_pred             HHHHHhCCCHHHHHHHHHHHhHH------hcCCCCceEEEEEECCCCCcHHHHHHHHHHHhCh---hhccCCcchhhhhc
Confidence            34333334444555555555444      2222233 78999999999999999999877654   1111 111222222


Q ss_pred             Cc-hhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC---CeEeecC-CeEEEEeCCCCh
Q 036633          281 TE-LESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG---IAAFDLT-NTLIIMTSDLKD  355 (550)
Q Consensus       281 ~~-~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~---g~~vd~~-~~iiI~TsN~g~  355 (550)
                      .. ....+.|.          ...+++.||+..-...-.+.|-.+....  . ++-.   ...+.|+ ++.+|++||--.
T Consensus       117 ~~~~f~~a~l~----------gk~l~~~~E~~~~~~~~~~~lK~lt~gd--~-i~~~~k~k~~~~~~~~~~~i~~tN~~P  183 (304)
T TIGR01613       117 QEHRFGLARLE----------GKRAVIGDEVQKGYRDDESTFKSLTGGD--T-ITARFKNKDPFEFTPKFTLVQSTNHLP  183 (304)
T ss_pred             cCCCchhhhhc----------CCEEEEecCCCCCccccHHhhhhhhcCC--e-EEeecccCCcEEEEEeeEEEEEcCCCC
Confidence            11 11122221          2258999999764333335555555433  2 3322   2334443 456888888532


Q ss_pred             HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633          356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~  393 (550)
                      ..                  ...+.++..|+ .+|+|.
T Consensus       184 ~~------------------~~~~~a~~RR~-~vi~f~  202 (304)
T TIGR01613       184 RI------------------RGFDGGIKRRL-RIIPFT  202 (304)
T ss_pred             cc------------------CCCChhheeeE-EEEecc
Confidence            10                  11246788999 899987

This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.62  E-value=0.00015  Score=76.09  Aligned_cols=85  Identities=25%  Similarity=0.467  Sum_probs=55.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCchhh--------hh----hHHhHHHHHHHhCCCCeE
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTELES--------IK----HFFDSLAALVKKRPYSVV  305 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~~~--------~s----~liG~lt~al~~~p~~Vl  305 (550)
                      +.++++||||+|||++.+++...+...  ....++.+. -.++...+.        +.    .+-..+..+++..| .+|
T Consensus       123 g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~p-d~i  199 (343)
T TIGR01420       123 GLILVTGPTGSGKSTTLASMIDYINKN--AAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDP-DVI  199 (343)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCC-CEE
Confidence            799999999999999999999877531  122333331 112111100        00    11114566777788 799


Q ss_pred             EeccccccCHHHHHHHHHhhhhc
Q 036633          306 LFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       306 llDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      ++||+-  +++.....++....|
T Consensus       200 ~vgEir--d~~~~~~~l~aa~tG  220 (343)
T TIGR01420       200 LIGEMR--DLETVELALTAAETG  220 (343)
T ss_pred             EEeCCC--CHHHHHHHHHHHHcC
Confidence            999996  777777778888888

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.62  E-value=6.9e-05  Score=67.60  Aligned_cols=69  Identities=17%  Similarity=0.369  Sum_probs=45.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL  318 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~  318 (550)
                      .++|++|.||||||++|..||+.+        .|-.|+||.+......   .+..     ...|...+|||     ..++
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~--------~~~~i~isd~vkEn~l---~~gy-----DE~y~c~i~DE-----dkv~   66 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEKT--------GLEYIEISDLVKENNL---YEGY-----DEEYKCHILDE-----DKVL   66 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHHh--------CCceEehhhHHhhhcc---hhcc-----cccccCccccH-----HHHH
Confidence            599999999999999999999776        4777888877533221   1111     12345667777     3445


Q ss_pred             HHHHHhhhhc
Q 036633          319 NLLLKILKTD  328 (550)
Q Consensus       319 ~~Ll~~ld~g  328 (550)
                      +.|-..+..|
T Consensus        67 D~Le~~m~~G   76 (176)
T KOG3347|consen   67 DELEPLMIEG   76 (176)
T ss_pred             HHHHHHHhcC
Confidence            5555444444

>PHA01747 putative ATP-dependent protease

Probab=97.61  E-value=0.00012  Score=75.49  Aligned_cols=145  Identities=14%  Similarity=0.112  Sum_probs=86.5

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhH-HHHHHHh-CCCCeEEeccccccC-
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS-LAALVKK-RPYSVVLFDKIEKAN-  314 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~-lt~al~~-~p~~VlllDEIeka~-  314 (550)
                      +-+++=.||.|||||++-+.+......        ..     ..+..+++.|+.. -+..+-- .-+.+|.||||.... 
T Consensus       190 NyNliELgPRGTGKS~~f~eis~fsp~--------~i-----SGG~~TvA~LFyN~~t~~~GLVg~~D~VaFDEVa~i~f  256 (425)
T PHA01747        190 PVHIIELSNRGTGKTTTFVILQELFNF--------RY-----YTEPPTYANLVYDAKTNALGLVFLSNGLIFDEIQTWKD  256 (425)
T ss_pred             CeeEEEecCCCCChhhHHHHhhhcCCc--------ee-----eCCCCchHHheEecCCCceeEEeeccEEEEEccccccC
Confidence            378999999999999999999764321        11     1122344455431 0100000 124799999998764 


Q ss_pred             ---HHHHHHHHHhhhhccccccccC-CeEee----cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc--CC---Chh
Q 036633          315 ---SSILNLLLKILKTDFNRKATRG-IAAFD----LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS--LF---KPS  381 (550)
Q Consensus       315 ---~~v~~~Ll~~ld~g~~~~l~d~-g~~vd----~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~--~f---~p~  381 (550)
                         .++.++|...|++|  . ++.+ +...+    -.++=+|+..|..+..+.. ...+  +.+...|-+  .|   .++
T Consensus       257 ~~~kdiv~IMKdYMesG--~-FsRG~~~~ss~~sI~a~asiVf~GNin~~~l~~-~~~~--~~l~~~Lp~~~~~r~~~sA  330 (425)
T PHA01747        257 SNMRAINSTLSTGMENC--V-WTRGAGTESDAATIVRCIPIIFAGNPDSSTLDT-YQTP--NYIKNYLVSYELFQSLTKA  330 (425)
T ss_pred             CCHHHHHHHHHHHhhcc--e-eecCCCCcccchhhccceeEEEecCCCCccccc-cccc--hhHHHhcchhhhhcccchH
Confidence               57999999999999  7 7776 32111    2356688888887533221 1010  112333323  45   689


Q ss_pred             hhhhccceeEecCCCCCCHHHH
Q 036633          382 LLKLLDKLVVIDLAVPLLDTTR  403 (550)
Q Consensus       382 ll~Rid~ii~f~~~~pL~~e~i  403 (550)
                      |+.|| .++.+. .|..+.+++
T Consensus       331 ~LDRI-hi~g~~-~pkIs~d~~  350 (425)
T PHA01747        331 ILDRI-AIIIVN-EKKITYDDI  350 (425)
T ss_pred             Hhhhh-hhcccc-cCcCCHHHh
Confidence            99999 566665 224455544

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=97.60  E-value=0.00023  Score=68.81  Aligned_cols=85  Identities=21%  Similarity=0.169  Sum_probs=54.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCC-----ceeEEecCCCCchhh---hhhHHh-------------HHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDN-----HLIHFDMGNYTELES---IKHFFD-------------SLAALV  297 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~-----~li~id~s~~~~~~~---~s~liG-------------~lt~al  297 (550)
                      .+.|+.||||||||++.+-||+.+..   ..+     ...-+|-+.-.....   -..-+|             -+..++
T Consensus       138 lntLiigpP~~GKTTlLRdiaR~~s~---g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI  214 (308)
T COG3854         138 LNTLIIGPPQVGKTTLLRDIARLLSD---GINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI  214 (308)
T ss_pred             eeeEEecCCCCChHHHHHHHHHHhhc---cccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence            57899999999999999999999866   322     333444221100000   000011             456677


Q ss_pred             HhCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          298 KKRPYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       298 ~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      +.....|+++|||.....  ...++.++..|
T Consensus       215 rsm~PEViIvDEIGt~~d--~~A~~ta~~~G  243 (308)
T COG3854         215 RSMSPEVIIVDEIGTEED--ALAILTALHAG  243 (308)
T ss_pred             HhcCCcEEEEeccccHHH--HHHHHHHHhcC
Confidence            775558999999985443  34667788888

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.59  E-value=0.017  Score=61.62  Aligned_cols=111  Identities=14%  Similarity=0.196  Sum_probs=66.5

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHh-ccCCCCCCceeEEecCCCCchhh-----hhhHHh----------HHHHHHHhCC
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANEL-YDNNDNDNHLIHFDMGNYTELES-----IKHFFD----------SLAALVKKRP  301 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l-~~~~~~~~~li~id~s~~~~~~~-----~s~liG----------~lt~al~~~p  301 (550)
                      |.+++|+||+|||||+++..||..+ ..   ......-+++..|.....     .....|          .+.+.+....
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~---~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~  299 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH---MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDG  299 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHh---cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCC
Confidence            4689999999999999999999754 22   222455555555443211     001112          3444555567


Q ss_pred             CCeEEeccccccC--HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          302 YSVVLFDKIEKAN--SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       302 ~~VlllDEIeka~--~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      +.+|++|=....+  ....+.|..+++..  . -      .+...+++|+.++.+...+..
T Consensus       300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~--~-~------~~~~e~~LVLsAt~~~~~~~~  351 (432)
T PRK12724        300 SELILIDTAGYSHRNLEQLERMQSFYSCF--G-E------KDSVENLLVLSSTSSYHHTLT  351 (432)
T ss_pred             CCEEEEeCCCCCccCHHHHHHHHHHHHhh--c-C------CCCCeEEEEEeCCCCHHHHHH
Confidence            7899999766554  45556666655421  1 0      011346788888887755543

>TIGR00959 ffh signal recognition particle protein

Probab=97.59  E-value=0.0023  Score=68.78  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=48.6

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhc-cCCCCCCceeEEecCCCCchhh-----hhhHHh-------------H----H
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELY-DNNDNDNHLIHFDMGNYTELES-----IKHFFD-------------S----L  293 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~-~~~~~~~~li~id~s~~~~~~~-----~s~liG-------------~----l  293 (550)
                      +|.+++|+||+|+|||++|.-||..+. .   ...+..-++|..|.....     ...-+|             .    .
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~---~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a  174 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLKKK---QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA  174 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHh---CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence            468999999999999999999998864 3   234566677776653211     011111             1    1


Q ss_pred             HHHHHhCCCCeEEeccccccC
Q 036633          294 AALVKKRPYSVVLFDKIEKAN  314 (550)
Q Consensus       294 t~al~~~p~~VlllDEIeka~  314 (550)
                      .+......+.+|++|=....+
T Consensus       175 l~~~~~~~~DvVIIDTaGr~~  195 (428)
T TIGR00959       175 LEYAKENGFDVVIVDTAGRLQ  195 (428)
T ss_pred             HHHHHhcCCCEEEEeCCCccc
Confidence            122334567899999887765

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria

Probab=97.58  E-value=0.0047  Score=65.81  Aligned_cols=136  Identities=14%  Similarity=0.135  Sum_probs=83.5

Q ss_pred             HHHHHHhCCC--CeEEecccccc---CH-----HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH-h
Q 036633          293 LAALVKKRPY--SVVLFDKIEKA---NS-----SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE-V  361 (550)
Q Consensus       293 lt~al~~~p~--~VlllDEIeka---~~-----~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~-~  361 (550)
                      |...++...|  =+|+|||++.+   +.     ..++.|++++++-  -  .  |   .+.+.-|++|.....  ..+ .
T Consensus       229 L~~~lr~aGy~GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~--~--~--G---~~~gL~~~~~gTPef--~eD~r  297 (416)
T PF10923_consen  229 LARFLRDAGYKGLLILLDELENLYKLRNDQAREKNYEALRQLIDDI--D--Q--G---RAPGLYFVFAGTPEF--FEDGR  297 (416)
T ss_pred             HHHHHHHcCCCceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHH--h--c--C---CCCceEEEEeeCHHH--hhCcc
Confidence            3344444333  38999999843   33     4588889998753  1  0  1   246677888755321  100 0


Q ss_pred             hhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633          362 MLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN  439 (550)
Q Consensus       362 ~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~  439 (550)
                      .+-.+|..+...+...|  .+.|.+...-+|.+.   ||+.+++..++.+...=....   .+. .-.++++.+..++..
T Consensus       298 rGv~sY~AL~~RL~~~~~~~~~~~n~~~pvIrL~---~l~~eel~~l~~klr~i~a~~---~~~-~~~v~d~~l~~~~~~  370 (416)
T PF10923_consen  298 RGVYSYEALAQRLAEEFFADDGFDNLRAPVIRLQ---PLTPEELLELLEKLRDIYAEA---YGY-ESRVDDEELKAFAQH  370 (416)
T ss_pred             ccccccHHHHHHHhccccccccccCccCceecCC---CCCHHHHHHHHHHHHHHHHhh---CCC-CCCCCHHHHHHHHHH
Confidence            00123556666666554  466666666688888   999999997776654433332   344 557899999999987


Q ss_pred             CcccCCC
Q 036633          440 AARKYGQ  446 (550)
Q Consensus       440 ~~~~~Ga  446 (550)
                      ++.+.|+
T Consensus       371 ~~~r~G~  377 (416)
T PF10923_consen  371 VAGRLGG  377 (416)
T ss_pred             HHhccCc
Confidence            7755554

Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.58  E-value=0.00023  Score=76.33  Aligned_cols=87  Identities=23%  Similarity=0.381  Sum_probs=62.2

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh----hhhhHHh-----HHHHHHHhCCCCeE
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE----SIKHFFD-----SLAALVKKRPYSVV  305 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~----~~s~liG-----~lt~al~~~p~~Vl  305 (550)
                      +| |-+|++||+|+|||++..++-..++.   ...+++.+ |--||.-+.    .+..-+|     .|-..+|+-| .||
T Consensus       256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~---~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDP-DvI  331 (500)
T COG2804         256 RPQGLILVTGPTGSGKTTTLYAALSELNT---PERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDP-DVI  331 (500)
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcC---CCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCC-CeE
Confidence            67 99999999999999999999888887   55555554 222222111    1222234     4444566677 899


Q ss_pred             EeccccccCHHHHHHHHHhhhhcccc
Q 036633          306 LFDKIEKANSSILNLLLKILKTDFNR  331 (550)
Q Consensus       306 llDEIeka~~~v~~~Ll~~ld~g~~~  331 (550)
                      ++.||.  +.+...+..+.--.|  +
T Consensus       332 mVGEIR--D~ETAeiavqAalTG--H  353 (500)
T COG2804         332 MVGEIR--DLETAEIAVQAALTG--H  353 (500)
T ss_pred             EEeccC--CHHHHHHHHHHHhcC--C
Confidence            999998  677788888888899  7

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.56  E-value=7.1e-05  Score=65.67  Aligned_cols=25  Identities=40%  Similarity=0.582  Sum_probs=22.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++++.||||+|||++|+.||+.+.-
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~   25 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGF   25 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC
Confidence            4789999999999999999998843

...

>PRK08118 topology modulation protein; Reviewed

Probab=97.55  E-value=0.00047  Score=64.63  Aligned_cols=31  Identities=29%  Similarity=0.491  Sum_probs=27.2

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      .++++||||+|||++|+.|++.+.-      +++.+|
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~------~~~~lD   33 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNI------PVHHLD   33 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC------Cceecc
Confidence            4789999999999999999999876      677666

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.55  E-value=0.00024  Score=68.47  Aligned_cols=85  Identities=21%  Similarity=0.308  Sum_probs=52.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh----HHHHHHH------------hCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD----SLAALVK------------KRPY  302 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG----~lt~al~------------~~p~  302 (550)
                      ...++.||||||||++.+.+.+.+..   ....++-+-.+.-.-. ....-.|    .+...+.            ..++
T Consensus        19 ~~~~l~G~aGtGKT~~l~~~~~~~~~---~g~~v~~~apT~~Aa~-~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~   94 (196)
T PF13604_consen   19 RVSVLQGPAGTGKTTLLKALAEALEA---AGKRVIGLAPTNKAAK-ELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKK   94 (196)
T ss_dssp             SEEEEEESTTSTHHHHHHHHHHHHHH---TT--EEEEESSHHHHH-HHHHHHTS-EEEHHHHTTEECCEECCSSCC-TST
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHHHh---CCCeEEEECCcHHHHH-HHHHhhCcchhhHHHHHhcCCcccccccccCCcc
Confidence            47888999999999999999998876   4445554443221100 0011111    1111111            1335


Q ss_pred             CeEEeccccccCHHHHHHHHHhhhh
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKT  327 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~  327 (550)
                      .||++||+..++...+..|+..+..
T Consensus        95 ~vliVDEasmv~~~~~~~ll~~~~~  119 (196)
T PF13604_consen   95 DVLIVDEASMVDSRQLARLLRLAKK  119 (196)
T ss_dssp             SEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred             cEEEEecccccCHHHHHHHHHHHHh
Confidence            7999999999999999999988876

>PRK07261 topology modulation protein; Provisional

Probab=97.55  E-value=0.00058  Score=64.26  Aligned_cols=31  Identities=26%  Similarity=0.416  Sum_probs=25.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      .++++||||+|||++|+.|++.+..      +.+.+|
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~------~~i~~D   32 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNC------PVLHLD   32 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCC------CeEecC
Confidence            4789999999999999999988755      555555

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.54  E-value=0.00023  Score=68.40  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      -++.++||||+|||++.|+|...
T Consensus        29 evv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            68999999999999999999854

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.54  E-value=0.00014  Score=68.39  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=20.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .++++|+||+|||++.+.+.+.+.
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~   24 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELK   24 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhh
Confidence            479999999999999999998883

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PLN03210 Resistant to P

Probab=97.54  E-value=0.0023  Score=77.62  Aligned_cols=50  Identities=20%  Similarity=0.264  Sum_probs=39.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++|.+..++.+...+...         .+....+.++||+|+|||++|++++..+..
T Consensus       184 ~~~vG~~~~l~~l~~lL~l~---------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~  233 (1153)
T PLN03210        184 EDFVGIEDHIAKMSSLLHLE---------SEEVRMVGIWGSSGIGKTTIARALFSRLSR  233 (1153)
T ss_pred             ccccchHHHHHHHHHHHccc---------cCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence            45899999998887766432         122378899999999999999999887654

syringae 6; Provisional

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.53  E-value=0.0001  Score=69.37  Aligned_cols=64  Identities=19%  Similarity=0.344  Sum_probs=42.6

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +++|.++.++.+...+...        ....|.+++++||+|+|||++.+.+...+..   ...-++.++|....
T Consensus         1 ~fvgR~~e~~~l~~~l~~~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~---~~~~~~~~~~~~~~   64 (185)
T PF13191_consen    1 QFVGREEEIERLRDLLDAA--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAE---RGGYVISINCDDSE   64 (185)
T ss_dssp             --TT-HHHHHHHHHTTGGT--------SS-----EEE-B-TTSSHHHHHHHHHHHHHH---HT--EEEEEEETTT
T ss_pred             CCCCHHHHHHHHHHHHHHH--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCEEEEEEEeccc
Confidence            4789999999999888622        2224479999999999999999999888876   32238888888774

>PRK13695 putative NTPase; Provisional

Probab=97.52  E-value=0.00055  Score=64.42  Aligned_cols=24  Identities=33%  Similarity=0.344  Sum_probs=21.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .++|+|++|+|||++++.++..+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~   25 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLK   25 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999887763

>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.52  E-value=0.00014  Score=88.22  Aligned_cols=79  Identities=19%  Similarity=0.389  Sum_probs=65.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh---------------HHHHHHHhCCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD---------------SLAALVKKRPYS  303 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG---------------~lt~al~~~p~~  303 (550)
                      .++||-||+|+|||.+++-+|+.+..      ++++|+--+-++   ...++|               .|.+|+++  +.
T Consensus       441 ~pillqG~tssGKtsii~~la~~~g~------~~vrinnhehtd---~qeyig~y~~~~~g~l~freg~LV~Alr~--G~  509 (1856)
T KOG1808|consen  441 FPILLQGPTSSGKTSIIKELARATGK------NIVRINNHEHTD---LQEYIGTYVADDNGDLVFREGVLVQALRN--GD  509 (1856)
T ss_pred             CCeEEecCcCcCchhHHHHHHHHhcc------Cceehhccccch---HHHHHHhhhcCCCCCeeeehhHHHHHHHh--CC
Confidence            48999999999999999999999877      889988655543   233344               66677665  45


Q ss_pred             eEEeccccccCHHHHHHHHHhhhhc
Q 036633          304 VVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       304 VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .++|||+.-++.+++.+|.+++++.
T Consensus       510 ~~vlD~lnla~~dvL~aLnrllddn  534 (1856)
T KOG1808|consen  510 WIVLDELNLAPHDVLEALNRLLDDN  534 (1856)
T ss_pred             EEEeccccccchHHHHHHHhhhhhh
Confidence            8999999999999999999999984

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.50  E-value=0.00044  Score=70.47  Aligned_cols=98  Identities=13%  Similarity=0.156  Sum_probs=60.6

Q ss_pred             HHHhhhhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC
Q 036633          157 ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR  236 (550)
Q Consensus       157 ~~~~~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~  236 (550)
                      +++..+.+....++.++|.+++-     |.+.+        .++       .+........+.+.+...       ...+
T Consensus         8 ~~~~~~~~~~~~~~~~~v~~iy~-----pl~~~--------~~~-------~~~~~~~~~~~~~~f~~~-------~~~~   60 (290)
T TIGR00554         8 DEIKRLKGINEDLSLEEVATIYL-----PLSRL--------LNF-------YISSNLRRQAVLEQFLGT-------NGAK   60 (290)
T ss_pred             HHHHHhhCCCCCcCHHHHHHHHH-----HHHHH--------HHH-------HHHHhhhHHHHHHHHHhc-------ccCC
Confidence            45666777778899999999886     54432        121       122222333333333222       2344


Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE  282 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~  282 (550)
                      +|..+.++||+|+|||++|+.|...+.... .......+.|..|..
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~-~~g~V~vi~~D~f~~  105 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALLSRWP-EHRKVELITTDGFLH  105 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcC-CCCceEEEecccccc
Confidence            678999999999999999999998885200 233455666666643

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.49  E-value=0.0039  Score=63.17  Aligned_cols=76  Identities=20%  Similarity=0.261  Sum_probs=48.4

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh--h---hhHHh--------------HHHH--
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES--I---KHFFD--------------SLAA--  295 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~--~---s~liG--------------~lt~--  295 (550)
                      +|.+++|+||+|+|||+++.-||..+..   ......-+++..|.....  .   ....|              ...+  
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~---~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l  147 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKK---QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI  147 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence            3488999999999999999999988755   334566666665533211  0   01111              0111  


Q ss_pred             -HHHhCCCCeEEeccccccCH
Q 036633          296 -LVKKRPYSVVLFDKIEKANS  315 (550)
Q Consensus       296 -al~~~p~~VlllDEIeka~~  315 (550)
                       ......+.+|++|=....+.
T Consensus       148 ~~~~~~~~D~ViIDT~G~~~~  168 (272)
T TIGR00064       148 QKAKARNIDVVLIDTAGRLQN  168 (272)
T ss_pred             HHHHHCCCCEEEEeCCCCCcc
Confidence             22346678999998887764

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.48  E-value=0.0062  Score=63.11  Aligned_cols=42  Identities=14%  Similarity=0.183  Sum_probs=32.8

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +|.+++|+||+|+|||+++..||..+..   ....+.-+++..|.
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~---~g~~V~Li~~D~~r  154 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKA---QGKKVLLAAGDTFR  154 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHh---cCCeEEEEecCccc
Confidence            4589999999999999999999998865   44456666665553

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=97.46  E-value=0.00041  Score=73.34  Aligned_cols=121  Identities=22%  Similarity=0.326  Sum_probs=73.2

Q ss_pred             cHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC-----CCchhh
Q 036633          211 QNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN-----YTELES  285 (550)
Q Consensus       211 Q~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~-----~~~~~~  285 (550)
                      |..+.+.|.+++...           .|..+.+.||.|||||++.++|...+..   ....++..-.+.     +....+
T Consensus         6 Q~~~~~~v~~~~~~~-----------~~~~~fv~G~~GtGKs~l~~~i~~~~~~---~~~~~~~~a~tg~AA~~i~~G~T   71 (364)
T PF05970_consen    6 QRRVFDTVIEAIENE-----------EGLNFFVTGPAGTGKSFLIKAIIDYLRS---RGKKVLVTAPTGIAAFNIPGGRT   71 (364)
T ss_pred             HHHHHHHHHHHHHcc-----------CCcEEEEEcCCCCChhHHHHHHHHHhcc---ccceEEEecchHHHHHhccCCcc
Confidence            777888887777644           5679999999999999999999998755   322332221111     101112


Q ss_pred             hhhHHh---------H--------HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEE
Q 036633          286 IKHFFD---------S--------LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLI  347 (550)
Q Consensus       286 ~s~liG---------~--------lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~ii  347 (550)
                      +..++|         .        +.+.+  +.-.+|++|||--++..++..+-+.|..=  +   .+ .....|....+
T Consensus        72 ~hs~f~i~~~~~~~~~~~~~~~~~~~~~l--~~~~~lIiDEism~~~~~l~~i~~~lr~i--~---~~~~~~~pFGG~~v  144 (364)
T PF05970_consen   72 IHSFFGIPINNNEKSQCKISKNSRLRERL--RKADVLIIDEISMVSADMLDAIDRRLRDI--R---KSKDSDKPFGGKQV  144 (364)
T ss_pred             hHHhcCccccccccccccccccchhhhhh--hhheeeecccccchhHHHHHHHHHhhhhh--h---cccchhhhcCcceE
Confidence            222233         0        01111  22359999999999999988877666432  2   11 01345666667


Q ss_pred             EEeCC
Q 036633          348 IMTSD  352 (550)
Q Consensus       348 I~TsN  352 (550)
                      |+...
T Consensus       145 il~GD  149 (364)
T PF05970_consen  145 ILFGD  149 (364)
T ss_pred             Eeehh
Confidence            77543

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.45  E-value=0.00014  Score=71.10  Aligned_cols=72  Identities=17%  Similarity=0.329  Sum_probs=42.5

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC-------------CCchhhhhhHHhHHHHHHH--hCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN-------------YTELESIKHFFDSLAALVK--KRP  301 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~-------------~~~~~~~s~liG~lt~al~--~~p  301 (550)
                      .|..+||+|+||+|||++|+.++...        .++..|++.             +....+...+...+ ..+.  ..+
T Consensus        11 ~~~~~liyG~~G~GKtt~a~~~~~~~--------~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l-~~~~~~~~~   81 (220)
T TIGR01618        11 IPNMYLIYGKPGTGKTSTIKYLPGKT--------LVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFY-VMQNIQAVK   81 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHhcCCCC--------EEEeccccchhccCCCCCceeecCCCCCHHHHHHHH-HHHHhcccc
Confidence            45679999999999999999987311        223333321             10111122222222 2333  356


Q ss_pred             CCeEEeccccccCHHH
Q 036633          302 YSVVLFDKIEKANSSI  317 (550)
Q Consensus       302 ~~VlllDEIeka~~~v  317 (550)
                      |.+|+||+|+.+-..+
T Consensus        82 ydtVVIDsI~~l~~~~   97 (220)
T TIGR01618        82 YDNIVIDNISALQNLW   97 (220)
T ss_pred             CCEEEEecHHHHHHHH
Confidence            8999999999864433

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.44  E-value=0.014  Score=63.81  Aligned_cols=77  Identities=18%  Similarity=0.292  Sum_probs=47.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----hhhHHh----------HHHHHHHh-CCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----IKHFFD----------SLAALVKK-RPY  302 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----~s~liG----------~lt~al~~-~p~  302 (550)
                      .++.|+||+|+|||+++..|+..+...+ ....+..+++..|.....     ....+|          .+...+++ ..+
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~~~-~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAAQH-APRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            7999999999999999999887653310 112455555544432111     011112          34444443 357


Q ss_pred             CeEEeccccccCHH
Q 036633          303 SVVLFDKIEKANSS  316 (550)
Q Consensus       303 ~VlllDEIeka~~~  316 (550)
                      .+||+|.....+.+
T Consensus       430 DLVLIDTaG~s~~D  443 (559)
T PRK12727        430 KLVLIDTAGMGQRD  443 (559)
T ss_pred             CEEEecCCCcchhh
Confidence            89999999876544

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.43  E-value=0.0008  Score=63.55  Aligned_cols=84  Identities=19%  Similarity=0.274  Sum_probs=53.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC-------------CCc------hhhhh-----hHH-h--
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN-------------YTE------LESIK-----HFF-D--  291 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~-------------~~~------~~~~s-----~li-G--  291 (550)
                      ..+.+.||+|+|||+++++|+..+..   .... +.+|-..             |..      ..++.     .|- |  
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~  104 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGDLKP---QQGE-ITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGER  104 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCC---CCCE-EEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHH
Confidence            58899999999999999999987654   2222 1222110             000      00111     111 1  


Q ss_pred             ---HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633          292 ---SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT  327 (550)
Q Consensus       292 ---~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~  327 (550)
                         .+..++-..| .++++||.- .+++.....+++.+.+
T Consensus       105 qrv~laral~~~p-~~lllDEP~~~LD~~~~~~l~~~l~~  143 (178)
T cd03247         105 QRLALARILLQDA-PIVLLDEPTVGLDPITERQLLSLIFE  143 (178)
T ss_pred             HHHHHHHHHhcCC-CEEEEECCcccCCHHHHHHHHHHHHH
Confidence               5666777777 799999985 5677878888888754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.42  E-value=0.0076  Score=65.57  Aligned_cols=79  Identities=20%  Similarity=0.286  Sum_probs=47.1

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh-----hhhhHHh----------HHH-HHHHhC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE-----SIKHFFD----------SLA-ALVKKR  300 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~-----~~s~liG----------~lt-~al~~~  300 (550)
                      ++.+++|+||+|+|||+++..||..+.... ....+.-+++..|.-..     ....+.|          .+. ....-.
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~  333 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRH-GASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR  333 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhc-CCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence            347999999999999999999998763200 12244455555542111     1122333          111 122224


Q ss_pred             CCCeEEeccccccCHH
Q 036633          301 PYSVVLFDKIEKANSS  316 (550)
Q Consensus       301 p~~VlllDEIeka~~~  316 (550)
                      .+.++++|.....+.+
T Consensus       334 d~d~VLIDTaGr~~~d  349 (484)
T PRK06995        334 NKHIVLIDTIGMSQRD  349 (484)
T ss_pred             CCCeEEeCCCCcChhh
Confidence            5579999998877654

>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]

Probab=97.40  E-value=0.00043  Score=73.54  Aligned_cols=115  Identities=17%  Similarity=0.235  Sum_probs=78.0

Q ss_pred             HHHHhhhhcCcccCcHHHHHHHHHHHhcchhhh--cCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633          197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAK--KGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI  273 (550)
Q Consensus       197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~--~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li  273 (550)
                      ...|...+.-.|+|++++++.+.-.+.-.-...  -|+.  -+. -++||.|.|||-|+-|.+.|.+...+      .. 
T Consensus       333 yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMK--IRGdINicLmGDPGVAKSQLLkyi~rlapR------gv-  403 (721)
T KOG0482|consen  333 YEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMK--IRGDINICLMGDPGVAKSQLLKYISRLAPR------GV-  403 (721)
T ss_pred             HHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCce--eecceeEEecCCCchhHHHHHHHHHhcCcc------cc-
Confidence            567778888999999999998877665431000  1111  123 68999999999999999999987655      11 


Q ss_pred             EEecCCCCchhhhhhHHhHHHHHHHhCC----------------CCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          274 HFDMGNYTELESIKHFFDSLAALVKKRP----------------YSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       274 ~id~s~~~~~~~~s~liG~lt~al~~~p----------------~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                            |+..-- |.-+ -||.++-+-|                .+|-.|||+||+...=...+-.+++..
T Consensus       404 ------YTTGrG-SSGV-GLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQ  466 (721)
T KOG0482|consen  404 ------YTTGRG-SSGV-GLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQ  466 (721)
T ss_pred             ------eecCCC-CCcc-ccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhh
Confidence                  111000 0001 2344444333                468899999999998888999999988

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=97.40  E-value=0.00037  Score=76.30  Aligned_cols=87  Identities=18%  Similarity=0.350  Sum_probs=58.8

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh----hhhhHHh-----HHHHHHHhCCCCeE
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE----SIKHFFD-----SLAALVKKRPYSVV  305 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~----~~s~liG-----~lt~al~~~p~~Vl  305 (550)
                      +| +.++++||||+|||++..++-..+..   ....++.+ |--||.-.+    .+..-+|     .+..++|..| .||
T Consensus       240 ~~~GlilitGptGSGKTTtL~a~L~~l~~---~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dP-DvI  315 (486)
T TIGR02533       240 RPHGIILVTGPTGSGKTTTLYAALSRLNT---PERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDP-DII  315 (486)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHhccCC---CCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcCC-CEE
Confidence            45 78999999999999999987776654   33445554 212222111    1111112     5667788888 899


Q ss_pred             EeccccccCHHHHHHHHHhhhhcccc
Q 036633          306 LFDKIEKANSSILNLLLKILKTDFNR  331 (550)
Q Consensus       306 llDEIeka~~~v~~~Ll~~ld~g~~~  331 (550)
                      ++.||-  +++.....++....|  +
T Consensus       316 ~vGEiR--d~eta~~a~~aa~tG--H  337 (486)
T TIGR02533       316 MVGEIR--DLETAQIAIQASLTG--H  337 (486)
T ss_pred             EEeCCC--CHHHHHHHHHHHHhC--C
Confidence            999997  566777888888899  7

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.39  E-value=0.00085  Score=68.38  Aligned_cols=44  Identities=18%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +|.+++|+||+|||||+++..||..+.... ....+..+++..|.
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~D~~r  236 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITTDTYR  236 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEECCccc
Confidence            447999999999999999999998774300 12356666666654

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.39  E-value=0.0014  Score=61.59  Aligned_cols=84  Identities=19%  Similarity=0.324  Sum_probs=53.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC----------------ch----hhhhh--HH-h----
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT----------------EL----ESIKH--FF-D----  291 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~----------------~~----~~~s~--li-G----  291 (550)
                      ..+.+.||+|+|||++.++|+..+..   .... +.++-....                +.    .++..  |- |    
T Consensus        29 ~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~-i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r  104 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLLRLYDP---TSGE-ILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR  104 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCC---CCCE-EEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence            68899999999999999999988654   2222 122211000                00    01100  11 2    


Q ss_pred             -HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633          292 -SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT  327 (550)
Q Consensus       292 -~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~  327 (550)
                       .+..++-..| .++++||-- -+++.....|.+++..
T Consensus       105 l~la~al~~~p-~llllDEP~~gLD~~~~~~l~~~l~~  141 (171)
T cd03228         105 IAIARALLRDP-PILILDEATSALDPETEALILEALRA  141 (171)
T ss_pred             HHHHHHHhcCC-CEEEEECCCcCCCHHHHHHHHHHHHH
Confidence             5566676777 799999975 5677777777777753

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.38  E-value=0.016  Score=61.00  Aligned_cols=84  Identities=12%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH------Hh----------HHHHHHHh--
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF------FD----------SLAALVKK--  299 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l------iG----------~lt~al~~--  299 (550)
                      +.+++|+||+|||||+++..||..+..   ...+...+++..|... ++..|      .|          .+..++..  
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~~l~~---~g~~V~lItaDtyR~g-AveQLk~yae~lgvpv~~~~dp~dL~~al~~l~  281 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGWQLLK---QNRTVGFITTDTFRSG-AVEQFQGYADKLDVELIVATSPAELEEAVQYMT  281 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCccCcc-HHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence            479999999999999999999987755   3345666776666432 11111      11          44444432  


Q ss_pred             --CCCCeEEeccccccCH--HHHHHHHHhh
Q 036633          300 --RPYSVVLFDKIEKANS--SILNLLLKIL  325 (550)
Q Consensus       300 --~p~~VlllDEIeka~~--~v~~~Ll~~l  325 (550)
                        ..+.+||+|=....+.  +..+.|-.+.
T Consensus       282 ~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~  311 (407)
T PRK12726        282 YVNCVDHILIDTVGRNYLAEESVSEISAYT  311 (407)
T ss_pred             hcCCCCEEEEECCCCCccCHHHHHHHHHHh
Confidence              3468999999888653  3444444443

>PRK10436 hypothetical protein; Provisional

Probab=97.37  E-value=0.00049  Score=74.64  Aligned_cols=87  Identities=23%  Similarity=0.312  Sum_probs=58.3

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh----hhhhHHh-----HHHHHHHhCCCCeE
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE----SIKHFFD-----SLAALVKKRPYSVV  305 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~----~~s~liG-----~lt~al~~~p~~Vl  305 (550)
                      +| |.+|++||+|+|||++..++-+.+..   ...+++.+ |--||.-.+    .+..-.|     .+..++|..| .||
T Consensus       216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~---~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dP-DvI  291 (462)
T PRK10436        216 QPQGLILVTGPTGSGKTVTLYSALQTLNT---AQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDP-DVI  291 (462)
T ss_pred             hcCCeEEEECCCCCChHHHHHHHHHhhCC---CCCEEEEecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCC-CEE
Confidence            45 89999999999999988877777655   33445443 222332111    0111111     5566777788 899


Q ss_pred             EeccccccCHHHHHHHHHhhhhcccc
Q 036633          306 LFDKIEKANSSILNLLLKILKTDFNR  331 (550)
Q Consensus       306 llDEIeka~~~v~~~Ll~~ld~g~~~  331 (550)
                      ++.||-  +++.....++....|  +
T Consensus       292 ~vGEIR--D~eta~~al~AA~TG--H  313 (462)
T PRK10436        292 MVGEIR--DGETAEIAIKAAQTG--H  313 (462)
T ss_pred             EECCCC--CHHHHHHHHHHHHcC--C
Confidence            999997  566777778888889  7

>PRK06696 uridine kinase; Validated

Probab=97.37  E-value=0.00038  Score=68.39  Aligned_cols=60  Identities=17%  Similarity=0.248  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633          212 NDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE  282 (550)
Q Consensus       212 ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~  282 (550)
                      ...++.|+..+...        .+.+|..+.+.|+||+|||++|+.|++.+..   ...+.+.+.|..|-.
T Consensus         4 ~~~~~~la~~~~~~--------~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~---~g~~v~~~~~Ddf~~   63 (223)
T PRK06696          4 KQLIKELAEHILTL--------NLTRPLRVAIDGITASGKTTFADELAEEIKK---RGRPVIRASIDDFHN   63 (223)
T ss_pred             HHHHHHHHHHHHHh--------CCCCceEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEeccccccC
Confidence            34556666666643        1335689999999999999999999999964   334778888888754

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.35  E-value=0.0012  Score=61.32  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .++++|.||||||++++.|+ .+
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~l   23 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-EL   23 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-Hh
Confidence            47899999999999999999 54

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.35  E-value=0.0017  Score=63.97  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.+.||||||||||-+.||-....
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            57789999999999999999987754

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.34  E-value=0.00063  Score=71.58  Aligned_cols=88  Identities=20%  Similarity=0.420  Sum_probs=56.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE------EecCCCCch------hhh----hhHHhHHHHHHHhCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH------FDMGNYTEL------ESI----KHFFDSLAALVKKRPY  302 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~------id~s~~~~~------~~~----s~liG~lt~al~~~p~  302 (550)
                      +.++++||+|+|||++.+++.+.+.........++.      +....+...      ..+    ..+-..+..++|..| 
T Consensus       135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P-  213 (358)
T TIGR02524       135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP-  213 (358)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC-
Confidence            799999999999999999999887320001112222      222111100      001    011115566888888 


Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhcccc
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTDFNR  331 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~  331 (550)
                      .++++.|+.  +++.....++....|  .
T Consensus       214 d~i~vGEiR--d~et~~~al~aa~tG--h  238 (358)
T TIGR02524       214 HAILVGEAR--DAETISAALEAALTG--H  238 (358)
T ss_pred             CEEeeeeeC--CHHHHHHHHHHHHcC--C
Confidence            699999987  778888889999999  7

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]

Probab=97.34  E-value=0.00054  Score=72.88  Aligned_cols=184  Identities=15%  Similarity=0.112  Sum_probs=101.2

Q ss_pred             HHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCc--CCC-eeEEEeccCCCcHHHHHHHHHHHhcc------CCCCC
Q 036633          199 RVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSR--RQL-GLFLFAGPNCSGKAELAKAIANELYD------NNDND  269 (550)
Q Consensus       199 ~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~--~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~------~~~~~  269 (550)
                      .+...+.-.|+|..+.+++++=.+--.  +|.-+.+.  .+. -++||.|.|||.|+-+.+.+-+...-      +|.+.
T Consensus       324 ~is~sIAPSIfG~~DiKkAiaClLFgG--srK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSA  401 (729)
T KOG0481|consen  324 RISKSIAPSIFGHEDIKKAIACLLFGG--SRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSA  401 (729)
T ss_pred             HHhhccCchhcCchhHHHHHHHHhhcC--ccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCccc
Confidence            334556677999999998876544322  12223222  133 68999999999999999998776522      11000


Q ss_pred             CceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC--CeE-eecCCeE
Q 036633          270 NHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG--IAA-FDLTNTL  346 (550)
Q Consensus       270 ~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--g~~-vd~~~~i  346 (550)
                      .-+   ..|-..++.  ++-|-.--+|.--..++||.+||+||+.++=.-++-+.++..  + +.-.  |-+ +=-++|-
T Consensus       402 AGL---TASV~RD~~--tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQ--T-ISIAKAGITT~LNSRtS  473 (729)
T KOG0481|consen  402 AGL---TASVIRDPS--TREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQ--T-ISIAKAGITTTLNSRTS  473 (729)
T ss_pred             ccc---eeeEEecCC--cceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhh--h-HHHhhhcceeeecchhh
Confidence            000   000000000  000000000111124589999999999998888888888877  4 4333  432 2234455


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHH
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTR  403 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i  403 (550)
                      +++++|.-....-+..   +     ..-.=-|.|-+++|||.|+..+   .-..++.
T Consensus       474 VLAAANpvfGRyDd~K---t-----~~dNIDf~~TILSRFDmIFIVK---D~h~~~~  519 (729)
T KOG0481|consen  474 VLAAANPVFGRYDDTK---T-----GEDNIDFMPTILSRFDMIFIVK---DEHDEER  519 (729)
T ss_pred             hhhhcCCccccccccC---C-----cccccchhhhHhhhccEEEEEe---ccCcchh
Confidence            6666665322211100   0     0001248899999999999888   6555433

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.34  E-value=0.0013  Score=66.59  Aligned_cols=26  Identities=27%  Similarity=0.255  Sum_probs=24.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .+++++||||+|||++.+.++..+..
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~  137 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILST  137 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence            58999999999999999999998865

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.31  E-value=0.001  Score=68.80  Aligned_cols=106  Identities=9%  Similarity=0.079  Sum_probs=62.0

Q ss_pred             HHhhhhcCCCccCHHHHHHHHHHHhCCCCCCCCCch---HHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC
Q 036633          158 RVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKP---EERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS  234 (550)
Q Consensus       158 ~~~~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~---~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~  234 (550)
                      .+.+.+......+.+ ...-+++..|+|+..+....   ...+..+...+.+-=-.+...+..+..++...      ...
T Consensus        57 ~i~~~E~g~~~ps~~-~l~~ia~~l~v~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~~------~~~  129 (309)
T PRK08154         57 YLAQLESGQGNVSIL-LLRRVARALGCSLADLLGDVDTSSPDWLLIRELLEQASPAQLARVRDALSGMLGA------GRR  129 (309)
T ss_pred             HHHHHHCCCCCCCHH-HHHHHHHHhCCCHHHHhCCCCCCChHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh------hhh
Confidence            344444444334433 34455667777766544322   12233344444443334455555555555444      122


Q ss_pred             cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          235 RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      ++.+..+.|+|++|+|||++++.||+.+..      +|+.+|
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~------~~id~D  165 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAARLGV------PFVELN  165 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHcCC------CEEeHH
Confidence            333389999999999999999999999877      777544

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=97.31  E-value=0.00052  Score=76.66  Aligned_cols=87  Identities=17%  Similarity=0.292  Sum_probs=59.8

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh----hhhhHHh-----HHHHHHHhCCCCeE
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE----SIKHFFD-----SLAALVKKRPYSVV  305 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~----~~s~liG-----~lt~al~~~p~~Vl  305 (550)
                      +| |.++|+||||+|||++..++-+.+..   ...+++.+ |--||.-++    .+..-.|     .+..++|..| .||
T Consensus       314 ~~~Glilv~G~tGSGKTTtl~a~l~~~~~---~~~~i~tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dP-DvI  389 (564)
T TIGR02538       314 KPQGMVLVTGPTGSGKTVSLYTALNILNT---EEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDP-DII  389 (564)
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHHhhCC---CCceEEEecCCceecCCCceEEEeccccCCCHHHHHHHHhccCC-CEE
Confidence            45 89999999999999998887777755   34445443 111222111    0111112     5566778888 799


Q ss_pred             EeccccccCHHHHHHHHHhhhhcccc
Q 036633          306 LFDKIEKANSSILNLLLKILKTDFNR  331 (550)
Q Consensus       306 llDEIeka~~~v~~~Ll~~ld~g~~~  331 (550)
                      ++.||-  +++.....++....|  +
T Consensus       390 ~vGEiR--d~eta~~a~~aa~tG--H  411 (564)
T TIGR02538       390 MVGEIR--DLETAEIAIKAAQTG--H  411 (564)
T ss_pred             EeCCCC--CHHHHHHHHHHHHcC--C
Confidence            999998  778888888899899  7

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.30  E-value=0.00097  Score=63.01  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=27.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +++++||||+|||++|+.||+.+        .+..++++++.
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~--------~~~~is~~d~l   34 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF--------GFTHLSAGDLL   34 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc--------CCeEEECChHH
Confidence            37899999999999999999987        45677776543

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.29  E-value=0.0013  Score=61.31  Aligned_cols=84  Identities=14%  Similarity=0.255  Sum_probs=54.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc---hhhhhh-------HH-h-----HHHHHHHhCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE---LESIKH-------FF-D-----SLAALVKKRPY  302 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~---~~~~s~-------li-G-----~lt~al~~~p~  302 (550)
                      -.+.+.||+|+|||++.++|+..+..   .... +.++-.....   ......       |- |     .+..++-..| 
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~-v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p-  101 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILSGLYKP---DSGE-ILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNA-  101 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC---CCeE-EEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC-
Confidence            68899999999999999999987654   2222 3333222111   000111       11 1     5667777777 


Q ss_pred             CeEEecccc-ccCHHHHHHHHHhhhh
Q 036633          303 SVVLFDKIE-KANSSILNLLLKILKT  327 (550)
Q Consensus       303 ~VlllDEIe-ka~~~v~~~Ll~~ld~  327 (550)
                      .++++||.- .+++.....+.+++..
T Consensus       102 ~illlDEP~~~LD~~~~~~l~~~l~~  127 (163)
T cd03216         102 RLLILDEPTAALTPAEVERLFKVIRR  127 (163)
T ss_pred             CEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            799999985 4677777777777753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=97.27  E-value=0.0006  Score=68.86  Aligned_cols=83  Identities=20%  Similarity=0.368  Sum_probs=54.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCchhh----------hhhHHhHHHHHHHhCCCCeEEe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTELES----------IKHFFDSLAALVKKRPYSVVLF  307 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~~~----------~s~liG~lt~al~~~p~~Vlll  307 (550)
                      ++++|+||+|+|||++.+++...+..   ....++.+. ..|+.-.+.          ...+.-.+..++|..| .+|++
T Consensus       128 ~~ili~G~tGSGKTT~l~all~~i~~---~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~p-D~iii  203 (270)
T PF00437_consen  128 GNILISGPTGSGKTTLLNALLEEIPP---EDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDP-DVIII  203 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHCHT---TTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS---SEEEE
T ss_pred             eEEEEECCCccccchHHHHHhhhccc---cccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCC-Ccccc
Confidence            79999999999999999999998876   324555543 222221110          0011115566778888 79999


Q ss_pred             ccccccCHHHHHHHHHhhhhc
Q 036633          308 DKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       308 DEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .||-.  ++.... ++....|
T Consensus       204 gEiR~--~e~~~~-~~a~~tG  221 (270)
T PF00437_consen  204 GEIRD--PEAAEA-IQAANTG  221 (270)
T ss_dssp             SCE-S--CHHHHH-HHHHHTT
T ss_pred             cccCC--HhHHHH-HHhhccC
Confidence            99984  467677 8899998

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=97.24  E-value=0.0035  Score=72.06  Aligned_cols=87  Identities=11%  Similarity=0.077  Sum_probs=54.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCC--CceeEEecC--------CC--CchhhhhhHHhHHH----HHHHh--C
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDND--NHLIHFDMG--------NY--TELESIKHFFDSLA----ALVKK--R  300 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~--~~li~id~s--------~~--~~~~~~s~liG~lt----~al~~--~  300 (550)
                      ..+++.|+||||||++++++.+.+..   ..  .+++-.--+        +.  .+..++.+++|...    .....  .
T Consensus       339 ~~~iitGgpGTGKTt~l~~i~~~~~~---~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~  415 (720)
T TIGR01448       339 KVVILTGGPGTGKTTITRAIIELAEE---LGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPI  415 (720)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccc
Confidence            38899999999999999999887754   22  122221111        10  01123334444110    00111  3


Q ss_pred             CCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          301 PYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       301 p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      +..+|++||+..++...+..|++.+..|
T Consensus       416 ~~~llIvDEaSMvd~~~~~~Ll~~~~~~  443 (720)
T TIGR01448       416 DCDLLIVDESSMMDTWLALSLLAALPDH  443 (720)
T ss_pred             cCCEEEEeccccCCHHHHHHHHHhCCCC
Confidence            4579999999999999999999888665

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.23  E-value=0.0024  Score=58.93  Aligned_cols=84  Identities=27%  Similarity=0.408  Sum_probs=53.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch--hhhhh-------HH-h-----HHHHHHHhCCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL--ESIKH-------FF-D-----SLAALVKKRPYS  303 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~--~~~s~-------li-G-----~lt~al~~~p~~  303 (550)
                      ..+.++||+|+|||++.++|+..+..   ... -+.++-......  .....       |- |     .+..++-..| .
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~~~---~~G-~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~-~  100 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLKP---TSG-EILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNP-D  100 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC---Ccc-EEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCC-C
Confidence            58899999999999999999987654   222 233433221110  00000       11 2     4566666666 7


Q ss_pred             eEEecccc-ccCHHHHHHHHHhhhh
Q 036633          304 VVLFDKIE-KANSSILNLLLKILKT  327 (550)
Q Consensus       304 VlllDEIe-ka~~~v~~~Ll~~ld~  327 (550)
                      ++++||.. .+++.....+.+++..
T Consensus       101 i~ilDEp~~~lD~~~~~~l~~~l~~  125 (157)
T cd00267         101 LLLLDEPTSGLDPASRERLLELLRE  125 (157)
T ss_pred             EEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999986 5677777777777754

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.21  E-value=0.0028  Score=62.61  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++++||||+|||++|..++...
T Consensus        26 ~~~~i~G~~GsGKt~l~~~~~~~~   49 (234)
T PRK06067         26 SLILIEGDHGTGKSVLSQQFVYGA   49 (234)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHH
Confidence            688999999999999999986543

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.21  E-value=0.00034  Score=65.18  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=24.5

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |..++|+||||+|||++|+.||+.+..
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l~~   30 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRLGY   30 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            368999999999999999999999855

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=97.20  E-value=0.0029  Score=66.96  Aligned_cols=39  Identities=21%  Similarity=0.433  Sum_probs=30.5

Q ss_pred             eeEEEeccCCCcHHHHH--HHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          239 GLFLFAGPNCSGKAELA--KAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lA--k~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      .-+++.||.|+||++|.  ++|..        ..+.+.|||..+.+...
T Consensus        18 TFIvV~GPrGSGK~elV~d~~L~~--------r~~vL~IDC~~i~~ar~   58 (431)
T PF10443_consen   18 TFIVVQGPRGSGKRELVMDHVLKD--------RKNVLVIDCDQIVKARG   58 (431)
T ss_pred             eEEEEECCCCCCccHHHHHHHHhC--------CCCEEEEEChHhhhccC
Confidence            67789999999999998  55552        34689999998876443

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=97.19  E-value=0.0013  Score=69.53  Aligned_cols=86  Identities=16%  Similarity=0.259  Sum_probs=56.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCchh--h----hhhHHh--------HHHHHHHhCCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTELE--S----IKHFFD--------SLAALVKKRPYS  303 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~~--~----~s~liG--------~lt~al~~~p~~  303 (550)
                      +.++++||||+|||++.+++.+++.... ....++.+. -.||.-.+  .    ...-+|        .+..++|..| .
T Consensus       150 GlilI~G~TGSGKTT~l~al~~~i~~~~-~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~P-D  227 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIYQHCGETY-PDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAP-K  227 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCC-C
Confidence            6789999999999999999998874200 122444442 11221100  0    000011        4556778888 7


Q ss_pred             eEEeccccccCHHHHHHHHHhhhhc
Q 036633          304 VVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       304 VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      +|++.|+-  +++....+++....|
T Consensus       228 ~I~vGEiR--d~et~~~al~aa~TG  250 (372)
T TIGR02525       228 IIGVGEIR--DLETFQAAVLAGQSG  250 (372)
T ss_pred             EEeeCCCC--CHHHHHHHHHHHhcC
Confidence            99999998  567778888999999

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.18  E-value=0.0023  Score=60.53  Aligned_cols=84  Identities=24%  Similarity=0.358  Sum_probs=53.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc---h---hhhh------hHHh---------------
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE---L---ESIK------HFFD---------------  291 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~---~---~~~s------~liG---------------  291 (550)
                      ..+.+.||+|+|||++.++|+..+..   .... +.+|......   .   ..+.      ..+|               
T Consensus        26 ~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~-v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G  101 (180)
T cd03214          26 EIVGILGPNGAGKSTLLKTLAGLLKP---SSGE-ILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG  101 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC---CCcE-EEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence            68899999999999999999987644   2322 3333222111   0   0000      0011               


Q ss_pred             -----HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633          292 -----SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT  327 (550)
Q Consensus       292 -----~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~  327 (550)
                           .+..++-..| .++++||-- .+++.....+.+++..
T Consensus       102 ~~qrl~laral~~~p-~llllDEP~~~LD~~~~~~~~~~l~~  142 (180)
T cd03214         102 ERQRVLLARALAQEP-PILLLDEPTSHLDIAHQIELLELLRR  142 (180)
T ss_pred             HHHHHHHHHHHhcCC-CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence                 5566666667 799999975 5677777777777754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.18  E-value=0.0038  Score=58.67  Aligned_cols=84  Identities=20%  Similarity=0.279  Sum_probs=52.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC---C-------------ch----hhhhh--HH-h----
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY---T-------------EL----ESIKH--FF-D----  291 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~---~-------------~~----~~~s~--li-G----  291 (550)
                      ..+.++||+|+|||+|.++|+..+..   .... +.+|-...   .             +.    .++..  |- |    
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qr  104 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLILGLLRP---TSGR-VRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQR  104 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCC---CCCe-EEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHH
Confidence            57899999999999999999987643   2211 12211100   0             00    01110  11 2    


Q ss_pred             -HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633          292 -SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT  327 (550)
Q Consensus       292 -~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~  327 (550)
                       .+..++-..| .++++||.- .+++.....+++++..
T Consensus       105 v~la~al~~~p-~~lllDEPt~~LD~~~~~~l~~~l~~  141 (173)
T cd03246         105 LGLARALYGNP-RILVLDEPNSHLDVEGERALNQAIAA  141 (173)
T ss_pred             HHHHHHHhcCC-CEEEEECCccccCHHHHHHHHHHHHH
Confidence             5566666777 799999985 5677777777777754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK05439 pantothenate kinase; Provisional

Probab=97.15  E-value=0.00071  Score=69.52  Aligned_cols=97  Identities=14%  Similarity=0.161  Sum_probs=56.3

Q ss_pred             HHHhhhhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC
Q 036633          157 ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR  236 (550)
Q Consensus       157 ~~~~~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~  236 (550)
                      +++..+.+....++.++|.+++-     |++++.        .+       ++........+...+...       ....
T Consensus        32 ~~~~~l~~~~~~~~~~~v~~iy~-----plarli--------~~-------~~~~~~~~~~~~~~fl~~-------~~~~   84 (311)
T PRK05439         32 EELERLRGLNDPISLEEVAEIYL-----PLSRLL--------NL-------YVAANQRLQAALEQFLGK-------NGQK   84 (311)
T ss_pred             HHHHHhhcCCCCCCHHHHHHHHH-----HHHHHH--------HH-------HHHhhHHHHHHHHHHhcc-------cCCC
Confidence            44556666677788888888775     544321        11       111111112222222211       1334


Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +|..+.+.||||+|||++|+.|+..+.... .......+.|..|-
T Consensus        85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~-~~~~v~vi~~DdFy  128 (311)
T PRK05439         85 VPFIIGIAGSVAVGKSTTARLLQALLSRWP-EHPKVELVTTDGFL  128 (311)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhhC-CCCceEEEeccccc
Confidence            668899999999999999999999875300 12245567777764

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.12  E-value=0.00032  Score=63.23  Aligned_cols=25  Identities=44%  Similarity=0.663  Sum_probs=22.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++++||||+|||++|+.+++.+..
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~   25 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGA   25 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCC
Confidence            4789999999999999999988743

...

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=97.11  E-value=0.0032  Score=60.62  Aligned_cols=44  Identities=23%  Similarity=0.443  Sum_probs=33.3

Q ss_pred             cCCCeeEEEeccCCCcHHHHHHHHHHHh-ccCCCCCCceeEEecCCCCchh
Q 036633          235 RRQLGLFLFAGPNCSGKAELAKAIANEL-YDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l-~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ..+|..+++.||||+|||+++..+...+ .+      .++.||..++...+
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~------~~v~i~~D~~r~~~   56 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGG------GIVVIDADEFRQFH   56 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-------SEEE-GGGGGGGS
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhccCC------CeEEEehHHHHHhc
Confidence            4577899999999999999999999887 44      78999988877654

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]

Probab=97.10  E-value=0.0016  Score=70.28  Aligned_cols=200  Identities=16%  Similarity=0.165  Sum_probs=119.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------CCCCcee
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------DNDNHLI  273 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------~~~~~li  273 (550)
                      ..++|.++.|.+++..+...   .+|+..  +...+++.||.|.||++++..+-+.+-..-            -.+.||.
T Consensus        76 ~~ffG~eesI~~~v~~~~~a---a~~le~--~kqiL~LlGPVggGKSsl~e~lk~~~e~~pi~~~~~~~~~sPv~e~PL~  150 (649)
T COG2766          76 NDFFGMEESIEQIVGYFKHA---AQGLEE--RKQILYLLGPVGGGKSSLAERLKRLMERVPIYDLDANGKGSPVHESPLH  150 (649)
T ss_pred             hhhccHHHHHHHHHHHHhhh---hhccch--hhhhheeeccCCCchHHHHHHHHHHhhhCCceecccccCcCCCcCCCcc
Confidence            67899999999999999988   777421  226899999999999999999988774310            0122332


Q ss_pred             EEe----------------------cCCCCch--------------------------------------hhhhhHHh--
Q 036633          274 HFD----------------------MGNYTEL--------------------------------------ESIKHFFD--  291 (550)
Q Consensus       274 ~id----------------------~s~~~~~--------------------------------------~~~s~liG--  291 (550)
                      -|+                      ||.+...                                      ..++.|.|  
T Consensus       151 Lf~pd~l~~~~e~~ygi~~~~~~~~lsP~~~~rL~~E~~gdi~~~~Vv~~~~S~~r~~gIg~~eP~D~~nQD~s~L~G~V  230 (649)
T COG2766         151 LFPPDHLADDLEHEYGIRRRRLEGDLSPWARKRLDHEYGGDIEKFAVVKLNPSILRRIGIGKTEPGDENNQDISALTGKV  230 (649)
T ss_pred             cCCHHHhhhhhhhhccchhhhccCCCCHHHHHHHHHHhCCccceeEEEEeecchhccceeeecCCCCCCCcchhHhhccc
Confidence            221                      1100000                                      00111111  


Q ss_pred             ----------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCC
Q 036633          292 ----------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLK  354 (550)
Q Consensus       292 ----------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g  354 (550)
                                      .+.+++.+...|++=|-|.-|+|..++.-||.+-++|  . +... |--...-+.+||..||-.
T Consensus       231 di~kL~~yge~DP~Aysy~Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg--~-~k~~~~~~~i~~d~lIvahsNes  307 (649)
T COG2766         231 DISKLEHYGESDPRAYSYSGALCRANRGLMEFVEMFKAPIKVLHPLLTATQEG--N-YKGTEGIGAIPFDGLIVAHSNES  307 (649)
T ss_pred             cHHHHhhcccCCchhhcccchhhcccchHHHHHHHHhCcHHHHHHHhcccccC--c-cCCCCCcCccccCceEEeecCcH
Confidence                            2222333333367778888899999999999999999  6 5555 444444456677777742


Q ss_pred             hHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCC-CHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633          355 DEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPL-LDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL  433 (550)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL-~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~  433 (550)
                      .-....              ...=+.+|++|+ .++.++   -. +-.+=.+|..+.|..       ..+....+.|.++
T Consensus       308 E~q~fk--------------~n~~nEAf~dRi-~~v~vP---Y~L~vseE~kIYEKll~~-------s~ls~~h~APhTL  362 (649)
T COG2766         308 EWQTFK--------------NNKNNEAFLDRI-YKVKVP---YCLRVSEEAKIYEKLLQN-------SELSDAHCAPHTL  362 (649)
T ss_pred             HHHHhh--------------cCCchHHHHhhe-eeeecc---eeeeecHHHHHHHHHhcc-------ccccccccCchHH
Confidence            111100              112257899999 666665   22 334445666555532       3331245677776


Q ss_pred             HHHHh
Q 036633          434 VHIAS  438 (550)
Q Consensus       434 ~~L~~  438 (550)
                      +.++-
T Consensus       363 ~~aa~  367 (649)
T COG2766         363 EVAAL  367 (649)
T ss_pred             HHHHH
Confidence            66654

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.10  E-value=0.0033  Score=69.52  Aligned_cols=48  Identities=19%  Similarity=0.347  Sum_probs=36.5

Q ss_pred             HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCC
Q 036633          292 SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       292 ~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~  353 (550)
                      .+...+-.+| .++||||.- .++++..+.|++.+.+.    +         .++.||..+..
T Consensus       525 afARilL~kP-~~v~LDEATsALDe~~e~~l~q~l~~~----l---------p~~tvISV~Hr  573 (604)
T COG4178         525 AFARLLLHKP-KWVFLDEATSALDEETEDRLYQLLKEE----L---------PDATVISVGHR  573 (604)
T ss_pred             HHHHHHHcCC-CEEEEecchhccChHHHHHHHHHHHhh----C---------CCCEEEEeccc
Confidence            4555666778 799999985 56899999999999875    2         45667776654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.10  E-value=0.0035  Score=58.74  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=31.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +++|.||||+|||+++..++..+..   .......+|+..+.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~---~g~~v~~i~~D~~~   40 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKK---KGKKVLLVAADTYR   40 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEEcCCCC
Confidence            5789999999999999999988765   34466777776554

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.09  E-value=0.0034  Score=58.68  Aligned_cols=84  Identities=20%  Similarity=0.309  Sum_probs=53.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec----CCCC-----chhhhh---------hHHh------HHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM----GNYT-----ELESIK---------HFFD------SLA  294 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~----s~~~-----~~~~~s---------~liG------~lt  294 (550)
                      ..+.+.||+|+|||+++++|+..+..   ....+ .++-    +-+.     ...++.         .|-|      .+.
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i-~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~la  103 (166)
T cd03223          28 DRLLITGPSGTGKSSLFRALAGLWPW---GSGRI-GMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFA  103 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC---CCceE-EECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHH
Confidence            68899999999999999999987643   22211 1110    0000     000111         1111      566


Q ss_pred             HHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633          295 ALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT  327 (550)
Q Consensus       295 ~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~  327 (550)
                      .++-..| .++++||.- .+++.....+.+++.+
T Consensus       104 ral~~~p-~~lllDEPt~~LD~~~~~~l~~~l~~  136 (166)
T cd03223         104 RLLLHKP-KFVFLDEATSALDEESEDRLYQLLKE  136 (166)
T ss_pred             HHHHcCC-CEEEEECCccccCHHHHHHHHHHHHH
Confidence            6777777 799999986 5678888888888864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.08  E-value=0.0027  Score=60.08  Aligned_cols=88  Identities=20%  Similarity=0.214  Sum_probs=48.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCC-CCC------CceeE---------EecCCCCchhhhhhHHh------HHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNN-DND------NHLIH---------FDMGNYTELESIKHFFD------SLAAL  296 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~------~~li~---------id~s~~~~~~~~s~liG------~lt~a  296 (550)
                      ..+.+.||+|+|||+|.+++........ ...      .++..         +++....-......|-|      .+..+
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lara  101 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASE  101 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHH
Confidence            6889999999999999999852100000 000      01111         12211100001111111      56667


Q ss_pred             HHhC--CCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633          297 VKKR--PYSVVLFDKIE-KANSSILNLLLKILKT  327 (550)
Q Consensus       297 l~~~--p~~VlllDEIe-ka~~~v~~~Ll~~ld~  327 (550)
                      +-..  | .++++||.- .+++.....|++.+.+
T Consensus       102 l~~~~~p-~llLlDEPt~~LD~~~~~~l~~~l~~  134 (176)
T cd03238         102 LFSEPPG-TLFILDEPSTGLHQQDINQLLEVIKG  134 (176)
T ss_pred             HhhCCCC-CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            7777  6 799999985 4677777777777653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.07  E-value=0.0016  Score=68.45  Aligned_cols=89  Identities=20%  Similarity=0.303  Sum_probs=52.5

Q ss_pred             CeeEEEeccCCCcHHH-HHHHHHHHhccCCCCCCceeEEecCCCCchh-----hhhhHHh----------HHHHHHHh-C
Q 036633          238 LGLFLFAGPNCSGKAE-LAKAIANELYDNNDNDNHLIHFDMGNYTELE-----SIKHFFD----------SLAALVKK-R  300 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~-lAk~la~~l~~~~~~~~~li~id~s~~~~~~-----~~s~liG----------~lt~al~~-~  300 (550)
                      ++++.|+||||||||+ +|+.-|++....+...-.+|..|  .|.=..     ....+.|          .|.+++.. .
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtD--tYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~  280 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTD--TYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR  280 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEec--cchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence            4899999999999998 56666666523222333455555  443111     1122333          55555543 3


Q ss_pred             CCCeEEeccccccCHHH--HHHHHHhhhhc
Q 036633          301 PYSVVLFDKIEKANSSI--LNLLLKILKTD  328 (550)
Q Consensus       301 p~~VlllDEIeka~~~v--~~~Ll~~ld~g  328 (550)
                      .+.+||+|=+.+-+.+.  ..-|-.+++.+
T Consensus       281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~  310 (407)
T COG1419         281 DCDVILVDTAGRSQYDKEKIEELKELIDVS  310 (407)
T ss_pred             cCCEEEEeCCCCCccCHHHHHHHHHHHhcc
Confidence            34799999999877543  44455555444

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.07  E-value=0.0019  Score=62.09  Aligned_cols=43  Identities=21%  Similarity=0.332  Sum_probs=32.7

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHh
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      -.+|..+|++.|.-.+...             .+.-|.||||||||++.|++-+.-
T Consensus        15 ~yYg~~~aL~~i~l~i~~~-------------~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          15 LYYGDKHALKDINLDIPKN-------------KVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             EEECchhhhccCceeccCC-------------ceEEEECCCCcCHHHHHHHHHhhc
Confidence            4678777776655444433             588899999999999999997653

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=97.06  E-value=0.0031  Score=70.78  Aligned_cols=26  Identities=19%  Similarity=0.184  Sum_probs=23.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus       370 ~~~aIvG~sGsGKSTLl~ll~gl~~p  395 (582)
T PRK11176        370 KTVALVGRSGSGKSTIANLLTRFYDI  395 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCC
Confidence            56799999999999999999998754

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.06  E-value=0.00046  Score=71.83  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.|.|||||||||+-|+||-.-..
T Consensus        32 ef~~lLGPSGcGKTTlLR~IAGfe~p   57 (352)
T COG3842          32 EFVTLLGPSGCGKTTLLRMIAGFEQP   57 (352)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            35679999999999999999987654

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.06  E-value=0.051  Score=58.27  Aligned_cols=112  Identities=15%  Similarity=0.270  Sum_probs=58.7

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHh-ccCCCCCCceeEEecCCCCc---hhhhhhHHh----------HHHHHHHh-CC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANEL-YDNNDNDNHLIHFDMGNYTE---LESIKHFFD----------SLAALVKK-RP  301 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l-~~~~~~~~~li~id~s~~~~---~~~~s~liG----------~lt~al~~-~p  301 (550)
                      ++..+.|+||+|+|||+++..||..+ ...+.....++..|...+..   -....++.|          .+..++.. ..
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~  269 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG  269 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence            34799999999999999999888753 11110122334433322110   011223333          33333332 45


Q ss_pred             CCeEEeccccccCHH--HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          302 YSVVLFDKIEKANSS--ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       302 ~~VlllDEIeka~~~--v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      +.++++|.....+.+  ....|-.+...+  .          .-..++++.++.+...+..
T Consensus       270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~--~----------~~~~~LVl~at~~~~~~~~  318 (420)
T PRK14721        270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCG--T----------QVKHLLLLNATSSGDTLDE  318 (420)
T ss_pred             CCEEEecCCCCCcchHHHHHHHHHHhccC--C----------CceEEEEEcCCCCHHHHHH
Confidence            679999998776642  333333222212  1          1235577777766555433

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=97.05  E-value=0.00078  Score=68.67  Aligned_cols=29  Identities=21%  Similarity=0.277  Sum_probs=26.3

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++|.++++.||||||||++|..||..+..
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~  118 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGI  118 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46788999999999999999999999855

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.04  E-value=0.0016  Score=61.59  Aligned_cols=35  Identities=14%  Similarity=0.115  Sum_probs=25.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      ++++.||||+|||++|..++...-.   ...+.+.+.+
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~   35 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTL   35 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEEC
Confidence            4789999999999999988766544   3345555554

A related protein is found in archaea.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.04  E-value=0.0077  Score=60.76  Aligned_cols=88  Identities=23%  Similarity=0.396  Sum_probs=61.4

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchhhh----hhHHh--------HHHHHHHhCCC
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELESI----KHFFD--------SLAALVKKRPY  302 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~~~----s~liG--------~lt~al~~~p~  302 (550)
                      .| |-+|.+||+|+|||+..-++-.++...  ...+++.+ |--||...+.-    .+=+|        .|..|+|+-| 
T Consensus       123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~--~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDP-  199 (353)
T COG2805         123 SPRGLILVTGPTGSGKSTTLAAMIDYINKH--KAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDP-  199 (353)
T ss_pred             CCCceEEEeCCCCCcHHHHHHHHHHHHhcc--CCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCC-
Confidence            45 889999999999999888887777652  33344544 22233322111    12233        6667788888 


Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhcccc
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTDFNR  331 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~  331 (550)
                      .|||+=|+-  +.+....-|..-+.|  .
T Consensus       200 DVIlvGEmR--D~ETi~~ALtAAETG--H  224 (353)
T COG2805         200 DVILVGEMR--DLETIRLALTAAETG--H  224 (353)
T ss_pred             CEEEEeccc--cHHHHHHHHHHHhcC--C
Confidence            799999986  677888889999999  7

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.04  E-value=0.0061  Score=55.59  Aligned_cols=83  Identities=27%  Similarity=0.330  Sum_probs=53.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC---CCCchhhhhhHHh-HHHHHHHhCCCCeEEecccc-cc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG---NYTELESIKHFFD-SLAALVKKRPYSVVLFDKIE-KA  313 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s---~~~~~~~~s~liG-~lt~al~~~p~~VlllDEIe-ka  313 (550)
                      ..+.+.||+|+|||+++++|+..+..   .... +.+|-.   .|....+....-- .+..++-..| .++++||-. .+
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~-i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p-~illlDEP~~~L  101 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGELEP---DEGI-VTWGSTVKIGYFEQLSGGEKMRLALAKLLLENP-NLLLLDEPTNHL  101 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCC---CceE-EEECCeEEEEEEccCCHHHHHHHHHHHHHhcCC-CEEEEeCCccCC
Confidence            68899999999999999999987644   2222 222210   0111011000000 5677777777 799999985 56


Q ss_pred             CHHHHHHHHHhhh
Q 036633          314 NSSILNLLLKILK  326 (550)
Q Consensus       314 ~~~v~~~Ll~~ld  326 (550)
                      ++.....|.+.+.
T Consensus       102 D~~~~~~l~~~l~  114 (144)
T cd03221         102 DLESIEALEEALK  114 (144)
T ss_pred             CHHHHHHHHHHHH
Confidence            7877788887775

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK06547 hypothetical protein; Provisional

Probab=97.04  E-value=0.00098  Score=62.84  Aligned_cols=28  Identities=32%  Similarity=0.253  Sum_probs=24.5

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +|..+++.||||+|||++|+.|++.+..
T Consensus        14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~   41 (172)
T PRK06547         14 GMITVLIDGRSGSGKTTLAGALAARTGF   41 (172)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5578889999999999999999998644

>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]

Probab=97.04  E-value=0.0021  Score=74.22  Aligned_cols=179  Identities=15%  Similarity=0.102  Sum_probs=106.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC----e-eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL----G-LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p----~-~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +.+.|...+...+.+.+..++..+..-...+.|    . ++++.||||+|||+.|.+.+..+.-      .++.+|.+..
T Consensus       320 k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~------~v~E~Nas~~  393 (871)
T KOG1968|consen  320 KALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGF------KVVEKNASDV  393 (871)
T ss_pred             HhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccc------ceeecCcccc
Confidence            345566555556666665541101001111223    1 4689999999999999999999866      7888887765


Q ss_pred             CchhhhhhHHh------HHHHH--------HHhCCCCeEEeccccccCH---HHHHHHHHhhhhccccccccCCeEeecC
Q 036633          281 TELESIKHFFD------SLAAL--------VKKRPYSVVLFDKIEKANS---SILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       281 ~~~~~~s~liG------~lt~a--------l~~~p~~VlllDEIeka~~---~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      ........-+|      .+.+.        .....+.||++||++-+..   +.+..+-+++..-  .            
T Consensus       394 RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks--~------------  459 (871)
T KOG1968|consen  394 RSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKS--S------------  459 (871)
T ss_pred             ccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHhc--c------------
Confidence            53322222223      11111        1123455999999998766   5666677777643  2            


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCC-hhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFK-PSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~-p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                       .=+|||+|-                      ..++ ..-+.|-...+.|.   ..+.+.+..-+-..+.       ..+
T Consensus       460 -~Piv~~cnd----------------------r~~p~sr~~~~~~~~l~f~---kP~~~~i~~ri~si~~-------se~  506 (871)
T KOG1968|consen  460 -RPLVCTCND----------------------RNLPKSRALSRACSDLRFS---KPSSELIRSRIMSICK-------SEG  506 (871)
T ss_pred             -CCeEEEecC----------------------CCCccccchhhhcceeeec---CCcHHHHHhhhhhhhc-------ccc
Confidence             117888883                      2232 22344433567888   7777766655554442       233


Q ss_pred             CccccCCHHHHHHHHhcC
Q 036633          423 AVIVCPSTSALVHIASNA  440 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~  440 (550)
                         +.++++.++-+...+
T Consensus       507 ---~ki~~~~l~~~s~~~  521 (871)
T KOG1968|consen  507 ---IKISDDVLEEISKLS  521 (871)
T ss_pred             ---eecCcHHHHHHHHhc
Confidence               468999999888754

>PRK08233 hypothetical protein; Provisional

Probab=97.01  E-value=0.0019  Score=60.64  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=28.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      ..+.+.|+||+|||++|+.|+..+..     .+++.+|.-
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~~-----~~~~~~d~~   38 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLKN-----SKALYFDRY   38 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCC-----CceEEECCE
Confidence            57889999999999999999998853     155666544

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=97.01  E-value=0.0031  Score=60.86  Aligned_cols=94  Identities=10%  Similarity=0.223  Sum_probs=61.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL  318 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~  318 (550)
                      .+++|.|+-|+|||+..+.|....|.   ..       +.....+....        .+..+  -++.+||++.....-+
T Consensus        53 ~~lvl~G~QG~GKStf~~~L~~~~~~---d~-------~~~~~~kd~~~--------~l~~~--~iveldEl~~~~k~~~  112 (198)
T PF05272_consen   53 TVLVLVGKQGIGKSTFFRKLGPEYFS---DS-------INDFDDKDFLE--------QLQGK--WIVELDELDGLSKKDV  112 (198)
T ss_pred             eeeeEecCCcccHHHHHHHHhHHhcc---Cc-------cccCCCcHHHH--------HHHHh--HheeHHHHhhcchhhH
Confidence            78999999999999999999877655   11       11111122221        22222  3899999999998888


Q ss_pred             HHHHHhhhhccccccccC-CeE-ee-cCCeEEEEeCCC
Q 036633          319 NLLLKILKTDFNRKATRG-IAA-FD-LTNTLIIMTSDL  353 (550)
Q Consensus       319 ~~Ll~~ld~g~~~~l~d~-g~~-vd-~~~~iiI~TsN~  353 (550)
                      +.|-.++...... ++-. |+. .+ .++++||.|||.
T Consensus       113 ~~lK~~iT~~~~~-~R~pY~~~~~~~~R~~~figTtN~  149 (198)
T PF05272_consen  113 EALKSFITRRTDT-YRPPYGRDPEEFPRRAVFIGTTND  149 (198)
T ss_pred             HHHHHHhccccee-eecCCcCcceeeceeEEEEeccCC
Confidence            8888887655323 3333 322 33 466789999995

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=97.00  E-value=0.0052  Score=58.61  Aligned_cols=26  Identities=31%  Similarity=0.348  Sum_probs=24.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -++-+.||.|.|||++.+.||..|..
T Consensus        29 ei~GlLG~NGAGKTT~LRmiatlL~P   54 (245)
T COG4555          29 EITGLLGENGAGKTTLLRMIATLLIP   54 (245)
T ss_pred             eEEEEEcCCCCCchhHHHHHHHhccC
Confidence            57789999999999999999999976

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.99  E-value=0.0025  Score=62.44  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=23.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++-++||||+|||+++++|+-....
T Consensus        34 e~lgivGeSGsGKSTL~r~l~Gl~~p   59 (252)
T COG1124          34 ETLGIVGESGSGKSTLARLLAGLEKP   59 (252)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhcccCC
Confidence            68999999999999999999976644

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.99  E-value=0.0045  Score=61.03  Aligned_cols=40  Identities=23%  Similarity=0.321  Sum_probs=29.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE  282 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~  282 (550)
                      --++|.||||+|||++.+.|-+.+-.   ++ --|.||-.+.++
T Consensus        28 ef~vliGpSGsGKTTtLkMINrLiep---t~-G~I~i~g~~i~~   67 (309)
T COG1125          28 EFLVLIGPSGSGKTTTLKMINRLIEP---TS-GEILIDGEDISD   67 (309)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCC---CC-ceEEECCeeccc
Confidence            46789999999999999999988765   33 345665544443

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.99  E-value=0.0027  Score=59.92  Aligned_cols=84  Identities=21%  Similarity=0.293  Sum_probs=52.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe---cCCC--------------------Cchhhhhh-----HH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD---MGNY--------------------TELESIKH-----FF  290 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id---~s~~--------------------~~~~~~s~-----li  290 (550)
                      ..+.+.||+|+|||+++++|+..+..   .... +.++   .+.+                    -...++..     |-
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS  102 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGLEEP---DSGS-ILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLS  102 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC---CceE-EEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCC
Confidence            68889999999999999999976543   1111 1111   1110                    00011111     11


Q ss_pred             -h-----HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633          291 -D-----SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT  327 (550)
Q Consensus       291 -G-----~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~  327 (550)
                       |     .+..++-..| .++++||-- -+++.....|.+++..
T Consensus       103 ~G~~qr~~la~al~~~p-~llilDEP~~~LD~~~~~~l~~~l~~  145 (178)
T cd03229         103 GGQQQRVALARALAMDP-DVLLLDEPTSALDPITRREVRALLKS  145 (178)
T ss_pred             HHHHHHHHHHHHHHCCC-CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence             2     5666777777 799999975 4678878888877764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.98  E-value=0.0012  Score=60.98  Aligned_cols=87  Identities=16%  Similarity=0.174  Sum_probs=56.5

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh------------hhhHHhHHHHHHHhCCCCe
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES------------IKHFFDSLAALVKKRPYSV  304 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~------------~s~liG~lt~al~~~p~~V  304 (550)
                      +|.++.|+|.||+|||++|++|.+.|+.   ...+.+.+|...+.....            ..+-++.+...+.+.. .+
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~---~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G-~i   76 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFA---RGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQG-II   76 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHH---TTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTT-SE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCC-Ce
Confidence            3578999999999999999999999998   667888888766553211            1112224444444433 56


Q ss_pred             EEeccccccCHHHHHHHHHhhhhc
Q 036633          305 VLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       305 lllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      ++..=|. ...+..+...+.+.++
T Consensus        77 vIva~is-p~~~~R~~~R~~~~~~   99 (156)
T PF01583_consen   77 VIVAFIS-PYREDREWARELIPNE   99 (156)
T ss_dssp             EEEE-----SHHHHHHHHHHHHTT
T ss_pred             EEEeecc-CchHHHHHHHHhCCcC
Confidence            6666333 3367778888888775

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=96.97  E-value=0.0041  Score=69.93  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.++||||+|||++++.|...+
T Consensus       377 ~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        377 QRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            677999999999999999999987

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.97  E-value=0.003  Score=60.14  Aligned_cols=82  Identities=21%  Similarity=0.338  Sum_probs=50.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh--hh--------h------hHHhHHHHHHHhCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE--SI--------K------HFFDSLAALVKKRP  301 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~--~~--------s------~liG~lt~al~~~p  301 (550)
                      ..++|+||+|+|||+++++|...+..   .. ..+.+ |..++.-.+  .+        .      .+...+..+++..|
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~~~i~~---~~-~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~p  101 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALLAFIPP---DE-RIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRP  101 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCC---CC-CEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCC
Confidence            68999999999999999999988754   22 22222 111111000  00        0      00013445667777


Q ss_pred             CCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          302 YSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       302 ~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                       .++++.|+-.  ++... +++....|
T Consensus       102 -d~i~igEir~--~ea~~-~~~a~~tG  124 (186)
T cd01130         102 -DRIIVGEVRG--GEALD-LLQAMNTG  124 (186)
T ss_pred             -CEEEEEccCc--HHHHH-HHHHHhcC
Confidence             7999999974  55554 67777888

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=96.97  E-value=0.0055  Score=63.88  Aligned_cols=82  Identities=17%  Similarity=0.313  Sum_probs=54.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCc---hhhhh-------------hHHhHHHHHHHhCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTE---LESIK-------------HFFDSLAALVKKRP  301 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~---~~~~s-------------~liG~lt~al~~~p  301 (550)
                      ++++++||||+|||++.++|...+..   . ..++.+ |-.|+.-   ++.++             .+-..+..++|.+|
T Consensus       161 ~nili~G~tgSGKTTll~aL~~~ip~---~-~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~P  236 (332)
T PRK13900        161 KNIIISGGTSTGKTTFTNAALREIPA---I-ERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRP  236 (332)
T ss_pred             CcEEEECCCCCCHHHHHHHHHhhCCC---C-CeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCC
Confidence            69999999999999999999998865   2 234443 2222221   00000             00114556777788


Q ss_pred             CCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          302 YSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       302 ~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                       .+|++.|+--  ++... +++.+..|
T Consensus       237 -D~IivGEiR~--~ea~~-~l~a~~tG  259 (332)
T PRK13900        237 -DRIIVGELRG--AEAFS-FLRAINTG  259 (332)
T ss_pred             -CeEEEEecCC--HHHHH-HHHHHHcC
Confidence             7999999984  56654 68888888

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=96.97  E-value=0.0038  Score=60.86  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=22.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|.++|+..+.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          29 EIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5889999999999999999998764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.97  E-value=0.006  Score=59.08  Aligned_cols=25  Identities=36%  Similarity=0.531  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|+++|+..+.
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5889999999999999999998764

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.96  E-value=0.069  Score=61.11  Aligned_cols=86  Identities=13%  Similarity=0.209  Sum_probs=50.1

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhc-cCCCCCCceeEEecCCCCchh-----hhhhHHh----------HHHHHHHh-C
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELY-DNNDNDNHLIHFDMGNYTELE-----SIKHFFD----------SLAALVKK-R  300 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~-~~~~~~~~li~id~s~~~~~~-----~~s~liG----------~lt~al~~-~  300 (550)
                      +.+++|+||+|+|||+++..||..+. ..  ....+.-+++..|.-..     ......|          .+.+++.. .
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~--G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~  262 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVARE--GADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG  262 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHc--CCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc
Confidence            47999999999999999999887662 20  12234444444443111     1112222          44444443 4


Q ss_pred             CCCeEEeccccccCH--HHHHHHHHhh
Q 036633          301 PYSVVLFDKIEKANS--SILNLLLKIL  325 (550)
Q Consensus       301 p~~VlllDEIeka~~--~v~~~Ll~~l  325 (550)
                      .+.+||+|=....|.  .+...+-.+.
T Consensus       263 ~~D~VLIDTAGRs~~d~~l~eel~~l~  289 (767)
T PRK14723        263 DKHLVLIDTVGMSQRDRNVSEQIAMLC  289 (767)
T ss_pred             CCCEEEEeCCCCCccCHHHHHHHHHHh
Confidence            568999999987663  3444443333

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.95  E-value=0.0033  Score=59.08  Aligned_cols=84  Identities=19%  Similarity=0.296  Sum_probs=52.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC--------------------CCchhhhhh---HH-h---
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN--------------------YTELESIKH---FF-D---  291 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~--------------------~~~~~~~s~---li-G---  291 (550)
                      ..+.++||+|+|||++.+.|+..+..   .... +.+|-..                    +-...++..   |- |   
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~---~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~q  102 (173)
T cd03230          27 EIYGLLGPNGAGKTTLIKIILGLLKP---DSGE-IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQ  102 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCC---CCeE-EEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHH
Confidence            58899999999999999999987643   1111 1111100                    000011111   11 2   


Q ss_pred             --HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhh
Q 036633          292 --SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKT  327 (550)
Q Consensus       292 --~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~  327 (550)
                        .+..++-..| .|+++||.- .+++.....+++++..
T Consensus       103 rv~laral~~~p-~illlDEPt~~LD~~~~~~l~~~l~~  140 (173)
T cd03230         103 RLALAQALLHDP-ELLILDEPTSGLDPESRREFWELLRE  140 (173)
T ss_pred             HHHHHHHHHcCC-CEEEEeCCccCCCHHHHHHHHHHHHH
Confidence              5666677777 799999985 4567777777777764

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF14516 AAA_35: AAA-like domain

Probab=96.95  E-value=0.017  Score=60.37  Aligned_cols=176  Identities=11%  Similarity=0.136  Sum_probs=98.7

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch--hhhh
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL--ESIK  287 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~--~~~s  287 (550)
                      +...+-+.+.+.+...            +..+.+.||-.+|||++...+.+.+..   .....+.+||......  ....
T Consensus        15 ~R~~~e~~~~~~i~~~------------G~~~~I~apRq~GKTSll~~l~~~l~~---~~~~~v~id~~~~~~~~~~~~~   79 (331)
T PF14516_consen   15 ERPPAEQECYQEIVQP------------GSYIRIKAPRQMGKTSLLLRLLERLQQ---QGYRCVYIDLQQLGSAIFSDLE   79 (331)
T ss_pred             CchHHHHHHHHHHhcC------------CCEEEEECcccCCHHHHHHHHHHHHHH---CCCEEEEEEeecCCCcccCCHH
Confidence            4444566666666532            157889999999999999999888876   5667888998876431  1111


Q ss_pred             hHHh--------------------------------HHHHHH-HhCC-CCeEEeccccccCH--HHHHHHHHhhhhcccc
Q 036633          288 HFFD--------------------------------SLAALV-KKRP-YSVVLFDKIEKANS--SILNLLLKILKTDFNR  331 (550)
Q Consensus       288 ~liG--------------------------------~lt~al-~~~p-~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~  331 (550)
                      .+..                                .+.+.+ .... .=||+|||||.+..  .+.+-|+..|...  .
T Consensus        80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~--~  157 (331)
T PF14516_consen   80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSW--Y  157 (331)
T ss_pred             HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHH--H
Confidence            1111                                122221 1211 24889999998864  4555555555443  2


Q ss_pred             ccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          332 KATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       332 ~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                       - .....-.+++..+|++........                ...-.++|  .+..-|...   +++.+++..++..  
T Consensus       158 -~-~~~~~~~~~~L~li~~~~t~~~~~----------------~~~~~SPF--NIg~~i~L~---~Ft~~ev~~L~~~--  212 (331)
T PF14516_consen  158 -E-QRKNNPIWQKLRLILAGSTEDYII----------------LDINQSPF--NIGQPIELP---DFTPEEVQELAQR--  212 (331)
T ss_pred             -H-hcccCcccceEEEEEecCcccccc----------------cCCCCCCc--ccccceeCC---CCCHHHHHHHHHh--
Confidence             1 101111233344444332211110                11223345  333456666   9999998876543  


Q ss_pred             HHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633          412 EETKRRNNDSKAVIVCPSTSALVHIASN  439 (550)
Q Consensus       412 ~~~~~~l~~~~~~~l~~~~~a~~~L~~~  439 (550)
                               +   .+.+++..++.|...
T Consensus       213 ---------~---~~~~~~~~~~~l~~~  228 (331)
T PF14516_consen  213 ---------Y---GLEFSQEQLEQLMDW  228 (331)
T ss_pred             ---------h---hccCCHHHHHHHHHH
Confidence                     2   336777778877764

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.93  E-value=0.0043  Score=60.14  Aligned_cols=25  Identities=32%  Similarity=0.561  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +.+.+.||+|+|||+|+++|+..+.
T Consensus        26 g~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          26 GMYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             CcEEEECCCCCCHHHHHHHHhCCCC
Confidence            5889999999999999999997654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=96.93  E-value=0.0054  Score=59.76  Aligned_cols=26  Identities=15%  Similarity=0.056  Sum_probs=23.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.+.||+|+|||++.+.|+..+..
T Consensus        14 e~~~l~G~NGsGKSTLlk~i~Gl~~~   39 (213)
T PRK15177         14 EHIGILAAPGSGKTTLTRLLCGLDAP   39 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccC
Confidence            58889999999999999999987654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.93  E-value=0.0063  Score=58.91  Aligned_cols=25  Identities=40%  Similarity=0.562  Sum_probs=22.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||++.++|+....
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         29 EALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            6889999999999999999998764

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=96.92  E-value=0.0059  Score=56.64  Aligned_cols=26  Identities=27%  Similarity=0.239  Sum_probs=20.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +-+.+++++|+|||++|-.+|-..-+
T Consensus         3 G~i~vy~g~G~Gkt~~a~g~~~ra~~   28 (159)
T cd00561           3 GLIQVYTGNGKGKTTAALGLALRALG   28 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            45667777899999999888876655

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=96.92  E-value=0.0051  Score=70.69  Aligned_cols=26  Identities=23%  Similarity=0.152  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus       492 ~~iaIvG~sGsGKSTLlklL~gl~~p  517 (694)
T TIGR03375       492 EKVAIIGRIGSGKSTLLKLLLGLYQP  517 (694)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57899999999999999999987654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=96.92  E-value=0.0038  Score=71.22  Aligned_cols=26  Identities=23%  Similarity=0.206  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.++|++|+||||++|.+...+..
T Consensus       500 e~vaIvG~SGsGKSTL~KLL~gly~p  525 (709)
T COG2274         500 EKVAIVGRSGSGKSTLLKLLLGLYKP  525 (709)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            46899999999999999999987654

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.91  E-value=0.0079  Score=64.34  Aligned_cols=121  Identities=20%  Similarity=0.179  Sum_probs=74.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHh---CCCCeEEeccccccCHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKK---RPYSVVLFDKIEKANSS  316 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~---~p~~VlllDEIeka~~~  316 (550)
                      ..++.||-+||||++.+.+.+.+..      .++.++.-+.......  + .....+...   .....+|||||+.... 
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~~------~~iy~~~~d~~~~~~~--l-~d~~~~~~~~~~~~~~yifLDEIq~v~~-  108 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLE------EIIYINFDDLRLDRIE--L-LDLLRAYIELKEREKSYIFLDEIQNVPD-  108 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCCc------ceEEEEecchhcchhh--H-HHHHHHHHHhhccCCceEEEecccCchh-
Confidence            8999999999999999999887754      3666665444322111  1 111111111   1336899999997754 


Q ss_pred             HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCC
Q 036633          317 ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAV  396 (550)
Q Consensus       317 v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~  396 (550)
                      .+..+-.+.|.|  . .           -++|.+||...                  +.+...+.|.+|. ..+.+.   
T Consensus       109 W~~~lk~l~d~~--~-~-----------~v~itgsss~l------------------l~~~~~~~L~GR~-~~~~l~---  152 (398)
T COG1373         109 WERALKYLYDRG--N-L-----------DVLITGSSSSL------------------LSKEISESLAGRG-KDLELY---  152 (398)
T ss_pred             HHHHHHHHHccc--c-c-----------eEEEECCchhh------------------hccchhhhcCCCc-eeEEEC---
Confidence            666666666767  4 1           23555555421                  1123345677886 677888   


Q ss_pred             CCCHHHHHHH
Q 036633          397 PLLDTTRLLL  406 (550)
Q Consensus       397 pL~~e~i~~I  406 (550)
                      |||-.+....
T Consensus       153 PlSF~Efl~~  162 (398)
T COG1373         153 PLSFREFLKL  162 (398)
T ss_pred             CCCHHHHHhh
Confidence            8998877543

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=96.91  E-value=0.0007  Score=63.78  Aligned_cols=34  Identities=24%  Similarity=0.566  Sum_probs=27.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      ..++|.||||+|||++|+.|++.+..      ++++++..
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~------~~~~~~~D   36 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAE------PWLHFGVD   36 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCC------CccccCcc
Confidence            37899999999999999999998755      56655543

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK03839 putative kinase; Provisional

Probab=96.91  E-value=0.00083  Score=63.46  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=22.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++|.|+||+|||++|+.||+.+.-
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~   26 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGY   26 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999999854

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.91  E-value=0.0061  Score=62.94  Aligned_cols=82  Identities=15%  Similarity=0.332  Sum_probs=51.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCch--hhhh-------------hHHhHHHHHHHhCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTEL--ESIK-------------HFFDSLAALVKKRPY  302 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~--~~~s-------------~liG~lt~al~~~p~  302 (550)
                      .+++++||+|+|||+++++|...+..   .. ..+.++ ..++.-.  ..+.             .+--.+..+++..| 
T Consensus       145 ~~ili~G~tGsGKTTll~al~~~~~~---~~-~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p-  219 (308)
T TIGR02788       145 KNIIISGGTGSGKTTFLKSLVDEIPK---DE-RIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP-  219 (308)
T ss_pred             CEEEEECCCCCCHHHHHHHHHccCCc---cc-cEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCC-
Confidence            69999999999999999999988754   22 233332 1122111  0000             00004455677777 


Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhc
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .++++||+-.  .++.. +++.+..|
T Consensus       220 d~ii~gE~r~--~e~~~-~l~a~~~g  242 (308)
T TIGR02788       220 DRIILGELRG--DEAFD-FIRAVNTG  242 (308)
T ss_pred             CeEEEeccCC--HHHHH-HHHHHhcC
Confidence            7999999984  56654 56666666

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK13947 shikimate kinase; Provisional

Probab=96.90  E-value=0.00088  Score=62.56  Aligned_cols=31  Identities=26%  Similarity=0.295  Sum_probs=26.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      ++++.|+||+|||++|+.||+.+.-      +|+..|
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~------~~id~d   33 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSF------GFIDTD   33 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCC------CEEECc
Confidence            6899999999999999999999866      665544

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=96.90  E-value=0.0045  Score=69.69  Aligned_cols=26  Identities=19%  Similarity=0.317  Sum_probs=23.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus       362 ~~v~IvG~sGsGKSTLl~lL~gl~~p  387 (588)
T PRK13657        362 QTVAIVGPTGAGKSTLINLLQRVFDP  387 (588)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcCC
Confidence            57899999999999999999987654

>COG1485 Predicted ATPase [General function prediction only]

Probab=96.90  E-value=0.0084  Score=61.80  Aligned_cols=101  Identities=17%  Similarity=0.268  Sum_probs=62.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc-hhh-hhhHHh------HHHHHHHhCCCCeEEeccc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE-LES-IKHFFD------SLAALVKKRPYSVVLFDKI  310 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~-~~~-~s~liG------~lt~al~~~p~~VlllDEI  310 (550)
                      ..+.|+||-|+|||.|--..-..+..   ..+  .++..-.|+. .|. ...+.|      .+...+. ..+.||+|||+
T Consensus        66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~---~~k--~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~-~~~~vLCfDEF  139 (367)
T COG1485          66 RGLYLWGGVGRGKTMLMDLFYESLPG---ERK--RRLHFHRFMARVHQRLHTLQGQTDPLPPIADELA-AETRVLCFDEF  139 (367)
T ss_pred             ceEEEECCCCccHHHHHHHHHhhCCc---ccc--ccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHH-hcCCEEEeeee
Confidence            78999999999999999999988866   221  2233223321 111 223334      2222222 23469999999


Q ss_pred             cccCHH---HHHHHHHh-hhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633          311 EKANSS---ILNLLLKI-LKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV  361 (550)
Q Consensus       311 eka~~~---v~~~Ll~~-ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~  361 (550)
                      +=-+..   ++.-|+.. +.+|                +++++|||...+.+...
T Consensus       140 ~VtDI~DAMiL~rL~~~Lf~~G----------------V~lvaTSN~~P~~LY~d  178 (367)
T COG1485         140 EVTDIADAMILGRLLEALFARG----------------VVLVATSNTAPDNLYKD  178 (367)
T ss_pred             eecChHHHHHHHHHHHHHHHCC----------------cEEEEeCCCChHHhccc
Confidence            865554   34433333 3444                46899999988887653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.89  E-value=0.001  Score=68.86  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=22.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .-+.|+||||||||++.++||-....
T Consensus        30 ef~vllGPSGcGKSTlLr~IAGLe~~   55 (338)
T COG3839          30 EFVVLLGPSGCGKSTLLRMIAGLEEP   55 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            47889999999999999999976643

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=96.89  E-value=0.0053  Score=62.96  Aligned_cols=26  Identities=38%  Similarity=0.539  Sum_probs=23.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|.||+|.|||++.++|+..+..
T Consensus        32 ei~gllG~NGAGKTTllk~l~gl~~p   57 (293)
T COG1131          32 EIFGLLGPNGAGKTTLLKILAGLLKP   57 (293)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCcCC
Confidence            58999999999999999999988764

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.89  E-value=0.0049  Score=60.14  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=20.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      ..++|+||.|+|||++.+.++.
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            6789999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PLN02200 adenylate kinase family protein

Probab=96.87  E-value=0.0011  Score=65.80  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=29.8

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .|..++++||||+|||++|+.||+.+        .+.+++++++
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~--------g~~his~gdl   77 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETF--------GFKHLSAGDL   77 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh--------CCeEEEccHH
Confidence            34788999999999999999999986        3567777665

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=96.87  E-value=0.021  Score=59.43  Aligned_cols=62  Identities=16%  Similarity=0.129  Sum_probs=46.2

Q ss_pred             hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      .+...|.+.+..+..+...+-..        +..-|.++.++|.+|||||++.+.+-+.+..      +.+.++|-
T Consensus         3 ~l~~~v~~Re~qi~~L~~Llg~~--------~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------~~vw~n~~   64 (438)
T KOG2543|consen    3 VLEPNVPCRESQIRRLKSLLGNN--------SCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL------ENVWLNCV   64 (438)
T ss_pred             ccccCccchHHHHHHHHHHhCCC--------CcccceeEEEeccCCCchhHHHHHHHhhcCC------cceeeehH
Confidence            45667888888888776666543        2234577799999999999999999988755      66666654

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.86  E-value=0.003  Score=59.86  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec---CCCCchhhhhhHHh-----HHHHHHHhCCCCeEEeccc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM---GNYTELESIKHFFD-----SLAALVKKRPYSVVLFDKI  310 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~---s~~~~~~~~s~liG-----~lt~al~~~p~~VlllDEI  310 (550)
                      ..+.+.||+|+|||+|.+.|+..+..   .... +.++-   +-.......|  -|     .+..++-..| .++++||.
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~-i~~~g~~i~~~~q~~~LS--gGq~qrv~laral~~~p-~lllLDEP   98 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIP---NGDN-DEWDGITPVYKPQYIDLS--GGELQRVAIAAALLRNA-TFYLFDEP   98 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCC---CCcE-EEECCEEEEEEcccCCCC--HHHHHHHHHHHHHhcCC-CEEEEECC
Confidence            68899999999999999999987654   2222 33321   1111110111  12     5666777777 79999998


Q ss_pred             c-ccCHHHHHHHHHhhhh
Q 036633          311 E-KANSSILNLLLKILKT  327 (550)
Q Consensus       311 e-ka~~~v~~~Ll~~ld~  327 (550)
                      - .+++.....+.+.+..
T Consensus        99 ts~LD~~~~~~l~~~l~~  116 (177)
T cd03222          99 SAYLDIEQRLNAARAIRR  116 (177)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            5 5677777767666653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]

Probab=96.85  E-value=0.0064  Score=65.93  Aligned_cols=179  Identities=16%  Similarity=0.106  Sum_probs=101.9

Q ss_pred             HHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC--CC-eeEEEeccCCCcHHHHHHHHHHHhccC----CCC
Q 036633          196 RYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR--QL-GLFLFAGPNCSGKAELAKAIANELYDN----NDN  268 (550)
Q Consensus       196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~--~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~----~~~  268 (550)
                      .+.-|...|.-.|+|++..+++|.-.+.-.-  ...+.+..  |. -++|++|.|.|-|+-|.+.+-+.....    |.+
T Consensus       291 iFdlLa~SLAPSI~GH~~vKkAillLLlGGv--Ek~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRG  368 (818)
T KOG0479|consen  291 IFDLLARSLAPSIYGHDYVKKAILLLLLGGV--EKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRG  368 (818)
T ss_pred             HHHHHhhccCcccccHHHHHHHHHHHHhccc--eeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCC
Confidence            3556677788999999999998776654321  11222222  23 689999999999999999887654320    000


Q ss_pred             CCceeEEecCCCCchhhhhhHHh--HH-HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC--CeEeec-
Q 036633          269 DNHLIHFDMGNYTELESIKHFFD--SL-AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG--IAAFDL-  342 (550)
Q Consensus       269 ~~~li~id~s~~~~~~~~s~liG--~l-t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~--g~~vd~-  342 (550)
                      .+- +-+..+--++     +--|  .| .+|.--.-.+||+|||++|++.-=..++-.+++.|  + +|-.  |-...+ 
T Consensus       369 SSG-VGLTAAVTtD-----~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQq--t-VTIaKAGIHasLN  439 (818)
T KOG0479|consen  369 SSG-VGLTAAVTTD-----QETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQ--T-VTIAKAGIHASLN  439 (818)
T ss_pred             CCC-ccceeEEeec-----cccchhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcc--e-EEeEeccchhhhc
Confidence            000 0000000000     0011  11 11111123589999999999988788899999999  5 5554  533222 


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~  393 (550)
                      -+|-++++.|.-......      +...++.  =.++..|++|||-++...
T Consensus       440 ARCSVlAAANPvyG~Yd~------~k~P~eN--IgLpDSLLSRFDLlFv~l  482 (818)
T KOG0479|consen  440 ARCSVLAAANPVYGQYDQ------SKTPMEN--IGLPDSLLSRFDLLFVVL  482 (818)
T ss_pred             cceeeeeecCccccccCC------CCChhhc--cCCcHHHHhhhcEEEEEe
Confidence            235677888863211100      0000100  145778999999765544

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.85  E-value=0.00099  Score=60.85  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=22.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +++++||||+|||++|+.||+.+.-
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~   25 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGL   25 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999999844

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK00625 shikimate kinase; Provisional

Probab=96.85  E-value=0.001  Score=62.76  Aligned_cols=25  Identities=28%  Similarity=0.331  Sum_probs=23.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +++|+|+||+|||++++.||+.+.-
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~   26 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSL   26 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5899999999999999999999854

>PF13337 Lon_2: Putative ATP-dependent Lon protease

Probab=96.85  E-value=0.0016  Score=69.46  Aligned_cols=183  Identities=11%  Similarity=0.169  Sum_probs=100.8

Q ss_pred             CCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEe
Q 036633          166 KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFA  244 (550)
Q Consensus       166 ~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~  244 (550)
                      +..-|.++.-+++-+..|.-...+..  .+++.-|.                  +.+--.           .+ -+++=.
T Consensus       166 R~~FT~eEWiD~LlrS~G~eP~~~~~--r~Kl~~L~------------------RLiPlV-----------E~N~NliEL  214 (457)
T PF13337_consen  166 RKEFTTEEWIDLLLRSIGYEPSGFSE--RQKLLLLA------------------RLIPLV-----------ERNYNLIEL  214 (457)
T ss_pred             HHhcCHHHHHHHHHHhcCCCccccCH--HHHHHHHH------------------hHHHhc-----------ccccceEEE
Confidence            44566666677777777776666543  23332221                  111111           22 689999


Q ss_pred             ccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHH-HHHHH-hCCCCeEEeccccccC---HHHHH
Q 036633          245 GPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSL-AALVK-KRPYSVVLFDKIEKAN---SSILN  319 (550)
Q Consensus       245 Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~l-t~al~-~~p~~VlllDEIeka~---~~v~~  319 (550)
                      ||.|||||++=+-++.+..          .+..+..    +++.||... +...- =.-+.+|.||||....   ++..+
T Consensus       215 gPrGTGKS~vy~eiSp~~~----------liSGG~~----T~A~LFyn~~~~~~GlV~~~D~VafDEv~~i~f~d~d~i~  280 (457)
T PF13337_consen  215 GPRGTGKSYVYKEISPYGI----------LISGGQV----TVAKLFYNMSTGQIGLVGRWDVVAFDEVAGIKFKDKDEIQ  280 (457)
T ss_pred             cCCCCCceeehhhcCcccE----------EEECCCc----chHHheeeccCCcceeeeeccEEEEEeccCcccCChHHHH
Confidence            9999999999776664421          1221111    344444310 00000 0135799999998765   77779


Q ss_pred             HHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCC-ChhhhhhccceeEecCCCCC
Q 036633          320 LLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLF-KPSLLKLLDKLVVIDLAVPL  398 (550)
Q Consensus       320 ~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f-~p~ll~Rid~ii~f~~~~pL  398 (550)
                      +|-..|++|  . ++.++..+ ..++=+||..|.......- ..   ...+...+-+.| ..+|+.||...++=--.|.+
T Consensus       281 imK~YMesG--~-fsRG~~~i-~a~as~vf~GNi~~~v~~~-~~---~~~lf~~lP~~~~DsAflDRiH~~iPGWeiPk~  352 (457)
T PF13337_consen  281 IMKDYMESG--S-FSRGKEEI-NADASMVFVGNINQSVENM-LK---TSHLFEPLPEEMRDSAFLDRIHGYIPGWEIPKI  352 (457)
T ss_pred             HHHHHHhcc--c-eeeccccc-ccceeEEEEcCcCCcchhc-cc---cchhhhhcCHHHHHHHHHhHhheeccCcccccc
Confidence            999999999  7 77763222 2445588888876322110 00   011222222233 57899999666552112266


Q ss_pred             CHH
Q 036633          399 LDT  401 (550)
Q Consensus       399 ~~e  401 (550)
                      +.+
T Consensus       353 ~~e  355 (457)
T PF13337_consen  353 RPE  355 (457)
T ss_pred             CHH
Confidence            654

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=96.84  E-value=0.0055  Score=63.00  Aligned_cols=85  Identities=22%  Similarity=0.325  Sum_probs=52.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCch--hh--------hhhHHhHHHHHHHhCCCCeEEe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTEL--ES--------IKHFFDSLAALVKKRPYSVVLF  307 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~--~~--------~s~liG~lt~al~~~p~~Vlll  307 (550)
                      ++++++||+|+|||+++++|...+.... .+..++.+. ..|+.-.  +.        ...+-..+..++|..| ..|++
T Consensus       133 ~~ilI~G~tGSGKTTll~al~~~i~~~~-~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~p-D~iiv  210 (299)
T TIGR02782       133 KNILVVGGTGSGKTTLANALLAEIAKND-PTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRP-DRIIV  210 (299)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhhccC-CCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCC-CEEEE
Confidence            5899999999999999999998874300 122333321 1111100  00        0011114566778888 79999


Q ss_pred             ccccccCHHHHHHHHHhhhhc
Q 036633          308 DKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       308 DEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .|+-.  ++... +++.+..|
T Consensus       211 GEiR~--~ea~~-~l~a~~tG  228 (299)
T TIGR02782       211 GEVRG--GEALD-LLKAWNTG  228 (299)
T ss_pred             eccCC--HHHHH-HHHHHHcC
Confidence            99984  45554 57888888

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=96.84  E-value=0.0082  Score=59.10  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=22.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+++++|+..+.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (234)
T cd03251          29 ETVALVGPSGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccc
Confidence            5889999999999999999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14532 adenylate kinase; Provisional

Probab=96.84  E-value=0.001  Score=63.36  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=28.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      .++|.||||+|||++|+.||+.+        .+..++++++.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~--------g~~~is~~d~l   35 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEER--------GMVQLSTGDML   35 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc--------CCeEEeCcHHH
Confidence            47899999999999999999876        45667766554

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=96.83  E-value=0.0046  Score=68.65  Aligned_cols=26  Identities=27%  Similarity=0.303  Sum_probs=23.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||||+|||++++.|...+..
T Consensus       362 ~~vaIvG~SGsGKSTLl~lL~g~~~p  387 (529)
T TIGR02868       362 ERVAILGPSGSGKSTLLMLLTGLLDP  387 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            67899999999999999999987654

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.83  E-value=0.0047  Score=59.74  Aligned_cols=38  Identities=18%  Similarity=0.286  Sum_probs=32.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      ..++++||||+|||.+|..++.....   ...+.+.+++.+
T Consensus        13 ~i~~i~G~~GsGKT~l~~~~~~~~~~---~g~~v~yi~~e~   50 (209)
T TIGR02237        13 TITQIYGPPGSGKTNICMILAVNAAR---QGKKVVYIDTEG   50 (209)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCC
Confidence            68899999999999999999887655   455788888865

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.82  E-value=0.0071  Score=57.87  Aligned_cols=88  Identities=15%  Similarity=0.225  Sum_probs=50.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc---cCC---CCCCc-------eeEE--ecCCCCchhhhh----------hHH-h-
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY---DNN---DNDNH-------LIHF--DMGNYTELESIK----------HFF-D-  291 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~---~~~---~~~~~-------li~i--d~s~~~~~~~~s----------~li-G-  291 (550)
                      ..+.++||+|+|||++.++|+-...   ..|   ....+       -+.+  ....+....++.          .|- | 
T Consensus        34 e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe  113 (192)
T cd03232          34 TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQ  113 (192)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCHHH
Confidence            5889999999999999999996431   111   00000       0000  000110000111          111 2 


Q ss_pred             ----HHHHHHHhCCCCeEEeccccc-cCHHHHHHHHHhhhh
Q 036633          292 ----SLAALVKKRPYSVVLFDKIEK-ANSSILNLLLKILKT  327 (550)
Q Consensus       292 ----~lt~al~~~p~~VlllDEIek-a~~~v~~~Ll~~ld~  327 (550)
                          .+..++-..| .++++||.-. +++.....+++++.+
T Consensus       114 ~qrv~la~al~~~p-~vlllDEP~~~LD~~~~~~l~~~l~~  153 (192)
T cd03232         114 RKRLTIGVELAAKP-SILFLDEPTSGLDSQAAYNIVRFLKK  153 (192)
T ss_pred             hHHHHHHHHHhcCC-cEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence                5566677777 7999999754 577777777777764

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.82  E-value=0.0046  Score=68.90  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++.++||+|.|||++|..|-+.+..
T Consensus       495 e~vALVGPSGsGKSTiasLL~rfY~P  520 (716)
T KOG0058|consen  495 EVVALVGPSGSGKSTIASLLLRFYDP  520 (716)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            37899999999999999999987755

>PRK06762 hypothetical protein; Provisional

Probab=96.82  E-value=0.0014  Score=60.95  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=23.7

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |..++|+|+||+|||++|+.|++.+..
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~   28 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGR   28 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457889999999999999999998843

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=96.82  E-value=0.0062  Score=68.60  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+|++.|+..+..
T Consensus       368 e~iaIvG~SGsGKSTLl~lL~gl~~p  393 (592)
T PRK10790        368 GFVALVGHTGSGKSTLASLLMGYYPL  393 (592)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCC
Confidence            56799999999999999999987754

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit

Probab=96.82  E-value=0.0083  Score=67.19  Aligned_cols=89  Identities=17%  Similarity=0.268  Sum_probs=53.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC------------------------------chhhhhh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT------------------------------ELESIKH  288 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~------------------------------~~~~~s~  288 (550)
                      ..+++.|+||||||+++..|...+......... .++-+...+                              +..++.+
T Consensus       161 ~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~-~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHr  239 (586)
T TIGR01447       161 NFSLITGGPGTGKTTTVARLLLALVKQSPKQGK-LRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHR  239 (586)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCC-CcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhh
Confidence            388999999999999888776655321000000 122222211                              1223444


Q ss_pred             HHhHHH--HHH-----HhCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          289 FFDSLA--ALV-----KKRPYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       289 liG~lt--~al-----~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      ++|...  ...     +.-|..||++||+-..+...+..|++.+..+
T Consensus       240 lLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~~~  286 (586)
T TIGR01447       240 LLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKALPPN  286 (586)
T ss_pred             hhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhcCCC
Confidence            555110  001     1124679999999999999999999888655

This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=96.81  E-value=0.0042  Score=65.34  Aligned_cols=23  Identities=39%  Similarity=0.562  Sum_probs=22.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ++++.|.||||||.+|-.++..+
T Consensus         3 v~~I~G~aGTGKTvla~~l~~~l   25 (352)
T PF09848_consen    3 VILITGGAGTGKTVLALNLAKEL   25 (352)
T ss_pred             EEEEEecCCcCHHHHHHHHHHHh
Confidence            78999999999999999999998

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.81  E-value=0.006  Score=63.81  Aligned_cols=82  Identities=20%  Similarity=0.327  Sum_probs=52.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh--hhhh----------HHh---HHHHHHHhCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE--SIKH----------FFD---SLAALVKKRPY  302 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~--~~s~----------liG---~lt~al~~~p~  302 (550)
                      .+++++||+|+|||+++++|...+..   .+ .++.+ |..|+.-.+  .+..          -+.   .+..++|.+| 
T Consensus       163 ~nilI~G~tGSGKTTll~aLl~~i~~---~~-rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~p-  237 (344)
T PRK13851        163 LTMLLCGPTGSGKTTMSKTLISAIPP---QE-RLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRP-  237 (344)
T ss_pred             CeEEEECCCCccHHHHHHHHHcccCC---CC-CEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCC-
Confidence            69999999999999999999988755   22 33332 222222111  0000          001   3455777788 


Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhc
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      ..|++.|+--  ++... +++.+..|
T Consensus       238 D~IivGEiR~--~ea~~-~l~a~~tG  260 (344)
T PRK13851        238 DRILLGEMRD--DAAWA-YLSEVVSG  260 (344)
T ss_pred             CeEEEEeeCc--HHHHH-HHHHHHhC
Confidence            7899999984  45555 66777777

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=96.80  E-value=0.0011  Score=60.66  Aligned_cols=23  Identities=35%  Similarity=0.484  Sum_probs=21.0

Q ss_pred             EEEeccCCCcHHHHHHHHHHHhc
Q 036633          241 FLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ++|+||||+|||++|+.|++.+.
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~   24 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLG   24 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcC
Confidence            68999999999999999999853

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.79  E-value=0.0016  Score=61.24  Aligned_cols=37  Identities=27%  Similarity=0.285  Sum_probs=29.3

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      +|..++|.|+||+|||++|+.|++.+..   .....+.+|
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~---~~~~~~~~~   42 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYERLKL---KYSNVIYLD   42 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEe
Confidence            3478999999999999999999999875   333455555

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=96.79  E-value=0.00092  Score=63.36  Aligned_cols=32  Identities=44%  Similarity=0.699  Sum_probs=26.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      .+++.||||+||||+|+.||+.+        ++.++|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~~--------~i~hlstgd   33 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL--------GLPHLDTGD   33 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh--------CCcEEcHhH
Confidence            47999999999999999999995        577777433

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.79  E-value=0.01  Score=58.60  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=24.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      ..+++.||||+|||++|..++..+-.   ...+.+.++.
T Consensus        25 ~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~   60 (230)
T PRK08533         25 SLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVST   60 (230)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeC
Confidence            68999999999999997554443322   2234555543

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=96.77  E-value=0.0077  Score=52.65  Aligned_cols=25  Identities=40%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .+++.||||+|||+++-.++..+..
T Consensus         2 ~~~i~~~~G~GKT~~~~~~~~~~~~   26 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPILELLD   26 (144)
T ss_pred             CEEEECCCCCchhHHHHHHHHHHHh
Confidence            5799999999999999888877764

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=96.77  E-value=0.0056  Score=63.43  Aligned_cols=85  Identities=24%  Similarity=0.343  Sum_probs=53.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh--hhh-------hHHhHHHHHHHhCCCCeEEec
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE--SIK-------HFFDSLAALVKKRPYSVVLFD  308 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~--~~s-------~liG~lt~al~~~p~~VlllD  308 (550)
                      .+++++||||+|||+++++|...+.... ....++.+ |..++.-.+  .+.       .+-..+..++|.+| ..|++.
T Consensus       149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~-~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~P-D~IivG  226 (319)
T PRK13894        149 RNILVIGGTGSGKTTLVNAIINEMVIQD-PTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRP-DRILVG  226 (319)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhhhhcC-CCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCC-CEEEEe
Confidence            6999999999999999999998752100 22233332 233332111  000       01114566778888 799999


Q ss_pred             cccccCHHHHHHHHHhhhhc
Q 036633          309 KIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       309 EIeka~~~v~~~Ll~~ld~g  328 (550)
                      |+-.  ++... +++.+..|
T Consensus       227 EiR~--~Ea~~-~l~A~~tG  243 (319)
T PRK13894        227 EVRG--PEALD-LLMAWNTG  243 (319)
T ss_pred             ccCC--HHHHH-HHHHHHcC
Confidence            9984  45554 68888888

>PF13479 AAA_24: AAA domain

Probab=96.76  E-value=0.0033  Score=61.28  Aligned_cols=75  Identities=24%  Similarity=0.367  Sum_probs=42.8

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch------------hhhhhHHhHHHHHH-HhCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL------------ESIKHFFDSLAALV-KKRPYS  303 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~------------~~~s~liG~lt~al-~~~p~~  303 (550)
                      +|..++++||||+|||++|..+-+           .+.||+..=...            .+...+...+.+.. ...+|.
T Consensus         2 ~~~~~lIyG~~G~GKTt~a~~~~k-----------~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~   70 (213)
T PF13479_consen    2 KPIKILIYGPPGSGKTTLAASLPK-----------PLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYD   70 (213)
T ss_pred             CceEEEEECCCCCCHHHHHHhCCC-----------eEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCC
Confidence            346899999999999999988833           333333221100            01111111121111 246899


Q ss_pred             eEEeccccccCHHHHHHHH
Q 036633          304 VVLFDKIEKANSSILNLLL  322 (550)
Q Consensus       304 VlllDEIeka~~~v~~~Ll  322 (550)
                      +|+||.+..+-.-+....+
T Consensus        71 tiVIDsis~~~~~~~~~~~   89 (213)
T PF13479_consen   71 TIVIDSISWLEDMCLEYIC   89 (213)
T ss_pred             EEEEECHHHHHHHHHHHHh
Confidence            9999999876544433333

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.76  E-value=0.0011  Score=58.18  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=20.5

Q ss_pred             EEEeccCCCcHHHHHHHHHHHh
Q 036633          241 FLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      +++.|+||||||++|+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999999999986

...

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.76  E-value=0.024  Score=56.18  Aligned_cols=131  Identities=17%  Similarity=0.246  Sum_probs=73.1

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh-------hhhhH-----Hh--------HHHHH
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE-------SIKHF-----FD--------SLAAL  296 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~-------~~s~l-----iG--------~lt~a  296 (550)
                      .|-.+++.||+|+|||++...|-..+..   .-..++-+ ++......       .+..+     +.        .+.+.
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~~~~---~f~~I~l~-t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~   87 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYYLRH---KFDHIFLI-TPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKY   87 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhcc---cCCEEEEE-ecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHH
Confidence            3468899999999999999988877654   22233222 22211100       00000     00        11122


Q ss_pred             HH----h--CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhH
Q 036633          297 VK----K--RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRV  370 (550)
Q Consensus       297 l~----~--~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~  370 (550)
                      .+    .  .|..+|+||++.. ..--...+.+++-.|  |       ..   ++-+|+++-..                
T Consensus        88 ~~k~~~~k~~~~~LiIlDD~~~-~~~k~~~l~~~~~~g--R-------H~---~is~i~l~Q~~----------------  138 (241)
T PF04665_consen   88 IKKSPQKKNNPRFLIILDDLGD-KKLKSKILRQFFNNG--R-------HY---NISIIFLSQSY----------------  138 (241)
T ss_pred             hhhhcccCCCCCeEEEEeCCCC-chhhhHHHHHHHhcc--c-------cc---ceEEEEEeeec----------------
Confidence            22    1  2356999999864 222344577777777  5       22   23345444321                


Q ss_pred             HHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHH
Q 036633          371 NEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW  409 (550)
Q Consensus       371 ~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~  409 (550)
                           ...+|.++.-++.++.|+    .+..++..|...
T Consensus       139 -----~~lp~~iR~n~~y~i~~~----~s~~dl~~i~~~  168 (241)
T PF04665_consen  139 -----FHLPPNIRSNIDYFIIFN----NSKRDLENIYRN  168 (241)
T ss_pred             -----ccCCHHHhhcceEEEEec----CcHHHHHHHHHh
Confidence                 345888888887777665    577777666553

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=96.76  E-value=0.0075  Score=67.56  Aligned_cols=26  Identities=23%  Similarity=0.226  Sum_probs=23.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus       359 ~~v~IvG~sGsGKSTLl~lL~gl~~~  384 (571)
T TIGR02203       359 ETVALVGRSGSGKSTLVNLIPRFYEP  384 (571)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCC
Confidence            67799999999999999999988754

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=96.76  E-value=0.0059  Score=62.97  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=23.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|.||+|+|||++.++|+..+..
T Consensus        34 ei~gllGpNGaGKSTLl~~l~Gl~~p   59 (306)
T PRK13537         34 ECFGLLGPNGAGKTTTLRMLLGLTHP   59 (306)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            58899999999999999999987754

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.76  E-value=0.001  Score=61.65  Aligned_cols=24  Identities=38%  Similarity=0.553  Sum_probs=21.4

Q ss_pred             EEEeccCCCcHHHHHHHHHHHhcc
Q 036633          241 FLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +++.||||+|||++|+.|++.+..
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~   24 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGA   24 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCC
Confidence            468999999999999999998744

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=96.76  E-value=0.0072  Score=67.09  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=23.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+.....
T Consensus       349 ~~~~ivG~sGsGKSTL~~ll~g~~~~  374 (529)
T TIGR02857       349 ERVALVGPSGAGKSTLLNLLLGFVDP  374 (529)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57899999999999999999987654

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK13764 ATPase; Provisional

Probab=96.75  E-value=0.0066  Score=67.71  Aligned_cols=78  Identities=19%  Similarity=0.284  Sum_probs=47.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchhhhhh---HH---hHH-HHHHHhCCCCeEEeccc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELESIKH---FF---DSL-AALVKKRPYSVVLFDKI  310 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~~~s~---li---G~l-t~al~~~p~~VlllDEI  310 (550)
                      ..+|++||||+|||+++++++..+..   ....+..+ |-.++.-.+.+..   +-   ..+ ...++.+| .++++||+
T Consensus       258 ~~ILIsG~TGSGKTTll~AL~~~i~~---~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lLR~rP-D~IivGEi  333 (602)
T PRK13764        258 EGILIAGAPGAGKSTFAQALAEFYAD---MGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILLLVRP-DYTIYDEM  333 (602)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhh---CCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHHhhCC-CEEEECCC
Confidence            57999999999999999999999865   33333233 1122221111111   00   122 22367778 79999999


Q ss_pred             cccCHHHHHHHH
Q 036633          311 EKANSSILNLLL  322 (550)
Q Consensus       311 eka~~~v~~~Ll  322 (550)
                      -.  .+.+..+.
T Consensus       334 Rd--~Et~~~~~  343 (602)
T PRK13764        334 RK--TEDFKIFA  343 (602)
T ss_pred             CC--HHHHHHHH
Confidence            84  44455543

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=96.74  E-value=0.0081  Score=59.33  Aligned_cols=25  Identities=24%  Similarity=0.391  Sum_probs=22.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|+++|+..+.
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        28 EFVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            6889999999999999999997653

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=96.74  E-value=0.005  Score=63.76  Aligned_cols=85  Identities=20%  Similarity=0.341  Sum_probs=52.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCch--hhhhh-------HHhHHHHHHHhCCCCeEEec
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTEL--ESIKH-------FFDSLAALVKKRPYSVVLFD  308 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~--~~~s~-------liG~lt~al~~~p~~VlllD  308 (550)
                      ++++++||||+|||+++++|...+.... .+..++.+. -.|+.-.  +.++.       +-..+..++|.+| ..|++-
T Consensus       145 ~nilI~G~tGSGKTTll~aL~~~i~~~~-~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~P-D~IivG  222 (323)
T PRK13833        145 LNIVISGGTGSGKTTLANAVIAEIVASA-PEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRP-DRIIVG  222 (323)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHhcCC-CCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCC-CEEEEe
Confidence            5899999999999999999998874100 122333332 2222211  11110       0114456777788 799999


Q ss_pred             cccccCHHHHHHHHHhhhhc
Q 036633          309 KIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       309 EIeka~~~v~~~Ll~~ld~g  328 (550)
                      |+-.  ++... +++.+..|
T Consensus       223 EiRg--~ea~~-~l~a~~tG  239 (323)
T PRK13833        223 EVRD--GAALT-LLKAWNTG  239 (323)
T ss_pred             ecCC--HHHHH-HHHHHcCC
Confidence            9974  35554 68888877

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=96.74  E-value=0.008  Score=69.24  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=23.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus       506 e~vaIvG~sGsGKSTLlklL~gl~~p  531 (710)
T TIGR03796       506 QRVALVGGSGSGKSTIAKLVAGLYQP  531 (710)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57899999999999999999987754

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR00152 dephospho-CoA kinase

Probab=96.73  E-value=0.0033  Score=59.90  Aligned_cols=78  Identities=21%  Similarity=0.246  Sum_probs=47.0

Q ss_pred             EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh---------hhhhHHh-------------HHHHHHH
Q 036633          241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE---------SIKHFFD-------------SLAALVK  298 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~---------~~s~liG-------------~lt~al~  298 (550)
                      +.++|++|+|||++++.+++..        .+..+|+..+....         .+...+|             .|...+-
T Consensus         2 i~itG~~gsGKst~~~~l~~~~--------~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf   73 (188)
T TIGR00152         2 IGLTGGIGSGKSTVANYLADKY--------HFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVF   73 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHhc--------CCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHh
Confidence            6799999999999999999864        24456665553111         1222333             3333444


Q ss_pred             hCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          299 KRPYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       299 ~~p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      ..|.....+.+  -.||-+...+.+.+..-
T Consensus        74 ~~~~~~~~le~--ilhP~i~~~i~~~i~~~  101 (188)
T TIGR00152        74 NDPEELKWLNN--LLHPLIREWMKKLLAQF  101 (188)
T ss_pred             CCHHHHHHHHH--hhCHHHHHHHHHHHHHh
Confidence            44433333332  36888888887777543

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=96.73  E-value=0.0086  Score=68.83  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=23.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+.....
T Consensus       484 ~~vaivG~sGsGKSTL~~ll~g~~~p  509 (694)
T TIGR01846       484 EFIGIVGPSGSGKSTLTKLLQRLYTP  509 (694)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57899999999999999999988654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.71  E-value=0.0088  Score=57.30  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=23.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.+.||+|+|||+|+++|+..+..
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~~   52 (195)
T PRK13541         27 AITYIKGANGCGKSSLLRMIAGIMQP   52 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            68899999999999999999987643

>PRK07667 uridine kinase; Provisional

Probab=96.71  E-value=0.0039  Score=59.84  Aligned_cols=40  Identities=15%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      ..+.+.|+||+|||++|+.|++.+..   ...+...+++..|.
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~~l~~---~~~~~~~i~~Dd~~   57 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKENMKQ---EGIPFHIFHIDDYI   57 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEEcCccc
Confidence            68899999999999999999999865   34466667766664

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.71  E-value=0.0092  Score=58.42  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.+.||||+|||+|-..|+-....
T Consensus        32 e~vaI~GpSGSGKSTLLniig~ld~p   57 (226)
T COG1136          32 EFVAIVGPSGSGKSTLLNLLGGLDKP   57 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCC
Confidence            47789999999999999999976544

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=96.71  E-value=0.0088  Score=67.07  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=23.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++++||+|+|||++++.|+..+..
T Consensus       367 e~i~IvG~sGsGKSTLlklL~gl~~p  392 (576)
T TIGR02204       367 ETVALVGPSGAGKSTLFQLLLRFYDP  392 (576)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCC
Confidence            57899999999999999999988754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK14531 adenylate kinase; Provisional

Probab=96.70  E-value=0.0015  Score=61.99  Aligned_cols=33  Identities=30%  Similarity=0.480  Sum_probs=27.2

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .++++||||+|||++++.||+.+.        +..++++++
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g--------~~~is~gd~   36 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHG--------LRHLSTGDL   36 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC--------CCeEecccH
Confidence            689999999999999999999873        455666554

>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]

Probab=96.70  E-value=0.013  Score=64.55  Aligned_cols=51  Identities=37%  Similarity=0.526  Sum_probs=35.2

Q ss_pred             CCCCeEEeccccc--cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633          300 RPYSVVLFDKIEK--ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM  362 (550)
Q Consensus       300 ~p~~VlllDEIek--a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~  362 (550)
                      ..|+||+|||+|.  +|.+++=.||+-+-..  +        .|+  -+|||++.++++.....+
T Consensus       162 skYsvIIlDEAHERsl~TDiLlGlLKki~~~--R--------~~L--klIimSATlda~kfS~yF  214 (674)
T KOG0922|consen  162 SKYSVIILDEAHERSLHTDILLGLLKKILKK--R--------PDL--KLIIMSATLDAEKFSEYF  214 (674)
T ss_pred             ccccEEEEechhhhhhHHHHHHHHHHHHHhc--C--------CCc--eEEEEeeeecHHHHHHHh
Confidence            5689999999986  4567766666555444  3        123  367888888888877655

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=96.69  E-value=0.022  Score=58.28  Aligned_cols=164  Identities=19%  Similarity=0.234  Sum_probs=87.8

Q ss_pred             ccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHH-HHHHHhccCCCCCCce--eEEecCCCCchh
Q 036633          208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAK-AIANELYDNNDNDNHL--IHFDMGNYTELE  284 (550)
Q Consensus       208 viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk-~la~~l~~~~~~~~~l--i~id~s~~~~~~  284 (550)
                      ++|..+--+.+...+++..  -.|     ...+++++||-|+|||.+.. .|+. ...   ..+++  +++|..-..+..
T Consensus        26 l~g~~~~~~~l~~~lkqt~--~~g-----EsnsviiigprgsgkT~li~~~Ls~-~q~---~~E~~l~v~Lng~~~~dk~   94 (408)
T KOG2228|consen   26 LFGVQDEQKHLSELLKQTI--LHG-----ESNSVIIIGPRGSGKTILIDTRLSD-IQE---NGENFLLVRLNGELQTDKI   94 (408)
T ss_pred             eeehHHHHHHHHHHHHHHH--Hhc-----CCCceEEEccCCCCceEeeHHHHhh-HHh---cCCeEEEEEECccchhhHH
Confidence            3444444455555555441  001     11699999999999999654 3444 111   22244  445533222222


Q ss_pred             hhhhH--------------Hh-------HHHHHHHh---CCCC-eE-Eeccccc-cCHHHHHHHHHhhhhccccccccCC
Q 036633          285 SIKHF--------------FD-------SLAALVKK---RPYS-VV-LFDKIEK-ANSSILNLLLKILKTDFNRKATRGI  337 (550)
Q Consensus       285 ~~s~l--------------iG-------~lt~al~~---~p~~-Vl-llDEIek-a~~~v~~~Ll~~ld~g~~~~l~d~g  337 (550)
                      ++..+              +|       .+.+++..   .+.+ || ++||||- +++.-|..|+.++|-.+-.      
T Consensus        95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~------  168 (408)
T KOG2228|consen   95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA------  168 (408)
T ss_pred             HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc------
Confidence            21111              11       22333332   2333 44 5789986 5677888999999865111      


Q ss_pred             eEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          338 AAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       338 ~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                         -..-|||-+||..+.-.           .+.+.++        +|+..-+.|- +|+++-++...+.+..+
T Consensus       169 ---r~Piciig~Ttrld~lE-----------~LEKRVK--------SRFshr~I~m-~~~~~l~~yv~l~r~ll  219 (408)
T KOG2228|consen  169 ---RAPICIIGVTTRLDILE-----------LLEKRVK--------SRFSHRVIFM-LPSLPLGDYVDLYRKLL  219 (408)
T ss_pred             ---CCCeEEEEeeccccHHH-----------HHHHHHH--------hhcccceeec-cCCCChHHHHHHHHHHh
Confidence               11347788888775422           2223333        5555443343 34777888998888777

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=96.68  E-value=0.0073  Score=62.12  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=23.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|+||+|+|||++.++|+..+..
T Consensus        20 e~~~l~G~NGaGKSTLl~~l~Gl~~p   45 (302)
T TIGR01188        20 EVFGFLGPNGAGKTTTIRMLTTLLRP   45 (302)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            58899999999999999999987643

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=96.67  E-value=0.0078  Score=61.91  Aligned_cols=26  Identities=35%  Similarity=0.438  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.+.||+|+|||++.++|+..+..
T Consensus        29 ei~~l~G~NGaGKTTLl~~l~Gl~~~   54 (301)
T TIGR03522        29 RIVGFLGPNGAGKSTTMKIITGYLPP   54 (301)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            68999999999999999999987543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=96.67  E-value=0.0052  Score=59.58  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+..+.
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          27 EFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5889999999999999999998764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=96.67  E-value=0.015  Score=57.34  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=22.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|+++|+..+.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252          29 EVVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcC
Confidence            6899999999999999999997764

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK06217 hypothetical protein; Validated

Probab=96.65  E-value=0.0016  Score=61.79  Aligned_cols=25  Identities=28%  Similarity=0.323  Sum_probs=22.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .+++.|+||+|||++|+.|++.+.-
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~   27 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDI   27 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4899999999999999999998855

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.65  E-value=0.0035  Score=61.76  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=32.3

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE-EecCCCCc
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH-FDMGNYTE  282 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~-id~s~~~~  282 (550)
                      .+|..+.|.||+|+|||++++.|+..+..   ....... +.+..|..
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~---~~g~~~v~i~~D~~~~   75 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ---DGELPAIQVPMDGFHL   75 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhh---ccCCceEEEecccccC
Confidence            35588999999999999999999999865   3333322 55555543

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.65  E-value=0.011  Score=56.92  Aligned_cols=25  Identities=44%  Similarity=0.586  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||++.++|+....
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         28 GLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            6889999999999999999998764

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=96.65  E-value=0.013  Score=57.69  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=22.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||++.++|+..+.
T Consensus        28 e~~~l~G~nGsGKSTLl~~i~Gl~~   52 (236)
T cd03253          28 KKVAIVGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccC
Confidence            6889999999999999999998764

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.65  E-value=0.0041  Score=57.66  Aligned_cols=26  Identities=27%  Similarity=0.457  Sum_probs=23.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+++.||||+||+++-|++|.....
T Consensus        30 e~iaitGPSG~GKStllk~va~Lisp   55 (223)
T COG4619          30 EFIAITGPSGCGKSTLLKIVASLISP   55 (223)
T ss_pred             ceEEEeCCCCccHHHHHHHHHhccCC
Confidence            57899999999999999999987754

>PRK14530 adenylate kinase; Provisional

Probab=96.64  E-value=0.0017  Score=63.39  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=22.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .++|.||||+|||++|+.||+.+.
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            688899999999999999999873

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=96.63  E-value=0.009  Score=58.70  Aligned_cols=25  Identities=28%  Similarity=0.271  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|+++|+..+.
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        27 EVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            6899999999999999999998764

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=96.63  E-value=0.0081  Score=59.93  Aligned_cols=34  Identities=21%  Similarity=0.409  Sum_probs=26.3

Q ss_pred             EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      ++|+|+||+|||++|+.|++.+..   ...+++.++.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~---~~~~v~~i~~   35 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSE---KNIDVIILGT   35 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHH---cCCceEEEcc
Confidence            689999999999999999999854   2234555543

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.62  E-value=0.0017  Score=58.66  Aligned_cols=25  Identities=36%  Similarity=0.502  Sum_probs=22.4

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++++.||||+|||++|+.||+.+.-
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~   25 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGL   25 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3689999999999999999998854

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.62  E-value=0.0099  Score=58.86  Aligned_cols=26  Identities=38%  Similarity=0.480  Sum_probs=23.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+++.||+|+|||++++.++-.+..
T Consensus        31 e~~~i~G~nGsGKSTL~~~l~GLl~p   56 (235)
T COG1122          31 ERVLLIGPNGSGKSTLLKLLNGLLKP   56 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCcCcC
Confidence            48899999999999999999988865

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.62  E-value=0.0018  Score=51.28  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=20.7

Q ss_pred             EEEeccCCCcHHHHHHHHHHHh
Q 036633          241 FLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      +.+.|+||+|||++++.|++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999987

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.62  E-value=0.0014  Score=62.06  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=22.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+++.||||+|||++|+.|++.+
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            378899999999999999999886

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13948 shikimate kinase; Provisional

Probab=96.61  E-value=0.0023  Score=60.83  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=29.6

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      .|.+++|.|++|+|||++++.||+.+..      +|+..|
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~------~~iD~D   42 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALML------HFIDTD   42 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCC------CEEECC
Confidence            3489999999999999999999999876      777555

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.61  E-value=0.0032  Score=60.96  Aligned_cols=40  Identities=28%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +|..+.+.||||+|||++++.|++.+.+     ..+..+++..|.
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~-----~~~~~i~~D~~~   44 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEELGD-----ESIAVIPQDSYY   44 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCC-----CceEEEeCCccc
Confidence            5579999999999999999999998843     145556665553

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.61  E-value=0.0052  Score=55.26  Aligned_cols=42  Identities=29%  Similarity=0.403  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          213 DAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       213 ~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +...++...+...      +    +| .+++|.|+.|+|||++++.+++.+..
T Consensus         6 ~~t~~l~~~l~~~------l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150         6 KAMDKFGKAFAKP------L----DFGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             HHHHHHHHHHHHh------C----CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            3445556666544      1    33 68999999999999999999999864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=96.60  E-value=0.011  Score=67.76  Aligned_cols=26  Identities=23%  Similarity=0.313  Sum_probs=23.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus       480 e~vaIvG~sGsGKSTLlklL~gl~~p  505 (686)
T TIGR03797       480 EFVAIVGPSGSGKSTLLRLLLGFETP  505 (686)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            57899999999999999999988754

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=96.60  E-value=0.011  Score=57.58  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=22.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+..+.
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          32 EVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcC
Confidence            6889999999999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.60  E-value=0.011  Score=55.86  Aligned_cols=26  Identities=27%  Similarity=0.213  Sum_probs=23.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.+.||+|+|||+|.++|+..+..
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~~   52 (182)
T cd03215          27 EIVGIAGLVGNGQTELAEALFGLRPP   52 (182)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            68899999999999999999987653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=96.60  E-value=0.021  Score=55.89  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+++++|+..+.
T Consensus        41 e~~~i~G~nGsGKSTLl~~l~Gl~~   65 (226)
T cd03248          41 EVTALVGPSGSGKSTVVALLENFYQ   65 (226)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcC
Confidence            6889999999999999999998764

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=96.59  E-value=0.0068  Score=58.81  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|+++|+..+.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          27 EFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5789999999999999999998764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13949 shikimate kinase; Provisional

Probab=96.59  E-value=0.0019  Score=60.72  Aligned_cols=31  Identities=35%  Similarity=0.449  Sum_probs=26.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      .++++||||+|||++++.||+.+.-      +++..|
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~------~~id~D   33 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGL------SFIDLD   33 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC------Ceeccc
Confidence            5889999999999999999999855      555555

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]

Probab=96.59  E-value=0.0089  Score=68.92  Aligned_cols=60  Identities=35%  Similarity=0.407  Sum_probs=35.1

Q ss_pred             HHHHHHHh----CCCCeEEeccccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633          292 SLAALVKK----RPYSVVLFDKIEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM  362 (550)
Q Consensus       292 ~lt~al~~----~p~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~  362 (550)
                      .|+..+..    ..|++|+|||+|.=+-  ++.=.|+.-+-..  +  .     -|++  +|||+.+++.+......
T Consensus       149 iLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~--r--r-----~DLK--iIimSATld~~rfs~~f  214 (845)
T COG1643         149 ILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLAR--R--R-----DDLK--LIIMSATLDAERFSAYF  214 (845)
T ss_pred             HHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhh--c--C-----CCce--EEEEecccCHHHHHHHc
Confidence            55555553    5589999999986543  3333333222222  1  1     1233  68888899888776543

>PTZ00088 adenylate kinase 1; Provisional

Probab=96.59  E-value=0.0023  Score=63.22  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=29.6

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      .|..+++.||||+|||++|+.||+.+        .+..++++++-
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~--------g~~~is~gdll   41 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKE--------NLKHINMGNIL   41 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh--------CCcEEECChHH
Confidence            45568999999999999999999987        35666666653

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.59  E-value=0.0026  Score=59.80  Aligned_cols=38  Identities=24%  Similarity=0.325  Sum_probs=30.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      .++.|.|+||+|||++|+.|+..+..   ....+..+|...
T Consensus         5 ~~i~~~G~~GsGKST~a~~la~~l~~---~g~~v~~id~D~   42 (175)
T PRK00889          5 VTVWFTGLSGAGKTTIARALAEKLRE---AGYPVEVLDGDA   42 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEcCcc
Confidence            68899999999999999999999865   333566666543

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=96.59  E-value=0.012  Score=56.76  Aligned_cols=26  Identities=38%  Similarity=0.532  Sum_probs=23.0

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .| ..+.+.||+|+|||++.++|+...
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (200)
T cd03217          24 KKGEVHALMGPNGSGKSTLAKTIMGHP   50 (200)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44 688999999999999999999873

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=96.58  E-value=0.02  Score=54.65  Aligned_cols=26  Identities=27%  Similarity=0.299  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +.++++|++|.|||+.|-.+|-..-+
T Consensus        23 g~v~v~~g~GkGKtt~a~g~a~ra~g   48 (191)
T PRK05986         23 GLLIVHTGNGKGKSTAAFGMALRAVG   48 (191)
T ss_pred             CeEEEECCCCCChHHHHHHHHHHHHH
Confidence            79999999999999999888876655

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=96.58  E-value=0.011  Score=66.21  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus       342 ~~~~ivG~sGsGKSTLl~ll~g~~~p  367 (569)
T PRK10789        342 QMLGICGPTGSGKSTLLSLIQRHFDV  367 (569)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccCC
Confidence            57889999999999999999987643

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.58  E-value=0.011  Score=56.56  Aligned_cols=84  Identities=20%  Similarity=0.247  Sum_probs=52.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh--ccCCCCCCceeEE-------------------ecCCCCchhhhh----------
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL--YDNNDNDNHLIHF-------------------DMGNYTELESIK----------  287 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l--~~~~~~~~~li~i-------------------d~s~~~~~~~~s----------  287 (550)
                      ..+.+.||+|+|||+|.++|+..+  ..   .... +.+                   +..-+.. .++.          
T Consensus        36 e~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~-i~~~g~~~~~~~~~~~i~~~~q~~~~~~~-~t~~~~i~~~~~~~  110 (194)
T cd03213          36 ELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGE-VLINGRPLDKRSFRKIIGYVPQDDILHPT-LTVRETLMFAAKLR  110 (194)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCC---CceE-EEECCEeCchHhhhheEEEccCcccCCCC-CcHHHHHHHHHHhc
Confidence            688999999999999999999877  32   1111 111                   1011110 0110          


Q ss_pred             hHH-h-----HHHHHHHhCCCCeEEecccc-ccCHHHHHHHHHhhhhc
Q 036633          288 HFF-D-----SLAALVKKRPYSVVLFDKIE-KANSSILNLLLKILKTD  328 (550)
Q Consensus       288 ~li-G-----~lt~al~~~p~~VlllDEIe-ka~~~v~~~Ll~~ld~g  328 (550)
                      .|- |     .+..++-..| .++++||.- -+++.....+++++..-
T Consensus       111 ~LS~G~~qrv~laral~~~p-~illlDEP~~~LD~~~~~~l~~~l~~~  157 (194)
T cd03213         111 GLSGGERKRVSIALELVSNP-SLLFLDEPTSGLDSSSALQVMSLLRRL  157 (194)
T ss_pred             cCCHHHHHHHHHHHHHHcCC-CEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            111 2     5566666677 799999975 46777777888777643

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species

Probab=96.57  E-value=0.0028  Score=66.05  Aligned_cols=140  Identities=16%  Similarity=0.217  Sum_probs=73.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL  318 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~  318 (550)
                      ..++|+|||+||||..+-.|-+.+.|      .++.+     ....+- -.+.-|+++      .|-+||++-...-+-.
T Consensus       263 nClvi~GPPdTGKS~F~~SLi~Fl~G------kViSf-----~Ns~Sh-FWLqPL~d~------Ki~llDDAT~~cW~Y~  324 (432)
T PF00519_consen  263 NCLVIYGPPDTGKSMFCMSLIKFLKG------KVISF-----VNSKSH-FWLQPLADA------KIALLDDATYPCWDYI  324 (432)
T ss_dssp             SEEEEESSCCCSHHHHHHHHHHHHTS------EEE-G-----GGTTSC-GGGGGGCT-------SSEEEEEE-HHHHHHH
T ss_pred             cEEEEECCCCCchhHHHHHHHHHhCC------EEEEe-----cCCCCc-ccccchhcC------cEEEEcCCcccHHHHH
Confidence            79999999999999999999999988      55553     111110 011122222      5899999875555555


Q ss_pred             HHHH-HhhhhccccccccC---CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecC
Q 036633          319 NLLL-KILKTDFNRKATRG---IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDL  394 (550)
Q Consensus       319 ~~Ll-~~ld~g~~~~l~d~---g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~  394 (550)
                      +.-+ ..||..  . +.-.   ...+-.+---++.|||.+....                 ..+ .-|.+|+ .++.|.-
T Consensus       325 D~ylRNaLDGN--~-vsiD~KHkap~Qik~PPLlITsN~dv~~~-----------------~~~-~YLhSRi-~~f~F~n  382 (432)
T PF00519_consen  325 DTYLRNALDGN--P-VSIDCKHKAPVQIKCPPLLITSNIDVKKD-----------------DRW-KYLHSRI-TCFEFPN  382 (432)
T ss_dssp             HHHTHHHHCTS--E-EEEEESSSEEEEEE---EEEEESS-TTTS-----------------CCC-HHHCTTE-EEEE--S
T ss_pred             HHHHHhccCCC--e-eeeeccCCCceEeecCceEEecCCCCCcc-----------------hhh-hhhhheE-EEEEcCC
Confidence            5433 344433  2 2211   2333344455788999864221                 122 2267999 7999987


Q ss_pred             CCCCCHH--HHHHHHHHHHHHHHHHh
Q 036633          395 AVPLLDT--TRLLLREWACEETKRRN  418 (550)
Q Consensus       395 ~~pL~~e--~i~~I~~~~l~~~~~~l  418 (550)
                      +-|++++  -...|-..--+.+-+++
T Consensus       383 ~~P~d~~G~P~y~ltd~~WksFF~rl  408 (432)
T PF00519_consen  383 PFPLDENGNPVYELTDANWKSFFRRL  408 (432)
T ss_dssp             -S-BSTTSSBSS---HHHHHHHHHHH
T ss_pred             ccccCCCCCeeEEeccChHHHHHHHH
Confidence            7777752  23333333333344443

The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=96.57  E-value=0.0031  Score=60.69  Aligned_cols=40  Identities=23%  Similarity=0.235  Sum_probs=31.8

Q ss_pred             cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          235 RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      +.+|..+.|+|+||+|||++|+.|+..++.   .....+.+|.
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~---~~~~~~~ld~   60 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE---LGVSTYLLDG   60 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHh---CCCCEEEEcC
Confidence            346689999999999999999999999876   3334566654

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.57  E-value=0.017  Score=58.41  Aligned_cols=25  Identities=28%  Similarity=0.230  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+..+.
T Consensus        36 e~~~I~G~nGsGKSTLl~~i~Gl~~   60 (269)
T PRK13648         36 QWTSIVGHNGSGKSTIAKLMIGIEK   60 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            6889999999999999999998764

>PRK01184 hypothetical protein; Provisional

Probab=96.56  E-value=0.065  Score=50.63  Aligned_cols=22  Identities=41%  Similarity=0.552  Sum_probs=18.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .++++||||+|||++|+ +++.+
T Consensus         3 ~i~l~G~~GsGKsT~a~-~~~~~   24 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSK-IAREM   24 (184)
T ss_pred             EEEEECCCCCCHHHHHH-HHHHc
Confidence            67899999999999998 55554

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.56  E-value=0.022  Score=55.05  Aligned_cols=25  Identities=24%  Similarity=0.170  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+..+.
T Consensus        35 ~~~~i~G~nGsGKSTLl~~l~Gl~~   59 (207)
T cd03369          35 EKIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccC
Confidence            5889999999999999999998754

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=96.56  E-value=0.012  Score=56.73  Aligned_cols=25  Identities=32%  Similarity=0.500  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+..+.
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          27 EIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcC
Confidence            6889999999999999999997654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=96.55  E-value=0.012  Score=67.69  Aligned_cols=26  Identities=27%  Similarity=0.255  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus       501 ~~vaIvG~SGsGKSTLlklL~gl~~p  526 (708)
T TIGR01193       501 SKTTIVGMSGSGKSTLAKLLVGFFQA  526 (708)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCC
Confidence            57899999999999999999987644

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=96.54  E-value=0.0037  Score=61.27  Aligned_cols=87  Identities=16%  Similarity=0.135  Sum_probs=46.0

Q ss_pred             EEEeccCCCcHHHHHHHHHHHhccCCCCCCc-eeEEecCCCCchhhhhhHHhHHHHHHH-hCCCCeEEeccccccCHHHH
Q 036633          241 FLFAGPNCSGKAELAKAIANELYDNNDNDNH-LIHFDMGNYTELESIKHFFDSLAALVK-KRPYSVVLFDKIEKANSSIL  318 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~-li~id~s~~~~~~~~s~liG~lt~al~-~~p~~VlllDEIeka~~~v~  318 (550)
                      +++.|+||+|||++.+.+.... ..-....+ ..-+..............+..+..+.. .+++.+++|||+..+|+..+
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~~g~l   79 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR-LVVTVISPTIELYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLPPGYL   79 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc-cccccccccceeccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCChHHH
Confidence            3689999999999999988872 00000001 111111100000000011111122211 13578999999999999888


Q ss_pred             HHHHHhhhhc
Q 036633          319 NLLLKILKTD  328 (550)
Q Consensus       319 ~~Ll~~ld~g  328 (550)
                      ..++......
T Consensus        80 ~~l~~~~~~~   89 (234)
T PF01443_consen   80 LLLLSLSPAK   89 (234)
T ss_pred             HHHHhhccCc
Confidence            8866555433

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.54  E-value=0.53  Score=55.41  Aligned_cols=44  Identities=23%  Similarity=0.403  Sum_probs=38.3

Q ss_pred             cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +|++..++++.+.+..-           .++++-++|--|+|||++|+.+-+...
T Consensus       161 VG~e~~~~kl~~~L~~d-----------~~~iv~i~GMGGvGKTTL~~qi~N~~~  204 (889)
T KOG4658|consen  161 VGLETMLEKLWNRLMED-----------DVGIVGIYGMGGVGKTTLARQIFNKFD  204 (889)
T ss_pred             ccHHHHHHHHHHHhccC-----------CCCEEEEECCCcccHHHHHHHHhcccc
Confidence            99999999998888765           227999999999999999999987764

>TIGR02012 tigrfam_recA protein RecA

Probab=96.54  E-value=0.01  Score=61.37  Aligned_cols=72  Identities=17%  Similarity=0.202  Sum_probs=46.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-------------------HHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-------------------SLAALVKK  299 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-------------------~lt~al~~  299 (550)
                      .+.+++||||+|||+||-.++...-.   ...+.+.||+.+-.+... ..-+|                   .+...++.
T Consensus        56 ~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~~~-a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~  131 (321)
T TIGR02012        56 RIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPVY-ARKLGVDIDNLLVSQPDTGEQALEIAETLVRS  131 (321)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHHHH-HHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence            58899999999999999887666544   445777787765433322 11122                   22223444


Q ss_pred             CCCCeEEeccccccC
Q 036633          300 RPYSVVLFDKIEKAN  314 (550)
Q Consensus       300 ~p~~VlllDEIeka~  314 (550)
                      ....+|++|-+..+.
T Consensus       132 ~~~~lIVIDSv~al~  146 (321)
T TIGR02012       132 GAVDIIVVDSVAALV  146 (321)
T ss_pred             cCCcEEEEcchhhhc
Confidence            455799999887543

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.54  E-value=0.0087  Score=57.74  Aligned_cols=25  Identities=36%  Similarity=0.383  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|++.|+..+.
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          34 EMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             cEEEEECCCCCCHHHHHHHhcccCC
Confidence            6889999999999999999998865

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=96.54  E-value=0.0073  Score=56.80  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=27.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      .+++.||||+|||++|..++..+..      +++.+.-+.
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~------~~~~iat~~   36 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGL------QVLYIATAQ   36 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCC------CcEeCcCCC
Confidence            5799999999999999999987644      566655443

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=96.54  E-value=0.012  Score=66.11  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus       362 ~~~~ivG~sGsGKSTL~~ll~g~~~~  387 (585)
T TIGR01192       362 QTVAIVGPTGAGKTTLINLLQRVYDP  387 (585)
T ss_pred             CEEEEECCCCCCHHHHHHHHccCCCC
Confidence            67899999999999999999987654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=96.53  E-value=0.0072  Score=60.42  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=23.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ...+|.||+|+|||++++.+++.+..
T Consensus        17 qr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          17 QRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccc
Confidence            68899999999999999999988754

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.53  E-value=0.0021  Score=61.08  Aligned_cols=32  Identities=34%  Similarity=0.561  Sum_probs=26.2

Q ss_pred             EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ++++||||+|||++|+.||+.+        .+..++++++
T Consensus         2 I~i~G~pGsGKst~a~~La~~~--------~~~~i~~~~l   33 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY--------GLPHISTGDL   33 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc--------CCeEEECcHH
Confidence            6899999999999999999986        3556666554

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.53  E-value=0.038  Score=55.84  Aligned_cols=84  Identities=13%  Similarity=0.241  Sum_probs=54.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh----------------HHHHHH---Hh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD----------------SLAALV---KK  299 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG----------------~lt~al---~~  299 (550)
                      ..++|+||+|+|||++++.|+..+..   .......+++..+. ..++..+..                .+.+++   .+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~r-i~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~  151 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSR-IGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE  151 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCC-HHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence            69999999999999999999988754   33345555554443 112222211                333333   22


Q ss_pred             -CCCCeEEeccccccC--HHHHHHHHHhhh
Q 036633          300 -RPYSVVLFDKIEKAN--SSILNLLLKILK  326 (550)
Q Consensus       300 -~p~~VlllDEIeka~--~~v~~~Ll~~ld  326 (550)
                       ..+.+|++|-....+  ...+..|.+++.
T Consensus       152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~  181 (270)
T PRK06731        152 EARVDYILIDTAGKNYRASETVEEMIETMG  181 (270)
T ss_pred             cCCCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence             467899999999886  455666666664

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=96.50  E-value=0.01  Score=57.43  Aligned_cols=25  Identities=44%  Similarity=0.519  Sum_probs=19.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .+.+.||+|||||.+|-+.|-.+..
T Consensus        21 ~v~~~G~AGTGKT~LA~a~Al~~v~   45 (205)
T PF02562_consen   21 LVIVNGPAGTGKTFLALAAALELVK   45 (205)
T ss_dssp             EEEEE--TTSSTTHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHH
Confidence            7889999999999999998876644

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.50  E-value=0.014  Score=56.39  Aligned_cols=26  Identities=31%  Similarity=0.440  Sum_probs=23.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.+.||+|+|||+|.++|+..+..
T Consensus        28 e~~~l~G~nGsGKSTLl~~l~G~~~p   53 (204)
T PRK13538         28 ELVQIEGPNGAGKTSLLRILAGLARP   53 (204)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            58899999999999999999987653

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=96.49  E-value=0.016  Score=55.13  Aligned_cols=76  Identities=17%  Similarity=0.298  Sum_probs=42.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc--CC-----------CCCCceeEEecCCCCchhhhhhHHh---HHHHHHHh-CCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD--NN-----------DNDNHLIHFDMGNYTELESIKHFFD---SLAALVKK-RPY  302 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~--~~-----------~~~~~li~id~s~~~~~~~~s~liG---~lt~al~~-~p~  302 (550)
                      .++++||.|.|||++.+.++-..+-  .|           .-+.-+.+++..+.... ..+.+-+   ++..++.. ...
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~-~~s~fs~~~~~l~~~l~~~~~~   79 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQ-GLSTFMVEMKETANILKNATEN   79 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhc-cccHHHHHHHHHHHHHHhCCCC
Confidence            3689999999999999999843321  11           00111222333222211 1222322   55556655 233


Q ss_pred             CeEEecccccc-CHH
Q 036633          303 SVVLFDKIEKA-NSS  316 (550)
Q Consensus       303 ~VlllDEIeka-~~~  316 (550)
                      +++++||+.+. ++.
T Consensus        80 ~llllDEp~~g~d~~   94 (185)
T smart00534       80 SLVLLDELGRGTSTY   94 (185)
T ss_pred             eEEEEecCCCCCCHH
Confidence            79999999764 443

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.49  E-value=0.0042  Score=60.93  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .++|+.||||+|||.+|..++...
T Consensus        20 s~~li~G~~GsGKT~l~~q~l~~~   43 (226)
T PF06745_consen   20 SVVLISGPPGSGKTTLALQFLYNG   43 (226)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHh
Confidence            799999999999999998766433

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=96.49  E-value=0.0097  Score=58.62  Aligned_cols=25  Identities=32%  Similarity=0.376  Sum_probs=22.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|+++|+..+.
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771         26 ERVAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            6889999999999999999998764

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=96.48  E-value=0.0052  Score=64.74  Aligned_cols=26  Identities=31%  Similarity=0.335  Sum_probs=22.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .-.+++||+|||||+||+.|++.+..
T Consensus       170 QR~lIvgppGvGKTTLaK~Ian~I~~  195 (416)
T PRK09376        170 QRGLIVAPPKAGKTVLLQNIANSITT  195 (416)
T ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHh
Confidence            45688899999999999999998754

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.47  E-value=0.01  Score=51.59  Aligned_cols=87  Identities=17%  Similarity=0.186  Sum_probs=51.4

Q ss_pred             EEEeccCCCcHHHHHHHHHHHhc-cC----C-----------CCCCceeEEecCCCCchhhhhh---HHhHHHHHHHhCC
Q 036633          241 FLFAGPNCSGKAELAKAIANELY-DN----N-----------DNDNHLIHFDMGNYTELESIKH---FFDSLAALVKKRP  301 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~-~~----~-----------~~~~~li~id~s~~~~~~~~s~---liG~lt~al~~~p  301 (550)
                      ++|.|+||+|||++.++|...-. ..    +           .....+.-+|...+.+......   .+..+.+.+....
T Consensus         2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d   81 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSD   81 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTES
T ss_pred             EEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCC
Confidence            68999999999999999996311 10    0           1223456678888765433322   2223444443444


Q ss_pred             CCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          302 YSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       302 ~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .-++++| .+....+....+++.++.+
T Consensus        82 ~ii~vv~-~~~~~~~~~~~~~~~l~~~  107 (116)
T PF01926_consen   82 LIIYVVD-ASNPITEDDKNILRELKNK  107 (116)
T ss_dssp             EEEEEEE-TTSHSHHHHHHHHHHHHTT
T ss_pred             EEEEEEE-CCCCCCHHHHHHHHHHhcC
Confidence            3456678 7774445555666666543

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=96.47  E-value=0.004  Score=58.11  Aligned_cols=41  Identities=27%  Similarity=0.459  Sum_probs=34.2

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +|.++.|+|.||+|||++|.++.+.|+.   .......+|....
T Consensus        22 ~~~viW~TGLSGsGKSTiA~ale~~L~~---~G~~~y~LDGDnv   62 (197)
T COG0529          22 KGAVIWFTGLSGSGKSTIANALEEKLFA---KGYHVYLLDGDNV   62 (197)
T ss_pred             CCeEEEeecCCCCCHHHHHHHHHHHHHH---cCCeEEEecChhH
Confidence            5589999999999999999999999998   5556666765443

>PRK08485 DNA polymerase III subunit delta'; Validated

Probab=96.46  E-value=0.02  Score=54.73  Aligned_cols=87  Identities=18%  Similarity=0.136  Sum_probs=64.4

Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhh
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSL  382 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~l  382 (550)
                      +.++++++++++...+|.||+.+|+.  .           .+++||+.|+..                     ..+.|-+
T Consensus        56 ~k~iI~~a~~l~~~A~NaLLK~LEEP--p-----------~~~~fiL~t~~~---------------------~~llpTI  101 (206)
T PRK08485         56 EKIIVIAAPSYGIEAQNALLKILEEP--P-----------KNICFIIVAKSK---------------------NLLLPTI  101 (206)
T ss_pred             cEEEEEchHhhCHHHHHHHHHHhcCC--C-----------CCeEEEEEeCCh---------------------HhCchHH
Confidence            45678899999999999999999998  6           678888877653                     3567889


Q ss_pred             hhhccce-------------eEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHh
Q 036633          383 LKLLDKL-------------VVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIAS  438 (550)
Q Consensus       383 l~Rid~i-------------i~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~  438 (550)
                      ++|| .+             +.|.   +++.+++...+.. +.+       .++   ...+++.+.|+.
T Consensus       102 ~SRc-~~~~~~~~~~~~~l~l~l~---~l~~~~i~~~L~~-~~k-------e~~---~~~~ea~~lIa~  155 (206)
T PRK08485        102 RSRL-IIEKRKQKKPVKPLDLDLK---KLDLKDIYEFLKE-LEK-------ENK---LSKEELKELIES  155 (206)
T ss_pred             Hhhh-eeccccccccccccccccC---CCCHHHHHHHHHH-HHH-------ccc---ccHHHHHHHHHH
Confidence            9999 44             5677   9999998877766 321       222   445666666655

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=96.46  E-value=0.027  Score=54.22  Aligned_cols=26  Identities=38%  Similarity=0.503  Sum_probs=23.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.+.||+|+|||++.++|+.....
T Consensus        32 ~~~~i~G~nG~GKSTLl~~i~G~~~~   57 (204)
T cd03250          32 ELVAIVGPVGSGKSSLLSALLGELEK   57 (204)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcCCC
Confidence            68899999999999999999987644

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.45  E-value=0.012  Score=58.85  Aligned_cols=84  Identities=19%  Similarity=0.281  Sum_probs=53.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec---CCCCchh---hhhhH---Hh------------------
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM---GNYTELE---SIKHF---FD------------------  291 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~---s~~~~~~---~~s~l---iG------------------  291 (550)
                      -++-++|+||+|||++++.|......   +... +.++.   ..+....   .+..+   +|                  
T Consensus        40 e~~glVGESG~GKSTlgr~i~~L~~p---t~G~-i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr  115 (268)
T COG4608          40 ETLGLVGESGCGKSTLGRLILGLEEP---TSGE-ILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR  115 (268)
T ss_pred             CEEEEEecCCCCHHHHHHHHHcCcCC---CCce-EEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence            58899999999999999999988764   3322 33332   2221110   11111   12                  


Q ss_pred             ---HHHHHHHhCCCCeEEecccccc-CHHHHHHHHHhhhh
Q 036633          292 ---SLAALVKKRPYSVVLFDKIEKA-NSSILNLLLKILKT  327 (550)
Q Consensus       292 ---~lt~al~~~p~~VlllDEIeka-~~~v~~~Ll~~ld~  327 (550)
                         .++.++.-+| .+++.||.-.+ +-++|...+.+|.+
T Consensus       116 QRi~IARALal~P-~liV~DEpvSaLDvSiqaqIlnLL~d  154 (268)
T COG4608         116 QRIGIARALALNP-KLIVADEPVSALDVSVQAQILNLLKD  154 (268)
T ss_pred             hhHHHHHHHhhCC-cEEEecCchhhcchhHHHHHHHHHHH
Confidence               4556666677 79999998654 56677766666643

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=96.44  E-value=0.0023  Score=59.88  Aligned_cols=32  Identities=25%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      .++.|+|++|+|||++.+.||+.|+-      +|+-.|
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~------~F~D~D   34 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNL------PFIDTD   34 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCC------Ccccch
Confidence            47899999999999999999999976      665544

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.44  E-value=0.0032  Score=59.27  Aligned_cols=32  Identities=22%  Similarity=0.418  Sum_probs=26.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      ..++|+||+|+|||++++.||+.+..      +++..|
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~l~~------~~vd~D   36 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQLNM------EFYDSD   36 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHcCC------cEEECC
Confidence            47999999999999999999998755      555554

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases

Probab=96.44  E-value=0.031  Score=51.49  Aligned_cols=22  Identities=27%  Similarity=0.132  Sum_probs=18.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      ..+++.||+|+|||+.+...+-
T Consensus        15 ~~~li~aptGsGKT~~~~~~~l   36 (169)
T PF00270_consen   15 KNVLISAPTGSGKTLAYILPAL   36 (169)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCccHHHHHHHHH
Confidence            3799999999999998875443

Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.44  E-value=0.0028  Score=61.47  Aligned_cols=30  Identities=17%  Similarity=0.320  Sum_probs=25.6

Q ss_pred             CCCcCCCeeEEEeccCCCcHHHHHHHHHHH
Q 036633          232 LSSRRQLGLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       232 l~~~~~p~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      +.+|.+|..++|+||||+|||++++.|.+.
T Consensus         7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          7 FNKPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             cCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            456667788889999999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	550
1qvr_A	854	Crystal Structure Analysis Of Clpb Length = 854		9e-21
3pxi_A	758	Structure Of Meca108:clpc Length = 758		4e-16
4fct_A	308	Crystal Structure Of The C-Terminal Domain Of Clpb		6e-16
4fcv_A	311	Crystal Structure Of The C-Terminal Domain Of Clpb		2e-14
1ksf_X	758	Crystal Structure Of Clpa, An Hsp100 Chaperone And		4e-13

>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb Length = 854

Iteration: 1
 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 102/207 (49%), Gaps = 19/207 (9%)
Query: 166 KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKP 225
           +L V  E+IAE+ S+ TGIP S       E+ +R++  L KRV GQ++AI  + +A+ + 
Sbjct: 518 RLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA 577
Query: 226 KAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES 285
           +A  K     R +G FLF GP   GK ELAK +A  L+D  +    +I  DM  Y E  +
Sbjct: 578 RAGLK--DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEA---MIRIDMTEYMEKHA 632
Query: 286 IKHFFDS------------LAALVKKRPYSVVLFDKIEKAXXXXXXXXXXXXXTDFNRKA 333
           +     +            L   V++RPYSV+LFD+IEKA              D  R  
Sbjct: 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA--HPDVFNILLQILDDGRLT 690
Query: 334 TRGIAAFDLTNTLIIMTSDLKDEQVYE 360
                  D  NT+II+TS+L    + E
Sbjct: 691 DSHGRTVDFRNTVIILTSNLGSPLILE 717

>pdb|3PXI|A Chain A, Structure Of Meca108:clpc Length = 758

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 9/199 (4%)
Query: 164 KEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALT 223
           +E   V V++IA V S  TG+P S       ++ + ++  L  RV GQ++A+  + +A+ 
Sbjct: 449 QENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVR 508
Query: 224 KPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL 283
           + +A  K    +R +G F+F GP   GK ELA+A+A  ++ + ++   +I  DM  Y E 
Sbjct: 509 RARAGLK--DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEES---MIRIDMSEYMEK 563
Query: 284 ESIKHFFDSLAALVKKRPYSVVLFDKIEKAXXXXXXXXXXXXXTDFNRKATRGIAAFDLT 343
            S       L   V+++PYSVVL D IEKA              D     ++G    D  
Sbjct: 564 HSTSG--GQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLE-DGRLTDSKG-RTVDFR 619
Query: 344 NTLIIMTSDLKDEQVYEVM 362
           NT++IMTS++   +  +VM
Sbjct: 620 NTILIMTSNVGASEKDKVM 638

>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb Length = 308

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 78/167 (46%), Gaps = 19/167 (11%)
Query: 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDN 265
           KRV GQ++AI  + +A+ + +A  K     R +G FLF GP   GK ELAK +A  L+D 
Sbjct: 14  KRVVGQDEAIRAVADAIRRARAGLK--DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 71
Query: 266 NDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLFDKIEKA 313
            +    +I  DM  Y E  ++     +            L   V++RPYSV+LFD IEKA
Sbjct: 72  EEA---MIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA 128
Query: 314 XXXXXXXXXXXXXTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360
                         D  R         D  NT+II+TS+L    + E
Sbjct: 129 --HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILE 173

>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb Length = 311

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDN 265
           KRV GQ++AI  + +A+ + +A  K     R +G FLF GP   GK ELAK +A  L+D 
Sbjct: 17  KRVVGQDEAIRAVADAIRRARAGLK--DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74
Query: 266 NDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLFDKIEKA 313
            +     I  D   Y E  ++     +            L   V++RPYSV+LFD IEKA
Sbjct: 75  EEA---XIRIDXTEYXEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA 131
Query: 314 XXXXXXXXXXXXXTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE 360
                         D  R         D  NT+II TS+L    + E
Sbjct: 132 HPDVFNILLQXL--DDGRLTDSHGRTVDFRNTVIIXTSNLGSPLILE 176

>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And Regulator Of Clpap Protease: Structural Basis Of Differences In Function Of The Two Aaa+ Atpase Domains Length = 758

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 87/186 (46%), Gaps = 35/186 (18%)
Query: 150 KILDQID-----ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRL 204
           K +D ID     AR+    K K  V+V +I  V +++  IP         +    +  RL
Sbjct: 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456
Query: 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLS-SRRQLGLFLFAGPNCSGKAE----LAKAIA 259
           K  VFGQ+ AI+ + EA+   K A+ GL    + +G FLFAGP   GK E    L+KA+ 
Sbjct: 457 KMLVFGQDKAIEALTEAI---KMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513
Query: 260 NELYDNNDNDNHLIHFDMGNYTELESIKHF---------FDSLAAL---VKKRPYSVVLF 307
            E          L+ FDM  Y E  ++            FD    L   V K P++V+L 
Sbjct: 514 IE----------LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLL 563
Query: 308 DKIEKA 313
           D+IEKA
Sbjct: 564 DEIEKA 569

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	550
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	6e-39
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	6e-37
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	3e-34
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	1e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Length = 758

 Score =  150 bits (382), Expect = 6e-39
 Identities = 75/269 (27%), Positives = 118/269 (43%), Gaps = 43/269 (15%)

Query: 150 KILDQID-----ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRL 204
           K +D ID     AR+    K K  V+V +I  V +++  IP         +    +  RL
Sbjct: 397 KAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456

Query: 205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQLGLFLFAGPNCSGKAELAKAIANELY 263
           K  VFGQ+ AI+ + EA+   K A+ GL    + +G FLFAGP   GK E+   ++  L 
Sbjct: 457 KMLVFGQDKAIEALTEAI---KMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513

Query: 264 DNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRPYSVVLFDKIE 311
                   L+ FDM  Y E  ++     +            L   V K P++V+L D+IE
Sbjct: 514 I------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIE 567

Query: 312 KANSSILNLLLKILK----TDFN-RKATRGIAAFDLTNTLIIMTSDLKDEQVYEVML--- 363
           KA+  + N+LL+++     TD N RKA       D  N +++MT++    +     +   
Sbjct: 568 KAHPDVFNILLQVMDNGTLTDNNGRKA-------DFRNVVLVMTTNAGVRETERKSIGLI 620

Query: 364 -TATYGRVNEVTGSLFKPSLLKLLDKLVV 391
                    E    +F P     LD ++ 
Sbjct: 621 HQDNSTDAMEEIKKIFTPEFRNRLDNIIW 649

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Length = 758

 Score =  145 bits (367), Expect = 6e-37
 Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 40/239 (16%)

Query: 164 KEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALT 223
           +E   V V++IA V S  TG+P S       ++ + ++  L  RV GQ++A+  + +A+ 
Sbjct: 449 QENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAV- 507

Query: 224 KPKAAKKGLSS-RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE 282
             + A+ GL   +R +G F+F GP   GK ELA+A+A  ++ + ++   +I  DM  Y E
Sbjct: 508 --RRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEES---MIRIDMSEYME 562

Query: 283 LESIKHFFDSLAA-----LVKKRPYSVVLFDKIEKANSSILNLLLKILK----TD-FNRK 332
               KH   S +       V+++PYSVVL D IEKA+  + N+LL++L+    TD   R 
Sbjct: 563 ----KH---STSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRT 615

Query: 333 ATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
                   D  NT++IMTS++   +  +VM               F+P  +  +D+++V
Sbjct: 616 V-------DFRNTILIMTSNVGASEKDKVM---------GELKRAFRPEFINRIDEIIV 658

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854

 Score =  136 bits (346), Expect = 3e-34
 Identities = 110/390 (28%), Positives = 170/390 (43%), Gaps = 110/390 (28%)

Query: 74  ELDKHKYFLRRAV----VEYEQLVKEDTDHSSRSFWLRQIDNELKD-------------- 115
           E+D     L R      +E E L KE  D  S+   L+ I+ E+                
Sbjct: 402 EIDA----LERKKLQLEIEREALKKE-KDPDSQE-RLKAIEAEIAKLTEEIAKLRAEWER 455

Query: 116 --AFFELVSFVK-----LRMQVEYDDFVSCVHDAKRVKDYSKI--------------LDQ 154
                  +   +     +R ++E          A+R  D ++               ++ 
Sbjct: 456 EREILRKLREAQHRLDEVRREIE---------LAERQYDLNRAAELRYGELPKLEAEVEA 506

Query: 155 IDARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDA 214
           +  ++ G    +L V  E+IAE+ S+ TGIP S       E+ +R++  L KRV GQ++A
Sbjct: 507 LSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEA 566

Query: 215 IDVIFEALTKPKAAKKGLSS-RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI 273
           I  + +A+ + +A   GL    R +G FLF GP   GK ELAK +A  L+D    +  +I
Sbjct: 567 IRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMI 620

Query: 274 HFDMGNYTELESIKHFFDSLAAL-------------------VKKRPYSVVLFDKIEKAN 314
             DM  Y E    KH   +++ L                   V++RPYSV+LFD+IEKA+
Sbjct: 621 RIDMTEYME----KH---AVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH 673

Query: 315 SSILNLLLKILK----TDFNRKATRGIAAFDLTNTLIIMTSDL---------KDEQVYEV 361
             + N+LL+IL     TD +   T      D  NT+II+TS+L         +    YE 
Sbjct: 674 PDVFNILLQILDDGRLTD-SHGRT-----VDFRNTVIILTSNLGSPLILEGLQKGWPYER 727

Query: 362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
           +       V +V    F+P  L  LD++VV
Sbjct: 728 I----RDEVFKVLQQHFRPEFLNRLDEIVV 753

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Length = 311

 Score =  117 bits (296), Expect = 1e-29
 Identities = 78/230 (33%), Positives = 114/230 (49%), Gaps = 56/230 (24%)

Query: 195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQLGLFLFAGPNCSGKAE 253
           E+ +R++  L KRV GQ++AI  + +A+ + +A   GL    R +G FLF GP   GK E
Sbjct: 6   EKLLRLEEELHKRVVGQDEAIRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTE 62

Query: 254 LAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAAL----------------- 296
           LAK +A  L+D    +  +I  DM  Y E    KH   +++ L                 
Sbjct: 63  LAKTLAATLFDT---EEAMIRIDMTEYME----KH---AVSRLIGAPPGYVGYEEGGQLT 112

Query: 297 --VKKRPYSVVLFDKIEKANSSILNLLLKILK----TDFNRKATRGIAAFDLTNTLIIMT 350
             V++RPYSV+LFD IEKA+  + N+LL++L     TD +   T      D  NT+IIMT
Sbjct: 113 EAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTD-SHGRT-----VDFRNTVIIMT 166

Query: 351 SDL---------KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV 391
           S+L         +    YE +       V +V    F+P  L  LD++VV
Sbjct: 167 SNLGSPLILEGLQKGWPYERI----RDEVFKVLQQHFRPEFLNRLDEIVV 212

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 80.3 bits (197), Expect = 6e-16
 Identities = 84/519 (16%), Positives = 159/519 (30%), Gaps = 147/519 (28%)

Query: 39  QHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELD-KHKYFLRRAVV---EYEQLVK 94
            H  +  TGE + ++ DIL           D +    D K    + ++++   E + ++ 
Sbjct: 4   HHHMDFETGEHQYQYKDILS-------VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM 56

Query: 95  EDTDHSS--RSFW-LRQIDNELKDAFFELV-----SFVKLRMQVEYDDFVSCVHDAKRVK 146
                S   R FW L     E+   F E V      F+   ++ E          +   +
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMTR 110

Query: 147 DYSKILDQI--DARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRL 204
            Y +  D++  D +V  K+         ++ +   +L          +P +  + + G L
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL----------RPAK-NVLIDGVL 159

Query: 205 K--KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLF-LFAGPNCSGKAELAKAIANE 261
              K       A+DV              +  +    +F L    NC+    + + +   
Sbjct: 160 GSGKTWV----ALDV---------CLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQKL 205

Query: 262 LYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLL 321
           LY  + N              + SI+     L  L+K +PY                N L
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQ---AELRRLLKSKPYE---------------NCL 247

Query: 322 LKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRV--NEVTGSLFK 379
           L +L  +          AF+L+  +++ T   + +QV + +  AT   +  +  + +L  
Sbjct: 248 L-VLL-NVQNAKA--WNAFNLSCKILLTT---RFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 380 PSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN 439
             +  LL K     L     D     L                      +T+    ++  
Sbjct: 301 DEVKSLLLKY----LDCRPQD-----LPREVL-----------------TTNPR-RLSII 333

Query: 440 AARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGV 499
           A        +GL  W D                 + H + ++   + ES           
Sbjct: 334 AESIR----DGLATW-DN----------------WKHVNCDKLTTIIES----------- 361

Query: 500 EYWWEESTEGLSLEELKKYMDSLEALRNNVAIKLEEMMM 538
                 S   L   E +K  D L     +  I    + +
Sbjct: 362 ------SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 9e-11
 Identities = 96/652 (14%), Positives = 174/652 (26%), Gaps = 234/652 (35%)

Query: 2   KEHKFLVKEMDNQIVSLEKIHRL----------QIQ---DEAL-----FLASRIAQHPRN 43
           +E   ++   D     +    RL           +Q   +E L     FL S I    R 
Sbjct: 49  EEIDHIIMSKDA----VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 44  KATGELRERFIDILLKGIKRCLNSRDKYQKELDKH-KYFLRRAVVEYEQLVKEDTDHSSR 102
            +   +   +I+            RD+   +     KY + R      Q           
Sbjct: 105 PSM--MTRMYIE-----------QRDRLYNDNQVFAKYNVSR-----LQPYL-------- 138

Query: 103 SFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGK 162
                    +L+ A  EL                         +    +L      + G 
Sbjct: 139 ---------KLRQALLEL-------------------------RPAKNVL------IDGV 158

Query: 163 F---KEKLAVDVEEIAEVASKLTGIPASWF----CTKPEERYMRVQG---RLKKRVFGQN 212
               K  +A+DV    +V  K+      W     C  PE     +Q    ++      ++
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 213 DAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELY--DNNDNDN 270
           D    I   +   +A  + L   +          NC             L    N  N  
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPY-------ENC-------------LLVLLNVQNAK 257

Query: 271 HLIHFDMGNYTELES-IKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDF 329
               F++     L +  K   D L+A              +        +LLLK L    
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSLLLKYLDCRP 315

Query: 330 N---RKATRG-------IAAFDLTNTLIIMTSDLKDE----QVYEVMLTATYGRVNEVTG 375
               R+           IA              ++D       ++ +       + E + 
Sbjct: 316 QDLPREVLTTNPRRLSIIAES------------IRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 376 SLFKPSLLK-LLDKLVVIDLAVPLLDTTRLLLREWACEET----------------KRRN 418
           ++ +P+  + + D+L V   +  +   T LL   W                     +++ 
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 419 NDSKAVI---------VCPSTSALVH---IAS-NAARKYGQNGEGLKRWMDQRPSADHVI 465
            +S   I            +  AL H   +   N  + +  +           P  D   
Sbjct: 422 KESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDDLIP-------PYLDQYF 473

Query: 466 DKFLRDAGYNHQSK-EETEDMEESTELGGGGGGGVEY----W-----------WEESTEG 509
              +   G+ H    E  E M     +         +    +           W  S   
Sbjct: 474 YSHI---GH-HLKNIEHPERMTLFRMV---------FLDFRFLEQKIRHDSTAWNASGSI 520

Query: 510 LS-LEELKKYMD-----------SLEALRNNVAIKLEEMMMRRACERDLLSF 549
           L+ L++LK Y              + A+ + +  K+EE ++      DLL  
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFL-PKIEENLICSKY-TDLLRI 570

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	550
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	100.0
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	100.0
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	100.0
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	100.0
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.96
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.94
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.93
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.92
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.92
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.91
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.91
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.9
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.88
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.87
3pvs_A	447	Replication-associated recombination protein A; ma	99.83
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.81
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.79
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.78
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.77
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.76
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.75
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.75
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.74
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.74
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.74
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.73
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.72
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.72
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.72
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.72
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.72
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.72
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.72
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.71
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.71
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.71
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.71
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.7
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.7
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.69
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.69
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.68
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.68
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.68
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.67
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.67
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.66
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.66
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.66
3co5_A	143	Putative two-component system transcriptional RES	99.65
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.63
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.63
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.62
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.62
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.61
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.61
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.61
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.59
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.59
3bos_A	242	Putative DNA replication factor; P-loop containing	99.58
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.58
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.58
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.58
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.57
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.56
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.55
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.54
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.54
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.53
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.52
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.5
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.5
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.49
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.49
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.49
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.47
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.47
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.45
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.41
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.41
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.4
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.39
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.39
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.35
3f8t_A	506	Predicted ATPase involved in replication control,	99.19
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.15
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.1
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.08
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	99.01
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.97
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	98.92
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.88
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.86
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.75
2qgz_A	308	Helicase loader, putative primosome component; str	98.74
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.73
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.62
2fna_A	357	Conserved hypothetical protein; structural genomic	98.61
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.48
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.39
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.22
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.99
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.99
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.97
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.97
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.86
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.7
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.69
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.67
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.65
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.62
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.52
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.5
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.47
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.45
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.39
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.37
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.34
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.32
2xxa_A	433	Signal recognition particle protein; protein trans	97.27
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.26
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.26
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.24
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.23
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.21
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.19
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.17
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.16
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.16
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.15
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.15
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.11
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.1
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.09
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.08
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.07
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.0
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	96.97
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.95
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.94
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.94
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.92
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.92
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.91
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.9
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.9
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.89
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.88
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.88
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.83
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.83
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.81
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.8
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.8
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.8
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.79
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.78
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.77
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.77
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.77
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.74
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.74
1via_A	175	Shikimate kinase; structural genomics, transferase	96.73
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.71
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.69
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.69
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.68
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.68
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.68
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.67
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.67
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.66
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	96.66
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.65
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.64
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.63
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.61
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.6
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.57
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.57
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.57
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.55
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.55
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.55
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.54
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.52
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.5
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.5
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.5
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.48
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.48
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.46
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	96.45
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.45
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.44
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.42
2og2_A	359	Putative signal recognition particle receptor; nuc	96.4
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.39
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.38
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.37
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.36
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.36
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.35
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.35
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.33
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.32
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.32
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.31
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.31
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.29
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.28
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.28
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.28
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.27
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.27
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.26
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.25
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.18
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.17
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.17
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.16
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.16
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.15
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.15
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	96.14
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.13
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.12
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.11
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.1
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.1
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.09
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.09
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.07
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.07
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.07
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.06
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.06
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.04
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.04
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.02
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.01
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.01
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.0
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.99
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.99
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.97
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	95.97
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	95.96
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.95
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.94
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.94
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.91
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.91
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.9
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.89
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.88
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.86
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.84
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.83
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.82
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	95.82
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	95.81
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.8
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.8
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	95.76
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.74
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	95.74
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	95.73
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.69
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	95.65
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.65
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.61
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.61
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.6
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	95.6
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.59
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.55
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.54
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.54
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.54
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.5
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	95.47
1qzm_A	94	ATP-dependent protease LA; oligomerization domain,	95.47
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.46
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.45
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.44
2eyq_A	1151	TRCF, transcription-repair coupling factor; MFD, S	95.42
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	95.39
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	95.38
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.36
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.34
3h1t_A	590	Type I site-specific restriction-modification syst	95.34
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.32
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.25
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	95.23
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.22
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	95.15
3io5_A	333	Recombination and repair protein; storage dimer, i	95.15
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	95.15
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.12
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.12
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.12
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.08
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.05
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.05
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.04
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.02
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	95.01
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.01
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	94.99
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.97
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.95
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	94.92
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	94.89
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	94.89
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.88
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	94.8
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.72
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.7
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.68
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	94.67
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.57
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.5
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	94.39
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	94.33
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	94.3
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	94.25
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	94.21
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	94.14
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	94.14
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	94.07
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.05
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	94.04
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	94.04
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	93.94
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	93.94
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	93.91
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	93.89
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	93.86
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	93.84
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.8
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	93.79
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	93.74
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	93.74
1b0u_A	262	Histidine permease; ABC transporter, transport pro	93.7
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	93.68
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	93.64
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	93.64
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	93.63
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	93.57
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	93.56
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	93.54
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	93.52
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.48
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	93.46
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	93.44
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	93.44
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	93.41
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	93.4
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	93.34
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	93.33
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	93.32
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	93.32
1g6h_A	257	High-affinity branched-chain amino acid transport	93.29
3ice_A	422	Transcription termination factor RHO; transcriptio	93.29
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	93.26
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	93.26
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	93.24
1nrj_B	218	SR-beta, signal recognition particle receptor beta	93.23
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	93.22
1sgw_A	214	Putative ABC transporter; structural genomics, P p	93.17
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	93.17
1ji0_A	240	ABC transporter; ATP binding protein, structural g	93.16
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	93.16
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	93.16
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	93.15
2ghi_A	260	Transport protein; multidrug resistance protein, M	93.14
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	93.13
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	93.08
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	93.02
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	93.01
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	92.98
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	92.94
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	92.93
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	92.92
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	92.91
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	92.87
2wji_A	165	Ferrous iron transport protein B homolog; membrane	92.83
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	92.81
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	92.81
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	92.76
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	92.74
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	92.74
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	92.73
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	92.69
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	92.69
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	92.66
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	92.6
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.59
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	92.57
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	92.55
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	92.53
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	92.52
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	92.52
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	92.49
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	92.48
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	92.46
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	92.44
3igf_A	374	ALL4481 protein; two-domained protein consisting o	92.44
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	92.39
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	92.35
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	92.32
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	92.28
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	92.27
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	92.26
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	92.2
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	92.19
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	92.17
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	92.15
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	92.13
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	92.11
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	92.1
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	92.1
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.08
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	92.06
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	92.05
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	92.04
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	92.04
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	92.02
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	92.01
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	92.0
2fwr_A	472	DNA repair protein RAD25; DNA unwinding, XPB, DNA	92.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	91.98
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	91.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	91.95
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	91.92
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	91.92
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	91.92
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	91.89
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	91.89
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	91.88
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	91.87
2jlq_A	451	Serine protease subunit NS3; ribonucleoprotein, nu	91.85
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	91.84
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	91.82
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	91.81
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	91.8
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	91.77
2fh5_B	214	SR-beta, signal recognition particle receptor beta	91.76
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	91.76
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	91.75
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	91.73
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	91.71
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	91.71
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	91.71
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	91.66
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	91.66
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	91.64
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	91.62
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	91.57
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	91.54
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	91.47
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	91.44
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	91.39
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	91.33
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	91.33
1fuu_A	394	Yeast initiation factor 4A; IF4A, helicase, DEAD-b	91.32
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	91.3
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	91.3
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	91.3
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	91.29
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.27
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	91.24
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	91.18
3l9o_A	1108	ATP-dependent RNA helicase DOB1; REC-A fold, winge	91.16
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	91.12
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	91.12
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	91.1
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	91.07
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	90.99
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	90.99
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	90.99
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.99
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	90.96
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	90.95
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	90.93
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	90.9
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	90.77
2xgj_A	1010	ATP-dependent RNA helicase DOB1; hydrolase-RNA com	90.71
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	90.7
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	90.7
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	90.69
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	90.68
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	90.67
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	90.67
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	90.63
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	90.63
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	90.62
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	90.62
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	90.61

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=100.00  E-value=1.9e-58  Score=533.59  Aligned_cols=454  Identities=28%  Similarity=0.423  Sum_probs=400.9

Q ss_pred             hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633            5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF   81 (550)
Q Consensus         5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~   81 (550)
                      ..+..||+++..+|+.||+|.|+|+|+.+++.+|+|  |+++|+|||||||++|+   ++++...+.|   ..++.++++
T Consensus       335 ~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r--~i~~~~lp~kai~lldea~a~~~~~~~~~p---~~l~~~~~~  409 (854)
T 1qvr_A          335 EETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR--YITERRLPDKAIDLIDEAAARLRMALESAP---EEIDALERK  409 (854)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH--HCCSSCTHHHHHHHHHHHHHHHHHTTTTHH---HHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh--hcccccChHHHHHHHHHHHHHHHhhccCCc---hhHHHHHHH
Confidence            357899999999999999999999999999999999  99999999999999999   6788888999   999999999


Q ss_pred             HHHHHHHHHHHhhccCCchhhhhhHHHHHHHH---HHHHHHHHHHHHH---------HHHHHHHHHHHhHHHhhhhccHH
Q 036633           82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNEL---KDAFFELVSFVKL---------RMQVEYDDFVSCVHDAKRVKDYS  149 (550)
Q Consensus        82 ~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~  149 (550)
                      +.+++.|+.++.++ .+..+..+ +.++++++   +.++..+..+|+.         .++++++.++.+++.+.+.++++
T Consensus       410 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (854)
T 1qvr_A          410 KLQLEIEREALKKE-KDPDSQER-LKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLN  487 (854)
T ss_dssp             HHHHHHHHHHHSSC-SSHHHHSC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHH
T ss_pred             HHHHHHHHHHHHhc-cccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHH
Confidence            99999999999988 66667777 77787777   8889999999982         44566667777778888888888


Q ss_pred             HHHH-------HHHHHHhhhhc---C----CCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHH
Q 036633          150 KILD-------QIDARVHGKFK---E----KLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAI  215 (550)
Q Consensus       150 ~~~~-------~~~~~~~~~~~---~----~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai  215 (550)
                      ++.+       .+++++..++.   .    ...|+.+++..+|++|+|+|+.++...+.+++..++..+.+.|+||+.++
T Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~  567 (854)
T 1qvr_A          488 RAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAI  567 (854)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHH
T ss_pred             HHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHH
Confidence            8754       45566655532   1    56799999999999999999999989999999999999999999999999


Q ss_pred             HHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHH----
Q 036633          216 DVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFF----  290 (550)
Q Consensus       216 ~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~li----  290 (550)
                      ..+..++.+.   ++|+.+|++| +++||+||||||||++|++||+.+++   ...+|+++||+++++.+.++.++    
T Consensus       568 ~~l~~~i~~~---~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~---~~~~~i~i~~~~~~~~~~~s~l~g~~~  641 (854)
T 1qvr_A          568 RAVADAIRRA---RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---TEEAMIRIDMTEYMEKHAVSRLIGAPP  641 (854)
T ss_dssp             HHHHHHHHHH---GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS---SGGGEEEECTTTCCSSGGGGGC-----
T ss_pred             HHHHHHHHHH---hcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC---CCCcEEEEechhccchhHHHHHcCCCC
Confidence            9999999999   9999999999 89999999999999999999999988   77799999999999999988887    


Q ss_pred             --------hHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHh
Q 036633          291 --------DSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEV  361 (550)
Q Consensus       291 --------G~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~  361 (550)
                              |.++++++.+|++|||||||+++|+++++.|+++|++|  + ++++ |+.+||+|++||+|||.|+..+...
T Consensus       642 ~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~--~-~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~  718 (854)
T 1qvr_A          642 GYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDG--R-LTDSHGRTVDFRNTVIILTSNLGSPLILEG  718 (854)
T ss_dssp             ---------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTT--E-ECCSSSCCEECTTEEEEEECCTTHHHHHHH
T ss_pred             CCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccC--c-eECCCCCEeccCCeEEEEecCcChHHHhhh
Confidence                    37889999999999999999999999999999999999  8 9999 9999999999999999998776542


Q ss_pred             hhh-----hhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHH
Q 036633          362 MLT-----ATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHI  436 (550)
Q Consensus       362 ~~~-----~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L  436 (550)
                      ..+     .....+.+.+...|+|+|++|||.++.|.   ||+.+++..|+..++.++..++...++ .+.++++++++|
T Consensus       719 ~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~---pl~~edi~~i~~~~l~~~~~~~~~~~~-~~~~~~~a~~~L  794 (854)
T 1qvr_A          719 LQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFR---PLTKEQIRQIVEIQLSYLRARLAEKRI-SLELTEAAKDFL  794 (854)
T ss_dssp             HHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCC---CCCHHHHHHHHHHHHHHHHHHHHTTTC-EEEECHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCC---CCCHHHHHHHHHHHHHHHHHHHHhCCc-eEEECHHHHHHH
Confidence            111     11234445568899999999999999999   999999999999999999999888888 889999999999


Q ss_pred             HhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCccccccc
Q 036633          437 ASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKE  480 (550)
Q Consensus       437 ~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~  480 (550)
                      +.++| +.+  |+|+|+++|++   .+++..++.|.+..++.+.+++.
T Consensus       795 ~~~~~~~~g--n~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~  840 (854)
T 1qvr_A          795 AERGYDPVF--GARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVG  840 (854)
T ss_dssp             HHHHCBTTT--BTSTHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEECC
T ss_pred             HHcCCCCCC--ChHHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEEE
Confidence            99999 444  55999999999   99999999999988888777654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=100.00  E-value=1.1e-54  Score=496.54  Aligned_cols=410  Identities=23%  Similarity=0.385  Sum_probs=335.9

Q ss_pred             hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633            5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF   81 (550)
Q Consensus         5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~   81 (550)
                      ..+..||+++.++|+.||+|.|+|+|+.+++.+|+|  |+++|++||||||++|+   ++++...+.|   ..++.++++
T Consensus       328 ~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~--~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p---~~~~~l~~~  402 (758)
T 3pxi_A          328 DESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDR--YISDRFLPDKAIDLIDEAGSKVRLRSFTTP---PNLKELEQK  402 (758)
T ss_dssp             HHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHH--SSCCSCTTHHHHHHHHHHHHHHHHHTTC-----CCTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc--ccccCcCCcHHHHHHHHHHHHHHhhccCCC---cchhhHHHH
Confidence            357899999999999999999999999999999999  99999999999999999   5677888899   899999999


Q ss_pred             HHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHhh
Q 036633           82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHG  161 (550)
Q Consensus        82 ~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (550)
                      +.+++.|.+.+.+. .+...... +.....+++.+++.+...|..                               +   
T Consensus       403 ~~~~~~~~~~~~~~-~~~~~~~~-l~~~~~~~~~~l~~~~~~~~~-------------------------------~---  446 (758)
T 3pxi_A          403 LDEVRKEKDAAVQS-QEFEKAAS-LRDTEQRLREQVEDTKKSWKE-------------------------------K---  446 (758)
T ss_dssp             HHHHHHHHHHHHHH-CCSHHHHH-HHHHHHHHHHHHHHHHSGGGH-------------------------------H---
T ss_pred             HHHHHHHHHHHHhC-cCHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------------------------------h---
Confidence            99999998887765 44332222 222222223333333333331                               0   


Q ss_pred             hhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-ee
Q 036633          162 KFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GL  240 (550)
Q Consensus       162 ~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~  240 (550)
                      .......|+.++|+.++++|+|+|+..+...+.+.+..++..|...|+||++++..+..++.+.   ++|+.+|++| ++
T Consensus       447 ~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~---~~~~~~~~~p~~~  523 (758)
T 3pxi_A          447 QGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRA---RAGLKDPKRPIGS  523 (758)
T ss_dssp             HHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHH---TTTCSCTTSCSEE
T ss_pred             hcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHH---HcccCCCCCCceE
Confidence            0013567999999999999999999999988888889999999999999999999999999999   9999999999 89


Q ss_pred             EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHH
Q 036633          241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNL  320 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~  320 (550)
                      +||+||||||||++|+++|+.+++   +..+|+++||++|++.+..+  .|.++++++.+|++|||||||+++|+++++.
T Consensus       524 ~Ll~Gp~GtGKT~lA~ala~~l~~---~~~~~i~i~~s~~~~~~~~~--~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~  598 (758)
T 3pxi_A          524 FIFLGPTGVGKTELARALAESIFG---DEESMIRIDMSEYMEKHSTS--GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNI  598 (758)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHHS---CTTCEEEEEGGGGCSSCCCC-----CHHHHHHCSSSEEEEECGGGSCHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcC---CCcceEEEechhcccccccc--cchhhHHHHhCCCeEEEEeCccccCHHHHHH
Confidence            999999999999999999999988   88899999999999988776  5688999999999999999999999999999


Q ss_pred             HHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC
Q 036633          321 LLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL  399 (550)
Q Consensus       321 Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~  399 (550)
                      |++++++|  + ++++ |+.+++.|++||+|||.+...         ...+...+.+.|+|+|++|||.+|.|.   ||+
T Consensus       599 Ll~~le~g--~-~~~~~g~~~~~~~~~iI~ttn~~~~~---------~~~~~~~~~~~f~p~l~~Rl~~~i~~~---~l~  663 (758)
T 3pxi_A          599 LLQVLEDG--R-LTDSKGRTVDFRNTILIMTSNVGASE---------KDKVMGELKRAFRPEFINRIDEIIVFH---SLE  663 (758)
T ss_dssp             HHHHHHHS--B-CC-----CCBCTTCEEEEEESSSTTC---------CHHHHHHHHHHSCHHHHTTSSEEEECC-----C
T ss_pred             HHHHhccC--e-EEcCCCCEeccCCeEEEEeCCCChhh---------HHHHHHHHHhhCCHHHHhhCCeEEecC---CCC
Confidence            99999999  8 9999 999999999999999987643         123344556779999999999999999   999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCcc
Q 036633          400 DTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYN  475 (550)
Q Consensus       400 ~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~  475 (550)
                      .+++..|+..++..+..++...++ .+.++++++++|++.+| +.+|+  |+|+++|++   .++++.++.|.+..++.+
T Consensus       664 ~~~~~~i~~~~l~~~~~~~~~~~~-~~~~~~~a~~~l~~~~~~~~~~~--R~L~~~i~~~v~~~l~~~~l~~~~~~~~~~  740 (758)
T 3pxi_A          664 KKHLTEIVSLMSDQLTKRLKEQDL-SIELTDAAKAKVAEEGVDLEYGA--RPLRRAIQKHVEDRLSEELLRGNIHKGQHI  740 (758)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTC-EEEECHHHHHHHHGGGCCTTTTT--TTHHHHHHHHTHHHHHHHHHTTCSCSSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC-eEEECHHHHHHHHHhCCCCCCCC--hHHHHHHHHHHHHHHHHHHHcCCCCCCCEE
Confidence            999999999999999999988888 89999999999999888 55555  999999999   999999999999988888


Q ss_pred             ccccch
Q 036633          476 HQSKEE  481 (550)
Q Consensus       476 ~i~~~~  481 (550)
                      .+++.+
T Consensus       741 ~~~~~~  746 (758)
T 3pxi_A          741 VLDVED  746 (758)
T ss_dssp             EEEESS
T ss_pred             EEEEEC
Confidence            777653

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=100.00  E-value=6.9e-50  Score=457.05  Aligned_cols=363  Identities=24%  Similarity=0.328  Sum_probs=317.8

Q ss_pred             hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHhhhhhcccCCCCchHHHHHHHHHHHH
Q 036633            5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKELDKHKYFLRR   84 (550)
Q Consensus         5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~~~~~~~~~~~~~~~~l~~l~~~~~~   84 (550)
                      ..+..||+++...|+.||+|.|+++|+.+++.+|.|  |+++|++||||||++|+..+.... .|               
T Consensus       352 ~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~--~i~~~~lp~~~i~lld~a~~~~~~-~~---------------  413 (758)
T 1r6b_X          352 EETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK--YINDRHLPDKAIDVIDEAGARARL-MP---------------  413 (758)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH--HCTTSCTTHHHHHHHHHHHHHHHH-SS---------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh--hcccccCchHHHHHHHHHHHHHhc-cc---------------
Confidence            457899999999999999999999999999999999  999999999999999993222100 01               


Q ss_pred             HHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHhhhhc
Q 036633           85 AVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHGKFK  164 (550)
Q Consensus        85 ~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (550)
                                .                                                                   ..
T Consensus       414 ----------~-------------------------------------------------------------------~~  416 (758)
T 1r6b_X          414 ----------V-------------------------------------------------------------------SK  416 (758)
T ss_dssp             ----------S-------------------------------------------------------------------CC
T ss_pred             ----------c-------------------------------------------------------------------cc
Confidence                      0                                                                   00


Q ss_pred             CCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEE
Q 036633          165 EKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLF  243 (550)
Q Consensus       165 ~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf  243 (550)
                      ....|+.++|+++++.|+|+|+..+..++...+..++..|...|+||++++..+..++...   ++|+.+|++| +++||
T Consensus       417 ~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~---~~g~~~~~~p~~~~ll  493 (758)
T 1r6b_X          417 RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA---RAGLGHEHKPVGSFLF  493 (758)
T ss_dssp             CCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH---HTTCSCTTSCSEEEEE
T ss_pred             cCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH---hcccCCCCCCceEEEE
Confidence            1356999999999999999999999999999999999999999999999999999999998   9999999999 99999


Q ss_pred             eccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEecccc
Q 036633          244 AGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLFDKIE  311 (550)
Q Consensus       244 ~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~VlllDEIe  311 (550)
                      +||||||||++|+++|+.+..      +|+++||++|++.++++.++|            .+++++++.|++|||||||+
T Consensus       494 ~G~~GtGKT~la~~la~~l~~------~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~  567 (758)
T 1r6b_X          494 AGPTGVGKTEVTVQLSKALGI------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIE  567 (758)
T ss_dssp             ECSTTSSHHHHHHHHHHHHTC------EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGG
T ss_pred             ECCCCCcHHHHHHHHHHHhcC------CEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcc
Confidence            999999999999999999966      999999999999988888776            57899999999999999999


Q ss_pred             ccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCCChHHHHHhh----hhhhHhhHHHHhccCCChhhhhhc
Q 036633          312 KANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVM----LTATYGRVNEVTGSLFKPSLLKLL  386 (550)
Q Consensus       312 ka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~----~~~~~~~~~~~l~~~f~p~ll~Ri  386 (550)
                      ++|+++++.|++++++|  + ++|+ |+.+||+|++||+|||.+...+....    .......+.+.+++.|+|+|++||
T Consensus       568 ~~~~~~~~~Ll~~le~~--~-~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~  644 (758)
T 1r6b_X          568 KAHPDVFNILLQVMDNG--T-LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRL  644 (758)
T ss_dssp             GSCHHHHHHHHHHHHHS--E-EEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTC
T ss_pred             ccCHHHHHHHHHHhcCc--E-EEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhC
Confidence            99999999999999999  8 9999 99999999999999999876554311    011123445566779999999999


Q ss_pred             cceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc---hhhHH
Q 036633          387 DKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ---RPSAD  462 (550)
Q Consensus       387 d~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~---~~la~  462 (550)
                      |.+|.|.   ||+.+++..|+..++.++..++...++ .+.++++++++|+.++| +++|+  |+|+++|++   ++++.
T Consensus       645 ~~~i~~~---~l~~~~~~~i~~~~l~~~~~~~~~~~~-~~~~~~~a~~~l~~~~~~~~~g~--R~l~~~i~~~~~~~l~~  718 (758)
T 1r6b_X          645 DNIIWFD---HLSTDVIHQVVDKFIVELQVQLDQKGV-SLEVSQEARNWLAEKGYDRAMGA--RPMARVIQDNLKKPLAN  718 (758)
T ss_dssp             SEEEECC---CCCHHHHHHHHHHHHHHHHHHHHHTTE-EEEECHHHHHHHHHHHCBTTTBT--TTHHHHHHHHHTHHHHH
T ss_pred             CcceeeC---CCCHHHHHHHHHHHHHHHHHHHHHCCc-EEEeCHHHHHHHHHhCCCcCCCc--hHHHHHHHHHHHHHHHH
Confidence            9999999   999999999999999999998888887 88999999999999999 88888  999999999   88999


Q ss_pred             HHHhhhhcCCCccccccc
Q 036633          463 HVIDKFLRDAGYNHQSKE  480 (550)
Q Consensus       463 ~~l~~~~~~~~~~~i~~~  480 (550)
                      .++.|++..++.+.+++.
T Consensus       719 ~~l~~~~~~~~~~~~~~~  736 (758)
T 1r6b_X          719 ELLFGSLVDGGQVTVALD  736 (758)
T ss_dssp             HHHHSTTTTCEEEEEEEE
T ss_pred             HHHcCcCCCCCEEEEEEe
Confidence            999999988887777664

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=100.00  E-value=3.2e-36  Score=307.29  Aligned_cols=276  Identities=30%  Similarity=0.483  Sum_probs=244.2

Q ss_pred             chHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCC
Q 036633          192 KPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDN  270 (550)
Q Consensus       192 ~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~  270 (550)
                      ++.+.+..++..|.+.++||+.+++.+..++...   +.|+..|++| ++++|+||||||||++|+++|+.+..   ...
T Consensus         3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~---~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~---~~~   76 (311)
T 4fcw_A            3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA---RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD---TEE   76 (311)
T ss_dssp             HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHH---HHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS---CGG
T ss_pred             cHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH---hcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC---CCc
Confidence            4678899999999999999999999999999998   8999999999 89999999999999999999999987   667


Q ss_pred             ceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-C
Q 036633          271 HLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-I  337 (550)
Q Consensus       271 ~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g  337 (550)
                      +++.+||+.+.+....+.++|            .+++++..+|++||||||++++++++++.|+++++++  . +++. |
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~--~-~~~~~~  153 (311)
T 4fcw_A           77 AMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDG--R-LTDSHG  153 (311)
T ss_dssp             GEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHS--E-EECTTS
T ss_pred             ceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcC--E-EEcCCC
Confidence            899999999998888888874            7889999999999999999999999999999999999  7 8888 9


Q ss_pred             eEeecCCeEEEEeCCCChHHHHHhhhhh-h----HhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633          338 AAFDLTNTLIIMTSDLKDEQVYEVMLTA-T----YGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACE  412 (550)
Q Consensus       338 ~~vd~~~~iiI~TsN~g~~~~~~~~~~~-~----~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~  412 (550)
                      +.+++++++||+|||.+...+....... .    ...+.+.+...|+|+|++||+.++.|.   |++.+++..|+..++.
T Consensus       154 ~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~---p~~~~~~~~i~~~~l~  230 (311)
T 4fcw_A          154 RTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFR---PLTKEQIRQIVEIQMS  230 (311)
T ss_dssp             CEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECC---CCCHHHHHHHHHHHTH
T ss_pred             CEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeC---CCCHHHHHHHHHHHHH
Confidence            9999999999999999887776644321 1    233333446789999999999999999   9999999999999999


Q ss_pred             HHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCccccccch
Q 036633          413 ETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKEE  481 (550)
Q Consensus       413 ~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~~  481 (550)
                      ++...+...+. .+.++++++++|++++|...| |+|.|+++|++   .+++..++.+.+..++.+.+++++
T Consensus       231 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~g-n~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~~~~  300 (311)
T 4fcw_A          231 YLRARLAEKRI-SLELTEAAKDFLAERGYDPVF-GARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVGP  300 (311)
T ss_dssp             HHHHHHHTTTC-EEEECHHHHHHHHHHSCBTTT-BTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEEECS
T ss_pred             HHHHHHHhCCc-EEEeCHHHHHHHHHhCCCccC-CchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEEC
Confidence            99988877777 889999999999999983235 67999999999   789999999999888888777664

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.96  E-value=1.5e-29  Score=264.51  Aligned_cols=276  Identities=19%  Similarity=0.180  Sum_probs=184.4

Q ss_pred             HHHHhhhhcCcccCcHHHHHHHHHHHhcchh-hhcCCCCc--CCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCce
Q 036633          197 YMRVQGRLKKRVFGQNDAIDVIFEALTKPKA-AKKGLSSR--RQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHL  272 (550)
Q Consensus       197 l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~-~~~gl~~~--~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~l  272 (550)
                      ...+...|.+.|+||+.+++.+..++..... .+.+....  ..| .++||+||||||||++|++||+.+..      +|
T Consensus         6 ~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~------~~   79 (363)
T 3hws_A            6 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV------PF   79 (363)
T ss_dssp             HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC------CE
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC------CE
Confidence            3466778888899999999999998853310 02222211  123 79999999999999999999999877      99


Q ss_pred             eEEecCCCCchhhhhhH-HhHHHHHHHh-------CCCCeEEeccccccCHH--------------HHHHHHHhhhhccc
Q 036633          273 IHFDMGNYTELESIKHF-FDSLAALVKK-------RPYSVVLFDKIEKANSS--------------ILNLLLKILKTDFN  330 (550)
Q Consensus       273 i~id~s~~~~~~~~s~l-iG~lt~al~~-------~p~~VlllDEIeka~~~--------------v~~~Ll~~ld~g~~  330 (550)
                      +.++|+.+.+...+..- -+.++..+..       .+++|||||||+++++.              +++.||++|+ |..
T Consensus        80 ~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~  158 (363)
T 3hws_A           80 TMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTV  158 (363)
T ss_dssp             EEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC-
T ss_pred             EEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhc-Cce
Confidence            99999987644322111 1134444433       34579999999999987              9999999999 521


Q ss_pred             cccccC-CeEeecCCeEEEEeCCC---------ChHHHHHhhhh-----------------hhHhhH------HHHhccC
Q 036633          331 RKATRG-IAAFDLTNTLIIMTSDL---------KDEQVYEVMLT-----------------ATYGRV------NEVTGSL  377 (550)
Q Consensus       331 ~~l~d~-g~~vd~~~~iiI~TsN~---------g~~~~~~~~~~-----------------~~~~~~------~~~l~~~  377 (550)
                      ..+++. |+.+++.++++|+|||.         +.+.+......                 .....+      .......
T Consensus       159 ~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~  238 (363)
T 3hws_A          159 AAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFG  238 (363)
T ss_dssp             ---------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHT
T ss_pred             eeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcC
Confidence            214555 77777777777777776         66655442100                 000111      1222334


Q ss_pred             CChhhhhhccceeEecCCCCCCHHHHHHHHHH----HHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHH
Q 036633          378 FKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW----ACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLK  452 (550)
Q Consensus       378 f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~----~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~  452 (550)
                      |+|+|++|||.++.|.   |++.+++..|+..    .+.++...+...+. .+.++++++++|++++| ..+|+  |+|+
T Consensus       239 ~~~~l~~R~~~~~~~~---pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~-~l~~~~~a~~~L~~~~~~~~~ga--R~L~  312 (363)
T 3hws_A          239 LIPEFIGRLPVVATLN---ELSEEALIQILKEPKNALTKQYQALFNLEGV-DLEFRDEALDAIAKKAMARKTGA--RGLR  312 (363)
T ss_dssp             CCHHHHTTCCEEEECC---CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTC-EEEECHHHHHHHHHHHHHTTCTT--TTHH
T ss_pred             CCHHHhcccCeeeecC---CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc-eEEECHHHHHHHHHhhcCCccCc--hHHH
Confidence            9999999999999999   9999999999998    77777777777788 89999999999999888 66666  9999


Q ss_pred             HHHcchhhHHHHHhhhhcCC-Cccccccchhhccc
Q 036633          453 RWMDQRPSADHVIDKFLRDA-GYNHQSKEETEDME  486 (550)
Q Consensus       453 ~~i~~~~la~~~l~~~~~~~-~~~~i~~~~~~~~~  486 (550)
                      ++|++ .+...+.......+ ..+.|+.+......
T Consensus       313 ~~ie~-~~~~~l~~~~~~~~~~~~~I~~~~v~~~~  346 (363)
T 3hws_A          313 SIVEA-ALLDTMYDLPSMEDVEKVVIDESVIDGQS  346 (363)
T ss_dssp             HHHHH-HHHHHHHSTTTCCCSEEEECHHHHTTCCS
T ss_pred             HHHHH-HHHHHHHhcccccCCceeEEcHHHHhCcC
Confidence            99997 44444443222111 34555555554444

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.94  E-value=9.8e-27  Score=244.28  Aligned_cols=274  Identities=17%  Similarity=0.147  Sum_probs=178.9

Q ss_pred             HHHHHhhhhcCcccCcHHHHHHHHHHHh----cchhhhcCC-------CC----------cCCC-eeEEEeccCCCcHHH
Q 036633          196 RYMRVQGRLKKRVFGQNDAIDVIFEALT----KPKAAKKGL-------SS----------RRQL-GLFLFAGPNCSGKAE  253 (550)
Q Consensus       196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~----~~~~~~~gl-------~~----------~~~p-~~lLf~Gp~GvGKT~  253 (550)
                      ++..+.+.|.+.|+||++|++.+..++.    +.   ++|+       .+          ...+ .+++|+||||||||+
T Consensus        11 ~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~---~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~   87 (376)
T 1um8_A           11 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRL---SFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTL   87 (376)
T ss_dssp             CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHH
T ss_pred             CHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHH---HhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHH
Confidence            3567888999999999999999998883    33   3333       11          1123 789999999999999


Q ss_pred             HHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH-HhHHHHHH-------HhCCCCeEEeccccccCHH---------
Q 036633          254 LAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF-FDSLAALV-------KKRPYSVVLFDKIEKANSS---------  316 (550)
Q Consensus       254 lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l-iG~lt~al-------~~~p~~VlllDEIeka~~~---------  316 (550)
                      +|+++|+.+..      +++.+||+.+........- -+.+...+       ...+++|||||||+++++.         
T Consensus        88 la~~la~~l~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~  161 (376)
T 1um8_A           88 MAQTLAKHLDI------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRD  161 (376)
T ss_dssp             HHHHHHHHTTC------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC------------
T ss_pred             HHHHHHHHhCC------CEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecc
Confidence            99999999866      9999999987643221111 11233332       2346789999999999998         


Q ss_pred             -----HHHHHHHhhhhccccccccC-CeE--------eecCCeEEEEeCCCC-hHHHHH-hh-----h--hhh-------
Q 036633          317 -----ILNLLLKILKTDFNRKATRG-IAA--------FDLTNTLIIMTSDLK-DEQVYE-VM-----L--TAT-------  366 (550)
Q Consensus       317 -----v~~~Ll~~ld~g~~~~l~d~-g~~--------vd~~~~iiI~TsN~g-~~~~~~-~~-----~--~~~-------  366 (550)
                           +++.|+++++.+.+. +.+. |+.        ++.+|.++|+|+|.. .+.... ..     +  ...       
T Consensus       162 ~~~~~~~~~Ll~~le~~~~~-~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~  240 (376)
T 1um8_A          162 VSGEGVQQALLKIVEGSLVN-IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQE  240 (376)
T ss_dssp             --CHHHHHHHHHHHHCCEEC----------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTT
T ss_pred             cchHHHHHHHHHHhhcccee-cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchh
Confidence                 999999999977333 3444 544        445666666666631 111100 00     0  000       


Q ss_pred             ----HhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH----HHHHHHHHHhccCCCccccCCHHHHHHHHh
Q 036633          367 ----YGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE----WACEETKRRNNDSKAVIVCPSTSALVHIAS  438 (550)
Q Consensus       367 ----~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~----~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~  438 (550)
                          .-.........|+|+|++||+.++.|.   ||+.+++..|+.    ..+.++...+...+. .+.++++++++|+.
T Consensus       241 ~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~---~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~  316 (376)
T 1um8_A          241 AILHLVQTHDLVTYGLIPELIGRLPVLSTLD---SISLEAMVDILQKPKNALIKQYQQLFKMDEV-DLIFEEEAIKEIAQ  316 (376)
T ss_dssp             TSGGGCCHHHHHHTTCCHHHHTTCCEEEECC---CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTC-EEEECHHHHHHHHH
T ss_pred             HHHhhcCHHHHhhcCCChHHhcCCCceeecc---CCCHHHHHHHHhhhHHHHHHHHHHHHhhcCc-eEEECHHHHHHHHH
Confidence                000011123468999999999999999   999999999998    466666666666777 88999999999999


Q ss_pred             cCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhcc
Q 036633          439 NAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDM  485 (550)
Q Consensus       439 ~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~  485 (550)
                      ++|+..| |+|.|+++|++ .+...+....-...+.+.|+.+.....
T Consensus       317 ~~~~~~~-~~R~L~~~le~-~~~~~~~~~~~~~~~~~~i~~~~v~~~  361 (376)
T 1um8_A          317 LALERKT-GARGLRAIIED-FCLDIMFDLPKLKGSEVRITKDCVLKQ  361 (376)
T ss_dssp             HHHHTTC-TGGGHHHHHHH-HHHHHHHTGGGGTTSEEEECHHHHTTS
T ss_pred             Hhccccc-CcHHHHHHHHH-HHHHHHhhccCCCCCEEEEeHHHhcCC
Confidence            8883334 55999999997 444444433222345556666555443

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.93  E-value=1.9e-25  Score=228.03  Aligned_cols=280  Identities=15%  Similarity=0.144  Sum_probs=198.9

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|++.++..+...+...   .      ..+.++||+||||||||++|++|+..+..   ...+|+.+||+.+.+...
T Consensus         2 ~~iig~s~~~~~~~~~~~~~---a------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~---~~~~~v~v~~~~~~~~l~   69 (304)
T 1ojl_A            2 SHMIGSSPAMQHLLNEIAMV---A------PSDATVLIHGDSGTGKELVARALHACSAR---SDRPLVTLNCAALNESLL   69 (304)
T ss_dssp             -CCCCCSHHHHHHHHHHHHH---C------STTSCEEEESCTTSCHHHHHHHHHHHSSC---SSSCCCEEECSSCCHHHH
T ss_pred             CCcEECCHHHHHHHHHHHHH---h------CCCCcEEEECCCCchHHHHHHHHHHhCcc---cCCCeEEEeCCCCChHHH
Confidence            46899999999999998875   1      13378999999999999999999999877   677999999999987776


Q ss_pred             hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633          286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~  353 (550)
                      .+.++|    .++.+       +....+++||||||+.+++++|..|+++++++  . +... +....-.++.||+|||.
T Consensus        70 ~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~--~-~~~~g~~~~~~~~~riI~atn~  146 (304)
T 1ojl_A           70 ESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQER--E-VQRVGSNQTISVDVRLIAATHR  146 (304)
T ss_dssp             HHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSS--B-CCBTTBCCCCBCCCEEEEEESS
T ss_pred             HHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcC--E-eeecCCcccccCCeEEEEecCc
Confidence            777776    22222       22234589999999999999999999999999  6 4433 33333345679999998


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      .......              ...|+++|++|++ ++.+. .|||+  .+|+..++..++..+...+...   ...++++
T Consensus       147 ~l~~~v~--------------~g~fr~~L~~Rl~-~~~i~-lPpL~eR~edi~~l~~~~l~~~~~~~~~~---~~~~s~~  207 (304)
T 1ojl_A          147 DLAEEVS--------------AGRFRQDLYYRLN-VVAIE-MPSLRQRREDIPLLADHFLRRFAERNRKV---VKGFTPQ  207 (304)
T ss_dssp             CHHHHHH--------------HTSSCHHHHHHHS-SEEEE-CCCSGGGGGGHHHHHHHHHHHHHHHTTCC---CCCBCHH
T ss_pred             cHHHHHH--------------hCCcHHHHHhhcC-eeEEe-ccCHHHhHhhHHHHHHHHHHHHHHHhccC---ccCCCHH
Confidence            7544332              3689999999995 55544 23898  6899999999998887765443   3478999


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCcccccccccC-CC
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWWEESTE-GL  510 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~~~~~~-~l  510 (550)
                      ++++|..++||  | |+|.|++++++ .+.   +.    .++.  |+.+.   ++.....  .. ..  ...+ ... .+
T Consensus       208 a~~~L~~~~wp--G-nvReL~~~l~~-~~~---~~----~~~~--i~~~~---l~~~~~~--~~-~~--~~~~-l~~~~~  265 (304)
T 1ojl_A          208 AMDLLIHYDWP--G-NIRELENAIER-AVV---LL----TGEY--ISERE---LPLAIAA--TP-IK--TEYS-GEIQPL  265 (304)
T ss_dssp             HHHHHHHCCCS--S-HHHHHHHHHHH-HHH---HC----CSSS--BCGGG---SCGGGC------------CC-SSCCCH
T ss_pred             HHHHHHcCCCC--C-CHHHHHHHHHH-HHH---hC----CCCc--ccHHh---hhhhhcc--CC-Cc--cCCC-cchhhH
Confidence            99999999886  7 99999999997 221   11    1222  22222   2211100  00 00  0000 001 23


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 036633          511 SLEELKKYMDSLEALRNNVAIKLEEMMMRRA  541 (550)
Q Consensus       511 sl~eleq~~~ale~l~~nl~~~a~~l~~~~~  541 (550)
                      ...|.+.+..+|+...+|....|+.|.+.+.
T Consensus       266 ~~~e~~~i~~~l~~~~gn~~~aA~~Lgi~r~  296 (304)
T 1ojl_A          266 VDVEKEVILAALEKTGGNKTEAARQLGITRK  296 (304)
T ss_dssp             HHHHHHHHHHHHHTTTTCHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHH
Confidence            3456667788999999999999999988764

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.92  E-value=2.1e-24  Score=236.98  Aligned_cols=292  Identities=17%  Similarity=0.198  Sum_probs=199.4

Q ss_pred             HHHHHHHHHhhhhcCCCcc-CHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhh
Q 036633          151 ILDQIDARVHGKFKEKLAV-DVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAK  229 (550)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~v-~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~  229 (550)
                      +.+.+++++.+++...... ....+.+.+..++++||.+...+. ..+..+...|.+.++|+++++..+...+...   .
T Consensus        26 ~~~~~~~el~~l~~~~~~~~e~~~~~~~l~~~~~lp~~~~~~~~-~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~---~  101 (543)
T 3m6a_A           26 VKETALKELNRYEKIPSSSAESSVIRNYIDWLVALPWTDETDDK-LDLKEAGRLLDEEHHGLEKVKERILEYLAVQ---K  101 (543)
T ss_dssp             HHHHHHHHHHSSCCCSSSCTTTTHHHHHHHHHHHSCSSCCCCCC-CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHhcCCCCCchHhHHHHHHHHHhcCCCCcccccc-ccHHHHHHHHHHHhccHHHHHHHHHHHHHHH---H
Confidence            3446778888887654433 344566777778999998876543 3366778889999999999999988776654   3


Q ss_pred             cCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh----hhHHh----HHHHHHHhC-
Q 036633          230 KGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI----KHFFD----SLAALVKKR-  300 (550)
Q Consensus       230 ~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~----s~liG----~lt~al~~~-  300 (550)
                      .....  .+.+++|+||||||||++|++||..+..      ++.+++|+.+.+....    ...+|    .+...+... 
T Consensus       102 ~~~~~--~g~~vll~Gp~GtGKTtlar~ia~~l~~------~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~  173 (543)
T 3m6a_A          102 LTKSL--KGPILCLAGPPGVGKTSLAKSIAKSLGR------KFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAG  173 (543)
T ss_dssp             HSSSC--CSCEEEEESSSSSSHHHHHHHHHHHHTC------EEEEECCCC--------------------CHHHHHHTTC
T ss_pred             hcccC--CCCEEEEECCCCCCHHHHHHHHHHhcCC------CeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhh
Confidence            22222  2379999999999999999999999977      8999999887542211    12333    222233322 


Q ss_pred             -CCCeEEeccccccCHH----HHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHH
Q 036633          301 -PYSVVLFDKIEKANSS----ILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEV  373 (550)
Q Consensus       301 -p~~VlllDEIeka~~~----v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~  373 (550)
                       ..+|+|||||++++++    .++.|+++++++++..+.+.  +..+++.+++||+|||..                   
T Consensus       174 ~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~-------------------  234 (543)
T 3m6a_A          174 KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNL-------------------  234 (543)
T ss_dssp             SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSST-------------------
T ss_pred             ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcc-------------------
Confidence             3359999999999998    56999999998754435555  778899999999999974                   


Q ss_pred             hccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc--cccCCHHHHHHHHhcCcccCCCcccHH
Q 036633          374 TGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV--IVCPSTSALVHIASNAARKYGQNGEGL  451 (550)
Q Consensus       374 l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~--~l~~~~~a~~~L~~~~~~~~GaN~R~L  451 (550)
                        ..|+|+|++|| .+|.|.   +++.++...|+..++..  ..+...++.  .+.++++++.+|+. .|...| |+|.|
T Consensus       235 --~~l~~aL~~R~-~vi~~~---~~~~~e~~~Il~~~l~~--~~~~~~~~~~~~i~i~~~~l~~l~~-~~~~~~-~vR~L  304 (543)
T 3m6a_A          235 --ATIPGPLRDRM-EIINIA---GYTEIEKLEIVKDHLLP--KQIKEHGLKKSNLQLRDQAILDIIR-YYTREA-GVRSL  304 (543)
T ss_dssp             --TTSCHHHHHHE-EEEECC---CCCHHHHHHHHHHTHHH--HHHHHTTCCGGGCEECHHHHHHHHH-HHCCCS-SSHHH
T ss_pred             --ccCCHHHHhhc-ceeeeC---CCCHHHHHHHHHHHHHH--HHHHHcCCCcccccCCHHHHHHHHH-hCChhh-chhHH
Confidence              47899999999 589999   99999999999988733  222223321  46889999999887 332224 67999


Q ss_pred             HHHHcc--hhhHHHHHhhhhcCCCccccccchhhccc
Q 036633          452 KRWMDQ--RPSADHVIDKFLRDAGYNHQSKEETEDME  486 (550)
Q Consensus       452 ~~~i~~--~~la~~~l~~~~~~~~~~~i~~~~~~~~~  486 (550)
                      ++.|++  ...+..++.+   ..+...|+.+......
T Consensus       305 ~~~i~~~~~~aa~~~~~~---~~~~~~It~~~l~~~L  338 (543)
T 3m6a_A          305 ERQLAAICRKAAKAIVAE---ERKRITVTEKNLQDFI  338 (543)
T ss_dssp             HHHHHHHHHHHHHHHHTT---CCSCCEECTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc---CCcceecCHHHHHHHh
Confidence            999997  3333333332   2344556665554443

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.92  E-value=1e-24  Score=221.39  Aligned_cols=256  Identities=18%  Similarity=0.163  Sum_probs=184.0

Q ss_pred             HHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC----cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633          198 MRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS----RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI  273 (550)
Q Consensus       198 ~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~----~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li  273 (550)
                      ..+...|.+.|+||+.+++.+..++.... .+.++..    ...|.+++|+||||||||++|+++|+.+..      +++
T Consensus         7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~------~~~   79 (310)
T 1ofh_A            7 REIVSELDQHIIGQADAKRAVAIALRNRW-RRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA------PFI   79 (310)
T ss_dssp             HHHHHHHHTTCCSCHHHHHHHHHHHHHHH-HTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC------CEE
T ss_pred             HHHHHHHhhhcCChHHHHHHHHHHHHHHH-hhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC------CEE
Confidence            46778889999999999999998887620 0223321    123479999999999999999999999866      899


Q ss_pred             EEecCCCCchhhhh----hHHhHHHH----HHHh-CCCCeEEeccccccCHHH------------HHHHHHhhhhccccc
Q 036633          274 HFDMGNYTELESIK----HFFDSLAA----LVKK-RPYSVVLFDKIEKANSSI------------LNLLLKILKTDFNRK  332 (550)
Q Consensus       274 ~id~s~~~~~~~~s----~liG~lt~----al~~-~p~~VlllDEIeka~~~v------------~~~Ll~~ld~g~~~~  332 (550)
                      .++|+.+.+...+.    ..+..+..    .+.. .+++||||||+++++++.            ++.|+++++++  . 
T Consensus        80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~--~-  156 (310)
T 1ofh_A           80 KVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS--T-  156 (310)
T ss_dssp             EEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCC--E-
T ss_pred             EEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCC--e-
Confidence            99999886532211    11111111    1111 235899999999998764            99999999988  5 


Q ss_pred             cccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH----
Q 036633          333 ATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE----  408 (550)
Q Consensus       333 l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~----  408 (550)
                      +......++..+++||+|+|.....                 ...|+|+|++||+.+|.|.   |++.+++..|+.    
T Consensus       157 ~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~l~~~l~~R~~~~i~~~---~~~~~~~~~il~~~~~  216 (310)
T 1ofh_A          157 VSTKHGMVKTDHILFIASGAFQVAR-----------------PSDLIPELQGRLPIRVELT---ALSAADFERILTEPHA  216 (310)
T ss_dssp             EEETTEEEECTTCEEEEEECCSSSC-----------------GGGSCHHHHHTCCEEEECC---CCCHHHHHHHHHSSTT
T ss_pred             EecccccccCCcEEEEEcCCcccCC-----------------cccCCHHHHhhCCceEEcC---CcCHHHHHHHHHhhHH
Confidence            5555225677889999997643211                 1468899999998789999   999999999998    


Q ss_pred             HHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc-----cCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhh
Q 036633          409 WACEETKRRNNDSKAVIVCPSTSALVHIASNAAR-----KYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETE  483 (550)
Q Consensus       409 ~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~-----~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~  483 (550)
                      ..+..+...+...+. .+.++++++++|+.++|+     ..| |+|.+.+++++ .+....+......+..+.|+.+...
T Consensus       217 ~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~~~~~~~~~~~~g-~~R~l~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~v~  293 (310)
T 1ofh_A          217 SLTEQYKALMATEGV-NIAFTTDAVKKIAEAAFRVNEKTENI-GARRLHTVMER-LMDKISFSASDMNGQTVNIDAAYVA  293 (310)
T ss_dssp             CHHHHHHHHHHHTTC-EEEECHHHHHHHHHHHHHHHHHSCCC-TTHHHHHHHHH-HSHHHHHHGGGCTTCEEEECHHHHH
T ss_pred             HHHHHHHHHHHhcCC-eeccCHHHHHHHHHHhhhhccccccc-CcHHHHHHHHH-HHHhhhcCCccccCCEEEEeeHHHH
Confidence            455555555555677 789999999999998873     146 77999999997 4444444443334444556666555


Q ss_pred             ccc
Q 036633          484 DME  486 (550)
Q Consensus       484 ~~~  486 (550)
                      ...
T Consensus       294 ~~l  296 (310)
T 1ofh_A          294 DAL  296 (310)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            443

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.91  E-value=1.2e-23  Score=209.80  Aligned_cols=213  Identities=15%  Similarity=0.174  Sum_probs=162.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      +.++|++.++..+...+...   .      ..+.+++|+||||||||++|+++++.+..   ...+++.+||+.+.....
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~---~------~~~~~vll~G~~GtGKt~la~~i~~~~~~---~~~~~~~v~~~~~~~~~~   73 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHL---A------PLDKPVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAALNENLL   73 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHH---T------TSCSCEEEECCTTSCHHHHHHHHHHTSTT---TTSCEEEEEGGGSCHHHH
T ss_pred             ccceeCCHHHHHHHHHHHHH---h------CCCCCEEEECCCCCcHHHHHHHHHHhcCc---cCCCeEEEecCCCChhHH
Confidence            34789999999998888765   1      12368999999999999999999999876   667999999999987666


Q ss_pred             hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633          286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~  353 (550)
                      .+.++|    .++++       +....+++||||||+.+++++|+.|+++++++  . +... +......++.||+|||.
T Consensus        74 ~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~--~-~~~~g~~~~~~~~~~iI~atn~  150 (265)
T 2bjv_A           74 DSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYG--E-LERVGGSQPLQVNVRLVCATNA  150 (265)
T ss_dssp             HHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHC--E-ECCCCC--CEECCCEEEEEESS
T ss_pred             HHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhC--C-eecCCCcccccCCeEEEEecCc
Confidence            667776    23332       23345689999999999999999999999999  6 5544 33333456779999998


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc-eeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCcc--ccC
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK-LVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVI--VCP  428 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~-ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~--l~~  428 (550)
                      +......              ...|+++|++|++. .|.++   ||+.  +++..++..++.......   +. .  ..+
T Consensus       151 ~~~~~~~--------------~~~~~~~L~~Rl~~~~i~lp---~L~~R~~di~~l~~~~l~~~~~~~---~~-~~~~~~  209 (265)
T 2bjv_A          151 DLPAMVN--------------EGTFRADLLDALAFDVVQLP---PLRERESDIMLMAEYFAIQMCREI---KL-PLFPGF  209 (265)
T ss_dssp             CHHHHHH--------------HTSSCHHHHHHHCSEEEECC---CGGGCHHHHHHHHHHHHHHHHHHT---TC-SSCCCB
T ss_pred             CHHHHHH--------------cCCccHHHHHhhcCcEEeCC---ChhhhhHHHHHHHHHHHHHHHHHh---CC-CcccCc
Confidence            7544432              35799999999953 35555   8876  899999999988766653   33 3  378


Q ss_pred             CHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          429 STSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       429 ~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +++++++|..++||  | |+|.|++++++
T Consensus       210 ~~~a~~~L~~~~~~--g-n~reL~~~l~~  235 (265)
T 2bjv_A          210 TERARETLLNYRWP--G-NIRELKNVVER  235 (265)
T ss_dssp             CHHHHHHHHHSCCT--T-HHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCCC--C-CHHHHHHHHHH
Confidence            99999999998885  7 99999999996

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.91  E-value=1.3e-23  Score=221.55  Aligned_cols=215  Identities=15%  Similarity=0.152  Sum_probs=176.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|++.++..+...+.+.   .      ....+++++|++|||||.+|++|+....+   ...+|+.+||+.+.+...
T Consensus       137 ~~~ig~s~~m~~l~~~i~~~---a------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r---~~~~fv~v~~~~~~~~~~  204 (387)
T 1ny5_A          137 EEYVFESPKMKEILEKIKKI---S------CAECPVLITGESGVGKEVVARLIHKLSDR---SKEPFVALNVASIPRDIF  204 (387)
T ss_dssp             CCCCCCSHHHHHHHHHHHHH---T------TCCSCEEEECSTTSSHHHHHHHHHHHSTT---TTSCEEEEETTTSCHHHH
T ss_pred             hhhhhccHHhhHHHHHHHHh---c------CCCCCeEEecCCCcCHHHHHHHHHHhcCC---CCCCeEEEecCCCCHHHH
Confidence            46899999999999888865   1      11257799999999999999999999887   788999999999999888


Q ss_pred             hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633          286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~  353 (550)
                      .+.|||    .+|++       +....+++||||||+.+++++|..|++++++|  . ++.. |......++.||+|||.
T Consensus       205 ~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~--~-~~~~g~~~~~~~~~rii~at~~  281 (387)
T 1ny5_A          205 EAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESG--K-FYRLGGRKEIEVNVRILAATNR  281 (387)
T ss_dssp             HHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHS--E-ECCBTCCSBEECCCEEEEEESS
T ss_pred             HHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcC--c-EEeCCCCceeeccEEEEEeCCC
Confidence            899998    44443       33345689999999999999999999999999  6 5544 44444456669999999


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      +......              .+.|+++|++|++ ++.+. .|||.+  +|+..++..++.++..++...   ...++++
T Consensus       282 ~l~~~~~--------------~g~fr~dl~~rl~-~~~i~-lPpLreR~~Di~~l~~~~l~~~~~~~~~~---~~~~~~~  342 (387)
T 1ny5_A          282 NIKELVK--------------EGKFREDLYYRLG-VIEIE-IPPLRERKEDIIPLANHFLKKFSRKYAKE---VEGFTKS  342 (387)
T ss_dssp             CHHHHHH--------------TTSSCHHHHHHHT-TEEEE-CCCGGGCHHHHHHHHHHHHHHHHHHTTCC---CCEECHH
T ss_pred             CHHHHHH--------------cCCccHHHHHhhc-CCeec-CCcchhccccHHHHHHHHHHHHHHHcCCC---CCCCCHH
Confidence            8766554              5789999999995 44454 338865  999999999999888775443   2368999


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +++.|..+.||  | |+|+|+++|++
T Consensus       343 a~~~l~~~~wp--G-NvreL~~~i~~  365 (387)
T 1ny5_A          343 AQELLLSYPWY--G-NVRELKNVIER  365 (387)
T ss_dssp             HHHHHHHSCCT--T-HHHHHHHHHHH
T ss_pred             HHHHHHhCCCC--c-HHHHHHHHHHH
Confidence            99999999887  8 99999999997

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.90  E-value=1.8e-23  Score=218.98  Aligned_cols=214  Identities=16%  Similarity=0.191  Sum_probs=173.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|++.++..+...+.+.   .      ....++++.|++||||+.+|++++....+   .. +|+.+||+.+++...
T Consensus       129 ~~~ig~s~~~~~~~~~~~~~---a------~~~~~vli~GesGtGKe~lAr~ih~~s~r---~~-~fv~vnc~~~~~~~~  195 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPKI---A------KSKAPVLITGESGTGKEIVARLIHRYSGR---KG-AFVDLNCASIPQELA  195 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHHH---H------TSCSCEEEECCTTSSHHHHHHHHHHHHCC---CS-CEEEEESSSSCTTTH
T ss_pred             ccccccchHHHHHHhhhhhh---h------ccchhheEEeCCCchHHHHHHHHHHhccc---cC-CcEEEEcccCChHHH
Confidence            46899999999988888765   1      12257899999999999999999998876   43 499999999999999


Q ss_pred             hhhHHh----HHHHH-------HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC
Q 036633          286 IKHFFD----SLAAL-------VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG----~lt~a-------l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~  353 (550)
                      .+.|||    .+|++       +....+++||||||+.+++++|..|++++++|  . ++.. +......++.+|+|||.
T Consensus       196 ~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~--~-~~~~g~~~~~~~~~rii~at~~  272 (368)
T 3dzd_A          196 ESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETG--S-FTRLGGNQKIEVDIRVISATNK  272 (368)
T ss_dssp             HHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHS--E-ECCBTCCCBEECCCEEEEEESS
T ss_pred             HHHhcCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhC--C-cccCCCCcceeeeeEEEEecCC
Confidence            999998    44443       33445689999999999999999999999999  6 5543 33333345569999998


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH--HHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD--TTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~--e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      +......              .+.|+++|++|+. ++.+. .|||.+  +|+..++.+++.++..++...   ...++++
T Consensus       273 ~l~~~v~--------------~g~fr~dL~~rl~-~~~i~-lPpLreR~~Di~~l~~~~l~~~~~~~~~~---~~~~~~~  333 (368)
T 3dzd_A          273 NLEEEIK--------------KGNFREDLYYRLS-VFQIY-LPPLRERGKDVILLAEYFLKKFAKEYKKN---CFELSEE  333 (368)
T ss_dssp             CHHHHHH--------------TTSSCHHHHHHHT-SEEEE-CCCGGGSTTHHHHHHHHHHHHHHHHTTCC---CCCBCHH
T ss_pred             CHHHHHH--------------cCCccHHHHHHhC-CeEEe-CCChhhchhhHHHHHHHHHHHHHHHcCCC---CCCcCHH
Confidence            7665544              5789999999995 54444 239987  999999999999988876544   3579999


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++++|..+.||  | |+|+|+++|++
T Consensus       334 a~~~L~~~~wp--G-NvreL~n~i~~  356 (368)
T 3dzd_A          334 TKEYLMKQEWK--G-NVRELKNLIER  356 (368)
T ss_dssp             HHHHHHTCCCT--T-HHHHHHHHHHH
T ss_pred             HHHHHHhCCCC--c-HHHHHHHHHHH
Confidence            99999999887  8 99999999997

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.88  E-value=6.6e-22  Score=210.07  Aligned_cols=227  Identities=20%  Similarity=0.226  Sum_probs=165.2

Q ss_pred             HHHhhhhcCcccCcHHHHHHHHHHHhcchhhhc----CCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633          198 MRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKK----GLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI  273 (550)
Q Consensus       198 ~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~----gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li  273 (550)
                      ..+...|.+.|+||++|++.+..++.... .+.    ++.....|.++||+||||||||++|++||+.+..      +|+
T Consensus         7 ~~i~~~Ld~~IvGqe~ak~~l~~av~~~~-~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~------~~~   79 (444)
T 1g41_A            7 REIVSELDQHIIGQADAKRAVAIALRNRW-RRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA------PFI   79 (444)
T ss_dssp             HHHHHHHHTTCCSCHHHHHHHHHHHHHHH-HHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC------CEE
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC------Cce
Confidence            35677889999999999999998885420 011    2211223478999999999999999999999977      999


Q ss_pred             EEecCCCCchhh--------hhhHHh------------------------------------------------------
Q 036633          274 HFDMGNYTELES--------IKHFFD------------------------------------------------------  291 (550)
Q Consensus       274 ~id~s~~~~~~~--------~s~liG------------------------------------------------------  291 (550)
                      .+|++.+.+...        +..++.                                                      
T Consensus        80 ~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~l  159 (444)
T 1g41_A           80 KVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAF  159 (444)
T ss_dssp             EEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC---------------------------------------
T ss_pred             eecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHH
Confidence            999987655211        111100                                                      


Q ss_pred             --------------------------------------------------------------------------------
Q 036633          292 --------------------------------------------------------------------------------  291 (550)
Q Consensus       292 --------------------------------------------------------------------------------  291 (550)
                                                                                                      
T Consensus       160 d~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~  239 (444)
T 1g41_A          160 RKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEE  239 (444)
T ss_dssp             ------------------------------------------------------------------CCGGGSCSSCCHHH
T ss_pred             HHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHH
Confidence                                                                                            


Q ss_pred             HHHHHHHhC-CCCeEEeccccccCH------------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHH
Q 036633          292 SLAALVKKR-PYSVVLFDKIEKANS------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQV  358 (550)
Q Consensus       292 ~lt~al~~~-p~~VlllDEIeka~~------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~  358 (550)
                      ...+++.+. +.+++++|||+|+..            .||+.||+++|..  . ....-..+|.+|++||+|....... 
T Consensus       240 ~~~~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~--~-~~~~~~~~d~~~ilfI~~gaf~~~~-  315 (444)
T 1g41_A          240 LKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS--T-VSTKHGMVKTDHILFIASGAFQVAR-  315 (444)
T ss_dssp             HHHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCC--E-EEETTEEEECTTCEEEEEECCSSCC-
T ss_pred             HHHHHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccc--c-cccccceecCCcEEEEeccccccCC-
Confidence            001122232 567999999999863            3899999999987  3 2223357899999999997432110 


Q ss_pred             HHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH---H-HHHHHHHHhccCCCccccCCHHHHH
Q 036633          359 YEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE---W-ACEETKRRNNDSKAVIVCPSTSALV  434 (550)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~---~-~l~~~~~~l~~~~~~~l~~~~~a~~  434 (550)
                                      ...+.|+|++|++.+|.|.   +|+.+++..|+.   . .+.++...+...|+ .+.|+++++.
T Consensus       316 ----------------~~dlipel~~R~~i~i~l~---~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~-~l~~~~~al~  375 (444)
T 1g41_A          316 ----------------PSDLIPELQGRLPIRVELT---ALSAADFERILTEPHASLTEQYKALMATEGV-NIAFTTDAVK  375 (444)
T ss_dssp             ----------------GGGSCHHHHTTCCEEEECC---CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTC-EEEECHHHHH
T ss_pred             ----------------hhhcchHHhcccceeeeCC---CCCHHHHHHHHHHHHHhHHHHHHHHhcccCc-eEEECHHHHH
Confidence                            0125699999998889999   999999999993   3 44555566666788 9999999999


Q ss_pred             HHHhcC-----c-ccCCCcccHHHHHHcc
Q 036633          435 HIASNA-----A-RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       435 ~L~~~~-----~-~~~GaN~R~L~~~i~~  457 (550)
                      +|++.+     | .+.||  |.|++.|++
T Consensus       376 ~i~~~a~~~~~~t~~~Ga--R~L~~~ie~  402 (444)
T 1g41_A          376 KIAEAAFRVNEKTENIGA--RRLHTVMER  402 (444)
T ss_dssp             HHHHHHHHHHHHSCCCGG--GHHHHHHHH
T ss_pred             HHHHHHHHhccCCccCCc--hHHHHHHHH
Confidence            999853     3 56788  999999997

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.87  E-value=6.8e-22  Score=201.06  Aligned_cols=218  Identities=14%  Similarity=0.169  Sum_probs=161.0

Q ss_pred             HHHHHhhhhcCcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCCC
Q 036633          196 RYMRVQGRLKKRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DNDN  270 (550)
Q Consensus       196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~  270 (550)
                      .+..+...|.+.++||+.+++.+...+.....    .+.|+..+..+.++||+||||||||++|+++|+.+...+ ....
T Consensus        21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~  100 (309)
T 3syl_A           21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKG  100 (309)
T ss_dssp             THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSC
T ss_pred             cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCC
Confidence            35667777888899999999999877654310    134555443338999999999999999999999986521 1244


Q ss_pred             ceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccCCeEee
Q 036633          271 HLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRGIAAFD  341 (550)
Q Consensus       271 ~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd  341 (550)
                      +++.++++.+..... ....+.+.+.+....++||||||++.+         ++.+++.|+++++++  .          
T Consensus       101 ~~~~~~~~~l~~~~~-g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~--~----------  167 (309)
T 3syl_A          101 HLVSVTRDDLVGQYI-GHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN--R----------  167 (309)
T ss_dssp             CEEEECGGGTCCSST-TCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC--T----------
T ss_pred             cEEEEcHHHhhhhcc-cccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC--C----------
Confidence            899999887743211 001113344444445689999999966         899999999999988  5          


Q ss_pred             cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                       .+++||+|+|......                ....+|+|.+|++.+|.|.   |++.+++..|+..++..       .
T Consensus       168 -~~~~~i~~~~~~~~~~----------------~~~~~~~l~~R~~~~i~~~---~~~~~~~~~il~~~l~~-------~  220 (309)
T 3syl_A          168 -DDLVVILAGYADRMEN----------------FFQSNPGFRSRIAHHIEFP---DYSDEELFEIAGHMLDD-------Q  220 (309)
T ss_dssp             -TTCEEEEEECHHHHHH----------------HHHHSTTHHHHEEEEEEEC---CCCHHHHHHHHHHHHHH-------T
T ss_pred             -CCEEEEEeCChHHHHH----------------HHhhCHHHHHhCCeEEEcC---CcCHHHHHHHHHHHHHH-------c
Confidence             5678999988532110                0013589999999999999   99999999999998865       4


Q ss_pred             CCccccCCHHHHHHHHhcC----c-ccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSALVHIASNA----A-RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a~~~L~~~~----~-~~~GaN~R~L~~~i~~  457 (550)
                      +   +.++++++++++.+.    . +.+| |+|.+++++++
T Consensus       221 ~---~~~~~~~~~~l~~~~~~~~~~~~~g-n~r~l~~~l~~  257 (309)
T 3syl_A          221 N---YQMTPEAETALRAYIGLRRNQPHFA-NARSIRNALDR  257 (309)
T ss_dssp             T---CEECHHHHHHHHHHHHHHTTSSSCC-HHHHHHHHHHH
T ss_pred             C---CCCCHHHHHHHHHHHHHhccCCCCC-cHHHHHHHHHH
Confidence            3   478999999998751    1 3457 89999999997

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.83  E-value=2e-20  Score=200.41  Aligned_cols=230  Identities=14%  Similarity=0.130  Sum_probs=159.0

Q ss_pred             CcccCcHHHH---HHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633          206 KRVFGQNDAI---DVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE  282 (550)
Q Consensus       206 ~~viGQ~~ai---~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~  282 (550)
                      ..++||++++   ..+...+...           ++.+++|+||||||||++|++||+.+..      +|+.+++.....
T Consensus        26 ~~ivGq~~~~~~~~~L~~~i~~~-----------~~~~vLL~GppGtGKTtlAr~ia~~~~~------~f~~l~a~~~~~   88 (447)
T 3pvs_A           26 AQYIGQQHLLAAGKPLPRAIEAG-----------HLHSMILWGPPGTGKTTLAEVIARYANA------DVERISAVTSGV   88 (447)
T ss_dssp             TTCCSCHHHHSTTSHHHHHHHHT-----------CCCEEEEECSTTSSHHHHHHHHHHHTTC------EEEEEETTTCCH
T ss_pred             HHhCCcHHHHhchHHHHHHHHcC-----------CCcEEEEECCCCCcHHHHHHHHHHHhCC------CeEEEEeccCCH
Confidence            5699999999   7777777755           3368999999999999999999999876      899999765431


Q ss_pred             hhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633          283 LESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM  362 (550)
Q Consensus       283 ~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~  362 (550)
                       ..+...+...........++|||||||+.++++.|+.|++.+++|  .             +++|++|+...       
T Consensus        89 -~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~-------------v~lI~att~n~-------  145 (447)
T 3pvs_A           89 -KEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--T-------------ITFIGATTENP-------  145 (447)
T ss_dssp             -HHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT--S-------------CEEEEEESSCG-------
T ss_pred             -HHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--c-------------eEEEecCCCCc-------
Confidence             122222222222222345689999999999999999999999998  4             23555554321       


Q ss_pred             hhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc
Q 036633          363 LTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAAR  442 (550)
Q Consensus       363 ~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~  442 (550)
                                  ...|++++++|+ .++.|.   |++.+++..++...+......+..  . .+.++++++++|+.. ++
T Consensus       146 ------------~~~l~~aL~sR~-~v~~l~---~l~~edi~~il~~~l~~~~~~~~~--~-~~~i~~~al~~L~~~-~~  205 (447)
T 3pvs_A          146 ------------SFELNSALLSRA-RVYLLK---SLSTEDIEQVLTQAMEDKTRGYGG--Q-DIVLPDETRRAIAEL-VN  205 (447)
T ss_dssp             ------------GGSSCHHHHTTE-EEEECC---CCCHHHHHHHHHHHHHCTTTSSTT--S-SEECCHHHHHHHHHH-HC
T ss_pred             ------------ccccCHHHhCce-eEEeeC---CcCHHHHHHHHHHHHHHHhhhhcc--c-cCcCCHHHHHHHHHH-CC
Confidence                        136789999999 588999   999999999999988653322211  2 568999999999986 32


Q ss_pred             cCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchhhccccccccCCCCCCCccccc
Q 036633          443 KYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETEDMEESTELGGGGGGGVEYWW  503 (550)
Q Consensus       443 ~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~~~~~~~~~l~~dk~g~~~y~~  503 (550)
                        | |+|.+.+.++. ...    .......+...|+.+............+|+.|+.+|+.
T Consensus       206 --G-d~R~lln~Le~-a~~----~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~  258 (447)
T 3pvs_A          206 --G-DARRALNTLEM-MAD----MAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDL  258 (447)
T ss_dssp             --S-CHHHHHHHHHH-HHH----HSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHH
T ss_pred             --C-CHHHHHHHHHH-HHH----hcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHH
Confidence              6 88999999986 111    11111123456788888888777778889988888754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.81  E-value=3.3e-19  Score=183.72  Aligned_cols=193  Identities=18%  Similarity=0.207  Sum_probs=151.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ..++|++.++..+...+...   ..    +..+ .++||+||||||||++|+++|+.+..      +|+.++|+.+... 
T Consensus        29 ~~iiG~~~~~~~l~~~l~~~---~~----~~~~~~~vll~G~~GtGKT~la~~ia~~~~~------~~~~~~~~~~~~~-   94 (338)
T 3pfi_A           29 DGYIGQESIKKNLNVFIAAA---KK----RNECLDHILFSGPAGLGKTTLANIISYEMSA------NIKTTAAPMIEKS-   94 (338)
T ss_dssp             GGCCSCHHHHHHHHHHHHHH---HH----TTSCCCCEEEECSTTSSHHHHHHHHHHHTTC------CEEEEEGGGCCSH-
T ss_pred             HHhCChHHHHHHHHHHHHHH---Hh----cCCCCCeEEEECcCCCCHHHHHHHHHHHhCC------CeEEecchhccch-
Confidence            46899999999999888865   21    1233 78999999999999999999999877      8999999877532 


Q ss_pred             hhhhHHhHHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhhccccccccC------CeEeecCCeEEEEeCCCChHH
Q 036633          285 SIKHFFDSLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG------IAAFDLTNTLIIMTSDLKDEQ  357 (550)
Q Consensus       285 ~~s~liG~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~------g~~vd~~~~iiI~TsN~g~~~  357 (550)
                            |.+...+.. ..++|||||||+.+++++++.|+++++++.+. +..+      ...++..++++|++||..   
T Consensus        95 ------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~atn~~---  164 (338)
T 3pfi_A           95 ------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLD-IIIGSGPAAQTIKIDLPKFTLIGATTRA---  164 (338)
T ss_dssp             ------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC----------CCCCCCCCCCCEEEEEESCG---
T ss_pred             ------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccch-hhcccCccccceecCCCCeEEEEeCCCc---
Confidence                  233444443 45689999999999999999999999998322 2111      123455578899999962   


Q ss_pred             HHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHH
Q 036633          358 VYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIA  437 (550)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~  437 (550)
                                        ..|+|+|++|++.++.|.   +++.+++..++...+..       .++   .+++++++.|+
T Consensus       165 ------------------~~l~~~L~~R~~~~i~l~---~~~~~e~~~il~~~~~~-------~~~---~~~~~~~~~l~  213 (338)
T 3pfi_A          165 ------------------GMLSNPLRDRFGMQFRLE---FYKDSELALILQKAALK-------LNK---TCEEKAALEIA  213 (338)
T ss_dssp             ------------------GGSCHHHHTTCSEEEECC---CCCHHHHHHHHHHHHHH-------TTC---EECHHHHHHHH
T ss_pred             ------------------cccCHHHHhhcCEEeeCC---CcCHHHHHHHHHHHHHh-------cCC---CCCHHHHHHHH
Confidence                              468999999999899999   99999999998877643       334   78999999999


Q ss_pred             hcCcccCCCcccHHHHHHcc
Q 036633          438 SNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       438 ~~~~~~~GaN~R~L~~~i~~  457 (550)
                      . .|+  | |.|.+.+.+++
T Consensus       214 ~-~~~--G-~~r~l~~~l~~  229 (338)
T 3pfi_A          214 K-RSR--S-TPRIALRLLKR  229 (338)
T ss_dssp             H-TTT--T-CHHHHHHHHHH
T ss_pred             H-HHC--c-CHHHHHHHHHH
Confidence            8 443  6 88999999986

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.79  E-value=1.9e-18  Score=176.53  Aligned_cols=196  Identities=17%  Similarity=0.129  Sum_probs=148.9

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|++.++..+...+...   ..+   ...+.+++|+||||||||++|+++|+.+..      +++.++|+.+...  
T Consensus        12 ~~~ig~~~~~~~l~~~l~~~---~~~---~~~~~~vll~G~~GtGKT~la~~i~~~~~~------~~~~~~~~~~~~~--   77 (324)
T 1hqc_A           12 DEYIGQERLKQKLRVYLEAA---KAR---KEPLEHLLLFGPPGLGKTTLAHVIAHELGV------NLRVTSGPAIEKP--   77 (324)
T ss_dssp             TTCCSCHHHHHHHHHHHHHH---HHH---CSCCCCCEEECCTTCCCHHHHHHHHHHHTC------CEEEECTTTCCSH--
T ss_pred             HHhhCHHHHHHHHHHHHHHH---Hcc---CCCCCcEEEECCCCCCHHHHHHHHHHHhCC------CEEEEeccccCCh--
Confidence            56899999999998888764   211   112378999999999999999999999876      8999999887542  


Q ss_pred             hhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC------CeEeecCCeEEEEeCCCChHHHH
Q 036633          286 IKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG------IAAFDLTNTLIIMTSDLKDEQVY  359 (550)
Q Consensus       286 ~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~------g~~vd~~~~iiI~TsN~g~~~~~  359 (550)
                       +.+.+.+..+  ....++||||||+.+++..++.|+++++++.+. +..+      .......++++|+|||..     
T Consensus        78 -~~l~~~l~~~--~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~-~v~~~~~~~~~~~~~~~~~~~i~~t~~~-----  148 (324)
T 1hqc_A           78 -GDLAAILANS--LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMD-IVIGQGPAARTIRLELPRFTLIGATTRP-----  148 (324)
T ss_dssp             -HHHHHHHTTT--CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEE-ECCSSSSSCCCEEEECCCCEEEEEESCC-----
T ss_pred             -HHHHHHHHHh--ccCCCEEEEECCcccccchHHHHHHHHHhhhhH-HhccccccccccccCCCCEEEEEeCCCc-----
Confidence             2333333221  145589999999999999999999999988322 1111      122344578899999864     


Q ss_pred             HhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633          360 EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN  439 (550)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~  439 (550)
                                      ..|+++|++|++.++.|.   +++.+++..++...+..       .+.   .+++++++.|+.+
T Consensus       149 ----------------~~~~~~l~~R~~~~i~l~---~~~~~e~~~~l~~~~~~-------~~~---~~~~~~~~~l~~~  199 (324)
T 1hqc_A          149 ----------------GLITAPLLSRFGIVEHLE---YYTPEELAQGVMRDARL-------LGV---RITEEAALEIGRR  199 (324)
T ss_dssp             ----------------SSCSCSTTTTCSCEEECC---CCCHHHHHHHHHHHHHT-------TTC---CCCHHHHHHHHHH
T ss_pred             ----------------ccCCHHHHhcccEEEecC---CCCHHHHHHHHHHHHHh-------cCC---CCCHHHHHHHHHH
Confidence                            478899999998799999   99999998887776632       344   7899999999986


Q ss_pred             CcccCCCcccHHHHHHcc
Q 036633          440 AARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       440 ~~~~~GaN~R~L~~~i~~  457 (550)
                      + +  | |.|.+.+.++.
T Consensus       200 ~-~--G-~~r~l~~~l~~  213 (324)
T 1hqc_A          200 S-R--G-TMRVAKRLFRR  213 (324)
T ss_dssp             S-C--S-CHHHHHHHHHH
T ss_pred             c-c--C-CHHHHHHHHHH
Confidence            4 2  7 88999888876

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.78  E-value=3.4e-18  Score=175.21  Aligned_cols=187  Identities=10%  Similarity=0.119  Sum_probs=148.9

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++||++++..+..++...          ..|..+||.||||||||++|+++++.+..      +++.+|++...    
T Consensus        26 ~~ivg~~~~~~~l~~~l~~~----------~~~~~~L~~G~~G~GKT~la~~la~~l~~------~~~~i~~~~~~----   85 (324)
T 3u61_B           26 DECILPAFDKETFKSITSKG----------KIPHIILHSPSPGTGKTTVAKALCHDVNA------DMMFVNGSDCK----   85 (324)
T ss_dssp             TTSCCCHHHHHHHHHHHHTT----------CCCSEEEECSSTTSSHHHHHHHHHHHTTE------EEEEEETTTCC----
T ss_pred             HHHhCcHHHHHHHHHHHHcC----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCC------CEEEEcccccC----
Confidence            56899999999988888755          13368899999999999999999999977      89999998865    


Q ss_pred             hhhHHhHHHHHHHhC----CCCeEEeccccccC-HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          286 IKHFFDSLAALVKKR----PYSVVLFDKIEKAN-SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       286 ~s~liG~lt~al~~~----p~~VlllDEIeka~-~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      ...+...+.+.....    .+.||+|||++.++ ++.++.|++++++.  .           .++.||+|||..      
T Consensus        86 ~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~--~-----------~~~~iI~~~n~~------  146 (324)
T 3u61_B           86 IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY--S-----------SNCSIIITANNI------  146 (324)
T ss_dssp             HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH--G-----------GGCEEEEEESSG------
T ss_pred             HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC--C-----------CCcEEEEEeCCc------
Confidence            222222333333332    45799999999999 99999999999986  4           456789999963      


Q ss_pred             hhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCH-HHHHHHHhc
Q 036633          361 VMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPST-SALVHIASN  439 (550)
Q Consensus       361 ~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~-~a~~~L~~~  439 (550)
                                     ..+.+++.+|| .++.|.   +++.+++..|+...+..+...+...++   .+++ +++++|+..
T Consensus       147 ---------------~~l~~~l~sR~-~~i~~~---~~~~~e~~~il~~~~~~l~~~~~~~~~---~~~~~~~~~~l~~~  204 (324)
T 3u61_B          147 ---------------DGIIKPLQSRC-RVITFG---QPTDEDKIEMMKQMIRRLTEICKHEGI---AIADMKVVAALVKK  204 (324)
T ss_dssp             ---------------GGSCTTHHHHS-EEEECC---CCCHHHHHHHHHHHHHHHHHHHHHHTC---CBSCHHHHHHHHHH
T ss_pred             ---------------cccCHHHHhhC-cEEEeC---CCCHHHHHHHHHHHHHHHHHHHHHcCC---CCCcHHHHHHHHHh
Confidence                           35789999999 689999   999999999988888777776666665   7787 999999986


Q ss_pred             CcccCCCcccHHHHHHcc
Q 036633          440 AARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       440 ~~~~~GaN~R~L~~~i~~  457 (550)
                      +.   | |.|.+.+.++.
T Consensus       205 ~~---g-d~R~a~~~L~~  218 (324)
T 3u61_B          205 NF---P-DFRKTIGELDS  218 (324)
T ss_dssp             TC---S-CTTHHHHHHHH
T ss_pred             CC---C-CHHHHHHHHHH
Confidence            42   5 78987777774

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.77  E-value=8.5e-18  Score=172.60  Aligned_cols=199  Identities=17%  Similarity=0.221  Sum_probs=144.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ..|+|++.+++.+..++........-+.....| ..+||+||||||||++|+++|+.+..      +|+.++++++....
T Consensus        18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~------~~~~v~~~~l~~~~   91 (322)
T 3eie_A           18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS------TFFSVSSSDLVSKW   91 (322)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC------EEEEEEHHHHHTTT
T ss_pred             HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC------CEEEEchHHHhhcc
Confidence            468999999999998885331101111122345 78999999999999999999999877      99999997753221


Q ss_pred             --hhhhHHhHHHHHHHhCCCCeEEeccccccCH-----------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633          285 --SIKHFFDSLAALVKKRPYSVVLFDKIEKANS-----------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS  351 (550)
Q Consensus       285 --~~s~liG~lt~al~~~p~~VlllDEIeka~~-----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts  351 (550)
                        .....+..+....+....+|||||||+.+.+           .+++.|+..++.-  .  .      ...+++||+||
T Consensus        92 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~--~--~------~~~~v~vi~at  161 (322)
T 3eie_A           92 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV--G--N------DSQGVLVLGAT  161 (322)
T ss_dssp             GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGG--G--T------SCCCEEEEEEE
T ss_pred             cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccc--c--c------cCCceEEEEec
Confidence              1112222333334445558999999998754           5678888888643  1  1      11467899999


Q ss_pred             CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      |..                     ..++|++++||+..+.|.   +++.++...|+...+.       ..   ...+++.
T Consensus       162 n~~---------------------~~ld~al~~Rf~~~i~~~---~p~~~~r~~il~~~~~-------~~---~~~~~~~  207 (322)
T 3eie_A          162 NIP---------------------WQLDSAIRRRFERRIYIP---LPDLAARTTMFEINVG-------DT---PCVLTKE  207 (322)
T ss_dssp             SCG---------------------GGSCHHHHHHCCEEEECC---CCCHHHHHHHHHHHHT-------TC---CCCCCHH
T ss_pred             CCh---------------------hhCCHHHHcccCeEEEeC---CCCHHHHHHHHHHHhc-------cC---CCCCCHH
Confidence            964                     357899999999999999   8899999999988773       23   4467899


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .++.|+....   |.++++|+.+++.
T Consensus       208 ~l~~la~~t~---g~sg~di~~l~~~  230 (322)
T 3eie_A          208 DYRTLGAMTE---GYSGSDIAVVVKD  230 (322)
T ss_dssp             HHHHHHHTTT---TCCHHHHHHHHHH
T ss_pred             HHHHHHHHcC---CCCHHHHHHHHHH
Confidence            9999998654   4466999999987

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.76  E-value=2.5e-18  Score=155.91  Aligned_cols=144  Identities=10%  Similarity=0.069  Sum_probs=109.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      +.++|++.++..+...+...   .      ..+.+++|+||||||||++|++|+.....   ...+|+ +||+.+.+.  
T Consensus         1 ~~iiG~s~~~~~~~~~~~~~---a------~~~~~vll~G~~GtGKt~lA~~i~~~~~~---~~~~~v-~~~~~~~~~--   65 (145)
T 3n70_A            1 VELIGRSEWINQYRRRLQQL---S------ETDIAVWLYGAPGTGRMTGARYLHQFGRN---AQGEFV-YRELTPDNA--   65 (145)
T ss_dssp             ---CCSSHHHHHHHHHHHHH---T------TCCSCEEEESSTTSSHHHHHHHHHHSSTT---TTSCCE-EEECCTTTS--
T ss_pred             CCceeCCHHHHHHHHHHHHH---h------CCCCCEEEECCCCCCHHHHHHHHHHhCCc---cCCCEE-EECCCCCcc--
Confidence            35899999999999998865   1      12368999999999999999999998876   677999 999988765  


Q ss_pred             hhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhh
Q 036633          286 IKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTA  365 (550)
Q Consensus       286 ~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~  365 (550)
                       ....|.+..+    ..++||||||+.+++++|..|++++...  .           .++.+|+|||.+......     
T Consensus        66 -~~~~~~~~~a----~~g~l~ldei~~l~~~~q~~Ll~~l~~~--~-----------~~~~~I~~t~~~~~~~~~-----  122 (145)
T 3n70_A           66 -PQLNDFIALA----QGGTLVLSHPEHLTREQQYHLVQLQSQE--H-----------RPFRLIGIGDTSLVELAA-----  122 (145)
T ss_dssp             -SCHHHHHHHH----TTSCEEEECGGGSCHHHHHHHHHHHHSS--S-----------CSSCEEEEESSCHHHHHH-----
T ss_pred             -hhhhcHHHHc----CCcEEEEcChHHCCHHHHHHHHHHHhhc--C-----------CCEEEEEECCcCHHHHHH-----
Confidence             2233433332    4589999999999999999999999655  3           345589999987655433     


Q ss_pred             hHhhHHHHhccCCChhhhhhccce-eEecCCCCCC
Q 036633          366 TYGRVNEVTGSLFKPSLLKLLDKL-VVIDLAVPLL  399 (550)
Q Consensus       366 ~~~~~~~~l~~~f~p~ll~Rid~i-i~f~~~~pL~  399 (550)
                               ...|+++|++|+..+ |.++   ||.
T Consensus       123 ---------~~~~~~~L~~rl~~~~i~lP---pLR  145 (145)
T 3n70_A          123 ---------SNHIIAELYYCFAMTQIACL---PLT  145 (145)
T ss_dssp             ---------HSCCCHHHHHHHHHHEEECC---CCC
T ss_pred             ---------cCCCCHHHHHHhcCCEEeCC---CCC
Confidence                     368999999999533 4444   763

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.75  E-value=8.4e-18  Score=175.89  Aligned_cols=194  Identities=20%  Similarity=0.245  Sum_probs=136.4

Q ss_pred             cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      -+.|.|.+++++.+.+++...+.     .+.|+..   |..+||+||||||||++|+++|..+..      +|+.+++++
T Consensus       147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~---prGvLL~GPPGTGKTllAkAiA~e~~~------~f~~v~~s~  217 (405)
T 4b4t_J          147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ---PKGVILYGPPGTGKTLLARAVAHHTDC------KFIRVSGAE  217 (405)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC---CCCEEEESCSSSSHHHHHHHHHHHHTC------EEEEEEGGG
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC---CCceEEeCCCCCCHHHHHHHHHHhhCC------CceEEEhHH
Confidence            35689999999999988876321     1334422   368999999999999999999999988      999999998


Q ss_pred             CCchhh--hhhHHh-HHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeec
Q 036633          280 YTELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       280 ~~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      +.....  ..+.+- .|..+-...| +||||||||.+.+              .+.+.||..+|.-  .         ..
T Consensus       218 l~sk~vGese~~vr~lF~~Ar~~aP-~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--~---------~~  285 (405)
T 4b4t_J          218 LVQKYIGEGSRMVRELFVMAREHAP-SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF--E---------TS  285 (405)
T ss_dssp             GSCSSTTHHHHHHHHHHHHHHHTCS-EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT--T---------CC
T ss_pred             hhccccchHHHHHHHHHHHHHHhCC-ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc--C---------CC
Confidence            754321  112222 3333434455 8999999997632              2456666666532  1         11


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                      .+++||+|||..                     ..++|+|+.  |||..|.|.   +.+.++...|++.++.+       
T Consensus       286 ~~V~vIaATNrp---------------------d~LDpAllRpGRfD~~I~i~---lPd~~~R~~Il~~~~~~-------  334 (405)
T 4b4t_J          286 KNIKIIMATNRL---------------------DILDPALLRPGRIDRKIEFP---PPSVAARAEILRIHSRK-------  334 (405)
T ss_dssp             CCEEEEEEESCS---------------------SSSCHHHHSTTSSCCEEECC---CCCHHHHHHHHHHHHTT-------
T ss_pred             CCeEEEeccCCh---------------------hhCCHhHcCCCcCceEEEcC---CcCHHHHHHHHHHHhcC-------
Confidence            567899999985                     578999985  999999999   88999999999877632       


Q ss_pred             CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ..+ .-.++   ++.|+..+-   |.+|.+|+.++..
T Consensus       335 ~~l-~~dvd---l~~lA~~t~---G~SGADi~~l~~e  364 (405)
T 4b4t_J          335 MNL-TRGIN---LRKVAEKMN---GCSGADVKGVCTE  364 (405)
T ss_dssp             SBC-CSSCC---HHHHHHHCC---SCCHHHHHHHHHH
T ss_pred             CCC-CccCC---HHHHHHHCC---CCCHHHHHHHHHH
Confidence            211 11122   566776432   4466899998886

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.75  E-value=6e-17  Score=166.43  Aligned_cols=200  Identities=16%  Similarity=0.215  Sum_probs=142.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      +.|+|++++++.+.+.+...+.....+.....| ..+||+||||||||++|+++|+.+.+     .+|+.++++++....
T Consensus        12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~~i~~~~l~~~~   86 (322)
T 1xwi_A           12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-----STFFSISSSDLVSKW   86 (322)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-----CEEEEEECCSSCCSS
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-----CcEEEEEhHHHHhhh
Confidence            569999999999988885431100111111244 78999999999999999999999822     289999998875431


Q ss_pred             h--hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633          285 S--IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS  351 (550)
Q Consensus       285 ~--~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts  351 (550)
                      .  ....+..+.+..+....+|||||||+.+.           ..+++.|+..++.-  . .       .-.+++||+||
T Consensus        87 ~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~--~-~-------~~~~v~vI~at  156 (322)
T 1xwi_A           87 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV--G-V-------DNDGILVLGAT  156 (322)
T ss_dssp             CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCS--S-S-------CCTTEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcc--c-c-------cCCCEEEEEec
Confidence            1  11222233333444455899999999872           24677777777643  1 0       12567899999


Q ss_pred             CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      |..                     ..++|++++||+..+.+.   +++.++...|+...+.         +. ...+++.
T Consensus       157 n~~---------------------~~ld~al~rRf~~~i~i~---~P~~~~r~~il~~~l~---------~~-~~~l~~~  202 (322)
T 1xwi_A          157 NIP---------------------WVLDSAIRRRFEKRIYIP---LPEPHARAAMFKLHLG---------TT-QNSLTEA  202 (322)
T ss_dssp             SCT---------------------TTSCHHHHHTCCEEEECC---CCCHHHHHHHHHHHHT---------TC-CBCCCHH
T ss_pred             CCc---------------------ccCCHHHHhhcCeEEEeC---CcCHHHHHHHHHHHHh---------cC-CCCCCHH
Confidence            974                     367899999999899998   8899999999888773         22 4467899


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .++.|+....   |.++++|..+++.
T Consensus       203 ~l~~la~~t~---G~sgadl~~l~~~  225 (322)
T 1xwi_A          203 DFRELGRKTD---GYSGADISIIVRD  225 (322)
T ss_dssp             HHHHHHHTCT---TCCHHHHHHHHHH
T ss_pred             HHHHHHHHcC---CCCHHHHHHHHHH
Confidence            9999998653   4466999999987

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.74  E-value=9.3e-18  Score=170.17  Aligned_cols=169  Identities=14%  Similarity=0.119  Sum_probs=112.2

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-  285 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-  285 (550)
                      .++.-+..++.++..+.+.   +......+.|..+||+||||||||++|++||+.+..      ++++++|+++..... 
T Consensus         8 ~~y~~~~~~~~~~~~~~k~---~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~------~~i~v~~~~l~~~~~g   78 (293)
T 3t15_A            8 GFYIAPAFMDKLVVHITKN---FLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGI------NPIMMSAGELESGNAG   78 (293)
T ss_dssp             TEECCHHHHHHHHHHHHHT---TSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTC------CCEEEEHHHHHCC---
T ss_pred             cccCCHHHHHHHHHHHHHH---HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCC------CEEEEeHHHhhhccCc
Confidence            3444566667777777766   555555556678899999999999999999999977      999999987643211 


Q ss_pred             --hhhHHhHHHHH---HHhCCCCeEEeccccccCH-------------HHHHHHHHhhhhccccccccC-CeEeecCCeE
Q 036633          286 --IKHFFDSLAAL---VKKRPYSVVLFDKIEKANS-------------SILNLLLKILKTDFNRKATRG-IAAFDLTNTL  346 (550)
Q Consensus       286 --~s~liG~lt~a---l~~~p~~VlllDEIeka~~-------------~v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~i  346 (550)
                        ...+...+..+   .+..+.+||||||||++.+             .+++.|++++|...+. -.++ ....+.++++
T Consensus        79 ~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~-~~~~~~~~~~~~~v~  157 (293)
T 3t15_A           79 EPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV-QLPGMYNKQENARVP  157 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC------------CCCCCC
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhcccccc-ccccccccccCCCcE
Confidence              11111122222   2455669999999998876             4679999999976222 1122 3556678899


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                      ||+|||..                     ..++|+|+  +|++.+| +.   | +.++...|+...+
T Consensus       158 vI~ttN~~---------------------~~ld~al~R~~R~d~~i-~~---P-~~~~r~~Il~~~~  198 (293)
T 3t15_A          158 IIVTGNDF---------------------STLYAPLIRDGRMEKFY-WA---P-TREDRIGVCTGIF  198 (293)
T ss_dssp             EEEECSSC---------------------CC--CHHHHHHHEEEEE-EC---C-CHHHHHHHHHHHH
T ss_pred             EEEecCCc---------------------ccCCHHHhCCCCCceeE-eC---c-CHHHHHHHHHHhc
Confidence            99999974                     45678888  6997666 45   5 9999999988666

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.74  E-value=3.8e-17  Score=155.99  Aligned_cols=185  Identities=15%  Similarity=0.260  Sum_probs=139.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++|++.+++.+...+...           ++.+++|+||||||||++|+.+++.+...+ ....++.++++.......
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~-----------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~   84 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVERK-----------NIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDV   84 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHTT-----------CCCCEEEECSTTSSHHHHHHHHHHHHHGGG-GGGGEEEEETTCTTCHHH
T ss_pred             HHHcCcHHHHHHHHHHHhCC-----------CCCeEEEECCCCCCHHHHHHHHHHHHhccc-cccceEEeccccccChHH
Confidence            46899999999998888754           334599999999999999999999874310 123678888877654333


Q ss_pred             hhhHHhHHHHHHH-----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          286 IKHFFDSLAALVK-----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       286 ~s~liG~lt~al~-----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      ....   +.....     .....||+|||++.+++..++.|+++++..  .           .++++|+|||..      
T Consensus        85 ~~~~---~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~--~-----------~~~~~i~~~~~~------  142 (226)
T 2chg_A           85 VRHK---IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY--S-----------KSCRFILSCNYV------  142 (226)
T ss_dssp             HHHH---HHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT--T-----------TTEEEEEEESCG------
T ss_pred             HHHH---HHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc--C-----------CCCeEEEEeCCh------
Confidence            2222   222222     134579999999999999999999999876  4           467788888853      


Q ss_pred             hhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcC
Q 036633          361 VMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNA  440 (550)
Q Consensus       361 ~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~  440 (550)
                                     ..+.+.+.+|+. .+.|.   |++.+++..++...+..       .+.   .+++++++.|+..+
T Consensus       143 ---------------~~~~~~l~~r~~-~i~~~---~~~~~~~~~~l~~~~~~-------~~~---~~~~~~~~~l~~~~  193 (226)
T 2chg_A          143 ---------------SRIIEPIQSRCA-VFRFK---PVPKEAMKKRLLEICEK-------EGV---KITEDGLEALIYIS  193 (226)
T ss_dssp             ---------------GGSCHHHHTTSE-EEECC---CCCHHHHHHHHHHHHHH-------HTC---CBCHHHHHHHHHHH
T ss_pred             ---------------hhcCHHHHHhCc-eeecC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHc
Confidence                           356788999995 89999   99999999888876643       344   68999999998643


Q ss_pred             cccCCCcccHHHHHHcc
Q 036633          441 ARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       441 ~~~~GaN~R~L~~~i~~  457 (550)
                         .| |.|.+.+.++.
T Consensus       194 ---~g-~~r~l~~~l~~  206 (226)
T 2chg_A          194 ---GG-DFRKAINALQG  206 (226)
T ss_dssp             ---TT-CHHHHHHHHHH
T ss_pred             ---CC-CHHHHHHHHHH
Confidence               26 88988888875

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.74  E-value=2e-17  Score=172.25  Aligned_cols=199  Identities=16%  Similarity=0.211  Sum_probs=141.5

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ..|+|++.+++.+..++...+.....+....+| ..+||+||||||||++|+++|+.+..      +|+.++++++....
T Consensus        51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~------~~~~v~~~~l~~~~  124 (355)
T 2qp9_X           51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS------TFFSVSSSDLVSKW  124 (355)
T ss_dssp             GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC------EEEEEEHHHHHSCC
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC------CEEEeeHHHHhhhh
Confidence            458999999999988875321000011112244 78999999999999999999999977      99999988653221


Q ss_pred             --hhhhHHhHHHHHHHhCCCCeEEeccccccCH-----------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633          285 --SIKHFFDSLAALVKKRPYSVVLFDKIEKANS-----------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS  351 (550)
Q Consensus       285 --~~s~liG~lt~al~~~p~~VlllDEIeka~~-----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts  351 (550)
                        .....+..+....+....+|||||||+.+.+           .+++.|+..++.-  .  .      ...+++||+||
T Consensus       125 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~--~--~------~~~~v~vI~at  194 (355)
T 2qp9_X          125 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV--G--N------DSQGVLVLGAT  194 (355)
T ss_dssp             ---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHC--C-----------CCEEEEEEE
T ss_pred             cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcc--c--c------cCCCeEEEeec
Confidence              0111122233333444558999999998874           4678888888643  1  0      12467899999


Q ss_pred             CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      |..                     ..++|++++||+..+.|.   +++.++...|+...+.         +. .+.+++.
T Consensus       195 n~~---------------------~~ld~al~rRf~~~i~i~---~P~~~~r~~il~~~l~---------~~-~~~~~~~  240 (355)
T 2qp9_X          195 NIP---------------------WQLDSAIRRRFERRIYIP---LPDLAARTTMFEINVG---------DT-PSVLTKE  240 (355)
T ss_dssp             SCG---------------------GGSCHHHHHTCCEEEECC---CCCHHHHHHHHHHHHT---------TS-CBCCCHH
T ss_pred             CCc---------------------ccCCHHHHcccCEEEEeC---CcCHHHHHHHHHHHHh---------hC-CCCCCHH
Confidence            974                     357889999999999999   8899999999887773         22 3467889


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .++.|+..+.   |.++++|..+++.
T Consensus       241 ~l~~la~~t~---G~sg~dl~~l~~~  263 (355)
T 2qp9_X          241 DYRTLGAMTE---GYSGSDIAVVVKD  263 (355)
T ss_dssp             HHHHHHHHTT---TCCHHHHHHHHHH
T ss_pred             HHHHHHHHcC---CCCHHHHHHHHHH
Confidence            9999998653   4477999999997

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.73  E-value=7e-17  Score=173.10  Aligned_cols=200  Identities=16%  Similarity=0.215  Sum_probs=138.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ..|+|++.++..+...+...+.....+.....| ..+||+||||||||++|+++|..+.+     .+|+.++++++....
T Consensus       134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-----~~~~~v~~~~l~~~~  208 (444)
T 2zan_A          134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-----STFFSISSSDLVSKW  208 (444)
T ss_dssp             GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-----SEEEEECCC------
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-----CCEEEEeHHHHHhhh
Confidence            458999999999998885321000111111244 79999999999999999999999822     289999998864321


Q ss_pred             h--hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633          285 S--IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS  351 (550)
Q Consensus       285 ~--~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts  351 (550)
                      .  ....+..+....+....+|||||||+.+.           ..+++.|+..++.-  .        ....+++||+||
T Consensus       209 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~--~--------~~~~~v~vI~at  278 (444)
T 2zan_A          209 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV--G--------VDNDGILVLGAT  278 (444)
T ss_dssp             ---CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCS--S--------CCCSSCEEEEEE
T ss_pred             cchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCc--c--------cCCCCEEEEecC
Confidence            0  00111133334444555899999999873           35778888777643  1        112567899999


Q ss_pred             CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      |..                     ..++|+|++||+.++.|.   +++.++...|+...+.         +. .+.+++.
T Consensus       279 n~~---------------------~~ld~al~rRf~~~i~i~---~P~~~~r~~il~~~l~---------~~-~~~l~~~  324 (444)
T 2zan_A          279 NIP---------------------WVLDSAIRRRFEKRIYIP---LPEAHARAAMFRLHLG---------ST-QNSLTEA  324 (444)
T ss_dssp             SCG---------------------GGSCHHHHTTCCEEEECC---CCCHHHHHHHHHHHHT---------TS-CEECCHH
T ss_pred             CCc---------------------cccCHHHHhhcceEEEeC---CcCHHHHHHHHHHHHh---------cC-CCCCCHH
Confidence            974                     357899999999888888   8888999988887773         22 4467899


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .++.|+..+.   |.+|++|..+++.
T Consensus       325 ~l~~la~~t~---G~sgadl~~l~~~  347 (444)
T 2zan_A          325 DFQELGRKTD---GYSGADISIIVRD  347 (444)
T ss_dssp             HHHHHHHHTT---TCCHHHHHHHHHH
T ss_pred             HHHHHHHHcC---CCCHHHHHHHHHH
Confidence            9999998543   4466999999987

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=2.7e-17  Score=172.65  Aligned_cols=192  Identities=17%  Similarity=0.219  Sum_probs=134.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +.|.|.+++++.|.+.+...+.     .+.|+.   -|..+||+||||||||++|+++|..+..      +|+.++++++
T Consensus       182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLAkAiA~e~~~------~fi~v~~s~l  252 (437)
T 4b4t_I          182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLAKAVANQTSA------TFLRIVGSEL  252 (437)
T ss_dssp             GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHHHHHHHHHTC------EEEEEESGGG
T ss_pred             eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHHHHHHHHhCC------CEEEEEHHHh
Confidence            5689999999999998865311     123442   2278999999999999999999999987      9999999887


Q ss_pred             Cchhh--hhhHHh-HHHHHHHhCCCCeEEeccccccC-----------HH---HHHHHHHhhhhccccccccCCeEeecC
Q 036633          281 TELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKAN-----------SS---ILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       281 ~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka~-----------~~---v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      .....  ..+.+- .|..+-...| +||||||||.+-           ..   +++.||..+|.-  .         ...
T Consensus       253 ~sk~vGesek~ir~lF~~Ar~~aP-~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~--~---------~~~  320 (437)
T 4b4t_I          253 IQKYLGDGPRLCRQIFKVAGENAP-SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF--D---------DRG  320 (437)
T ss_dssp             CCSSSSHHHHHHHHHHHHHHHTCS-EEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC--C---------CSS
T ss_pred             hhccCchHHHHHHHHHHHHHhcCC-cEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc--C---------CCC
Confidence            54321  112222 3333334455 899999999652           23   344555555432  1         125


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                      +++||+|||..                     ..++|+|+.  |||..|.|.   ..+.+....|+..++.+        
T Consensus       321 ~ViVIaATNrp---------------------d~LDpALlRpGRfD~~I~v~---lPd~~~R~~Il~~~l~~--------  368 (437)
T 4b4t_I          321 DVKVIMATNKI---------------------ETLDPALIRPGRIDRKILFE---NPDLSTKKKILGIHTSK--------  368 (437)
T ss_dssp             SEEEEEEESCS---------------------TTCCTTSSCTTTEEEEECCC---CCCHHHHHHHHHHHHTT--------
T ss_pred             CEEEEEeCCCh---------------------hhcCHHHhcCCceeEEEEcC---CcCHHHHHHHHHHHhcC--------
Confidence            68899999985                     578999985  999999999   88999999999877732        


Q ss_pred             CCccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                       + .  +++++ ++.|+....   |.+|.+|+.++..
T Consensus       369 -~-~--l~~dvdl~~LA~~T~---GfSGADI~~l~~e  398 (437)
T 4b4t_I          369 -M-N--LSEDVNLETLVTTKD---DLSGADIQAMCTE  398 (437)
T ss_dssp             -S-C--BCSCCCHHHHHHHCC---SCCHHHHHHHHHH
T ss_pred             -C-C--CCCcCCHHHHHHhCC---CCCHHHHHHHHHH
Confidence             2 1  22221 566666432   4466899998886

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.72  E-value=9e-17  Score=169.23  Aligned_cols=200  Identities=19%  Similarity=0.214  Sum_probs=140.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ..|+|++.+++.+...+...............| .++||+||||||||++|+++|..+..      +|+.++|+++....
T Consensus       115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~------~~~~v~~~~l~~~~  188 (389)
T 3vfd_A          115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA------TFFNISAASLTSKY  188 (389)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC------EEEEECSCCC----
T ss_pred             HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC------cEEEeeHHHhhccc
Confidence            468999999999998885431100111111234 79999999999999999999999877      99999999876432


Q ss_pred             h--hhhHHhHHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633          285 S--IKHFFDSLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS  351 (550)
Q Consensus       285 ~--~s~liG~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts  351 (550)
                      .  ....+..+.+..+....+|||||||+.+           ...+++.|+..++..  . -.      .-.+++||+||
T Consensus       189 ~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~--~-~~------~~~~v~vI~at  259 (389)
T 3vfd_A          189 VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGV--Q-SA------GDDRVLVMGAT  259 (389)
T ss_dssp             ---CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHH--C------------CEEEEEEE
T ss_pred             cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcc--c-cc------CCCCEEEEEec
Confidence            1  1112223333334445589999999987           456788888888755  2 10      11457899999


Q ss_pred             CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      |..                     ..+++.+++||+.+|.|.   +++.++...|+...+..       .+   ..++++
T Consensus       260 n~~---------------------~~l~~~l~~R~~~~i~i~---~p~~~~r~~il~~~~~~-------~~---~~l~~~  305 (389)
T 3vfd_A          260 NRP---------------------QELDEAVLRRFIKRVYVS---LPNEETRLLLLKNLLCK-------QG---SPLTQK  305 (389)
T ss_dssp             SCG---------------------GGCCHHHHTTCCEEEECC---CCCHHHHHHHHHHHHTT-------SC---CCSCHH
T ss_pred             CCc---------------------hhcCHHHHcCcceEEEcC---CcCHHHHHHHHHHHHHh-------cC---CCCCHH
Confidence            963                     367889999998889999   88999999998877632       33   368999


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +++.|+....   |.+++.|..+++.
T Consensus       306 ~~~~la~~~~---g~~~~~l~~L~~~  328 (389)
T 3vfd_A          306 ELAQLARMTD---GYSGSDLTALAKD  328 (389)
T ss_dssp             HHHHHHHHTT---TCCHHHHHHHHHH
T ss_pred             HHHHHHHHcC---CCCHHHHHHHHHH
Confidence            9999988553   3355788887776

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=3.8e-17  Score=173.04  Aligned_cols=193  Identities=18%  Similarity=0.180  Sum_probs=135.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +.|.|.+++++.|.+.+...+.     .+.|+.   -|..+||+||||||||++|+++|..+..      +|+.++++++
T Consensus       209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~---pprGILLyGPPGTGKTlLAkAiA~e~~~------~fi~vs~s~L  279 (467)
T 4b4t_H          209 SDVGGCKDQIEKLREVVELPLLSPERFATLGID---PPKGILLYGPPGTGKTLCARAVANRTDA------TFIRVIGSEL  279 (467)
T ss_dssp             SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC---CCSEEEECSCTTSSHHHHHHHHHHHHTC------EEEEEEGGGG
T ss_pred             HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC---CCCceEeeCCCCCcHHHHHHHHHhccCC------CeEEEEhHHh
Confidence            5799999999999888754311     133442   2378999999999999999999999988      9999999987


Q ss_pred             Cchhh--hhhHHh-HHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeecC
Q 036633          281 TELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       281 ~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      .....  ..+.+- .|..+-...| +||||||+|.+.+              .+++.||..|+..  .         ...
T Consensus       280 ~sk~vGesek~ir~lF~~Ar~~aP-~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--~---------~~~  347 (467)
T 4b4t_H          280 VQKYVGEGARMVRELFEMARTKKA-CIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF--D---------PRG  347 (467)
T ss_dssp             CCCSSSHHHHHHHHHHHHHHHTCS-EEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS--C---------CTT
T ss_pred             hcccCCHHHHHHHHHHHHHHhcCC-ceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc--C---------CCC
Confidence            54321  112222 3444444455 8999999996531              2445556555533  1         125


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                      +++||+|||..                     ..++|+|+.  |||..|.|.   ..+.++...|++.++..       .
T Consensus       348 ~ViVIaATNrp---------------------d~LDpALlRpGRFD~~I~i~---lPd~~~R~~Ilk~~l~~-------~  396 (467)
T 4b4t_H          348 NIKVMFATNRP---------------------NTLDPALLRPGRIDRKVEFS---LPDLEGRANIFRIHSKS-------M  396 (467)
T ss_dssp             TEEEEEECSCT---------------------TSBCHHHHSTTTCCEEECCC---CCCHHHHHHHHHHHHTT-------S
T ss_pred             cEEEEeCCCCc---------------------ccCChhhhccccccEEEEeC---CcCHHHHHHHHHHHhcC-------C
Confidence            67899999975                     578999985  999999999   88999999999877732       2


Q ss_pred             CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .+ .-.++   ++.|+..+-   |.+|.+|+.++..
T Consensus       397 ~l-~~dvd---l~~LA~~T~---GfSGADI~~l~~e  425 (467)
T 4b4t_H          397 SV-ERGIR---WELISRLCP---NSTGAELRSVCTE  425 (467)
T ss_dssp             CB-CSSCC---HHHHHHHCC---SCCHHHHHHHHHH
T ss_pred             CC-CCCCC---HHHHHHHCC---CCCHHHHHHHHHH
Confidence            11 11222   455666432   4466999999886

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.72  E-value=7.2e-17  Score=166.53  Aligned_cols=212  Identities=15%  Similarity=0.134  Sum_probs=133.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCCCceeEEecCCCCc--
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DNDNHLIHFDMGNYTE--  282 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~~~li~id~s~~~~--  282 (550)
                      ..++||+.++..+..+....           .++++||+||||||||++|+++|+.+.... ....+   ++|+....  
T Consensus        24 ~~i~G~~~~~~~l~~~~~~~-----------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~~~   89 (350)
T 1g8p_A           24 SAIVGQEDMKLALLLTAVDP-----------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEMIP   89 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHCG-----------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGGSC
T ss_pred             hhccChHHHHHHHHHHhhCC-----------CCceEEEECCCCccHHHHHHHHHHhCcccccccccc---cccccccccc
Confidence            35899999877654443322           235799999999999999999999875300 00012   23332211  


Q ss_pred             ----------------------hhhhhhHHh--HHHHHHH------------hCCCCeEEeccccccCHHHHHHHHHhhh
Q 036633          283 ----------------------LESIKHFFD--SLAALVK------------KRPYSVVLFDKIEKANSSILNLLLKILK  326 (550)
Q Consensus       283 ----------------------~~~~s~liG--~lt~al~------------~~p~~VlllDEIeka~~~v~~~Ll~~ld  326 (550)
                                            ..+.+.++|  .+..++.            ...++|||||||+++++++++.|+++++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le  169 (350)
T 1g8p_A           90 DWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQ  169 (350)
T ss_dssp             TTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred             chhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHh
Confidence                                  011234454  1111111            1125799999999999999999999999


Q ss_pred             hccccccccCCeEe-ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC-HHHHH
Q 036633          327 TDFNRKATRGIAAF-DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL-DTTRL  404 (550)
Q Consensus       327 ~g~~~~l~d~g~~v-d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~-~e~i~  404 (550)
                      +|... +...|... .-.++++|+|+|..                    ...|+++|++||+..+.+.   +++ .++..
T Consensus       170 ~~~~~-~~~~g~~~~~~~~~~li~~~n~~--------------------~~~l~~~L~~R~~~~~~l~---~~~~~~~~~  225 (350)
T 1g8p_A          170 SGENV-VERDGLSIRHPARFVLVGSGNPE--------------------EGDLRPQLLDRFGLSVEVL---SPRDVETRV  225 (350)
T ss_dssp             HSEEE-ECCTTCCEEEECCEEEEEEECSC--------------------SCCCCHHHHTTCSEEEECC---CCCSHHHHH
T ss_pred             cCceE-EEecceEEeeCCceEEEEEeCCC--------------------CCCCCHHHHhhcceEEEcC---CCCcHHHHH
Confidence            98333 33333222 22367899999963                    1368999999997668888   774 55555


Q ss_pred             HHHHHHHHHH-----------------HHHh---ccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc
Q 036633          405 LLREWACEET-----------------KRRN---NDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       405 ~I~~~~l~~~-----------------~~~l---~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~  457 (550)
                      .|+...+...                 .+++   ..... .+.++++++++|+.+++ .+.+ +.|.+.++++.
T Consensus       226 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ls~~~~~~l~~~~~~~~~~-~~R~~~~ll~~  297 (350)
T 1g8p_A          226 EVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLP-KVEAPNTALYDCAALCIALGSD-GLRGELTLLRS  297 (350)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGG-GCBCCHHHHHHHHHHHHHSSSC-SHHHHHHHHHH
T ss_pred             HHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHHhCCC-CccHHHHHHHH
Confidence            7776632210                 0111   11111 34899999999999877 4442 23888888875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=6.1e-17  Score=171.76  Aligned_cols=193  Identities=21%  Similarity=0.253  Sum_probs=135.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +.|.|.+++++.|.+.+...+.     .+.|+.   -|..+||+||||||||++|+++|..+..      +|+.++++++
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~---~prGvLL~GPPGtGKTllAkAiA~e~~~------~~~~v~~s~l  251 (437)
T 4b4t_L          181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIK---PPKGVLLYGPPGTGKTLLAKAVAATIGA------NFIFSPASGI  251 (437)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGGT
T ss_pred             hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEehhhh
Confidence            5689999999999988865321     123442   2278999999999999999999999988      9999999987


Q ss_pred             Cchhh--hhhHHh-HHHHHHHhCCCCeEEeccccccC-----------H---HHHHHHHHhhhhccccccccCCeEeecC
Q 036633          281 TELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKAN-----------S---SILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       281 ~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka~-----------~---~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      .....  ....+. .|..+-...| +||||||||.+.           .   .+++.||..+|.-  .         ...
T Consensus       252 ~sk~~Gese~~ir~~F~~A~~~~P-~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--~---------~~~  319 (437)
T 4b4t_L          252 VDKYIGESARIIREMFAYAKEHEP-CIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF--D---------NLG  319 (437)
T ss_dssp             CCSSSSHHHHHHHHHHHHHHHSCS-EEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS--S---------CTT
T ss_pred             ccccchHHHHHHHHHHHHHHhcCC-ceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc--c---------CCC
Confidence            64321  112222 3333434445 999999999652           1   2455667666533  1         125


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                      +++||+|||..                     ..++|+|+  +|||..|.|.   ..+.+....|+..++.+       .
T Consensus       320 ~vivI~ATNrp---------------------~~LDpAllRpGRfD~~I~i~---lPd~~~R~~Il~~~~~~-------~  368 (437)
T 4b4t_L          320 QTKIIMATNRP---------------------DTLDPALLRPGRLDRKVEIP---LPNEAGRLEIFKIHTAK-------V  368 (437)
T ss_dssp             SSEEEEEESST---------------------TSSCTTTTSTTSEEEEECCC---CCCHHHHHHHHHHHHHT-------S
T ss_pred             CeEEEEecCCc---------------------hhhCHHHhCCCccceeeecC---CcCHHHHHHHHHHHhcC-------C
Confidence            67899999975                     57899997  4699999999   88999999999887743       1


Q ss_pred             CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .. .-.++   ++.|+..+.   |.+|.+|+.++..
T Consensus       369 ~~-~~d~d---l~~lA~~t~---G~sGADi~~l~~e  397 (437)
T 4b4t_L          369 KK-TGEFD---FEAAVKMSD---GFNGADIRNCATE  397 (437)
T ss_dssp             CB-CSCCC---HHHHHHTCC---SCCHHHHHHHHHH
T ss_pred             CC-CcccC---HHHHHHhCC---CCCHHHHHHHHHH
Confidence            11 11222   466676432   4466999999886

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.72  E-value=4.8e-17  Score=172.39  Aligned_cols=194  Identities=18%  Similarity=0.226  Sum_probs=135.6

Q ss_pred             cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      -+.|.|.+++++.|.+.+...+.     .+.|+.   -|..+||+||||||||++|+++|..+..      +|+.+++++
T Consensus       180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllAkAiA~e~~~------~f~~v~~s~  250 (434)
T 4b4t_M          180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLARACAAQTNA------TFLKLAAPQ  250 (434)
T ss_dssp             GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGG
T ss_pred             hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHHHHHHHHhCC------CEEEEehhh
Confidence            35699999999999888765321     133442   2378999999999999999999999987      999999998


Q ss_pred             CCchhh--hhhHHh-HHHHHHHhCCCCeEEecccccc-----------CHH---HHHHHHHhhhhccccccccCCeEeec
Q 036633          280 YTELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKA-----------NSS---ILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       280 ~~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka-----------~~~---v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      +.....  ..+.+- .|..+-...| +||||||||.+           +..   +.+.||..+|.-  .   .      -
T Consensus       251 l~~~~vGese~~ir~lF~~A~~~aP-~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~--~---~------~  318 (434)
T 4b4t_M          251 LVQMYIGEGAKLVRDAFALAKEKAP-TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF--S---S------D  318 (434)
T ss_dssp             GCSSCSSHHHHHHHHHHHHHHHHCS-EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS--C---S------S
T ss_pred             hhhcccchHHHHHHHHHHHHHhcCC-eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc--C---C------C
Confidence            754321  112222 3334444566 89999999854           123   345566666532  1   1      1


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                      .+++||+|||..                     ..++|+|+.  |||..|.|.   +.+.+....|++.++.+       
T Consensus       319 ~~ViVIaaTNrp---------------------~~LD~AllRpGRfD~~I~i~---lPd~~~R~~Il~~~~~~-------  367 (434)
T 4b4t_M          319 DRVKVLAATNRV---------------------DVLDPALLRSGRLDRKIEFP---LPSEDSRAQILQIHSRK-------  367 (434)
T ss_dssp             CSSEEEEECSSC---------------------CCCCTTTCSTTSEEEEEECC---CCCHHHHHHHHHHHHHH-------
T ss_pred             CCEEEEEeCCCc---------------------hhcCHhHhcCCceeEEEEeC---CcCHHHHHHHHHHHhcC-------
Confidence            467899999975                     578999976  999999999   88999999999887754       


Q ss_pred             CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ... .-.++   ++.|+..+-   |.+|.+|+.++..
T Consensus       368 ~~~-~~dvd---l~~lA~~t~---G~sGADi~~l~~e  397 (434)
T 4b4t_M          368 MTT-DDDIN---WQELARSTD---EFNGAQLKAVTVE  397 (434)
T ss_dssp             SCB-CSCCC---HHHHHHHCS---SCCHHHHHHHHHH
T ss_pred             CCC-CCcCC---HHHHHHhCC---CCCHHHHHHHHHH
Confidence            111 11222   456666432   4466999999986

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.72  E-value=8.3e-17  Score=166.11  Aligned_cols=190  Identities=16%  Similarity=0.224  Sum_probs=140.6

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      -..++||+++++.+..++...           ++++++|+||||||||++|+++++.+.........++.++++......
T Consensus        36 ~~~i~g~~~~~~~l~~~l~~~-----------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~  104 (353)
T 1sxj_D           36 LDEVTAQDHAVTVLKKTLKSA-----------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS  104 (353)
T ss_dssp             TTTCCSCCTTHHHHHHHTTCT-----------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH
T ss_pred             HHHhhCCHHHHHHHHHHHhcC-----------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH
Confidence            367999999999988887654           344599999999999999999999975300012357788887754333


Q ss_pred             hhhhHHhHHHHH-----------HH-hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCC
Q 036633          285 SIKHFFDSLAAL-----------VK-KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSD  352 (550)
Q Consensus       285 ~~s~liG~lt~a-----------l~-~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN  352 (550)
                      .+...+..+...           .. ..++.||+|||++.+++..++.|+++++++  .           .++.||+++|
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~--~-----------~~~~~il~~~  171 (353)
T 1sxj_D          105 IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY--S-----------GVTRFCLICN  171 (353)
T ss_dssp             HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT--T-----------TTEEEEEEES
T ss_pred             HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc--C-----------CCceEEEEeC
Confidence            332222221110           00 123469999999999999999999999987  5           4566788887


Q ss_pred             CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633          353 LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSA  432 (550)
Q Consensus       353 ~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a  432 (550)
                      ..                     ..+.|.+.+|+ ..+.|.   |++.+++..++...+.       ..++   .+++++
T Consensus       172 ~~---------------------~~l~~~l~sR~-~~i~~~---~~~~~~~~~~l~~~~~-------~~~~---~i~~~~  216 (353)
T 1sxj_D          172 YV---------------------TRIIDPLASQC-SKFRFK---ALDASNAIDRLRFISE-------QENV---KCDDGV  216 (353)
T ss_dssp             CG---------------------GGSCHHHHHHS-EEEECC---CCCHHHHHHHHHHHHH-------TTTC---CCCHHH
T ss_pred             ch---------------------hhCcchhhccC-ceEEeC---CCCHHHHHHHHHHHHH-------HhCC---CCCHHH
Confidence            53                     24678899999 589999   9999999988887663       2444   789999


Q ss_pred             HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          433 LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       433 ~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +++|+..++   | |.|.+.+.++.
T Consensus       217 l~~l~~~~~---G-~~r~~~~~l~~  237 (353)
T 1sxj_D          217 LERILDISA---G-DLRRGITLLQS  237 (353)
T ss_dssp             HHHHHHHTS---S-CHHHHHHHHHH
T ss_pred             HHHHHHHcC---C-CHHHHHHHHHH
Confidence            999998765   6 88988888875

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.71  E-value=8.4e-17  Score=163.96  Aligned_cols=185  Identities=16%  Similarity=0.261  Sum_probs=138.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++||+++++.+...+...           ++.+++|+||||||||++|+++++.+.+.+ ...+++.++++.......
T Consensus        25 ~~~~g~~~~~~~l~~~l~~~-----------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~   92 (327)
T 1iqp_A           25 DDIVGQEHIVKRLKHYVKTG-----------SMPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDERGINV   92 (327)
T ss_dssp             TTCCSCHHHHHHHHHHHHHT-----------CCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHHHHHT
T ss_pred             HHhhCCHHHHHHHHHHHHcC-----------CCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccCchHH
Confidence            46999999999988877654           344699999999999999999999986500 012477788765422111


Q ss_pred             hhhHHhHHHHHHHh-----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          286 IKHFFDSLAALVKK-----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       286 ~s~liG~lt~al~~-----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      +..   .+.+....     .++.||+|||++.++++.++.|++++++.  .           .+++||+|||..      
T Consensus        93 ~~~---~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~--~-----------~~~~~i~~~~~~------  150 (327)
T 1iqp_A           93 IRE---KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF--S-----------SNVRFILSCNYS------  150 (327)
T ss_dssp             THH---HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT--T-----------TTEEEEEEESCG------
T ss_pred             HHH---HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc--C-----------CCCeEEEEeCCc------
Confidence            111   22222222     34679999999999999999999999987  4           467788888853      


Q ss_pred             hhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcC
Q 036633          361 VMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNA  440 (550)
Q Consensus       361 ~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~  440 (550)
                                     ..+.+.+.+|+ .++.|.   |++.+++..++...+.       ..|+   .++++++++|+..+
T Consensus       151 ---------------~~l~~~l~sr~-~~~~~~---~l~~~~~~~~l~~~~~-------~~~~---~~~~~~~~~l~~~~  201 (327)
T 1iqp_A          151 ---------------SKIIEPIQSRC-AIFRFR---PLRDEDIAKRLRYIAE-------NEGL---ELTEEGLQAILYIA  201 (327)
T ss_dssp             ---------------GGSCHHHHHTE-EEEECC---CCCHHHHHHHHHHHHH-------TTTC---EECHHHHHHHHHHH
T ss_pred             ---------------cccCHHHHhhC-cEEEec---CCCHHHHHHHHHHHHH-------hcCC---CCCHHHHHHHHHHC
Confidence                           34678899999 589999   9999999988877663       2454   68999999999754


Q ss_pred             cccCCCcccHHHHHHcc
Q 036633          441 ARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       441 ~~~~GaN~R~L~~~i~~  457 (550)
                      .   | |.|.+.+.++.
T Consensus       202 ~---g-~~r~~~~~l~~  214 (327)
T 1iqp_A          202 E---G-DMRRAINILQA  214 (327)
T ss_dssp             T---T-CHHHHHHHHHH
T ss_pred             C---C-CHHHHHHHHHH
Confidence            2   6 77888887765

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.71  E-value=4.7e-17  Score=165.28  Aligned_cols=188  Identities=15%  Similarity=0.253  Sum_probs=138.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++||+++++.+...+...           ++.+++|+||||||||++|+++++.+.+.+ ...+++.+|++.......
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~-----------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~   84 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVERK-----------NIPHLLFSGPPGTGKTATAIALARDLFGEN-WRDNFIEMNASDERGIDV   84 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTTTT-----------CCCCEEEESSSSSSHHHHHHHHHHHHHTTC-HHHHCEEEETTSTTCTTT
T ss_pred             HHHhCCHHHHHHHHHHHhCC-----------CCCeEEEECcCCcCHHHHHHHHHHHhcCCc-ccCCeEEEeCccccChHH
Confidence            35899999998876665533           333599999999999999999999985410 123688899887654333


Q ss_pred             hhhHHhHHHHH--HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhh
Q 036633          286 IKHFFDSLAAL--VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVML  363 (550)
Q Consensus       286 ~s~liG~lt~a--l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~  363 (550)
                      +...+..+...  +...++.||+|||++.++++.++.|++++++.  .           .++++|++||..         
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~--~-----------~~~~~i~~~~~~---------  142 (319)
T 2chq_A           85 VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY--S-----------KSCRFILSCNYV---------  142 (319)
T ss_dssp             SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSS--S-----------SSEEEEEEESCG---------
T ss_pred             HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhc--C-----------CCCeEEEEeCCh---------
Confidence            33332222110  01134579999999999999999999999876  4           567788888853         


Q ss_pred             hhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCccc
Q 036633          364 TATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARK  443 (550)
Q Consensus       364 ~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~  443 (550)
                                  ..+.|.+.+|+ .++.|.   |++.+++..++...+.       ..|+   .+++++++.|+..+   
T Consensus       143 ------------~~l~~~l~sr~-~~i~~~---~~~~~~~~~~l~~~~~-------~~~~---~i~~~~l~~l~~~~---  193 (319)
T 2chq_A          143 ------------SRIIEPIQSRC-AVFRFK---PVPKEAMKKRLLEICE-------KEGV---KITEDGLEALIYIS---  193 (319)
T ss_dssp             ------------GGSCHHHHTTC-EEEECC---CCCHHHHHHHHHHHHH-------TTCC---CBCHHHHHHHHHTT---
T ss_pred             ------------hhcchHHHhhC-eEEEec---CCCHHHHHHHHHHHHH-------HcCC---CCCHHHHHHHHHHc---
Confidence                        35778999999 599999   9999999888877663       2444   78999999999743   


Q ss_pred             CCCcccHHHHHHcc
Q 036633          444 YGQNGEGLKRWMDQ  457 (550)
Q Consensus       444 ~GaN~R~L~~~i~~  457 (550)
                      .| |.|.+.+.++.
T Consensus       194 ~G-~~r~~~~~l~~  206 (319)
T 2chq_A          194 GG-DFRKAINALQG  206 (319)
T ss_dssp             TT-CHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHH
Confidence            26 88888887774

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.71  E-value=2.5e-16  Score=163.84  Aligned_cols=202  Identities=17%  Similarity=0.169  Sum_probs=136.6

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~  283 (550)
                      -+.++||+.++..+.......   ..|.    .| .++||+||||||||++|+++|+.+..    ..+++.++++.+...
T Consensus        43 ~~~ivG~~~~~~~l~~l~~~~---~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~~----~~~~~~~~~~~~~~~  111 (368)
T 3uk6_A           43 SQGMVGQLAARRAAGVVLEMI---REGK----IAGRAVLIAGQPGTGKTAIAMGMAQALGP----DTPFTAIAGSEIFSL  111 (368)
T ss_dssp             ETTEESCHHHHHHHHHHHHHH---HTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHCS----SCCEEEEEGGGGSCS
T ss_pred             hhhccChHHHHHHHHHHHHHH---HcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhcc----cCCcccccchhhhhc
Confidence            457999999988765555443   2222    23 69999999999999999999999854    347888887652211


Q ss_pred             hh----------------------------------------------------hhhHHhHHHHHHH----hCC----CC
Q 036633          284 ES----------------------------------------------------IKHFFDSLAALVK----KRP----YS  303 (550)
Q Consensus       284 ~~----------------------------------------------------~s~liG~lt~al~----~~p----~~  303 (550)
                      ..                                                    ...+...+..+..    ...    .+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~  191 (368)
T 3uk6_A          112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG  191 (368)
T ss_dssp             SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred             ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence            10                                                    0011112222221    111    26


Q ss_pred             eEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh
Q 036633          304 VVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL  383 (550)
Q Consensus       304 VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll  383 (550)
                      ||||||++.++++.++.|++.+++.  .           ... +++++|.+...+.....+         ....++|+|+
T Consensus       192 vl~IDEi~~l~~~~~~~L~~~le~~--~-----------~~~-~ii~t~~~~~~i~~t~~~---------~~~~l~~~l~  248 (368)
T 3uk6_A          192 VLFIDEVHMLDIESFSFLNRALESD--M-----------APV-LIMATNRGITRIRGTSYQ---------SPHGIPIDLL  248 (368)
T ss_dssp             EEEEESGGGSBHHHHHHHHHHTTCT--T-----------CCE-EEEEESCSEEECBTSSCE---------EETTCCHHHH
T ss_pred             eEEEhhccccChHHHHHHHHHhhCc--C-----------CCe-eeeecccceeeeeccCCC---------CcccCCHHHH
Confidence            9999999999999999999999887  4           222 344444321110000000         0135789999


Q ss_pred             hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          384 KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       384 ~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +|| .++.|.   |++.+++..++...+..       .++   .++++++++|+..+++  | |+|.+.++++.
T Consensus       249 sR~-~~i~~~---~~~~~e~~~il~~~~~~-------~~~---~~~~~~l~~l~~~~~~--G-~~r~~~~ll~~  305 (368)
T 3uk6_A          249 DRL-LIVSTT---PYSEKDTKQILRIRCEE-------EDV---EMSEDAYTVLTRIGLE--T-SLRYAIQLITA  305 (368)
T ss_dssp             TTE-EEEEEC---CCCHHHHHHHHHHHHHH-------TTC---CBCHHHHHHHHHHHHH--S-CHHHHHHHHHH
T ss_pred             hhc-cEEEec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHhcC--C-CHHHHHHHHHH
Confidence            999 568999   99999999999887753       444   7899999999986653  5 78999999986

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.71  E-value=2.8e-16  Score=158.81  Aligned_cols=198  Identities=20%  Similarity=0.236  Sum_probs=139.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhh---hcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAA---KKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~---~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      ..++|++.+++.+...+......   ..++   ..| .+++|+||||||||++|+++|..+..      +++.++|+++.
T Consensus        21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~---~~~~~~vll~Gp~GtGKT~la~~la~~~~~------~~~~i~~~~l~   91 (297)
T 3b9p_A           21 TDIAGQDVAKQALQEMVILPSVRPELFTGL---RAPAKGLLLFGPPGNGKTLLARAVATECSA------TFLNISAASLT   91 (297)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCGG---GCCCSEEEEESSSSSCHHHHHHHHHHHTTC------EEEEEESTTTS
T ss_pred             HHhCChHHHHHHHHHHHHhhhhCHHHHhcC---CCCCCeEEEECcCCCCHHHHHHHHHHHhCC------CeEEeeHHHHh
Confidence            45899999999998888653100   1112   133 79999999999999999999999876      99999998875


Q ss_pred             chhh--hhhHHhHHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633          282 ELES--IKHFFDSLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLII  348 (550)
Q Consensus       282 ~~~~--~s~liG~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI  348 (550)
                      ....  ....+..+.........+||||||++.+           ...+++.|+..++..  . ..     ....+++||
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~--~-~~-----~~~~~v~vi  163 (297)
T 3b9p_A           92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGL--P-GN-----PDGDRIVVL  163 (297)
T ss_dssp             SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHC--C------------CEEEE
T ss_pred             hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcc--c-cc-----CCCCcEEEE
Confidence            4321  1111222233334445589999999876           356778888888755  2 11     112457889


Q ss_pred             EeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 036633          349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCP  428 (550)
Q Consensus       349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~  428 (550)
                      +|||..                     ..+.|.+++||+..+.|.   +++.++...|+...+..       .+.   .+
T Consensus       164 ~~tn~~---------------------~~l~~~l~~R~~~~i~~~---~p~~~~r~~il~~~~~~-------~~~---~~  209 (297)
T 3b9p_A          164 AATNRP---------------------QELDEAALRRFTKRVYVS---LPDEQTRELLLNRLLQK-------QGS---PL  209 (297)
T ss_dssp             EEESCG---------------------GGBCHHHHHHCCEEEECC---CCCHHHHHHHHHHHHGG-------GSC---CS
T ss_pred             eecCCh---------------------hhCCHHHHhhCCeEEEeC---CcCHHHHHHHHHHHHHh-------cCC---CC
Confidence            999963                     356888999999888888   77888888888776632       333   57


Q ss_pred             CHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          429 STSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       429 ~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++++++.|+..+.   |.+++.|+.+++.
T Consensus       210 ~~~~~~~la~~~~---g~~~~~l~~l~~~  235 (297)
T 3b9p_A          210 DTEALRRLAKITD---GYSGSDLTALAKD  235 (297)
T ss_dssp             CHHHHHHHHHHTT---TCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcC---CCCHHHHHHHHHH
Confidence            8999999998653   4355889888886

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.70  E-value=6.8e-17  Score=171.11  Aligned_cols=195  Identities=20%  Similarity=0.219  Sum_probs=134.5

Q ss_pred             cCcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      -+.|.|.+++++.|.+.+...+.     .+.|+.   -|..+||+||||||||++|+++|..+..      +|+.+++++
T Consensus       171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~---~prGiLL~GPPGtGKT~lakAiA~~~~~------~~~~v~~~~  241 (428)
T 4b4t_K          171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGID---PPRGVLLYGPPGTGKTMLVKAVANSTKA------AFIRVNGSE  241 (428)
T ss_dssp             GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCCEEEEESCTTTTHHHHHHHHHHHHTC------EEEEEEGGG
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCceEEEECCCCCCHHHHHHHHHHHhCC------CeEEEecch
Confidence            46799999999999888865321     123442   2368999999999999999999999988      999999998


Q ss_pred             CCchhh--hhhHHh-HHHHHHHhCCCCeEEeccccccC--------------HHHHHHHHHhhhhccccccccCCeEeec
Q 036633          280 YTELES--IKHFFD-SLAALVKKRPYSVVLFDKIEKAN--------------SSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       280 ~~~~~~--~s~liG-~lt~al~~~p~~VlllDEIeka~--------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      +.....  ....+. .|..+-...| +||||||+|.+.              ..+.+.||..+|.-  .         ..
T Consensus       242 l~~~~~Ge~e~~ir~lF~~A~~~aP-~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~--~---------~~  309 (428)
T 4b4t_K          242 FVHKYLGEGPRMVRDVFRLARENAP-SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF--D---------QS  309 (428)
T ss_dssp             TCCSSCSHHHHHHHHHHHHHHHTCS-EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS--C---------SS
T ss_pred             hhccccchhHHHHHHHHHHHHHcCC-CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC--C---------CC
Confidence            754321  111222 3344444455 999999998531              23567777777642  1         12


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                      .+++||+|||..                     ..++|+|+.  |||..|.|.  .+.+.++...|+..++.+       
T Consensus       310 ~~v~vI~aTN~~---------------------~~LD~AllRpGRfd~~I~~p--~lPd~~~R~~Il~~~~~~-------  359 (428)
T 4b4t_K          310 TNVKVIMATNRA---------------------DTLDPALLRPGRLDRKIEFP--SLRDRRERRLIFGTIASK-------  359 (428)
T ss_dssp             CSEEEEEEESCS---------------------SSCCHHHHSSSSEEEEEECC--SSCCHHHHHHHHHHHHHS-------
T ss_pred             CCEEEEEecCCh---------------------hhcChhhhcCCcceEEEEcC--CCCCHHHHHHHHHHHhcC-------
Confidence            568899999975                     578999985  999999994  034778888888877642       


Q ss_pred             CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ..+ .-.++   ++.|+..+.   |.+|.+|+.+++.
T Consensus       360 ~~l-~~~~d---l~~lA~~t~---G~sgadi~~l~~e  389 (428)
T 4b4t_K          360 MSL-APEAD---LDSLIIRND---SLSGAVIAAIMQE  389 (428)
T ss_dssp             SCB-CTTCC---HHHHHHHTT---TCCHHHHHHHHHH
T ss_pred             CCC-CcccC---HHHHHHHCC---CCCHHHHHHHHHH
Confidence            211 11122   566666432   4466999999986

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.70  E-value=2.7e-16  Score=163.78  Aligned_cols=200  Identities=16%  Similarity=0.160  Sum_probs=139.9

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ..++|++.+++.+...+...+.....+....++ .++||+||||||||++|+++|+.+..      +|+.++|+++....
T Consensus        84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~------~~~~i~~~~l~~~~  157 (357)
T 3d8b_A           84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA------TFFSISASSLTSKW  157 (357)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC------EEEEEEGGGGCCSS
T ss_pred             HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC------eEEEEehHHhhccc
Confidence            458999999999998886531000001111233 78999999999999999999999866      99999999875432


Q ss_pred             h--hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633          285 S--IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS  351 (550)
Q Consensus       285 ~--~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts  351 (550)
                      .  ....+..+....+....+|||||||+.+.           ..+++.|+..++..  . ..      .-.+++||+||
T Consensus       158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~--~-~~------~~~~v~vI~at  228 (357)
T 3d8b_A          158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGA--T-TS------SEDRILVVGAT  228 (357)
T ss_dssp             TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEE
T ss_pred             cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcc--c-cc------CCCCEEEEEec
Confidence            1  11122233333444555899999998763           35678888888754  2 11      11467789999


Q ss_pred             CCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHH
Q 036633          352 DLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTS  431 (550)
Q Consensus       352 N~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~  431 (550)
                      |..                     ..+.+++++||+..+.|.   +++.++...++...+..       .+   +.++++
T Consensus       229 n~~---------------------~~l~~~l~~Rf~~~i~i~---~p~~~~r~~il~~~~~~-------~~---~~l~~~  274 (357)
T 3d8b_A          229 NRP---------------------QEIDEAARRRLVKRLYIP---LPEASARKQIVINLMSK-------EQ---CCLSEE  274 (357)
T ss_dssp             SCG---------------------GGBCHHHHTTCCEEEECC---CCCHHHHHHHHHHHHHT-------SC---BCCCHH
T ss_pred             CCh---------------------hhCCHHHHhhCceEEEeC---CcCHHHHHHHHHHHHhh-------cC---CCccHH
Confidence            963                     356788999998888888   88889999888877632       33   367899


Q ss_pred             HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          432 ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       432 a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .++.|+..+.   |.+++.|+.+++.
T Consensus       275 ~l~~la~~t~---G~s~~dl~~l~~~  297 (357)
T 3d8b_A          275 EIEQIVQQSD---AFSGADMTQLCRE  297 (357)
T ss_dssp             HHHHHHHHTT---TCCHHHHHHHHHH
T ss_pred             HHHHHHHHcC---CCCHHHHHHHHHH
Confidence            9999988543   3355888888876

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.69  E-value=1.4e-16  Score=163.74  Aligned_cols=200  Identities=15%  Similarity=0.157  Sum_probs=141.0

Q ss_pred             HHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeE
Q 036633          195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIH  274 (550)
Q Consensus       195 ~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~  274 (550)
                      +.+..+...+...++||++++..+..++...             .+++|+||||||||++|+++|+.+..      ++.+
T Consensus        16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~-------------~~vll~G~pGtGKT~la~~la~~~~~------~~~~   76 (331)
T 2r44_A           16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTG-------------GHILLEGVPGLAKTLSVNTLAKTMDL------DFHR   76 (331)
T ss_dssp             HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT-------------CCEEEESCCCHHHHHHHHHHHHHTTC------CEEE
T ss_pred             HHHHHHHHHhccceeCcHHHHHHHHHHHHcC-------------CeEEEECCCCCcHHHHHHHHHHHhCC------CeEE
Confidence            3466778888899999999999888777643             48999999999999999999999876      8999


Q ss_pred             EecCCCCchhhhhhHHhHH-----HHH--HHhCC--CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC-C
Q 036633          275 FDMGNYTELESIKHFFDSL-----AAL--VKKRP--YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT-N  344 (550)
Q Consensus       275 id~s~~~~~~~~s~liG~l-----t~a--l~~~p--~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~-~  344 (550)
                      ++|+....   .+.++|..     ...  ....+  .+|+||||++++++.+++.|++.++++  . ++..|..+.+. +
T Consensus        77 i~~~~~~~---~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~--~-~~~~g~~~~~~~~  150 (331)
T 2r44_A           77 IQFTPDLL---PSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEK--Q-VTIGDTTYPLDNP  150 (331)
T ss_dssp             EECCTTCC---HHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHS--E-EEETTEEEECCSS
T ss_pred             EecCCCCC---hhhcCCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcC--c-eeeCCEEEECCCC
Confidence            99864332   12233300     000  00111  279999999999999999999999999  5 54455554444 4


Q ss_pred             eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH----------
Q 036633          345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET----------  414 (550)
Q Consensus       345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~----------  414 (550)
                      .++|+|+|.....  .              ...++++|++||+..+.|.   +++.++...|+...+...          
T Consensus       151 ~~viat~np~~~~--~--------------~~~l~~~l~~Rf~~~i~i~---~p~~~~~~~il~~~~~~~~~~~~~~~~~  211 (331)
T 2r44_A          151 FLVLATQNPVEQE--G--------------TYPLPEAQVDRFMMKIHLT---YLDKESELEVMRRVSNMNFNYQVQKIVS  211 (331)
T ss_dssp             CEEEEEECTTCCS--C--------------CCCCCHHHHTTSSEEEECC---CCCHHHHHHHHHHHHCTTCCCCCCCCSC
T ss_pred             EEEEEecCCCccc--C--------------cccCCHHHHhheeEEEEcC---CCCHHHHHHHHHhccccCcchhccccCC
Confidence            6777788853100  0              0137899999997679999   889999999988776320          


Q ss_pred             ---HHHhccCCCccccCCHHHHHHHHhc
Q 036633          415 ---KRRNNDSKAVIVCPSTSALVHIASN  439 (550)
Q Consensus       415 ---~~~l~~~~~~~l~~~~~a~~~L~~~  439 (550)
                         ...+..... .+.+++++++++++.
T Consensus       212 ~~~i~~~~~~~~-~v~~~~~~~~~i~~~  238 (331)
T 2r44_A          212 KNDVLEIRNEIN-KVTISESLEKYIIEL  238 (331)
T ss_dssp             HHHHHHHHHHHH-TCBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-cCCCCHHHHHHHHHH
Confidence               000000001 347899999999764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.69  E-value=1.2e-15  Score=150.95  Aligned_cols=197  Identities=20%  Similarity=0.217  Sum_probs=125.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +.++|++.+++.+.+.+.....    ...|.   ..|.++||+||||||||++|+++|+.+..      +++.++|+.+.
T Consensus         6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~---~~~~~vll~G~~GtGKT~la~~la~~~~~------~~~~~~~~~~~   76 (262)
T 2qz4_A            6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGA---KVPKGALLLGPPGCGKTLLAKAVATEAQV------PFLAMAGAEFV   76 (262)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCCC------C---CCCCEEEEESCTTSSHHHHHHHHHHHHTC------CEEEEETTTTS
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCC---CCCceEEEECCCCCCHHHHHHHHHHHhCC------CEEEechHHHH
Confidence            5689999999888776643200    00111   23378999999999999999999999877      99999999875


Q ss_pred             chhh---hhhHHhHHHHHHHhCCCCeEEecccccc------------CHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          282 ELES---IKHFFDSLAALVKKRPYSVVLFDKIEKA------------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       282 ~~~~---~s~liG~lt~al~~~p~~VlllDEIeka------------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                      ....   ...+-+.+..+ .....+||||||++.+            +...+..|.+++..-  ..+.      ...+++
T Consensus        77 ~~~~~~~~~~~~~~~~~a-~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~------~~~~~~  147 (262)
T 2qz4_A           77 EVIGGLGAARVRSLFKEA-RARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEM--DGMG------TTDHVI  147 (262)
T ss_dssp             SSSTTHHHHHHHHHHHHH-HHTCSEEEEEECC-------------------CHHHHHHHHHH--HTCC------TTCCEE
T ss_pred             hhccChhHHHHHHHHHHH-HhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHh--hCcC------CCCCEE
Confidence            4321   11111233333 3344589999999998            333444444444321  0010      114678


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV  424 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~  424 (550)
                      +|+|||..                     ..+++++++  |++..+.|.   +++.++...|+..++..       .+. 
T Consensus       148 vi~~tn~~---------------------~~ld~~l~~~~R~~~~i~i~---~p~~~~r~~il~~~~~~-------~~~-  195 (262)
T 2qz4_A          148 VLASTNRA---------------------DILDGALMRPGRLDRHVFID---LPTLQERREIFEQHLKS-------LKL-  195 (262)
T ss_dssp             EEEEESCG---------------------GGGGSGGGSTTSCCEEEECC---SCCHHHHHHHHHHHHHH-------TTC-
T ss_pred             EEecCCCh---------------------hhcCHHHhcCCcCCeEEEeC---CcCHHHHHHHHHHHHHh-------CCC-
Confidence            99999964                     245677887  999999999   88999999999888754       333 


Q ss_pred             cccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          425 IVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       425 ~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        ..+++. ...|+....   |.++|.|+.+++.
T Consensus       196 --~~~~~~~~~~l~~~~~---g~~~~~l~~l~~~  224 (262)
T 2qz4_A          196 --TQSSTFYSQRLAELTP---GFSGADIANICNE  224 (262)
T ss_dssp             --CBTHHHHHHHHHHTCT---TCCHHHHHHHHHH
T ss_pred             --CcchhhHHHHHHHHCC---CCCHHHHHHHHHH
Confidence              444443 466776432   3355888888876

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.68  E-value=2.7e-16  Score=170.19  Aligned_cols=223  Identities=15%  Similarity=0.136  Sum_probs=151.8

Q ss_pred             HHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633          194 EERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI  273 (550)
Q Consensus       194 ~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li  273 (550)
                      .+.+..+...+...|+||++++..+..++...             +++||+||||||||++|++||..+..    ..+|.
T Consensus        10 ~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~-------------~~VLL~GpPGtGKT~LAraLa~~l~~----~~~f~   72 (500)
T 3nbx_X           10 AERISRLSSSLEKGLYERSHAIRLCLLAALSG-------------ESVFLLGPPGIAKSLIARRLKFAFQN----ARAFE   72 (500)
T ss_dssp             HHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHT-------------CEEEEECCSSSSHHHHHHHGGGGBSS----CCEEE
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-------------CeeEeecCchHHHHHHHHHHHHHHhh----hhHHH
Confidence            35678889999999999999999887777644             58999999999999999999998743    44777


Q ss_pred             EEecCCCCchhhhhhHHhH--H-----HHHHHh-C-----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEe
Q 036633          274 HFDMGNYTELESIKHFFDS--L-----AALVKK-R-----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF  340 (550)
Q Consensus       274 ~id~s~~~~~~~~s~liG~--l-----t~al~~-~-----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~v  340 (550)
                      .+++...    +.+.++|.  .     .+.+.. .     ..+|||||||+++++.+++.|++++++|  . ++..|...
T Consensus        73 ~~~~~~~----t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~--~-v~i~G~~~  145 (500)
T 3nbx_X           73 YLMTRFS----TPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINER--Q-FRNGAHVE  145 (500)
T ss_dssp             EECCTTC----CHHHHHCCBC----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSS--E-EECSSSEE
T ss_pred             HHHHhcC----CHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHH--h-ccCCCCcC
Confidence            7776532    12455651  1     111111 1     1358999999999999999999999999  6 55555556


Q ss_pred             ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCH-HHHHHHHHHHH--------
Q 036633          341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLD-TTRLLLREWAC--------  411 (550)
Q Consensus       341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~-e~i~~I~~~~l--------  411 (550)
                      .....++|+|||.-.+                  ...|.+++++||...+.+.   +++. ++...|+....        
T Consensus       146 ~~~~~~iI~ATN~lpe------------------~~~~~~aLldRF~~~i~v~---~p~~~ee~~~IL~~~~~~~~~~~~  204 (500)
T 3nbx_X          146 KIPMRLLVAASNELPE------------------ADSSLEALYDRMLIRLWLD---KVQDKANFRSMLTSQQDENDNPVP  204 (500)
T ss_dssp             ECCCCEEEEEESSCCC------------------TTCTTHHHHTTCCEEEECC---SCCCHHHHHHHHTCCCCTTSCCSC
T ss_pred             CcchhhhhhccccCCC------------------ccccHHHHHHHHHHHHHHH---HhhhhhhHHHHHhcccccCCCCCC
Confidence            6666567888884221                  1357789999996667776   6665 66677765432        


Q ss_pred             ----------HHHHHHhccCCCccccCCHHHHHHHHhcC-----c-ccCCCcccHHHHHHcchhhHHHHHhh
Q 036633          412 ----------EETKRRNNDSKAVIVCPSTSALVHIASNA-----A-RKYGQNGEGLKRWMDQRPSADHVIDK  467 (550)
Q Consensus       412 ----------~~~~~~l~~~~~~~l~~~~~a~~~L~~~~-----~-~~~GaN~R~L~~~i~~~~la~~~l~~  467 (550)
                                ..+...+  .   .+.+++++.+++++..     . ...|.+.|.+..++.. .-+.+.+.|
T Consensus       205 ~~~~~~~e~l~~~~~~~--~---~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~-A~A~A~l~g  270 (500)
T 3nbx_X          205 DALQVTDEEYERWQKEI--G---EITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRL-LQASAFFSG  270 (500)
T ss_dssp             TTTSBCHHHHHHHHHHH--T---TCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHH-HHHHHHHTT
T ss_pred             ccceecHHHHHHHHhcC--C---cccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHH-HHHHHhhcC
Confidence                      1111111  2   3478999999998643     1 1123355877777764 334444544

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.68  E-value=4.1e-16  Score=150.53  Aligned_cols=183  Identities=20%  Similarity=0.231  Sum_probs=132.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------  267 (550)
                      ..++|++.+++.+...+...   +       .|.+++|+||+|||||++|+.+++.+.....                  
T Consensus        23 ~~~~g~~~~~~~l~~~l~~~---~-------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (250)
T 1njg_A           23 ADVVGQEHVLTALANGLSLG---R-------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG   92 (250)
T ss_dssp             GGCCSCHHHHHHHHHHHHHT---C-------CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTT
T ss_pred             HHHhCcHHHHHHHHHHHHcC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhcc
Confidence            46899999999998888754   1       2368999999999999999999998754100                  


Q ss_pred             CCCceeEEecCCCCchhhhhhHHhHHHHHHHh-------CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEe
Q 036633          268 NDNHLIHFDMGNYTELESIKHFFDSLAALVKK-------RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAF  340 (550)
Q Consensus       268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~~-------~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~v  340 (550)
                      ....++.++.+....       ...+...+..       ....||+|||++.+++..++.|++.+++.  .         
T Consensus        93 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~--~---------  154 (250)
T 1njg_A           93 RFVDLIEIDAASRTK-------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP--P---------  154 (250)
T ss_dssp             CCSSEEEEETTCGGG-------HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC--C---------
T ss_pred             CCcceEEecCccccc-------HHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC--C---------
Confidence            000123333222111       1112222221       22469999999999999999999999875  4         


Q ss_pred             ecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          341 DLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       341 d~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                        .++++|+|||..                     ..+.+.+.+|+ ..+.|.   |++.+++..++...+..       
T Consensus       155 --~~~~~i~~t~~~---------------------~~~~~~l~~r~-~~i~l~---~l~~~e~~~~l~~~~~~-------  200 (250)
T 1njg_A          155 --EHVKFLLATTDP---------------------QKLPVTILSRC-LQFHLK---ALDVEQIRHQLEHILNE-------  200 (250)
T ss_dssp             --TTEEEEEEESCG---------------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHHHH-------
T ss_pred             --CceEEEEEeCCh---------------------HhCCHHHHHHh-hhccCC---CCCHHHHHHHHHHHHHh-------
Confidence              456788888752                     35677889998 789999   99999999998887753       


Q ss_pred             CCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .+.   .+++++++.|++.+-   | |.|.+.+.++.
T Consensus       201 ~~~---~~~~~~~~~l~~~~~---G-~~~~~~~~~~~  230 (250)
T 1njg_A          201 EHI---AHEPRALQLLARAAE---G-SLRDALSLTDQ  230 (250)
T ss_dssp             TTC---CBCHHHHHHHHHHHT---T-CHHHHHHHHHH
T ss_pred             cCC---CCCHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            444   789999999988652   6 88988888875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.68  E-value=4.3e-16  Score=158.36  Aligned_cols=188  Identities=22%  Similarity=0.310  Sum_probs=131.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..|+|++.+++.+...+...+.     ...|+.   .|..+||+||||||||++|+++|..+..      +++.++++++
T Consensus        15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~---~~~~vLL~Gp~GtGKT~la~ala~~~~~------~~i~v~~~~l   85 (301)
T 3cf0_A           15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT---PSKGVLFYGPPGCGKTLLAKAIANECQA------NFISIKGPEL   85 (301)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC---CCSEEEEECSSSSSHHHHHHHHHHHTTC------EEEEECHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC---CCceEEEECCCCcCHHHHHHHHHHHhCC------CEEEEEhHHH
Confidence            4599999999999988865310     012221   2268999999999999999999999866      9999998775


Q ss_pred             CchhhhhhHHh--------HHHHHHHhCCCCeEEeccccccCHH--------------HHHHHHHhhhhccccccccCCe
Q 036633          281 TELESIKHFFD--------SLAALVKKRPYSVVLFDKIEKANSS--------------ILNLLLKILKTDFNRKATRGIA  338 (550)
Q Consensus       281 ~~~~~~s~liG--------~lt~al~~~p~~VlllDEIeka~~~--------------v~~~Ll~~ld~g~~~~l~d~g~  338 (550)
                      .     +.++|        .+..+ +....+|||||||+.+.+.              +++.|+..++.-  .       
T Consensus        86 ~-----~~~~g~~~~~~~~~f~~a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~--~-------  150 (301)
T 3cf0_A           86 L-----TMWFGESEANVREIFDKA-RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM--S-------  150 (301)
T ss_dssp             H-----HHHHTTCTTHHHHHHHHH-HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS--C-------
T ss_pred             H-----hhhcCchHHHHHHHHHHH-HhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc--c-------
Confidence            3     23333        33333 3334489999999976543              578888888743  1       


Q ss_pred             EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHH
Q 036633          339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKR  416 (550)
Q Consensus       339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~  416 (550)
                        .-.+++||+|||..                     ..++|+++.  |++.+|.|.   +++.++...|+..++..   
T Consensus       151 --~~~~v~vi~atn~~---------------------~~ld~al~r~gRf~~~i~i~---~p~~~~r~~il~~~l~~---  201 (301)
T 3cf0_A          151 --TKKNVFIIGATNRP---------------------DIIDPAILRPGRLDQLIYIP---LPDEKSRVAILKANLRK---  201 (301)
T ss_dssp             --TTSSEEEEEEESCG---------------------GGSCGGGGSTTSSCEEEECC---CCCHHHHHHHHHHHHTT---
T ss_pred             --CCCCEEEEEecCCc---------------------cccChHHhcCCccceEEecC---CcCHHHHHHHHHHHHcc---
Confidence              11568899999974                     356788887  999999999   88999999988777632   


Q ss_pred             HhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          417 RNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       417 ~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                          .+. .-.++.   +.|+...+   |.+|++|++++++
T Consensus       202 ----~~~-~~~~~~---~~la~~~~---g~sg~dl~~l~~~  231 (301)
T 3cf0_A          202 ----SPV-AKDVDL---EFLAKMTN---GFSGADLTEICQR  231 (301)
T ss_dssp             ----SCB-CSSCCH---HHHHHTCS---SCCHHHHHHHHHH
T ss_pred             ----CCC-CccchH---HHHHHHcC---CCCHHHHHHHHHH
Confidence                222 223333   34554332   3255799999987

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.67  E-value=8.5e-16  Score=154.19  Aligned_cols=197  Identities=20%  Similarity=0.256  Sum_probs=134.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..++|++.+++.+...+...+.     ...|+   ..|..+||+||||||||++|+++|+.+..      +++.++++++
T Consensus        17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~ll~G~~GtGKT~la~~la~~~~~------~~~~v~~~~~   87 (285)
T 3h4m_A           17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGI---EPPKGILLYGPPGTGKTLLAKAVATETNA------TFIRVVGSEL   87 (285)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC---CCCSEEEEESSSSSSHHHHHHHHHHHTTC------EEEEEEGGGG
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC---CCCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEehHHH
Confidence            4589999999999888865310     01122   12378999999999999999999999877      9999999887


Q ss_pred             Cchhh--hhhHHhHHHHHHHhCCCCeEEecccccc-----------CHHHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633          281 TELES--IKHFFDSLAALVKKRPYSVVLFDKIEKA-----------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLI  347 (550)
Q Consensus       281 ~~~~~--~s~liG~lt~al~~~p~~VlllDEIeka-----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii  347 (550)
                      .....  ....+..+.........+||||||++.+           ++..+..|+++++..  ..+..      -.+++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~------~~~~~v  159 (285)
T 3h4m_A           88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM--DGFDA------RGDVKI  159 (285)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH--HTTCS------SSSEEE
T ss_pred             HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh--hCCCC------CCCEEE
Confidence            54321  1111222233334444489999999987           667788888887643  10111      146789


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                      |+|||..                     ..++|.++.  |++.++.|.   +++.++...|+...+..       .+. .
T Consensus       160 I~ttn~~---------------------~~l~~~l~~~~Rf~~~i~~~---~p~~~~r~~il~~~~~~-------~~~-~  207 (285)
T 3h4m_A          160 IGATNRP---------------------DILDPAILRPGRFDRIIEVP---APDEKGRLEILKIHTRK-------MNL-A  207 (285)
T ss_dssp             EEECSCG---------------------GGBCHHHHSTTSEEEEEECC---CCCHHHHHHHHHHHHTT-------SCB-C
T ss_pred             EEeCCCc---------------------hhcCHHHcCCCcCCeEEEEC---CCCHHHHHHHHHHHHhc-------CCC-C
Confidence            9999963                     356788887  999899999   99999999998876522       222 1


Q ss_pred             ccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          426 VCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ...   ....|+....   |.++|.++.+++.
T Consensus       208 ~~~---~~~~l~~~~~---g~~~~~i~~l~~~  233 (285)
T 3h4m_A          208 EDV---NLEEIAKMTE---GCVGAELKAICTE  233 (285)
T ss_dssp             TTC---CHHHHHHHCT---TCCHHHHHHHHHH
T ss_pred             CcC---CHHHHHHHcC---CCCHHHHHHHHHH
Confidence            122   2445554332   3366899998886

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.67  E-value=5e-16  Score=157.92  Aligned_cols=188  Identities=12%  Similarity=0.159  Sum_probs=138.2

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++||+.+++.+...+...           ++.+++|+||+|+|||++|+.+++.+.+.+ ...+++.+|++.......
T Consensus        21 ~~~~g~~~~~~~l~~~l~~~-----------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~   88 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKDG-----------NMPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGIDV   88 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHSC-----------CCCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHHH
T ss_pred             HHHHCCHHHHHHHHHHHHcC-----------CCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCccccChHH
Confidence            46899999999998888754           333499999999999999999999974300 012577888776533222


Q ss_pred             hhhHHhHHHHH---HHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633          286 IKHFFDSLAAL---VKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM  362 (550)
Q Consensus       286 ~s~liG~lt~a---l~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~  362 (550)
                      +..++..+...   ....++.||+|||++.++++.++.|++++++.  .           .++++|++||..        
T Consensus        89 i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~--~-----------~~~~~il~~~~~--------  147 (323)
T 1sxj_B           89 VRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY--S-----------NSTRFAFACNQS--------  147 (323)
T ss_dssp             HHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT--T-----------TTEEEEEEESCG--------
T ss_pred             HHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc--C-----------CCceEEEEeCCh--------
Confidence            22222211100   00223579999999999999999999999987  4           567788888752        


Q ss_pred             hhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc
Q 036633          363 LTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAAR  442 (550)
Q Consensus       363 ~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~  442 (550)
                                   ..+.|.+.+|+ .++.|.   |++.+++..++...+..       .|+   .+++++++.|+..+. 
T Consensus       148 -------------~~l~~~l~sr~-~~i~~~---~~~~~~~~~~l~~~~~~-------~~~---~~~~~~~~~l~~~~~-  199 (323)
T 1sxj_B          148 -------------NKIIEPLQSQC-AILRYS---KLSDEDVLKRLLQIIKL-------EDV---KYTNDGLEAIIFTAE-  199 (323)
T ss_dssp             -------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHHHH-------HTC---CBCHHHHHHHHHHHT-
T ss_pred             -------------hhchhHHHhhc-eEEeec---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHcC-
Confidence                         35678899999 599999   99999999998877743       344   689999999998542 


Q ss_pred             cCCCcccHHHHHHcc
Q 036633          443 KYGQNGEGLKRWMDQ  457 (550)
Q Consensus       443 ~~GaN~R~L~~~i~~  457 (550)
                        | |.|.+.+.++.
T Consensus       200 --G-~~r~a~~~l~~  211 (323)
T 1sxj_B          200 --G-DMRQAINNLQS  211 (323)
T ss_dssp             --T-CHHHHHHHHHH
T ss_pred             --C-CHHHHHHHHHH
Confidence              6 77877777765

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.66  E-value=1.3e-16  Score=159.46  Aligned_cols=199  Identities=19%  Similarity=0.148  Sum_probs=128.2

Q ss_pred             HhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCC-cCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          200 VQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       200 l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~-~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      +...+...++|++.+++.+.......   ...+.. ...+ .++||+||||||||++|+++|+.+..      +++.+++
T Consensus        27 l~~~~~~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~------~~~~i~~   97 (272)
T 1d2n_A           27 YASYIMNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF------PFIKICS   97 (272)
T ss_dssp             STTTCTTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC------SEEEEEC
T ss_pred             HHHHHhcCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC------CEEEEeC
Confidence            34455677999999988887742111   111111 1234 89999999999999999999999866      8999998


Q ss_pred             CCCCchhhhhhHHh---HHHHHHHhCCCCeEEecccccc----------CHHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633          278 GNYTELESIKHFFD---SLAALVKKRPYSVVLFDKIEKA----------NSSILNLLLKILKTDFNRKATRGIAAFDLTN  344 (550)
Q Consensus       278 s~~~~~~~~s~liG---~lt~al~~~p~~VlllDEIeka----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~  344 (550)
                      ++...........+   .+.+.....+.+|||||||+.+          ...+++.|+..++..  .   .     .-.+
T Consensus        98 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~--~---~-----~~~~  167 (272)
T 1d2n_A           98 PDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKA--P---P-----QGRK  167 (272)
T ss_dssp             GGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCC--C---S-----TTCE
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCc--c---C-----CCCC
Confidence            75322111111122   2222233455689999999987          556667777666532  1   0     1135


Q ss_pred             eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCCh-hhhhhccceeEecCCCCCCH-HHHHHHHHHHHHHHHHHhccCC
Q 036633          345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKP-SLLKLLDKLVVIDLAVPLLD-TTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p-~ll~Rid~ii~f~~~~pL~~-e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                      ++||+|||....                     +.+ .+.+|++..|.|+   |++. +++..++...          . 
T Consensus       168 ~~ii~ttn~~~~---------------------l~~~~l~~rf~~~i~~p---~l~~r~~i~~i~~~~----------~-  212 (272)
T 1d2n_A          168 LLIIGTTSRKDV---------------------LQEMEMLNAFSTTIHVP---NIATGEQLLEALELL----------G-  212 (272)
T ss_dssp             EEEEEEESCHHH---------------------HHHTTCTTTSSEEEECC---CEEEHHHHHHHHHHH----------T-
T ss_pred             EEEEEecCChhh---------------------cchhhhhcccceEEcCC---CccHHHHHHHHHHhc----------C-
Confidence            678999986421                     112 4678887888888   8887 6766665431          1 


Q ss_pred             CccccCCHHHHHHHHhcC--cccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSALVHIASNA--ARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~--~~~~GaN~R~L~~~i~~  457 (550)
                          .++++++..|+...  |+..| |+|.+.++++.
T Consensus       213 ----~~~~~~~~~l~~~~~g~~~~g-~ir~l~~~l~~  244 (272)
T 1d2n_A          213 ----NFKDKERTTIAQQVKGKKVWI-GIKKLLMLIEM  244 (272)
T ss_dssp             ----CSCHHHHHHHHHHHTTSEEEE-CHHHHHHHHHH
T ss_pred             ----CCCHHHHHHHHHHhcCCCccc-cHHHHHHHHHH
Confidence                35788888888743  33345 77988888886

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.66  E-value=1.2e-15  Score=158.66  Aligned_cols=186  Identities=20%  Similarity=0.224  Sum_probs=135.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------  267 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------  267 (550)
                      ..++||+++++.+..++...   +       .|..++|+||+|||||++|+++++.+.....                  
T Consensus        16 ~~~vg~~~~~~~L~~~l~~~---~-------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   85 (373)
T 1jr3_A           16 ADVVGQEHVLTALANGLSLG---R-------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG   85 (373)
T ss_dssp             TTSCSCHHHHHHHHHHHHHT---C-------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTS
T ss_pred             hhccCcHHHHHHHHHHHHhC---C-------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcc
Confidence            45999999999999888754   1       2368899999999999999999999865110                  


Q ss_pred             CCCceeEEecCCCCchhhhhhHHhHHHHHHHhC----CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633          268 NDNHLIHFDMGNYTELESIKHFFDSLAALVKKR----PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       268 ~~~~li~id~s~~~~~~~~s~liG~lt~al~~~----p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      ....++.++.+.......    +..+.+.+...    .+.||+|||++.++++.++.|++.+++.  .           .
T Consensus        86 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~--~-----------~  148 (373)
T 1jr3_A           86 RFVDLIEIDAASRTKVED----TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP--P-----------E  148 (373)
T ss_dssp             CCSSCEEEETTCSCCSSC----HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC--C-----------S
T ss_pred             CCCceEEecccccCCHHH----HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC--C-----------C
Confidence            000234444332111111    11333333332    2469999999999999999999999876  4           4


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      ++++|++||..                     ..+.+.+.+|+ .++.|.   |++.+++..++...+..       .|+
T Consensus       149 ~~~~Il~~~~~---------------------~~l~~~l~sr~-~~i~~~---~l~~~~~~~~l~~~~~~-------~~~  196 (373)
T 1jr3_A          149 HVKFLLATTDP---------------------QKLPVTILSRC-LQFHLK---ALDVEQIRHQLEHILNE-------EHI  196 (373)
T ss_dssp             SEEEEEEESCG---------------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHHHH-------HTC
T ss_pred             ceEEEEEeCCh---------------------HhCcHHHHhhe-eEeeCC---CCCHHHHHHHHHHHHHH-------cCC
Confidence            67788888742                     35678899999 799999   99999999998887753       344


Q ss_pred             ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                         .+++++++.|+..+-   | |.|.+.+.+++
T Consensus       197 ---~~~~~a~~~l~~~~~---G-~~r~~~~~l~~  223 (373)
T 1jr3_A          197 ---AHEPRALQLLARAAE---G-SLRDALSLTDQ  223 (373)
T ss_dssp             ---CBCHHHHHHHHHHSS---S-CHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHCC---C-CHHHHHHHHHH
Confidence               789999999998642   6 77888887764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.66  E-value=1.4e-15  Score=157.00  Aligned_cols=186  Identities=17%  Similarity=0.279  Sum_probs=135.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCC--CceeEEecCCCCch
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDND--NHLIHFDMGNYTEL  283 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~--~~li~id~s~~~~~  283 (550)
                      ..++||+++++.+...+...           +..+++|+||||||||++|+++|+.+++   ..  ..++.+|.+.....
T Consensus        25 ~~~~g~~~~~~~L~~~i~~g-----------~~~~~ll~Gp~G~GKTtla~~la~~l~~---~~~~~~~~~~~~~~~~~~   90 (340)
T 1sxj_C           25 DEVYGQNEVITTVRKFVDEG-----------KLPHLLFYGPPGTGKTSTIVALAREIYG---KNYSNMVLELNASDDRGI   90 (340)
T ss_dssp             GGCCSCHHHHHHHHHHHHTT-----------CCCCEEEECSSSSSHHHHHHHHHHHHHT---TSHHHHEEEECTTSCCSH
T ss_pred             HHhcCcHHHHHHHHHHHhcC-----------CCceEEEECCCCCCHHHHHHHHHHHHcC---CCccceEEEEcCcccccH
Confidence            45889999999988888755           3335999999999999999999999876   22  13566776654332


Q ss_pred             hhhhhHHhHHHHHH--HhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633          284 ESIKHFFDSLAALV--KKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV  361 (550)
Q Consensus       284 ~~~s~liG~lt~al--~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~  361 (550)
                      ..+...++.+.+..  ....+.|+++||++.++.+.++.|++++++.  .           .++.+|+++|..       
T Consensus        91 ~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~--~-----------~~~~~il~~n~~-------  150 (340)
T 1sxj_C           91 DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY--T-----------KNTRFCVLANYA-------  150 (340)
T ss_dssp             HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT--T-----------TTEEEEEEESCG-------
T ss_pred             HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC--C-----------CCeEEEEEecCc-------
Confidence            22222333222110  0123579999999999999999999999987  5           567788888853       


Q ss_pred             hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc
Q 036633          362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA  441 (550)
Q Consensus       362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~  441 (550)
                                    ..+.|.+.+|| .++.|.   |++.+++..++...+.       ..++   .+++++.++++..+-
T Consensus       151 --------------~~i~~~i~sR~-~~~~~~---~l~~~~~~~~l~~~~~-------~~~~---~i~~~~~~~i~~~s~  202 (340)
T 1sxj_C          151 --------------HKLTPALLSQC-TRFRFQ---PLPQEAIERRIANVLV-------HEKL---KLSPNAEKALIELSN  202 (340)
T ss_dssp             --------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHHH-------TTTC---CBCHHHHHHHHHHHT
T ss_pred             --------------cccchhHHhhc-eeEecc---CCCHHHHHHHHHHHHH-------HcCC---CCCHHHHHHHHHHcC
Confidence                          35678899999 589999   9999999888877663       2444   789999999987542


Q ss_pred             ccCCCcccHHHHHHcc
Q 036633          442 RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       442 ~~~GaN~R~L~~~i~~  457 (550)
                         | +.|.+.+.++.
T Consensus       203 ---G-~~r~~~~~l~~  214 (340)
T 1sxj_C          203 ---G-DMRRVLNVLQS  214 (340)
T ss_dssp             ---T-CHHHHHHHTTT
T ss_pred             ---C-CHHHHHHHHHH
Confidence               5 56766666654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.65  E-value=4e-17  Score=147.66  Aligned_cols=140  Identities=14%  Similarity=0.119  Sum_probs=100.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      -.++|++.++..+...+...   .      ..+.+++|+||||||||++|++++..+     .  +++.+||+.+.+.. 
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~---~------~~~~~vll~G~~GtGKt~lA~~i~~~~-----~--~~~~~~~~~~~~~~-   66 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAA---A------KRTSPVFLTGEAGSPFETVARYFHKNG-----T--PWVSPARVEYLIDM-   66 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHH---H------TCSSCEEEEEETTCCHHHHHGGGCCTT-----S--CEECCSSTTHHHHC-
T ss_pred             cCceeCCHHHHHHHHHHHHH---h------CCCCcEEEECCCCccHHHHHHHHHHhC-----C--CeEEechhhCChHh-
Confidence            35899999999999998865   1      123579999999999999999999754     2  89999998864322 


Q ss_pred             hhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhh
Q 036633          286 IKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTA  365 (550)
Q Consensus       286 ~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~  365 (550)
                         ..|    .+....+++||||||+.++++.|..|+++++++  .          -.++.+|+|||.+.... .     
T Consensus        67 ---~~~----~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~--~----------~~~~~iI~~tn~~~~~~-~-----  121 (143)
T 3co5_A           67 ---PME----LLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKA--E----------RCRVRVIASCSYAAGSD-G-----  121 (143)
T ss_dssp             ---HHH----HHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHH--T----------TTTCEEEEEEEECTTTC-------
T ss_pred             ---hhh----HHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhC--C----------CCCEEEEEecCCCHHHH-H-----
Confidence               222    233345689999999999999999999999987  3          13466899999764332 1     


Q ss_pred             hHhhHHHHhccCCChhhhhhccceeEecCCCCCC
Q 036633          366 TYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL  399 (550)
Q Consensus       366 ~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~  399 (550)
                               .. |+++|++|+.. +.+. .|||.
T Consensus       122 ---------~~-~~~~L~~rl~~-~~i~-lPpLr  143 (143)
T 3co5_A          122 ---------IS-CEEKLAGLFSE-SVVR-IPPLS  143 (143)
T ss_dssp             ----------C-HHHHHHHHSSS-EEEE-ECCCC
T ss_pred             ---------hC-ccHHHHHHhcC-cEEe-CCCCC
Confidence                     24 88999999853 3333 22763

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.63  E-value=4.6e-15  Score=146.85  Aligned_cols=195  Identities=19%  Similarity=0.226  Sum_probs=127.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCC--cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSS--RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~--~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~  283 (550)
                      +.++|++.+++.+...+..... ..-+..  ...|..++|+||||||||++|+++|..+..      +++.++++.+.+.
T Consensus        12 ~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~------~~~~i~~~~~~~~   84 (257)
T 1lv7_A           12 ADVAGCDEAKEEVAELVEYLRE-PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV------PFFTISGSDFVEM   84 (257)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHC-GGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC------CEEEECSCSSTTS
T ss_pred             HHhcCcHHHHHHHHHHHHHHhC-HHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC------CEEEEeHHHHHHH
Confidence            4689999999888776543200 000100  112357999999999999999999999876      8999999887543


Q ss_pred             hh--hhhHHhHHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633          284 ES--IKHFFDSLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLI  347 (550)
Q Consensus       284 ~~--~s~liG~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii  347 (550)
                      ..  ....++.+.+.......+++|||||+.+.+              ..++.++..++.-  .         .-.++++
T Consensus        85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~---------~~~~~~v  153 (257)
T 1lv7_A           85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF--E---------GNEGIIV  153 (257)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC--C---------SSSCEEE
T ss_pred             hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc--c---------cCCCEEE
Confidence            21  011122222233334447999999986643              4566677766532  1         1145789


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                      |+|||..                     ..++|.++.  |++..+.|.   +++.++...|+..++.+       .    
T Consensus       154 I~~tn~~---------------------~~l~~~l~r~~rf~~~i~i~---~P~~~~r~~il~~~~~~-------~----  198 (257)
T 1lv7_A          154 IAATNRP---------------------DVLDPALLRPGRFDRQVVVG---LPDVRGREQILKVHMRR-------V----  198 (257)
T ss_dssp             EEEESCT---------------------TTSCGGGGSTTSSCEEEECC---CCCHHHHHHHHHHHHTT-------S----
T ss_pred             EEeeCCc---------------------hhCCHHHcCCCcCCeEEEeC---CCCHHHHHHHHHHHHhc-------C----
Confidence            9999974                     346677775  999899998   77888888888766532       2    


Q ss_pred             ccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          426 VCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       426 l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                       .+++++ ...++. .++  |.|+|.|+++++.
T Consensus       199 -~l~~~~~~~~la~-~~~--G~~~~dl~~l~~~  227 (257)
T 1lv7_A          199 -PLAPDIDAAIIAR-GTP--GFSGADLANLVNE  227 (257)
T ss_dssp             -CBCTTCCHHHHHH-TCT--TCCHHHHHHHHHH
T ss_pred             -CCCccccHHHHHH-HcC--CCCHHHHHHHHHH
Confidence             222333 445554 333  5577999999996

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.63  E-value=1.5e-15  Score=164.31  Aligned_cols=193  Identities=18%  Similarity=0.263  Sum_probs=136.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..++|++.+++.+...+...+.     ...|.   ..|..+||+||||||||++|+++|..+..      +|+.+||+++
T Consensus       204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~---~~~~~vLL~GppGtGKT~lAraia~~~~~------~fv~vn~~~l  274 (489)
T 3hu3_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGV---KPPRGILLYGPPGTGKTLIARAVANETGA------FFFLINGPEI  274 (489)
T ss_dssp             GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCEEEEECSTTSSHHHHHHHHHHHCSS------EEEEEEHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC---CCCCcEEEECcCCCCHHHHHHHHHHHhCC------CEEEEEchHh
Confidence            4699999999999888865310     01111   12378999999999999999999999866      9999999876


Q ss_pred             Cchh---hhhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          281 TELE---SIKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       281 ~~~~---~~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                      ....   ....+.+.|..+....| +|||||||+.+.           ..+++.|+..++.-  . .        -.+++
T Consensus       275 ~~~~~g~~~~~~~~~f~~A~~~~p-~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~--~-~--------~~~v~  342 (489)
T 3hu3_A          275 MSKLAGESESNLRKAFEEAEKNAP-AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL--K-Q--------RAHVI  342 (489)
T ss_dssp             HTSCTTHHHHHHHHHHHHHHHTCS-EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS--C-T--------TSCEE
T ss_pred             hhhhcchhHHHHHHHHHHHHhcCC-cEEEecchhhhccccccccchHHHHHHHHHHHHhhcc--c-c--------CCceE
Confidence            5331   12223335555555555 899999996554           47899999999854  2 1        14678


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV  424 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~  424 (550)
                      ||+|||..                     ..++|++.+  ||+..|.|.   +++.++...|+..++.         +. 
T Consensus       343 vIaaTn~~---------------------~~Ld~al~r~gRf~~~i~i~---~P~~~eR~~IL~~~~~---------~~-  388 (489)
T 3hu3_A          343 VMAATNRP---------------------NSIDPALRRFGRFDREVDIG---IPDATGRLEILQIHTK---------NM-  388 (489)
T ss_dssp             EEEEESCG---------------------GGBCGGGGSTTSSCEEEECC---CCCHHHHHHHHHHHTT---------TS-
T ss_pred             EEEecCCc---------------------cccCHHHhCCCcCceEEEeC---CCCHHHHHHHHHHHHh---------cC-
Confidence            99999974                     246778876  999899999   8899999999877652         12 


Q ss_pred             cccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .+..+ ..+..++....   |.+++.|..+++.
T Consensus       389 ~l~~~-~~l~~la~~t~---g~s~~dL~~L~~~  417 (489)
T 3hu3_A          389 KLADD-VDLEQVANETH---GHVGADLAALCSE  417 (489)
T ss_dssp             CBCTT-CCHHHHHHTCT---TCCHHHHHHHHHH
T ss_pred             CCcch-hhHHHHHHHcc---CCcHHHHHHHHHH
Confidence            22211 12455666433   3355889888886

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.62  E-value=6.4e-15  Score=150.93  Aligned_cols=167  Identities=16%  Similarity=0.163  Sum_probs=119.8

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhh---HHhHHHHHHHhCCCCeEEeccccccC
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH---FFDSLAALVKKRPYSVVLFDKIEKAN  314 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~---liG~lt~al~~~p~~VlllDEIeka~  314 (550)
                      +.+++|+||||||||++|+++++.+..   ...+++.++++.+........   ..+.+.+....  .+|||||||+.++
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vL~iDEi~~l~  111 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKK---RGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKS--VDLLLLDDVQFLS  111 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHH---TTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHT--CSEEEEECGGGGT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcC--CCEEEEcCccccc
Confidence            378999999999999999999999865   455899999877632111100   01133333332  4799999999988


Q ss_pred             H--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc--cee
Q 036633          315 S--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD--KLV  390 (550)
Q Consensus       315 ~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid--~ii  390 (550)
                      .  ..++.|+.+++.-  .   +       .+..+|+||+.....+                 ..+.+.|++|++  .++
T Consensus       112 ~~~~~~~~l~~~l~~~--~---~-------~~~~iii~~~~~~~~l-----------------~~l~~~L~sR~~~~~~i  162 (324)
T 1l8q_A          112 GKERTQIEFFHIFNTL--Y---L-------LEKQIILASDRHPQKL-----------------DGVSDRLVSRFEGGILV  162 (324)
T ss_dssp             TCHHHHHHHHHHHHHH--H---H-------TTCEEEEEESSCGGGC-----------------TTSCHHHHHHHHTSEEE
T ss_pred             CChHHHHHHHHHHHHH--H---H-------CCCeEEEEecCChHHH-----------------HHhhhHhhhcccCceEE
Confidence            6  7788888887643  1   1       1223556665443211                 357899999996  567


Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          391 VIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       391 ~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .|.   | +.+++..|+...+..       .++   .++++++++|+.++    | |+|.+.++++.
T Consensus       163 ~l~---~-~~~e~~~il~~~~~~-------~~~---~l~~~~l~~l~~~~----g-~~r~l~~~l~~  210 (324)
T 1l8q_A          163 EIE---L-DNKTRFKIIKEKLKE-------FNL---ELRKEVIDYLLENT----K-NVREIEGKIKL  210 (324)
T ss_dssp             ECC---C-CHHHHHHHHHHHHHH-------TTC---CCCHHHHHHHHHHC----S-SHHHHHHHHHH
T ss_pred             EeC---C-CHHHHHHHHHHHHHh-------cCC---CCCHHHHHHHHHhC----C-CHHHHHHHHHH
Confidence            888   8 999999999887743       444   78999999999853    6 88999999987

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.62  E-value=9.6e-17  Score=177.77  Aligned_cols=208  Identities=12%  Similarity=0.111  Sum_probs=127.8

Q ss_pred             CccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhh-cCCCC-cCCC-eeEEE
Q 036633          167 LAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAK-KGLSS-RRQL-GLFLF  243 (550)
Q Consensus       167 ~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~-~gl~~-~~~p-~~lLf  243 (550)
                      ..++++++.++...+.          +.+.+..+...+...|+||++++..+..++...   . ..+.+ ..++ .++||
T Consensus       266 ~~~t~~~~~~i~~~~~----------~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g---~~~~~~~~~~r~~~~vLL  332 (595)
T 3f9v_A          266 VIISEEDEKKIKDLAK----------DPWIRDRIISSIAPSIYGHWELKEALALALFGG---VPKVLEDTRIRGDIHILI  332 (595)
T ss_dssp             CCCTTSTHHHHHTTSS----------TTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCC---CCEETTTTEECCSCCEEE
T ss_pred             CCCCHHHHHHHHHHhh----------CcHHHHHHHHhhcchhcChHHHHHHHHHHHhCC---CcccccCCCcCCCcceEE
Confidence            3566677766654332          123356777889999999999887764444322   0 00011 1122 58999


Q ss_pred             eccCCCcHHHHHHHHHHHhccCCCCCCceeE----EecCCCCchhhhhhHHh-------HHHHHHHhCCCCeEEeccccc
Q 036633          244 AGPNCSGKAELAKAIANELYDNNDNDNHLIH----FDMGNYTELESIKHFFD-------SLAALVKKRPYSVVLFDKIEK  312 (550)
Q Consensus       244 ~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~----id~s~~~~~~~~s~liG-------~lt~al~~~p~~VlllDEIek  312 (550)
                      +||||||||++|+++|+.+.+      .+..    .+++.+.........-|       .+..    ..++|+|||||++
T Consensus       333 ~GppGtGKT~LAr~la~~~~r------~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~----A~~gil~IDEid~  402 (595)
T 3f9v_A          333 IGDPGTAKSQMLQFISRVAPR------AVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVL----ADGGIAVIDEIDK  402 (595)
T ss_dssp             EESSCCTHHHHHHSSSTTCSC------EECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHH----HSSSEECCTTTTC
T ss_pred             ECCCchHHHHHHHHHHHhCCC------ceecCCCccccccccceeeeccccccccccCCeeEe----cCCCcEEeehhhh
Confidence            999999999999999998765      2222    12222221111111111       3332    2458999999999


Q ss_pred             cCHHHHHHHHHhhhhccccccc--cCCeEeec-CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccce
Q 036633          313 ANSSILNLLLKILKTDFNRKAT--RGIAAFDL-TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKL  389 (550)
Q Consensus       313 a~~~v~~~Ll~~ld~g~~~~l~--d~g~~vd~-~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~i  389 (550)
                      +++++++.|+++|++|  . ++  ..|....+ .++.||+|||........   ..+   +..  .-.++++|++|||.+
T Consensus       403 l~~~~q~~Ll~~le~~--~-i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~---~~~---~~~--ni~l~~aLl~RFDl~  471 (595)
T 3f9v_A          403 MRDEDRVAIHEAMEQQ--T-VSIAKAGIVAKLNARAAVIAAGNPKFGRYIS---ERP---VSD--NINLPPTILSRFDLI  471 (595)
T ss_dssp             CCSHHHHHHHHHHHSS--S-EEEESSSSEEEECCCCEEEEEECCTTCCSCT---TSC---SCT--TTCSCSSSGGGCSCC
T ss_pred             CCHhHhhhhHHHHhCC--E-EEEecCCcEEEecCceEEEEEcCCcCCccCc---ccC---chh--ccCCCHHHHhhCeEE
Confidence            9999999999999999  5 54  22444333 568899999975210000   000   000  015789999999988


Q ss_pred             eEecCCCCCCHHHHHHHHHHHH
Q 036633          390 VVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       390 i~f~~~~pL~~e~i~~I~~~~l  411 (550)
                      +.+.   ++..++...|+.+.+
T Consensus       472 ~~~~---~~~~~e~~~i~~~il  490 (595)
T 3f9v_A          472 FILK---DQPGEQDRELANYIL  490 (595)
T ss_dssp             EEEC---CTTHHHHHHHHHHHH
T ss_pred             EEeC---CCCCHHHHHHHHHHH
Confidence            8887   666655555555444

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.61  E-value=9.2e-15  Score=157.12  Aligned_cols=192  Identities=25%  Similarity=0.330  Sum_probs=130.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +.|+|+++++..+.+.+.....    ...|+   .-|..++|+||||||||++|+++|..+..      +|+.++++++.
T Consensus        16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~---~~p~gvLL~GppGtGKT~Laraia~~~~~------~f~~is~~~~~   86 (476)
T 2ce7_A           16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGA---RMPKGILLVGPPGTGKTLLARAVAGEANV------PFFHISGSDFV   86 (476)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC---CCCSEEEEECCTTSSHHHHHHHHHHHHTC------CEEEEEGGGTT
T ss_pred             HHhCCcHHHHHHHHHHHHHhhChHHHhhcCC---CCCCeEEEECCCCCCHHHHHHHHHHHcCC------CeeeCCHHHHH
Confidence            4599999999888877654200    01122   13456999999999999999999999877      99999999886


Q ss_pred             chhh---hhhHHhHHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeecCC
Q 036633          282 ELES---IKHFFDSLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDLTN  344 (550)
Q Consensus       282 ~~~~---~s~liG~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~  344 (550)
                      +...   ..++.+.|..+....| +|||||||+.+.+              .+++.|+..++.-  .   .      -.+
T Consensus        87 ~~~~g~~~~~~r~lf~~A~~~~p-~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~--~---~------~~~  154 (476)
T 2ce7_A           87 ELFVGVGAARVRDLFAQAKAHAP-CIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF--D---S------KEG  154 (476)
T ss_dssp             TCCTTHHHHHHHHHHHHHHHTCS-EEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS--C---G------GGT
T ss_pred             HHHhcccHHHHHHHHHHHHhcCC-CEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc--C---C------CCC
Confidence            5321   1122224444444445 8999999998743              3677788777631  1   0      146


Q ss_pred             eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                      ++||+|||..                     ..++|+++  +|||..|.|.   +++.++...|+..++..       ..
T Consensus       155 viVIaaTn~~---------------------~~Ld~allR~gRFd~~i~i~---~Pd~~~R~~Il~~~~~~-------~~  203 (476)
T 2ce7_A          155 IIVMAATNRP---------------------DILDPALLRPGRFDKKIVVD---PPDMLGRKKILEIHTRN-------KP  203 (476)
T ss_dssp             EEEEEEESCG---------------------GGSCGGGGSTTSSCEEEECC---CCCHHHHHHHHHHHHTT-------SC
T ss_pred             EEEEEecCCh---------------------hhhchhhcccCcceeEeecC---CCCHHHHHHHHHHHHHh-------CC
Confidence            7899999974                     34667777  4999999999   88888888888766532       21


Q ss_pred             CccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +     ++++ ++.|+.. ++  |.++|+|.++++.
T Consensus       204 l-----~~~v~l~~la~~-t~--G~sgadL~~lv~~  231 (476)
T 2ce7_A          204 L-----AEDVNLEIIAKR-TP--GFVGADLENLVNE  231 (476)
T ss_dssp             B-----CTTCCHHHHHHT-CT--TCCHHHHHHHHHH
T ss_pred             C-----cchhhHHHHHHh-cC--CCcHHHHHHHHHH
Confidence            1     2222 5556653 33  5334899998886

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.61  E-value=1.1e-15  Score=170.05  Aligned_cols=210  Identities=15%  Similarity=0.153  Sum_probs=135.0

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC---
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT---  281 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~---  281 (550)
                      -..++||+.+++.+..++...             .+++|+||||||||++|++||..+..   .....+.+++....   
T Consensus        40 l~~i~G~~~~l~~l~~~i~~g-------------~~vll~Gp~GtGKTtlar~ia~~l~~---~~~~~~~~~~~~~~~~~  103 (604)
T 3k1j_A           40 IDQVIGQEHAVEVIKTAANQK-------------RHVLLIGEPGTGKSMLGQAMAELLPT---ETLEDILVFPNPEDENM  103 (604)
T ss_dssp             HHHCCSCHHHHHHHHHHHHTT-------------CCEEEECCTTSSHHHHHHHHHHTSCC---SSCEEEEEECCTTCTTS
T ss_pred             cceEECchhhHhhccccccCC-------------CEEEEEeCCCCCHHHHHHHHhccCCc---ccCCeEEEeCCcccccC
Confidence            356899999999988888754             48999999999999999999998865   32222222222111   


Q ss_pred             -----------------------------------------------------------chhhhhhHHhHH---------
Q 036633          282 -----------------------------------------------------------ELESIKHFFDSL---------  293 (550)
Q Consensus       282 -----------------------------------------------------------~~~~~s~liG~l---------  293 (550)
                                                                                 .......++|.+         
T Consensus       104 p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~  183 (604)
T 3k1j_A          104 PRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGG  183 (604)
T ss_dssp             CEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----
T ss_pred             CcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCC
Confidence                                                                       011233344411         


Q ss_pred             ----------HHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC-C----------eEeecCCeEEEEeCC
Q 036633          294 ----------AALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG-I----------AAFDLTNTLIIMTSD  352 (550)
Q Consensus       294 ----------t~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~-g----------~~vd~~~~iiI~TsN  352 (550)
                                ...+.....+++||||++.+++.+|+.|+++|++|  . ++.. +          ...--.++.||+|||
T Consensus       184 ~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~--~-~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn  260 (604)
T 3k1j_A          184 LGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEK--K-FPITGQSEMSSGAMVRTEPVPCDFVLVAAGN  260 (604)
T ss_dssp             CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHS--E-ECCBCSCTTSGGGGCBCSCEECCCEEEEEEC
T ss_pred             ccccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcC--c-EEecccccccccccCCCCccceeEEEEEecC
Confidence                      11223345579999999999999999999999999  4 4322 1          111113456999999


Q ss_pred             CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc---ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 036633          353 LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD---KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPS  429 (550)
Q Consensus       353 ~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid---~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~  429 (550)
                      ...                   ...|+|+|++||+   ..+.|.   +... +....+..++..+.+.+...+. ...++
T Consensus       261 ~~~-------------------~~~l~~~l~~R~~v~~i~i~l~---~~~~-~~~~~~~~~l~~~~~~~~~~~~-~~~ls  316 (604)
T 3k1j_A          261 LDT-------------------VDKMHPALRSRIRGYGYEVYMR---TTMP-DTIENRRKLVQFVAQEVKRDGK-IPHFT  316 (604)
T ss_dssp             HHH-------------------HHHSCHHHHHHHHHHSEEEECC---SEEE-CCHHHHHHHHHHHHHHHHHHCS-SCCBB
T ss_pred             HHH-------------------HhhcCHHHHHHhhccceEeecc---cccc-CCHHHHHHHHHHHHHHHhhccC-cccCC
Confidence            521                   1358999999996   356665   3322 2223333444444444433333 45889


Q ss_pred             HHHHHHHHhcCcccCC------CcccHHHHHHcc
Q 036633          430 TSALVHIASNAARKYG------QNGEGLKRWMDQ  457 (550)
Q Consensus       430 ~~a~~~L~~~~~~~~G------aN~R~L~~~i~~  457 (550)
                      ++++..|..+++...|      .|.|.+.++++.
T Consensus       317 ~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~  350 (604)
T 3k1j_A          317 KEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRA  350 (604)
T ss_dssp             HHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccccccCHHHHHHHHHH
Confidence            9999999986652223      256888888875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.61  E-value=3.9e-15  Score=153.99  Aligned_cols=190  Identities=15%  Similarity=0.184  Sum_probs=128.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCC-----------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDN-----------------  268 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-----------------  268 (550)
                      ..++||+++++.+..++...          .+..+++|+||+|+|||+++++++..+++....                 
T Consensus        14 ~~~vg~~~~~~~l~~~~~~~----------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~   83 (354)
T 1sxj_E           14 NALSHNEELTNFLKSLSDQP----------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL   83 (354)
T ss_dssp             GGCCSCHHHHHHHHTTTTCT----------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred             HHhcCCHHHHHHHHHHHhhC----------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccc
Confidence            45889999988776665211          133349999999999999999999976541100                 


Q ss_pred             ------CCceeEEecCCCCchh--hhhhHHhHHHHH--HH--------hCCCCeEEeccccccCHHHHHHHHHhhhhccc
Q 036633          269 ------DNHLIHFDMGNYTELE--SIKHFFDSLAAL--VK--------KRPYSVVLFDKIEKANSSILNLLLKILKTDFN  330 (550)
Q Consensus       269 ------~~~li~id~s~~~~~~--~~s~liG~lt~a--l~--------~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~  330 (550)
                            ..+++.++.+......  .+..++..+...  +.        ..++.|++|||++.+++..++.|++.+++.  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~--  161 (354)
T 1sxj_E           84 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY--  161 (354)
T ss_dssp             --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS--
T ss_pred             eeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh--
Confidence                  0123344433321111  111111111000  00        123469999999999999999999999876  


Q ss_pred             cccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHH
Q 036633          331 RKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWA  410 (550)
Q Consensus       331 ~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~  410 (550)
                      .           .++.||++||..                     ..+.|.+.+|| .++.|.   |++.+++..++...
T Consensus       162 ~-----------~~~~~Il~t~~~---------------------~~l~~~l~sR~-~~~~~~---~~~~~~~~~~l~~~  205 (354)
T 1sxj_E          162 S-----------KNIRLIMVCDSM---------------------SPIIAPIKSQC-LLIRCP---APSDSEISTILSDV  205 (354)
T ss_dssp             T-----------TTEEEEEEESCS---------------------CSSCHHHHTTS-EEEECC---CCCHHHHHHHHHHH
T ss_pred             c-----------CCCEEEEEeCCH---------------------HHHHHHHHhhc-eEEecC---CcCHHHHHHHHHHH
Confidence            4           456788888753                     35678899999 899999   99999999988887


Q ss_pred             HHHHHHHhccCCCccccCC-HHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          411 CEETKRRNNDSKAVIVCPS-TSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       411 l~~~~~~l~~~~~~~l~~~-~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +..       .|+   .++ +++++.|+..+-   | |.|.+.+.++.
T Consensus       206 ~~~-------~~~---~~~~~~~l~~i~~~~~---G-~~r~a~~~l~~  239 (354)
T 1sxj_E          206 VTN-------ERI---QLETKDILKRIAQASN---G-NLRVSLLMLES  239 (354)
T ss_dssp             HHH-------HTC---EECCSHHHHHHHHHHT---T-CHHHHHHHHTH
T ss_pred             HHH-------cCC---CCCcHHHHHHHHHHcC---C-CHHHHHHHHHH
Confidence            743       344   678 899999997542   6 77888888875

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.59  E-value=2e-14  Score=154.54  Aligned_cols=115  Identities=11%  Similarity=0.086  Sum_probs=81.5

Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhh
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSL  382 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~l  382 (550)
                      +|++|||++.++++.++.|++.+++.  .           .+ +||++||.+...+..   +.     .-.-...++|.+
T Consensus       297 ~VliIDEa~~l~~~a~~aLlk~lEe~--~-----------~~-~~il~tn~~~~~i~~---~~-----~~~~~~~l~~~i  354 (456)
T 2c9o_A          297 GVLFVDEVHMLDIECFTYLHRALESS--I-----------AP-IVIFASNRGNCVIRG---TE-----DITSPHGIPLDL  354 (456)
T ss_dssp             CEEEEESGGGCBHHHHHHHHHHTTST--T-----------CC-EEEEEECCSEEECBT---TS-----SCEEETTCCHHH
T ss_pred             eEEEEechhhcCHHHHHHHHHHhhcc--C-----------CC-EEEEecCCccccccc---cc-----cccccccCChhH
Confidence            59999999999999999999999988  5           34 466666654211100   00     000013568899


Q ss_pred             hhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcC-cccCCCcccHHHHHHcc
Q 036633          383 LKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNA-ARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       383 l~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~-~~~~GaN~R~L~~~i~~  457 (550)
                      ++|| .++.|.   |++.+++..++...+..       .++   .++++++.+|+..+ .   | +.|..-.+++.
T Consensus       355 ~sR~-~~~~~~---~~~~~e~~~iL~~~~~~-------~~~---~~~~~~~~~i~~~a~~---g-~~r~a~~ll~~  412 (456)
T 2c9o_A          355 LDRV-MIIRTM---LYTPQEMKQIIKIRAQT-------EGI---NISEEALNHLGEIGTK---T-TLRYSVQLLTP  412 (456)
T ss_dssp             HTTE-EEEECC---CCCHHHHHHHHHHHHHH-------HTC---CBCHHHHHHHHHHHHH---S-CHHHHHHTHHH
T ss_pred             Hhhc-ceeeCC---CCCHHHHHHHHHHHHHH-------hCC---CCCHHHHHHHHHHccC---C-CHHHHHHHHHH
Confidence            9999 678999   99999999999887742       233   68999999999865 3   4 44655555553

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.59  E-value=1.2e-14  Score=151.12  Aligned_cols=209  Identities=13%  Similarity=0.096  Sum_probs=143.7

Q ss_pred             hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC---CCCCceeEEecCCC
Q 036633          204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN---DNDNHLIHFDMGNY  280 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~---~~~~~li~id~s~~  280 (550)
                      ....++|++..+..+...+...   .    ....|.+++|+||||||||++|+.+++.+....   ....+++.+||...
T Consensus        17 ~p~~~~gr~~~~~~l~~~l~~~---~----~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   89 (387)
T 2v1u_A           17 VPDVLPHREAELRRLAEVLAPA---L----RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR   89 (387)
T ss_dssp             CCSCCTTCHHHHHHHHHTTGGG---T----SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHH---H----cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence            3478999999999998888654   1    122447999999999999999999999883200   01348899999876


Q ss_pred             Cchhhh-------------------hhHHhHHHHHHHhCC-CCeEEeccccccCHH--HHHHHHHhhhhccccccccCCe
Q 036633          281 TELESI-------------------KHFFDSLAALVKKRP-YSVVLFDKIEKANSS--ILNLLLKILKTDFNRKATRGIA  338 (550)
Q Consensus       281 ~~~~~~-------------------s~liG~lt~al~~~p-~~VlllDEIeka~~~--v~~~Ll~~ld~g~~~~l~d~g~  338 (550)
                      ......                   ..++..+...+.... ..||+|||++.+.+.  .++.|+.+++..  ....    
T Consensus        90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~--~~~~----  163 (387)
T 2v1u_A           90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRIN--QELG----  163 (387)
T ss_dssp             CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGG--GCC-----
T ss_pred             CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhch--hhcC----
Confidence            543321                   111223333333322 359999999999876  778888777643  2010    


Q ss_pred             EeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc-eeEecCCCCCCHHHHHHHHHHHHHHHHHH
Q 036633          339 AFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK-LVVIDLAVPLLDTTRLLLREWACEETKRR  417 (550)
Q Consensus       339 ~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~-ii~f~~~~pL~~e~i~~I~~~~l~~~~~~  417 (550)
                       . -.++++|+|||...                  +...+.+.+.+|+.. .+.|.   |++.+++..++...+..   .
T Consensus       164 -~-~~~~~~I~~t~~~~------------------~~~~l~~~l~~r~~~~~i~l~---~l~~~~~~~il~~~~~~---~  217 (387)
T 2v1u_A          164 -D-RVWVSLVGITNSLG------------------FVENLEPRVKSSLGEVELVFP---PYTAPQLRDILETRAEE---A  217 (387)
T ss_dssp             ------CEEEEECSCST------------------TSSSSCHHHHTTTTSEECCBC---CCCHHHHHHHHHHHHHH---H
T ss_pred             -C-CceEEEEEEECCCc------------------hHhhhCHHHHhcCCCeEEeeC---CCCHHHHHHHHHHHHHh---h
Confidence             0 13456888888641                  124678899999975 88999   99999999999988743   1


Q ss_pred             hccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          418 NNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       418 l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +  .   ...+++++++.++..++...| |.|.+.++++.
T Consensus       218 ~--~---~~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~  251 (387)
T 2v1u_A          218 F--N---PGVLDPDVVPLCAALAAREHG-DARRALDLLRV  251 (387)
T ss_dssp             B--C---TTTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHH
T ss_pred             c--c---CCCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHH
Confidence            1  2   236788999999986653347 88988888876

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.58  E-value=1.4e-14  Score=140.44  Aligned_cols=180  Identities=10%  Similarity=0.190  Sum_probs=128.0

Q ss_pred             cHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHH
Q 036633          211 QNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFF  290 (550)
Q Consensus       211 Q~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~li  290 (550)
                      +..++..+...+...           .+.+++|+||||||||++|+++++.+..   ...+++.++++++.....  ..+
T Consensus        36 ~~~~~~~l~~~~~~~-----------~~~~~ll~G~~G~GKT~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~--~~~   99 (242)
T 3bos_A           36 NDELIGALKSAASGD-----------GVQAIYLWGPVKSGRTHLIHAACARANE---LERRSFYIPLGIHASIST--ALL   99 (242)
T ss_dssp             CHHHHHHHHHHHHTC-----------SCSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEGGGGGGSCG--GGG
T ss_pred             CHHHHHHHHHHHhCC-----------CCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHHHH--HHH
Confidence            356666665555432           3368999999999999999999999876   556888999887653211  111


Q ss_pred             hHHHHHHHhCCCCeEEeccccccCHHH--HHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHh
Q 036633          291 DSLAALVKKRPYSVVLFDKIEKANSSI--LNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYG  368 (550)
Q Consensus       291 G~lt~al~~~p~~VlllDEIeka~~~v--~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~  368 (550)
                      ..    +  ....||+|||++.++...  ++.|+.+++.-  .  ..       ....+|+|||......          
T Consensus       100 ~~----~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~--~--~~-------~~~~ii~~~~~~~~~~----------  152 (242)
T 3bos_A          100 EG----L--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRV--A--EQ-------KRGSLIVSASASPMEA----------  152 (242)
T ss_dssp             TT----G--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHH--H--HH-------CSCEEEEEESSCTTTT----------
T ss_pred             Hh----c--cCCCEEEEeccccccCCHHHHHHHHHHHHHH--H--Hc-------CCCeEEEEcCCCHHHH----------
Confidence            11    1  224799999999997755  88888887654  2  00       1123666666543111          


Q ss_pred             hHHHHhccCCChhhhhhcc--ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCC
Q 036633          369 RVNEVTGSLFKPSLLKLLD--KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQ  446 (550)
Q Consensus       369 ~~~~~l~~~f~p~ll~Rid--~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~Ga  446 (550)
                             ..+.+.+.+|+.  .++.|.   |++.+++..++...+..       .++   .++++++++|+..+ +  | 
T Consensus       153 -------~~~~~~l~~r~~~~~~i~l~---~~~~~~~~~~l~~~~~~-------~~~---~~~~~~~~~l~~~~-~--g-  208 (242)
T 3bos_A          153 -------GFVLPDLVSRMHWGLTYQLQ---PMMDDEKLAALQRRAAM-------RGL---QLPEDVGRFLLNRM-A--R-  208 (242)
T ss_dssp             -------TCCCHHHHHHHHHSEEEECC---CCCGGGHHHHHHHHHHH-------TTC---CCCHHHHHHHHHHT-T--T-
T ss_pred             -------HHhhhhhhhHhhcCceEEeC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHc-c--C-
Confidence                   234588999996  789999   99999999999887743       444   78999999999854 2  6 


Q ss_pred             cccHHHHHHcc
Q 036633          447 NGEGLKRWMDQ  457 (550)
Q Consensus       447 N~R~L~~~i~~  457 (550)
                      |+|.+.+.++.
T Consensus       209 ~~r~l~~~l~~  219 (242)
T 3bos_A          209 DLRTLFDVLDR  219 (242)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            88999999996

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.58  E-value=4.9e-14  Score=146.99  Aligned_cols=204  Identities=13%  Similarity=0.120  Sum_probs=145.8

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCe--eEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecCCCC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLG--LFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMGNYT  281 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~--~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s~~~  281 (550)
                      ...++|++..++.+...+...   ..|    ..|.  +++|+||||||||++++.+++.+..   . ..+++.+||+...
T Consensus        16 p~~l~gr~~~~~~l~~~l~~~---~~~----~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~i~~~~~~   85 (389)
T 1fnn_A           16 PKRLPHREQQLQQLDILLGNW---LRN----PGHHYPRATLLGRPGTGKTVTLRKLWELYKD---KTTARFVYINGFIYR   85 (389)
T ss_dssp             CSCCTTCHHHHHHHHHHHHHH---HHS----TTSSCCEEEEECCTTSSHHHHHHHHHHHHTT---SCCCEEEEEETTTCC
T ss_pred             CCCCCChHHHHHHHHHHHHHH---HcC----CCCCCCeEEEECCCCCCHHHHHHHHHHHHhh---hcCeeEEEEeCccCC
Confidence            367999999999999998875   322    1233  8999999999999999999999865   4 3578999988765


Q ss_pred             chhhh-h------------------hHHhHHHHHHHhC-CCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee
Q 036633          282 ELESI-K------------------HFFDSLAALVKKR-PYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD  341 (550)
Q Consensus       282 ~~~~~-s------------------~liG~lt~al~~~-p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd  341 (550)
                      ..... .                  .++..+...+... ...||+|||++.++++.+..|+++++..  . - .     .
T Consensus        86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~--~-~-~-----~  156 (389)
T 1fnn_A           86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEA--D-K-L-----G  156 (389)
T ss_dssp             SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCH--H-H-H-----S
T ss_pred             CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhC--C-C-C-----C
Confidence            43211 1                  1111333334332 2469999999999999999999999754  2 0 0     0


Q ss_pred             cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc-eeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK-LVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~-ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                      -.++.||++||...  .                ...+.+.+.+|+.. .+.|.   ||+.+++..++...+...      
T Consensus       157 ~~~~~iI~~~~~~~--~----------------~~~l~~~~~~r~~~~~i~~~---pl~~~~~~~~l~~~~~~~------  209 (389)
T 1fnn_A          157 AFRIALVIVGHNDA--V----------------LNNLDPSTRGIMGKYVIRFS---PYTKDQIFDILLDRAKAG------  209 (389)
T ss_dssp             SCCEEEEEEESSTH--H----------------HHTSCHHHHHHHTTCEEECC---CCBHHHHHHHHHHHHHHH------
T ss_pred             cCCEEEEEEECCch--H----------------HHHhCHHhhhcCCCceEEeC---CCCHHHHHHHHHHHHHhh------
Confidence            02456788877532  1                13578889999965 79999   999999999988877431      


Q ss_pred             CCCccccCCHHHHHHHHhcCccc------CCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSALVHIASNAARK------YGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~~~~~~------~GaN~R~L~~~i~~  457 (550)
                       +. ...+++++++.++..++..      .| |.|.+.++++.
T Consensus       210 -~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~  249 (389)
T 1fnn_A          210 -LA-EGSYSEDILQMIADITGAQTPLDTNRG-DARLAIDILYR  249 (389)
T ss_dssp             -BC-TTSSCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHH
T ss_pred             -cC-CCCCCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHH
Confidence             11 2268999999999876522      36 77888888875

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.58  E-value=2.3e-14  Score=147.85  Aligned_cols=181  Identities=12%  Similarity=0.076  Sum_probs=127.3

Q ss_pred             cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC------------------CCC
Q 036633          209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND------------------NDN  270 (550)
Q Consensus       209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~------------------~~~  270 (550)
                      -.|+++++.+..++...   +       -|..+||+||+|+|||++|+.+|+.+.....                  ...
T Consensus         5 pw~~~~~~~l~~~i~~~---~-------~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~   74 (334)
T 1a5t_A            5 PWLRPDFEKLVASYQAG---R-------GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP   74 (334)
T ss_dssp             GGGHHHHHHHHHHHHTT---C-------CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred             CchHHHHHHHHHHHHcC---C-------cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence            45788888888888765   1       2368999999999999999999999976210                  012


Q ss_pred             ceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          271 HLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       271 ~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                      .+..++..+-.....+.. +..+.+.+...|    +.|++|||+|+++++.++.|++.+++.  .           .+++
T Consensus        75 d~~~~~~~~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep--~-----------~~~~  140 (334)
T 1a5t_A           75 DYYTLAPEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP--P-----------AETW  140 (334)
T ss_dssp             TEEEECCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC--C-----------TTEE
T ss_pred             CEEEEeccccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC--C-----------CCeE
Confidence            344554421000011111 113344444333    579999999999999999999999987  5           6788


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV  426 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l  426 (550)
                      +|++||..                     ..+.|.+.+|| .++.|.   |++.+++..++...+               
T Consensus       141 ~Il~t~~~---------------------~~l~~ti~SRc-~~~~~~---~~~~~~~~~~L~~~~---------------  180 (334)
T 1a5t_A          141 FFLATREP---------------------ERLLATLRSRC-RLHYLA---PPPEQYAVTWLSREV---------------  180 (334)
T ss_dssp             EEEEESCG---------------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHC---------------
T ss_pred             EEEEeCCh---------------------HhCcHHHhhcc-eeeeCC---CCCHHHHHHHHHHhc---------------
Confidence            88888752                     35778999999 799999   999999887766432               


Q ss_pred             cCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          427 CPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       427 ~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .+++++++.++..+.   | +.|...+.++.
T Consensus       181 ~~~~~~~~~l~~~s~---G-~~r~a~~~l~~  207 (334)
T 1a5t_A          181 TMSQDALLAALRLSA---G-SPGAALALFQG  207 (334)
T ss_dssp             CCCHHHHHHHHHHTT---T-CHHHHHHTTSS
T ss_pred             CCCHHHHHHHHHHcC---C-CHHHHHHHhcc
Confidence            458888888887543   4 55666666654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.58  E-value=4.8e-16  Score=154.69  Aligned_cols=194  Identities=22%  Similarity=0.288  Sum_probs=124.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      ..++|++.+++.+...+.....    ...|.   ..|..++|+||||||||++|+++|+.+..      +++.++++.+.
T Consensus        11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~vll~G~~GtGKT~la~~la~~~~~------~~~~v~~~~~~   81 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGA---KIPKGVLLVGPPGTGKTLLAKAVAGEAHV------PFFSMGGSSFI   81 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSC---CCCSCCCCBCSSCSSHHHHHHHHHHHHTC------CCCCCCSCTTT
T ss_pred             HHhCCcHHHHHHHHHHHHHHHChHHHHHCCC---CCCceEEEECCCCCcHHHHHHHHHHHhCC------CEEEechHHHH
Confidence            4689999999888877653200    00122   12356899999999999999999999876      89999998775


Q ss_pred             chhh---hhhHHhHHHHHHHhCCCCeEEeccccccCHH---------------HHHHHHHhhhhccccccccCCeEeecC
Q 036633          282 ELES---IKHFFDSLAALVKKRPYSVVLFDKIEKANSS---------------ILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       282 ~~~~---~s~liG~lt~al~~~p~~VlllDEIeka~~~---------------v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      ....   ...+-+.+..+.. ...+||||||++.+.+.               +++.|+..++.-  .        ....
T Consensus        82 ~~~~~~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~--------~~~~  150 (268)
T 2r62_A           82 EMFVGLGASRVRDLFETAKK-QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF--G--------SENA  150 (268)
T ss_dssp             TSCSSSCSSSSSTTHHHHHH-SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS--S--------CSCS
T ss_pred             HhhcchHHHHHHHHHHHHHh-cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc--c--------cCCC
Confidence            4211   0111113333333 34489999999998754               344455555422  1        0124


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                      +++||+|||..                     ..++|+++.  |++..+.|.   +++.++...++...+..       .
T Consensus       151 ~v~vi~ttn~~---------------------~~ld~~l~r~~Rf~~~i~i~---~p~~~~r~~il~~~~~~-------~  199 (268)
T 2r62_A          151 PVIVLAATNRP---------------------EILDPALMRPGRFDRQVLVD---KPDFNGRVEILKVHIKG-------V  199 (268)
T ss_dssp             CCEEEECBSCC---------------------TTSCGGGGSSSSSCCCCBCC---CCCTTTHHHHHHHHTSS-------S
T ss_pred             CEEEEEecCCc---------------------hhcCHhHcCCCCCCeEEEec---CcCHHHHHHHHHHHHhc-------C
Confidence            47899999974                     356778887  998899999   88888888888766531       2


Q ss_pred             CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .+   . ++..++.|+....   |.++|.|+++++.
T Consensus       200 ~~---~-~~~~~~~la~~~~---g~~g~dl~~l~~~  228 (268)
T 2r62_A          200 KL---A-NDVNLQEVAKLTA---GLAGADLANIINE  228 (268)
T ss_dssp             CC---C-SSCCTTTTTSSSC---SSCHHHHHHHHHH
T ss_pred             CC---C-CccCHHHHHHHcC---CCCHHHHHHHHHH
Confidence            11   1 1111334554322   4355889988886

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.57  E-value=1.3e-14  Score=151.37  Aligned_cols=201  Identities=17%  Similarity=0.154  Sum_probs=138.5

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CC-CCceeEEecCC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DN-DNHLIHFDMGN  279 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~-~~~li~id~s~  279 (550)
                      ...++|++..++.+...+...   ..+    ..|.+++|+||||||||++|+.+++.+....    .. ..+++.+||+.
T Consensus        19 p~~l~gr~~~~~~l~~~l~~~---~~~----~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~   91 (384)
T 2qby_B           19 FKEIPFREDILRDAAIAIRYF---VKN----EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE   91 (384)
T ss_dssp             CSSCTTCHHHHHHHHHHHHHH---HTT----CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHH---HcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence            478999999999999988765   222    2347999999999999999999999883300    01 44889999887


Q ss_pred             CC-chhh-----hhh---------------HHhHHHHHHHhCCCCeEEeccccccCHHH-HHH-HHHhhhhccccccccC
Q 036633          280 YT-ELES-----IKH---------------FFDSLAALVKKRPYSVVLFDKIEKANSSI-LNL-LLKILKTDFNRKATRG  336 (550)
Q Consensus       280 ~~-~~~~-----~s~---------------liG~lt~al~~~p~~VlllDEIeka~~~v-~~~-Ll~~ld~g~~~~l~d~  336 (550)
                      .. ....     ...               ++..+.+.+...+. ||+|||++.+.+.. ++. +..+++..        
T Consensus        92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~--------  162 (384)
T 2qby_B           92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSD--------  162 (384)
T ss_dssp             HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSS--------
T ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeHHHHhcCC--------
Confidence            54 2221     111               12233333434443 99999999986542 444 44444311        


Q ss_pred             CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHH
Q 036633          337 IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKR  416 (550)
Q Consensus       337 g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~  416 (550)
                            .++.||+|||...                  +...+.+.+.+|+...+.|.   ||+.+++..++...+..   
T Consensus       163 ------~~~~iI~~t~~~~------------------~~~~l~~~l~sr~~~~i~l~---~l~~~~~~~il~~~~~~---  212 (384)
T 2qby_B          163 ------ANISVIMISNDIN------------------VRDYMEPRVLSSLGPSVIFK---PYDAEQLKFILSKYAEY---  212 (384)
T ss_dssp             ------SCEEEEEECSSTT------------------TTTTSCHHHHHTCCCEEEEC---CCCHHHHHHHHHHHHHH---
T ss_pred             ------cceEEEEEECCCc------------------hHhhhCHHHHhcCCCeEEEC---CCCHHHHHHHHHHHHHh---
Confidence                  3566888888531                  12456888999987799999   99999999999987742   


Q ss_pred             HhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          417 RNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       417 ~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .+  .   ...+++++++.++..+....| |.|.+.++++.
T Consensus       213 ~~--~---~~~~~~~~~~~i~~~~~~~~G-~~r~a~~~l~~  247 (384)
T 2qby_B          213 GL--I---KGTYDDEILSYIAAISAKEHG-DARKAVNLLFR  247 (384)
T ss_dssp             TS--C---TTSCCSHHHHHHHHHHHTTCC-CHHHHHHHHHH
T ss_pred             hc--c---cCCcCHHHHHHHHHHHHhccC-CHHHHHHHHHH
Confidence            11  1   236889999999986553347 88877777775

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.56  E-value=8.9e-15  Score=149.30  Aligned_cols=236  Identities=14%  Similarity=0.058  Sum_probs=145.5

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCC-C---CCceeEEecCCCCc
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND-N---DNHLIHFDMGNYTE  282 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~-~---~~~li~id~s~~~~  282 (550)
                      .+.|.+.-+..+...+...   -.    ..+|.+++|+||||||||.+++.+++.+..... .   .-.++.+||..+..
T Consensus        21 ~L~~Re~E~~~i~~~L~~~---i~----~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t   93 (318)
T 3te6_A           21 LLKSQVEDFTRIFLPIYDS---LM----SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG   93 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---HH----TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred             ccCCHHHHHHHHHHHHHHH---hc----CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence            3788889999998888876   21    235689999999999999999999999964100 0   12578899988765


Q ss_pred             hhhhh-----hHHh----------HHHHHHH-----hCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeec
Q 036633          283 LESIK-----HFFD----------SLAALVK-----KRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       283 ~~~~s-----~liG----------~lt~al~-----~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      ...+-     .+.|          .|...+.     .....||+|||+|.+.  -|+.|+.+++-.  . .       +-
T Consensus        94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~--~-~-------~~  161 (318)
T 3te6_A           94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWI--S-S-------KN  161 (318)
T ss_dssp             -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHH--H-C-------SS
T ss_pred             HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcc--c-c-------cC
Confidence            43321     1211          2222222     2334699999999998  678888887633  2 1       11


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc-ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhc--
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD-KLVVIDLAVPLLDTTRLLLREWACEETKRRNN--  419 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid-~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~--  419 (550)
                      ++.+||+++|.-.-.                 ...+++.+.+|+. .+|.|.   ||+.+++..|+...+..+...+-  
T Consensus       162 s~~~vI~i~n~~d~~-----------------~~~L~~~v~SR~~~~~i~F~---pYt~~el~~Il~~Rl~~~~~~~f~~  221 (318)
T 3te6_A          162 SKLSIICVGGHNVTI-----------------REQINIMPSLKAHFTEIKLN---KVDKNELQQMIITRLKSLLKPFHVK  221 (318)
T ss_dssp             CCEEEEEECCSSCCC-----------------HHHHHTCHHHHTTEEEEECC---CCCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             CcEEEEEEecCcccc-----------------hhhcchhhhccCCceEEEeC---CCCHHHHHHHHHHHHHhhhcccccc
Confidence            456788888852100                 0122455778986 589999   99999999999999976432100  


Q ss_pred             ---c------------------CCC--ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc-hhhHHH--HHhhhhcCCC
Q 036633          420 ---D------------------SKA--VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ-RPSADH--VIDKFLRDAG  473 (550)
Q Consensus       420 ---~------------------~~~--~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~-~~la~~--~l~~~~~~~~  473 (550)
                         +                  .|+  ..+.++++++++++.......| ..|-.-.++++ .-+++.  +-.... .++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~-~~~  299 (318)
T 3te6_A          222 VNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGL-QKG  299 (318)
T ss_dssp             ECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTE-ETT
T ss_pred             ccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCC-CCC
Confidence               0                  010  0346899999999985432224 33644444444 222221  111122 345


Q ss_pred             ccccccchhh
Q 036633          474 YNHQSKEETE  483 (550)
Q Consensus       474 ~~~i~~~~~~  483 (550)
                      ..+|+.+..+
T Consensus       300 ~~~i~~~~~~  309 (318)
T 3te6_A          300 KLVVSQEMVP  309 (318)
T ss_dssp             EECCSEECCT
T ss_pred             cEEeeHHHHH
Confidence            5666665443

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.55  E-value=2e-14  Score=146.40  Aligned_cols=147  Identities=12%  Similarity=0.164  Sum_probs=110.8

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC-CCchhhhhh
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN-YTELESIKH  288 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~-~~~~~~~s~  288 (550)
                      ||+++++.+.+.+...           ++.++||+||||+|||++|+++|+.+..+......++.++.+. ......   
T Consensus         1 g~~~~~~~L~~~i~~~-----------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~---   66 (305)
T 2gno_A            1 GAKDQLETLKRIIEKS-----------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD---   66 (305)
T ss_dssp             ---CHHHHHHHHHHTC-----------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH---
T ss_pred             ChHHHHHHHHHHHHCC-----------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH---
Confidence            8999999999998865           2469999999999999999999987432111244788888653 111111   


Q ss_pred             HHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhh
Q 036633          289 FFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLT  364 (550)
Q Consensus       289 liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~  364 (550)
                       +..+.+.+...|    +.|++|||+|.++.+.++.||+.+|+.  .           .+++||++||..          
T Consensus        67 -ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep--~-----------~~t~fIl~t~~~----------  122 (305)
T 2gno_A           67 -IRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEP--P-----------EYAVIVLNTRRW----------  122 (305)
T ss_dssp             -HHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSC--C-----------TTEEEEEEESCG----------
T ss_pred             -HHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCC--C-----------CCeEEEEEECCh----------
Confidence             223445555555    469999999999999999999999988  5           678888888742          


Q ss_pred             hhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHH
Q 036633          365 ATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWAC  411 (550)
Q Consensus       365 ~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l  411 (550)
                                 ..+.|.+.+|   ++.|.   |++.+++..++...+
T Consensus       123 -----------~kl~~tI~SR---~~~f~---~l~~~~i~~~L~~~~  152 (305)
T 2gno_A          123 -----------HYLLPTIKSR---VFRVV---VNVPKEFRDLVKEKI  152 (305)
T ss_dssp             -----------GGSCHHHHTT---SEEEE---CCCCHHHHHHHHHHH
T ss_pred             -----------HhChHHHHce---eEeCC---CCCHHHHHHHHHHHh
Confidence                       3677899999   89999   999999999888765

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.54  E-value=1.7e-14  Score=154.29  Aligned_cols=167  Identities=16%  Similarity=0.228  Sum_probs=120.3

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh--------HHHHHHHhCCCCeEEecc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD--------SLAALVKKRPYSVVLFDK  309 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG--------~lt~al~~~p~~VlllDE  309 (550)
                      +.+++|+||||||||++|++++..+.... ...+++.++++.+..     .+++        .+....+ ....||||||
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~vL~IDE  202 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKFLN-----DLVDSMKEGKLNEFREKYR-KKVDILLIDD  202 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHHHHHH-----HHHHHHHTTCHHHHHHHHT-TTCSEEEEEC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHH-----HHHHHHHcccHHHHHHHhc-CCCCEEEEeC
Confidence            56899999999999999999999884400 144788899877532     2222        2222222 1457999999


Q ss_pred             ccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc
Q 036633          310 IEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD  387 (550)
Q Consensus       310 Ieka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid  387 (550)
                      ++.+..  ..++.|+.+++.-  .   .       .+..||+||+.....+                 ..+.+.+++|+.
T Consensus       203 i~~l~~~~~~q~~l~~~l~~l--~---~-------~~~~iIitt~~~~~~l-----------------~~l~~~L~sR~~  253 (440)
T 2z4s_A          203 VQFLIGKTGVQTELFHTFNEL--H---D-------SGKQIVICSDREPQKL-----------------SEFQDRLVSRFQ  253 (440)
T ss_dssp             GGGGSSCHHHHHHHHHHHHHH--H---T-------TTCEEEEEESSCGGGC-----------------SSCCHHHHHHHH
T ss_pred             cccccCChHHHHHHHHHHHHH--H---H-------CCCeEEEEECCCHHHH-----------------HHHHHHHHhhcc
Confidence            999886  7888888888653  1   1       1234566666543221                 347899999996


Q ss_pred             --ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          388 --KLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       388 --~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        .++.|.   |++.+++..|+...+..       .++   .++++++++|+..+-   | |+|.+.+++++
T Consensus       254 ~g~~i~l~---~p~~e~r~~iL~~~~~~-------~~~---~i~~e~l~~la~~~~---g-n~R~l~~~L~~  308 (440)
T 2z4s_A          254 MGLVAKLE---PPDEETRKSIARKMLEI-------EHG---ELPEEVLNFVAENVD---D-NLRRLRGAIIK  308 (440)
T ss_dssp             SSBCCBCC---CCCHHHHHHHHHHHHHH-------HTC---CCCTTHHHHHHHHCC---S-CHHHHHHHHHH
T ss_pred             CCeEEEeC---CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHhcC---C-CHHHHHHHHHH
Confidence              688899   99999999998887743       344   679999999997542   6 99999999997

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.54  E-value=9.3e-15  Score=157.59  Aligned_cols=138  Identities=20%  Similarity=0.213  Sum_probs=113.1

Q ss_pred             hhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHHH
Q 036633            5 KFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKYF   81 (550)
Q Consensus         5 ~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~~   81 (550)
                      ..+..||+++.++|+.||+|.|+|+|+.+++.+|+|  |+++|++||||||+||+   ++++...+.|   ..+..+++.
T Consensus       328 e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~--~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p---~~i~~l~~~  402 (468)
T 3pxg_A          328 DESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDR--YISDRFLPDKAIDLIDEAGSKVRLRSFTTP---PNLKELEQK  402 (468)
T ss_dssp             HHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHH--SSCCSCTTHHHHHHHHHHHHHHHHHTTSCC---SSTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--HhccCcCCcHHHHHHHHHHHHHHhccCCCc---hHHHHHHHH
Confidence            367899999999999999999999999999999999  99999999999999999   6788888999   999999999


Q ss_pred             HHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccHHHHHHHHHHHHhh
Q 036633           82 LRRAVVEYEQLVKEDTDHSSRSFWLRQIDNELKDAFFELVSFVKLRMQVEYDDFVSCVHDAKRVKDYSKILDQIDARVHG  161 (550)
Q Consensus        82 ~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (550)
                      +.+++.+....... .|...... +.+-..+++.++++++.+|...-                                 
T Consensus       403 i~~l~~~~~~~~~~-~d~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~---------------------------------  447 (468)
T 3pxg_A          403 LDEVRKEKDAAVQS-QEFEKAAS-LRDTEQRLREQVEDTKKSWKEKQ---------------------------------  447 (468)
T ss_dssp             HHHHHHHHHHHHHH-CCSHHHHH-HHHHHHHHHHHHHHHHSGGGHHH---------------------------------
T ss_pred             HHHHHHHHHHHHhC-cCHHHHHH-HHHHHHHHHHHHHHHHHHHHhhc---------------------------------
Confidence            99999998877665 55544333 44444555777777777776200                                 


Q ss_pred             hhcCCCccCHHHHHHHHHHHhC
Q 036633          162 KFKEKLAVDVEEIAEVASKLTG  183 (550)
Q Consensus       162 ~~~~~~~v~~~~i~~v~~~~~g  183 (550)
                       ......|+.+||++||++|||
T Consensus       448 -~~~~~~~~~~~~~~~~~~~~~  468 (468)
T 3pxg_A          448 -GQENSEVTVDDIAMVVSSWTG  468 (468)
T ss_dssp             -HHHTTCCCTHHHHHHHHTTC-
T ss_pred             -cCCCCccCHHHHHHHHHHHhC
Confidence             012567999999999999998

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.53  E-value=4.2e-14  Score=154.35  Aligned_cols=193  Identities=10%  Similarity=0.078  Sum_probs=132.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchhh-hcCCCCcC----CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAA-KKGLSSRR----QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~-~~gl~~~~----~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      ..++|++.+++.+..++...... ..|+..+.    .+ .++||+||||||||++|+++|+.+..      +++.+|++.
T Consensus        39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~------~~i~in~s~  112 (516)
T 1sxj_A           39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY------DILEQNASD  112 (516)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC------EEEEECTTS
T ss_pred             HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC------CEEEEeCCC
Confidence            56999999999999999864110 12222221    13 79999999999999999999999866      899999998


Q ss_pred             CCchhhhhhHHh----------HHHHH----HHhCCCCeEEeccccccCHHH---HHHHHHhhhhccccccccCCeEeec
Q 036633          280 YTELESIKHFFD----------SLAAL----VKKRPYSVVLFDKIEKANSSI---LNLLLKILKTDFNRKATRGIAAFDL  342 (550)
Q Consensus       280 ~~~~~~~s~liG----------~lt~a----l~~~p~~VlllDEIeka~~~v---~~~Ll~~ld~g~~~~l~d~g~~vd~  342 (550)
                      ..........++          .+..+    .......||||||++.++...   ++.|+++++.+  .           
T Consensus       113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~-----------  179 (516)
T 1sxj_A          113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--S-----------  179 (516)
T ss_dssp             CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--S-----------
T ss_pred             cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--C-----------
Confidence            876543222221          11111    012345799999999997643   48888888876  3           


Q ss_pred             CCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCC
Q 036633          343 TNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSK  422 (550)
Q Consensus       343 ~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~  422 (550)
                        ..||+++|...                   ...+ +.|.+|+ ..|.|.   +++.+++..++...+..       .+
T Consensus       180 --~~iIli~~~~~-------------------~~~l-~~l~~r~-~~i~f~---~~~~~~~~~~L~~i~~~-------~~  226 (516)
T 1sxj_A          180 --TPLILICNERN-------------------LPKM-RPFDRVC-LDIQFR---RPDANSIKSRLMTIAIR-------EK  226 (516)
T ss_dssp             --SCEEEEESCTT-------------------SSTT-GGGTTTS-EEEECC---CCCHHHHHHHHHHHHHH-------HT
T ss_pred             --CCEEEEEcCCC-------------------Cccc-hhhHhce-EEEEeC---CCCHHHHHHHHHHHHHH-------cC
Confidence              11445444311                   0223 3477777 689999   99999999888766643       34


Q ss_pred             CccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          423 AVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       423 ~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      +   .+++++++.|+..+-   | |.|.+.+.++.
T Consensus       227 ~---~i~~~~l~~la~~s~---G-diR~~i~~L~~  254 (516)
T 1sxj_A          227 F---KLDPNVIDRLIQTTR---G-DIRQVINLLST  254 (516)
T ss_dssp             C---CCCTTHHHHHHHHTT---T-CHHHHHHHHTH
T ss_pred             C---CCCHHHHHHHHHHcC---C-cHHHHHHHHHH
Confidence            4   678999999998642   6 77888888764

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.52  E-value=2.9e-14  Score=153.71  Aligned_cols=178  Identities=15%  Similarity=0.191  Sum_probs=115.9

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      ..|+|++..+..+...+.+.           .+.++||+||||||||++|++||..+...+    ....+++.+||+...
T Consensus       180 d~iiGr~~~i~~l~~~l~r~-----------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~  248 (468)
T 3pxg_A          180 DPVIGRSKEIQRVIEVLSRR-----------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY  248 (468)
T ss_dssp             CCCCCCHHHHHHHHHHHHCS-----------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------
T ss_pred             CCccCcHHHHHHHHHHHhcc-----------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccc
Confidence            46999999999999888765           346889999999999999999999985411    124478899987111


Q ss_pred             chhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633          282 ELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV  361 (550)
Q Consensus       282 ~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~  361 (550)
                      . .....-+..+.+.+...+.+|||+|    ...+.++.|+++++.|  .             .++|++||...-.-   
T Consensus       249 ~-g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g--~-------------v~vI~at~~~e~~~---  305 (468)
T 3pxg_A          249 R-GEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG--E-------------LQCIGATTLDEYRK---  305 (468)
T ss_dssp             -----CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS--S-------------CEEEEECCTTTTHH---
T ss_pred             c-chHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC--C-------------EEEEecCCHHHHHH---
Confidence            0 0110112234444555566899999    6778999999999888  4             33788888652100   


Q ss_pred             hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcC
Q 036633          362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNA  440 (550)
Q Consensus       362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~  440 (550)
                                   .-..+|+|.+|| .+|.|.   +++.++...|+...+..+..   .+   .+.++++++.+++..+
T Consensus       306 -------------~~~~~~al~~Rf-~~i~v~---~p~~e~~~~iL~~~~~~~~~---~~---~~~i~~~al~~l~~~s  361 (468)
T 3pxg_A          306 -------------YIEKDAALERRF-QPIQVD---QPSVDESIQILQGLRDRYEA---HH---RVSITDDAIEAAVKLS  361 (468)
T ss_dssp             -------------HHTTCSHHHHSE-EEEECC---CCCHHHHHHHHHHTTTTSGG---GS---SCSCCHHHHHHHHHHH
T ss_pred             -------------HhhcCHHHHHhC-ccceeC---CCCHHHHHHHHHHHHHHHHH---hc---CCCCCHHHHHHHHHHH
Confidence                         013578999999 579999   88999999999876543221   23   3478999999998743

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.50  E-value=5.5e-13  Score=137.41  Aligned_cols=191  Identities=19%  Similarity=0.217  Sum_probs=131.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ..++||+.+++.+...+...   +.    ++.+ .+++|+||||+|||++|++||..+..      ++...+.+.+....
T Consensus        25 ~~~~g~~~~~~~l~~~i~~~---~~----~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~------~~~~~sg~~~~~~~   91 (334)
T 1in4_A           25 DEFIGQENVKKKLSLALEAA---KM----RGEVLDHVLLAGPPGLGKTTLAHIIASELQT------NIHVTSGPVLVKQG   91 (334)
T ss_dssp             GGCCSCHHHHHHHHHHHHHH---HH----HTCCCCCEEEESSTTSSHHHHHHHHHHHHTC------CEEEEETTTCCSHH
T ss_pred             HHccCcHHHHHHHHHHHHHH---Hh----cCCCCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEechHhcCHH
Confidence            35789999999988887643   11    1233 78999999999999999999999865      55544444332221


Q ss_pred             hhhhHHhHHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhhccccccc----cC--CeE--eecCCeEEEEeCCCCh
Q 036633          285 SIKHFFDSLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKAT----RG--IAA--FDLTNTLIIMTSDLKD  355 (550)
Q Consensus       285 ~~s~liG~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~----d~--g~~--vd~~~~iiI~TsN~g~  355 (550)
                      .       +...... ....|+|+||++.+++.+++.|+..++.+  . +.    .+  .+.  .......++.++|.. 
T Consensus        92 ~-------l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~--~-~~i~~~~~~~~~~i~~~l~~~~li~at~~~-  160 (334)
T 1in4_A           92 D-------MAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDF--Q-IDIMIGKGPSAKSIRIDIQPFTLVGATTRS-  160 (334)
T ss_dssp             H-------HHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTS--C-CCC---------------CCCEEEEEESCG-
T ss_pred             H-------HHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhc--c-cceeeccCcccccccccCCCeEEEEecCCc-
Confidence            2       2222222 35579999999999999999999888765  3 21    01  111  122334455555532 


Q ss_pred             HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHH
Q 036633          356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVH  435 (550)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~  435 (550)
                                          ..+++.+.+|+...+.|+   |++.+++..++......       .++   .++++++.+
T Consensus       161 --------------------~~Ls~~l~sR~~l~~~Ld---~~~~~~l~~iL~~~~~~-------~~~---~~~~~~~~~  207 (334)
T 1in4_A          161 --------------------GLLSSPLRSRFGIILELD---FYTVKELKEIIKRAASL-------MDV---EIEDAAAEM  207 (334)
T ss_dssp             --------------------GGSCHHHHTTCSEEEECC---CCCHHHHHHHHHHHHHH-------TTC---CBCHHHHHH
T ss_pred             --------------------ccCCHHHHHhcCceeeCC---CCCHHHHHHHHHHHHHH-------cCC---CcCHHHHHH
Confidence                                357888999997678899   99999999999876542       344   789999999


Q ss_pred             HHhcCcccCCCcccHHHHHHcc
Q 036633          436 IASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       436 L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      |+..+-   | +.|.+.+++++
T Consensus       208 ia~~~~---G-~~R~a~~ll~~  225 (334)
T 1in4_A          208 IAKRSR---G-TPRIAIRLTKR  225 (334)
T ss_dssp             HHHTST---T-CHHHHHHHHHH
T ss_pred             HHHhcC---C-ChHHHHHHHHH
Confidence            998653   5 66888777775

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.50  E-value=2.2e-14  Score=162.26  Aligned_cols=193  Identities=21%  Similarity=0.284  Sum_probs=119.5

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCC-CcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLS-SRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE  282 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~-~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~  282 (550)
                      ...+.|.+++++.+.+.+...+.....+. ...+| ..+||+||||||||.+|+++|..+..      +|+.++.+++. 
T Consensus       476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~------~f~~v~~~~l~-  548 (806)
T 3cf2_A          476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISIKGPELL-  548 (806)
T ss_dssp             STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC------EEEECCHHHHH-
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC------ceEEeccchhh-
Confidence            35688999999998888876411000000 01233 67999999999999999999999877      99999877653 


Q ss_pred             hhhhhhHHh-------HHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEee
Q 036633          283 LESIKHFFD-------SLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFD  341 (550)
Q Consensus       283 ~~~~s~liG-------~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd  341 (550)
                          +.++|       .+-...++...+||||||||.+-+              .+.+.||..||.-  .         .
T Consensus       549 ----s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~--~---------~  613 (806)
T 3cf2_A          549 ----TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM--S---------T  613 (806)
T ss_dssp             ----TTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSS--C---------S
T ss_pred             ----ccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC--C---------C
Confidence                33344       333333444449999999997632              3678888888743  2         1


Q ss_pred             cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhc
Q 036633          342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNN  419 (550)
Q Consensus       342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~  419 (550)
                      ..+++||+|||..                     ..++|+++.  |||..|.|.   +.+.++...|++.++.+      
T Consensus       614 ~~~V~vi~aTN~p---------------------~~lD~AllRpgRfd~~i~v~---lPd~~~R~~il~~~l~~------  663 (806)
T 3cf2_A          614 KKNVFIIGATNRP---------------------DIIDPAILRPGRLDQLIYIP---LPDEKSRVAILKANLRK------  663 (806)
T ss_dssp             SSSEEEECC-CCS---------------------SSSCHHHHSTTTSCCEEEC--------CHHHHTTTTTSSC------
T ss_pred             CCCEEEEEeCCCc---------------------hhCCHhHcCCCcceEEEEEC---CcCHHHHHHHHHHHhcC------
Confidence            1567899999975                     578999996  999999999   77888888888776632      


Q ss_pred             cCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          420 DSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       420 ~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                         . .+.-+ --++.|++..-   |.+|.+|..+++.
T Consensus       664 ---~-~~~~~-~dl~~la~~t~---g~SGadi~~l~~~  693 (806)
T 3cf2_A          664 ---S-PVAKD-VDLEFLAKMTN---GFSGADLTEICQR  693 (806)
T ss_dssp             ---C---CCC--------------------CHHHHHHH
T ss_pred             ---C-CCCCC-CCHHHHHHhCC---CCCHHHHHHHHHH
Confidence               1 11111 12455665332   2244788888887

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.49  E-value=3.3e-14  Score=160.86  Aligned_cols=193  Identities=18%  Similarity=0.265  Sum_probs=131.9

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +.|.|.+++++.|.+.+...+.     ...|+   ..|..+||+||||||||++|+++|..+..      +|+.++++++
T Consensus       204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~---~~p~GILL~GPPGTGKT~LAraiA~elg~------~~~~v~~~~l  274 (806)
T 3cf2_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGV---KPPRGILLYGPPGTGKTLIARAVANETGA------FFFLINGPEI  274 (806)
T ss_dssp             GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCC---CCCCEEEEECCTTSCHHHHHHHHHTTTTC------EEEEEEHHHH
T ss_pred             hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCC---CCCCeEEEECCCCCCHHHHHHHHHHHhCC------eEEEEEhHHh
Confidence            5689999999988887754211     11222   12378999999999999999999999877      9999998876


Q ss_pred             Cchhh---hhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          281 TELES---IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       281 ~~~~~---~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                      .....   ...+-..|..|....| +||||||||.+-           ..+.+.|+..++.-  .         .-.+++
T Consensus       275 ~sk~~gese~~lr~lF~~A~~~~P-sIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~--~---------~~~~V~  342 (806)
T 3cf2_A          275 MSKLAGESESNLRKAFEEAEKNAP-AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL--K---------QRAHVI  342 (806)
T ss_dssp             HSSCTTHHHHHHHHHHHHHTTSCS-EEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC--C---------GGGCEE
T ss_pred             hcccchHHHHHHHHHHHHHHHcCC-eEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc--c---------ccCCEE
Confidence            43211   1111113334433344 899999999764           34677788777643  2         114678


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV  424 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~  424 (550)
                      ||+|||..                     ..++|+|+.  |||..|.|.   +.+.++...|++.++.         +. 
T Consensus       343 VIaaTN~~---------------------d~LD~ALrR~GRFd~~I~i~---~Pd~~~R~~IL~~~l~---------~~-  388 (806)
T 3cf2_A          343 VMAATNRP---------------------NSIDPALRRFGRFDREVDIG---IPDATGRLEILQIHTK---------NM-  388 (806)
T ss_dssp             EEEECSST---------------------TTSCTTTTSTTSSCEEEECC---CCCHHHHHHHHHHTCS---------SS-
T ss_pred             EEEecCCh---------------------hhcCHHHhCCcccceEEecC---CCCHHHHHHHHHHHhc---------CC-
Confidence            99999974                     467888886  999999999   8899999999886652         22 


Q ss_pred             cccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .+. ++--+..|+....   |.++.+|..+++.
T Consensus       389 ~~~-~dvdl~~lA~~T~---GfsgaDL~~Lv~e  417 (806)
T 3cf2_A          389 KLA-DDVDLEQVANETH---GHVGADLAALCSE  417 (806)
T ss_dssp             EEC-TTCCHHHHHHHCC---SCCHHHHHHHHHH
T ss_pred             CCC-cccCHHHHHHhcC---CCCHHHHHHHHHH
Confidence            221 1112556666432   3355888888876

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.49  E-value=7e-14  Score=130.00  Aligned_cols=157  Identities=12%  Similarity=0.168  Sum_probs=105.8

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCC
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNY  280 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~  280 (550)
                      -..++|+++.++.+...+...           .+.+++|+||||||||++|+.+++.+....    ....+++.++++.+
T Consensus        21 ~~~~~g~~~~~~~l~~~l~~~-----------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (195)
T 1jbk_A           21 LDPVIGRDEEIRRTIQVLQRR-----------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL   89 (195)
T ss_dssp             SCCCCSCHHHHHHHHHHHTSS-----------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred             ccccccchHHHHHHHHHHhcC-----------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH
Confidence            467999999999988887654           456889999999999999999999984310    01347788887655


Q ss_pred             Cchhh----hhhHHhHHHHHH-HhCCCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633          281 TELES----IKHFFDSLAALV-KKRPYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLI  347 (550)
Q Consensus       281 ~~~~~----~s~liG~lt~al-~~~p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii  347 (550)
                      .....    ....+..+...+ +.....||+|||++.+.        ..+++.|..+++.+  .             +.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~--~-------------~~~  154 (195)
T 1jbk_A           90 VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG--E-------------LHC  154 (195)
T ss_dssp             HTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT--S-------------CCE
T ss_pred             hccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC--C-------------eEE
Confidence            32111    111111222323 23444699999999985        44588888888766  3             337


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR  407 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~  407 (550)
                      |+|||......                .-..++.|.+|++ .|.|.   +++.++...|+
T Consensus       155 i~~~~~~~~~~----------------~~~~~~~l~~r~~-~i~~~---~p~~~~~~~il  194 (195)
T 1jbk_A          155 VGATTLDEYRQ----------------YIEKDAALERRFQ-KVFVA---EPSVEDTIAIL  194 (195)
T ss_dssp             EEEECHHHHHH----------------HTTTCHHHHTTEE-EEECC---CCCHHHHHTTC
T ss_pred             EEeCCHHHHHH----------------HHhcCHHHHHHhc-eeecC---CCCHHHHHHHh
Confidence            77777421100                0135789999996 78999   88998877654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.49  E-value=1.5e-13  Score=148.47  Aligned_cols=195  Identities=21%  Similarity=0.251  Sum_probs=126.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCC--cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSS--RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~--~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~  283 (550)
                      +.|+|+++++..+.+.+..... ..-+.+  ..-|..++|+||||||||++|++||..+..      +++.++++++.+.
T Consensus        31 ~dv~G~~~~k~~l~~lv~~l~~-~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~------~~i~i~g~~~~~~  103 (499)
T 2dhr_A           31 KDVAGAEEAKEELKEIVEFLKN-PSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV------PFITASGSDFVEM  103 (499)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHC-GGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC------CEEEEEGGGGTSS
T ss_pred             HHcCCcHHHHHHHHHHHHHhhc-hhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC------CEEEEehhHHHHh
Confidence            5699999999888776653200 000111  112445999999999999999999998765      8999999887643


Q ss_pred             hh--hhhHHhHHHHHHHhCCCCeEEeccccccCH--------------HHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633          284 ES--IKHFFDSLAALVKKRPYSVVLFDKIEKANS--------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLI  347 (550)
Q Consensus       284 ~~--~s~liG~lt~al~~~p~~VlllDEIeka~~--------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii  347 (550)
                      ..  ...-++.+.+..+....+++|||||+.+.+              ..++.|+..++.+  . -        -+.+++
T Consensus       104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~--~-~--------~~~viv  172 (499)
T 2dhr_A          104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF--E-K--------DTAIVV  172 (499)
T ss_dssp             CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC--C-S--------SCCCEE
T ss_pred             hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc--c-c--------CccEEE
Confidence            21  001111111111112237999999987632              4566777777766  3 1        145678


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                      +++||..                     ..++|++++  |+|..|.|.   +++.++...|+..++         .+.  
T Consensus       173 iAatn~p---------------------~~LD~aLlr~gRfdr~i~i~---~Pd~~~R~~IL~~~~---------~~~--  217 (499)
T 2dhr_A          173 MAATNRP---------------------DILDPALLRPGRFDRQIAID---APDVKGREQILRIHA---------RGK--  217 (499)
T ss_dssp             EECCSCG---------------------GGSCTTTSSTTSSCCEEECC---CCCHHHHHHHHHHTT---------SSS--
T ss_pred             EEecCCh---------------------hhcCcccccccccceEEecC---CCCHHHHHHHHHHHH---------hcC--
Confidence            8888864                     346778876  899999999   788888888876544         222  


Q ss_pred             ccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          426 VCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       426 l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                       .+++++ +..|+. .|+  |..+|+|+++++.
T Consensus       218 -~l~~dv~l~~lA~-~t~--G~~gadL~~lv~~  246 (499)
T 2dhr_A          218 -PLAEDVDLALLAK-RTP--GFVGADLENLLNE  246 (499)
T ss_dssp             -CCCCSSTTHHHHT-TSC--SCCHHHHHHHHHH
T ss_pred             -CCChHHHHHHHHH-hcC--CCCHHHHHHHHHH
Confidence             334443 556665 334  5233999999886

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.47  E-value=3.9e-13  Score=132.64  Aligned_cols=193  Identities=22%  Similarity=0.264  Sum_probs=123.9

Q ss_pred             CcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +.++|+++++..+.+.......    ...++   .-|..++|+||||||||+++++++..+..      +++.++++.+.
T Consensus        16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~---~~~~g~ll~G~~G~GKTtl~~~i~~~~~~------~~i~~~~~~~~   86 (254)
T 1ixz_A           16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA---RIPKGVLLVGPPGVGKTHLARAVAGEARV------PFITASGSDFV   86 (254)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTC---CCCSEEEEECCTTSSHHHHHHHHHHHTTC------CEEEEEHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCC---CCCCeEEEECCCCCCHHHHHHHHHHHhCC------CEEEeeHHHHH
Confidence            4588999888777665443200    01112   12334999999999999999999998765      88999876543


Q ss_pred             chh--hhhhHHhHHHHHHHhCCCCeEEeccccccC--------------HHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633          282 ELE--SIKHFFDSLAALVKKRPYSVVLFDKIEKAN--------------SSILNLLLKILKTDFNRKATRGIAAFDLTNT  345 (550)
Q Consensus       282 ~~~--~~s~liG~lt~al~~~p~~VlllDEIeka~--------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~  345 (550)
                      ...  .....++.+.+.......+++++|||+.+.              ...++.++..++.|  . -        -+..
T Consensus        87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~--~-~--------~~~~  155 (254)
T 1ixz_A           87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF--E-K--------DTAI  155 (254)
T ss_dssp             HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC--C-T--------TCCE
T ss_pred             HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCC--C-C--------CCCE
Confidence            211  111122333333333334799999997542              13456777777766  3 1        1346


Q ss_pred             EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      ++++++|..                     ..++|+++.  |++..|.|.   +++.++...|+...+         .+.
T Consensus       156 i~~a~t~~p---------------------~~ld~~l~r~~rf~~~i~i~---~p~~~~r~~il~~~~---------~~~  202 (254)
T 1ixz_A          156 VVMAATNRP---------------------DILDPALLRPGRFDRQIAID---APDVKGREQILRIHA---------RGK  202 (254)
T ss_dssp             EEEEEESCG---------------------GGSCGGGGSTTSSCEEEECC---SCCHHHHHHHHHHHH---------TTS
T ss_pred             EEEEccCCc---------------------hhCCHHHcCCCcCCeEEeeC---CcCHHHHHHHHHHHH---------cCC
Confidence            777888863                     356788886  899999999   888899988887554         222


Q ss_pred             ccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          424 VIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       424 ~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                         .+++++ ...|+... +  |.++|+|+++++.
T Consensus       203 ---~~~~~~~~~~la~~~-~--G~~~~dl~~~~~~  231 (254)
T 1ixz_A          203 ---PLAEDVDLALLAKRT-P--GFVGADLENLLNE  231 (254)
T ss_dssp             ---CBCTTCCHHHHHHTC-T--TCCHHHHHHHHHH
T ss_pred             ---CCCcccCHHHHHHHc-C--CCCHHHHHHHHHH
Confidence               233333 56677643 3  5345999999996

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.47  E-value=3.3e-13  Score=140.04  Aligned_cols=202  Identities=14%  Similarity=0.127  Sum_probs=138.4

Q ss_pred             hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCC---CCceeEEecCCC
Q 036633          204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDN---DNHLIHFDMGNY  280 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~---~~~li~id~s~~  280 (550)
                      ....++|++..++.+...+...   ..    ...+.+++|+||+|||||++++.+++.+..   .   ..+++.++|+..
T Consensus        18 ~p~~~~gr~~e~~~l~~~l~~~---~~----~~~~~~vli~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~~~i~~~~~   87 (386)
T 2qby_A           18 IPDELPHREDQIRKIASILAPL---YR----EEKPNNIFIYGLTGTGKTAVVKFVLSKLHK---KFLGKFKHVYINTRQI   87 (386)
T ss_dssp             CCSCCTTCHHHHHHHHHSSGGG---GG----TCCCCCEEEEECTTSSHHHHHHHHHHHHHH---HTCSSCEEEEEEHHHH
T ss_pred             CCCCCCChHHHHHHHHHHHHHH---Hc----CCCCCeEEEECCCCCCHHHHHHHHHHHHHH---HhcCCceEEEEECCCC
Confidence            3467999999999988887754   21    123478999999999999999999998843   2   347889998754


Q ss_pred             Cchhh-------------------hhhHHhHHHHHHHhCC-CCeEEeccccccC----HHHHHHHHHhhhhccccccccC
Q 036633          281 TELES-------------------IKHFFDSLAALVKKRP-YSVVLFDKIEKAN----SSILNLLLKILKTDFNRKATRG  336 (550)
Q Consensus       281 ~~~~~-------------------~s~liG~lt~al~~~p-~~VlllDEIeka~----~~v~~~Ll~~ld~g~~~~l~d~  336 (550)
                      .....                   ...++..+.+.+.... ..||+|||++.+.    ++++..|+..++..  .     
T Consensus        88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~--~-----  160 (386)
T 2qby_A           88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV--N-----  160 (386)
T ss_dssp             CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC--C-----
T ss_pred             CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc--C-----
Confidence            32211                   1122224444555433 4699999999875    56777777777532  1     


Q ss_pred             CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccc-eeEecCCCCCCHHHHHHHHHHHHHHHH
Q 036633          337 IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDK-LVVIDLAVPLLDTTRLLLREWACEETK  415 (550)
Q Consensus       337 g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~-ii~f~~~~pL~~e~i~~I~~~~l~~~~  415 (550)
                           -.++.+|++||...                  +...+.+.+.+|+.. .+.|.   ||+.+++..++...+..  
T Consensus       161 -----~~~~~~I~~~~~~~------------------~~~~~~~~~~~r~~~~~i~l~---~l~~~~~~~il~~~~~~--  212 (386)
T 2qby_A          161 -----KSKISFIGITNDVK------------------FVDLLDPRVKSSLSEEEIIFP---PYNAEELEDILTKRAQM--  212 (386)
T ss_dssp             -----C--EEEEEEESCGG------------------GGGGCTTHHHHTTTTEEEEEC---CCCHHHHHHHHHHHHHH--
T ss_pred             -----CCeEEEEEEECCCC------------------hHhhhCHHHhccCCCeeEEeC---CCCHHHHHHHHHHHHHh--
Confidence                 03456778777431                  013456778888863 89999   99999999999887642  


Q ss_pred             HHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          416 RRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       416 ~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                       .+  .   ...+++++.++++..+.+..| |.|.+.++++.
T Consensus       213 -~~--~---~~~~~~~~~~~l~~~~~~~~G-~~r~~~~ll~~  247 (386)
T 2qby_A          213 -AF--K---PGVLPDNVIKLCAALAAREHG-DARRALDLLRV  247 (386)
T ss_dssp             -HB--C---SSCSCHHHHHHHHHHHHHTTC-CHHHHHHHHHH
T ss_pred             -hc--c---CCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHH
Confidence             11  1   236799999999986543347 77888777775

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.45  E-value=1e-12  Score=131.73  Aligned_cols=193  Identities=22%  Similarity=0.265  Sum_probs=123.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchh----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +.++|+++++..+.+.......    ...++   .-|..++|+||||||||+++++|+..+..      +++.++++.+.
T Consensus        40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~---~~~~gvll~Gp~GtGKTtl~~~i~~~~~~------~~i~~~~~~~~  110 (278)
T 1iy2_A           40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA---RIPKGVLLVGPPGVGKTHLARAVAGEARV------PFITASGSDFV  110 (278)
T ss_dssp             GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTC---CCCCEEEEECCTTSSHHHHHHHHHHHTTC------CEEEEEHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHHHHCHHHHHHcCC---CCCCeEEEECCCcChHHHHHHHHHHHcCC------CEEEecHHHHH
Confidence            4689999998877665543200    01111   12334999999999999999999998765      89999876543


Q ss_pred             chh--hhhhHHhHHHHHHHhCCCCeEEeccccccC--------------HHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633          282 ELE--SIKHFFDSLAALVKKRPYSVVLFDKIEKAN--------------SSILNLLLKILKTDFNRKATRGIAAFDLTNT  345 (550)
Q Consensus       282 ~~~--~~s~liG~lt~al~~~p~~VlllDEIeka~--------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~  345 (550)
                      ...  .....++.+.+.......+++++|||+.+.              ....+.++..++.|  . -        -+..
T Consensus       111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg--~-~--------~~~~  179 (278)
T 1iy2_A          111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF--E-K--------DTAI  179 (278)
T ss_dssp             HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTC--C-T--------TCCE
T ss_pred             HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCC--C-C--------CCCE
Confidence            211  111223333333333344799999997542              23445555556655  2 0        1346


Q ss_pred             EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      ++++++|..                     ..++|+++.  |++..|.|.   +++.++...|+..++.         +.
T Consensus       180 i~~a~t~~p---------------------~~ld~~l~r~~rf~~~i~i~---~p~~~~r~~il~~~~~---------~~  226 (278)
T 1iy2_A          180 VVMAATNRP---------------------DILDPALLRPGRFDRQIAID---APDVKGREQILRIHAR---------GK  226 (278)
T ss_dssp             EEEEEESCT---------------------TSSCHHHHSTTSSCCEEECC---CCCHHHHHHHHHHHHT---------TS
T ss_pred             EEEEecCCc---------------------hhCCHhHcCCCcCCeEEEeC---CcCHHHHHHHHHHHHc---------cC
Confidence            778888864                     457888886  899999999   8889999998876542         22


Q ss_pred             ccccCCHHH-HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          424 VIVCPSTSA-LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       424 ~~l~~~~~a-~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                         .+++++ +..|+.. ++  |.++|+|+++++.
T Consensus       227 ---~~~~~~~~~~la~~-~~--G~~~~dl~~l~~~  255 (278)
T 1iy2_A          227 ---PLAEDVDLALLAKR-TP--GFVGADLENLLNE  255 (278)
T ss_dssp             ---CBCTTCCHHHHHHT-CT--TCCHHHHHHHHHH
T ss_pred             ---CCCcccCHHHHHHH-cC--CCCHHHHHHHHHH
Confidence               233333 5666663 33  5344899999986

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.41  E-value=7.9e-13  Score=122.64  Aligned_cols=149  Identities=13%  Similarity=0.181  Sum_probs=99.1

Q ss_pred             hhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEec
Q 036633          202 GRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDM  277 (550)
Q Consensus       202 ~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~  277 (550)
                      ..--..++|++..+..+...+...           .+.+++|+||||||||++|+.+++.+...+    ....+++.+++
T Consensus        18 ~~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (187)
T 2p65_A           18 AGKLDPVIGRDTEIRRAIQILSRR-----------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL   86 (187)
T ss_dssp             TTCSCCCCSCHHHHHHHHHHHTSS-----------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred             ccccchhhcchHHHHHHHHHHhCC-----------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence            334467999999999988887654           346789999999999999999999884310    01346777777


Q ss_pred             CCCCchh----hhhhHHhHHHHHHHhC-CCCeEEeccccccC---------HHHHHHHHHhhhhccccccccCCeEeecC
Q 036633          278 GNYTELE----SIKHFFDSLAALVKKR-PYSVVLFDKIEKAN---------SSILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       278 s~~~~~~----~~s~liG~lt~al~~~-p~~VlllDEIeka~---------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      +.+....    .....+..+...+... ...||+|||++.+.         .++++.|..+++.+  .            
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~--~------------  152 (187)
T 2p65_A           87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG--E------------  152 (187)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT--C------------
T ss_pred             HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcC--C------------
Confidence            6543111    1111112223333333 34699999999987         67888888888777  3            


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~  393 (550)
                       +++|+|+|......                ...+.+.|.+||+ .|.+.
T Consensus       153 -~~ii~~~~~~~~~~----------------~~~~~~~l~~R~~-~i~i~  184 (187)
T 2p65_A          153 -LRCIGATTVSEYRQ----------------FIEKDKALERRFQ-QILVE  184 (187)
T ss_dssp             -SCEEEEECHHHHHH----------------HTTTCHHHHHHEE-EEECC
T ss_pred             -eeEEEecCHHHHHH----------------HHhccHHHHHhcC-cccCC
Confidence             34788887421100                0235789999996 57777

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.40  E-value=1.8e-12  Score=149.55  Aligned_cols=182  Identities=15%  Similarity=0.190  Sum_probs=115.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      ..++|+++.+..+...+.+.           .+.+++|+||||||||++|+.+|..+....    ....+++.+||+.+.
T Consensus       170 d~viGr~~~i~~l~~~l~~~-----------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~  238 (854)
T 1qvr_A          170 DPVIGRDEEIRRVIQILLRR-----------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL  238 (854)
T ss_dssp             CCCCSCHHHHHHHHHHHHCS-----------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----
T ss_pred             cccCCcHHHHHHHHHHHhcC-----------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhh
Confidence            56999999999999988754           345789999999999999999999884310    014478999998775


Q ss_pred             chhhh----hhHHhHHHHHHHhC-CCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633          282 ELESI----KHFFDSLAALVKKR-PYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLII  348 (550)
Q Consensus       282 ~~~~~----s~liG~lt~al~~~-p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI  348 (550)
                      .....    ...+..+...+... ...||||||++.+.        .++++.|.++++.|  .             ..+|
T Consensus       239 ~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~-------------i~~I  303 (854)
T 1qvr_A          239 AGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--E-------------LRLI  303 (854)
T ss_dssp             -------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--C-------------CCEE
T ss_pred             ccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--C-------------eEEE
Confidence            32111    01111223333332 34699999999987        67788899999888  4             2267


Q ss_pred             EeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccC
Q 036633          349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCP  428 (550)
Q Consensus       349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~  428 (550)
                      ++||.+...              .   -...|+|.+||+ .|.|.   +++.++...|+...+..+..   .+++   .+
T Consensus       304 ~at~~~~~~--------------~---~~~d~aL~rRf~-~i~l~---~p~~~e~~~iL~~~~~~~~~---~~~~---~i  356 (854)
T 1qvr_A          304 GATTLDEYR--------------E---IEKDPALERRFQ-PVYVD---EPTVEETISILRGLKEKYEV---HHGV---RI  356 (854)
T ss_dssp             EEECHHHHH--------------H---HTTCTTTCSCCC-CEEEC---CCCHHHHHHHHHHHHHHHHH---HTTC---EE
T ss_pred             EecCchHHh--------------h---hccCHHHHhCCc-eEEeC---CCCHHHHHHHHHhhhhhhhh---hcCC---CC
Confidence            777743110              0   134788999995 68999   89999999999887765543   2444   78


Q ss_pred             CHHHHHHHHhcC
Q 036633          429 STSALVHIASNA  440 (550)
Q Consensus       429 ~~~a~~~L~~~~  440 (550)
                      +++++.+++..+
T Consensus       357 ~~~al~~~~~ls  368 (854)
T 1qvr_A          357 SDSAIIAAATLS  368 (854)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            899988887743

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.39  E-value=7.2e-13  Score=151.09  Aligned_cols=177  Identities=15%  Similarity=0.187  Sum_probs=113.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      ..++|++..+..+...+.+.           .+.++||+||||||||++|+++|+.+...+    ....+++.+|++. .
T Consensus       180 d~iiG~~~~i~~l~~~l~~~-----------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~-~  247 (758)
T 3pxi_A          180 DPVIGRSKEIQRVIEVLSRR-----------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT-K  247 (758)
T ss_dssp             CCCCCCHHHHHHHHHHHHCS-----------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------
T ss_pred             CCccCchHHHHHHHHHHhCC-----------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc-c
Confidence            46999999999999988765           446899999999999999999999984411    1234777778711 0


Q ss_pred             chhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHh
Q 036633          282 ELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEV  361 (550)
Q Consensus       282 ~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~  361 (550)
                      .......-+..+.+.+.....+|||||    ...+.++.|+++++.|  .             .++|+|||...-.-   
T Consensus       248 ~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~--~-------------v~~I~at~~~~~~~---  305 (758)
T 3pxi_A          248 YRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG--E-------------LQCIGATTLDEYRK---  305 (758)
T ss_dssp             -----CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS--S-------------CEEEEECCTTTTHH---
T ss_pred             ccchHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcC--C-------------EEEEeCCChHHHHH---
Confidence            001111111133344444566899999    6678999999999888  3             34788888642100   


Q ss_pred             hhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633          362 MLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN  439 (550)
Q Consensus       362 ~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~  439 (550)
                                   .-..+|+|.+|| .+|.|.   +++.+++..|+...+..+..   ..   .+.++++++.+++..
T Consensus       306 -------------~~~~d~al~rRf-~~i~v~---~p~~~~~~~il~~~~~~~~~---~~---~~~i~~~al~~~~~~  360 (758)
T 3pxi_A          306 -------------YIEKDAALERRF-QPIQVD---QPSVDESIQILQGLRDRYEA---HH---RVSITDDAIEAAVKL  360 (758)
T ss_dssp             -------------HHTTCSHHHHSE-EEEECC---CCCHHHHHHHHHHTTTTSGG---GS---SCSCCHHHHHHHHHH
T ss_pred             -------------HhhccHHHHhhC-cEEEeC---CCCHHHHHHHHHHHHHHHHH---hc---CCCCCHHHHHHHHHH
Confidence                         013589999999 689999   88999999999865533211   13   347899998888764

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.39  E-value=4.5e-12  Score=127.01  Aligned_cols=198  Identities=21%  Similarity=0.241  Sum_probs=128.7

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..|.|.+++++.+.+.+.....     ...|+.   -|..++|+||||||||++|++||..+..      +++.++.+++
T Consensus        10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~---~~~GvlL~Gp~GtGKTtLakala~~~~~------~~i~i~g~~l   80 (274)
T 2x8a_A           10 ADIGALEDIREELTMAILAPVRNPDQFKALGLV---TPAGVLLAGPPGCGKTLLAKAVANESGL------NFISVKGPEL   80 (274)
T ss_dssp             --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCC---CCSEEEEESSTTSCHHHHHHHHHHHTTC------EEEEEETTTT
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC---CCCeEEEECCCCCcHHHHHHHHHHHcCC------CEEEEEcHHH
Confidence            4578888888887776643310     012332   2333999999999999999999998765      7999998877


Q ss_pred             Cchh--hhhhHHhHHHHHHHhCCCCeEEeccccccC-----------HHHHHHHHHhhhhccccccccCCeEeecCCeEE
Q 036633          281 TELE--SIKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLI  347 (550)
Q Consensus       281 ~~~~--~~s~liG~lt~al~~~p~~VlllDEIeka~-----------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~ii  347 (550)
                      ....  ...+.++.+.+..+....+++|+||++...           ..+.+.++..|+.|+-.           +.+++
T Consensus        81 ~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~-----------~~~i~  149 (274)
T 2x8a_A           81 LNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR-----------QQVFI  149 (274)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST-----------TCEEE
T ss_pred             HhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc-----------CCEEE
Confidence            5432  122334443333333344899999998742           23567778888777212           55778


Q ss_pred             EEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          348 IMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       348 I~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                      ++++|..                     ..++|+++.  |||..|.|.   +.+.++...|++.++..      ....  
T Consensus       150 ia~tn~p---------------------~~LD~al~r~gRfd~~i~~~---~P~~~~r~~il~~~~~~------~~~~--  197 (274)
T 2x8a_A          150 MAATNRP---------------------DIIDPAILRPGRLDKTLFVG---LPPPADRLAILKTITKN------GTKP--  197 (274)
T ss_dssp             EEEESCG---------------------GGSCHHHHSTTSSCEEEECC---SCCHHHHHHHHHHHTTT------TBTT--
T ss_pred             EeecCCh---------------------hhCCHhhcCcccCCeEEEeC---CcCHHHHHHHHHHHHhc------ccCC--
Confidence            8888864                     467888986  999999999   88999999998876532      0111  


Q ss_pred             ccCCHH-HHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          426 VCPSTS-ALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       426 l~~~~~-a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                       .++.+ ..+.|+.... .-|..|.+|..+++.
T Consensus       198 -~~~~~~~~~~la~~~~-~~g~sgadl~~l~~~  228 (274)
T 2x8a_A          198 -PLDADVNLEAIAGDLR-CDCYTGADLSALVRE  228 (274)
T ss_dssp             -BBCTTCCHHHHHTCSG-GGSCCHHHHHHHHHH
T ss_pred             -CCccccCHHHHHHhhc-cCCcCHHHHHHHHHH
Confidence             12211 2455665311 012255889999887

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.35  E-value=7.8e-12  Score=142.54  Aligned_cols=181  Identities=14%  Similarity=0.220  Sum_probs=125.1

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      ..++|++..+..+...+.+.           .+.+++|+||||||||++|+.+|..+...+    .....++.+|++.+.
T Consensus       186 d~~iGr~~~i~~l~~~l~~~-----------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~  254 (758)
T 1r6b_X          186 DPLIGREKELERAIQVLCRR-----------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL  254 (758)
T ss_dssp             CCCCSCHHHHHHHHHHHTSS-----------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---
T ss_pred             CCccCCHHHHHHHHHHHhcc-----------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh
Confidence            56999999999998888754           346889999999999999999999884311    013357777777654


Q ss_pred             chhh----hhhHHhHHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633          282 ELES----IKHFFDSLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLII  348 (550)
Q Consensus       282 ~~~~----~s~liG~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI  348 (550)
                      ....    ....+..+.+.+...+.+||||||++.+         ..+.++.|.++++.|  .             ..+|
T Consensus       255 ~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~--~-------------~~~I  319 (758)
T 1r6b_X          255 AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG--K-------------IRVI  319 (758)
T ss_dssp             CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC--C-------------CEEE
T ss_pred             ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC--C-------------eEEE
Confidence            2211    1111123333444455689999999987         456778888888777  3             3477


Q ss_pred             EeCCCChHHHHHhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633          349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV  426 (550)
Q Consensus       349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l  426 (550)
                      .+||...                  ..+.|  +|.|.+||+ .|.|.   +++.++...|+...+..+...   +   .+
T Consensus       320 ~at~~~~------------------~~~~~~~d~aL~~Rf~-~i~v~---~p~~~e~~~il~~l~~~~~~~---~---~v  371 (758)
T 1r6b_X          320 GSTTYQE------------------FSNIFEKDRALARRFQ-KIDIT---EPSIEETVQIINGLKPKYEAH---H---DV  371 (758)
T ss_dssp             EEECHHH------------------HHCCCCCTTSSGGGEE-EEECC---CCCHHHHHHHHHHHHHHHHHH---H---TC
T ss_pred             EEeCchH------------------HhhhhhcCHHHHhCce-EEEcC---CCCHHHHHHHHHHHHHHHHHh---c---CC
Confidence            7777421                  12344  578999995 89999   999999999998777654432   3   34


Q ss_pred             cCCHHHHHHHHhcC
Q 036633          427 CPSTSALVHIASNA  440 (550)
Q Consensus       427 ~~~~~a~~~L~~~~  440 (550)
                      .+++++++.++..+
T Consensus       372 ~~~~~al~~~~~~s  385 (758)
T 1r6b_X          372 RYTAKAVRAAVELA  385 (758)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHh
Confidence            78999998888643

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=99.19  E-value=7.5e-11  Score=124.78  Aligned_cols=226  Identities=8%  Similarity=-0.059  Sum_probs=131.1

Q ss_pred             HHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHH-HHHhccCCCCCCcee
Q 036633          196 RYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAI-ANELYDNNDNDNHLI  273 (550)
Q Consensus       196 ~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~l-a~~l~~~~~~~~~li  273 (550)
                      .+..+...+.. |+||+.++..+.-++...      ... .+. .++|+.|+||| ||.+|+.+ ++.+.+   .  .+.
T Consensus       204 ~~~~l~~sIap-I~G~e~vK~aLll~L~GG------~~k-~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR---~--~ft  269 (506)
T 3f8t_A          204 PLTTFARAIAP-LPGAEEVGKMLALQLFSC------VGK-NSERLHVLLAGYPVV-CSEILHHVLDHLAPR---G--VYV  269 (506)
T ss_dssp             HHHHHHHHHCC-STTCHHHHHHHHHHHTTC------CSS-GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS---E--EEE
T ss_pred             HHHHHHHHhcc-cCCCHHHHHHHHHHHcCC------ccc-cCCceeEEEECCCCh-HHHHHHHHHHHhCCC---e--EEe
Confidence            35677788889 999999887776666543      111 122 58999999999 99999999 877644   0  111


Q ss_pred             EEecCC---CC----chhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          274 HFDMGN---YT----ELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       274 ~id~s~---~~----~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                      ...++.   +.    +.....---|.+    ....++|+|+|||+++++..|..|+++|++|  . ++-.|. .--.++.
T Consensus       270 ~g~~ss~~gLt~s~r~~tG~~~~~G~l----~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~--~-VtI~G~-~lparf~  341 (506)
T 3f8t_A          270 DLRRTELTDLTAVLKEDRGWALRAGAA----VLADGGILAVDHLEGAPEPHRWALMEAMDKG--T-VTVDGI-ALNARCA  341 (506)
T ss_dssp             EGGGCCHHHHSEEEEESSSEEEEECHH----HHTTTSEEEEECCTTCCHHHHHHHHHHHHHS--E-EEETTE-EEECCCE
T ss_pred             cCCCCCccCceEEEEcCCCcccCCCee----EEcCCCeeehHhhhhCCHHHHHHHHHHHhCC--c-EEECCE-EcCCCeE
Confidence            111110   00    000000001222    2234589999999999999999999999999  5 544455 2234577


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHH-----HH-HHHHHHHHHHHHhcc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTR-----LL-LREWACEETKRRNND  420 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i-----~~-I~~~~l~~~~~~l~~  420 (550)
                      ||+|+|.-. ....   +.  . .   -.-.+++++++|||-++...   .+...+.     .. +-...+.++....++
T Consensus       342 VIAA~NP~~-~yd~---~~--s-~---~~~~Lp~alLDRFDLi~i~~---d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~  408 (506)
T 3f8t_A          342 VLAAINPGE-QWPS---DP--P-I---ARIDLDQDFLSHFDLIAFLG---VDPRPGEPEEQDTEVPSYTLLRRYLLYAIR  408 (506)
T ss_dssp             EEEEECCCC---CC---SC--G-G---GGCCSCHHHHTTCSEEEETT---C--------------CCHHHHHHHHHHHHH
T ss_pred             EEEEeCccc-ccCC---CC--C-c---cccCCChHHhhheeeEEEec---CCCChhHhhcccCCCCCHHHHHHHHHHHHh
Confidence            999999854 1100   00  0 0   02367999999998766554   3322111     00 111122222222221


Q ss_pred             CCCccccCCHHHHHHHHhcCc--------------ccCCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSALVHIASNAA--------------RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~~~~--------------~~~GaN~R~L~~~i~~  457 (550)
                      ..+ ...+++++.++|.+...              ..+|+..|.+..++.-
T Consensus       409 ~~~-~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRl  458 (506)
T 3f8t_A          409 EHP-APELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERL  458 (506)
T ss_dssp             HCS-CCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHH
T ss_pred             cCC-CceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHH
Confidence            233 56889999988875311              1235555878777774

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.10  E-value=2.7e-10  Score=119.58  Aligned_cols=211  Identities=12%  Similarity=0.087  Sum_probs=131.3

Q ss_pred             hcCcccCcHHHHHHHHHHH-hcchhhhcCCCCcCCCeeEEE--eccCCCcHHHHHHHHHHHhccCC---CCCCceeEEec
Q 036633          204 LKKRVFGQNDAIDVIFEAL-TKPKAAKKGLSSRRQLGLFLF--AGPNCSGKAELAKAIANELYDNN---DNDNHLIHFDM  277 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l-~~~~~~~~gl~~~~~p~~lLf--~Gp~GvGKT~lAk~la~~l~~~~---~~~~~li~id~  277 (550)
                      ....++|.+..++.+...+ ...   ..|..  ..+.++++  +||+|||||++++.+++.+....   .....++.++|
T Consensus        20 ~p~~l~gR~~el~~l~~~l~~~~---~~~~~--~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (412)
T 1w5s_A           20 IPPELRVRRGEAEALARIYLNRL---LSGAG--LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA   94 (412)
T ss_dssp             CCSSCSSSCHHHHHHHHHHHHHH---HTSSC--BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred             CCCCCCChHHHHHHHHHHHhHHH---hcCCC--CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence            4477999999999999988 654   32210  23468888  99999999999999998874300   00235788888


Q ss_pred             CCCCchhhh-h------------------hHHhHHHHHHHh-CCCCeEEeccccccC------HHHHHHHHHhhhhcccc
Q 036633          278 GNYTELESI-K------------------HFFDSLAALVKK-RPYSVVLFDKIEKAN------SSILNLLLKILKTDFNR  331 (550)
Q Consensus       278 s~~~~~~~~-s------------------~liG~lt~al~~-~p~~VlllDEIeka~------~~v~~~Ll~~ld~g~~~  331 (550)
                      ........+ .                  .++..+...+.. ....||+|||++.+.      .+++..|++.+++.  .
T Consensus        95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~--~  172 (412)
T 1w5s_A           95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI--P  172 (412)
T ss_dssp             GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS--C
T ss_pred             CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc--c
Confidence            654322111 1                  111233333432 223689999999864      47777777777643  1


Q ss_pred             ccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCC---hhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633          332 KATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFK---PSLLKLLDKLVVIDLAVPLLDTTRLLLRE  408 (550)
Q Consensus       332 ~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~---p~ll~Rid~ii~f~~~~pL~~e~i~~I~~  408 (550)
                       ....     -.++.+|+|||...  ..                ..+.   +.+.+++...+.|.   ||+.+++..++.
T Consensus       173 -~~~~-----~~~v~lI~~~~~~~--~~----------------~~l~~~~~~~~~~~~~~i~l~---~l~~~e~~~ll~  225 (412)
T 1w5s_A          173 -SRDG-----VNRIGFLLVASDVR--AL----------------SYMREKIPQVESQIGFKLHLP---AYKSRELYTILE  225 (412)
T ss_dssp             -CTTS-----CCBEEEEEEEEETH--HH----------------HHHHHHCHHHHTTCSEEEECC---CCCHHHHHHHHH
T ss_pred             -cCCC-----CceEEEEEEecccc--HH----------------HHHhhhcchhhhhcCCeeeeC---CCCHHHHHHHHH
Confidence             1000     03456777776321  10                0112   44556655558888   999999999988


Q ss_pred             HHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccC---CCcccHHHHHHcc
Q 036633          409 WACEETKRRNNDSKAVIVCPSTSALVHIASNAARKY---GQNGEGLKRWMDQ  457 (550)
Q Consensus       409 ~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~---GaN~R~L~~~i~~  457 (550)
                      ..+...       +. ...+++++...+...+.+..   | |.|.+..++..
T Consensus       226 ~~~~~~-------~~-~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~  268 (412)
T 1w5s_A          226 QRAELG-------LR-DTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKM  268 (412)
T ss_dssp             HHHHHH-------BC-TTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHH
T ss_pred             HHHHhc-------CC-CCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHH
Confidence            766431       11 23578999999987654333   6 77877777664

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.08  E-value=4.2e-10  Score=104.87  Aligned_cols=149  Identities=16%  Similarity=0.104  Sum_probs=87.8

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhc-cCCCCCCceeEEecCCCCchhhhhh
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELY-DNNDNDNHLIHFDMGNYTELESIKH  288 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~-~~~~~~~~li~id~s~~~~~~~~s~  288 (550)
                      +|..++..+...+...       . ...+..++|+||||||||+++++++..+. .   ....++.+++.++.+......
T Consensus        18 ~~~~~~~~~~~~~~~~-------~-~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---~g~~~~~~~~~~~~~~~~~~~   86 (180)
T 3ec2_A           18 SQNRALLTIRVFVHNF-------N-PEEGKGLTFVGSPGVGKTHLAVATLKAIYEK---KGIRGYFFDTKDLIFRLKHLM   86 (180)
T ss_dssp             HHHHHHHHHHHHHHSC-------C-GGGCCEEEECCSSSSSHHHHHHHHHHHHHHH---SCCCCCEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc-------c-ccCCCEEEEECCCCCCHHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHHHHHHh
Confidence            4666776666655543       1 11236899999999999999999999985 3   233566667655432111000


Q ss_pred             HHh---HHHHHHHhCCCCeEEecccc--ccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhh
Q 036633          289 FFD---SLAALVKKRPYSVVLFDKIE--KANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVML  363 (550)
Q Consensus       289 liG---~lt~al~~~p~~VlllDEIe--ka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~  363 (550)
                      --+   .+...+. .| .+|+|||++  ..++..+..|.++++.-  .  .        .+..+|+|||...+.+...  
T Consensus        87 ~~~~~~~~~~~~~-~~-~llilDE~~~~~~~~~~~~~l~~ll~~~--~--~--------~~~~ii~tsn~~~~~~~~~--  150 (180)
T 3ec2_A           87 DEGKDTKFLKTVL-NS-PVLVLDDLGSERLSDWQRELISYIITYR--Y--N--------NLKSTIITTNYSLQREEES--  150 (180)
T ss_dssp             HHTCCSHHHHHHH-TC-SEEEEETCSSSCCCHHHHHHHHHHHHHH--H--H--------TTCEEEEECCCCSCC---C--
T ss_pred             cCchHHHHHHHhc-CC-CEEEEeCCCCCcCCHHHHHHHHHHHHHH--H--H--------cCCCEEEEcCCChhHhhhh--
Confidence            000   2223333 23 699999998  57788888888888654  2  0        2345788999875442100  


Q ss_pred             hhhHhhHHHHhccCCChhhhhhccc
Q 036633          364 TATYGRVNEVTGSLFKPSLLKLLDK  388 (550)
Q Consensus       364 ~~~~~~~~~~l~~~f~p~ll~Rid~  388 (550)
                         .-...+.+...|...+.+|+..
T Consensus       151 ---~~~~~~~l~~~~~~~i~~rl~~  172 (180)
T 3ec2_A          151 ---SVRISADLASRLGENVVSKIYE  172 (180)
T ss_dssp             ---HHHHHHHHHHHHCHHHHHHHHH
T ss_pred             ---ccchhhHHHHHHHHHHHHHHHh
Confidence               0001133345566677777643

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=99.01  E-value=2.3e-10  Score=108.44  Aligned_cols=105  Identities=20%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhH---HhHHHHHHHhCCCCeEEeccccccC-
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHF---FDSLAALVKKRPYSVVLFDKIEKAN-  314 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~l---iG~lt~al~~~p~~VlllDEIeka~-  314 (550)
                      .+++|+||||||||++|++++..+..   ...+++.++++++........-   +..+.+.+...  .+|+|||++..+ 
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lilDei~~~~~  129 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKV--PVLMLDDLGAEAM  129 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHS--SEEEEEEECCC--
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCC--CEEEEcCCCCCcC
Confidence            68999999999999999999999876   5567888887654321110000   01223333332  599999996644 


Q ss_pred             -HHHHHHHH-HhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          315 -SSILNLLL-KILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       315 -~~v~~~Ll-~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                       +..+..++ .+++..  .  .        .+..+|+|||.....+..
T Consensus       130 ~~~~~~~ll~~~l~~~--~--~--------~~~~~i~tsn~~~~~l~~  165 (202)
T 2w58_A          130 SSWVRDDVFGPILQYR--M--F--------ENLPTFFTSNFDMQQLAH  165 (202)
T ss_dssp             -CCGGGTTHHHHHHHH--H--H--------TTCCEEEEESSCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH--H--h--------CCCCEEEEcCCCHHHHHH
Confidence             33344333 455443  1  0        123489999988766644

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.97  E-value=4.9e-10  Score=140.41  Aligned_cols=145  Identities=11%  Similarity=0.115  Sum_probs=104.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHh---------CC-----CCe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKK---------RP-----YSV  304 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~---------~p-----~~V  304 (550)
                      .++||+||||||||.+|+.+...+     ....++.++++..+....+.   +.+...+..         .|     ..|
T Consensus      1268 ~~vLL~GPpGtGKT~la~~~l~~~-----~~~~~~~infsa~ts~~~~~---~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A         1268 RGIILCGPPGSGKTMIMNNALRNS-----SLYDVVGINFSKDTTTEHIL---SALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC-----SSCEEEEEECCTTCCHHHHH---HHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHhcC-----CCCceEEEEeecCCCHHHHH---HHHHHHhhhccccCCccccCCCCCceEE
Confidence            589999999999999995554433     23478889999887654432   222222110         11     249


Q ss_pred             EEeccccccCH------HHHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc
Q 036633          305 VLFDKIEKANS------SILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS  376 (550)
Q Consensus       305 lllDEIeka~~------~v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~  376 (550)
                      +|+|||+....      .++..|.|++|.|  . +.+.  +..+.+.++.+|+|+|.+...      .          +.
T Consensus      1340 lFiDEinmp~~d~yg~q~~lelLRq~le~g--g-~yd~~~~~~~~~~~i~lIaA~Npp~~g------G----------R~ 1400 (2695)
T 4akg_A         1340 LFCDEINLPKLDKYGSQNVVLFLRQLMEKQ--G-FWKTPENKWVTIERIHIVGACNPPTDP------G----------RI 1400 (2695)
T ss_dssp             EEEETTTCSCCCSSSCCHHHHHHHHHHHTS--S-EECTTTCCEEEEESEEEEEEECCTTST------T----------CC
T ss_pred             EEecccccccccccCchhHHHHHHHHHhcC--C-EEEcCCCcEEEecCEEEEEecCCCccC------C----------Cc
Confidence            99999876543      4899999999988  5 4443  556667899999999975210      0          23


Q ss_pred             CCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH
Q 036633          377 LFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET  414 (550)
Q Consensus       377 ~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~  414 (550)
                      ..+|.|++|+ .+|.+.   +++.+++..|....+...
T Consensus      1401 ~l~~rllRrf-~vi~i~---~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A         1401 PMSERFTRHA-AILYLG---YPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp             CCCHHHHTTE-EEEECC---CCTTTHHHHHHHHHHHHH
T ss_pred             cCChhhhhee-eEEEeC---CCCHHHHHHHHHHHHHHH
Confidence            5689999999 799999   899999999999888653

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=98.92  E-value=7.1e-09  Score=106.67  Aligned_cols=165  Identities=14%  Similarity=0.058  Sum_probs=114.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCc--eeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccc-cCH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNH--LIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEK-ANS  315 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~--li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIek-a~~  315 (550)
                      .++||+||+|+||++.++.|++.+...  ...+  .+.++ +    ...+..++..+...---.++.||++||++. ++.
T Consensus        19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~-~----~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~   91 (343)
T 1jr3_D           19 AAYLLLGNDPLLLQESQDAVRQVAAAQ--GFEEHHTFSID-P----NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA   91 (343)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHHHHH--TCCEEEEEECC-T----TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT
T ss_pred             cEEEEECCcHHHHHHHHHHHHHHHHhC--CCCeeEEEEec-C----CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh
Confidence            699999999999999999999987641  1112  23333 1    123333333222111234567999999999 999


Q ss_pred             HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCC-CChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecC
Q 036633          316 SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSD-LKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDL  394 (550)
Q Consensus       316 ~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN-~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~  394 (550)
                      +.++.|++++++.  .           .++++|++++ .+...-                ...+.+.+.+|+ .++.|. 
T Consensus        92 ~~~~aLl~~le~p--~-----------~~~~~il~~~~~~~~~~----------------~~k~~~~i~sr~-~~~~~~-  140 (343)
T 1jr3_D           92 AINEQLLTLTGLL--H-----------DDLLLIVRGNKLSKAQE----------------NAAWFTALANRS-VQVTCQ-  140 (343)
T ss_dssp             THHHHHHHHHTTC--B-----------TTEEEEEEESCCCTTTT----------------TSHHHHHHTTTC-EEEEEC-
T ss_pred             HHHHHHHHHHhcC--C-----------CCeEEEEEcCCCChhhH----------------hhHHHHHHHhCc-eEEEee-
Confidence            9999999999876  4           4566666554 321000                123456788999 799999 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          395 AVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       395 ~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                        |++.+++...+...+..       .|+   .++++++++|+..+-   | |.|.+.+.+++
T Consensus       141 --~l~~~~l~~~l~~~~~~-------~g~---~i~~~a~~~l~~~~~---g-dl~~~~~elek  187 (343)
T 1jr3_D          141 --TPEQAQLPRWVAARAKQ-------LNL---ELDDAANQVLCYCYE---G-NLLALAQALER  187 (343)
T ss_dssp             --CCCTTHHHHHHHHHHHH-------TTC---EECHHHHHHHHHSST---T-CHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHH-------cCC---CCCHHHHHHHHHHhc---h-HHHHHHHHHHH
Confidence              99999999888877743       555   789999999998543   4 66878777764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.88  E-value=2.7e-09  Score=96.86  Aligned_cols=110  Identities=15%  Similarity=0.215  Sum_probs=77.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL  318 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~  318 (550)
                      .+++|+||+|+|||+++++++..+..   .....+.++..++...    .+        ...| .+|+|||++...+..+
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~~~~~~----~~--------~~~~-~lLilDE~~~~~~~~~  100 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAASMPLT----DA--------AFEA-EYLAVDQVEKLGNEEQ  100 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETTTSCCC----GG--------GGGC-SEEEEESTTCCCSHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHHHhhHH----HH--------HhCC-CEEEEeCccccChHHH
Confidence            58899999999999999999998865   3335788888777543    11        1223 7999999999988778


Q ss_pred             HHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633          319 NLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       319 ~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~  393 (550)
                      ..|+++++.-  .  ..       ..+++|+|||.....+                 ... |.+.+|+..-..+.
T Consensus       101 ~~l~~li~~~--~--~~-------g~~~iiits~~~p~~l-----------------~~~-~~L~SRl~~g~~~~  146 (149)
T 2kjq_A          101 ALLFSIFNRF--R--NS-------GKGFLLLGSEYTPQQL-----------------VIR-EDLRTRMAYCLVYE  146 (149)
T ss_dssp             HHHHHHHHHH--H--HH-------TCCEEEEEESSCTTTS-----------------SCC-HHHHHHGGGSEECC
T ss_pred             HHHHHHHHHH--H--Hc-------CCcEEEEECCCCHHHc-----------------ccc-HHHHHHHhcCeeEE
Confidence            8888888643  2  10       1233677888654322                 223 88999996555443

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.86  E-value=2e-08  Score=126.16  Aligned_cols=135  Identities=17%  Similarity=0.157  Sum_probs=99.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILN  319 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~  319 (550)
                      ..++.||+|||||++++.+|+.++.      +++++||++-.+.....+   .+.++.+.  +++++|||+++++++++.
T Consensus       647 ~~~l~GpaGtGKTe~vk~LA~~lg~------~~v~~nc~e~ld~~~lg~---~~~g~~~~--Gaw~~~DE~nr~~~evLs  715 (2695)
T 4akg_A          647 GGCFFGPAGTGKTETVKAFGQNLGR------VVVVFNCDDSFDYQVLSR---LLVGITQI--GAWGCFDEFNRLDEKVLS  715 (2695)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTTC------CCEEEETTSSCCHHHHHH---HHHHHHHH--TCEEEEETTTSSCHHHHH
T ss_pred             CCcccCCCCCCcHHHHHHHHHHhCC------cEEEEECCCCCChhHhhH---HHHHHHhc--CCEeeehhhhhcChHHHH
Confidence            5678999999999999999999988      999999999887655433   34444443  379999999999999999


Q ss_pred             HH-------HHhhhhccccccccCCeEeecC-CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeE
Q 036633          320 LL-------LKILKTDFNRKATRGIAAFDLT-NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV  391 (550)
Q Consensus       320 ~L-------l~~ld~g~~~~l~d~g~~vd~~-~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~  391 (550)
                      .+       +..+.++..+ +...|..+... ++.|++|.|.|...                 ...+++.|.+|| ..|.
T Consensus       716 ~l~~~l~~i~~al~~~~~~-i~~~g~~i~l~~~~~vfiT~NPgy~g-----------------~~eLP~~Lk~~F-r~v~  776 (2695)
T 4akg_A          716 AVSANIQQIQNGLQVGKSH-ITLLEEETPLSPHTAVFITLNPGYNG-----------------RSELPENLKKSF-REFS  776 (2695)
T ss_dssp             HHHHHHHHHHHHHHHTCSE-EECSSSEEECCTTCEEEEEECCCSSS-----------------SCCCCHHHHTTE-EEEE
T ss_pred             HHHHHHHHHHHHHHcCCcE-EeeCCcEEecCCCceEEEEeCCCccC-----------------cccccHHHHhhe-EEEE
Confidence            88       3444445222 33335555543 45688899986321                 246788899999 6778


Q ss_pred             ecCCCCCCHHHHHHHH
Q 036633          392 IDLAVPLLDTTRLLLR  407 (550)
Q Consensus       392 f~~~~pL~~e~i~~I~  407 (550)
                      +.   ..+.+.+.+|+
T Consensus       777 m~---~Pd~~~i~ei~  789 (2695)
T 4akg_A          777 MK---SPQSGTIAEMI  789 (2695)
T ss_dssp             CC---CCCHHHHHHHH
T ss_pred             ee---CCCHHHHHHHH
Confidence            87   66777776664

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.75  E-value=1.9e-07  Score=95.13  Aligned_cols=173  Identities=18%  Similarity=0.215  Sum_probs=105.8

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC----
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT----  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~----  281 (550)
                      ..++|.+..++.+...+...             ..++++||+|+|||++++.+++..        ..+.++|....    
T Consensus        12 ~~~~gR~~el~~L~~~l~~~-------------~~v~i~G~~G~GKT~Ll~~~~~~~--------~~~~~~~~~~~~~~~   70 (350)
T 2qen_A           12 EDIFDREEESRKLEESLENY-------------PLTLLLGIRRVGKSSLLRAFLNER--------PGILIDCRELYAERG   70 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHHC-------------SEEEEECCTTSSHHHHHHHHHHHS--------SEEEEEHHHHHHTTT
T ss_pred             HhcCChHHHHHHHHHHHhcC-------------CeEEEECCCcCCHHHHHHHHHHHc--------CcEEEEeeccccccc
Confidence            46899999999988877532             489999999999999999998764        25566664321    


Q ss_pred             --chh------------------------------------hhhhHHhHHHHHHHhCCCCeEEeccccccC-------HH
Q 036633          282 --ELE------------------------------------SIKHFFDSLAALVKKRPYSVVLFDKIEKAN-------SS  316 (550)
Q Consensus       282 --~~~------------------------------------~~s~liG~lt~al~~~p~~VlllDEIeka~-------~~  316 (550)
                        ...                                    ....++..+.+........||+|||++.+.       ++
T Consensus        71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~  150 (350)
T 2qen_A           71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKE  150 (350)
T ss_dssp             CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhh
Confidence              000                                    011111122222222223689999999965       46


Q ss_pred             HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc-cCCChhhhhhccceeEecCC
Q 036633          317 ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG-SLFKPSLLKLLDKLVVIDLA  395 (550)
Q Consensus       317 v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~-~~f~p~ll~Rid~ii~f~~~  395 (550)
                      +...|..+++..              .++.+|+|+.... .+            ...+. ......+.+|....+.+.  
T Consensus       151 ~~~~L~~~~~~~--------------~~~~~il~g~~~~-~l------------~~~l~~~~~~~~l~~~~~~~i~l~--  201 (350)
T 2qen_A          151 LLALFAYAYDSL--------------PNLKIILTGSEVG-LL------------HDFLKITDYESPLYGRIAGEVLVK--  201 (350)
T ss_dssp             HHHHHHHHHHHC--------------TTEEEEEEESSHH-HH------------HHHHCTTCTTSTTTTCCCEEEECC--
T ss_pred             HHHHHHHHHHhc--------------CCeEEEEECCcHH-HH------------HHHHhhcCCCCccccCccceeeCC--
Confidence            777776666543              2344677654311 00            00000 112234666765688899  


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633          396 VPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN  439 (550)
Q Consensus       396 ~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~  439 (550)
                       ||+.++...++...+.       ..|.   .+++++...+...
T Consensus       202 -pl~~~e~~~~l~~~~~-------~~~~---~~~~~~~~~i~~~  234 (350)
T 2qen_A          202 -PFDKDTSVEFLKRGFR-------EVNL---DVPENEIEEAVEL  234 (350)
T ss_dssp             -CCCHHHHHHHHHHHHH-------TTTC---CCCHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHH-------HcCC---CCCHHHHHHHHHH
Confidence             9999999988776542       2344   5677777777653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.74  E-value=3.7e-09  Score=107.60  Aligned_cols=105  Identities=18%  Similarity=0.130  Sum_probs=62.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc-cCCCCCCceeEEecCCCCchhhhhhH---HhHHHHHHHhCCCCeEEecccccc-
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY-DNNDNDNHLIHFDMGNYTELESIKHF---FDSLAALVKKRPYSVVLFDKIEKA-  313 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~-~~~~~~~~li~id~s~~~~~~~~s~l---iG~lt~al~~~p~~VlllDEIeka-  313 (550)
                      .+++|+||||||||++|.+||..+. .   ...+++.++++++......+.-   ++.+...+..  ..||+|||++.. 
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~~~---~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~lLiiDdig~~~  227 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELSEK---KGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN--VPVLILDDIGAEQ  227 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHH---SCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT--SSEEEEETCCC--
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHh---cCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCC
Confidence            6899999999999999999999987 6   4457777777654221100000   0111222333  359999999554 


Q ss_pred             -CHHHHH-HHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          314 -NSSILN-LLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       314 -~~~v~~-~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                       ++..++ +|..+++..  .  .        .+..+|+|||.....+..
T Consensus       228 ~~~~~~~~ll~~ll~~r--~--~--------~~~~~IitSN~~~~~l~~  264 (308)
T 2qgz_A          228 ATSWVRDEVLQVILQYR--M--L--------EELPTFFTSNYSFADLER  264 (308)
T ss_dssp             ----CTTTTHHHHHHHH--H--H--------HTCCEEEEESSCHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHH--H--H--------CCCcEEEECCCCHHHHHH
Confidence             444444 333466543  1  0        122389999998776644

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.73  E-value=6.8e-09  Score=130.98  Aligned_cols=145  Identities=12%  Similarity=0.216  Sum_probs=104.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHH--h--------CC-----CC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVK--K--------RP-----YS  303 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~--~--------~p-----~~  303 (550)
                      .++||+||||||||.++......+     ...+++.+|+|..+....+   .|.+...+.  .        .|     ..
T Consensus      1305 ~pvLL~GptGtGKT~li~~~L~~l-----~~~~~~~infS~~Tta~~l---~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A         1305 RPLILCGPPGSGKTMTLTSTLRAF-----PDFEVVSLNFSSATTPELL---LKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp             CCCEEESSTTSSHHHHHHHHGGGC-----TTEEEEEECCCTTCCHHHH---HHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC-----CCCceEEEEeeCCCCHHHH---HHHHhhcceEEeccCCCcccCCCcCCceE
Confidence            478999999999998765443333     2236899999998865443   343322110  1        12     13


Q ss_pred             eEEeccccccCHH------HHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc
Q 036633          304 VVLFDKIEKANSS------ILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG  375 (550)
Q Consensus       304 VlllDEIeka~~~------v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~  375 (550)
                      |+|+||+....++      +...|.|++|.|  . +.|.  +..+...++.+|+|+|.+...  .              +
T Consensus      1377 VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~--g-~yd~~~~~~~~i~d~~~vaamnPp~~g--G--------------r 1437 (3245)
T 3vkg_A         1377 VVFCDEINLPSTDKYGTQRVITFIRQMVEKG--G-FWRTSDHTWIKLDKIQFVGACNPPTDA--G--------------R 1437 (3245)
T ss_dssp             EEEETTTTCCCCCTTSCCHHHHHHHHHHHHS--E-EEETTTTEEEEESSEEEEEEECCTTST--T--------------C
T ss_pred             EEEecccCCCCccccccccHHHHHHHHHHcC--C-eEECCCCeEEEecCeEEEEEcCCCCCC--C--------------C
Confidence            8999999887754      899999999988  5 5453  566677889999999975210  0              2


Q ss_pred             cCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHH
Q 036633          376 SLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEET  414 (550)
Q Consensus       376 ~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~  414 (550)
                      ..++|.|++|+ .++.+.   .++.+++..|...++..+
T Consensus      1438 ~~l~~Rf~r~F-~vi~i~---~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A         1438 VQLTHRFLRHA-PILLVD---FPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp             CCCCHHHHTTC-CEEECC---CCCHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHhhc-eEEEeC---CCCHHHHHHHHHHHHHHH
Confidence            46789999999 688888   899999999988876543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.62  E-value=4.6e-08  Score=92.83  Aligned_cols=121  Identities=15%  Similarity=0.268  Sum_probs=68.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL  318 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~  318 (550)
                      ..++|+||||||||++|.+||+.+.+      .++.+.-+.-   +.   .+..+      ....+++|||++.+.....
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~l~g------~i~~fans~s---~f---~l~~l------~~~kIiiLDEad~~~~~~~  120 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHFIQG------AVISFVNSTS---HF---WLEPL------TDTKVAMLDDATTTCWTYF  120 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHTC------EECCCCCSSS---CG---GGGGG------TTCSSEEEEEECHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCC------CeeeEEeccc---hh---hhccc------CCCCEEEEECCCchhHHHH
Confidence            57999999999999999999999976      3333221110   00   00001      1135999999985533332


Q ss_pred             -HHHHHhhhhccccccc-cC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecC
Q 036633          319 -NLLLKILKTDFNRKAT-RG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDL  394 (550)
Q Consensus       319 -~~Ll~~ld~g~~~~l~-d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~  394 (550)
                       ..+..+++..  . +. |.  ...+.....-+|+|||.....                 ...+ +.+.+|+ .++.|.-
T Consensus       121 d~~lrn~ldG~--~-~~iD~Khr~~~~~~~~PlIITtN~~~~~-----------------~~~~-~~L~SRi-~~f~F~~  178 (212)
T 1tue_A          121 DTYMRNALDGN--P-ISIDRKHKPLIQLKCPPILLTTNIHPAK-----------------DNRW-PYLESRI-TVFEFPN  178 (212)
T ss_dssp             HHHCHHHHHTC--C-EEEC----CCEEECCCCEEEEESSCTTS-----------------SSSC-HHHHTSC-EEEECCS
T ss_pred             HHHHHHHhCCC--c-ccHHHhhcCccccCCCCEEEecCCCccc-----------------ccch-hhhhhhE-EEEEcCC
Confidence             3344444432  1 11 11  111111224689999986432                 1223 5588999 6778874


Q ss_pred             CCCCC
Q 036633          395 AVPLL  399 (550)
Q Consensus       395 ~~pL~  399 (550)
                      +-|++
T Consensus       179 ~~p~~  183 (212)
T 1tue_A          179 AFPFD  183 (212)
T ss_dssp             CCCBC
T ss_pred             CCCCC
Confidence            44554

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.61  E-value=5.8e-07  Score=91.65  Aligned_cols=156  Identities=15%  Similarity=0.179  Sum_probs=97.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC-----
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY-----  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~-----  280 (550)
                      ..++|.+..++.+.. +..              ..++++||+|+|||++++.+++.+..      ..+.+++..+     
T Consensus        13 ~~~~gR~~el~~L~~-l~~--------------~~v~i~G~~G~GKT~L~~~~~~~~~~------~~~~~~~~~~~~~~~   71 (357)
T 2fna_A           13 KDFFDREKEIEKLKG-LRA--------------PITLVLGLRRTGKSSIIKIGINELNL------PYIYLDLRKFEERNY   71 (357)
T ss_dssp             GGSCCCHHHHHHHHH-TCS--------------SEEEEEESTTSSHHHHHHHHHHHHTC------CEEEEEGGGGTTCSC
T ss_pred             HHhcChHHHHHHHHH-hcC--------------CcEEEECCCCCCHHHHHHHHHHhcCC------CEEEEEchhhccccC
Confidence            468999998888776 431              38999999999999999999988744      5678888754     


Q ss_pred             Cchhh-hh------------------------------------------hHHhHHHHHHHhC--CCCeEEeccccccC-
Q 036633          281 TELES-IK------------------------------------------HFFDSLAALVKKR--PYSVVLFDKIEKAN-  314 (550)
Q Consensus       281 ~~~~~-~s------------------------------------------~liG~lt~al~~~--p~~VlllDEIeka~-  314 (550)
                      ..... ..                                          ..+..+.+.+...  ...||+|||++.+. 
T Consensus        72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~  151 (357)
T 2fna_A           72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK  151 (357)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred             CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence            11100 00                                          0111233444432  13589999999975 


Q ss_pred             ---HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhc-cCCChhhhhhcccee
Q 036633          315 ---SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTG-SLFKPSLLKLLDKLV  390 (550)
Q Consensus       315 ---~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~-~~f~p~ll~Rid~ii  390 (550)
                         +++...|..+++..              .++.+|+|++... .+            ...+. ......+.+|....+
T Consensus       152 ~~~~~~~~~l~~~~~~~--------------~~~~~i~~g~~~~-~l------------~~~l~~~~~~~~l~~r~~~~i  204 (357)
T 2fna_A          152 LRGVNLLPALAYAYDNL--------------KRIKFIMSGSEMG-LL------------YDYLRVEDPESPLFGRAFSTV  204 (357)
T ss_dssp             CTTCCCHHHHHHHHHHC--------------TTEEEEEEESSHH-HH------------HHHTTTTCTTSTTTTCCCEEE
T ss_pred             cCchhHHHHHHHHHHcC--------------CCeEEEEEcCchH-HH------------HHHHhccCCCCccccCcccee
Confidence               35556565555543              2344677665311 01            00100 112234666765688


Q ss_pred             EecCCCCCCHHHHHHHHHHHHH
Q 036633          391 VIDLAVPLLDTTRLLLREWACE  412 (550)
Q Consensus       391 ~f~~~~pL~~e~i~~I~~~~l~  412 (550)
                      .+.   ||+.++...++...+.
T Consensus       205 ~l~---~l~~~e~~~~l~~~~~  223 (357)
T 2fna_A          205 ELK---PFSREEAIEFLRRGFQ  223 (357)
T ss_dssp             EEC---CCCHHHHHHHHHHHHH
T ss_pred             ecC---CCCHHHHHHHHHHHHH
Confidence            999   9999999998887653

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.48  E-value=2e-06  Score=108.91  Aligned_cols=134  Identities=16%  Similarity=0.134  Sum_probs=97.1

Q ss_pred             EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHH
Q 036633          241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNL  320 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~  320 (550)
                      -...||+|||||++++.+|+.++.      +++.+||++-.+.....++   +.++...  ++..+||||.+++++++..
T Consensus       607 g~~~GPaGtGKTet~k~La~~lgr------~~~vfnC~~~~d~~~~g~i---~~G~~~~--GaW~cfDEfNrl~~~vLSv  675 (3245)
T 3vkg_A          607 GNPFGPAGTGKTETVKALGSQLGR------FVLVFCCDEGFDLQAMSRI---FVGLCQC--GAWGCFDEFNRLEERILSA  675 (3245)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTC------CEEEEECSSCCCHHHHHHH---HHHHHHH--TCEEEEETTTSSCHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHhCC------eEEEEeCCCCCCHHHHHHH---HhhHhhc--CcEEEehhhhcCCHHHHHH
Confidence            357899999999999999999988      9999999998776654433   3444433  4688999999999999999


Q ss_pred             HHHhhh-------hccccccccC-CeEeecC-CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeE
Q 036633          321 LLKILK-------TDFNRKATRG-IAAFDLT-NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVV  391 (550)
Q Consensus       321 Ll~~ld-------~g~~~~l~d~-g~~vd~~-~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~  391 (550)
                      +.+.+.       ++..+ +... |..+... ++.|++|.|.|...                 ...+++.+..|| ..|.
T Consensus       676 v~~qi~~I~~a~~~~~~~-~~~~~G~~i~l~~~~~vfiTmNpgY~g-----------------r~eLP~nLk~lF-r~v~  736 (3245)
T 3vkg_A          676 VSQQIQTIQVALKENSKE-VELLGGKNISLHQDMGIFVTMNPGYAG-----------------RSNLPDNLKKLF-RSMA  736 (3245)
T ss_dssp             HHHHHHHHHHHHHHTCSE-ECCC---CEECCTTCEEEECBCCCGGG-----------------CCCSCHHHHTTE-EEEE
T ss_pred             HHHHHHHHHHHHHcCCCe-EEecCCCEEeecCCeEEEEEeCCCccC-----------------cccChHHHHhhc-EEEE
Confidence            888665       11113 4433 5555443 46788899987532                 246788899999 7777


Q ss_pred             ecCCCCCCHHHHHHHH
Q 036633          392 IDLAVPLLDTTRLLLR  407 (550)
Q Consensus       392 f~~~~pL~~e~i~~I~  407 (550)
                      +.   ..+.+.+.+|+
T Consensus       737 m~---~Pd~~~i~ei~  749 (3245)
T 3vkg_A          737 MI---KPDREMIAQVM  749 (3245)
T ss_dssp             CC---SCCHHHHHHHH
T ss_pred             Ee---CCCHHHHHHHH
Confidence            77   66776666664

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.39  E-value=1.9e-06  Score=85.23  Aligned_cols=134  Identities=16%  Similarity=0.144  Sum_probs=76.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh--ccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCC-CeEEeccccccCH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL--YDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPY-SVVLFDKIEKANS  315 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l--~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~-~VlllDEIeka~~  315 (550)
                      ..++|+||||||||.+|.+||..+  ++         .++.+....  ..           ...+. .+++.||.. +-.
T Consensus       105 n~~~l~GppgtGKt~~a~ala~~~~l~G---------~vn~~~~~f--~l-----------~~~~~k~i~l~Ee~~-~~~  161 (267)
T 1u0j_A          105 NTIWLFGPATTGKTNIAEAIAHTVPFYG---------CVNWTNENF--PF-----------NDCVDKMVIWWEEGK-MTA  161 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCEE---------ECCTTCSSC--TT-----------GGGSSCSEEEECSCC-EET
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhhcccc---------eeecccccc--cc-----------ccccccEEEEecccc-chh
Confidence            689999999999999999999974  33         112221110  11           11122 355555554 445


Q ss_pred             HHHHHHHHhhhhccccccccC--CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEec
Q 036633          316 SILNLLLKILKTDFNRKATRG--IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       316 ~v~~~Ll~~ld~g~~~~l~d~--g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~  393 (550)
                      +.++.+-.+++.+..+ + |.  ......+.+-+|+|||........  ++.        ......+.|.+|+ .++.|.
T Consensus       162 d~~~~lr~i~~G~~~~-i-d~K~k~~~~v~~tPvIitsN~~i~~~~~--g~~--------~s~~~~~~L~sR~-~~f~F~  228 (267)
T 1u0j_A          162 KVVESAKAILGGSKVR-V-DQKCKSSAQIDPTPVIVTSNTNMCAVID--GNS--------TTFEHQQPLQDRM-FKFELT  228 (267)
T ss_dssp             TTHHHHHHHHTTCCEE-C-------CCEECCCCEEEEESSCTTCEEE--TTE--------EECTTHHHHHTTE-EEEECC
T ss_pred             HHHHHHHHHhCCCcEE-E-ecCcCCcccccCCCEEEEecCCcccccc--cCc--------cchhhhHHHhhhE-EEEECC
Confidence            6667777778655222 2 22  334455778899999975322000  000        0012345688999 788886


Q ss_pred             CCC-----CCCHHHHHHHHH
Q 036633          394 LAV-----PLLDTTRLLLRE  408 (550)
Q Consensus       394 ~~~-----pL~~e~i~~I~~  408 (550)
                      -+.     +++.++....+.
T Consensus       229 ~~~p~~~~~lt~~~~~~f~~  248 (267)
T 1u0j_A          229 RRLDHDFGKVTKQEVKDFFR  248 (267)
T ss_dssp             SCCCTTSCCCCHHHHHHHHH
T ss_pred             CcCCcccCCCCHHHHHHHHH
Confidence            222     466777776665

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.22  E-value=6.5e-06  Score=76.67  Aligned_cols=82  Identities=22%  Similarity=0.230  Sum_probs=51.4

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC----------------------------Cc----hhhhh
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY----------------------------TE----LESIK  287 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~----------------------------~~----~~~~s  287 (550)
                      .+.|+||+|+|||++++.|+..+.-      .+.-++..+.                            ..    .....
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i------~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGK------RAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGV   75 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG------GEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC------cCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCcccccccccc
Confidence            5789999999999999999988742      1111111000                            00    00011


Q ss_pred             hHHh------HHHHH-----HHhCCCCeEEeccc---cccCHHHHHHHHHhhhhc
Q 036633          288 HFFD------SLAAL-----VKKRPYSVVLFDKI---EKANSSILNLLLKILKTD  328 (550)
Q Consensus       288 ~liG------~lt~a-----l~~~p~~VlllDEI---eka~~~v~~~Ll~~ld~g  328 (550)
                      .+-|      .+..+     +...| .+++|||+   ...++..+..+.++++++
T Consensus        76 ~lSgG~~qr~~la~aa~~~~l~~~p-~llilDEigp~~~ld~~~~~~l~~~l~~~  129 (178)
T 1ye8_A           76 NVQYFEELAIPILERAYREAKKDRR-KVIIIDEIGKMELFSKKFRDLVRQIMHDP  129 (178)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCTT-CEEEECCCSTTGGGCHHHHHHHHHHHTCT
T ss_pred             CcCHHHHHHHHHHhhccccccccCC-CEEEEeCCCCcccCCHHHHHHHHHHHhcC
Confidence            1222      44553     56666 79999995   456788999999998765

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.99  E-value=1.6e-05  Score=80.55  Aligned_cols=71  Identities=18%  Similarity=0.364  Sum_probs=44.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch--hhhhhHHhHHHHHHHhCCCCeEEeccccccCH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL--ESIKHFFDSLAALVKKRPYSVVLFDKIEKANS  315 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~--~~~s~liG~lt~al~~~p~~VlllDEIeka~~  315 (550)
                      ..++|+||||+|||++|..++.. .+   ..-.|+.+..++....  ......+..+.+.+.+.+  +|+||++..+.+
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~-~G---~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~  196 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA-LG---GKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG  196 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH-HH---TTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh-CC---CCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence            56799999999999999999987 33   2224555522221110  112222334555666655  999999987744

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.99  E-value=5.9e-05  Score=79.86  Aligned_cols=84  Identities=10%  Similarity=0.155  Sum_probs=54.3

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----hhhHHh-----------------HHH
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----IKHFFD-----------------SLA  294 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----~s~liG-----------------~lt  294 (550)
                      +|.+++|+||+|+|||+++..||..+..   ......-+++..|.....     .....|                 ...
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~---~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al  175 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQK---RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGV  175 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH
Confidence            4689999999999999999999998876   445666677666543210     000011                 122


Q ss_pred             HHHHhCCCCeEEeccccccC--HHHHHHHHH
Q 036633          295 ALVKKRPYSVVLFDKIEKAN--SSILNLLLK  323 (550)
Q Consensus       295 ~al~~~p~~VlllDEIeka~--~~v~~~Ll~  323 (550)
                      +..+...+.+|++|.....+  ......+..
T Consensus       176 ~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~  206 (443)
T 3dm5_A          176 DYFKSKGVDIIIVDTAGRHKEDKALIEEMKQ  206 (443)
T ss_dssp             HHHHHTTCSEEEEECCCCSSCCHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEECCCcccchHHHHHHHHH
Confidence            23344567999999998776  334444433

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.97  E-value=6.1e-06  Score=77.25  Aligned_cols=85  Identities=16%  Similarity=0.254  Sum_probs=48.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC---CCCchhhhhhHHh------------HHHHHHHhCCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG---NYTELESIKHFFD------------SLAALVKKRPYS  303 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s---~~~~~~~~s~liG------------~lt~al~~~p~~  303 (550)
                      ...+++||+|+|||+++..++..+..   ...+.+.+...   .+......++ .|            .+.+.+. .++.
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~~---~g~~v~~~~~~~d~r~~~~~i~s~-~g~~~~~~~~~~~~~~~~~~~-~~~d   78 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYKL---GKKKVAVFKPKIDSRYHSTMIVSH-SGNGVEAHVIERPEEMRKYIE-EDTR   78 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHH---TTCEEEEEEEC-----CCCEECC-----CEECEEESSGGGGGGGCC-TTEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeeccccccCcccEEec-CCCceeeEEECCHHHHHHHhc-CCCC
Confidence            37889999999999998665554433   11222222111   0100000000 11            1111111 2467


Q ss_pred             eEEeccccccCHHHHHHHHHhhhhc
Q 036633          304 VVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       304 VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      +|+|||+..+++++++.|..+.+.|
T Consensus        79 vviIDE~Q~~~~~~~~~l~~l~~~~  103 (184)
T 2orw_A           79 GVFIDEVQFFNPSLFEVVKDLLDRG  103 (184)
T ss_dssp             EEEECCGGGSCTTHHHHHHHHHHTT
T ss_pred             EEEEECcccCCHHHHHHHHHHHHCC
Confidence            9999999999999999888888877

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.97  E-value=4.4e-05  Score=73.55  Aligned_cols=138  Identities=18%  Similarity=0.152  Sum_probs=80.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHH-------------------hHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFF-------------------DSLAALVKK  299 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~li-------------------G~lt~al~~  299 (550)
                      ..++|.|++|||||++|-.+|..+..   .....+.+++..-........+-                   +.+..++..
T Consensus         7 l~I~~~~kgGvGKTt~a~~la~~l~~---~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~   83 (228)
T 2r8r_A            7 LKVFLGAAPGVGKTYAMLQAAHAQLR---QGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA   83 (228)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHH---CCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc
Confidence            68999999999999999999988866   33455556654321111111111                   134444555


Q ss_pred             CCCCeEEeccccccCH------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCC-hHHHHHhhhhhhHhhHHH
Q 036633          300 RPYSVVLFDKIEKANS------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLK-DEQVYEVMLTATYGRVNE  372 (550)
Q Consensus       300 ~p~~VlllDEIeka~~------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g-~~~~~~~~~~~~~~~~~~  372 (550)
                      +| .++++||+...+.      ..+..+...++.|  .           .   ++.|+|.. .+.+++...    ....-
T Consensus        84 ~p-dlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg--i-----------d---VitT~Nlqh~esl~d~v~----~itg~  142 (228)
T 2r8r_A           84 AP-SLVLVDELAHTNAPGSRHTKRWQDIQELLAAG--I-----------D---VYTTVNVQHLESLNDQVR----GITGV  142 (228)
T ss_dssp             CC-SEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT--C-----------E---EEEEEEGGGBGGGHHHHH----HHHSC
T ss_pred             CC-CEEEEeCCCCCCcccchhHHHHHHHHHHHcCC--C-----------C---EEEEccccccccHHHHHH----HHcCC
Confidence            55 8999999986531      2344444466666  2           1   67888864 222222110    00011


Q ss_pred             HhccCCChhhhhhccceeEecCCCCCCHHHHH
Q 036633          373 VTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRL  404 (550)
Q Consensus       373 ~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~  404 (550)
                      .++...+..++.+.|+++..+    ++++++.
T Consensus       143 ~v~e~vpd~~~~~a~~v~lvD----~~p~~l~  170 (228)
T 2r8r_A          143 QVRETLPDWVLQEAFDLVLID----LPPRELL  170 (228)
T ss_dssp             CCCSCBCHHHHHTCSEEEEBC----CCHHHHH
T ss_pred             CcCCcCccHHHhhCCeEEEec----CCHHHHH
Confidence            234566778889997765554    7787754

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.86  E-value=3e-05  Score=82.89  Aligned_cols=103  Identities=17%  Similarity=0.320  Sum_probs=67.1

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCC-ceeEEecCCCCchhhhhh
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDN-HLIHFDMGNYTELESIKH  288 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~-~li~id~s~~~~~~~~s~  288 (550)
                      +|.+|+..+...+...           . +++++.||+|||||+++..++..+..   ... .++.+..+.- .......
T Consensus        29 ~Q~~av~~~~~~i~~~-----------~-~~~li~G~aGTGKT~ll~~~~~~l~~---~~~~~il~~a~T~~-Aa~~l~~   92 (459)
T 3upu_A           29 GQKNAFNIVMKAIKEK-----------K-HHVTINGPAGTGATTLTKFIIEALIS---TGETGIILAAPTHA-AKKILSK   92 (459)
T ss_dssp             HHHHHHHHHHHHHHSS-----------S-CEEEEECCTTSCHHHHHHHHHHHHHH---TTCCCEEEEESSHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-----------C-CEEEEEeCCCCCHHHHHHHHHHHHHh---cCCceEEEecCcHH-HHHHHHh
Confidence            6888888888877654           1 48999999999999999999999876   222 2333221110 0000011


Q ss_pred             HHh----HHHHHHH-------------------hCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          289 FFD----SLAALVK-------------------KRPYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       289 liG----~lt~al~-------------------~~p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .+|    .+-..+.                   ...+.+|++||+..+++..+..|++.+..+
T Consensus        93 ~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~  155 (459)
T 3upu_A           93 LSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPW  155 (459)
T ss_dssp             HHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTT
T ss_pred             hhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhccCC
Confidence            111    1111111                   124679999999999999999999988744

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.70  E-value=5.9e-05  Score=77.93  Aligned_cols=84  Identities=23%  Similarity=0.421  Sum_probs=57.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEE-ecCCCCchhh------------hhhHHhHHHHHHHhCCCCe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHF-DMGNYTELES------------IKHFFDSLAALVKKRPYSV  304 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~i-d~s~~~~~~~------------~s~liG~lt~al~~~p~~V  304 (550)
                      +.++++||+|+|||++.++++..+..   . ...++.+ |-.+|...+.            ...+...+..+++..| .+
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~---~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~P-dv  199 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNN---TKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDP-DI  199 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHH---HCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCC-SE
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccC---CCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCc-CE
Confidence            79999999999999999999988864   2 2233322 1112211100            0011115677778888 79


Q ss_pred             EEeccccccCHHHHHHHHHhhhhc
Q 036633          305 VLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       305 lllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      |++||+-  +++....+++....|
T Consensus       200 illDEp~--d~e~~~~~~~~~~~G  221 (356)
T 3jvv_A          200 ILVGEMR--DLETIRLALTAAETG  221 (356)
T ss_dssp             EEESCCC--SHHHHHHHHHHHHTT
T ss_pred             EecCCCC--CHHHHHHHHHHHhcC
Confidence            9999997  688888888888888

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.69  E-value=0.00015  Score=71.70  Aligned_cols=84  Identities=24%  Similarity=0.442  Sum_probs=53.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecC-CCCchh------------hhhhHHhHHHHHHHhCCCCe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMG-NYTELE------------SIKHFFDSLAALVKKRPYSV  304 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s-~~~~~~------------~~s~liG~lt~al~~~p~~V  304 (550)
                      ..++++||+|+|||++.++|+..+..   . ...++...-. +|....            ....+-..+..+++..| .+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g~~~~---~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p-~i  101 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMIDYINQ---TKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDP-DV  101 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHHHHHH---HCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCC-SE
T ss_pred             CEEEEECCCCccHHHHHHHHHHhCCC---CCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCC-CE
Confidence            78999999999999999999998754   2 2233222110 111000            00122236777888888 79


Q ss_pred             EEeccccccCHHHHHHHHHhhhhc
Q 036633          305 VLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       305 lllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      +++||+-  ++.....+++....|
T Consensus       102 lllDEp~--D~~~~~~~l~~~~~g  123 (261)
T 2eyu_A          102 IFVGEMR--DLETVETALRAAETG  123 (261)
T ss_dssp             EEESCCC--SHHHHHHHHHHHHTT
T ss_pred             EEeCCCC--CHHHHHHHHHHHccC
Confidence            9999997  666555556655555

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.67  E-value=8e-05  Score=71.81  Aligned_cols=87  Identities=14%  Similarity=0.131  Sum_probs=54.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCc-hhhhhhHHh------------HHHHHHHh----CC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTE-LESIKHFFD------------SLAALVKK----RP  301 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~-~~~~s~liG------------~lt~al~~----~p  301 (550)
                      ...+++||+|+|||+++..++..+..   .....+.+....-.. ...+..-+|            .+.+.++.    .+
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~   89 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDE   89 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCC
Confidence            68889999999999999888877755   222343332111000 000111112            34444544    35


Q ss_pred             CCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          302 YSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       302 ~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      +.+|++||+.-+++++...+..+.+.|
T Consensus        90 ~dvViIDEaQ~l~~~~ve~l~~L~~~g  116 (223)
T 2b8t_A           90 TKVIGIDEVQFFDDRICEVANILAENG  116 (223)
T ss_dssp             CCEEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred             CCEEEEecCccCcHHHHHHHHHHHhCC
Confidence            689999999999988877776666555

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.65  E-value=0.00025  Score=75.04  Aligned_cols=75  Identities=12%  Similarity=0.087  Sum_probs=49.7

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----hhhHHh--------------HHHHHH
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----IKHFFD--------------SLAALV  297 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----~s~liG--------------~lt~al  297 (550)
                      +|.+++|+||+|+|||+++..||..+..   ......-+++..|.....     .....|              .+..++
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~---~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al  172 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK---RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGV  172 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHH
Confidence            4589999999999999999999998876   445666666665543210     011111              122333


Q ss_pred             Hh---CCCCeEEeccccccC
Q 036633          298 KK---RPYSVVLFDKIEKAN  314 (550)
Q Consensus       298 ~~---~p~~VlllDEIeka~  314 (550)
                      ..   ..+.+|++|.....+
T Consensus       173 ~~a~~~~~DvvIIDTaGr~~  192 (433)
T 3kl4_A          173 DIFVKNKMDIIIVDTAGRHG  192 (433)
T ss_dssp             HHTTTTTCSEEEEEECCCSS
T ss_pred             HHHHhcCCCEEEEECCCCcc
Confidence            33   357899999998755

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.62  E-value=7.6e-05  Score=70.69  Aligned_cols=122  Identities=16%  Similarity=0.138  Sum_probs=67.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc--cCCCCC-CceeEEecCCCCchhh-----hh---hHH------hHHHHHH--Hh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY--DNNDND-NHLIHFDMGNYTELES-----IK---HFF------DSLAALV--KK  299 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~--~~~~~~-~~li~id~s~~~~~~~-----~s---~li------G~lt~al--~~  299 (550)
                      ...+++|+||+|||++|..++....  ...... .++...++.++...+.     ..   ..+      ..+.+..  ..
T Consensus         6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~   85 (199)
T 2r2a_A            6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE   85 (199)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence            5789999999999999988755432  100012 4665666655432221     00   000      1112211  22


Q ss_pred             CCCCeEEeccccccCH---HHH--HHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHh
Q 036633          300 RPYSVVLFDKIEKANS---SIL--NLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVT  374 (550)
Q Consensus       300 ~p~~VlllDEIeka~~---~v~--~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l  374 (550)
                      ..++||+|||++.+-+   +..  ..++..++..  + -         +..-||++++..                    
T Consensus        86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~--r-~---------~~~~iil~tq~~--------------------  133 (199)
T 2r2a_A           86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTH--R-H---------QGIDIFVLTQGP--------------------  133 (199)
T ss_dssp             GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGT--T-T---------TTCEEEEEESCG--------------------
T ss_pred             cCceEEEEEChhhhccCccccchhHHHHHHHHhc--C-c---------CCeEEEEECCCH--------------------
Confidence            3368999999998721   111  1244555544  3 0         112245555541                    


Q ss_pred             ccCCChhhhhhccceeEec
Q 036633          375 GSLFKPSLLKLLDKLVVID  393 (550)
Q Consensus       375 ~~~f~p~ll~Rid~ii~f~  393 (550)
                       ..+...+..|++..+.|.
T Consensus       134 -~~l~~~lr~ri~~~~~l~  151 (199)
T 2r2a_A          134 -KLLDQNLRTLVRKHYHIA  151 (199)
T ss_dssp             -GGBCHHHHTTEEEEEEEE
T ss_pred             -HHHhHHHHHHhheEEEEc
Confidence             356667999998888888

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.52  E-value=0.0011  Score=72.75  Aligned_cols=47  Identities=19%  Similarity=0.239  Sum_probs=38.4

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHH
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      ...+||.+..++.+...+...         ...+..+.++||+|+|||++|..++.
T Consensus       123 ~~~~vGR~~~l~~L~~~L~~~---------~~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          123 PVVFVTRKKLVNAIQQKLSKL---------KGEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             CSSCCCCHHHHHHHHHHHTTS---------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCeecccHHHHHHHHHHHhcc---------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence            356999999999998888753         11336899999999999999999864

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.50  E-value=0.00093  Score=72.92  Aligned_cols=44  Identities=16%  Similarity=0.206  Sum_probs=36.2

Q ss_pred             cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHH
Q 036633          209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      +|.+..++.|...+...   .     ...+.++.++|+.|+|||+||+.+++
T Consensus       131 ~GR~~~~~~l~~~L~~~---~-----~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEM---C-----DLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHHHHH---T-----TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcc---c-----CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            59999999999988643   1     11337899999999999999999996

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.47  E-value=0.00018  Score=74.81  Aligned_cols=84  Identities=24%  Similarity=0.442  Sum_probs=53.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecC-CCCchh------------hhhhHHhHHHHHHHhCCCCe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMG-NYTELE------------SIKHFFDSLAALVKKRPYSV  304 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s-~~~~~~------------~~s~liG~lt~al~~~p~~V  304 (550)
                      ..++++||+|+|||++.++|+..+..   . ...++.++-. ++.-..            ....+-+.+..+++..| .+
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~~~~---~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~p-d~  212 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDYINQ---TKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDP-DV  212 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHH---HSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCC-SE
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCc---CCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCc-CE
Confidence            78999999999999999999998764   2 2344333311 110000            01122236677777777 79


Q ss_pred             EEeccccccCHHHHHHHHHhhhhc
Q 036633          305 VLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       305 lllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      |++||+-  +++....+++....|
T Consensus       213 illdE~~--d~e~~~~~l~~~~~g  234 (372)
T 2ewv_A          213 IFVGEMR--DLETVETALRAAETG  234 (372)
T ss_dssp             EEESCCC--SHHHHHHHHHHHTTT
T ss_pred             EEECCCC--CHHHHHHHHHHHhcC
Confidence            9999997  565555556666555

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.45  E-value=0.0013  Score=67.14  Aligned_cols=39  Identities=23%  Similarity=0.239  Sum_probs=29.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      +|.++.|+||+|+|||++++.||..+..   ....+.-.++.
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~---~~g~V~l~g~D  166 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWLKN---HGFSVVIAASD  166 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh---cCCEEEEEeec
Confidence            4489999999999999999999998865   44444444433

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.39  E-value=0.00021  Score=67.22  Aligned_cols=85  Identities=16%  Similarity=0.285  Sum_probs=51.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe--c-CCCCchhhhhhHHh------------HHHHHHHhCCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD--M-GNYTELESIKHFFD------------SLAALVKKRPYS  303 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id--~-s~~~~~~~~s~liG------------~lt~al~~~p~~  303 (550)
                      ...+++||+|+|||+.+-.++..+..   ......-+.  . ..|.+....+++ |            .+.+.+. .++.
T Consensus         9 ~i~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~~d~r~~~~~i~s~~-g~~~~a~~~~~~~~i~~~~~-~~~d   83 (191)
T 1xx6_A            9 WVEVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPEIDNRYSKEDVVSHM-GEKEQAVAIKNSREILKYFE-EDTE   83 (191)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC-------CEEECTT-SCEEECEEESSSTHHHHHCC-TTCS
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEeccCccchHHHHHhhc-CCceeeEeeCCHHHHHHHHh-ccCC
Confidence            58899999999999888777766644   222333332  1 112211111221 2            2222222 2578


Q ss_pred             eEEeccccccCHHHHHHHHHhhhhc
Q 036633          304 VVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       304 VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      +|++||+.-++++....+..+.+.|
T Consensus        84 vViIDEaqfl~~~~v~~l~~l~~~~  108 (191)
T 1xx6_A           84 VIAIDEVQFFDDEIVEIVNKIAESG  108 (191)
T ss_dssp             EEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            9999999999988888777666665

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.37  E-value=0.0033  Score=63.41  Aligned_cols=42  Identities=14%  Similarity=0.238  Sum_probs=32.5

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      .|.+++|+||+|+|||+++..||..+..   ....+.-+++..+.
T Consensus       103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~---~g~kV~lv~~D~~r  144 (306)
T 1vma_A          103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD---EGKSVVLAAADTFR  144 (306)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEECTTC
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHHHHHh---cCCEEEEEcccccc
Confidence            3478999999999999999999998865   44456666665443

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.34  E-value=0.00081  Score=63.79  Aligned_cols=25  Identities=12%  Similarity=0.115  Sum_probs=22.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++||||+|||++++.++..+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5889999999999999999996654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.32  E-value=0.00071  Score=66.13  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=32.3

Q ss_pred             CcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          234 SRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       234 ~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ...+|..++|+||||+|||++|+.|++.+..      +.+.+|...+
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~------~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG------NIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT------CCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcCC------CcEEEecHHH
Confidence            3345588999999999999999999998754      4566665554

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.27  E-value=0.0049  Score=65.17  Aligned_cols=84  Identities=14%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecCCCCchhhh-----hhHHh-----------------HH
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMGNYTELESI-----KHFFD-----------------SL  293 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s~~~~~~~~-----s~liG-----------------~l  293 (550)
                      .|.+++|+|++|+|||+++-.||..+..   . .....-+|+..+......     ..-.|                 ..
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~---~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~  175 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE---KHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAA  175 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHH---TSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH---hcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHH
Confidence            4588999999999999999999998876   4 557777888766532110     00001                 12


Q ss_pred             HHHHHhCCCCeEEeccccccCH--HHHHHHHH
Q 036633          294 AALVKKRPYSVVLFDKIEKANS--SILNLLLK  323 (550)
Q Consensus       294 t~al~~~p~~VlllDEIeka~~--~v~~~Ll~  323 (550)
                      ...++...|.+|++|=....+.  ...+.|..
T Consensus       176 l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~  207 (433)
T 2xxa_A          176 LKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQ  207 (433)
T ss_dssp             HHHHHHTTCSEEEEECCCCCTTCHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEECCCcccccHHHHHHHHH
Confidence            2233445788999998766553  44444433

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.26  E-value=0.00021  Score=65.43  Aligned_cols=34  Identities=15%  Similarity=0.440  Sum_probs=28.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      ..++++||||+|||++|+.|++.+..      +++.++..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~~------~~~~~~~D   37 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLPE------PWLAFGVD   37 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSS------CEEEEEHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCC------CeEEeccc
Confidence            47899999999999999999999865      67776643

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.26  E-value=0.00074  Score=81.96  Aligned_cols=74  Identities=16%  Similarity=0.227  Sum_probs=50.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-------hhhHHh-----------HHHHHHHhC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-------IKHFFD-----------SLAALVKKR  300 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-------~s~liG-----------~lt~al~~~  300 (550)
                      .+++++||||||||.+|++++.....   ...+-+.++..+..+...       .++|++           .+....++.
T Consensus      1083 ~~~l~~G~~g~GKT~la~~~~~~~~~---~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~ 1159 (1706)
T 3cmw_A         1083 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1159 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCChHHHHHHHHHHhhh---cCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhc
Confidence            67999999999999999999987765   455777777766442222       122222           222234566


Q ss_pred             CCCeEEeccccccCH
Q 036633          301 PYSVVLFDKIEKANS  315 (550)
Q Consensus       301 p~~VlllDEIeka~~  315 (550)
                      ..++|++|+++.+-|
T Consensus      1160 ~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A         1160 AVDVIVVDSVAALTP 1174 (1706)
T ss_dssp             CCSEEEESCGGGCCC
T ss_pred             CCeEEEeCchHhcCc
Confidence            679999999875433

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.24  E-value=0.0007  Score=83.16  Aligned_cols=71  Identities=15%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-------------------HHHHHHH
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-------------------SLAALVK  298 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-------------------~lt~al~  298 (550)
                      +.+++|+||||||||+||.+++.....   .......+++.+...... .+-.|                   .+...++
T Consensus      1427 g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A         1427 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCHHH-HHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence            379999999999999999999887655   344566677665433222 11112                   2223445


Q ss_pred             hCCCCeEEeccccc
Q 036633          299 KRPYSVVLFDKIEK  312 (550)
Q Consensus       299 ~~p~~VlllDEIek  312 (550)
                      +...++|+||++.-
T Consensus      1503 ~~~~~lVVIDsi~a 1516 (2050)
T 3cmu_A         1503 SGAVDVIVVDSVAA 1516 (2050)
T ss_dssp             HTCCSEEEESCGGG
T ss_pred             cCCCCEEEEcChhH
Confidence            55668999999963

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.23  E-value=0.0022  Score=67.66  Aligned_cols=42  Identities=17%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      .|.+++|+||+|+|||+++..||..+..   ....+.-+++.-+.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~---~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQR  138 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEECCSSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEeeccccC
Confidence            4478889999999999999999999876   45566667765443

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.21  E-value=0.0016  Score=61.20  Aligned_cols=103  Identities=12%  Similarity=0.135  Sum_probs=60.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec----CCCCchhhhhhH-------------------------
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM----GNYTELESIKHF-------------------------  289 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~----s~~~~~~~~s~l-------------------------  289 (550)
                      +.+++++++|+|||++|-.+|-..-+.   ..+...+.+    ..+.+...+..|                         
T Consensus        29 g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a  105 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC  105 (196)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence            789999999999999999988777663   223333311    111122222222                         


Q ss_pred             Hh---HHHHHHHhCCCCeEEeccccc------cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          290 FD---SLAALVKKRPYSVVLFDKIEK------ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       290 iG---~lt~al~~~p~~VlllDEIek------a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      ..   ...+.+....|.+|+|||+--      ++.+   .+++++.+.  .           .+.-+|+|+|.....+.+
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~R--p-----------~~~~vIlTGr~ap~~l~e  169 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLE---EVISALNAR--P-----------GHQTVIITGRGCHRDILD  169 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHTS--C-----------TTCEEEEECSSCCHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHhC--c-----------CCCEEEEECCCCcHHHHH
Confidence            01   223333446689999999943      3433   345555544  2           344589999976554443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.19  E-value=0.0026  Score=64.56  Aligned_cols=40  Identities=20%  Similarity=0.343  Sum_probs=32.9

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      |.+++|+||+|+|||+++..||..+..   ....+.-+|+.-+
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~---~g~kVllid~D~~  144 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAE---LGYKVLIAAADTF  144 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCc
Confidence            489999999999999999999998876   4556777776654

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.17  E-value=0.00051  Score=68.71  Aligned_cols=38  Identities=32%  Similarity=0.366  Sum_probs=30.2

Q ss_pred             cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          235 RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      ..+|..++|+||||+|||++|+.|++.+..      ..+.+++.
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~------~~~~Is~D   67 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQG------NVIVIDND   67 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTT------CCEEECTH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCC------CeEEEech
Confidence            345678999999999999999999998744      45666653

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.16  E-value=0.00068  Score=68.90  Aligned_cols=96  Identities=10%  Similarity=0.098  Sum_probs=60.6

Q ss_pred             HHHhhhhcCCCccCHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC
Q 036633          157 ARVHGKFKEKLAVDVEEIAEVASKLTGIPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR  236 (550)
Q Consensus       157 ~~~~~~~~~~~~v~~~~i~~v~~~~~gip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~  236 (550)
                      +++..+.+....++.++|.+++.     |+.+        +.+       -++|...+...+...+...       ....
T Consensus        38 ~~~~~~~~~~~~~~~~~v~~~y~-----pl~r--------ll~-------~~~~~~~~l~~~~~~~l~~-------~~~~   90 (321)
T 3tqc_A           38 SDLDKLQGQIEIVSLKEVTEIYL-----PLSR--------LLS-------FYVTARQTLQQATYQFLGK-------PEPK   90 (321)
T ss_dssp             HHHHHTTTTHHHHCHHHHHHTHH-----HHHH--------HHH-------HHHHHHHHHHHHHHHHHTC-------CCCC
T ss_pred             HHHHHhhCCCCCcCHHHHHHHHH-----HHHH--------HHH-------HhhcchHHHHHHHHHHhcc-------CCCC
Confidence            44555555566677777777766     3222        111       2356667777666666654       2344


Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +|..+.+.||+|+|||++++.|+..+.... .......+.+..|
T Consensus        91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~-~~~~v~~i~~D~f  133 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWP-DHPNVEVITTDGF  133 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTST-TCCCEEEEEGGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccC-CCCeEEEEeeccc
Confidence            568899999999999999999999875200 1223444555544

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.16  E-value=0.00061  Score=61.43  Aligned_cols=76  Identities=18%  Similarity=0.234  Sum_probs=45.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh------------h-hH---Hh------HHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI------------K-HF---FD------SLAALV  297 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~------------s-~l---iG------~lt~al  297 (550)
                      .++|+||||+|||++|+.| +.+..        ..++++++......            . .+   .|      ...+.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   73 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERGA--------KVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEEL   73 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTTC--------EEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCCC--------cEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence            6889999999999999999 65533        34554433221110            0 00   11      223333


Q ss_pred             HhCCCCeEEeccccccCHHHHHHHHHhhh
Q 036633          298 KKRPYSVVLFDKIEKANSSILNLLLKILK  326 (550)
Q Consensus       298 ~~~p~~VlllDEIeka~~~v~~~Ll~~ld  326 (550)
                      ...+..++++|-+  .++.....|.+.+.
T Consensus        74 ~~~~~~~vi~dg~--~~~~~~~~l~~~~~  100 (179)
T 3lw7_A           74 GTSNHDLVVFDGV--RSLAEVEEFKRLLG  100 (179)
T ss_dssp             CSCCCSCEEEECC--CCHHHHHHHHHHHC
T ss_pred             HhcCCCeEEEeCC--CCHHHHHHHHHHhC
Confidence            3355678899987  67777777766654

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.15  E-value=0.0018  Score=66.64  Aligned_cols=73  Identities=15%  Similarity=0.145  Sum_probs=48.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-------------------HHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-------------------SLAALVKK  299 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-------------------~lt~al~~  299 (550)
                      ..++++||||+|||++|..++..+..   ...+.+.++..+-.... ...-+|                   .+...++.
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~~-ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~  137 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDPV-YAKNLGVDLKSLLISQPDHGEQALEIVDELVRS  137 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccchH-HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence            68899999999999999999988755   44467777765533221 111122                   22223344


Q ss_pred             CCCCeEEeccccccCH
Q 036633          300 RPYSVVLFDKIEKANS  315 (550)
Q Consensus       300 ~p~~VlllDEIeka~~  315 (550)
                      ....+|++|.+..+.+
T Consensus       138 ~~~dlvVIDSi~~l~~  153 (356)
T 3hr8_A          138 GVVDLIVVDSVAALVP  153 (356)
T ss_dssp             SCCSEEEEECTTTCCC
T ss_pred             cCCCeEEehHhhhhcC
Confidence            5568999999877654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.15  E-value=0.0061  Score=72.21  Aligned_cols=64  Identities=16%  Similarity=0.117  Sum_probs=46.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHh---ccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANEL---YDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l---~~~~~~~~~li~id~s~~  280 (550)
                      ..++|.+..++.|...+...         ...+..+.++|+.|+|||+||+.++...   ..  .-....+.++++..
T Consensus       124 ~~~vgR~~~~~~l~~~l~~~---------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~--~~~~~~~~v~~~~~  190 (1249)
T 3sfz_A          124 VIFVTRKKLVHAIQQKLWKL---------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEG--CFSGGVHWVSIGKQ  190 (1249)
T ss_dssp             SSCCCCHHHHHHHHHHHHTT---------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTT--TSTTCEEEEECCSC
T ss_pred             ceeccHHHHHHHHHHHHhhc---------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHh--hCCCeEEEEEECCc
Confidence            56999999999999988644         1234788999999999999999887642   11  01124456777664

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.11  E-value=0.0017  Score=65.15  Aligned_cols=41  Identities=15%  Similarity=0.111  Sum_probs=32.6

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      |.+++++||+|+|||+++..||..+..   ......-+|+..+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~---~g~~v~l~~~D~~r  138 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKK---KGFKVGLVGADVYR  138 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHH---TTCCEEEEECCCSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEecCCCC
Confidence            578889999999999999999988865   44466667766543

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.10  E-value=0.00044  Score=75.99  Aligned_cols=86  Identities=15%  Similarity=0.222  Sum_probs=53.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh----HHHHHH------------HhCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD----SLAALV------------KKRPY  302 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG----~lt~al------------~~~p~  302 (550)
                      ..+++.||||||||+++..++..+..   ...+++-.-.+ -.........+|    .+-..+            ...++
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~~~l~~---~g~~Vl~~ApT-~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~  280 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVADLAES---LGLEVGLCAPT-GKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPY  280 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESS-HHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEecCc-HHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccC
Confidence            48999999999999999999988765   33333322111 000000111111    111111            11246


Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhc
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .+|++||+..++...+..|++.+..|
T Consensus       281 dvlIIDEasml~~~~~~~Ll~~~~~~  306 (574)
T 3e1s_A          281 DLLIVDEVSMMGDALMLSLLAAVPPG  306 (574)
T ss_dssp             SEEEECCGGGCCHHHHHHHHTTSCTT
T ss_pred             CEEEEcCccCCCHHHHHHHHHhCcCC
Confidence            89999999999999999998887655

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.09  E-value=0.00031  Score=65.82  Aligned_cols=33  Identities=30%  Similarity=0.299  Sum_probs=26.3

Q ss_pred             CCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          232 LSSRRQLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       232 l~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ...+.+|..++|.||||+|||++|+.|++.+..
T Consensus        14 ~~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~   46 (201)
T 2cdn_A           14 LVPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGI   46 (201)
T ss_dssp             --CCCSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            334445578999999999999999999998744

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.08  E-value=0.0028  Score=60.03  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.++||||+|||++++.|+..+
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            688999999999999999999754

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.07  E-value=0.0005  Score=65.61  Aligned_cols=89  Identities=18%  Similarity=0.229  Sum_probs=50.6

Q ss_pred             CCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC---CCCchhhhhhHHh---------HHHHHHH--hC
Q 036633          236 RQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG---NYTELESIKHFFD---------SLAALVK--KR  300 (550)
Q Consensus       236 ~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s---~~~~~~~~s~liG---------~lt~al~--~~  300 (550)
                      ..+ ...+++||.|+|||+.+-.++..+..   .....+-+...   .|.+....+++ |         ...+...  ..
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~---~g~kVli~k~~~d~R~ge~~i~s~~-g~~~~a~~~~~~~~~~~~~~~  100 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRTQF---AKQHAIVFKPCIDNRYSEEDVVSHN-GLKVKAVPVSASKDIFKHITE  100 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEECC------------------CCEEECSSGGGGGGGCCS
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEeccCCcchHHHHHhhc-CCeeEEeecCCHHHHHHHHhc
Confidence            345 56679999999999888777766654   33344444321   12222222222 3         1111111  12


Q ss_pred             CCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          301 PYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       301 p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      ++.+|++||+.-++++..+.+..+.+.|
T Consensus       101 ~~dvViIDEaQF~~~~~V~~l~~l~~~~  128 (214)
T 2j9r_A          101 EMDVIAIDEVQFFDGDIVEVVQVLANRG  128 (214)
T ss_dssp             SCCEEEECCGGGSCTTHHHHHHHHHHTT
T ss_pred             CCCEEEEECcccCCHHHHHHHHHHhhCC
Confidence            5789999999999988887776666666

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.00  E-value=0.00036  Score=64.30  Aligned_cols=26  Identities=15%  Similarity=0.151  Sum_probs=23.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++|+||||+|||++|+.||+.+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l~~   31 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLTKR   31 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            57899999999999999999999855

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=96.97  E-value=0.0019  Score=62.51  Aligned_cols=24  Identities=38%  Similarity=0.279  Sum_probs=21.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .++++||+|+|||.+|..++..+.
T Consensus       110 ~~ll~~~tG~GKT~~a~~~~~~~~  133 (237)
T 2fz4_A          110 RGCIVLPTGSGKTHVAMAAINELS  133 (237)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcC
Confidence            589999999999999998887763

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.95  E-value=0.0024  Score=58.61  Aligned_cols=27  Identities=19%  Similarity=0.251  Sum_probs=23.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .|..++|.|+||+|||++|+.|++.+.
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346889999999999999999999874

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.94  E-value=0.0026  Score=64.13  Aligned_cols=25  Identities=16%  Similarity=0.305  Sum_probs=22.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|+++|+..+.
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCC
Confidence            6889999999999999999998764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.94  E-value=0.0024  Score=64.30  Aligned_cols=28  Identities=29%  Similarity=0.341  Sum_probs=24.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .|..++++||||+|||++|..||+.+..
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~~   36 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILPV   36 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCCC
Confidence            4568899999999999999999999865

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.92  E-value=0.0016  Score=61.15  Aligned_cols=57  Identities=21%  Similarity=0.278  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          213 DAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       213 ~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..++.++..+...        .+.++..+.++||+|+|||++++.|+..+..   ...+++.+++..+
T Consensus         5 ~~~~~l~~~~~~~--------~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~---~~~~v~~~~~d~~   61 (201)
T 1rz3_A            5 DRIDFLCKTILAI--------KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE---QGISVCVFHMDDH   61 (201)
T ss_dssp             HHHHHHHHHHHTS--------CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEEGGGG
T ss_pred             HHHHHHHHHHHHh--------ccCCCeEEEEECCCCCCHHHHHHHHHHHHhh---cCCeEEEeccCcc
Confidence            3455666666543        1234478999999999999999999998754   2335666655444

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.92  E-value=0.00059  Score=61.71  Aligned_cols=25  Identities=32%  Similarity=0.635  Sum_probs=22.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++|.||||+|||++|+.|++.+.-
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~   27 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKY   27 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5789999999999999999998844

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.91  E-value=0.0091  Score=62.74  Aligned_cols=146  Identities=13%  Similarity=0.075  Sum_probs=75.0

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCH
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANS  315 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~  315 (550)
                      .+|..++++||||+|||++|+.|++.+        .+..++...+..   ...+...+...+.. . ..+++|-... ..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~--------~~~~i~~D~~~~---~~~~~~~~~~~l~~-g-~~vIiD~~~~-~~  321 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA--------GYVHVNRDTLGS---WQRCVSSCQAALRQ-G-KRVVIDNTNP-DV  321 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG--------TCEECCGGGSCS---HHHHHHHHHHHHHT-T-CCEEEESCCC-SH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc--------CcEEEccchHHH---HHHHHHHHHHHHhc-C-CcEEEeCCCC-CH
Confidence            345788999999999999999999876        345566555531   22222233334443 3 2456776542 34


Q ss_pred             HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhh---------hhHhhHHHHhccCC-Chhhhhh
Q 036633          316 SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLT---------ATYGRVNEVTGSLF-KPSLLKL  385 (550)
Q Consensus       316 ~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~---------~~~~~~~~~l~~~f-~p~ll~R  385 (550)
                      .....+.+++...  - .         .-.+|.+.+  ..+.+......         .....+...+...| .|..-..
T Consensus       322 ~~r~~~~~~~~~~--~-~---------~~~~v~l~~--~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~~E~  387 (416)
T 3zvl_A          322 PSRARYIQCAKDA--G-V---------PCRCFNFCA--TIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEG  387 (416)
T ss_dssp             HHHHHHHHHHHHH--T-C---------CEEEEEECC--CHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGGT
T ss_pred             HHHHHHHHHHHHc--C-C---------eEEEEEEeC--CHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCcccC
Confidence            4445555555432  1 1         112344433  33333322110         01122333333344 5555667


Q ss_pred             ccceeEecCCCC-CCHHHHHHHHHH
Q 036633          386 LDKLVVIDLAVP-LLDTTRLLLREW  409 (550)
Q Consensus       386 id~ii~f~~~~p-L~~e~i~~I~~~  409 (550)
                      +|.++..+..+. +..++-..+...
T Consensus       388 fd~v~~v~~~~~~f~~~~~~~l~~~  412 (416)
T 3zvl_A          388 FLEILEIPFRLQEHLDPALQRLYRQ  412 (416)
T ss_dssp             CSEEEEECCCCCTTCCHHHHHHHTS
T ss_pred             CcEEEEEecccccccCHHHHHHHHH
Confidence            776665553332 666666666544

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.90  E-value=0.00058  Score=63.11  Aligned_cols=28  Identities=29%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +|..++|.|+||+|||++|+.|++.+..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~   31 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRL   31 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4468899999999999999999998743

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.90  E-value=0.0096  Score=59.60  Aligned_cols=41  Identities=17%  Similarity=0.185  Sum_probs=31.5

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ++.++.++||+|+|||+++..||..+..   ....+.-+|+.-+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~~d~~  137 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQ  137 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEECCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEecCCcc
Confidence            3478888999999999999999998865   4445666665433

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.89  E-value=0.0012  Score=67.31  Aligned_cols=81  Identities=16%  Similarity=0.304  Sum_probs=52.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC-CCCch---hhhhhHH--h------HHHHHHHhCCCCeEE
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG-NYTEL---ESIKHFF--D------SLAALVKKRPYSVVL  306 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s-~~~~~---~~~s~li--G------~lt~al~~~p~~Vll  306 (550)
                      ..++++||+|+|||++.++|+..+..   . ...+.++-. ++.-.   ..++ ++  |      .+..+++..| .+++
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~~~---~-~g~i~i~~~~e~~~~~~~~~i~-~~~ggg~~~r~~la~aL~~~p-~ili  245 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFIPK---E-ERIISIEDTEEIVFKHHKNYTQ-LFFGGNITSADCLKSCLRMRP-DRII  245 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGSCT---T-SCEEEEESSCCCCCSSCSSEEE-EECBTTBCHHHHHHHHTTSCC-SEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcC---C-CcEEEECCeeccccccchhEEE-EEeCCChhHHHHHHHHhhhCC-CEEE
Confidence            58999999999999999999988754   3 244555422 22111   1111 22  2      5667777777 7999


Q ss_pred             eccccccCHHHHHHHHHhhhhc
Q 036633          307 FDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       307 lDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      +||+-.  ..+++. ++.+..|
T Consensus       246 ldE~~~--~e~~~~-l~~~~~g  264 (330)
T 2pt7_A          246 LGELRS--SEAYDF-YNVLCSG  264 (330)
T ss_dssp             ECCCCS--THHHHH-HHHHHTT
T ss_pred             EcCCCh--HHHHHH-HHHHhcC
Confidence            999875  456554 4445455

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.88  E-value=0.00054  Score=64.22  Aligned_cols=26  Identities=31%  Similarity=0.328  Sum_probs=23.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++|+||||+|||++|+.||+.+..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l~~   51 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKLNV   51 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            58999999999999999999999854

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.88  E-value=0.0039  Score=58.63  Aligned_cols=35  Identities=29%  Similarity=0.293  Sum_probs=27.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      ..++++||||+|||++++.++. .     ...+.+.++...
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~-~-----~~~~v~~i~~~~   55 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL-L-----SGKKVAYVDTEG   55 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH-H-----HCSEEEEEESSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-H-----cCCcEEEEECCC
Confidence            6889999999999999999998 2     233667777654

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.83  E-value=0.00082  Score=61.29  Aligned_cols=35  Identities=23%  Similarity=0.370  Sum_probs=27.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      ..++|+||||+|||++++.|+..+.        .+.+|...+.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~g--------~~~i~~d~~~   43 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQLH--------AAFLDGDFLH   43 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHT--------CEEEEGGGGC
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhhC--------cEEEeCcccc
Confidence            6889999999999999999998873        3456655443

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.83  E-value=0.00059  Score=62.86  Aligned_cols=35  Identities=11%  Similarity=0.107  Sum_probs=27.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      .++|.||||+|||++|+.|++.+..   ...++..+++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~---~g~~~~~~~~   37 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDN---QGINNKIINY   37 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT---TTCCEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh---cCceEEEEEC
Confidence            5789999999999999999999864   2234555553

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.81  E-value=0.00066  Score=62.50  Aligned_cols=26  Identities=12%  Similarity=0.194  Sum_probs=23.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++|.||||+|||++|+.|++.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~   29 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRK   29 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999998864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.80  E-value=0.011  Score=63.19  Aligned_cols=28  Identities=21%  Similarity=0.246  Sum_probs=24.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++.+++|+||+|+|||++++.|+..+..
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~  319 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLARQFEQ  319 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence            3478999999999999999999998765

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.80  E-value=0.00072  Score=62.07  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=23.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++|+||||+|||++|+.|++.+..
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~~~   37 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKSGL   37 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            57899999999999999999998844

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.80  E-value=0.003  Score=66.87  Aligned_cols=41  Identities=20%  Similarity=0.250  Sum_probs=30.6

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .|.+++|+||+|||||+++..||..+..   ......-+++..+
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~---~G~kVllv~~D~~  138 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQK---RGLKPALIAADTY  138 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHH---HHCCEEEECCSCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEecccc
Confidence            3579999999999999999999988754   2234555555443

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.78  E-value=0.0011  Score=67.92  Aligned_cols=49  Identities=14%  Similarity=0.270  Sum_probs=35.5

Q ss_pred             cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++.+..++.+...+...      +. ++...+++|+||+|+|||+++++||..+..
T Consensus         2 ~~~~~L~~~il~~l~~~------i~-~g~~~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A            2 VDTHKLADDVLQLLDNR------IE-DNYRVCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             CCHHHHHHHHHHHHHHT------TT-TCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHH------hc-cCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            44566666666666543      11 222257899999999999999999999865

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.77  E-value=0.00075  Score=64.70  Aligned_cols=36  Identities=19%  Similarity=0.412  Sum_probs=29.1

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      .+|.+++|.||||+||+|.|+.|++.+        .+..+++++
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~--------g~~hIstGd   62 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF--------HFNHLSSGD   62 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH--------CCEEECHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH--------CCceEcHHH
Confidence            355788899999999999999999987        356666544

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.77  E-value=0.00083  Score=65.77  Aligned_cols=25  Identities=48%  Similarity=0.684  Sum_probs=22.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++++||||+|||++|+.||+.+..
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~   27 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGW   27 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCC
Confidence            5789999999999999999998855

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.77  E-value=0.0008  Score=62.27  Aligned_cols=26  Identities=35%  Similarity=0.405  Sum_probs=23.2

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHh
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ++..++|+|+||+|||++++.|++.+
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l   34 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAEL   34 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            33689999999999999999999984

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.74  E-value=0.00086  Score=61.98  Aligned_cols=33  Identities=33%  Similarity=0.462  Sum_probs=26.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      ..+.++||||+|||++++.|+..+..      ..+.+|.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~~~~------g~i~i~~   42 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANLPGV------PKVHFHS   42 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSSS------CEEEECT
T ss_pred             eEEEEECCCCCCHHHHHHHHHhccCC------CeEEEcc
Confidence            68999999999999999999986432      4566653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.74  E-value=0.0049  Score=60.09  Aligned_cols=25  Identities=28%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|.++|+..+.
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5788999999999999999998764

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.73  E-value=0.00069  Score=61.95  Aligned_cols=25  Identities=40%  Similarity=0.468  Sum_probs=22.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++|.||||+|||++|+.||+.+.-
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~   30 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDL   30 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            5889999999999999999998844

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.71  E-value=0.003  Score=64.93  Aligned_cols=72  Identities=15%  Similarity=0.236  Sum_probs=46.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh------------------HHHHH-HHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD------------------SLAAL-VKK  299 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG------------------~lt~a-l~~  299 (550)
                      ..++++||||+|||++|..++..+..   ...+.+.++...-.+.. ...-+|                  .+... ++.
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~  137 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS  137 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence            58899999999999999999877654   34466677765432221 111122                  12222 234


Q ss_pred             CCCCeEEeccccccC
Q 036633          300 RPYSVVLFDKIEKAN  314 (550)
Q Consensus       300 ~p~~VlllDEIeka~  314 (550)
                      ....+|++|++..+.
T Consensus       138 ~~~~lIVIDsl~~l~  152 (349)
T 2zr9_A          138 GALDIIVIDSVAALV  152 (349)
T ss_dssp             TCCSEEEEECGGGCC
T ss_pred             CCCCEEEEcChHhhc
Confidence            445899999998775

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.69  E-value=0.0009  Score=61.71  Aligned_cols=27  Identities=15%  Similarity=0.086  Sum_probs=23.8

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |..++|.|+||+|||++|+.|++.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~   29 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGY   29 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            467899999999999999999998743

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.69  E-value=0.001  Score=62.26  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=23.6

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      |..++|+||||+|||++|+.|++.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999999873

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.68  E-value=0.0039  Score=59.62  Aligned_cols=41  Identities=12%  Similarity=0.161  Sum_probs=29.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccC---CCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDN---NDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~---~~~~~~li~id~s~  279 (550)
                      ..++|+||||+|||++++.++......   +......+.++...
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            689999999999999999999852110   00134667777655

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.68  E-value=0.00096  Score=61.78  Aligned_cols=28  Identities=18%  Similarity=0.240  Sum_probs=24.4

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +|..++|.||||+|||++|+.|++.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~   35 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY   35 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3468999999999999999999998743

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.68  E-value=0.0008  Score=61.13  Aligned_cols=25  Identities=24%  Similarity=0.521  Sum_probs=22.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.|+||||+|||++++.||..+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4789999999999999999999873

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.67  E-value=0.0037  Score=58.61  Aligned_cols=81  Identities=16%  Similarity=0.178  Sum_probs=53.0

Q ss_pred             eeEEEeccCCCcHH-HHHHHHHHHhccCCCCCCceeEEecC---CCCchhhhhhHHh------------HHHHHHHhCCC
Q 036633          239 GLFLFAGPNCSGKA-ELAKAIANELYDNNDNDNHLIHFDMG---NYTELESIKHFFD------------SLAALVKKRPY  302 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT-~lAk~la~~l~~~~~~~~~li~id~s---~~~~~~~~s~liG------------~lt~al~~~p~  302 (550)
                      ...+++||.|+||| +|.+++.++...   . ...+.+.-+   .|. ..-++++ |            .+.+..  .+.
T Consensus        21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~-~kvl~~kp~~D~R~~-~~i~S~~-g~~~~A~~~~~~~d~~~~~--~~~   92 (195)
T 1w4r_A           21 QIQVILGPMFSGKSTELMRRVRRFQIA---Q-YKCLVIKYAKDTRYS-SSFCTHD-RNTMEALPACLLRDVAQEA--LGV   92 (195)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHT---T-CCEEEEEETTCCCGG-GSCCHHH-HHHSEEEEESSGGGGHHHH--HTC
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHc---C-CeEEEEccccCccch-hhhhhcc-CCcccceecCCHHHHHHhc--cCC
Confidence            56788999999999 899999988765   3 345555433   333 1122222 3            233322  246


Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhc
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .||++||+.-+ +++...+..+.+.|
T Consensus        93 DvIlIDEaQFf-k~~ve~~~~L~~~g  117 (195)
T 1w4r_A           93 AVIGIDEGQFF-PDIVEFCEAMANAG  117 (195)
T ss_dssp             SEEEESSGGGC-TTHHHHHHHHHHTT
T ss_pred             CEEEEEchhhh-HHHHHHHHHHHHCC
Confidence            89999999999 77666665555656

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.67  E-value=0.00097  Score=60.45  Aligned_cols=26  Identities=27%  Similarity=0.259  Sum_probs=24.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .+++|.|++|+|||++|+.||+.+.-
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~   33 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKL   33 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            58999999999999999999999855

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.66  E-value=0.00077  Score=61.75  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=20.4

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +|..++|.|+||+|||++|+.|++.+..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~   31 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPG   31 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4568899999999999999999998755

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=96.66  E-value=0.025  Score=61.47  Aligned_cols=74  Identities=12%  Similarity=0.185  Sum_probs=50.7

Q ss_pred             CCCeEEecccccc----CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc
Q 036633          301 PYSVVLFDKIEKA----NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS  376 (550)
Q Consensus       301 p~~VlllDEIeka----~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~  376 (550)
                      |+-||++||+..+    +.++...|.++...|  +.+          .+.+|++|...+                   ..
T Consensus       343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~G--Ra~----------GIhLIlaTQRPs-------------------~d  391 (574)
T 2iut_A          343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKA--RAA----------GIHLILATQRPS-------------------VD  391 (574)
T ss_dssp             CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHC--TTT----------TEEEEEEESCCC-------------------TT
T ss_pred             CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHH--hhC----------CeEEEEEecCcc-------------------cc
Confidence            3458999999855    567888899999998  611          233555554432                   12


Q ss_pred             CCChhhhhhccceeEecCCCCCCHHHHHHHHH
Q 036633          377 LFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE  408 (550)
Q Consensus       377 ~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~  408 (550)
                      .++..+.+.|...|.|.   .-+..+...|+.
T Consensus       392 ~I~~~Iran~~~RI~lr---v~s~~Dsr~ILd  420 (574)
T 2iut_A          392 VITGLIKANIPTRIAFQ---VSSKIDSRTILD  420 (574)
T ss_dssp             TSCHHHHHTCCEEEEEC---CSCHHHHHHHHS
T ss_pred             cccHHHHhhhccEEEEE---cCCHHHHHHhcC
Confidence            45666777787788888   777777776654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.65  E-value=0.0046  Score=63.68  Aligned_cols=73  Identities=15%  Similarity=0.217  Sum_probs=47.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh------------------hhHHhHHHHHHHhC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI------------------KHFFDSLAALVKKR  300 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~------------------s~liG~lt~al~~~  300 (550)
                      ..++++||||+|||++|..++..+..   ...+.+.++..+-.+....                  ..+...+...++..
T Consensus        64 ~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~  140 (356)
T 1u94_A           64 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG  140 (356)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhcc
Confidence            58899999999999999999887654   3446777777543222110                  01111122233455


Q ss_pred             CCCeEEeccccccC
Q 036633          301 PYSVVLFDKIEKAN  314 (550)
Q Consensus       301 p~~VlllDEIeka~  314 (550)
                      ...+|++|.+..+.
T Consensus       141 ~~~lVVIDsl~~l~  154 (356)
T 1u94_A          141 AVDVIVVDSVAALT  154 (356)
T ss_dssp             CCSEEEEECGGGCC
T ss_pred             CCCEEEEcCHHHhc
Confidence            67899999998765

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.64  E-value=0.00089  Score=61.59  Aligned_cols=25  Identities=24%  Similarity=0.300  Sum_probs=22.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++|+|+||+|||++|+.|++.+.-
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~   28 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALGV   28 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCC
Confidence            6889999999999999999998854

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.63  E-value=0.0011  Score=61.96  Aligned_cols=28  Identities=14%  Similarity=0.322  Sum_probs=24.4

Q ss_pred             cCCCeeEEEeccCCCcHHHHHHHHHHHh
Q 036633          235 RRQLGLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      +.+|..++|.||||+|||++|+.|++.+
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3445788999999999999999999886

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.61  E-value=0.0011  Score=63.08  Aligned_cols=27  Identities=19%  Similarity=0.270  Sum_probs=24.0

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |..++|.||||+|||++|+.||+.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~~   30 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFHA   30 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            368899999999999999999998743

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.60  E-value=0.0094  Score=59.91  Aligned_cols=27  Identities=22%  Similarity=0.351  Sum_probs=24.6

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |.++.|+||+|+|||++++.||..+..
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~l~~  126 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHRLKN  126 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            378999999999999999999998865

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.57  E-value=0.0021  Score=62.41  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=24.0

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHh
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      +|..++|.||||+|||++|+.|++.+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999999887

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.57  E-value=0.0011  Score=67.70  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=28.2

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      +..++++||||||||++|..||+.+.+      .+|..|
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~------eiIs~D   72 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFPL------EVINSD   72 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSCE------EEEECC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCCC------cEEccc
Confidence            358999999999999999999999866      666555

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.57  E-value=0.0023  Score=59.03  Aligned_cols=36  Identities=22%  Similarity=0.232  Sum_probs=28.7

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      +..++|.|+||+|||++++.|+..+..   ...++..+|
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~---~~~~~~~~~   48 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQK---EGYRVEVLD   48 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEee
Confidence            368899999999999999999999865   333455555

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.55  E-value=0.0011  Score=62.98  Aligned_cols=33  Identities=33%  Similarity=0.653  Sum_probs=27.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .++|.||||+||+|.|+.||+.+        .+.+++++++
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~--------g~~~istGdl   34 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK--------GFVHISTGDI   34 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH--------CCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH--------CCeEEcHHHH
Confidence            57899999999999999999987        4667776544

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.55  E-value=0.0016  Score=66.07  Aligned_cols=32  Identities=38%  Similarity=0.588  Sum_probs=27.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      ..++++||||+|||++|+.||+.+..      .++..|
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~------~iis~D   37 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPC------ELISVD   37 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCE------EEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCC------cEEecc
Confidence            57899999999999999999999865      566555

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.55  E-value=0.0021  Score=60.20  Aligned_cols=27  Identities=33%  Similarity=0.403  Sum_probs=24.3

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +..+.|.||||+|||++++.|+..+..
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l~~   51 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQMLYQ   51 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            378899999999999999999999854

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.54  E-value=0.0013  Score=59.78  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=21.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++|.||||+|||++|+.|++.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~   25 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHhh
Confidence            47899999999999999999983

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.52  E-value=0.0012  Score=59.93  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=22.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++|.|+||+|||++|+.|++.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~   28 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALGY   28 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6889999999999999999998844

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.50  E-value=0.0024  Score=60.20  Aligned_cols=25  Identities=32%  Similarity=0.470  Sum_probs=23.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||||+|||++++.|+..+.
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHh
Confidence            7889999999999999999999986

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.50  E-value=0.0012  Score=60.82  Aligned_cols=25  Identities=36%  Similarity=0.519  Sum_probs=22.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++|.||||+|||++|+.|++.+.
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~   29 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELG   29 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999999873

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.50  E-value=0.0013  Score=63.01  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=23.5

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +|..++|.||||+|||++|+.|++.+.
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            346899999999999999999999873

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.48  E-value=0.0011  Score=63.10  Aligned_cols=27  Identities=19%  Similarity=0.230  Sum_probs=24.0

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +|..++|.||||+|||++|+.||+.+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            446789999999999999999999873

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.48  E-value=0.0015  Score=62.76  Aligned_cols=28  Identities=21%  Similarity=0.237  Sum_probs=24.4

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++..++|.|+||+|||++|+.||+.+.-
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~   42 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV   42 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3467899999999999999999998843

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.46  E-value=0.0069  Score=74.55  Aligned_cols=74  Identities=12%  Similarity=0.159  Sum_probs=52.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhh-----------------HHhHHHHHHH-hC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKH-----------------FFDSLAALVK-KR  300 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~-----------------liG~lt~al~-~~  300 (550)
                      .+++|+||||||||++|.+++...-.   ...+...+++.+..+......                 ....+.+.+. ..
T Consensus      1082 ~~vll~G~~GtGKT~la~~~~~ea~k---~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~ 1158 (2050)
T 3cmu_A         1082 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1158 (2050)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhC
Confidence            68999999999999999998876655   455777788877665544222                 1124444444 34


Q ss_pred             CCCeEEeccccccCH
Q 036633          301 PYSVVLFDKIEKANS  315 (550)
Q Consensus       301 p~~VlllDEIeka~~  315 (550)
                      ...+|++|++..+.|
T Consensus      1159 ~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A         1159 AVDVIVVDSVAALTP 1173 (2050)
T ss_dssp             CCSEEEESCGGGCCC
T ss_pred             CCCEEEECCcccccc
Confidence            468999999988844

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=96.45  E-value=0.025  Score=65.64  Aligned_cols=47  Identities=21%  Similarity=0.104  Sum_probs=38.0

Q ss_pred             hcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHH
Q 036633          204 LKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       204 L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      +.+..+|.+..++.|...+...          +.+.++.++||.|+|||+||+.++.
T Consensus       126 ltk~~VGRe~eLeeL~elL~~~----------d~~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          126 FAKYNVSRLQPYLKLRQALLEL----------RPAKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             CCCSCCCCHHHHHHHHHHHHHC----------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHhcc----------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence            3445699999999998888753          0136889999999999999999985

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.45  E-value=0.0015  Score=60.51  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++|.||||+|||++|+.|++.+.
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5889999999999999999999873

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.44  E-value=0.004  Score=64.12  Aligned_cols=26  Identities=19%  Similarity=0.321  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+|.++|+-.+..
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl~~p   56 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGFEQP   56 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCCC
Confidence            57889999999999999999987643

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.42  E-value=0.0017  Score=58.55  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=22.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++|.|+||+|||++|+.|++.+.-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~   26 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNI   26 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5789999999999999999998754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.40  E-value=0.014  Score=60.16  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=25.1

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .|.+++|+||+|+|||++++.||..+..
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~  183 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN  183 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence            3479999999999999999999998865

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.39  E-value=0.0045  Score=64.26  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|+||+|+|||+|.++|+-.+..
T Consensus        30 e~~~llGpsGsGKSTLLr~iaGl~~p   55 (381)
T 3rlf_A           30 EFVVFVGPSGCGKSTLLRMIAGLETI   55 (381)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEEcCCCchHHHHHHHHHcCCCC
Confidence            57889999999999999999987643

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.38  E-value=0.0018  Score=61.12  Aligned_cols=25  Identities=20%  Similarity=0.194  Sum_probs=22.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++|.||||+|||++|+.|++.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~   26 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEI   26 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999998743

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.37  E-value=0.0018  Score=61.26  Aligned_cols=24  Identities=17%  Similarity=0.231  Sum_probs=21.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .++|+||||+|||++|+.|++.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999998873

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.36  E-value=0.15  Score=54.82  Aligned_cols=85  Identities=13%  Similarity=0.191  Sum_probs=50.3

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----------h-----------hhHHhHHH
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----------I-----------KHFFDSLA  294 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----------~-----------s~liG~lt  294 (550)
                      +|.+++|+|++|||||+++..||..+..   .......+++..|.....           +           ..+.....
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~---~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al  176 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR---KGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGV  176 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHH
Confidence            4589999999999999999999988765   333555566544432110           0           00000111


Q ss_pred             HHHHhCCCCeEEeccccccCH--HHHHHHHHh
Q 036633          295 ALVKKRPYSVVLFDKIEKANS--SILNLLLKI  324 (550)
Q Consensus       295 ~al~~~p~~VlllDEIeka~~--~v~~~Ll~~  324 (550)
                      ..+....+.++|+|-....+.  .....+..+
T Consensus       177 ~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~  208 (504)
T 2j37_W          177 EKFKNENFEIIIVDTSGRHKQEDSLFEEMLQV  208 (504)
T ss_dssp             HHHHHTTCCEEEEEECCCCTTCHHHHHHHHHH
T ss_pred             HHHHHCCCcEEEEeCCCCcccchhHHHHHHHH
Confidence            223336678999998877653  444444433

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.36  E-value=0.0057  Score=64.37  Aligned_cols=84  Identities=21%  Similarity=0.359  Sum_probs=51.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC-CCCchh----hhhhHHh-----HHHHHHHhCCCCeEEec
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG-NYTELE----SIKHFFD-----SLAALVKKRPYSVVLFD  308 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s-~~~~~~----~~s~liG-----~lt~al~~~p~~VlllD  308 (550)
                      +.++++||+|+|||++.+++...+..   ....++.+.-. ++.-.+    .+..-+|     .+..++++.| .++++.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~---~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~p-d~i~vg  243 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNS---SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDP-DVVMVG  243 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCC---TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCC-SEEEES
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCC---CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCC-CeEEEc
Confidence            78999999999999999999998865   44455544321 221100    0111122     4556677877 788999


Q ss_pred             cccccCHHHHHHHHHhhhhc
Q 036633          309 KIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       309 EIeka~~~v~~~Ll~~ld~g  328 (550)
                      ||..  +......++....|
T Consensus       244 EiRd--~et~~~~l~a~~tG  261 (418)
T 1p9r_A          244 EIRD--LETAQIAVQASLTG  261 (418)
T ss_dssp             CCCS--HHHHHHHHHHHHTT
T ss_pred             CcCC--HHHHHHHHHHHHhC
Confidence            9862  33333334454556

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.35  E-value=0.0027  Score=62.24  Aligned_cols=26  Identities=27%  Similarity=0.415  Sum_probs=23.5

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      |..++|+|+||+|||++|+.|++.+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46889999999999999999999864

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.35  E-value=0.0019  Score=60.98  Aligned_cols=24  Identities=25%  Similarity=0.481  Sum_probs=22.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.|+||||+|||++++.|+..+
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            688999999999999999999876

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.33  E-value=0.0054  Score=60.19  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+..+.
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5889999999999999999998764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.32  E-value=0.0035  Score=57.34  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=28.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      ..+.|.|++|+|||++++.|+..+..   ..-+++.+|
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d   40 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLD   40 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEEC
Confidence            67889999999999999999998843   222666666

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.32  E-value=0.0022  Score=59.01  Aligned_cols=24  Identities=8%  Similarity=0.307  Sum_probs=22.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.|+||||+|||++++.|+..+
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            588999999999999999999875

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.31  E-value=0.002  Score=60.54  Aligned_cols=25  Identities=28%  Similarity=0.534  Sum_probs=22.9

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHh
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      +..++|+||||+|||++++.|++.+
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3688999999999999999999986

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.31  E-value=0.0018  Score=61.50  Aligned_cols=26  Identities=23%  Similarity=0.204  Sum_probs=23.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++|.||||+|||++|+.||+.+.-
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~~   31 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYGL   31 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCc
Confidence            57899999999999999999998843

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.29  E-value=0.0023  Score=64.55  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=23.8

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +..++++||||||||++|..||+.+.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~   29 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNG   29 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCcc
Confidence            347889999999999999999998755

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.28  E-value=0.0026  Score=59.50  Aligned_cols=27  Identities=26%  Similarity=0.208  Sum_probs=24.2

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |..++|.||||+|||++|+.|++.+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            357899999999999999999999865

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.28  E-value=0.0071  Score=62.52  Aligned_cols=73  Identities=19%  Similarity=0.257  Sum_probs=45.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh------------------hhHHhHHHHHHHhC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI------------------KHFFDSLAALVKKR  300 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~------------------s~liG~lt~al~~~  300 (550)
                      ..++++||||+|||++|..++..+..   ...+.+.+++..-.+....                  ..++..+...++..
T Consensus        75 ~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~  151 (366)
T 1xp8_A           75 RITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG  151 (366)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence            57888999999999999998877654   3346777776543222110                  01111222223345


Q ss_pred             CCCeEEeccccccC
Q 036633          301 PYSVVLFDKIEKAN  314 (550)
Q Consensus       301 p~~VlllDEIeka~  314 (550)
                      ...+|++|.+..+.
T Consensus       152 ~~~lVVIDsl~~l~  165 (366)
T 1xp8_A          152 AIDVVVVDSVAALT  165 (366)
T ss_dssp             CCSEEEEECTTTCC
T ss_pred             CCCEEEEeChHHhc
Confidence            56899999987664

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.28  E-value=0.0026  Score=59.66  Aligned_cols=28  Identities=25%  Similarity=0.380  Sum_probs=24.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +|..++|.|+||+|||++|+.|++.+..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~   36 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN   36 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3468999999999999999999998765

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.27  E-value=0.0025  Score=59.68  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=27.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..+.|+||+|+|||++++.|+..+ +       .+.+|...+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~~~-g-------~~~i~~d~~   63 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVADET-G-------LEFAEADAF   63 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH-C-------CEEEEGGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhh-C-------CeEEccccc
Confidence            688999999999999999999987 3       355665544

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.27  E-value=0.0023  Score=60.05  Aligned_cols=28  Identities=18%  Similarity=0.381  Sum_probs=24.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +|..++|.|++|+|||++|+.|++.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~   35 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCA   35 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4468999999999999999999998865

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.26  E-value=0.011  Score=59.08  Aligned_cols=42  Identities=12%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +|.+++|+||+|+|||+++..||..+...  ....+.-+++..+
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G~~V~lv~~D~~  145 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLE--KHKKIAFITTDTY  145 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCCEEEEECCCS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHh--cCCEEEEEecCcc
Confidence            34799999999999999999999888530  1225555665554

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.25  E-value=0.0032  Score=61.30  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=32.8

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCC-----CCceeEEecCCCCc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDN-----DNHLIHFDMGNYTE  282 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-----~~~li~id~s~~~~  282 (550)
                      +|..+.+.||+|+|||++|+.|++.+..   .     ......+++..|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~---~~~d~~~~~~~~i~~D~~~~   68 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ---NEVDYRQKQVVILSQDSFYR   68 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTG---GGSCGGGCSEEEEEGGGGBC
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhh---hcccccCCceEEEecCcccc
Confidence            4578999999999999999999998754   1     11344688877753

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.18  E-value=0.013  Score=64.53  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=22.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~~p  407 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFYDV  407 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCC
Confidence            57889999999999999999987643

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.17  E-value=0.003  Score=61.18  Aligned_cols=27  Identities=30%  Similarity=0.385  Sum_probs=24.1

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +|..++|.||+|+|||++++.|++.+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            357899999999999999999998873

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.17  E-value=0.0057  Score=63.46  Aligned_cols=60  Identities=20%  Similarity=0.277  Sum_probs=38.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKAN  314 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~  314 (550)
                      ..++++||||+|||+++++|+..+.+      .++.++.+.   . .....+|.+      -...++++|+++...
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~~~~~g------~~~~~~~~~---~-~~~~~lg~~------~q~~~~l~dd~~~~~  229 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALLELCGG------KALNVNLPL---D-RLNFELGVA------IDQFLVVFEDVKGTG  229 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCC------EEECCSSCT---T-THHHHHGGG------TTCSCEEETTCCCST
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcCC------cEEEEeccc---h-hHHHHHHHh------cchhHHHHHHHHHHH
Confidence            58899999999999999999998755      444433322   1 111123311      122467999998654

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.16  E-value=0.0042  Score=57.11  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=22.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .+.|.|++|+|||++|+.|++.+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~   25 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLK   25 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999883

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.16  E-value=0.0056  Score=61.21  Aligned_cols=30  Identities=30%  Similarity=0.435  Sum_probs=25.9

Q ss_pred             cCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          235 RRQLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +++|..+.++||||+|||++|+.|+..+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            335578999999999999999999998864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.15  E-value=0.0028  Score=59.51  Aligned_cols=34  Identities=32%  Similarity=0.407  Sum_probs=25.5

Q ss_pred             hcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          229 KKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       229 ~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      -+|+...-.+ ..+.++||||+|||++|+.|+..+
T Consensus        11 ~~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           11 SSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             ---CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cccccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3455444444 688899999999999999999865

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.15  E-value=0.011  Score=64.89  Aligned_cols=26  Identities=23%  Similarity=0.207  Sum_probs=22.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~~~p  393 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRFYDV  393 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            56789999999999999999987643

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=96.14  E-value=0.012  Score=64.87  Aligned_cols=28  Identities=14%  Similarity=0.292  Sum_probs=23.4

Q ss_pred             CCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          301 PYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       301 p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      +..+|++||+..++...+..|++.+..+
T Consensus       262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~~  289 (608)
T 1w36_D          262 HLDVLVVDEASMIDLPMMSRLIDALPDH  289 (608)
T ss_dssp             SCSEEEECSGGGCBHHHHHHHHHTCCTT
T ss_pred             CCCEEEEechhhCCHHHHHHHHHhCCCC
Confidence            4579999999999998888888877554

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.13  E-value=0.006  Score=61.41  Aligned_cols=42  Identities=14%  Similarity=0.168  Sum_probs=32.5

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhc--cCCCCCCceeEEecCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELY--DNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~--~~~~~~~~li~id~s~~~  281 (550)
                      ++..+.++||+|+|||++++.|+..+.  .   ....+..+++..+.
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~---~~G~i~vi~~d~~~  122 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQALLSRWP---EHRRVELITTDGFL  122 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTST---TCCCEEEEEGGGGB
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhCC---CCCeEEEEecCCcc
Confidence            447889999999999999999999875  3   33456666666654

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.12  E-value=0.014  Score=64.24  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=22.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+++++|+..+..
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g~~~~  395 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPRLIDP  395 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCccC
Confidence            46789999999999999999987643

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.11  E-value=0.0066  Score=65.58  Aligned_cols=82  Identities=17%  Similarity=0.262  Sum_probs=50.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec-CCCCchh--h--------h----hhHHhHHHHHHHhCCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM-GNYTELE--S--------I----KHFFDSLAALVKKRPYS  303 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~-s~~~~~~--~--------~----s~liG~lt~al~~~p~~  303 (550)
                      .+++++||+|+|||++.++|+..+..    ....+.++- .++.-.+  .        +    ..+...+..+++..| .
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i~~----~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~P-D  335 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFIPP----DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRP-D  335 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCT----TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCC-S
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCCC----CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCC-C
Confidence            57999999999999999999988754    334555532 2232111  0        0    001113445667788 7


Q ss_pred             eEEeccccccCHHHHHHHHHhhhhc
Q 036633          304 VVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       304 VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      ++++.|+--.  ++. .+++.+..|
T Consensus       336 ~iivgEir~~--E~~-~~l~a~~tG  357 (511)
T 2oap_1          336 YIIVGEVRGR--EAQ-TLFQAMSTG  357 (511)
T ss_dssp             EEEESCCCST--HHH-HHHHHHHTT
T ss_pred             eEEeCCcCHH--HHH-HHHHhhcCC
Confidence            8899998642  343 345556556

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.10  E-value=0.014  Score=59.17  Aligned_cols=41  Identities=17%  Similarity=0.187  Sum_probs=29.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccC---CCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDN---NDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~---~~~~~~li~id~s~  279 (550)
                      ..++++||||+|||++|..++......   +....+.+.++...
T Consensus       108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            688999999999999999999875320   00134677777665

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.10  E-value=0.0077  Score=62.05  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+-.+.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEEcCCCchHHHHHHHHHCCCC
Confidence            5788999999999999999998764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.09  E-value=0.0078  Score=62.08  Aligned_cols=25  Identities=32%  Similarity=0.425  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+-.+.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           30 EFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHhcCCC
Confidence            5788999999999999999998764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.09  E-value=0.018  Score=63.19  Aligned_cols=26  Identities=19%  Similarity=0.172  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~~~p  395 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRFYDV  395 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57889999999999999999987653

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.07  E-value=0.0032  Score=59.57  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .++|.||||+|||++|+.|++.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g   25 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999873

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.07  E-value=0.0047  Score=57.43  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=23.1

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHh
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      |..+.|.||+|+|||++++.|++.+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999987

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.07  E-value=0.0084  Score=62.07  Aligned_cols=25  Identities=24%  Similarity=0.365  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++||-.+.
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            5788999999999999999998764

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.06  E-value=0.017  Score=63.44  Aligned_cols=25  Identities=24%  Similarity=0.248  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||++++.|+..+.
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhhccC
Confidence            4678999999999999999998764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.06  E-value=0.0034  Score=58.34  Aligned_cols=26  Identities=19%  Similarity=0.174  Sum_probs=23.4

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHH
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ++|..+.++|++|+|||++|+.|++.
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            35578999999999999999999986

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.04  E-value=0.0036  Score=58.08  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=22.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .+.|.|++|+|||++++.|++.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~   26 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGY   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCC
Confidence            5789999999999999999998854

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.04  E-value=0.0071  Score=62.22  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+-.+.
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            5788999999999999999998764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.02  E-value=0.011  Score=58.17  Aligned_cols=26  Identities=27%  Similarity=0.460  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+|.++|+..+..
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl~~p   63 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGYLSP   63 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            57889999999999999999987643

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.01  E-value=0.0038  Score=58.13  Aligned_cols=24  Identities=33%  Similarity=0.721  Sum_probs=22.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.|+||+|+|||++++.|+..+
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            578899999999999999999874

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.01  E-value=0.032  Score=58.25  Aligned_cols=41  Identities=15%  Similarity=0.180  Sum_probs=27.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccC---CCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDN---NDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~---~~~~~~li~id~s~  279 (550)
                      ..++|+||||+|||+|++.++-.....   +......+.++..+
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            689999999999999999876433210   00123567777655

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.00  E-value=0.0035  Score=58.38  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.|+||||+|||++++.|+..+
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhh
Confidence            588999999999999999999876

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.99  E-value=0.015  Score=59.72  Aligned_cols=41  Identities=24%  Similarity=0.231  Sum_probs=29.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccC---CCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDN---NDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~---~~~~~~li~id~s~  279 (550)
                      ..+.++||||+|||++++.++......   |......+.+|..+
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~  175 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN  175 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence            688999999999999999999876210   00013556777644

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.99  E-value=0.0039  Score=57.54  Aligned_cols=23  Identities=35%  Similarity=0.690  Sum_probs=20.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .++|+||+|+|||++++.|+..+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~~   26 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            67899999999999999999754

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.97  E-value=0.041  Score=52.61  Aligned_cols=20  Identities=15%  Similarity=0.335  Sum_probs=16.4

Q ss_pred             eeEEEeccCCCcHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAI  258 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~l  258 (550)
                      ..+++.||||+|||++...+
T Consensus        77 ~~~~i~g~TGsGKTt~~~~~   96 (235)
T 3llm_A           77 SVVIIRGATGCGKTTQVPQF   96 (235)
T ss_dssp             SEEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEEeCCCCCcHHhHHHH
Confidence            38899999999999865544

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=95.97  E-value=0.0034  Score=58.66  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=20.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .+.++||+|+|||++++.|+. +
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C
Confidence            578999999999999999999 5

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.95  E-value=0.0042  Score=64.77  Aligned_cols=26  Identities=23%  Similarity=0.441  Sum_probs=23.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+++.||||+|||++|..||+.+..
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~   28 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNG   28 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTE
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCC
Confidence            57889999999999999999999865

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.94  E-value=0.0042  Score=63.44  Aligned_cols=26  Identities=35%  Similarity=0.581  Sum_probs=23.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++++||||+|||++|+.||+.+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~   33 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNG   33 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCC
Confidence            47899999999999999999998854

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.94  E-value=0.11  Score=54.92  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=28.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      ..++++||||+|||++|..++..+...  ...+.+.+++.
T Consensus       204 ~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E  241 (454)
T 2r6a_A          204 DLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLE  241 (454)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECC
Confidence            688999999999999999999876430  12356666543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.91  E-value=0.011  Score=58.45  Aligned_cols=25  Identities=24%  Similarity=0.231  Sum_probs=22.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|.++|+..+.
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC
Confidence            5789999999999999999998764

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.91  E-value=0.005  Score=59.55  Aligned_cols=27  Identities=22%  Similarity=0.361  Sum_probs=23.8

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +|..+.+.||||+|||++|+.|++.+.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999999883

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.90  E-value=0.0057  Score=62.90  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=22.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|.++|+-.+.
T Consensus        32 e~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           32 ERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            5788999999999999999998764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.89  E-value=0.0041  Score=59.37  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=21.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .++|.||||+|||++|+.|++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999987

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.88  E-value=0.0058  Score=57.64  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +..++|.|++|+|||++++.|++.+.
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            36888999999999999999999886

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.86  E-value=0.0044  Score=60.59  Aligned_cols=45  Identities=18%  Similarity=0.115  Sum_probs=32.3

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |...+++.+.-.+...   .       +...+.|+||+|+|||++++.||+.+.-
T Consensus        30 ~~~~~l~~~~~~i~~~---l-------~g~~i~l~G~~GsGKSTl~~~La~~lg~   74 (250)
T 3nwj_A           30 EEQQILKKKAEEVKPY---L-------NGRSMYLVGMMGSGKTTVGKIMARSLGY   74 (250)
T ss_dssp             --CHHHHHHHHTTHHH---H-------TTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             Ccchhhhhhhhhhhhh---c-------CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4455666666655542   0       1248999999999999999999998844

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.84  E-value=0.0047  Score=58.54  Aligned_cols=24  Identities=38%  Similarity=0.624  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.|.||||+|||++|+.|++.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999999987

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.83  E-value=0.045  Score=59.43  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=25.8

Q ss_pred             CCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          231 GLSSRRQLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       231 gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ++.-+...-++.|+||+|+||||+.++|+..+.
T Consensus        18 ~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           18 GLPTPKNNTILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            344443337889999999999999999998653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=95.82  E-value=0.0079  Score=56.40  Aligned_cols=25  Identities=40%  Similarity=0.412  Sum_probs=23.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||++++.|+..+.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhC
Confidence            6889999999999999999999875

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=95.81  E-value=0.0046  Score=57.93  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=22.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.|+||+|+|||++++.|...+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            578999999999999999999876

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.80  E-value=0.068  Score=57.50  Aligned_cols=75  Identities=12%  Similarity=0.197  Sum_probs=47.1

Q ss_pred             CCCeEEeccccccC----HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhcc
Q 036633          301 PYSVVLFDKIEKAN----SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGS  376 (550)
Q Consensus       301 p~~VlllDEIeka~----~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~  376 (550)
                      |+-||++||...+-    ..+.+.|.++...|  +..          ...+|++|....                   ..
T Consensus       297 P~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~g--Ra~----------GI~LIlaTQrp~-------------------~d  345 (512)
T 2ius_A          297 PYIVVLVDEFADLMMTVGKKVEELIARLAQKA--RAA----------GIHLVLATQRPS-------------------VD  345 (512)
T ss_dssp             CEEEEEEETHHHHHHHHHHHHHHHHHHHHHHC--GGG----------TEEEEEEESCCC-------------------TT
T ss_pred             CcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHh--hhC----------CcEEEEEecCCc-------------------cc
Confidence            44589999996432    35666777777777  511          223455555432                   12


Q ss_pred             CCChhhhhhccceeEecCCCCCCHHHHHHHHHH
Q 036633          377 LFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW  409 (550)
Q Consensus       377 ~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~  409 (550)
                      .++..+.+.+..-|.|.   --+..+...|+..
T Consensus       346 vl~~~i~~n~~~RI~lr---v~s~~dsr~ilg~  375 (512)
T 2ius_A          346 VITGLIKANIPTRIAFT---VSSKIDSRTILDQ  375 (512)
T ss_dssp             TSCHHHHHHCCEEEEEC---CSSHHHHHHHHSS
T ss_pred             cccHHHHhhcCCeEEEE---cCCHHHHHHhcCC
Confidence            45666777777778888   7778887776643

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.80  E-value=0.048  Score=55.85  Aligned_cols=28  Identities=18%  Similarity=0.169  Sum_probs=24.6

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++..+.|+|+||+|||+++..|+..+..
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~  105 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIE  105 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3478999999999999999999988755

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=95.76  E-value=0.006  Score=57.44  Aligned_cols=24  Identities=13%  Similarity=0.349  Sum_probs=22.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++|+||||+|||+|++.|.+..
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECcCCCCHHHHHHHHHhhC
Confidence            688999999999999999999875

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.74  E-value=0.0097  Score=61.35  Aligned_cols=82  Identities=18%  Similarity=0.305  Sum_probs=49.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe-cCCCCch---hh---hh----hH---Hh-----HHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD-MGNYTEL---ES---IK----HF---FD-----SLAALVKK  299 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id-~s~~~~~---~~---~s----~l---iG-----~lt~al~~  299 (550)
                      ..++++||+|+|||+++++|+..+..    ....+.++ ..++...   +.   +.    .+   .+     .+..+++.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~~~----~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~  251 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEIPF----DQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM  251 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTSCT----TSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCC----CceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc
Confidence            58999999999999999999987754    22444444 2222110   00   00    00   11     33444555


Q ss_pred             CCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          300 RPYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       300 ~p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .| .+++++|+..  ..+.+ +++.+..|
T Consensus       252 ~p-d~~l~~e~r~--~~~~~-~l~~l~~g  276 (361)
T 2gza_A          252 KP-TRILLAELRG--GEAYD-FINVAASG  276 (361)
T ss_dssp             CC-SEEEESCCCS--THHHH-HHHHHHTT
T ss_pred             CC-CEEEEcCchH--HHHHH-HHHHHhcC
Confidence            56 6899999874  34444 56667777

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=95.74  E-value=0.01  Score=61.39  Aligned_cols=25  Identities=24%  Similarity=0.373  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+-.+.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCC
Confidence            5788999999999999999998764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=95.73  E-value=0.0045  Score=57.97  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=19.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      .+.|+||+|+|||++++.|+.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999997

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.69  E-value=0.006  Score=56.85  Aligned_cols=25  Identities=32%  Similarity=0.531  Sum_probs=22.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .+.+.||+|+|||++|+.||+.+.-
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~   28 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGV   28 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC
Confidence            7889999999999999999998743

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=95.65  E-value=0.01  Score=60.78  Aligned_cols=25  Identities=28%  Similarity=0.400  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+-.+.
T Consensus        27 e~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           27 EYFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCccHHHHHHHHHcCCC
Confidence            5788999999999999999998764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.65  E-value=0.026  Score=60.12  Aligned_cols=88  Identities=14%  Similarity=0.184  Sum_probs=51.3

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch--------------hhh-hhHHh--------H
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL--------------ESI-KHFFD--------S  292 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~--------------~~~-s~liG--------~  292 (550)
                      .+|..++|+|.||+|||++++.|++.++.   ...+...++...+...              ... .+...        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~---~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~  113 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNF---IGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALND  113 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhc---cCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999998865   2234444443222111              000 00011        1


Q ss_pred             HHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhh
Q 036633          293 LAALVKKRPYSVVLFDKIEKANSSILNLLLKILKT  327 (550)
Q Consensus       293 lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~  327 (550)
                      +...+....+.++++|.... ..+....+.+.+..
T Consensus       114 ~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A          114 VRKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            13334445666889998765 55555666665543

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.61  E-value=0.0068  Score=57.28  Aligned_cols=23  Identities=30%  Similarity=0.354  Sum_probs=21.4

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHH
Q 036633          238 LGLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      |..+.|.|++|+|||++++.|++
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999998

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.61  E-value=0.017  Score=59.55  Aligned_cols=26  Identities=15%  Similarity=0.227  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+|.++|+..+..
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL~~p   80 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLLERP   80 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEEcCCCchHHHHHHHHhcCCCC
Confidence            58899999999999999999987643

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.60  E-value=0.0067  Score=60.24  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=22.2

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHH
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      .+|..+.++|++|+|||++|+.|++
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999994

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=95.60  E-value=0.0068  Score=56.53  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.4

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .++|+||||+|||+|++.|.+..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47899999999999999998765

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.59  E-value=0.026  Score=57.56  Aligned_cols=41  Identities=17%  Similarity=0.166  Sum_probs=29.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccC---CCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDN---NDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~---~~~~~~li~id~s~  279 (550)
                      ..++++||||+|||++|..++...-..   +....+.+.++...
T Consensus       123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            688999999999999999998863110   00133677777655

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.55  E-value=0.013  Score=59.01  Aligned_cols=27  Identities=19%  Similarity=0.188  Sum_probs=24.6

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |..+.|+||+|+|||++++.||..+..
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~  128 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQN  128 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            478999999999999999999998865

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.54  E-value=0.0047  Score=61.76  Aligned_cols=42  Identities=5%  Similarity=0.178  Sum_probs=29.6

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      ++..+.+.||+|+|||++|+.|++.+..   ....+..+++..|.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~---~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRR---EGVKAVSIEGDAFH   45 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHH---HTCCEEEEEGGGGB
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhh---cCCCeeEeecchhh
Confidence            3457899999999999999999998753   22236677877775

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.54  E-value=0.007  Score=56.66  Aligned_cols=34  Identities=12%  Similarity=0.133  Sum_probs=27.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..+.++|++|+|||++|+.|++.++        +..+|+..+
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~lg--------~~vid~D~~   46 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNKYG--------AHVVNVDRI   46 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHC--------CEEEEHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC--------CEEEECcHH
Confidence            6788999999999999999999863        344665554

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.50  E-value=0.012  Score=56.24  Aligned_cols=38  Identities=13%  Similarity=0.143  Sum_probs=29.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      ..++++||||+|||++|..++..+..   ...+.+.++..+
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~   61 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE   61 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence            58899999999999999888776544   344666676543

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=95.47  E-value=0.038  Score=58.29  Aligned_cols=82  Identities=12%  Similarity=0.126  Sum_probs=47.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHH------------hHHHHHHHhC------
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFF------------DSLAALVKKR------  300 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~li------------G~lt~al~~~------  300 (550)
                      ...++.|+||+|||++...++..  .      +.+.+-...-....-..++.            -.+..++.+.      
T Consensus       162 ~v~~I~G~aGsGKTt~I~~~~~~--~------~~lVlTpT~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~  233 (446)
T 3vkw_A          162 KVVLVDGVPGCGKTKEILSRVNF--E------EDLILVPGRQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARC  233 (446)
T ss_dssp             EEEEEEECTTSCHHHHHHHHCCT--T------TCEEEESCHHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCC
T ss_pred             cEEEEEcCCCCCHHHHHHHHhcc--C------CeEEEeCCHHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCC
Confidence            68899999999999998776632  1      22222111000000000000            0122233221      


Q ss_pred             CCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          301 PYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       301 p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      ++.+|++||+-.+|+..+..++..+...
T Consensus       234 ~~d~liiDE~sm~~~~~l~~l~~~~~~~  261 (446)
T 3vkw_A          234 QFKRLFIDEGLMLHTGCVNFLVEMSLCD  261 (446)
T ss_dssp             CCSEEEEETGGGSCHHHHHHHHHHTTCS
T ss_pred             cCCEEEEeCcccCCHHHHHHHHHhCCCC
Confidence            2689999999999999999888776543

>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20

Probab=95.47  E-value=0.027  Score=46.27  Aligned_cols=66  Identities=15%  Similarity=0.194  Sum_probs=52.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccCCCc--cccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc--hhhHHHHHh
Q 036633          396 VPLLDTTRLLLREWACEETKRRNNDSKAV--IVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ--RPSADHVID  466 (550)
Q Consensus       396 ~pL~~e~i~~I~~~~l~~~~~~l~~~~~~--~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~--~~la~~~l~  466 (550)
                      +.++.++...|+.++|  +...+..+|+-  .+.++++++..|.. .| .+.|.  |.|++.|..  ...+..++.
T Consensus         1 sGYt~~EK~~IAk~~L--iPkql~~~GL~~~~~~i~d~al~~iI~-~YTREaGV--RnLer~i~~i~RK~a~~i~~   71 (94)
T 1qzm_A            1 SGYTEDEKLNIAKRHL--LPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGV--RGLEREISKLCRKAVKQLLL   71 (94)
T ss_dssp             CCCCHHHHHHHHHHTH--HHHHHHHTTCCTTTEEECHHHHHHHHH-HHCCCSSS--HHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhc--cHHHHHHhCCChhhceECHHHHHHHHH-Hhcccccc--hHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999999  55555555552  58999999999998 45 77898  999999998  556666553

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.46  E-value=0.0093  Score=58.10  Aligned_cols=25  Identities=36%  Similarity=0.575  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||++++.||+.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5889999999999999999998873

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.45  E-value=0.012  Score=53.21  Aligned_cols=24  Identities=17%  Similarity=0.338  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.|.||+|+|||++.+.|+..+
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            588999999999999999999998

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.44  E-value=0.0084  Score=56.36  Aligned_cols=24  Identities=17%  Similarity=0.592  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.|+||+|+|||+++++|+..+
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            588999999999999999999876

>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1

Probab=95.42  E-value=0.058  Score=63.92  Aligned_cols=39  Identities=28%  Similarity=0.312  Sum_probs=28.7

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHH
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      .|..|+..+...+...           +|...+++||+|+|||++|-..+
T Consensus       607 ~Q~~ai~~il~~~~~g-----------~p~d~ll~~~TGsGKT~val~aa  645 (1151)
T 2eyq_A          607 DQAQAINAVLSDMCQP-----------LAMDRLVCGDVGFGKTEVAMRAA  645 (1151)
T ss_dssp             HHHHHHHHHHHHHHSS-----------SCCEEEEECCCCTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-----------CcCcEEEECCCCCCHHHHHHHHH
Confidence            4666776666655543           56689999999999999876444

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=95.39  E-value=0.029  Score=68.23  Aligned_cols=72  Identities=15%  Similarity=0.197  Sum_probs=49.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-------------------HHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-------------------SLAALVKK  299 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-------------------~lt~al~~  299 (550)
                      ..++++||||+|||++|..+|..+..   ...+++.+++.+-.+... +.-+|                   .+...++.
T Consensus       733 ~lVlI~G~PG~GKTtLal~lA~~aa~---~g~~VlyiS~Ees~~ql~-A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~  808 (1706)
T 3cmw_A          733 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARS  808 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCcHHHHHHHHHHHHH---cCCCeEEEeccchHHHHH-HHHcCCChhheEEecCCcHHHHHHHHHHHHHc
Confidence            68999999999999999999888765   444667777655443221 22122                   22223345


Q ss_pred             CCCCeEEeccccccC
Q 036633          300 RPYSVVLFDKIEKAN  314 (550)
Q Consensus       300 ~p~~VlllDEIeka~  314 (550)
                      ...++|++|.+.-+.
T Consensus       809 ~~~~lVVIDsLq~l~  823 (1706)
T 3cmw_A          809 GAVDVIVVDSVAALT  823 (1706)
T ss_dssp             TCCSEEEESCSTTCC
T ss_pred             cCCCEEEEechhhhc
Confidence            566899999998776

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=95.38  E-value=0.038  Score=53.12  Aligned_cols=79  Identities=13%  Similarity=0.103  Sum_probs=41.8

Q ss_pred             eeEEEeccCCCcHHHHH-HHHHHHhccCCCCCCceeEEe--cC-CCCchhhhhhHHh------------HHHHHHHhCCC
Q 036633          239 GLFLFAGPNCSGKAELA-KAIANELYDNNDNDNHLIHFD--MG-NYTELESIKHFFD------------SLAALVKKRPY  302 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lA-k~la~~l~~~~~~~~~li~id--~s-~~~~~~~~s~liG------------~lt~al~~~p~  302 (550)
                      ...+++||.|.|||+.+ +.+.++...    ....+-+.  .. .|. ....+++ |            .+.+.+  .++
T Consensus        20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~----g~kvli~kp~~D~Ryg-~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~   91 (234)
T 2orv_A           20 QIQVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYAKDTRYS-SSFCTHD-RNTMEALPACLLRDVAQEA--LGV   91 (234)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTT----TCCEEEEEETTCCCC-------------CEEEEESSGGGGHHHH--TTC
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHC----CCeEEEEeecCCccch-HHHHhhc-CCeeEEEecCCHHHHHHHh--ccC
Confidence            56789999999999655 444444433    22333222  11 122 1122222 3            122222  567


Q ss_pred             CeEEeccccccCHHHHHHHHHhhhh
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKT  327 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~  327 (550)
                      .+|++||+.-+..  ...+.+.+++
T Consensus        92 dvViIDEaQF~~~--v~el~~~l~~  114 (234)
T 2orv_A           92 AVIGIDEGQFFPD--IVEFCEAMAN  114 (234)
T ss_dssp             SEEEESSGGGCTT--HHHHHHHHHH
T ss_pred             CEEEEEchhhhhh--HHHHHHHHHh
Confidence            8999999999974  4444555544

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.36  E-value=0.0083  Score=57.10  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=22.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.|+||+|+|||++++.|+..+
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            578899999999999999999876

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.34  E-value=0.0098  Score=57.11  Aligned_cols=28  Identities=32%  Similarity=0.411  Sum_probs=24.3

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .++..+.|.||+|+|||++++.|++.+.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg   41 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFG   41 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3446889999999999999999999873

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=95.34  E-value=0.035  Score=60.67  Aligned_cols=43  Identities=21%  Similarity=0.152  Sum_probs=33.2

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -|..|+..+...+...            ...+++++|||+|||.+|-.++..+..
T Consensus       182 ~Q~~ai~~~~~~~~~~------------~~~~ll~~~TGsGKT~~~~~~~~~l~~  224 (590)
T 3h1t_A          182 YQQIAINRAVQSVLQG------------KKRSLITMATGTGKTVVAFQISWKLWS  224 (590)
T ss_dssp             HHHHHHHHHHHHHHTT------------CSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC------------CCceEEEecCCCChHHHHHHHHHHHHh
Confidence            3888888887777643            136789999999999998888776643

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.32  E-value=0.0085  Score=56.55  Aligned_cols=27  Identities=33%  Similarity=0.445  Sum_probs=23.6

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |..+.+.||+|+|||++++.|++.++-
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~   29 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSM   29 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            457899999999999999999998743

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.25  E-value=0.0059  Score=57.26  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=22.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .+.|.||+|+|||++++.|++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999998853

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=95.23  E-value=0.049  Score=60.48  Aligned_cols=70  Identities=13%  Similarity=0.127  Sum_probs=40.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL  318 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~  318 (550)
                      ...|+.||||||||+++-.+...+..   ...++...-.+    +.++..    +.+.+......++=+-...+.++.+.
T Consensus       206 ~~~lI~GPPGTGKT~ti~~~I~~l~~---~~~~ILv~a~T----N~AvD~----i~erL~~~~~~ilRlG~~~r~~~~~~  274 (646)
T 4b3f_X          206 ELAIIHGPPGTGKTTTVVEIILQAVK---QGLKVLCCAPS----NIAVDN----LVERLALCKQRILRLGHPARLLESIQ  274 (646)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESS----HHHHHH----HHHHHHHTTCCEEECSCCSSCCHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEcCc----hHHHHH----HHHHHHhcCCceEEecchhhhhhhhh
Confidence            37799999999999866555444444   33344333322    223333    34444555556666666566666554


Q ss_pred             H
Q 036633          319 N  319 (550)
Q Consensus       319 ~  319 (550)
                      .
T Consensus       275 ~  275 (646)
T 4b3f_X          275 Q  275 (646)
T ss_dssp             T
T ss_pred             h
Confidence            3

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.22  E-value=0.012  Score=53.51  Aligned_cols=19  Identities=37%  Similarity=0.590  Sum_probs=17.7

Q ss_pred             eeEEEeccCCCcHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKA  257 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~  257 (550)
                      ..+.++||||+|||+++++
T Consensus        10 ei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A           10 SLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEEECCTTSCHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHH
Confidence            6889999999999999994

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=95.15  E-value=0.015  Score=55.43  Aligned_cols=84  Identities=17%  Similarity=0.292  Sum_probs=49.9

Q ss_pred             eeEEEeccCCCcHHH-HHHHHHHHhccCCCCCCceeEEec---CCCCchhhhhhHHh------------HHHHHHHhCCC
Q 036633          239 GLFLFAGPNCSGKAE-LAKAIANELYDNNDNDNHLIHFDM---GNYTELESIKHFFD------------SLAALVKKRPY  302 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~-lAk~la~~l~~~~~~~~~li~id~---s~~~~~~~~s~liG------------~lt~al~~~p~  302 (550)
                      ...+++||.|+|||+ +.+.+.++...   . ...+-+..   ..|.+..-.|+ +|            .+.+.+ ..+.
T Consensus        29 ~I~vitG~M~sGKTT~Llr~~~r~~~~---g-~kvli~kp~~D~R~~~~~I~Sr-~G~~~~a~~v~~~~di~~~i-~~~~  102 (219)
T 3e2i_A           29 WIECITGSMFSGKSEELIRRLRRGIYA---K-QKVVVFKPAIDDRYHKEKVVSH-NGNAIEAINISKASEIMTHD-LTNV  102 (219)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHT---T-CCEEEEEEC-----------CB-TTBCCEEEEESSGGGGGGSC-CTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc---C-CceEEEEeccCCcchhhhHHHh-cCCceeeEEeCCHHHHHHHH-hcCC
Confidence            677899999999999 55666555543   2 22333321   11211111111 22            111112 2356


Q ss_pred             CeEEeccccccCHHHHHHHHHhhhhc
Q 036633          303 SVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       303 ~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .+|++||+.-+++++.+.+..+.+.|
T Consensus       103 dvV~IDEaQFf~~~~v~~l~~la~~g  128 (219)
T 3e2i_A          103 DVIGIDEVQFFDDEIVSIVEKLSADG  128 (219)
T ss_dssp             SEEEECCGGGSCTHHHHHHHHHHHTT
T ss_pred             CEEEEechhcCCHHHHHHHHHHHHCC
Confidence            79999999999999999998888777

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=95.15  E-value=0.03  Score=56.55  Aligned_cols=74  Identities=18%  Similarity=0.246  Sum_probs=45.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh---------------HH----HHH---
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD---------------SL----AAL---  296 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG---------------~l----t~a---  296 (550)
                      +..+++||||+|||+||-.++......+ .....+.+|..+-..... .+-+|               .+    .+.   
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~~~r-a~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~  106 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGITPAY-LRSMGVDPERVIHTPVQSLEQLRIDMVNQLDA  106 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCCHHH-HHHTTCCGGGEEEEECSBHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhhHHH-HHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHH
Confidence            5789999999999999887766553300 134677777655333221 12223               22    222   


Q ss_pred             HHhCCCCeEEeccccccC
Q 036633          297 VKKRPYSVVLFDKIEKAN  314 (550)
Q Consensus       297 l~~~p~~VlllDEIeka~  314 (550)
                      ++.....+|++|=|.-+.
T Consensus       107 i~~~~~~lvVIDSI~aL~  124 (333)
T 3io5_A          107 IERGEKVVVFIDSLGNLA  124 (333)
T ss_dssp             CCTTCCEEEEEECSTTCB
T ss_pred             hhccCceEEEEecccccc
Confidence            244455899999887653

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=95.15  E-value=0.012  Score=56.32  Aligned_cols=25  Identities=24%  Similarity=0.480  Sum_probs=22.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|.++|+..+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCC
Confidence            5889999999999999999998763

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.12  E-value=0.011  Score=58.63  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++|.||||+|||++|+.|++.+
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhC
Confidence            478999999999999999999864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.12  E-value=0.016  Score=55.67  Aligned_cols=27  Identities=26%  Similarity=0.481  Sum_probs=24.0

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ++..+.|.||||+|||++++.|++.+.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            336788999999999999999999985

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.12  E-value=0.028  Score=56.59  Aligned_cols=23  Identities=26%  Similarity=0.299  Sum_probs=21.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++++||||+|||++|..++..
T Consensus        99 ~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           99 SVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            68899999999999999999875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.08  E-value=0.015  Score=58.76  Aligned_cols=28  Identities=21%  Similarity=0.156  Sum_probs=24.7

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++..+.++||+|+||||+++.|+..+..
T Consensus        89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           89 VPFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence            3378899999999999999999998854

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.05  E-value=0.013  Score=56.55  Aligned_cols=25  Identities=28%  Similarity=0.270  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+||||+++.|+..+.
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            6889999999999999999999874

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.05  E-value=0.033  Score=52.31  Aligned_cols=27  Identities=19%  Similarity=0.103  Sum_probs=24.0

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +..++|+|++|+|||+++..++..++.
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~   56 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGN   56 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            368999999999999999999988754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.04  E-value=0.014  Score=53.23  Aligned_cols=27  Identities=33%  Similarity=0.384  Sum_probs=24.6

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |+..+|+||+|+|||+++++|+-.+++
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence            468899999999999999999998876

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.02  E-value=0.0095  Score=56.06  Aligned_cols=24  Identities=25%  Similarity=0.194  Sum_probs=21.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++|+||||+|||++|..|++..
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999999864

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=95.01  E-value=0.048  Score=65.39  Aligned_cols=26  Identities=12%  Similarity=0.125  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+++++|...+..
T Consensus       417 ~~~~ivG~sGsGKSTl~~ll~g~~~~  442 (1284)
T 3g5u_A          417 QTVALVGNSGCGKSTTVQLMQRLYDP  442 (1284)
T ss_dssp             CEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            46789999999999999999987643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.01  E-value=0.054  Score=65.11  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .+-++||||+|||+++++|.+.+..
T Consensus      1107 ~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp             EEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhcCccC
Confidence            4689999999999999999987754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=94.99  E-value=0.03  Score=67.27  Aligned_cols=26  Identities=12%  Similarity=0.129  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|...+..
T Consensus       445 ~~vaivG~sGsGKSTll~ll~~~~~~  470 (1321)
T 4f4c_A          445 QTVALVGSSGCGKSTIISLLLRYYDV  470 (1321)
T ss_dssp             CEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred             cEEEEEecCCCcHHHHHHHhcccccc
Confidence            35689999999999999999987654

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.97  E-value=0.038  Score=52.64  Aligned_cols=37  Identities=14%  Similarity=0.195  Sum_probs=26.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH-hccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE-LYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~-l~~~~~~~~~li~id~s  278 (550)
                      ..++++|+||+|||++|..++.. ...   ...+.+.+++.
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~---~~~~v~~~s~E   68 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIYKGAEE---YGEPGVFVTLE   68 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHH---HCCCEEEEESS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHh---cCCCceeeccc
Confidence            58899999999999999887654 222   23355555544

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.95  E-value=0.12  Score=54.52  Aligned_cols=38  Identities=18%  Similarity=0.178  Sum_probs=29.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      ..++++||||+|||++|..+|...-..  ...+.+.+++.
T Consensus       201 ~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE  238 (444)
T 2q6t_A          201 SLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE  238 (444)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC
Confidence            688999999999999999998876430  23467777654

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=94.92  E-value=0.011  Score=54.84  Aligned_cols=32  Identities=22%  Similarity=0.343  Sum_probs=25.5

Q ss_pred             EEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          241 FLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      ++++|++|+|||++|..++.. ..      +.+.++-+.
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~------~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-AP------QVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CS------SEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CC------CeEEEecCC
Confidence            689999999999999999966 33      566666544

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=94.89  E-value=0.0085  Score=57.27  Aligned_cols=24  Identities=17%  Similarity=0.422  Sum_probs=15.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHH-HHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIA-NEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la-~~l  262 (550)
                      ..+.|+||+|+|||++++.|+ ..+
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCC
Confidence            578899999999999999999 764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=94.89  E-value=0.025  Score=51.77  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=23.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|+|++|+|||+++..|+..+..
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~   30 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVR   30 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence            58899999999999999999998754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.88  E-value=0.023  Score=56.34  Aligned_cols=36  Identities=8%  Similarity=0.024  Sum_probs=28.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCC-ceeEEec
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDN-HLIHFDM  277 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~-~li~id~  277 (550)
                      ..++++||||+|||++++.|+..+..   ... +++.++.
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~~~~~---~~G~~v~~~~~   72 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQALQWGT---AMGKKVGLAML   72 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHH---TSCCCEEEEES
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHH---HcCCeEEEEeC
Confidence            58899999999999999999988765   322 5555554

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=94.80  E-value=0.017  Score=62.58  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=24.7

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .|..++|+|.||+|||++|+.|++.+.-
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~   61 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNW   61 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4468899999999999999999998843

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.72  E-value=0.017  Score=53.92  Aligned_cols=24  Identities=25%  Similarity=0.390  Sum_probs=21.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .+.|+||+|+|||++++.|+..+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhcc
Confidence            578999999999999999999873

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=94.70  E-value=0.025  Score=62.32  Aligned_cols=37  Identities=16%  Similarity=0.152  Sum_probs=29.5

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      +|..++|.|+||+|||++|+.|++.+..   ...+++.+|
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~---~G~~~v~lD   87 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLD   87 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEES
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEec
Confidence            4578999999999999999999999843   222666665

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.68  E-value=0.17  Score=55.58  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=23.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.|+||+|+||||+.++|+-.+..
T Consensus       104 ei~~LvGpNGaGKSTLLkiL~Gll~P  129 (608)
T 3j16_B          104 QVLGLVGTNGIGKSTALKILAGKQKP  129 (608)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            68999999999999999999987643

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=94.67  E-value=0.11  Score=54.84  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=29.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      ..+++.|+||+|||++|..+|...-.   ...+.+.+.+.+
T Consensus       198 ~liiIaG~pG~GKTtlal~ia~~~a~---~g~~vl~fSlEm  235 (444)
T 3bgw_A          198 NFVLIAARPSMGKTAFALKQAKNMSD---NDDVVNLHSLEM  235 (444)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHHH---TTCEEEEECSSS
T ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHH---cCCEEEEEECCC
Confidence            68899999999999999999887755   334666666543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.57  E-value=0.033  Score=54.79  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++||||+|||+++..++..+.
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            6889999999999999999997653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.50  E-value=0.022  Score=57.31  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=23.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|+||+|+|||+|+++|+..+.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl~~G  152 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHFLGG  152 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCcHHHHHHHHhhhcCc
Confidence            68899999999999999999999844

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=94.39  E-value=0.078  Score=56.30  Aligned_cols=25  Identities=20%  Similarity=0.274  Sum_probs=22.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++|+||||||||+|+..|+....
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCccHHHHHHHhhhh
Confidence            5789999999999999999987654

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=94.33  E-value=0.039  Score=60.37  Aligned_cols=38  Identities=21%  Similarity=0.144  Sum_probs=29.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCC-CceeEEec
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDND-NHLIHFDM  277 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~-~~li~id~  277 (550)
                      +|..++|.|+||+|||++|+.|++.++.   .. .+++.+|.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~---~G~~~~~~lD~  433 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQ---QGGRSVSLLLG  433 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH---HCSSCEEEEEH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcc---cCCceEEEECc
Confidence            4478899999999999999999999873   11 26667763

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=94.30  E-value=0.026  Score=54.27  Aligned_cols=27  Identities=15%  Similarity=0.204  Sum_probs=23.9

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |..+.|.|++|+|||++++.|++.+.+
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~   28 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            457899999999999999999999843

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=94.25  E-value=0.12  Score=56.03  Aligned_cols=26  Identities=27%  Similarity=0.472  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.++||+|+|||+++++|+..+..
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~Gl~~p  320 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVGEITA  320 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            57889999999999999999987643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=94.21  E-value=0.11  Score=62.42  Aligned_cols=25  Identities=12%  Similarity=0.215  Sum_probs=22.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -.+.++||+|+|||+++++|+..+.
T Consensus      1060 e~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A         1060 QTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp             SEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4678999999999999999998764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=94.14  E-value=0.03  Score=51.49  Aligned_cols=26  Identities=31%  Similarity=0.369  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|+||+|+|||++++.|...+..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~   32 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCA   32 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence            58899999999999999999988654

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=94.14  E-value=0.12  Score=52.73  Aligned_cols=38  Identities=16%  Similarity=0.290  Sum_probs=29.8

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      .| ..+++.|+||+|||++|..+|..+..   ...+...|++
T Consensus        44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl   82 (338)
T 4a1f_A           44 NKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL   82 (338)
T ss_dssp             CTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC
Confidence            44 68899999999999999999987754   3446666655

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=94.07  E-value=0.035  Score=52.12  Aligned_cols=26  Identities=19%  Similarity=0.072  Sum_probs=24.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++.+.||+|+|||++|+.||+.|+-
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~   32 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNI   32 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence            48899999999999999999999865

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.05  E-value=0.049  Score=54.84  Aligned_cols=37  Identities=24%  Similarity=0.322  Sum_probs=29.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      ..++++|+||+|||++|..+|.....   ...+.+.+++.
T Consensus        69 ~l~li~G~pG~GKTtl~l~ia~~~a~---~g~~vl~~slE  105 (315)
T 3bh0_A           69 NFVLIAARPSMGKTAFALKQAKNMSD---NDDVVNLHSLE  105 (315)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHT---TTCEEEEEESS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEECC
Confidence            68899999999999999999976654   33567777654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=94.04  E-value=0.025  Score=54.60  Aligned_cols=26  Identities=23%  Similarity=0.262  Sum_probs=22.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+|.++|+..+..
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl~~p   57 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCLDKP   57 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            58899999999999999999976643

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=94.04  E-value=0.019  Score=52.67  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=23.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .+.++||||+|||++++.|+..+..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~~   28 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILRE   28 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhh
Confidence            6789999999999999999999865

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=93.94  E-value=0.042  Score=59.18  Aligned_cols=26  Identities=8%  Similarity=0.060  Sum_probs=24.3

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +.++.|.|++|+|||++|++||+.|.
T Consensus       395 ~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          395 GFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ceEEEecccCCCCHHHHHHHHHHHHH
Confidence            37899999999999999999999996

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=93.94  E-value=0.33  Score=47.04  Aligned_cols=18  Identities=28%  Similarity=0.074  Sum_probs=15.2

Q ss_pred             eEEEeccCCCcHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKA  257 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~  257 (550)
                      .+++.+|||+|||..+-.
T Consensus        93 ~~lv~a~TGsGKT~~~~l  110 (262)
T 3ly5_A           93 DLLAAAKTGSGKTLAFLI  110 (262)
T ss_dssp             CCEECCCTTSCHHHHHHH
T ss_pred             cEEEEccCCCCchHHHHH
Confidence            689999999999987543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=93.91  E-value=0.025  Score=54.06  Aligned_cols=25  Identities=20%  Similarity=0.127  Sum_probs=22.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+..+.
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5788999999999999999997654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=93.89  E-value=0.035  Score=51.13  Aligned_cols=26  Identities=15%  Similarity=0.271  Sum_probs=22.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++++||+|+|||+|.+.++...+.
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCC
Confidence            57899999999999999999986653

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=93.86  E-value=0.42  Score=48.43  Aligned_cols=26  Identities=19%  Similarity=0.083  Sum_probs=23.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|+||||+|||++.++|+..+..
T Consensus        56 ~~v~i~G~~GaGKSTLl~~l~g~~~~   81 (337)
T 2qm8_A           56 IRVGITGVPGVGKSTTIDALGSLLTA   81 (337)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            68899999999999999999988753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=93.84  E-value=0.044  Score=49.03  Aligned_cols=25  Identities=24%  Similarity=0.258  Sum_probs=21.7

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHH
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ++..++++|++|+|||++...+...
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4478999999999999999998754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.80  E-value=0.038  Score=50.40  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=21.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++++|++|+|||++...+...-
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            789999999999999999998654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=93.79  E-value=0.032  Score=54.05  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.+.||+|+|||+|.++|+..+..
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~~p   50 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            57889999999999999999987643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=93.74  E-value=0.03  Score=54.04  Aligned_cols=25  Identities=28%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|.++|+..+.
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5789999999999999999998764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=93.74  E-value=0.043  Score=48.91  Aligned_cols=27  Identities=44%  Similarity=0.511  Sum_probs=24.5

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |+..+++||+|+|||++..+|.-.+++
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l~g   49 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGLYW   49 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence            478899999999999999999988876

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=93.70  E-value=0.03  Score=54.89  Aligned_cols=26  Identities=19%  Similarity=0.208  Sum_probs=22.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.+.||+|+|||+|.++|+..+..
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl~~p   58 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFLEKP   58 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57889999999999999999977643

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=93.68  E-value=0.35  Score=48.26  Aligned_cols=89  Identities=12%  Similarity=0.158  Sum_probs=51.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccC-----C-----------CC-CCceeEEecCCCCchh---hhh-hHHhHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDN-----N-----------DN-DNHLIHFDMGNYTELE---SIK-HFFDSLAALV  297 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~-----~-----------~~-~~~li~id~s~~~~~~---~~s-~liG~lt~al  297 (550)
                      +-+.++|+||+|||+|..+|...-+..     +           .. ...++-+|...+....   ... .+.......+
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l   90 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL   90 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence            999999999999999999887543210     0           01 3345556766654322   111 1111333444


Q ss_pred             HhCCCCeEEeccccccCHHHHHHHHHhhhh
Q 036633          298 KKRPYSVVLFDKIEKANSSILNLLLKILKT  327 (550)
Q Consensus       298 ~~~p~~VlllDEIeka~~~v~~~Ll~~ld~  327 (550)
                      +..-.-++++|=-+...+.-...+++.+..
T Consensus        91 ~~aD~il~VvD~~~~~~~~~~~~~~~~l~~  120 (308)
T 3iev_A           91 EEADVILFMIDATEGWRPRDEEIYQNFIKP  120 (308)
T ss_dssp             HHCSEEEEEEETTTBSCHHHHHHHHHHTGG
T ss_pred             hcCCEEEEEEeCCCCCCchhHHHHHHHHHh
Confidence            554444666776566666666654655544

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=93.64  E-value=0.037  Score=54.55  Aligned_cols=25  Identities=16%  Similarity=0.266  Sum_probs=22.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++.++||+|+|||++.++|+.....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~   28 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVS   28 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            6789999999999999999988754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=93.64  E-value=0.027  Score=53.30  Aligned_cols=23  Identities=39%  Similarity=0.384  Sum_probs=21.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..+.++||+|+|||+|.++|+..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47889999999999999999987

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=93.63  E-value=0.17  Score=53.13  Aligned_cols=17  Identities=18%  Similarity=0.118  Sum_probs=15.2

Q ss_pred             eeEEEeccCCCcHHHHH
Q 036633          239 GLFLFAGPNCSGKAELA  255 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lA  255 (550)
                      .++++.||||+|||..+
T Consensus         3 ~~~lv~a~TGsGKT~~~   19 (431)
T 2v6i_A            3 ELTVLDLHPGAGKTRRV   19 (431)
T ss_dssp             CEEEEECCTTSCTTTTH
T ss_pred             CEEEEEcCCCCCHHHHH
Confidence            37899999999999976

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=93.57  E-value=0.019  Score=55.96  Aligned_cols=27  Identities=11%  Similarity=0.181  Sum_probs=23.8

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +|..+.|.|++|+|||++|+.|++.+.
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            446789999999999999999999873

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=93.56  E-value=0.069  Score=50.64  Aligned_cols=26  Identities=23%  Similarity=0.379  Sum_probs=23.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|.||+|+|||++++.|++.+..
T Consensus         7 ~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            7 LFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            57789999999999999999999865

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=93.54  E-value=0.045  Score=49.01  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=21.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++...+...-+
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~~~   33 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVNDKY   33 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCcC
Confidence            7899999999999999998876543

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=93.52  E-value=0.043  Score=59.71  Aligned_cols=26  Identities=35%  Similarity=0.534  Sum_probs=24.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++.|+||+|+|||+++++|+..+..
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~L~~  395 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAARLME  395 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCChHHHHHHHHHHhhcc
Confidence            68899999999999999999999864

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.48  E-value=0.14  Score=48.09  Aligned_cols=27  Identities=33%  Similarity=0.423  Sum_probs=24.3

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +..++++|++|||||+++..++..++.
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~   64 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLKD   64 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            368899999999999999999998876

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=93.46  E-value=0.04  Score=50.65  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=20.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++|.||||+|||++|..+.+.
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            47899999999999999999874

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=93.44  E-value=0.21  Score=57.68  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      ..++++||+|+|||++.++++-
T Consensus       663 ~i~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          663 MFHIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999954

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=93.44  E-value=0.037  Score=53.54  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+|.++|+..+..
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~p   54 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFYQP   54 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57889999999999999999977643

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=93.41  E-value=1.4  Score=45.11  Aligned_cols=40  Identities=13%  Similarity=0.167  Sum_probs=31.1

Q ss_pred             CeeEEEe-ccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          238 LGLFLFA-GPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       238 p~~lLf~-Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +.++.++ |-.|||||++|-.+|..+..   ...+.+-+|+...
T Consensus       143 ~kvIav~s~KGGvGKTT~a~nLA~~La~---~g~rVlliD~D~~  183 (373)
T 3fkq_A          143 SSVVIFTSPCGGVGTSTVAAACAIAHAN---MGKKVFYLNIEQC  183 (373)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHH---HTCCEEEEECCTT
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHHHHh---CCCCEEEEECCCC
Confidence            3566665 58899999999999998866   4558889998833

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=93.40  E-value=0.043  Score=53.95  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.++||+|+|||+|.++|+..+
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl~   70 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGRE   70 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            588999999999999999999763

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=93.34  E-value=0.038  Score=54.27  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+|.++|+..+..
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl~~p   76 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLLEDF   76 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcCCCC
Confidence            58899999999999999999977643

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=93.33  E-value=0.044  Score=53.30  Aligned_cols=23  Identities=35%  Similarity=0.640  Sum_probs=21.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..+.+.||+|+|||+|.++|+..
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57889999999999999999975

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=93.32  E-value=0.18  Score=51.14  Aligned_cols=27  Identities=19%  Similarity=0.126  Sum_probs=23.7

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +..+.++|+||+|||+++..|+..+..
T Consensus        56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~   82 (341)
T 2p67_A           56 TLRLGVTGTPGAGKSTFLEAFGMLLIR   82 (341)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            368899999999999999999987753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=93.29  E-value=0.035  Score=54.26  Aligned_cols=25  Identities=40%  Similarity=0.534  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|.++|+..+.
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5788999999999999999997664

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=93.29  E-value=0.14  Score=53.01  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=23.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++++||||+|||++++.|++.+..
T Consensus       175 Qr~~IvG~sG~GKTtLl~~Iar~i~~  200 (422)
T 3ice_A          175 QRGLIVAPPKAGKTMLLQNIAQSIAY  200 (422)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCChhHHHHHHHHHHhh
Confidence            68899999999999999999998743

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=93.26  E-value=0.059  Score=51.57  Aligned_cols=27  Identities=26%  Similarity=0.288  Sum_probs=23.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ++..+.|.|++|+|||++++.|++.+.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            346788999999999999999999874

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=93.26  E-value=0.057  Score=51.94  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+-|.||||+|||++|+.|++.+.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhC
Confidence            5678999999999999999999873

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=93.24  E-value=0.052  Score=52.45  Aligned_cols=26  Identities=15%  Similarity=0.342  Sum_probs=24.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|.||+|+|||++++.|++.+..
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~~   53 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQQ   53 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            67889999999999999999999865

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=93.23  E-value=0.051  Score=50.75  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++|+|++|+|||++...+....+.
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~~~   38 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDSVR   38 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            78999999999999999999876544

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=93.22  E-value=0.045  Score=48.90  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++++|++|+|||++...+...-
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            678999999999999999987543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=93.17  E-value=0.038  Score=52.56  Aligned_cols=25  Identities=40%  Similarity=0.553  Sum_probs=22.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+..+.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5788999999999999999997653

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=93.17  E-value=0.064  Score=47.91  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=22.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++.+.+...-+
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~~~   34 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQSYF   34 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcC
Confidence            7899999999999999999987543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=93.16  E-value=0.041  Score=53.16  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=22.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+..+.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5788999999999999999997664

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=93.16  E-value=0.042  Score=54.17  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+|.++|+..+..
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl~~p   71 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNLYQP   71 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57889999999999999999987643

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=93.16  E-value=0.047  Score=50.37  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=22.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++||+|+|||+|.+.+....+
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~~   30 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNEF   30 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCCC
Confidence            5789999999999999999997654

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=93.15  E-value=0.046  Score=56.13  Aligned_cols=26  Identities=23%  Similarity=0.279  Sum_probs=23.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+|++.|+..+..
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            57899999999999999999998744

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=93.14  E-value=0.043  Score=53.76  Aligned_cols=24  Identities=25%  Similarity=0.264  Sum_probs=21.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.++||+|+|||+|.++|+..+
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            588999999999999999999754

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=93.13  E-value=0.085  Score=57.34  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=28.7

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      +..++|+|++|+|||++|+.|++.+..   ...++..+|
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~~---~G~~~~~ld  407 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQA---RGRKVTLLD  407 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEC
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhhh---cCCeEEEEC
Confidence            468899999999999999999998865   233455555

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=93.08  E-value=0.059  Score=48.83  Aligned_cols=22  Identities=18%  Similarity=0.221  Sum_probs=20.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      ..++|+|++|+|||+|.+.+..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            6899999999999999999985

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=93.02  E-value=0.045  Score=53.74  Aligned_cols=25  Identities=32%  Similarity=0.403  Sum_probs=22.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|.++|+..+.
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            5788999999999999999997664

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=93.01  E-value=0.041  Score=52.76  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=22.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|.++|+..+.
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc
Confidence            5788999999999999999998764

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=92.98  E-value=0.045  Score=53.27  Aligned_cols=26  Identities=27%  Similarity=0.438  Sum_probs=22.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.+.||+|+|||+|.++|+..+..
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~~p   52 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMTSG   52 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            57889999999999999999977643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=92.94  E-value=0.066  Score=56.08  Aligned_cols=25  Identities=16%  Similarity=0.135  Sum_probs=22.4

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHh
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ++.+.|+||+|+|||++.++|+...
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCC
Confidence            3789999999999999999999754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=92.93  E-value=0.059  Score=47.50  Aligned_cols=25  Identities=12%  Similarity=0.325  Sum_probs=21.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++.+.+...-+
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~~~   30 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKGIF   30 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCCC
Confidence            6789999999999999999986543

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=92.92  E-value=0.053  Score=52.07  Aligned_cols=26  Identities=19%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|.||+|+|||++++.|++.+..
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~~~l~~   51 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFCDRLQE   51 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            57889999999999999999999854

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=92.91  E-value=0.042  Score=54.41  Aligned_cols=26  Identities=19%  Similarity=0.230  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+|.++|+..+..
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl~~p   73 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAYEPA   73 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            57889999999999999999977643

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=92.87  E-value=0.27  Score=56.60  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++++||+|+|||++.++++-.
T Consensus       674 ~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          674 RVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCchHHHHHHHHHH
Confidence            47899999999999999998754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=92.83  E-value=0.059  Score=48.09  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++++|++|+|||+|.+.+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999753

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=92.81  E-value=0.08  Score=54.76  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=30.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      ++++++||||+|||++++.+...+..   ....++.+|..
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~~~~~~~---~~~~~~~~D~~   72 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKMLLLREYM---QGSRVIIIDPE   72 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEESS
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHHH---CCCEEEEEeCC
Confidence            68999999999999999999887765   44566777753

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=92.81  E-value=0.068  Score=50.13  Aligned_cols=27  Identities=44%  Similarity=0.511  Sum_probs=24.9

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |+..+++||+|+|||++..+|.-.+++
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            478899999999999999999988887

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=92.76  E-value=0.077  Score=58.66  Aligned_cols=24  Identities=33%  Similarity=0.448  Sum_probs=20.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++.||||||||+++..+...+.
T Consensus       197 ~~li~GppGTGKT~~~~~~i~~l~  220 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATIVYHLA  220 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHH
Confidence            678999999999998877776654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=92.74  E-value=0.058  Score=48.17  Aligned_cols=24  Identities=17%  Similarity=0.183  Sum_probs=21.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++++|++|+|||++...+...-
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            789999999999999999987543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=92.74  E-value=0.047  Score=49.70  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=19.2

Q ss_pred             eEEEeccCCCcHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      .++++|++|||||+|.+.++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999875

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=92.73  E-value=0.073  Score=50.67  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=23.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|.||+|+|||+.++.|++.+..
T Consensus         6 ~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            6 KLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            57889999999999999999999853

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=92.69  E-value=0.071  Score=46.70  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=19.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      .++++|++|+|||++...+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999864

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=92.69  E-value=0.2  Score=49.24  Aligned_cols=39  Identities=13%  Similarity=0.106  Sum_probs=32.0

Q ss_pred             eeEEEecc-CCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          239 GLFLFAGP-NCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       239 ~~lLf~Gp-~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .+++|+|+ +|+|||++|-.||..+-.   .....+-+|+...
T Consensus        83 kvI~vts~kgG~GKTt~a~nLA~~lA~---~G~rVLLID~D~~  122 (271)
T 3bfv_A           83 QSIVITSEAPGAGKSTIAANLAVAYAQ---AGYKTLIVDGDMR  122 (271)
T ss_dssp             CEEEEECSSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCSS
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHh---CCCeEEEEeCCCC
Confidence            68888877 799999999999998876   5567888887643

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=92.66  E-value=0.052  Score=52.94  Aligned_cols=26  Identities=19%  Similarity=0.242  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.+.||+|+|||+|.++|+..+..
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~~p   57 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIHRP   57 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            57889999999999999999987643

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=92.60  E-value=0.078  Score=50.69  Aligned_cols=26  Identities=23%  Similarity=0.125  Sum_probs=24.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++.+.|++|+|||++|+.||+.+.-
T Consensus        15 ~iI~i~g~~gsGk~~i~~~la~~lg~   40 (223)
T 3hdt_A           15 LIITIEREYGSGGRIVGKKLAEELGI   40 (223)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence            58899999999999999999999855

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.59  E-value=0.072  Score=47.69  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=21.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++...+...-+
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~~   35 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGAF   35 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCC
Confidence            7899999999999999999876543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=92.57  E-value=0.074  Score=48.26  Aligned_cols=25  Identities=32%  Similarity=0.373  Sum_probs=21.4

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHH
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      .++..++++|++|||||++.+.+..
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            3447899999999999999988864

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=92.55  E-value=0.066  Score=47.86  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=19.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      ..++++|++|+|||++...+..
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            7899999999999999988863

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=92.53  E-value=0.091  Score=52.54  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .+.|.||||+|||+|.++|+ .+
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEEECCCCCCHHHHHHHHH-Hh
Confidence            78999999999999999999 54

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=92.52  E-value=0.071  Score=48.43  Aligned_cols=25  Identities=16%  Similarity=0.298  Sum_probs=21.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||+++..+...-+
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~~   46 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNHF   46 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCC
Confidence            6789999999999999999986543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=92.52  E-value=0.071  Score=47.42  Aligned_cols=23  Identities=26%  Similarity=0.283  Sum_probs=20.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++++|++|||||+|.+.+...
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCccHHHHHHHHhcC
Confidence            67999999999999999988643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=92.49  E-value=0.089  Score=47.38  Aligned_cols=28  Identities=14%  Similarity=0.232  Sum_probs=23.2

Q ss_pred             CCC-eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          236 RQL-GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       236 ~~p-~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +.+ ..++|+|++|+|||++...+....+
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~   43 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIF   43 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCC
Confidence            344 7889999999999999999886544

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=92.48  E-value=0.073  Score=46.55  Aligned_cols=25  Identities=16%  Similarity=0.298  Sum_probs=21.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++...+...-+
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~~~   28 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQNHF   28 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcC
Confidence            4689999999999999999986544

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=92.46  E-value=0.08  Score=47.54  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=21.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||+|.+.+...-+
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~~   43 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDEF   43 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC
Confidence            7899999999999999999886443

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=92.44  E-value=0.17  Score=56.32  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=24.7

Q ss_pred             HHHHHHHhCCC--CeEEecccc-ccCHHHHHHHHHhhh
Q 036633          292 SLAALVKKRPY--SVVLFDKIE-KANSSILNLLLKILK  326 (550)
Q Consensus       292 ~lt~al~~~p~--~VlllDEIe-ka~~~v~~~Ll~~ld  326 (550)
                      .+..++-..|.  .++++||-- -+++.....+++++.
T Consensus       553 ~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~  590 (670)
T 3ux8_A          553 KLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLH  590 (670)
T ss_dssp             HHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            66777777664  599999975 457766666666654

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=92.44  E-value=0.16  Score=52.51  Aligned_cols=35  Identities=17%  Similarity=0.298  Sum_probs=29.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      .+++.|..|||||++|-.+|..+..   .....+-+|+
T Consensus         4 i~~~~gkGG~GKTt~a~~la~~la~---~g~~vllvd~   38 (374)
T 3igf_A            4 ILTFLGKSGVARTKIAIAAAKLLAS---QGKRVLLAGL   38 (374)
T ss_dssp             EEEEECSBHHHHHHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHH---CCCCeEEEeC
Confidence            6789999999999999999998876   5556777777

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=92.39  E-value=0.057  Score=53.00  Aligned_cols=24  Identities=42%  Similarity=0.596  Sum_probs=22.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.+.||+|+|||+|.++|+..+
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999999876

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=92.35  E-value=0.079  Score=46.44  Aligned_cols=25  Identities=16%  Similarity=0.232  Sum_probs=21.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++...+...-+
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~~~~   28 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVTGTF   28 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCC
Confidence            5789999999999999998876543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=92.32  E-value=0.07  Score=55.47  Aligned_cols=24  Identities=29%  Similarity=0.239  Sum_probs=21.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.|+||+|+|||++.++|+..+
T Consensus        48 e~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            588999999999999999999765

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=92.28  E-value=0.085  Score=48.55  Aligned_cols=25  Identities=20%  Similarity=0.294  Sum_probs=21.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||+|...+...-+
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~~   33 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKKF   33 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCC
Confidence            7899999999999999999876543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=92.27  E-value=0.051  Score=51.88  Aligned_cols=23  Identities=22%  Similarity=0.146  Sum_probs=21.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..+.|.||+|+|||++++.|+..
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            67889999999999999999986

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.26  E-value=0.067  Score=48.12  Aligned_cols=24  Identities=17%  Similarity=0.205  Sum_probs=20.6

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHH
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      .++..++++|++|+|||++...+.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            344899999999999999998775

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=92.20  E-value=0.1  Score=47.12  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=21.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||+|...+...-+
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~~~   36 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDGKF   36 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC
Confidence            7899999999999999999986443

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=92.19  E-value=0.093  Score=46.03  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=21.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++.+.+...-+
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~~   29 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDEF   29 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCcc
Confidence            6789999999999999999886443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=92.17  E-value=0.082  Score=46.57  Aligned_cols=25  Identities=12%  Similarity=0.250  Sum_probs=21.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++...+...-+
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~~~   28 (170)
T 1ek0_A            4 IKLVLLGEAAVGKSSIVLRFVSNDF   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4789999999999999999876543

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=92.15  E-value=0.84  Score=51.64  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=17.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      .++++.||||+|||++...+.
T Consensus       110 ~~vii~gpTGSGKTtllp~ll  130 (773)
T 2xau_A          110 QIMVFVGETGSGKTTQIPQFV  130 (773)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            389999999999999666553

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=92.13  E-value=0.091  Score=46.92  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++++|++|+|||++...+...-
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEEECcCCCCHHHHHHHHHhCc
Confidence            789999999999999999987543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=92.11  E-value=0.062  Score=57.15  Aligned_cols=25  Identities=16%  Similarity=0.315  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.++||+|+|||+|+++|+..+.
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccc
Confidence            5889999999999999999998763

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=92.10  E-value=0.086  Score=54.25  Aligned_cols=26  Identities=38%  Similarity=0.690  Sum_probs=24.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +.++++||+|+|||++..+|+-.+++
T Consensus        24 g~~~i~G~NGaGKTTll~ai~~al~g   49 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAISFALFG   49 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            68889999999999999999999887

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=92.10  E-value=0.092  Score=47.79  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++++|++|+|||++...+...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            78999999999999999998743

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.08  E-value=0.11  Score=46.03  Aligned_cols=26  Identities=15%  Similarity=0.089  Sum_probs=22.0

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +..++++|++|+|||++...+...-+
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~~   32 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGEV   32 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCC
Confidence            37899999999999999999975443

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=92.06  E-value=0.088  Score=48.15  Aligned_cols=25  Identities=12%  Similarity=0.197  Sum_probs=21.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++...+...-+
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~~   48 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDHF   48 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCC
Confidence            6899999999999999999876543

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=92.05  E-value=0.87  Score=46.35  Aligned_cols=20  Identities=20%  Similarity=0.064  Sum_probs=16.3

Q ss_pred             eEEEeccCCCcHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la  259 (550)
                      .+++.+|||+|||..+-..+
T Consensus        60 ~~li~a~TGsGKT~~~~~~~   79 (400)
T 1s2m_A           60 DILARAKNGTGKTAAFVIPT   79 (400)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEECCCCcHHHHHHHHHH
Confidence            58999999999998765444

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=92.04  E-value=0.39  Score=53.64  Aligned_cols=19  Identities=32%  Similarity=0.506  Sum_probs=16.6

Q ss_pred             eeEEEeccCCCcHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKA  257 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~  257 (550)
                      .+++++||||+|||+.+-.
T Consensus        47 ~~~lv~apTGsGKT~~~~l   65 (715)
T 2va8_A           47 NRLLLTSPTGSGKTLIAEM   65 (715)
T ss_dssp             CCEEEECCTTSCHHHHHHH
T ss_pred             CcEEEEcCCCCcHHHHHHH
Confidence            4899999999999998843

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=92.04  E-value=0.23  Score=49.53  Aligned_cols=38  Identities=18%  Similarity=0.376  Sum_probs=31.5

Q ss_pred             eeEEEecc-CCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          239 GLFLFAGP-NCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp-~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      .+++|+|+ +|+|||++|..||..+-.   .....+-+|+..
T Consensus       105 kvI~vts~kgG~GKTtva~nLA~~lA~---~G~rVLLID~D~  143 (299)
T 3cio_A          105 NILMITGATPDSGKTFVSSTLAAVIAQ---SDQKVLFIDADL  143 (299)
T ss_dssp             CEEEEEESSSSSCHHHHHHHHHHHHHH---TTCCEEEEECCT
T ss_pred             eEEEEECCCCCCChHHHHHHHHHHHHh---CCCcEEEEECCC
Confidence            68888887 799999999999998876   556788888764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=92.02  E-value=0.1  Score=47.85  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=21.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++|+|++|+|||+|...+...-+
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~~~   39 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYDEF   39 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC
Confidence            7899999999999999999876543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=92.01  E-value=0.071  Score=53.12  Aligned_cols=25  Identities=36%  Similarity=0.438  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..+.+.||+|+|||+|.++|+..+.
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            5889999999999999999998764

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=92.00  E-value=0.085  Score=50.03  Aligned_cols=26  Identities=15%  Similarity=0.291  Sum_probs=23.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .-+.|.|++|+|||+.++.|++.+..
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~   29 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQ   29 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999866

>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*

Probab=92.00  E-value=0.15  Score=53.69  Aligned_cols=24  Identities=38%  Similarity=0.279  Sum_probs=20.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .++++||+|+|||.++-.++..+.
T Consensus       110 ~~ll~~~TGsGKT~~~l~~i~~~~  133 (472)
T 2fwr_A          110 RGCIVLPTGSGKTHVAMAAINELS  133 (472)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcC
Confidence            589999999999999887776663

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=91.98  E-value=0.088  Score=47.72  Aligned_cols=25  Identities=20%  Similarity=0.372  Sum_probs=22.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|||||++.+.+...-+
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~~~   32 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKDCF   32 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC
Confidence            7889999999999999999987544

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=91.96  E-value=0.082  Score=46.76  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=18.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      .++++|++|||||++...+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            579999999999999999863

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=91.95  E-value=0.089  Score=47.42  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++|+|+||+|||+|.+.+...
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=91.92  E-value=0.1  Score=46.74  Aligned_cols=24  Identities=17%  Similarity=0.155  Sum_probs=21.0

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHH
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      +..++++|++|+|||++...+...
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            368999999999999999888754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=91.92  E-value=0.095  Score=46.22  Aligned_cols=25  Identities=12%  Similarity=0.177  Sum_probs=21.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++.+.+...-+
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~   31 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDSF   31 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCC
Confidence            6899999999999999999886543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=91.92  E-value=0.091  Score=48.14  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=20.9

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHH
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      +..++++|++|||||++.+.+...
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            378999999999999999998864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=91.89  E-value=0.087  Score=46.48  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=20.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++++|++|+|||++...+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            47899999999999999998754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=91.89  E-value=0.078  Score=46.74  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=21.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++++|++|+|||++...+...-
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            688999999999999999988643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=91.88  E-value=0.1  Score=52.02  Aligned_cols=23  Identities=35%  Similarity=0.407  Sum_probs=20.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .+.|.||||+|||+|.++|+...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            78899999999999999998654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=91.87  E-value=0.089  Score=46.39  Aligned_cols=21  Identities=29%  Similarity=0.358  Sum_probs=18.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      ..++++|++|+|||++.+.+.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            368999999999999998875

>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A

Probab=91.85  E-value=0.32  Score=51.28  Aligned_cols=23  Identities=17%  Similarity=0.237  Sum_probs=17.0

Q ss_pred             eeEEEeccCCCcHHH--HHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAE--LAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~--lAk~la~~  261 (550)
                      .++++.||||+|||.  +.-++...
T Consensus        20 ~~~lv~a~TGsGKT~~~~~~~l~~~   44 (451)
T 2jlq_A           20 RLTIMDLHPGAGKTKRILPSIVREA   44 (451)
T ss_dssp             CEEEECCCTTSSCCTTHHHHHHHHH
T ss_pred             CeEEEECCCCCCHhhHHHHHHHHHH
Confidence            477999999999998  44444443

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=91.84  E-value=0.45  Score=48.56  Aligned_cols=18  Identities=11%  Similarity=0.078  Sum_probs=15.8

Q ss_pred             eeEEEeccCCCcHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAK  256 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk  256 (550)
                      ..+++.+|||+|||..+-
T Consensus        65 ~~~lv~apTGsGKT~~~~   82 (412)
T 3fht_A           65 QNLIAQSQSGTGKTAAFV   82 (412)
T ss_dssp             CCEEEECCTTSCHHHHHH
T ss_pred             CeEEEECCCCchHHHHHH
Confidence            588999999999999763

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=91.82  E-value=0.087  Score=47.83  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=22.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||+|...+...-+
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~~   40 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDTF   40 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Confidence            7899999999999999999976543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=91.81  E-value=0.1  Score=47.60  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=21.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++|+|++|+|||+|...+...-+
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~~   50 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRNEF   50 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCC
Confidence            6889999999999999999886544

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=91.80  E-value=0.11  Score=47.15  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=20.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++++|++|+|||++...+...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            68999999999999999988654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=91.77  E-value=0.12  Score=45.33  Aligned_cols=25  Identities=16%  Similarity=0.191  Sum_probs=21.2

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++++|++|||||++...+...-+.
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~~~   26 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGEIV   26 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCcC
Confidence            4789999999999999999765544

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=91.76  E-value=0.098  Score=48.61  Aligned_cols=26  Identities=31%  Similarity=0.318  Sum_probs=22.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++++|++|||||+|...+...-+.
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~~~   33 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQYR   33 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcc
Confidence            68999999999999999999865543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=91.76  E-value=0.091  Score=47.34  Aligned_cols=25  Identities=16%  Similarity=0.321  Sum_probs=21.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++|+|++|+|||++...+...-+
T Consensus         5 ~ki~v~G~~~~GKSsli~~l~~~~~   29 (189)
T 4dsu_A            5 YKLVVVGADGVGKSALTIQLIQNHF   29 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC
Confidence            6789999999999999999986543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=91.75  E-value=0.13  Score=46.75  Aligned_cols=26  Identities=12%  Similarity=0.262  Sum_probs=22.4

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +..++++|++|+|||+|...+...-+
T Consensus         7 ~~ki~v~G~~~~GKSsli~~l~~~~~   32 (208)
T 3clv_A            7 SYKTVLLGESSVGKSSIVLRLTKDTF   32 (208)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCcC
Confidence            37899999999999999999986543

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=91.73  E-value=0.78  Score=43.51  Aligned_cols=17  Identities=29%  Similarity=0.296  Sum_probs=14.7

Q ss_pred             eEEEeccCCCcHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAK  256 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk  256 (550)
                      .+++.+|||+|||..+-
T Consensus        68 ~~l~~a~TGsGKT~~~~   84 (245)
T 3dkp_A           68 ELLASAPTGSGKTLAFS   84 (245)
T ss_dssp             CEEEECCTTSCHHHHHH
T ss_pred             CEEEECCCCCcHHHHHH
Confidence            68999999999998643

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=91.71  E-value=0.097  Score=46.02  Aligned_cols=25  Identities=16%  Similarity=0.315  Sum_probs=21.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++.+.+...-+
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~~~   28 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQGIF   28 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4789999999999999999986433

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=91.71  E-value=1.1  Score=45.04  Aligned_cols=21  Identities=10%  Similarity=0.050  Sum_probs=17.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      ..+++.+|||+|||..+-..+
T Consensus        45 ~~~lv~a~TGsGKT~~~~~~~   65 (395)
T 3pey_A           45 RNMIAQSQSGTGKTAAFSLTM   65 (395)
T ss_dssp             CCEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            588999999999999765433

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=91.71  E-value=0.1  Score=46.05  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++++|++|+|||++.+.+...-
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            689999999999999999988653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=91.66  E-value=0.1  Score=49.84  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=21.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++|+|++|+|||++..+|...-
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCC
Confidence            789999999999999999987543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=91.66  E-value=0.1  Score=46.11  Aligned_cols=23  Identities=17%  Similarity=0.124  Sum_probs=20.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++++|++|+|||++...+...
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47899999999999999998753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=91.64  E-value=0.09  Score=53.98  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.|+||||+|||+|.++|+..+
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CEEEEECCCCccHHHHHHHHhccc
Confidence            478999999999999999998544

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=91.62  E-value=0.13  Score=46.91  Aligned_cols=25  Identities=24%  Similarity=0.196  Sum_probs=21.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++|+|++|||||+|...+....+
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~~~   45 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTGTY   45 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Confidence            7899999999999999988876544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=91.57  E-value=0.16  Score=54.79  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=27.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      .++++.||||+|||++++.++..+..   ...+.+.+..
T Consensus       282 ~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~~vi~~~~  317 (525)
T 1tf7_A          282 SIILATGATGTGKTLLVSRFVENACA---NKERAILFAY  317 (525)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEES
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh---CCCCEEEEEE
Confidence            68899999999999999999987654   3334555554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=91.54  E-value=0.13  Score=52.43  Aligned_cols=26  Identities=19%  Similarity=0.257  Sum_probs=23.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|+||||+|||++.+.|...+..
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~~~~~  100 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGKMLTE  100 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            78999999999999999999987643

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=91.47  E-value=0.097  Score=47.00  Aligned_cols=24  Identities=17%  Similarity=0.174  Sum_probs=21.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++|+|++|+|||+|...+...-
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~~~   30 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVEGQ   30 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECcCCCCHHHHHHHHHcCC
Confidence            689999999999999999987543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=91.44  E-value=0.07  Score=49.40  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.++||+|+|||+|.+.|+...
T Consensus        27 ~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           27 IEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            679999999999999999886443

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=91.39  E-value=0.13  Score=46.29  Aligned_cols=25  Identities=24%  Similarity=0.325  Sum_probs=21.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++.+.+...-+
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~~   35 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKKF   35 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Confidence            7899999999999999999876544

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=91.33  E-value=0.14  Score=46.71  Aligned_cols=25  Identities=16%  Similarity=0.205  Sum_probs=21.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||+|...+...-+
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~~~   33 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKGTF   33 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCcHHHHHHHHHcCCC
Confidence            7899999999999999999986433

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=91.33  E-value=0.16  Score=54.49  Aligned_cols=38  Identities=3%  Similarity=-0.073  Sum_probs=30.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCC-CCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDN-DNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~-~~~li~id~s~  279 (550)
                      ..+++.|+||+|||++|..+|..+-.   . ..+.+.+++.+
T Consensus       243 ~l~li~G~pG~GKT~lal~~a~~~a~---~~g~~vl~~s~E~  281 (503)
T 1q57_A          243 EVIMVTSGSGMVMSTFVRQQALQWGT---AMGKKVGLAMLEE  281 (503)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHTT---TSCCCEEEEESSS
T ss_pred             eEEEEeecCCCCchHHHHHHHHHHHH---hcCCcEEEEeccC
Confidence            68899999999999999999988754   3 34677776543

>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*

Probab=91.32  E-value=0.91  Score=45.89  Aligned_cols=18  Identities=17%  Similarity=0.069  Sum_probs=15.1

Q ss_pred             eEEEeccCCCcHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKA  257 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~  257 (550)
                      .+++.+|||+|||..+-.
T Consensus        60 ~~lv~~~TGsGKT~~~~~   77 (394)
T 1fuu_A           60 DVLAQAQSGTGKTGTFSI   77 (394)
T ss_dssp             CEEECCCSSHHHHHHHHH
T ss_pred             CEEEECCCCChHHHHHHH
Confidence            689999999999987543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=91.30  E-value=0.11  Score=47.26  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=20.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++|+|++|||||+|...+...-
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            789999999999999999886443

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=91.30  E-value=0.11  Score=47.87  Aligned_cols=23  Identities=26%  Similarity=0.515  Sum_probs=20.2

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHH
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      ++..++++|++|+|||++.+.+.
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            34788999999999999999885

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=91.29  E-value=0.12  Score=47.51  Aligned_cols=25  Identities=24%  Similarity=0.452  Sum_probs=22.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++|+|++|||||+|...+...-+
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~~   49 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGEF   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCC
Confidence            7899999999999999999987544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.27  E-value=0.11  Score=46.47  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++++|++|+|||++...+...-
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            689999999999999999987643

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=91.24  E-value=0.2  Score=55.80  Aligned_cols=17  Identities=41%  Similarity=0.595  Sum_probs=15.8

Q ss_pred             eeEEEeccCCCcHHHHH
Q 036633          239 GLFLFAGPNCSGKAELA  255 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lA  255 (550)
                      ..+.++||+|+|||||+
T Consensus        45 e~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           45 KLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             SEEEEECSTTSSHHHHH
T ss_pred             CEEEEECCCCCCHHHHh
Confidence            57899999999999996

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=91.18  E-value=0.35  Score=47.89  Aligned_cols=40  Identities=10%  Similarity=0.205  Sum_probs=31.5

Q ss_pred             CeeEEEecc-CCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          238 LGLFLFAGP-NCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       238 p~~lLf~Gp-~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +.+++|+|+ +|+|||++|-.||..+-.   .....+-+|+...
T Consensus        92 ~kvI~vts~kgG~GKTtva~nLA~~lA~---~G~rVLLID~D~~  132 (286)
T 3la6_A           92 NNVLMMTGVSPSIGMTFVCANLAAVISQ---TNKRVLLIDCDMR  132 (286)
T ss_dssp             CCEEEEEESSSSSSHHHHHHHHHHHHHT---TTCCEEEEECCTT
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHh---CCCCEEEEeccCC
Confidence            356666665 799999999999999876   5567888887654

>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}

Probab=91.16  E-value=0.76  Score=54.12  Aligned_cols=21  Identities=19%  Similarity=0.218  Sum_probs=17.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      ..++++||||+|||..+-..+
T Consensus       200 ~dvLV~ApTGSGKTlva~l~i  220 (1108)
T 3l9o_A          200 ESVLVSAHTSAGKTVVAEYAI  220 (1108)
T ss_dssp             CCEEEECCSSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCChHHHHHHHH
Confidence            378999999999999875433

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=91.12  E-value=0.57  Score=52.41  Aligned_cols=24  Identities=29%  Similarity=0.364  Sum_probs=18.4

Q ss_pred             eeEEEeccCCCcHHHHH-HHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELA-KAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lA-k~la~~l  262 (550)
                      .+++++||||+|||..+ -.+.+.+
T Consensus        40 ~~~lv~apTGsGKT~~~~l~il~~~   64 (720)
T 2zj8_A           40 KNALISIPTASGKTLIAEIAMVHRI   64 (720)
T ss_dssp             CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred             CcEEEEcCCccHHHHHHHHHHHHHH
Confidence            48999999999999987 3343333

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=91.12  E-value=0.12  Score=46.29  Aligned_cols=25  Identities=24%  Similarity=0.202  Sum_probs=22.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|||||++...+...-+
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~~~   32 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTGSY   32 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC
Confidence            7899999999999999999887544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=91.10  E-value=0.13  Score=45.76  Aligned_cols=25  Identities=16%  Similarity=0.259  Sum_probs=22.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++.+.+...-+
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~~   40 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKKF   40 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Confidence            6899999999999999999986544

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=91.07  E-value=0.14  Score=52.07  Aligned_cols=28  Identities=43%  Similarity=0.510  Sum_probs=24.6

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .|+..+|+||+|+|||++..+|.-.+++
T Consensus        22 ~~~~~~i~G~NGsGKS~lleAi~~~l~~   49 (339)
T 3qkt_A           22 KEGINLIIGQNGSGKSSLLDAILVGLYW   49 (339)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3578899999999999999999877765

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=90.99  E-value=0.14  Score=46.81  Aligned_cols=25  Identities=16%  Similarity=0.183  Sum_probs=21.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|||||+|...+...-+
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~~~   53 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTKRF   53 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCC
Confidence            7899999999999999999886533

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=90.99  E-value=0.14  Score=47.75  Aligned_cols=25  Identities=20%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|||||+|.+.+...-+
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~~~   53 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKDCF   53 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCC
Confidence            6899999999999999999987544

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=90.99  E-value=0.15  Score=48.98  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=24.1

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ++..+++.|.+|||||+++..|+..+.
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            347889999999999999999998875

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.99  E-value=0.14  Score=46.99  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=21.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++++|++|+|||+|...+...-
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            789999999999999999987644

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=90.96  E-value=0.12  Score=46.72  Aligned_cols=24  Identities=29%  Similarity=0.350  Sum_probs=21.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++++|++|||||+|.+.+....
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            789999999999999998887654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=90.95  E-value=0.15  Score=46.37  Aligned_cols=25  Identities=16%  Similarity=0.167  Sum_probs=21.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++|+|++|+|||+|...+...-+
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~~~   45 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAGRF   45 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCC
Confidence            6899999999999999999875443

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=90.93  E-value=0.12  Score=46.56  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .++++|++|+|||++...+...-
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            57899999999999999987543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=90.90  E-value=0.11  Score=47.88  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=19.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      ..++|+|++|||||+|.+.+.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            678999999999999999885

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=90.77  E-value=0.13  Score=46.05  Aligned_cols=25  Identities=16%  Similarity=0.199  Sum_probs=21.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|+|||++...+...-+
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~~~   30 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTNAF   30 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCC
Confidence            5789999999999999999876443

>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}

Probab=90.71  E-value=1.2  Score=51.93  Aligned_cols=18  Identities=22%  Similarity=0.298  Sum_probs=16.1

Q ss_pred             eEEEeccCCCcHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKA  257 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~  257 (550)
                      ++++++|||+|||.++..
T Consensus       103 ~vLV~apTGSGKTlva~l  120 (1010)
T 2xgj_A          103 SVLVSAHTSAGKTVVAEY  120 (1010)
T ss_dssp             EEEEECCTTSCHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHH
Confidence            799999999999998754

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=90.70  E-value=0.11  Score=52.19  Aligned_cols=24  Identities=33%  Similarity=0.407  Sum_probs=21.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++++||+|+|||++.+.|....
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            588999999999999999999765

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=90.70  E-value=0.13  Score=52.49  Aligned_cols=26  Identities=19%  Similarity=0.064  Sum_probs=23.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|.||+|+|||+|.+.|+..+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            68999999999999999999998754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=90.69  E-value=0.21  Score=45.41  Aligned_cols=24  Identities=17%  Similarity=0.216  Sum_probs=21.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..++++|++|+|||+|...+...-
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            678999999999999999987643

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=90.68  E-value=0.76  Score=45.58  Aligned_cols=17  Identities=12%  Similarity=0.116  Sum_probs=15.2

Q ss_pred             eeEEEeccCCCcHHHHH
Q 036633          239 GLFLFAGPNCSGKAELA  255 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lA  255 (550)
                      ..+++.+|||+|||...
T Consensus       132 ~~~l~~a~TGsGKT~a~  148 (300)
T 3fmo_B          132 QNLIAQSQSGTGKTAAF  148 (300)
T ss_dssp             CCEEEECCTTSSHHHHH
T ss_pred             CeEEEECCCCCCccHHH
Confidence            58999999999999864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=90.67  E-value=0.13  Score=50.14  Aligned_cols=24  Identities=17%  Similarity=0.188  Sum_probs=21.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ..+.|+|+||+|||++..++....
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999997654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=90.67  E-value=0.16  Score=46.25  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=21.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|||||+|...+...-+
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~~~   46 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTKRF   46 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             EEEEEECCCCCcHHHHHHHHHhCCC
Confidence            6799999999999999988876543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=90.63  E-value=0.14  Score=46.78  Aligned_cols=25  Identities=20%  Similarity=0.154  Sum_probs=22.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++|++|||||++...+...-+
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~~~   48 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKGEI   48 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCC
Confidence            7899999999999999999886544

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=90.63  E-value=0.22  Score=58.08  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      ..++++||+|+|||++.++++-
T Consensus       790 ~i~~ItGpNgsGKSTlLr~iGl  811 (1022)
T 2o8b_B          790 YCVLVTGPNMGGKSTLMRQAGL  811 (1022)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHHH
Confidence            5789999999999999999843

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=90.62  E-value=0.15  Score=45.99  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHH
Q 036633          238 LGLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      +..++++|++|+|||++...+..
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            37899999999999999988864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=90.62  E-value=0.12  Score=51.66  Aligned_cols=23  Identities=17%  Similarity=0.215  Sum_probs=19.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++++||+|+|||+|.+.|+..
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            57799999999999999998754

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=90.61  E-value=0.16  Score=53.18  Aligned_cols=36  Identities=19%  Similarity=0.269  Sum_probs=29.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      .+++++||||+|||++++.+...+..   ...+++.+|.
T Consensus        54 ~h~~i~G~tGsGKs~~~~~li~~~~~---~g~~viv~Dp   89 (437)
T 1e9r_A           54 RHLLVNGATGTGKSVLLRELAYTGLL---RGDRMVIVDP   89 (437)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHH---TTCEEEEEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEeC
Confidence            79999999999999998877766655   4457888885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	550
d1qvra3	315	c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus	6e-23
d1r6bx3	315	c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, A	4e-13
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	5e-07
d1um8a_	364	c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2	1e-05
d1njfa_	239	c.37.1.20 (A:) delta prime subunit of DNA polymera	6e-04
d1sxjd2	237	c.37.1.20 (D:26-262) Replication factor C2 {Baker'	8e-04
d1qvra2	387	c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus	0.004

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

 Score = 97.5 bits (242), Expect = 6e-23
 Identities = 85/313 (27%), Positives = 141/313 (45%), Gaps = 42/313 (13%)

Query: 184 IPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQLGLFL 242
           IP S       E+ +R++  L KRV GQ++AI  + +A+   + A+ GL    R +G FL
Sbjct: 1   IPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAI---RRARAGLKDPNRPIGSFL 57

Query: 243 FAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS---------- 292
           F GP   GK ELAK +A  L+D  +    +I  DM  Y E  ++     +          
Sbjct: 58  FLGPTGVGKTELAKTLAATLFDTEE---AMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG 114

Query: 293 --LAALVKKRPYSVVLFDKIEKANSSILNLLLKILK----TDFNRKATRGIAAFDLTNTL 346
             L   V++RPYSV+LFD+IEKA+  + N+LL+IL     TD + +        D  NT+
Sbjct: 115 GQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTV------DFRNTV 168

Query: 347 IIMTSDLKDEQVYE--VMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRL 404
           II+TS+L    + E            +EV   L +    + L++L  I +  PL      
Sbjct: 169 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQ-- 226

Query: 405 LLREWACEETKRRNN--DSKAVIVCPSTSALVHIASNA-ARKYGQNGEGLKRWMDQR--- 458
            +R+    +          K + +  + +A   +A       +G     L+R + +    
Sbjct: 227 -IRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFG--ARPLRRVIQRELET 283

Query: 459 PSADHVIDKFLRD 471
           P A  ++   +++
Sbjct: 284 PLAQKILAGEVKE 296

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

 Score = 68.3 bits (166), Expect = 4e-13
 Identities = 70/306 (22%), Positives = 121/306 (39%), Gaps = 50/306 (16%)

Query: 195 ERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSS-RRQLGLFLFAGPNCSGKAE 253
           +    +  RLK  VFGQ+ AI+ + EA+   K A+ GL    + +G FLFAGP   GK E
Sbjct: 11  DTLKNLGDRLKMLVFGQDKAIEALTEAI---KMARAGLGHEHKPVGSFLFAGPTGVGKTE 67

Query: 254 LAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDS------------LAALVKKRP 301
           +   ++  L         L+ FDM  Y E  ++     +            L   V K P
Sbjct: 68  VTVQLSKALGI------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHP 121

Query: 302 YSVVLFDKIEKANSSILNLLLKILK----TDFNRKATRGIAAFDLTNTLIIMTSDLKDEQ 357
           ++V+L D+IEKA+  + N+LL+++     TD N +        D  N +++MT++    +
Sbjct: 122 HAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGR------KADFRNVVLVMTTNAGVRE 175

Query: 358 VYEVMLTATYGRVNEVTGSLFKPSLL-KLLDKLVVIDLAVPLLDTT-----RLLLREWAC 411
                +   +   +       K     +  ++L  I     L            + E   
Sbjct: 176 TERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQV 235

Query: 412 EETKRRNNDSKAVIVCPSTSALVHIASNA-ARKYGQNGEGLKRWMDQ---RPSADHVIDK 467
           +  ++       V +  S  A   +A     R  G     + R +     +P A+ ++  
Sbjct: 236 QLDQKG------VSLEVSQEARNWLAEKGYDRAMG--ARPMARVIQDNLKKPLANELLFG 287

Query: 468 FLRDAG 473
            L D G
Sbjct: 288 SLVDGG 293

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 49.4 bits (117), Expect = 5e-07
 Identities = 46/289 (15%), Positives = 83/289 (28%), Gaps = 24/289 (8%)

Query: 203 RLKKRVFGQNDAIDVIFEAL---TKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIA 259
            L + + GQ DA   +  AL    +    ++ L         L  GP   GK E+A+ +A
Sbjct: 11  ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA 70

Query: 260 NELYDNNDNDNH---LIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSS 316
                               +G   +         +  A+       +V  D+I+K    
Sbjct: 71  KLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKK 130

Query: 317 ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY--EVMLTATYGRVNEVT 374
                  + +    R         DL   +   T   K   V    ++  A+ G      
Sbjct: 131 GEYSGADVSREGVQR---------DLLPLVEGSTVSTKHGMVKTDHILFIAS-GAFQVAR 180

Query: 375 GSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALV 434
            S   P L   L   V +           L     +  E  +    ++ V +  +T A+ 
Sbjct: 181 PSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVK 240

Query: 435 HIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEETE 483
            IA  A R            +  R     V+++ +    ++        
Sbjct: 241 KIAEAAFRV-----NEKTENIGARRL-HTVMERLMDKISFSASDMNGQT 283

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 34/186 (18%), Positives = 54/186 (29%), Gaps = 35/186 (18%)

Query: 203 RLKKRVFGQNDAIDVIFEAL-------------------TKPKAAKKGLSSRRQLGLFLF 243
            L   V GQ  A  V   A+                         +            L 
Sbjct: 14  VLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILL 73

Query: 244 AGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE--SIKHFFDSLAALVKKRP 301
            GP  SGK  +A+ +A  L       +     + G   E     +     +    V+K  
Sbjct: 74  IGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQ 133

Query: 302 YSVVLFDKIEK--------------ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLI 347
             +V  D+I+K              +   +   LLKI++        +G       N + 
Sbjct: 134 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQ 193

Query: 348 IMTSDL 353
           I TSD+
Sbjct: 194 IDTSDI 199

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 28/137 (20%)

Query: 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN- 266
           V GQ   +  +            GLS  R    +LF+G    GK  +A+ +A  L     
Sbjct: 14  VVGQEHVLTAL----------ANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 63

Query: 267 ---------------DNDNH--LIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDK 309
                          +      LI  D  + T++E  +   D++     +  + V L D+
Sbjct: 64  ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDE 123

Query: 310 IEKANSSILNLLLKILK 326
           +   +    N LLK L+
Sbjct: 124 VHMLSRHSFNALLKTLE 140

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 11/111 (9%)

Query: 208 VFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNND 267
           V  Q+ A+ V+ + L               L   LF GP  +GK     A+  ELY  + 
Sbjct: 14  VTAQDHAVTVLKKTLKSAN-----------LPHMLFYGPPGTGKTSTILALTKELYGPDL 62

Query: 268 NDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL 318
             + ++  +  +   +  ++    + A L   +P    L +        I+
Sbjct: 63  MKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIII 113

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 33/194 (17%), Positives = 80/194 (41%), Gaps = 32/194 (16%)

Query: 17  SLEKIHRLQIQDEALFLASRIA-QHPRNKATGELRERFIDILLKGIKRCLNSRDKYQKEL 75
             E  H ++I D A+  A+ ++ ++   +    L ++ ID++ +   R   + +   +E+
Sbjct: 199 KYEVHHGVRISDSAIIAAATLSHRYITERR---LPDKAIDLIDEAAARLRMALESAPEEI 255

Query: 76  DKHKYFLRRAVVEYEQLVKE------------DTDHSSRSFWLRQIDNELKDAFFELVSF 123
           D  +    +  +E E L KE            + + +  +  + ++  E +     L   
Sbjct: 256 DALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKL 315

Query: 124 VKLRMQVEYDDFVSCVHDAKRVKDYSKI--------------LDQIDARVHGKFKEKLAV 169
            + + ++  D+    +  A+R  D ++               ++ +  ++ G    +L V
Sbjct: 316 REAQHRL--DEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEV 373

Query: 170 DVEEIAEVASKLTG 183
             E+IAE+ S+ TG
Sbjct: 374 TEEDIAEIVSRWTG 387

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	550
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	100.0
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	100.0
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	100.0
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.96
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.96
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.9
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.86
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.81
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.78
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.78
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.78
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.77
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.76
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.75
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.75
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.74
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.69
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.68
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.65
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.64
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.62
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.61
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.6
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.59
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.51
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.47
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.46
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.44
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.39
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.38
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.32
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.29
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.2
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.78
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.3
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.23
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	98.14
d1tuea_	205	Replication protein E1 helicase domain {Human papi	98.12
d1okkd2	207	GTPase domain of the signal recognition particle r	97.76
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.75
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.74
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.68
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.66
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.66
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.63
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.61
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.61
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.61
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.59
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.55
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.54
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.54
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.54
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.54
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.5
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.48
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.48
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.46
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.44
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.44
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.44
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.41
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.39
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.38
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.38
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.37
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.36
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.34
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.3
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.28
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.27
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.27
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.24
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.22
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.21
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.21
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.2
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.16
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.15
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.12
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.11
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.11
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.1
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.08
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.06
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.05
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.04
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.96
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.95
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.94
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.92
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.9
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.9
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.84
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.79
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.67
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.66
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.64
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.58
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.55
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.48
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.45
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.45
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.44
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.3
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.22
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.15
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.15
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.12
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	96.08
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.06
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.01
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.01
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	95.9
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	95.84
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.77
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	95.7
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.66
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.6
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	95.58
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.53
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.5
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.36
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.35
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.32
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.27
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	95.22
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.14
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.12
d1qzma_	94	ATPase domain of protease Lon (La) {Escherichia co	95.11
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.09
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.02
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	94.82
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.77
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.47
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.45
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.43
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.4
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.37
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.22
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.18
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	93.97
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	93.91
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	93.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	93.85
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.79
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.78
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.77
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	93.67
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.51
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.47
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.39
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.22
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.21
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.21
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	93.18
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.06
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.05
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	92.95
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	92.92
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.91
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	92.9
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.87
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.85
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.82
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.8
d1nrjb_	209	Signal recognition particle receptor beta-subunit	92.77
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	92.75
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	92.7
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.69
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.63
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.56
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.52
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.4
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.33
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	92.31
d2fh5b1	207	Signal recognition particle receptor beta-subunit	92.25
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.21
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	92.18
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.16
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.11
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.09
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	92.08
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	91.98
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	91.96
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	91.95
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	91.94
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.91
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.9
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	91.87
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	91.8
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.76
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	91.71
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	91.57
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.57
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	91.53
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	91.52
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.5
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.47
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.38
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.36
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	91.3
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	91.28
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	91.22
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.21
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.2
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.19
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	91.18
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.18
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	91.17
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.17
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	91.13
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.06
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	91.03
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	90.99
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	90.89
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	90.83
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	90.77
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.75
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	90.74
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	90.74
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.72
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.72
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	90.67
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	90.54
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.35
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.06
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.05
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.02
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.58
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	89.47
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	89.28
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.18
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	89.15
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	89.04
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	89.02
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	88.93
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	88.75
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.57
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	88.41
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	88.37
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	88.02
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	87.41
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.0
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	86.28
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	85.26
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	84.9
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	84.46
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	84.26
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	84.16
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	83.81
d1z63a1	230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	83.24
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	83.17
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	83.14
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.98
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	82.87
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	82.56
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	81.31
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	81.16
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	80.94
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.57
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	80.54
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	80.46
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	80.15

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.4e-52  Score=427.89  Aligned_cols=283  Identities=30%  Similarity=0.501  Sum_probs=263.3

Q ss_pred             CCCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          184 IPASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       184 ip~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ||++++.+++.+++.++++.|+++|+||++|++.|+.++.++   ++|+.+|++| +++||+||||||||++|+.||+.+
T Consensus         1 ~p~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~v~~~i~~~---~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3           1 IPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA---RAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             CHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH---GGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCchhhhHHHHHHHHHHHHHhcCeEeCHHHHHHHHHHHHHHH---hcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            688899999999999999999999999999999999999999   9999999999 899999999999999999999999


Q ss_pred             ccCCCCCCceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccc
Q 036633          263 YDNNDNDNHLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFN  330 (550)
Q Consensus       263 ~~~~~~~~~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~  330 (550)
                      ++   .+.+++++||++|++.+++++|+|            .|+++++++|++||+||||||+||++++.|++++++|  
T Consensus        78 ~~---~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~~~v~~~ll~~l~~g--  152 (315)
T d1qvra3          78 FD---TEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDG--  152 (315)
T ss_dssp             HS---SGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTT--
T ss_pred             cC---CCcceEEEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHhCCCcEEEEehHhhcCHHHHHHHHHHhccC--
Confidence            98   888999999999999999999987            5899999999999999999999999999999999999  


Q ss_pred             cccccC-CeEeecCCeEEEEeCCCChHHHHHhhhh-----hhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHH
Q 036633          331 RKATRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLT-----ATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRL  404 (550)
Q Consensus       331 ~~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~-----~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~  404 (550)
                      + ++|+ |+.+||+|++||||||.|++.+......     .........+.+.|+|+|++|+|.+++|.   ||+.+++.
T Consensus       153 ~-~~~~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~---~L~~~~~~  228 (315)
T d1qvra3         153 R-LTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFR---PLTKEQIR  228 (315)
T ss_dssp             E-ECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCC---CCCHHHHH
T ss_pred             c-eeCCCCcEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeecc---chhhhhhH
Confidence            8 9999 9999999999999999999888654321     23455667788999999999999999999   99999999


Q ss_pred             HHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCccccccc
Q 036633          405 LLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKE  480 (550)
Q Consensus       405 ~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~  480 (550)
                      +|+...+.++..++...++ .+.++++++++|++.+| +.+||  |+|+++|++   +||++.++.+++.++..+.+++.
T Consensus       229 ~I~~~~l~~l~~rl~~~~i-~l~i~~~~~~~L~~~~y~~~~GA--R~L~r~Ie~~i~~~La~~iL~~~~~~g~~i~i~~~  305 (315)
T d1qvra3         229 QIVEIQLSYLRARLAEKRI-SLELTEAAKDFLAERGYDPVFGA--RPLRRVIQRELETPLAQKILAGEVKEGDRVQVDVG  305 (315)
T ss_dssp             HHHHHHHHHHHHHHHTTTC-EEEECHHHHHHHHHHHCBTTTBT--STHHHHHHHHTHHHHHHHHHHTSSCSSCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHhccc-cccccHHHHHHHHHhCCCCCCCc--chHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEEE
Confidence            9999999999999999999 99999999999999999 99999  999999999   99999999999988888887765


Q ss_pred             h
Q 036633          481 E  481 (550)
Q Consensus       481 ~  481 (550)
                      .
T Consensus       306 ~  306 (315)
T d1qvra3         306 P  306 (315)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-52  Score=426.12  Aligned_cols=279  Identities=25%  Similarity=0.371  Sum_probs=254.5

Q ss_pred             CCCCCCCchHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          185 PASWFCTKPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       185 p~~~~~~~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      |+.++.+++.++|.++++.|+++|+||++|++.|+.+++++   ++|+.++++| ++|||+||||||||++|++||+.++
T Consensus         1 p~~~~~~~d~~~l~~l~~~L~~~viGQ~~a~~~v~~~v~~~---~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3           1 PEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA---RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             CCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH---HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CcccccHhHHHHHHHHHHHhCCeecChHHHHHHHHHHHHHH---HccCCCCCCCceEEEEECCCcchhHHHHHHHHhhcc
Confidence            88899999999999999999999999999999999999999   9999999999 9999999999999999999999998


Q ss_pred             cCCCCCCceeEEecCCCCchhhhhhHHh------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhcccc
Q 036633          264 DNNDNDNHLIHFDMGNYTELESIKHFFD------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNR  331 (550)
Q Consensus       264 ~~~~~~~~li~id~s~~~~~~~~s~liG------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~  331 (550)
                      .      +|+++||++|++.|++++|+|            .+++.++++|++||+||||||+||++++.||+++++|  +
T Consensus        78 ~------~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~~V~~~lLqild~G--~  149 (315)
T d1r6bx3          78 I------ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNG--T  149 (315)
T ss_dssp             C------EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHS--E
T ss_pred             C------CeeEeccccccchhhhhhhcccCCCccccccCChhhHHHHhCccchhhhcccccccchHhhhhHHhhccc--e
Confidence            8      999999999999999999988            5889999999999999999999999999999999999  8


Q ss_pred             ccccC-CeEeecCCeEEEEeCCCChHHHHHhhhh----hhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHH
Q 036633          332 KATRG-IAAFDLTNTLIIMTSDLKDEQVYEVMLT----ATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLL  406 (550)
Q Consensus       332 ~l~d~-g~~vd~~~~iiI~TsN~g~~~~~~~~~~----~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I  406 (550)
                       ++|+ |+.+||+|+++|||||.|...+......    .......+.++.+|+|+|++|+|.+|.|.   ||+.+++.+|
T Consensus       150 -ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~---~l~~~~~~~I  225 (315)
T d1r6bx3         150 -LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFD---HLSTDVIHQV  225 (315)
T ss_dssp             -EEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECC---CCCHHHHHHH
T ss_pred             -ecCCCCCccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhccc---chhhhHHHHH
Confidence             9999 9999999999999999998776543311    12345556778899999999999999999   9999999999


Q ss_pred             HHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc---hhhHHHHHhhhhcCCCccccccch
Q 036633          407 REWACEETKRRNNDSKAVIVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ---RPSADHVIDKFLRDAGYNHQSKEE  481 (550)
Q Consensus       407 ~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~---~~la~~~l~~~~~~~~~~~i~~~~  481 (550)
                      +...+.++..++..+++ .+.++++++++|++.+| +.+||  |+|+|+|++   +|||+.++.+.+..+..+.|++..
T Consensus       226 ~~~~l~~~~~~l~~~~i-~l~~~~~a~~~l~~~~yd~~~Ga--R~L~r~Ie~~i~~~la~~il~~~~~~g~~i~V~~~~  301 (315)
T d1r6bx3         226 VDKFIVELQVQLDQKGV-SLEVSQEARNWLAEKGYDRAMGA--RPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDK  301 (315)
T ss_dssp             HHHHHHHHHHHHHHTTE-EEEECHHHHHHHHHHHCBTTTBT--TTHHHHHHHHHTHHHHHHHHHSTTTTCEEEEEEEEG
T ss_pred             HHHHHHHHHHHHHhcCc-chhhHHHHHHHHHHhCCCCCCCh--hhHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEEEEC
Confidence            99999999999999999 99999999999999999 99999  999999999   999999999999988888887664

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=100.00  E-value=6.3e-41  Score=347.32  Aligned_cols=269  Identities=20%  Similarity=0.195  Sum_probs=197.4

Q ss_pred             HHHhhhhcCcccCcHHHHHHHHHHHhcc------------------hhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHH
Q 036633          198 MRVQGRLKKRVFGQNDAIDVIFEALTKP------------------KAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAI  258 (550)
Q Consensus       198 ~~l~~~L~~~viGQ~~ai~~i~~~l~~~------------------~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~l  258 (550)
                      ..+.+.|+++||||++|++.|+.+++..                  ...++|+.++++| ++|||+||||||||++|++|
T Consensus         9 ~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~L   88 (364)
T d1um8a_           9 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTL   88 (364)
T ss_dssp             HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHH
T ss_pred             HHHHHHhCCeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHH
Confidence            4678899999999999999999998521                  0013445567788 99999999999999999999


Q ss_pred             HHHhccCCCCCCceeEEecCCCCchhhhhhHHh-HHHHH-------HHhCCCCeEEeccccc--------------cCHH
Q 036633          259 ANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-SLAAL-------VKKRPYSVVLFDKIEK--------------ANSS  316 (550)
Q Consensus       259 a~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-~lt~a-------l~~~p~~VlllDEIek--------------a~~~  316 (550)
                      |+.+..      +|+++||++|++.+.+....| .+++.       ++..|++||+|||++|              +||+
T Consensus        89 A~~~~~------~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~  162 (364)
T d1um8a_          89 AKHLDI------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEG  162 (364)
T ss_dssp             HHHTTC------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHH
T ss_pred             Hhhccc------ceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchH
Confidence            999866      999999999999877666555 33332       6777899999999999              8999


Q ss_pred             HHHHHHHhhhhccccccccC-CeEeecCCeEEEEeCCC---------ChHHHHHhhhh-------h------h------H
Q 036633          317 ILNLLLKILKTDFNRKATRG-IAAFDLTNTLIIMTSDL---------KDEQVYEVMLT-------A------T------Y  367 (550)
Q Consensus       317 v~~~Ll~~ld~g~~~~l~d~-g~~vd~~~~iiI~TsN~---------g~~~~~~~~~~-------~------~------~  367 (550)
                      |++.||++++.|... ++++ |+.++|+++++++|+|.         +.+........       .      .      .
T Consensus       163 V~~~lLqild~~~~~-~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (364)
T d1um8a_         163 VQQALLKIVEGSLVN-IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHL  241 (364)
T ss_dssp             HHHHHHHHHHCCEEC----------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGG
T ss_pred             HHHhhhhhhcCceec-cCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhcc
Confidence            999999999976447 8888 99999999999999998         22222111100       0      0      1


Q ss_pred             hhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHH----HHHHHHHHhccCCCccccCCHHHHHHHHhcCc-c
Q 036633          368 GRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREW----ACEETKRRNNDSKAVIVCPSTSALVHIASNAA-R  442 (550)
Q Consensus       368 ~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~----~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~-~  442 (550)
                      -...+.++..|.|||++|+|.+|+|+   ||+++++.+|+..    .+.++...+..+|+ .+.|+++++++|++.+| +
T Consensus       242 ~~~~~~~~~~f~PEf~gRi~~iv~f~---~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi-~L~~td~a~~~la~~g~d~  317 (364)
T d1um8a_         242 VQTHDLVTYGLIPELIGRLPVLSTLD---SISLEAMVDILQKPKNALIKQYQQLFKMDEV-DLIFEEEAIKEIAQLALER  317 (364)
T ss_dssp             CCHHHHHHTTCCHHHHTTCCEEEECC---CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTC-EEEECHHHHHHHHHHHHHT
T ss_pred             ccHHHHhhhhhHHHHHHHhcchhhHh---hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCc-EEEECHHHHHHHHHhccCC
Confidence            12246677889999999999999999   9999999999985    55666777888999 99999999999999999 9


Q ss_pred             cCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccc
Q 036633          443 KYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKE  480 (550)
Q Consensus       443 ~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~  480 (550)
                      ++||  |+|+++|++ .|.+.++.....++..+.|+.+
T Consensus       318 ~~GA--R~L~riie~-~l~~~~f~~p~~~~~~v~I~~~  352 (364)
T d1um8a_         318 KTGA--RGLRAIIED-FCLDIMFDLPKLKGSEVRITKD  352 (364)
T ss_dssp             TCTG--GGHHHHHHH-HHHHHHHTGGGGTTSEEEECHH
T ss_pred             CCCc--hHHHHHHHH-HHHHHhccCCCCCCCEEEECHH
Confidence            9999  999999996 7777777766666666666544

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.96  E-value=1.2e-29  Score=257.31  Aligned_cols=248  Identities=18%  Similarity=0.176  Sum_probs=177.4

Q ss_pred             HHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC---CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633          198 MRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR---QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI  273 (550)
Q Consensus       198 ~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~---~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li  273 (550)
                      ..+++.|+++|+||++|++.|+.+++++ .++.++..+.   .| +++||+||||||||++|++||+.++.      +|+
T Consensus         6 ~~i~~~L~~~ViGQd~A~~~l~~av~~~-~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~------~~~   78 (309)
T d1ofha_           6 REIVSELDQHIIGQADAKRAVAIALRNR-WRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA------PFI   78 (309)
T ss_dssp             HHHHHHHHTTCCSCHHHHHHHHHHHHHH-HHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC------CEE
T ss_pred             HHHHHHhcCcccChHHHHHHHHHHHHHH-HHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhcccc------chh
Confidence            4677889999999999999999999642 1156666554   35 89999999999999999999999988      999


Q ss_pred             EEecCCCCchhhhhhHHhHHHHHHHh---------CCCCeEEeccccccCHH------------HHHHHHHhhhhccccc
Q 036633          274 HFDMGNYTELESIKHFFDSLAALVKK---------RPYSVVLFDKIEKANSS------------ILNLLLKILKTDFNRK  332 (550)
Q Consensus       274 ~id~s~~~~~~~~s~liG~lt~al~~---------~p~~VlllDEIeka~~~------------v~~~Ll~~ld~g~~~~  332 (550)
                      ++||++|++.+.+..+.|.....+-.         ++.+|||||||||++|.            +++.||+.+|..  . 
T Consensus        79 ~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~--~-  155 (309)
T d1ofha_          79 KVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS--T-  155 (309)
T ss_dssp             EEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCC--E-
T ss_pred             cccccccccceeEeeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCC--E-
Confidence            99999999988876666522221111         12389999999999864            677788888654  3 


Q ss_pred             cccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633          333 ATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACE  412 (550)
Q Consensus       333 l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~  412 (550)
                      +.+....++++|.++|+|.+.....                 ...|.|+|++|++.++.|.   +++.+++.+|+.....
T Consensus       156 ~~~~~~~i~~s~ilfi~~ga~~~~~-----------------~~~~~p~l~~R~~~~i~~~---~~~~~~~~~Il~~~~~  215 (309)
T d1ofha_         156 VSTKHGMVKTDHILFIASGAFQVAR-----------------PSDLIPELQGRLPIRVELT---ALSAADFERILTEPHA  215 (309)
T ss_dssp             EEETTEEEECTTCEEEEEECCSSSC-----------------GGGSCHHHHHTCCEEEECC---CCCHHHHHHHHHSSTT
T ss_pred             EecCCeEEEccceeEEeccchhhcC-----------------cccchhhhhhhhheeeecc---CCCHHHHHHHHHHHHH
Confidence            3333455677777777764321100                 2468999999999999999   9999999999866433


Q ss_pred             HH----HHHhccCCCccccCCHHHHHHHHhcC-----c-ccCCCcccHHHHHHcchhhHHHHHhhhhcCCCcccccc
Q 036633          413 ET----KRRNNDSKAVIVCPSTSALVHIASNA-----A-RKYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSK  479 (550)
Q Consensus       413 ~~----~~~l~~~~~~~l~~~~~a~~~L~~~~-----~-~~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~  479 (550)
                      .+    .......+. .+.+++.+....+...     + .++|+  |+|++++++ .+.+..+......+..+.++.
T Consensus       216 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Ga--R~L~~~ie~-i~~~~~~~~~~~~~~~v~i~~  288 (309)
T d1ofha_         216 SLTEQYKALMATEGV-NIAFTTDAVKKIAEAAFRVNEKTENIGA--RRLHTVMER-LMDKISFSASDMNGQTVNIDA  288 (309)
T ss_dssp             CHHHHHHHHHHHTTC-EEEECHHHHHHHHHHHHHHHHHSCCCTT--HHHHHHHHH-HSHHHHHHGGGCTTCEEEECH
T ss_pred             HHHHHHHHHHhhcCC-ccccchHHHHHHHHHHHHHhhcchhcCc--hHHHHHHHH-HHHHHHccccccCCCEEEECH
Confidence            22    223334667 7888998877765533     2 46899  999999996 333433433333444444433

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=2.6e-29  Score=260.97  Aligned_cols=173  Identities=24%  Similarity=0.307  Sum_probs=154.7

Q ss_pred             hhhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCCchHHHHHHHH
Q 036633            4 HKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDKYQKELDKHKY   80 (550)
Q Consensus         4 ~~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~~~~~l~~l~~   80 (550)
                      ...|..||++++++||.||||.|+|+||.+||+||+|  |||+|+||||||||||+   +++++..++|   ++|+.+++
T Consensus       186 ~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~r--yi~~r~~PdKAidlld~a~a~~~i~~~s~P---~el~~ler  260 (387)
T d1qvra2         186 VEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR--YITERRLPDKAIDLIDEAAARLRMALESAP---EEIDALER  260 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH--HCCSSCTHHHHHHHHHHHHHHHHHTTTTHH---HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhccc--ccccccChhhHHHHHHHHHHHHHhhccCCc---HHHHHHHH
Confidence            3579999999999999999999999999999999999  99999999999999999   7899999999   99999999


Q ss_pred             HHHHHHHHHHHHhhccCCchhhhhhHHHHHHHH---HHHHHHHHHHHH--------H-HHHHHHHHHHHhHHHhhhhccH
Q 036633           81 FLRRAVVEYEQLVKEDTDHSSRSFWLRQIDNEL---KDAFFELVSFVK--------L-RMQVEYDDFVSCVHDAKRVKDY  148 (550)
Q Consensus        81 ~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~l~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~  148 (550)
                      ++.+++.|..++.++ .+..+..+ +..+++++   +.++..+.++|+        . .++++++.++.+++.+++.+|+
T Consensus       261 ~I~qLe~E~~aL~ke-~d~~s~~r-l~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~le~A~r~gd~  338 (387)
T d1qvra2         261 KKLQLEIEREALKKE-KDPDSQER-LKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDL  338 (387)
T ss_dssp             HHHHHHHHHHHHSSC-SSHHHHSC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCH
T ss_pred             HHHHHHHHHHHHHhc-cchHHHHH-HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            999999999999999 77777777 78887777   778899999997        2 7788889999999999999999


Q ss_pred             HHHHH-------HHHHHHhhhhc-------CCCccCHHHHHHHHHHHhC
Q 036633          149 SKILD-------QIDARVHGKFK-------EKLAVDVEEIAEVASKLTG  183 (550)
Q Consensus       149 ~~~~~-------~~~~~~~~~~~-------~~~~v~~~~i~~v~~~~~g  183 (550)
                      +++++       .+++++.++..       .+..|++++|++|||+|||
T Consensus       339 e~AaeL~y~~ip~le~el~~l~~~~~~~~lvr~~VteedIA~VVSrWTG  387 (387)
T d1qvra2         339 NRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTG  387 (387)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSS
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHhcCCCCCcCccCHHHHHHHHHhhhC
Confidence            99876       56666655432       1678999999999999998

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.90  E-value=2.5e-23  Score=203.65  Aligned_cols=214  Identities=15%  Similarity=0.163  Sum_probs=171.4

Q ss_pred             cccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhh
Q 036633          207 RVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESI  286 (550)
Q Consensus       207 ~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~  286 (550)
                      .+|||+.+++++...+.+.         ...+.++++.||+|||||.+|++|+.....   ...+++.++|+.+......
T Consensus         1 ~~v~~S~~~~~~~~~~~~~---------a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~---~~~~~~~~~~~~~~~~~~~   68 (247)
T d1ny5a2           1 EYVFESPKMKEILEKIKKI---------SCAECPVLITGESGVGKEVVARLIHKLSDR---SKEPFVALNVASIPRDIFE   68 (247)
T ss_dssp             CCCCCSHHHHHHHHHHHHH---------TTCCSCEEEECSTTSSHHHHHHHHHHHSTT---TTSCEEEEETTTSCHHHHH
T ss_pred             CeEecCHHHHHHHHHHHHH---------hCCCCCEEEECCCCcCHHHHHHHHHHhcCC---cccccccchhhhhhhcccH
Confidence            3799999999999999876         112257899999999999999999999888   8889999999999988888


Q ss_pred             hhHHh----HHH-------HHHHhCCCCeEEeccccccCHHHHHHHHHhhhhcccccccc-CCeEeecCCeEEEEeCCCC
Q 036633          287 KHFFD----SLA-------ALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATR-GIAAFDLTNTLIIMTSDLK  354 (550)
Q Consensus       287 s~liG----~lt-------~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d-~g~~vd~~~~iiI~TsN~g  354 (550)
                      +.++|    .++       +.+....+++|||||||.+++..|..|+++++++  . +.. ++......++.+|+|||.+
T Consensus        69 ~~lfg~~~~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~--~-~~~~~~~~~~~~~~RlI~~s~~~  145 (247)
T d1ny5a2          69 AELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESG--K-FYRLGGRKEIEVNVRILAATNRN  145 (247)
T ss_dssp             HHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHS--E-ECCBTCCSBEECCCEEEEEESSC
T ss_pred             HHhcCcccCCcCCcccccCCHHHccCCCEEEEeChHhCCHHHHHHHHHHHHhC--C-EEECCCCCceecCeEEEEecCCC
Confidence            88887    121       2345566789999999999999999999999998  4 332 2222222356699999987


Q ss_pred             hHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC--HHHHHHHHHHHHHHHHHHhccCCCccccCCHHH
Q 036633          355 DEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL--DTTRLLLREWACEETKRRNNDSKAVIVCPSTSA  432 (550)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~--~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a  432 (550)
                      .+....              ...|+++|++||+.+ .+. .|||.  .+|+..++..++.++..++...   ...+++++
T Consensus       146 l~~l~~--------------~~~f~~~L~~~l~~~-~i~-lPpLreR~~Di~~l~~~~l~~~~~~~~~~---~~~ls~~a  206 (247)
T d1ny5a2         146 IKELVK--------------EGKFREDLYYRLGVI-EIE-IPPLRERKEDIIPLANHFLKKFSRKYAKE---VEGFTKSA  206 (247)
T ss_dssp             HHHHHH--------------TTSSCHHHHHHHTTE-EEE-CCCGGGCHHHHHHHHHHHHHHHHHHTTCC---CCEECHHH
T ss_pred             HHHHHH--------------cCCCcHHHHhhcCee-eec-CCChhhchhhHhhhhhhhhhhhhhhcCCC---CCCCCHHH
Confidence            655544              468999999999644 333 23885  5899999999999988876544   34789999


Q ss_pred             HHHHHhcCcccCCCcccHHHHHHcc
Q 036633          433 LVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       433 ~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++.|..+.||  | |+|.|++++++
T Consensus       207 l~~L~~~~WP--G-Nl~EL~~~l~~  228 (247)
T d1ny5a2         207 QELLLSYPWY--G-NVRELKNVIER  228 (247)
T ss_dssp             HHHHHHSCCT--T-HHHHHHHHHHH
T ss_pred             HHHHHhCCCC--C-HHHHHHHHHHH
Confidence            9999999887  8 99999999996

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.86  E-value=2.2e-21  Score=204.48  Aligned_cols=251  Identities=18%  Similarity=0.177  Sum_probs=178.8

Q ss_pred             HHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcC----CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCcee
Q 036633          198 MRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRR----QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLI  273 (550)
Q Consensus       198 ~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~----~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li  273 (550)
                      ..+.++|++.||||++|++.++-+++.+.- |..+..+.    .|.++||+||||||||+||+.||+.+.-      ||+
T Consensus         6 ~~i~~~Ld~yVvGQ~~AKk~lsvav~nhyr-R~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~V------PFv   78 (443)
T d1g41a_           6 REIVSELDQHIIGQADAKRAVAIALRNRWR-RMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA------PFI   78 (443)
T ss_dssp             HHHHHHHHTTCCSCHHHHHHHHHHHHHHHH-HHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC------CEE
T ss_pred             HHHHHHhcCcccCcHHHHHHHHHHHHHHHH-HhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCC------CEE
Confidence            367788999999999999999999965410 12222222    2479999999999999999999999987      999


Q ss_pred             EEecCCCCchhhhh----hHHhHHHH------------------------------------------------------
Q 036633          274 HFDMGNYTELESIK----HFFDSLAA------------------------------------------------------  295 (550)
Q Consensus       274 ~id~s~~~~~~~~s----~liG~lt~------------------------------------------------------  295 (550)
                      ..||+.|++.+.+.    .++..|.+                                                      
T Consensus        79 ~~daT~fTeaGYvG~DVesii~~L~~~a~~~v~~~e~~~V~~~~~~~~~e~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~  158 (443)
T d1g41a_          79 KVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAF  158 (443)
T ss_dssp             EEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC---------------------------------------
T ss_pred             EeecceeeecceeecchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhHHH
Confidence            99999999875321    11110000                                                      


Q ss_pred             --------------------------------------------------------------------------------
Q 036633          296 --------------------------------------------------------------------------------  295 (550)
Q Consensus       296 --------------------------------------------------------------------------------  295 (550)
                                                                                                      
T Consensus       159 ~~~L~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~  238 (443)
T d1g41a_         159 RKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEE  238 (443)
T ss_dssp             ------------------------------------------------------------------CCGGGSCSSCCHHH
T ss_pred             HHHHhcCCccccccccccccCCCcccccccccchhhhhhhHHHhhhccCCccccceeeehHHHHHHHHHHHhhhccchhH
Confidence                                                                                            


Q ss_pred             ----HHH-hCCCCeEEeccccccC------------HHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHH
Q 036633          296 ----LVK-KRPYSVVLFDKIEKAN------------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQV  358 (550)
Q Consensus       296 ----al~-~~p~~VlllDEIeka~------------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~  358 (550)
                          ++. -...+++|+||+++..            ..++..++.+++..  . +......++..+..+|+++-...-. 
T Consensus       239 i~~~ai~~v~~~~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~--~-v~~~~~~~~~~~~l~i~~~~~~~~~-  314 (443)
T d1g41a_         239 LKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGS--T-VSTKHGMVKTDHILFIASGAFQVAR-  314 (443)
T ss_dssp             HHHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCC--E-EEETTEEEECTTCEEEEEECCSSCC-
T ss_pred             HHHHHHHHHhccCccccchhhhhhhcccCCCCCcccchhhhhhhhhcccc--c-cccccccccccchhhccccchhhcc-
Confidence                000 0012478889988742            45788888888766  3 3333335566666676654332100 


Q ss_pred             HHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHH----HHHHHHHHHhccCCCccccCCHHHHH
Q 036633          359 YEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLRE----WACEETKRRNNDSKAVIVCPSTSALV  434 (550)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~----~~l~~~~~~l~~~~~~~l~~~~~a~~  434 (550)
                                      ...|-|||.+|++.++.|.   ||+.+++.+|+.    ..+.++...+...|+ .|.|++++++
T Consensus       315 ----------------~~gliPEliGRlPi~v~L~---~L~~~dL~rILtEPknsLikQy~~lf~~~gv-~L~ft~~al~  374 (443)
T d1g41a_         315 ----------------PSDLIPELQGRLPIRVELT---ALSAADFERILTEPHASLTEQYKALMATEGV-NIAFTTDAVK  374 (443)
T ss_dssp             ----------------GGGSCHHHHTTCCEEEECC---CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTC-EEEECHHHHH
T ss_pred             ----------------cccchhhhccceEEEEEcc---CccHHHHHHHHHhhhhhHHHHHHHHHhhcCc-EEEEcHHHHH
Confidence                            1357899999999999999   999999999994    467777777788899 9999999999


Q ss_pred             HHHhcCc-c-----cCCCcccHHHHHHcchhhHHHHHhhhhcCCCccccccchh
Q 036633          435 HIASNAA-R-----KYGQNGEGLKRWMDQRPSADHVIDKFLRDAGYNHQSKEET  482 (550)
Q Consensus       435 ~L~~~~~-~-----~~GaN~R~L~~~i~~~~la~~~l~~~~~~~~~~~i~~~~~  482 (550)
                      .|++.++ .     +.||  |.|+.++++ .|.+..+...-.++.++.|+-...
T Consensus       375 ~iA~~A~~~n~~~~~~GA--R~Lr~i~E~-~l~~~~f~~p~~~~~~v~Id~~~v  425 (443)
T d1g41a_         375 KIAEAAFRVNEKTENIGA--RRLHTVMER-LMDKISFSASDMNGQTVNIDAAYV  425 (443)
T ss_dssp             HHHHHHHHHHHHSCCCGG--GHHHHHHHH-HHHHHHHHGGGCTTCEEEECHHHH
T ss_pred             HHHHHHHHhhhhcccCCc--hHHHHHHHH-HHHHHhccCCCCCCCEEEECHHHH
Confidence            9998776 3     5799  999999996 777777776655566666655544

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=3e-19  Score=172.57  Aligned_cols=194  Identities=19%  Similarity=0.172  Sum_probs=144.5

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      +.|+||+++++.+..++...   ..    .+++ .++||+||||||||++|++||+.+..      ++..++.+......
T Consensus         9 ~divGqe~~~~~l~~~i~~~---~~----~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~------~~~~~~~~~~~~~~   75 (238)
T d1in4a2           9 DEFIGQENVKKKLSLALEAA---KM----RGEVLDHVLLAGPPGLGKTTLAHIIASELQT------NIHVTSGPVLVKQG   75 (238)
T ss_dssp             GGCCSCHHHHHHHHHHHHHH---HH----HTCCCCCEEEESSTTSSHHHHHHHHHHHHTC------CEEEEETTTCCSHH
T ss_pred             HHcCChHHHHHHHHHHHHHH---Hh----cCCCCCeEEEECCCCCcHHHHHHHHHhccCC------CcccccCcccccHH
Confidence            46899999999999988755   21    1233 78999999999999999999999987      78888877776544


Q ss_pred             hhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccC------CeEeecCCeEEEEeCCCChHHH
Q 036633          285 SIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG------IAAFDLTNTLIIMTSDLKDEQV  358 (550)
Q Consensus       285 ~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~------g~~vd~~~~iiI~TsN~g~~~~  358 (550)
                      .....   +.   .....+++++||++++++.+++.++..++.+.+. ...+      .......++++|++||..    
T Consensus        76 ~~~~~---~~---~~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~I~at~~~----  144 (238)
T d1in4a2          76 DMAAI---LT---SLERGDVLFIDEIHRLNKAVEELLYSAIEDFQID-IMIGKGPSAKSIRIDIQPFTLVGATTRS----  144 (238)
T ss_dssp             HHHHH---HH---HCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCC-C---------------CCCEEEEEESCG----
T ss_pred             HHHHH---HH---hhccCCchHHHHHHHhhhHHHhhcccceeeeeee-eeecCcccccccccCCCCeEEEEecCCC----
Confidence            33221   11   2345689999999999999999999999988322 1111      112345678899988864    


Q ss_pred             HHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHh
Q 036633          359 YEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIAS  438 (550)
Q Consensus       359 ~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~  438 (550)
                                       ....+.+++|++.++.|.   +++.+++..++...+..       .   .+.+++++++.++.
T Consensus       145 -----------------~~~~~~~~~r~~~~~~~~---~~~~~~~~~~l~~~~~~-------~---~~~~~~~~l~~i~~  194 (238)
T d1in4a2         145 -----------------GLLSSPLRSRFGIILELD---FYTVKELKEIIKRAASL-------M---DVEIEDAAAEMIAK  194 (238)
T ss_dssp             -----------------GGSCHHHHTTCSEEEECC---CCCHHHHHHHHHHHHHH-------T---TCCBCHHHHHHHHH
T ss_pred             -----------------ccccccceeeeeEEEEec---CCCHHHHHHHHHHhhhh-------c---cchhhHHHHHHHHH
Confidence                             356778999998889999   99999999998876643       4   34789999999998


Q ss_pred             cCcccCCCcccHHHHHHcc
Q 036633          439 NAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       439 ~~~~~~GaN~R~L~~~i~~  457 (550)
                      .+.   | ++|.+-++++.
T Consensus       195 ~s~---g-d~R~ai~~l~~  209 (238)
T d1in4a2         195 RSR---G-TPRIAIRLTKR  209 (238)
T ss_dssp             TST---T-CHHHHHHHHHH
T ss_pred             hCC---C-CHHHHHHHHHH
Confidence            654   5 66877777764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.78  E-value=8e-19  Score=168.91  Aligned_cols=188  Identities=16%  Similarity=0.243  Sum_probs=139.9

Q ss_pred             cCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          205 KKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       205 ~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      -..++||+++++.+..++...           ++.++||+||||||||++|+++|+.+++.. ...+++.+|++......
T Consensus        23 ~~diig~~~~~~~l~~~i~~~-----------~~~~lll~Gp~G~GKTtla~~iak~l~~~~-~~~~~~e~n~s~~~~~~   90 (231)
T d1iqpa2          23 LDDIVGQEHIVKRLKHYVKTG-----------SMPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDERGIN   90 (231)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHT-----------CCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHHHHH
T ss_pred             HHHccCcHHHHHHHHHHHHcC-----------CCCeEEEECCCCCcHHHHHHHHHHHHHhcc-cCCCeeEEecCcccchh
Confidence            367999999999998888755           345799999999999999999999886510 12356778877654332


Q ss_pred             hhhhHHhHHH--HHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhh
Q 036633          285 SIKHFFDSLA--ALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVM  362 (550)
Q Consensus       285 ~~s~liG~lt--~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~  362 (550)
                      .....+....  .......+.|+++||++.++.+.++.|+.+++.+  .           .++++|+++|..        
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~--~-----------~~~~~i~~~n~~--------  149 (231)
T d1iqpa2          91 VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF--S-----------SNVRFILSCNYS--------  149 (231)
T ss_dssp             TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT--T-----------TTEEEEEEESCG--------
T ss_pred             HHHHHHHHHHhhhhccCCCceEEeehhhhhcchhHHHHHhhhcccC--C-----------cceEEEeccCCh--------
Confidence            2222221111  0112234579999999999999999999999988  5           567889998863        


Q ss_pred             hhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcc
Q 036633          363 LTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAAR  442 (550)
Q Consensus       363 ~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~  442 (550)
                                   ....+.+.+|+ .++.|.   |++.+++..++...+.       ..++   .+++++++.|++.+. 
T Consensus       150 -------------~~i~~~l~sR~-~~i~~~---~~~~~~~~~~l~~~~~-------~e~i---~i~~~~l~~I~~~~~-  201 (231)
T d1iqpa2         150 -------------SKIIEPIQSRC-AIFRFR---PLRDEDIAKRLRYIAE-------NEGL---ELTEEGLQAILYIAE-  201 (231)
T ss_dssp             -------------GGSCHHHHHTE-EEEECC---CCCHHHHHHHHHHHHH-------TTTC---EECHHHHHHHHHHHT-
T ss_pred             -------------hhchHhHhCcc-cccccc---ccchhhHHHHHHHHHH-------HhCC---CCCHHHHHHHHHHcC-
Confidence                         34567799999 789999   9999999999987774       2544   789999999998643 


Q ss_pred             cCCCcccHHHHHHc
Q 036633          443 KYGQNGEGLKRWMD  456 (550)
Q Consensus       443 ~~GaN~R~L~~~i~  456 (550)
                        | ++|.+-+.++
T Consensus       202 --g-diR~ai~~Lq  212 (231)
T d1iqpa2         202 --G-DMRRAINILQ  212 (231)
T ss_dssp             --T-CHHHHHHHHH
T ss_pred             --C-CHHHHHHHHH
Confidence              5 6676655555

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=9.5e-19  Score=167.80  Aligned_cols=185  Identities=17%  Similarity=0.288  Sum_probs=138.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      +.++||+++++.+..++...           ++.++||+||||||||++|+++|+.++..+ ....++.++++.......
T Consensus        14 ~divg~~~~~~~L~~~i~~~-----------~~~~lLl~Gp~G~GKttl~~~la~~l~~~~-~~~~~~e~~~~~~~~~~~   81 (227)
T d1sxjc2          14 DEVYGQNEVITTVRKFVDEG-----------KLPHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDDRGIDV   81 (227)
T ss_dssp             GGCCSCHHHHHHHHHHHHTT-----------CCCCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSCCSHHH
T ss_pred             HHccCcHHHHHHHHHHHHcC-----------CCCeEEEECCCCCChhHHHHHHHHHhhcCC-CcceeEEecccccCCeee
Confidence            56999999999998888755           334799999999999999999999987611 112345666666544333


Q ss_pred             hhhHHhHHHHHHHh-----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          286 IKHFFDSLAALVKK-----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       286 ~s~liG~lt~al~~-----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      ....   .......     ..+.|+++||++.+++..++.|+..+++.  .           .++++++++|..      
T Consensus        82 ~~~~---~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~--~-----------~~~~~~~~~~~~------  139 (227)
T d1sxjc2          82 VRNQ---IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY--T-----------KNTRFCVLANYA------  139 (227)
T ss_dssp             HHTH---HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT--T-----------TTEEEEEEESCG------
T ss_pred             eecc---hhhccccccccCCCeEEEEEeccccchhhHHHHHHHHhhhc--c-----------cceeeccccCcH------
Confidence            2221   1222221     23359999999999999999999999987  5           678899988863      


Q ss_pred             hhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcC
Q 036633          361 VMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNA  440 (550)
Q Consensus       361 ~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~  440 (550)
                                     ....+.+.+|| ..+.|.   |++.+++..++...+..       .|+   .+++++++.|++.+
T Consensus       140 ---------------~~i~~~i~sr~-~~i~~~---~~~~~~i~~~l~~I~~~-------e~i---~i~~~~l~~i~~~s  190 (227)
T d1sxjc2         140 ---------------HKLTPALLSQC-TRFRFQ---PLPQEAIERRIANVLVH-------EKL---KLSPNAEKALIELS  190 (227)
T ss_dssp             ---------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHHHT-------TTC---CBCHHHHHHHHHHH
T ss_pred             ---------------HHhHHHHHHHH-hhhccc---ccccccccccccccccc-------ccc---cCCHHHHHHHHHHc
Confidence                           35677899999 799999   99999999988887642       555   78999999999865


Q ss_pred             cccCCCcccHHHHHHcc
Q 036633          441 ARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       441 ~~~~GaN~R~L~~~i~~  457 (550)
                      .   | ++|.+-+.++.
T Consensus       191 ~---G-d~R~ain~Lq~  203 (227)
T d1sxjc2         191 N---G-DMRRVLNVLQS  203 (227)
T ss_dssp             T---T-CHHHHHHHTTT
T ss_pred             C---C-cHHHHHHHHHH
Confidence            4   5 66755555553

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.1e-18  Score=169.24  Aligned_cols=185  Identities=21%  Similarity=0.233  Sum_probs=134.6

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC-CCC---------------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN-DND---------------  269 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~-~~~---------------  269 (550)
                      ..++||+++++.+...+...          +-|.++||+||||+|||++|+++++.++... ...               
T Consensus        12 ~dlig~~~~~~~L~~~i~~~----------~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~   81 (239)
T d1njfa_          12 ADVVGQEHVLTALANGLSLG----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG   81 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHTT----------CCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHT
T ss_pred             HHccChHHHHHHHHHHHHcC----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcC
Confidence            47899999999998888755          1246799999999999999999999987621 000               


Q ss_pred             --CceeEEecCCCCchhhhhhHHhHHHHHHHh----CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecC
Q 036633          270 --NHLIHFDMGNYTELESIKHFFDSLAALVKK----RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       270 --~~li~id~s~~~~~~~~s~liG~lt~al~~----~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                        -.++.+|.+.......+.    .+.+.+..    .++.|++|||+|+++++.|+.|++.++++  .           .
T Consensus        82 ~~~~~~~~~~~~~~~i~~ir----~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~--~-----------~  144 (239)
T d1njfa_          82 RFVDLIEIDAASRTKVEDTR----DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP--P-----------E  144 (239)
T ss_dssp             CCTTEEEEETTCSSSHHHHH----HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC--C-----------T
T ss_pred             CCCeEEEecchhcCCHHHHH----HHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcC--C-----------C
Confidence              024455544332221111    12222222    23459999999999999999999999987  5           6


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      +++||++||..                     ..+.+.+.+|| .++.|.   +++.+++..++...+..       .++
T Consensus       145 ~~~~il~tn~~---------------------~~i~~~i~SRc-~~i~~~---~~~~~~i~~~l~~i~~~-------e~~  192 (239)
T d1njfa_         145 HVKFLLATTDP---------------------QKLPVTILSRC-LQFHLK---ALDVEQIRHQLEHILNE-------EHI  192 (239)
T ss_dssp             TEEEEEEESCG---------------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHHHH-------HTC
T ss_pred             CeEEEEEcCCc---------------------cccChhHhhhh-cccccc---cCcHHHhhhHHHHHHhh-------hcc
Confidence            77889988852                     35678899999 799999   99999999888777653       334


Q ss_pred             ccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633          424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMD  456 (550)
Q Consensus       424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~  456 (550)
                         .+++++++.|+..+.   | |.|.+-+.++
T Consensus       193 ---~~~~~~l~~i~~~s~---G-d~R~ain~l~  218 (239)
T d1njfa_         193 ---AHEPRALQLLARAAE---G-SLRDALSLTD  218 (239)
T ss_dssp             ---CBCHHHHHHHHHHTT---T-CHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHcC---C-CHHHHHHHHH
Confidence               689999999998654   6 6675555554

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=9.7e-18  Score=162.05  Aligned_cols=194  Identities=18%  Similarity=0.144  Sum_probs=140.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      +.||||+++++.+..++...   +.+   ...|.++||+||||||||++|+++|+.++.      ++..++.+.......
T Consensus         9 ddivGq~~~~~~L~~~i~~~---~~~---~~~~~~~Ll~GPpG~GKTtla~~la~~~~~------~~~~~~~~~~~~~~~   76 (239)
T d1ixsb2           9 DEYIGQERLKQKLRVYLEAA---KAR---KEPLEHLLLFGPPGLGKTTLAHVIAHELGV------NLRVTSGPAIEKPGD   76 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHHH---TTS---SSCCCCEEEECCTTSCHHHHHHHHHHHHTC------CEEEEETTTCCSHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHH---Hhc---CCCCCeEEEECCCCCCHHHHHHHHHHHhCC------CeEeccCCccccchh
Confidence            46899999999998888765   221   112378999999999999999999999988      888888877654322


Q ss_pred             hhhHHhHHHHHHHh--CCCCeEEeccccccCHHHHHHHHHhhhhccccccccC------CeEeecCCeEEEEeCCCChHH
Q 036633          286 IKHFFDSLAALVKK--RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRG------IAAFDLTNTLIIMTSDLKDEQ  357 (550)
Q Consensus       286 ~s~liG~lt~al~~--~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~------g~~vd~~~~iiI~TsN~g~~~  357 (550)
                      .       ...+..  ...+|+++||++++++..++.++..++++... ...+      ....+..+.++|+++|..   
T Consensus        77 ~-------~~~~~~~~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~---  145 (239)
T d1ixsb2          77 L-------AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMD-IVIGQGPAARTIRLELPRFTLIGATTRP---  145 (239)
T ss_dssp             H-------HHHHHTTCCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEE-EECSCTTCCCEEEEECCCCEEEEEESCC---
T ss_pred             h-------HHHHHhhccCCCeeeeecccccchhHHHhhhhhhhhhhhh-hhhccchhhhhcccCCCCEEEEeeccCc---
Confidence            2       222222  23479999999999999999999999876211 1111      233455667777777653   


Q ss_pred             HHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHH
Q 036633          358 VYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIA  437 (550)
Q Consensus       358 ~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~  437 (550)
                                        ....++.+.|....+.|.   +++.+++..++...+..       .   .+.+++++++.++
T Consensus       146 ------------------~~~~~~~l~~~~~~~~~~---~~~~~~~~~i~~~~~~~-------~---~i~~~~~~l~~ia  194 (239)
T d1ixsb2         146 ------------------GLITAPLLSRFGIVEHLE---YYTPEELAQGVMRDARL-------L---GVRITEEAALEIG  194 (239)
T ss_dssp             ------------------SSCSCGGGGGCSEEEECC---CCCHHHHHHHHHHHHGG-------G---CCCBCHHHHHHHH
T ss_pred             ------------------ccccchhhcccceeeEee---ccChhhhhHHHHHHHHH-------h---CCccchHHHHHHH
Confidence                              244445566655899999   99999999998876632       3   3488999999999


Q ss_pred             hcCcccCCCcccHHHHHHcc
Q 036633          438 SNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       438 ~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ..+.   | ++|...+.++.
T Consensus       195 ~~s~---g-d~R~a~~~l~~  210 (239)
T d1ixsb2         195 RRSR---G-TMRVAKRLFRR  210 (239)
T ss_dssp             HHTT---S-SHHHHHHHHHH
T ss_pred             HHcC---C-CHHHHHHHHHH
Confidence            8654   5 56766666664

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=2.4e-18  Score=165.55  Aligned_cols=189  Identities=15%  Similarity=0.203  Sum_probs=139.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++||+++++.+..++...           ++.+++|+||||+|||++|+++++.+++..........++++.......
T Consensus        12 ~diig~~~~~~~l~~~i~~~-----------~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (237)
T d1sxjd2          12 DEVTAQDHAVTVLKKTLKSA-----------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI   80 (237)
T ss_dssp             TTCCSCCTTHHHHHHHTTCT-----------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH
T ss_pred             HHccCcHHHHHHHHHHHHcC-----------CCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchH
Confidence            45899999999888777654           3357999999999999999999999854111123567778777765444


Q ss_pred             hhhHHh------------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCC
Q 036633          286 IKHFFD------------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDL  353 (550)
Q Consensus       286 ~s~liG------------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~  353 (550)
                      ....++            ...+.....++.|++|||++.++...++.|+..++..  .           .++++|+++|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~--~-----------~~~~~i~~~~~  147 (237)
T d1sxjd2          81 VREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY--S-----------GVTRFCLICNY  147 (237)
T ss_dssp             HTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT--T-----------TTEEEEEEESC
T ss_pred             HHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccc--c-----------ccccccccccc
Confidence            333332            1122222345569999999999999999999999988  5           56677877775


Q ss_pred             ChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHH
Q 036633          354 KDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSAL  433 (550)
Q Consensus       354 g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~  433 (550)
                      .                     ....+.+.+|+ .+|.|.   |++.+++..++...+.       ..++   .++++++
T Consensus       148 ~---------------------~~~~~~l~sr~-~~i~f~---~~~~~~~~~~L~~i~~-------~e~i---~i~~~~l  192 (237)
T d1sxjd2         148 V---------------------TRIIDPLASQC-SKFRFK---ALDASNAIDRLRFISE-------QENV---KCDDGVL  192 (237)
T ss_dssp             G---------------------GGSCHHHHHHS-EEEECC---CCCHHHHHHHHHHHHH-------TTTC---CCCHHHH
T ss_pred             c---------------------ccccccccchh-hhhccc---cccccccchhhhhhhh-------hhcC---cCCHHHH
Confidence            3                     24557799999 799999   9999999999887663       2544   7899999


Q ss_pred             HHHHhcCcccCCCcccHHHHHHcc
Q 036633          434 VHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       434 ~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      ++|++.+.   | +.|.+-+.++.
T Consensus       193 ~~ia~~s~---g-d~R~ai~~L~~  212 (237)
T d1sxjd2         193 ERILDISA---G-DLRRGITLLQS  212 (237)
T ss_dssp             HHHHHHTS---S-CHHHHHHHHHH
T ss_pred             HHHHHHcC---C-CHHHHHHHHHH
Confidence            99998653   5 55765555554

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=6.6e-18  Score=165.41  Aligned_cols=195  Identities=19%  Similarity=0.228  Sum_probs=132.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCC--cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCch
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSS--RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~--~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~  283 (550)
                      +.|+|.+.+++.|.+.+.-. .....+..  ...|..+||+||||||||++|++||+.+..      +++.++++.+...
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~-~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~------~~~~i~~~~l~~~   84 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV------PFFTISGSDFVEM   84 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHH-HCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC------CEEEECSCSSTTS
T ss_pred             HHHhchHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCC------CEEEEEhHHhhhc
Confidence            57999999998887655321 00111111  113478999999999999999999999977      9999999998643


Q ss_pred             h---hhhhHHhHHHHHHHhCCCCeEEeccccccC-----------H---HHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          284 E---SIKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------S---SILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       284 ~---~~s~liG~lt~al~~~p~~VlllDEIeka~-----------~---~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                      .   +...+- .+.+..+.+..+||||||||.+.           +   .+.+.|+..++.-  .   +      -++++
T Consensus        85 ~~g~~~~~l~-~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~--~---~------~~~v~  152 (256)
T d1lv7a_          85 FVGVGASRVR-DMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF--E---G------NEGII  152 (256)
T ss_dssp             CCCCCHHHHH-HHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC--C---S------SSCEE
T ss_pred             chhHHHHHHH-HHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCC--C---C------CCCEE
Confidence            1   111111 22233344444899999998742           1   3567788888743  2   1      14678


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV  424 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~  424 (550)
                      ||+|||..                     ..++|+|+  +|+|..|.|.   +++.++...|+...+.+       .   
T Consensus       153 vIatTn~~---------------------~~ld~al~R~gRfd~~i~i~---~P~~~~R~~il~~~l~~-------~---  198 (256)
T d1lv7a_         153 VIAATNRP---------------------DVLDPALLRPGRFDRQVVVG---LPDVRGREQILKVHMRR-------V---  198 (256)
T ss_dssp             EEEEESCT---------------------TTSCGGGGSTTSSCEEEECC---CCCHHHHHHHHHHHHTT-------S---
T ss_pred             EEEeCCCc---------------------ccCCHhHcCCCCCCEEEECC---CcCHHHHHHHHHHhccC-------C---
Confidence            99999974                     46789998  4999999999   88999999999877632       2   


Q ss_pred             cccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .+. .+.....|+... .  |.++++|+++++.
T Consensus       199 ~~~-~~~~~~~la~~t-~--G~s~adi~~l~~~  227 (256)
T d1lv7a_         199 PLA-PDIDAAIIARGT-P--GFSGADLANLVNE  227 (256)
T ss_dssp             CBC-TTCCHHHHHHTC-T--TCCHHHHHHHHHH
T ss_pred             CcC-cccCHHHHHHhC-C--CCCHHHHHHHHHH
Confidence            222 122345666643 2  3355999999986

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=9.2e-18  Score=160.79  Aligned_cols=184  Identities=12%  Similarity=0.175  Sum_probs=137.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ..++||+++++.+..++...           +..++||+||||||||++|+.+|+.+.... ....++.+|+++......
T Consensus        15 ~d~ig~~~~~~~L~~~~~~~-----------~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~-~~~~~~~~n~~~~~~~~~   82 (224)
T d1sxjb2          15 SDIVGNKETIDRLQQIAKDG-----------NMPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDRGIDV   82 (224)
T ss_dssp             GGCCSCTHHHHHHHHHHHSC-----------CCCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCCSHHH
T ss_pred             HHhcCCHHHHHHHHHHHHcC-----------CCCeEEEECCCCCCchhhHHHHHHHHhccc-cccccccccccccCCcee
Confidence            56899999999998888765           334799999999999999999999987610 112366777776654333


Q ss_pred             hhhHHhHHHHHHHh------CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633          286 IKHFFDSLAALVKK------RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY  359 (550)
Q Consensus       286 ~s~liG~lt~al~~------~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~  359 (550)
                      ...   .+......      ..+.|+++||++.++...++.|+..++..  .           .++++++++|.-     
T Consensus        83 i~~---~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~--~-----------~~~~~i~~~~~~-----  141 (224)
T d1sxjb2          83 VRN---QIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY--S-----------NSTRFAFACNQS-----  141 (224)
T ss_dssp             HHT---HHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT--T-----------TTEEEEEEESCG-----
T ss_pred             hhh---HHHHHHHhhccCCCcceEEEEEecccccchhHHHHHhhhcccc--c-----------cceeeeeccCch-----
Confidence            222   22222221      23459999999999999999999999988  5           567788887752     


Q ss_pred             HhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhc
Q 036633          360 EVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASN  439 (550)
Q Consensus       360 ~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~  439 (550)
                                      ....+.+.+|| .+|.|.   |++.+++..++...+.+       .|+   .+++++++.|+..
T Consensus       142 ----------------~~i~~~l~sr~-~~i~~~---~~~~~~i~~~l~~i~~~-------e~~---~i~~~~l~~I~~~  191 (224)
T d1sxjb2         142 ----------------NKIIEPLQSQC-AILRYS---KLSDEDVLKRLLQIIKL-------EDV---KYTNDGLEAIIFT  191 (224)
T ss_dssp             ----------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHHHHHH-------HTC---CBCHHHHHHHHHH
T ss_pred             ----------------hhhhhHHHHHH-HHhhhc---ccchhhhHHHHHHHHHh-------ccc---CCCHHHHHHHHHH
Confidence                            34567899999 789999   99999999998887754       344   7899999999986


Q ss_pred             CcccCCCcccHHHHHHc
Q 036633          440 AARKYGQNGEGLKRWMD  456 (550)
Q Consensus       440 ~~~~~GaN~R~L~~~i~  456 (550)
                      +.   | +.|.+-+.++
T Consensus       192 s~---G-d~R~ai~~Lq  204 (224)
T d1sxjb2         192 AE---G-DMRQAINNLQ  204 (224)
T ss_dssp             HT---T-CHHHHHHHHH
T ss_pred             cC---C-cHHHHHHHHH
Confidence            53   5 5565555544

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=4.6e-18  Score=165.73  Aligned_cols=194  Identities=21%  Similarity=0.252  Sum_probs=129.3

Q ss_pred             CcccCcHHHHHHHHHHHhcc----hhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKP----KAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~----~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      ..|+|.+.+++.|.+.+.-.    +..+.|..   .|..+||+||||||||++|++||+.+..      +++.++++.+.
T Consensus         9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~---~~~giLl~GppGtGKT~la~aia~~~~~------~~~~i~~~~l~   79 (247)
T d1ixza_           9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR---IPKGVLLVGPPGVGKTHLARAVAGEARV------PFITASGSDFV   79 (247)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCC---CCSEEEEECCTTSSHHHHHHHHHHHTTC------CEEEEEHHHHH
T ss_pred             HHHccHHHHHHHHHHHHHHHHCHHHHHHcCCC---CCceEEEecCCCCChhHHHHHHHHHcCC------CEEEEEhHHhh
Confidence            36899999988876654211    00122332   2368999999999999999999999877      99999998764


Q ss_pred             chhh--hhhHHhHHHHHHHhCCCCeEEeccccccC-----------H---HHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633          282 ELES--IKHFFDSLAALVKKRPYSVVLFDKIEKAN-----------S---SILNLLLKILKTDFNRKATRGIAAFDLTNT  345 (550)
Q Consensus       282 ~~~~--~s~liG~lt~al~~~p~~VlllDEIeka~-----------~---~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~  345 (550)
                      ....  ....+-.+....+....+||||||||.+.           .   .+.+.|+..++.-  .   .      -.++
T Consensus        80 ~~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~--~---~------~~~v  148 (247)
T d1ixza_          80 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF--E---K------DTAI  148 (247)
T ss_dssp             HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC--C---T------TCCE
T ss_pred             hccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCC--C---C------CCCE
Confidence            2210  00111122222333334899999998652           1   2567788777633  2   1      1457


Q ss_pred             EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Q 036633          346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKA  423 (550)
Q Consensus       346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~  423 (550)
                      +||+|||..                     ..++|+|+  +|||.+|.|.   +++.++...|++.++..       ...
T Consensus       149 ivi~tTn~~---------------------~~ld~al~R~~Rf~~~i~~~---~P~~~eR~~il~~~l~~-------~~~  197 (247)
T d1ixza_         149 VVMAATNRP---------------------DILDPALLRPGRFDRQIAID---APDVKGREQILRIHARG-------KPL  197 (247)
T ss_dssp             EEEEEESCG---------------------GGSCGGGGSTTSSCEEEECC---SCCHHHHHHHHHHHHTT-------SCB
T ss_pred             EEEEeCCCc---------------------cccCHhHcCCCCCcEEEEEC---CcCHHHHHHHHHHHhcc-------cCC
Confidence            888999963                     46788888  6999999999   89999999999887743       222


Q ss_pred             ccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          424 VIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       424 ~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                       .   .+..++.|+..+ .  |.++++|+++++.
T Consensus       198 -~---~~~~~~~la~~t-~--g~s~~di~~lv~~  224 (247)
T d1ixza_         198 -A---EDVDLALLAKRT-P--GFVGADLENLLNE  224 (247)
T ss_dssp             -C---TTCCHHHHHHTC-T--TCCHHHHHHHHHH
T ss_pred             -c---cccCHHHHHHHC-C--CCCHHHHHHHHHH
Confidence             1   112256677643 2  3355899999886

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.6e-16  Score=155.77  Aligned_cols=193  Identities=18%  Similarity=0.262  Sum_probs=132.5

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..|.|++.+++.|.+.+...+.     .+.|+.   .|..+||+||||||||++|+++|..+..      +++.++++.+
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~---~~~giLL~GppGtGKT~l~~ala~~~~~------~~~~i~~~~l   74 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVK---PPRGILLYGPPGTGKTLIARAVANETGA------FFFLINGPEI   74 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCC---CCCEEEEECCTTSSHHHHHHHHHHHTTC------EEEEECHHHH
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCC---CCceeEEecCCCCCchHHHHHHHHHhCC------eEEEEEchhh
Confidence            4689999999999887643210     122332   2357999999999999999999999877      9999998876


Q ss_pred             Cchhh---hhhHHhHHHHHHHhCCCCeEEeccccccCH-----------HHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          281 TELES---IKHFFDSLAALVKKRPYSVVLFDKIEKANS-----------SILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       281 ~~~~~---~s~liG~lt~al~~~p~~VlllDEIeka~~-----------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                      .....   ...+-..+..+-...| +||||||+|.+-+           .+...++..++..  .         .-.+++
T Consensus        75 ~~~~~g~~~~~l~~~f~~A~~~~p-~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~--~---------~~~~vl  142 (258)
T d1e32a2          75 MSKLAGESESNLRKAFEEAEKNAP-AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL--K---------QRAHVI  142 (258)
T ss_dssp             TTSCTTHHHHHHHHHHHHHHHTCS-EEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTC--C---------CSSCEE
T ss_pred             cccccccHHHHHHHHHHHHHhcCC-eEEEehhhhhhccCCCCCCCchHHHHHHHhccccccc--c---------ccCCcc
Confidence            43211   1111113344444555 8999999998742           3455555555433  2         125578


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhh--hccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLK--LLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAV  424 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~--Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~  424 (550)
                      ||+|||..                     ..++|+++.  |+|..|.|.   +++.++...|+...+..         . 
T Consensus       143 vi~tTn~~---------------------~~ld~al~r~gRfd~~i~~~---~P~~~~R~~il~~~l~~---------~-  188 (258)
T d1e32a2         143 VMAATNRP---------------------NSIDPALRRFGRFDREVDIG---IPDATGRLEILQIHTKN---------M-  188 (258)
T ss_dssp             EEEEESCG---------------------GGSCGGGTSTTSSCEEEECC---CCCHHHHHHHHHHTTTT---------S-
T ss_pred             EEEeCCCc---------------------cccchhhhhcccccceeECC---CCCHHHHHHHhhhhccC---------c-
Confidence            99999974                     567889986  999999999   99999999999887732         2 


Q ss_pred             cccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          425 IVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       425 ~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .+. ++.-++.|++...   |.++++|+.+++.
T Consensus       189 ~~~-~~~~~~~la~~t~---G~s~adl~~lv~~  217 (258)
T d1e32a2         189 KLA-DDVDLEQVANETH---GHVGADLAALCSE  217 (258)
T ss_dssp             CBC-TTCCHHHHHHHCT---TCCHHHHHHHHHH
T ss_pred             ccc-cccchhhhhhccc---CCCHHHHHHHHHH
Confidence            222 1112566776432   3356999999986

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=1.3e-16  Score=154.70  Aligned_cols=187  Identities=14%  Similarity=0.167  Sum_probs=121.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC-------
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG-------  278 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s-------  278 (550)
                      +.++||++++..+...+...          ..+.++||+||||||||++|+++|+.++.   .......+++.       
T Consensus        11 ~diig~~~~~~~L~~~~~~~----------~~~~~lll~Gp~G~GKTt~~~~la~~l~~---~~~~~~~~~~~~~~~~~~   77 (252)
T d1sxje2          11 NALSHNEELTNFLKSLSDQP----------RDLPHLLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQFVTASN   77 (252)
T ss_dssp             GGCCSCHHHHHHHHTTTTCT----------TCCCCEEEECSTTSSHHHHHHTHHHHHSC---TTCCC-------------
T ss_pred             HHccCcHHHHHHHHHHHHcC----------CCCCeEEEECCCCCCHHHHHHHHHHhhcC---cccccccccccccccccc
Confidence            35999999888776554433          23357999999999999999999999865   22111111111       


Q ss_pred             -------------------CCCchh--hhhhHHh----------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhh
Q 036633          279 -------------------NYTELE--SIKHFFD----------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKT  327 (550)
Q Consensus       279 -------------------~~~~~~--~~s~liG----------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~  327 (550)
                                         ......  .....+.          .........++.+++|||+|.++.+.++.|+..++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~  157 (252)
T d1sxje2          78 RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK  157 (252)
T ss_dssp             -----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred             chhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhhhccccc
Confidence                               111000  0000000          001111123356999999999999999999999998


Q ss_pred             ccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHH
Q 036633          328 DFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLR  407 (550)
Q Consensus       328 g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~  407 (550)
                      .  .           .+++||+|||..                     ..+.+.+.+|| .+|.|.   |++.+++.+++
T Consensus       158 ~--~-----------~~~~~Il~tn~~---------------------~~i~~~l~sR~-~~i~~~---~~~~~~~~~~l  199 (252)
T d1sxje2         158 Y--S-----------KNIRLIMVCDSM---------------------SPIIAPIKSQC-LLIRCP---APSDSEISTIL  199 (252)
T ss_dssp             S--T-----------TTEEEEEEESCS---------------------CSSCHHHHTTS-EEEECC---CCCHHHHHHHH
T ss_pred             c--c-----------ccccceeeeccc---------------------cchhhhhhcch-heeeec---ccchhhHHHHH
Confidence            7  5           667789998863                     45678899999 799999   99999999999


Q ss_pred             HHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633          408 EWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMD  456 (550)
Q Consensus       408 ~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~  456 (550)
                      ...+..       .++ .+. ++++++.|+..+.   | +.|..-+.++
T Consensus       200 ~~i~~~-------e~~-~~~-~~~~l~~i~~~s~---G-d~R~ai~~Lq  235 (252)
T d1sxje2         200 SDVVTN-------ERI-QLE-TKDILKRIAQASN---G-NLRVSLLMLE  235 (252)
T ss_dssp             HHHHHH-------HTC-EEC-CSHHHHHHHHHHT---T-CHHHHHHHHT
T ss_pred             HHHHHH-------cCC-CCC-cHHHHHHHHHHcC---C-cHHHHHHHHH
Confidence            877643       344 322 4678888887543   5 5564444444

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=8.8e-16  Score=145.45  Aligned_cols=178  Identities=12%  Similarity=0.077  Sum_probs=123.5

Q ss_pred             cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC------------------CCCC
Q 036633          209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN------------------DNDN  270 (550)
Q Consensus       209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------------~~~~  270 (550)
                      -+|+++.+++...+...   +       -|.++||+||+|+|||++|+.+|+.++...                  ....
T Consensus         5 Pw~~~~~~~l~~~~~~~---~-------l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~   74 (207)
T d1a5ta2           5 PWLRPDFEKLVASYQAG---R-------GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP   74 (207)
T ss_dssp             GGGHHHHHHHHHHHHTT---C-------CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred             cccHHHHHHHHHHHHcC---C-------cCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhcccc
Confidence            57888999988888876   1       247899999999999999999999987521                  0111


Q ss_pred             ceeEEecCCCCchhhhhhHHhHHHHHHHhCC----CCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCeE
Q 036633          271 HLIHFDMGNYTELESIKHFFDSLAALVKKRP----YSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNTL  346 (550)
Q Consensus       271 ~li~id~s~~~~~~~~s~liG~lt~al~~~p----~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~i  346 (550)
                      .+..+..+.......+.. +-.+.+.+...|    +.|++|||+|.++++.++.||+++|+.  .           .+++
T Consensus        75 ~~~~~~~~~~~~~i~~~~-ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep--~-----------~~~~  140 (207)
T d1a5ta2          75 DYYTLAPEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP--P-----------AETW  140 (207)
T ss_dssp             TEEEECCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC--C-----------TTEE
T ss_pred             ccchhhhhhcccccccch-hhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhh--c-----------ccce
Confidence            222222111110000000 112334333333    459999999999999999999999988  6           7888


Q ss_pred             EEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633          347 IIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV  426 (550)
Q Consensus       347 iI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l  426 (550)
                      ||++||..                     ....|.+.+|| ..|.|.   |++.+++..++..               .+
T Consensus       141 fIl~t~~~---------------------~~ll~tI~SRc-~~i~~~---~~~~~~~~~~L~~---------------~~  180 (207)
T d1a5ta2         141 FFLATREP---------------------ERLLATLRSRC-RLHYLA---PPPEQYAVTWLSR---------------EV  180 (207)
T ss_dssp             EEEEESCG---------------------GGSCHHHHTTS-EEEECC---CCCHHHHHHHHHH---------------HC
T ss_pred             eeeeecCh---------------------hhhhhhhccee-EEEecC---CCCHHHHHHHHHH---------------cC
Confidence            99988853                     35678899999 899999   9999988776632               23


Q ss_pred             cCCHHHHHHHHhcCcccCCCcccHHHHH
Q 036633          427 CPSTSALVHIASNAARKYGQNGEGLKRW  454 (550)
Q Consensus       427 ~~~~~a~~~L~~~~~~~~GaN~R~L~~~  454 (550)
                      .+++++++.++..+.   | +.|..-++
T Consensus       181 ~~~~~~~~~i~~~s~---G-s~r~al~~  204 (207)
T d1a5ta2         181 TMSQDALLAALRLSA---G-SPGAALAL  204 (207)
T ss_dssp             CCCHHHHHHHHHHTT---T-CHHHHHHT
T ss_pred             CCCHHHHHHHHHHcC---C-CHHHHHHH
Confidence            568899999988543   5 55644333

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.64  E-value=1.2e-16  Score=155.53  Aligned_cols=164  Identities=21%  Similarity=0.180  Sum_probs=109.9

Q ss_pred             HhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCC-CcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          200 VQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLS-SRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       200 l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~-~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      +++++...+||+.+.++.|.......   ...+. ....| .++||+||||||||++|++||+.+..      +|+.+++
T Consensus         3 ~~~~~~~~~i~~~~~i~~i~~~~~~~---~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~------~~~~i~~   73 (246)
T d1d2na_           3 YASYIMNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF------PFIKICS   73 (246)
T ss_dssp             STTTCTTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC------SEEEEEC
T ss_pred             HHHhhccCCcCcCHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccc------ccccccc
Confidence            45678888999999888887777644   11121 23345 88999999999999999999999877      9999998


Q ss_pred             CCCCchhhh---hhHHhHHHHHHHhCCCCeEEecccccc----------CHHHHHHHHHhhhhccccccccCCeEeecCC
Q 036633          278 GNYTELESI---KHFFDSLAALVKKRPYSVVLFDKIEKA----------NSSILNLLLKILKTDFNRKATRGIAAFDLTN  344 (550)
Q Consensus       278 s~~~~~~~~---s~liG~lt~al~~~p~~VlllDEIeka----------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~  344 (550)
                      ++.......   ...+..+.+..++++.+||||||||++          ...+.+.|+..++..  . -       ..++
T Consensus        74 ~~~~~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~--~-~-------~~~~  143 (246)
T d1d2na_          74 PDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKA--P-P-------QGRK  143 (246)
T ss_dssp             GGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCC--C-S-------TTCE
T ss_pred             ccccccccccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCC--C-c-------cccc
Confidence            764322211   122333333345555599999999864          345777888888755  2 1       1245


Q ss_pred             eEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCC-HHHHHH
Q 036633          345 TLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLL-DTTRLL  405 (550)
Q Consensus       345 ~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~-~e~i~~  405 (550)
                      ++||+|||.. +.+.                   .+.+.+||+..|.|+   .++ .+++..
T Consensus       144 v~vi~tTn~~-~~ld-------------------~~~~~~rF~~~i~~P---~~~~r~~il~  182 (246)
T d1d2na_         144 LLIIGTTSRK-DVLQ-------------------EMEMLNAFSTTIHVP---NIATGEQLLE  182 (246)
T ss_dssp             EEEEEEESCH-HHHH-------------------HTTCTTTSSEEEECC---CEEEHHHHHH
T ss_pred             eeeeeccCCh-hhcc-------------------chhhcCccceEEecC---CchhHHHHHH
Confidence            7889999963 1110                   123668898888886   554 344443

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=1.7e-15  Score=146.74  Aligned_cols=195  Identities=10%  Similarity=0.061  Sum_probs=127.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhh------hcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAA------KKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~------~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      +.++||+++++.|...+..+...      ..+......+.++||+||||||||++|+++|+.++.      +++.+++++
T Consensus        14 ~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~------~~~~~~~~~   87 (253)
T d1sxja2          14 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY------DILEQNASD   87 (253)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC------EEEEECTTS
T ss_pred             HHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHh------hhhcccccc
Confidence            67999999999999988653110      011111222278999999999999999999999987      899999998


Q ss_pred             CCchhhhhhHH----h----------HHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633          280 YTELESIKHFF----D----------SLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFDLTNT  345 (550)
Q Consensus       280 ~~~~~~~s~li----G----------~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~  345 (550)
                      ..........+    +          .........++.++++||++.++...+..+..+++..  . -        ....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~--~-~--------~~~~  156 (253)
T d1sxja2          88 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC--R-K--------TSTP  156 (253)
T ss_dssp             CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHH--H-H--------CSSC
T ss_pred             chhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhhhhHHHhhhh--c-c--------cccc
Confidence            87554332111    1          0000111234569999999999888777666666543  2 0        0112


Q ss_pred             EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                       +++++|...                    ....+.+.+|+ ..|.|.   |++.+++..++...+.+       .|+  
T Consensus       157 -ii~i~~~~~--------------------~~~~~~l~~~~-~~i~f~---~~~~~~i~~~l~~i~~~-------e~i--  202 (253)
T d1sxja2         157 -LILICNERN--------------------LPKMRPFDRVC-LDIQFR---RPDANSIKSRLMTIAIR-------EKF--  202 (253)
T ss_dssp             -EEEEESCTT--------------------SSTTGGGTTTS-EEEECC---CCCHHHHHHHHHHHHHH-------HTC--
T ss_pred             -ccccccccc--------------------cccccccccee-eeeecc---ccchhHHHHHHHHHHHH-------hCC--
Confidence             344443211                    11223466666 899999   99999999998887753       344  


Q ss_pred             ccCCHHHHHHHHhcCcccCCCcccHHHHHHc
Q 036633          426 VCPSTSALVHIASNAARKYGQNGEGLKRWMD  456 (550)
Q Consensus       426 l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~  456 (550)
                       .+++++++.|+..+.   | +.|.+-+.++
T Consensus       203 -~i~~~~l~~i~~~s~---G-DiR~ai~~L~  228 (253)
T d1sxja2         203 -KLDPNVIDRLIQTTR---G-DIRQVINLLS  228 (253)
T ss_dssp             -CCCTTHHHHHHHHTT---T-CHHHHHHHHT
T ss_pred             -CCCHHHHHHHHHhCC---C-cHHHHHHHHH
Confidence             679999999998643   5 5564433343

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=5.3e-16  Score=152.57  Aligned_cols=193  Identities=22%  Similarity=0.286  Sum_probs=126.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchh-----hhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKA-----AKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~-----~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +.|+|.+++++.|.+.+...+.     ...|+.   .|..+||+||||||||++|+++|..+..      +++.++++.+
T Consensus         7 ~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~---~~~giLL~Gp~GtGKT~l~~ala~~~~~------~~~~~~~~~l   77 (265)
T d1r7ra3           7 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT---PSKGVLFYGPPGCGKTLLAKAIANECQA------NFISIKGPEL   77 (265)
T ss_dssp             SSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCC---CCCEEEEBCCTTSSHHHHHHHHHHHTTC------EEEEECHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCC---CCCeEEEECCCCCcchhHHHHHHHHhCC------cEEEEEHHHh
Confidence            4588888888777776643210     122332   2368999999999999999999999977      9999998765


Q ss_pred             Cchhh---hhhHHhHHHHHHHhCCCCeEEeccccccCHH--------------HHHHHHHhhhhccccccccCCeEeecC
Q 036633          281 TELES---IKHFFDSLAALVKKRPYSVVLFDKIEKANSS--------------ILNLLLKILKTDFNRKATRGIAAFDLT  343 (550)
Q Consensus       281 ~~~~~---~s~liG~lt~al~~~p~~VlllDEIeka~~~--------------v~~~Ll~~ld~g~~~~l~d~g~~vd~~  343 (550)
                      .....   ...+--.|..+-...| +||+|||+|.+.+.              +.+.|+..++.=  .         .-.
T Consensus        78 ~~~~~~~~~~~l~~~f~~A~~~~p-~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--~---------~~~  145 (265)
T d1r7ra3          78 LTMWFGESEANVREIFDKARQAAP-CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM--S---------TKK  145 (265)
T ss_dssp             HTSCTTTHHHHHHHHHHHHHHTCS-EEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-----------------
T ss_pred             hhccccchHHHHHHHHHHHHhcCC-cceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCc--C---------CCC
Confidence            32111   1111113334444555 99999999977432              456777777532  1         114


Q ss_pred             CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhh--hhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccC
Q 036633          344 NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLL--KLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDS  421 (550)
Q Consensus       344 ~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll--~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~  421 (550)
                      +.+||+|||..                     ..++|+|+  +||+.+|.|.   +++.++...|+...+.+       .
T Consensus       146 ~v~vi~ttn~~---------------------~~ld~al~r~gRf~~~i~~~---~p~~~~R~~il~~~l~~-------~  194 (265)
T d1r7ra3         146 NVFIIGATNRP---------------------DIIDPAILRPGRLDQLIYIP---LPDEKSRVAILKANLRK-------S  194 (265)
T ss_dssp             CCEEEECCBSC---------------------TTTSCGGGSSTTSEEEEECC---CCCCHHHHHHHHHHTTC-------C
T ss_pred             CEEEEEeCCCc---------------------hhCCHHHhCCCCccEEEEec---chHHHHHHHHHHHHhcc-------C
Confidence            57899999974                     46889997  4999999999   99999999999876632       1


Q ss_pred             CCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcc
Q 036633          422 KAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       422 ~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      .. .-.++   ++.|+....   |.++++|..+++.
T Consensus       195 ~~-~~~~~---l~~la~~t~---g~s~~di~~lv~~  223 (265)
T d1r7ra3         195 PV-AKDVD---LEFLAKMTN---GFSGADLTEICQR  223 (265)
T ss_dssp             -----CCC---CHHHHHHHC---SSCCHHHHHHHHH
T ss_pred             Cc-hhhhh---HHHHHhcCC---CCCHHHHHHHHHH
Confidence            11 11111   344554322   2255899998886

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.60  E-value=1.2e-14  Score=147.31  Aligned_cols=208  Identities=17%  Similarity=0.174  Sum_probs=127.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC-----
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY-----  280 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~-----  280 (550)
                      ..|+||++++..+.-++...           ..+++||.||||||||++|+.++..|..       +..+....+     
T Consensus         7 ~~I~Gq~~~kral~laa~~~-----------~~h~vLl~G~pG~GKT~lar~~~~iLp~-------~~~~~~~~~~~~~~   68 (333)
T d1g8pa_           7 SAIVGQEDMKLALLLTAVDP-----------GIGGVLVFGDRGTGKSTAVRALAALLPE-------IEAVEGCPVSSPNV   68 (333)
T ss_dssp             GGSCSCHHHHHHHHHHHHCG-----------GGCCEEEECCGGGCTTHHHHHHHHHSCC-------EEEETTCTTCCSSG
T ss_pred             hhccCcHHHHHHHHHHHhcc-----------CCCeEEEECCCCccHHHHHHHHHHhCCC-------chhhccCccccCcc
Confidence            46899999998776555432           1258999999999999999999998721       111111111     


Q ss_pred             ------------------------CchhhhhhHHh--HHHH------------HHHhCCCCeEEeccccccCHHHHHHHH
Q 036633          281 ------------------------TELESIKHFFD--SLAA------------LVKKRPYSVVLFDKIEKANSSILNLLL  322 (550)
Q Consensus       281 ------------------------~~~~~~s~liG--~lt~------------al~~~p~~VlllDEIeka~~~v~~~Ll  322 (550)
                                              ....+.+.++|  .+..            .+...-++|+|+||++++++.+++.|+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl  148 (333)
T d1g8pa_          69 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLL  148 (333)
T ss_dssp             GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHH
T ss_pred             ccccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHHHHHHHHh
Confidence                                    00112345555  1111            122223589999999999999999999


Q ss_pred             HhhhhccccccccCCeEeecC-CeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHH
Q 036633          323 KILKTDFNRKATRGIAAFDLT-NTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDT  401 (550)
Q Consensus       323 ~~ld~g~~~~l~d~g~~vd~~-~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e  401 (550)
                      +.|++|++. ++..|..+.+. +.++++|+|..                    ...+++.+++||+..|.+.  .|.+.+
T Consensus       149 ~~me~~~v~-i~r~g~~~~~p~~f~liaa~Np~--------------------~~~l~~~llDRf~~~i~v~--~~~~~~  205 (333)
T d1g8pa_         149 DVAQSGENV-VERDGLSIRHPARFVLVGSGNPE--------------------EGDLRPQLLDRFGLSVEVL--SPRDVE  205 (333)
T ss_dssp             HHHHHSEEE-ECCTTCCEEEECCEEEEEEECSC--------------------SCCCCHHHHTTCSEEEECC--CCCSHH
T ss_pred             hhhcCCeEE-ecccCceecCCCCEEEEEecCcc--------------------ccccccchhhhhcceeecc--Ccchhh
Confidence            999999444 43335455443 56788888974                    2468999999998777766  123333


Q ss_pred             HHHHHHHHHHH----------H-------HHHHh---ccCCCccccCCHHHHHHHHhcCc--ccCCCcccHHHHHHcc
Q 036633          402 TRLLLREWACE----------E-------TKRRN---NDSKAVIVCPSTSALVHIASNAA--RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       402 ~i~~I~~~~l~----------~-------~~~~l---~~~~~~~l~~~~~a~~~L~~~~~--~~~GaN~R~L~~~i~~  457 (550)
                      .-..++.....          .       +..+.   ...-. .+.++++....+.....  ...|.  |...+++.-
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~v~~~~~~~~~~~~~~~~~~~~S~--R~~~~llrv  280 (333)
T d1g8pa_         206 TRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLP-KVEAPNTALYDCAALCIALGSDGL--RGELTLLRS  280 (333)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGG-GCBCCHHHHHHHHHHHHHSSSCSH--HHHHHHHHH
T ss_pred             HHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHHHhhccc-ceecCHHHHHHHHHHHHHcCCCCh--HHHHHHHHH
Confidence            33333221110          0       00010   00111 35678888887776554  22344  888777764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.59  E-value=3.1e-14  Score=138.16  Aligned_cols=208  Identities=11%  Similarity=0.071  Sum_probs=142.5

Q ss_pred             hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      ++.+.++|++..++.|..++...      +.++..+ ++++|+||||||||++|+.+++.+...  ....++.++|..+.
T Consensus        13 y~p~~l~~Re~ei~~l~~~l~~~------l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~--~~~~~~~~~~~~~~   84 (276)
T d1fnna2          13 YVPKRLPHREQQLQQLDILLGNW------LRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDK--TTARFVYINGFIYR   84 (276)
T ss_dssp             CCCSCCTTCHHHHHHHHHHHHHH------HHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTS--CCCEEEEEETTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHH------HhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcc--cCCcEEEecchhhh
Confidence            45578999999999999988754      2334344 899999999999999999999999651  34467778877766


Q ss_pred             chhhhhhHHh-------------------HHHHHHHh-CCCCeEEeccccccCHHHHHHHHHhhhhccccccccCCeEee
Q 036633          282 ELESIKHFFD-------------------SLAALVKK-RPYSVVLFDKIEKANSSILNLLLKILKTDFNRKATRGIAAFD  341 (550)
Q Consensus       282 ~~~~~s~liG-------------------~lt~al~~-~p~~VlllDEIeka~~~v~~~Ll~~ld~g~~~~l~d~g~~vd  341 (550)
                      ........+.                   .+.+.+.. ....++++|+++.++....+.+...+...  . ..      .
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~-~~------~  155 (276)
T d1fnna2          85 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEA--D-KL------G  155 (276)
T ss_dssp             SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCH--H-HH------S
T ss_pred             hhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhcc--c-cc------c
Confidence            4433211111                   33333333 44568889999999999888888777654  2 11      1


Q ss_pred             cCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhcc-ceeEecCCCCCCHHHHHHHHHHHHHHHHHHhcc
Q 036633          342 LTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLD-KLVVIDLAVPLLDTTRLLLREWACEETKRRNND  420 (550)
Q Consensus       342 ~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid-~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~  420 (550)
                      -...++|+++|....                  ...+.|.+.+|+. ..|.|.   |++.+++..|+...+...     .
T Consensus       156 ~~~~~~i~~~~~~~~------------------~~~~~~~~~~r~~~~~i~~~---~~~~~e~~~il~~r~~~~-----~  209 (276)
T d1fnna2         156 AFRIALVIVGHNDAV------------------LNNLDPSTRGIMGKYVIRFS---PYTKDQIFDILLDRAKAG-----L  209 (276)
T ss_dssp             SCCEEEEEEESSTHH------------------HHTSCHHHHHHHTTCEEECC---CCBHHHHHHHHHHHHHHH-----B
T ss_pred             ccceEEeecCCchhh------------------hhhcchhhhhhhcchhcccc---chhHHHHHHHHHHHHHHh-----c
Confidence            134556776664311                  1356777888763 458899   999999999998877431     1


Q ss_pred             CCCccccCCHHHHHHHHhcC-----c-ccCCCcccHHHHHHcc
Q 036633          421 SKAVIVCPSTSALVHIASNA-----A-RKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       421 ~~~~~l~~~~~a~~~L~~~~-----~-~~~GaN~R~L~~~i~~  457 (550)
                      .   ...+++++++.|++..     + ...| |.|.+.++++.
T Consensus       210 ~---~~~~~~~~l~~ia~~~~~~~~~~~~~G-~~R~a~~ll~~  248 (276)
T d1fnna2         210 A---EGSYSEDILQMIADITGAQTPLDTNRG-DARLAIDILYR  248 (276)
T ss_dssp             C---TTSSCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHH
T ss_pred             c---cccccHHHHHHHHHHhhhhhhhhhcCC-CHHHHHHHHHH
Confidence            2   3357999999998742     1 2235 77877777775

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.51  E-value=2e-13  Score=129.52  Aligned_cols=193  Identities=16%  Similarity=0.171  Sum_probs=130.2

Q ss_pred             hcCcccC--cHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          204 LKKRVFG--QNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       204 L~~~viG--Q~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +...++|  ...|...+...+...          ... .+++++||||||||+|+.++++.+..   .....+.++++.+
T Consensus         9 FdnF~vg~~N~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~---~~~~~~~~~~~~~   75 (213)
T d1l8qa2           9 LENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKK---RGYRVIYSSADDF   75 (213)
T ss_dssp             SSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHH---TTCCEEEEEHHHH
T ss_pred             hhhccCCCcHHHHHHHHHHHHhCc----------CCCCCcEEEECCCCCcHHHHHHHHHHHhcc---CccceEEechHHH
Confidence            4566777  455555555444433          122 46899999999999999999999987   6667788887765


Q ss_pred             CchhhhhhHHh---HHHHHHHhCCCCeEEecccccc--CHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCCh
Q 036633          281 TELESIKHFFD---SLAALVKKRPYSVVLFDKIEKA--NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD  355 (550)
Q Consensus       281 ~~~~~~s~liG---~lt~al~~~p~~VlllDEIeka--~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~  355 (550)
                      ......+..-+   .+.+.++  ...+|+||+|+..  ++..+..|..++..-  .   +       .+..+|+||+...
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~--~~dll~iDDi~~i~~~~~~~~~lf~lin~~--~---~-------~~~~iiits~~~p  141 (213)
T d1l8qa2          76 AQAMVEHLKKGTINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTL--Y---L-------LEKQIILASDRHP  141 (213)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHH--H---H-------TTCEEEEEESSCG
T ss_pred             HHHHHHHHHccchhhHHHHHh--hccchhhhhhhhhcCchHHHHHHHHHHHHH--h---h-------ccceEEEecCCcc
Confidence            43322211111   2333333  3479999999987  467777777777533  1   1       2233778888765


Q ss_pred             HHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHH
Q 036633          356 EQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVH  435 (550)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~  435 (550)
                      ..+                 ..+.|++.+|+...+.+.. +| +.++...++...+..       +|+   .+++++++|
T Consensus       142 ~~l-----------------~~~~~dL~SRL~~g~~~~i-~p-~d~~~~~iL~~~a~~-------rgl---~l~~~v~~y  192 (213)
T d1l8qa2         142 QKL-----------------DGVSDRLVSRFEGGILVEI-EL-DNKTRFKIIKEKLKE-------FNL---ELRKEVIDY  192 (213)
T ss_dssp             GGC-----------------TTSCHHHHHHHHTSEEEEC-CC-CHHHHHHHHHHHHHH-------TTC---CCCHHHHHH
T ss_pred             hhc-----------------cccchHHHHHhhCceEEEE-CC-CcHHHHHHHHHHHHH-------cCC---CCCHHHHHH
Confidence            443                 4568999999977666663 23 567777777776643       655   899999999


Q ss_pred             HHhcCcccCCCcccHHHHHHcc
Q 036633          436 IASNAARKYGQNGEGLKRWMDQ  457 (550)
Q Consensus       436 L~~~~~~~~GaN~R~L~~~i~~  457 (550)
                      |+.+.    . |.|+|..+|..
T Consensus       193 l~~~~----~-~~R~L~~~l~~  209 (213)
T d1l8qa2         193 LLENT----K-NVREIEGKIKL  209 (213)
T ss_dssp             HHHHC----S-SHHHHHHHHHH
T ss_pred             HHHhc----C-cHHHHHHHHHH
Confidence            99853    3 66999888864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=2.1e-13  Score=133.17  Aligned_cols=180  Identities=14%  Similarity=0.211  Sum_probs=130.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      ..++|.+.-++++...+.+.           ...+.+|+||||||||.++..+|+.+...+    .....++.+|++.+.
T Consensus        18 d~~igRd~Ei~~l~~iL~r~-----------~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~li   86 (268)
T d1r6bx2          18 DPLIGREKELERAIQVLCRR-----------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL   86 (268)
T ss_dssp             CCCCSCHHHHHHHHHHHTSS-----------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---
T ss_pred             CcccChHHHHHHHHHHHhcC-----------ccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHh
Confidence            36899999999999999876           336889999999999999999998775421    234568888888775


Q ss_pred             chhhh----hhHHhHHHHHHHhCCCCeEEecccccc---------CHHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633          282 ELESI----KHFFDSLAALVKKRPYSVVLFDKIEKA---------NSSILNLLLKILKTDFNRKATRGIAAFDLTNTLII  348 (550)
Q Consensus       282 ~~~~~----s~liG~lt~al~~~p~~VlllDEIeka---------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI  348 (550)
                      .....    ...+-.+.+.+...+..|+|+||++-+         +.++.+.|.++|..|.++               +|
T Consensus        87 ag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~---------------vI  151 (268)
T d1r6bx2          87 AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIR---------------VI  151 (268)
T ss_dssp             CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCE---------------EE
T ss_pred             ccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCe---------------EE
Confidence            43221    111113344445667789999999876         247899999999999333               67


Q ss_pred             EeCCCChHHHHHhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccc
Q 036633          349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIV  426 (550)
Q Consensus       349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l  426 (550)
                      .+|+..                  ..++.|  +|+|..|| +.|.+.   +++.++...|+......+...   ++   +
T Consensus       152 gatT~e------------------ey~~~~e~d~al~rrF-~~I~V~---Eps~e~t~~IL~~~~~~~e~~---h~---v  203 (268)
T d1r6bx2         152 GSTTYQ------------------EFSNIFEKDRALARRF-QKIDIT---EPSIEETVQIINGLKPKYEAH---HD---V  203 (268)
T ss_dssp             EEECHH------------------HHHCCCCCTTSSGGGE-EEEECC---CCCHHHHHHHHHHHHHHHHHH---HT---C
T ss_pred             EeCCHH------------------HHHHHHhhcHHHHhhh-cccccC---CCCHHHHHHHHHHhhHHHhcc---CC---E
Confidence            776631                  123455  68999999 799999   999999999998877665544   44   4


Q ss_pred             cCCHHHHHHHHhc
Q 036633          427 CPSTSALVHIASN  439 (550)
Q Consensus       427 ~~~~~a~~~L~~~  439 (550)
                      .++++++..+.+.
T Consensus       204 ~~~~~al~~~v~l  216 (268)
T d1r6bx2         204 RYTAKAVRAAVEL  216 (268)
T ss_dssp             CCCHHHHHHHHHH
T ss_pred             EeChHHHHHHHHH
Confidence            8899999888764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=2e-14  Score=140.64  Aligned_cols=65  Identities=17%  Similarity=0.138  Sum_probs=58.4

Q ss_pred             hhhHHHHHHHhHHHHhhcccceeChHHHHHHHHhhCCCCCCCCCchhhHHHHHHHh---hhhhcccCCCC
Q 036633            4 HKFLVKEMDNQIVSLEKIHRLQIQDEALFLASRIAQHPRNKATGELRERFIDILLK---GIKRCLNSRDK   70 (550)
Q Consensus         4 ~~~~~~~~~~~~~~~e~~h~v~i~d~al~~av~ls~r~~yi~~r~lPdkaidlld~---~~~~~~~~~~~   70 (550)
                      ...|.+||.+++++||+||+|.|+|+||.+||+||+|  |||+|+|||||||+||+   ++++...+.|+
T Consensus       183 ~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~r--yi~~~~~PdKAIdllDea~a~~~~~~~~~~~  250 (268)
T d1r6bx2         183 IEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK--YINDRHLPDKAIDVIDEAGARARLMPVSKRK  250 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH--HCTTSCTTHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred             HHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHh--hccCCCCCcHHHHHHHHHHHHHHhhccccCc
Confidence            3579999999999999999999999999999999999  99999999999999999   45565555553

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.44  E-value=7.8e-13  Score=128.78  Aligned_cols=216  Identities=10%  Similarity=0.014  Sum_probs=129.9

Q ss_pred             hhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccCC---CCCCceeEEecC
Q 036633          203 RLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDNN---DNDNHLIHFDMG  278 (550)
Q Consensus       203 ~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~---~~~~~li~id~s  278 (550)
                      +...++.|.+..++.|...+.+.   ......+..+ .+++|+||||||||++++++++.+....   .....++.+++.
T Consensus        13 ~~P~~~~~Re~e~~~l~~~l~~~---~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~   89 (287)
T d1w5sa2          13 YIPPELRVRRGEAEALARIYLNR---LLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF   89 (287)
T ss_dssp             CCCSSCSSSCHHHHHHHHHHHHH---HHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHH---HHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccc
Confidence            44578899999999998887655   3222333334 5678899999999999999999985310   112345566666


Q ss_pred             CCCchhhhhhH-H------------------hHHHHHHHh-CCCCeEEecccccc------CHHHHHHHHHhhhhccccc
Q 036633          279 NYTELESIKHF-F------------------DSLAALVKK-RPYSVVLFDKIEKA------NSSILNLLLKILKTDFNRK  332 (550)
Q Consensus       279 ~~~~~~~~s~l-i------------------G~lt~al~~-~p~~VlllDEIeka------~~~v~~~Ll~~ld~g~~~~  332 (550)
                      ........-.. .                  ..+.+.... ....++++||++.+      +.+....|.++++.-  ..
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l--~~  167 (287)
T d1w5sa2          90 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI--PS  167 (287)
T ss_dssp             GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS--CC
T ss_pred             cccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhc--ch
Confidence            65443222111 1                  133333333 44467889999855      345666666655432  10


Q ss_pred             cccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHH
Q 036633          333 ATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACE  412 (550)
Q Consensus       333 l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~  412 (550)
                      ..      ...+..+|+.+|......              . .....|.+.+|++..+.|.   |++.+++..|+...+.
T Consensus       168 ~~------~~~~~~~i~i~~~~~~~~--------------~-~~~~~~~~~~r~~~~i~f~---~y~~~el~~Il~~r~~  223 (287)
T d1w5sa2         168 RD------GVNRIGFLLVASDVRALS--------------Y-MREKIPQVESQIGFKLHLP---AYKSRELYTILEQRAE  223 (287)
T ss_dssp             TT------SCCBEEEEEEEEETHHHH--------------H-HHHHCHHHHTTCSEEEECC---CCCHHHHHHHHHHHHH
T ss_pred             hh------cccceeEEeecccHHHHH--------------H-HHhhccchhcccceeeecc---CCcHHHHHHHHhhhHH
Confidence            11      113344555444321100              0 0123567889998999999   9999999999987764


Q ss_pred             HHHHHhccCCCccccCCHHHHHHHHhcCc---ccCCCcccHHHHHHc
Q 036633          413 ETKRRNNDSKAVIVCPSTSALVHIASNAA---RKYGQNGEGLKRWMD  456 (550)
Q Consensus       413 ~~~~~l~~~~~~~l~~~~~a~~~L~~~~~---~~~GaN~R~L~~~i~  456 (550)
                      .       ... ...+++++++++++.+.   ...| +.|..-++++
T Consensus       224 ~-------~~~-~~~~~~~al~~ia~~~~~~~~~~g-d~R~ai~~l~  261 (287)
T d1w5sa2         224 L-------GLR-DTVWEPRHLELISDVYGEDKGGDG-SARRAIVALK  261 (287)
T ss_dssp             H-------HBC-TTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHH
T ss_pred             H-------hhc-cCCCCHHHHHHHHHHHhccccCCC-CHHHHHHHHH
Confidence            2       112 33689999999987553   2234 4454444444

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.39  E-value=1.9e-12  Score=121.15  Aligned_cols=137  Identities=13%  Similarity=0.120  Sum_probs=96.4

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCC----CeEEeccccc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPY----SVVLFDKIEK  312 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~----~VlllDEIek  312 (550)
                      .+.++||+||+|+|||++|..+++.+.........++.++...-.  -.+... -.+.+.+..+|+    .|+++||+|+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~--I~Id~I-R~i~~~~~~~~~~~~~KviIId~ad~   90 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGEN--IGIDDI-RTIKDFLNYSPELYTRKYVIVHDCER   90 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSC--BCHHHH-HHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCC--CCHHHH-HHHHHHHhhCcccCCCEEEEEeCccc
Confidence            457999999999999999999999886522233357777643210  011111 134555555553    4999999999


Q ss_pred             cCHHHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEe
Q 036633          313 ANSSILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVI  392 (550)
Q Consensus       313 a~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f  392 (550)
                      ++.+.+++||++||+.  .           .+++||++||..                     ..+.|.+++|| .++.|
T Consensus        91 l~~~aqNaLLK~LEEP--p-----------~~t~fiLit~~~---------------------~~ll~TI~SRC-~~i~~  135 (198)
T d2gnoa2          91 MTQQAANAFLKALEEP--P-----------EYAVIVLNTRRW---------------------HYLLPTIKSRV-FRVVV  135 (198)
T ss_dssp             BCHHHHHHTHHHHHSC--C-----------TTEEEEEEESCG---------------------GGSCHHHHTTS-EEEEC
T ss_pred             cchhhhhHHHHHHhCC--C-----------CCceeeeccCCh---------------------hhCHHHHhcce-EEEeC
Confidence            9999999999999987  5           778899988863                     45778899999 88999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHHH
Q 036633          393 DLAVPLLDTTRLLLREWACEETKR  416 (550)
Q Consensus       393 ~~~~pL~~e~i~~I~~~~l~~~~~  416 (550)
                      .   +..  +...++...+..+.+
T Consensus       136 ~---~p~--~~~~~~~~~~~~~~~  154 (198)
T d2gnoa2         136 N---VPK--EFRDLVKEKIGDLWE  154 (198)
T ss_dssp             C---CCH--HHHHHHHHHHTTHHH
T ss_pred             C---Cch--HHHHHHHHHHHHHHH
Confidence            8   543  344454444443333

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.38  E-value=3.1e-12  Score=131.46  Aligned_cols=178  Identities=16%  Similarity=0.199  Sum_probs=116.4

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      ..++|.+.-+.++...+.+.           +..+.+|+||||||||.++..+|..+....    ..+..++.+|++.+.
T Consensus        22 d~~~gr~~ei~~~~~~L~r~-----------~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~   90 (387)
T d1qvra2          22 DPVIGRDEEIRRVIQILLRR-----------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL   90 (387)
T ss_dssp             CCCCSCHHHHHHHHHHHHCS-----------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----
T ss_pred             CCCcCcHHHHHHHHHHHhcC-----------CCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhh
Confidence            46899999999999999876           345678999999999999999998775511    233568999998886


Q ss_pred             chhhhhhHHh-------HHHHHHHhC-CCCeEEecccccc--------CHHHHHHHHHhhhhccccccccCCeEeecCCe
Q 036633          282 ELESIKHFFD-------SLAALVKKR-PYSVVLFDKIEKA--------NSSILNLLLKILKTDFNRKATRGIAAFDLTNT  345 (550)
Q Consensus       282 ~~~~~s~liG-------~lt~al~~~-p~~VlllDEIeka--------~~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~  345 (550)
                      .....   .|       .+...+... +..|+||||++.+        +.++.++|.++|..|.++              
T Consensus        91 ag~~~---~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~--------------  153 (387)
T d1qvra2          91 AGAKY---RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELR--------------  153 (387)
T ss_dssp             ----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCC--------------
T ss_pred             cccCc---chhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcc--------------
Confidence            44332   34       223333443 3457899999876        347889999999999444              


Q ss_pred             EEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCcc
Q 036633          346 LIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVI  425 (550)
Q Consensus       346 iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~  425 (550)
                       +|.+|+.              +.+.. +.+  .|+|..|| +.|.+.   +++.++-..|+......+...   +++  
T Consensus       154 -~I~~tT~--------------~ey~~-~e~--d~al~rrF-~~v~v~---ep~~~~~~~il~~~~~~~e~~---h~v--  206 (387)
T d1qvra2         154 -LIGATTL--------------DEYRE-IEK--DPALERRF-QPVYVD---EPTVEETISILRGLKEKYEVH---HGV--  206 (387)
T ss_dssp             -EEEEECH--------------HHHHH-HTT--CTTTCSCC-CCEEEC---CCCHHHHHHHHHHHHHHHHHH---TTC--
T ss_pred             -eeeecCH--------------HHHHH-hcc--cHHHHHhc-ccccCC---CCcHHHHHHHHHHHHHHHHhc---cCC--
Confidence             6666653              22222 322  68999999 799999   999999999988766665543   544  


Q ss_pred             ccCCHHHHHHHHhc
Q 036633          426 VCPSTSALVHIASN  439 (550)
Q Consensus       426 l~~~~~a~~~L~~~  439 (550)
                       .++++++...+..
T Consensus       207 -~~~~~ai~~~v~l  219 (387)
T d1qvra2         207 -RISDSAIIAAATL  219 (387)
T ss_dssp             -EECHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHh
Confidence             8899998887764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.32  E-value=1.5e-12  Score=130.07  Aligned_cols=127  Identities=12%  Similarity=0.135  Sum_probs=84.7

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh-------HHHHHHHhCCCCeEEec
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD-------SLAALVKKRPYSVVLFD  308 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG-------~lt~al~~~p~~VlllD  308 (550)
                      .| +++||+||||||||.+|++||..+..    ..+|+.++++++..     .++|       .+.+..+. | +|||||
T Consensus       121 ~~~g~~l~~G~pG~GKT~la~ala~~~~~----~~~~~~~~~~~~~~-----~~~G~~e~~~~~~f~~a~~-~-~ilf~D  189 (321)
T d1w44a_         121 YASGMVIVTGKGNSGKTPLVHALGEALGG----KDKYATVRFGEPLS-----GYNTDFNVFVDDIARAMLQ-H-RVIVID  189 (321)
T ss_dssp             EESEEEEEECSSSSCHHHHHHHHHHHHHT----TSCCEEEEBSCSST-----TCBCCHHHHHHHHHHHHHH-C-SEEEEE
T ss_pred             cCCceEEEECCCCccHHHHHHHHHHHhcC----CCCeEEEEhhHhhh-----cccchHHHHHHHHHHHHhh-c-cEEEee
Confidence            45 78899999999999999999999864    33799999999864     3344       22222333 4 799999


Q ss_pred             cccccCH------------HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCCh--HHHHHhhhhhhHhhHHHHh
Q 036633          309 KIEKANS------------SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKD--EQVYEVMLTATYGRVNEVT  374 (550)
Q Consensus       309 EIeka~~------------~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~--~~~~~~~~~~~~~~~~~~l  374 (550)
                      |||.+.+            .+.+.||.-+|.-  .         ..++++||+|||...  +.+                
T Consensus       190 Eid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~--~---------~~~~v~viaatN~~~~~~~i----------------  242 (321)
T d1w44a_         190 SLKNVIGAAGGNTTSGGISRGAFDLLSDIGAM--A---------ASRGCVVIASLNPTSNDDKI----------------  242 (321)
T ss_dssp             CCTTTC-----------CCHHHHHHHHHHHHH--H---------HHHTCEEEEECCCCCCCHHH----------------
T ss_pred             hhhhhccccccCCCCCcchhhhhhhhhhcccc--c---------cCCCeEEEEeCCCcccccch----------------
Confidence            9998754            3556666666522  1         125688999999631  111                


Q ss_pred             ccCCChhh--hhhccceeEecCCCCCCHHHHHHHHH
Q 036633          375 GSLFKPSL--LKLLDKLVVIDLAVPLLDTTRLLLRE  408 (550)
Q Consensus       375 ~~~f~p~l--l~Rid~ii~f~~~~pL~~e~i~~I~~  408 (550)
                          .+.+  .+|+|..|.+.   +++.++-..|+.
T Consensus       243 ----~~~~~r~~Rf~~~v~v~---~pd~~~r~~il~  271 (321)
T d1w44a_         243 ----VELVKEASRSNSTSLVI---STDVDGEWQVLT  271 (321)
T ss_dssp             ----HHHHHHHHHHSCSEEEE---ECSSTTEEEEEE
T ss_pred             ----hhhhhccCcccceeecC---CCChHHHHHHHH
Confidence                1111  27888888887   556655555543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=3.7e-12  Score=117.96  Aligned_cols=154  Identities=13%  Similarity=0.195  Sum_probs=106.9

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCC----CCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNN----DNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~----~~~~~li~id~s~~~  281 (550)
                      ..++|.++-++++...+.+.           +..+.+|+||||||||.++..+|+.+....    ..+..++.+|++.+.
T Consensus        22 d~~igRd~Ei~~l~~iL~r~-----------~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~Li   90 (195)
T d1jbka_          22 DPVIGRDEEIRRTIQVLQRR-----------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV   90 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSS-----------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH
T ss_pred             CCCcCcHHHHHHHHHHHhcc-----------CCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHh
Confidence            46899999999999999876           335889999999999999999999775411    234678889977654


Q ss_pred             chhhh-hhHHh---HHHHHHHh-CCCCeEEeccccccC--------HHHHHHHHHhhhhccccccccCCeEeecCCeEEE
Q 036633          282 ELESI-KHFFD---SLAALVKK-RPYSVVLFDKIEKAN--------SSILNLLLKILKTDFNRKATRGIAAFDLTNTLII  348 (550)
Q Consensus       282 ~~~~~-s~liG---~lt~al~~-~p~~VlllDEIeka~--------~~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI  348 (550)
                      ..... ..+-.   .+.+.+.. .+..|+||||++.+-        .++.+.|..+|..|.++               +|
T Consensus        91 Ag~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~---------------~I  155 (195)
T d1jbka_          91 AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELH---------------CV  155 (195)
T ss_dssp             TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCC---------------EE
T ss_pred             ccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCce---------------EE
Confidence            32221 01111   23333333 344688999998762        24679999999999333               67


Q ss_pred             EeCCCChHHHHHhhhhhhHhhHHHHhccCC--ChhhhhhccceeEecCCCCCCHHHHHHHH
Q 036633          349 MTSDLKDEQVYEVMLTATYGRVNEVTGSLF--KPSLLKLLDKLVVIDLAVPLLDTTRLLLR  407 (550)
Q Consensus       349 ~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f--~p~ll~Rid~ii~f~~~~pL~~e~i~~I~  407 (550)
                      .||...              .+    +++|  +|+|.+|| +.|...   +++.++-..|+
T Consensus       156 gatT~e--------------ey----~~~~e~d~aL~rrF-~~I~V~---Ep~~e~t~~IL  194 (195)
T d1jbka_         156 GATTLD--------------EY----RQYIEKDAALERRF-QKVFVA---EPSVEDTIAIL  194 (195)
T ss_dssp             EEECHH--------------HH----HHHTTTCHHHHTTE-EEEECC---CCCHHHHHTTC
T ss_pred             ecCCHH--------------HH----HHHHHcCHHHHhcC-CEeecC---CCCHHHHHHHh
Confidence            766631              11    1233  78999999 788888   78887766553

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.20  E-value=5.1e-12  Score=128.89  Aligned_cols=99  Identities=15%  Similarity=0.124  Sum_probs=67.6

Q ss_pred             HHHHHHHHHH-hCCCCCCCCC--chHHHHHHHhhhhcCcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCC
Q 036633          172 EEIAEVASKL-TGIPASWFCT--KPEERYMRVQGRLKKRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNC  248 (550)
Q Consensus       172 ~~i~~v~~~~-~gip~~~~~~--~~~~~l~~l~~~L~~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~G  248 (550)
                      +.|.+.+..| ..+|+.....  .+......+-..+...+.|++.++......+.+.      .  | ++..+||+||||
T Consensus        94 e~i~~~~~~~~~~~p~~~~~~~~~d~~~~~~il~~l~~~~~~~~~~i~~~l~~~~~~------~--~-~~~~~~~~g~~~  164 (362)
T d1svma_          94 QMLTNRFNDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYN------I--P-KKRYWLFKGPID  164 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHC------C--T-TCCEEEEECSTT
T ss_pred             HHHHHHHHHHHhhCccccccccccCHHHHHHHHHHHHhcccchHHHHHHHHHHHHhC------C--C-CcCeEEEECCCC
Confidence            3455555555 3345433322  2334444555678888999988876555444333      2  2 336999999999


Q ss_pred             CcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh
Q 036633          249 SGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES  285 (550)
Q Consensus       249 vGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~  285 (550)
                      ||||++|++||+.+.+      +++.+|+|+......
T Consensus       165 ~gk~~~~~~~~~~~~~------~~i~in~s~~rs~~~  195 (362)
T d1svma_         165 SGKTTLAAALLELCGG------KALNVNLPLDRLNFE  195 (362)
T ss_dssp             SSHHHHHHHHHHHHCC------EEECCSSCTTTHHHH
T ss_pred             CCHHHHHHHHHHHcCC------CEEEEECcchhhHHH
Confidence            9999999999999988      999999998764433

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.78  E-value=1.4e-08  Score=97.79  Aligned_cols=61  Identities=23%  Similarity=0.304  Sum_probs=48.2

Q ss_pred             HHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh
Q 036633          215 IDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE  284 (550)
Q Consensus       215 i~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~  284 (550)
                      ...+...+...   ..|......|..+||+||||||||++|++||..++.      +|+.+|+++|...+
T Consensus        12 ~~~~~~~~~~~---~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~------~~~~i~~d~~~~~~   72 (273)
T d1gvnb_          12 ENRLNDNLEEL---IQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQG------NVIVIDNDTFKQQH   72 (273)
T ss_dssp             HHHHHHHHHHH---HTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTT------CCEEECTHHHHTTS
T ss_pred             HHHHHHHHHHH---HhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhc------ceEEEecHHHHHHh
Confidence            34444455444   556677778877999999999999999999999988      89999998886543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.30  E-value=4.7e-06  Score=79.10  Aligned_cols=55  Identities=24%  Similarity=0.307  Sum_probs=43.0

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +.++|.++.++.+.+.   .            +.+++++||+|+|||++++.+++.+..      .+..+++..+.
T Consensus        12 ~~f~GR~~el~~l~~~---~------------~~~i~i~G~~G~GKTsLl~~~~~~~~~------~~~~i~~~~~~   66 (283)
T d2fnaa2          12 KDFFDREKEIEKLKGL---R------------APITLVLGLRRTGKSSIIKIGINELNL------PYIYLDLRKFE   66 (283)
T ss_dssp             GGSCCCHHHHHHHHHT---C------------SSEEEEEESTTSSHHHHHHHHHHHHTC------CEEEEEGGGGT
T ss_pred             hhCCChHHHHHHHHhc---c------------CCEEEEEcCCCCcHHHHHHHHHHHCCC------CeEEEEecccc
Confidence            6789999998886542   1            147889999999999999999998865      67777765544

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.23  E-value=1.3e-06  Score=77.94  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=22.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++++||||+|||+|++.|+..+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCC
Confidence            4799999999999999999998864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.14  E-value=2.4e-05  Score=75.62  Aligned_cols=69  Identities=12%  Similarity=0.094  Sum_probs=47.3

Q ss_pred             CcccCcHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccC-CCCCCceeEEecCCCCch
Q 036633          206 KRVFGQNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDN-NDNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       206 ~~viGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~-~~~~~~li~id~s~~~~~  283 (550)
                      ..++|.+.-+++|...+...         ...+ .++.++|+.|+|||+||+.+.+..... +..-...+.++.+.....
T Consensus        20 ~~~~gR~~~~~~i~~~L~~~---------~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~   90 (277)
T d2a5yb3          20 MTCYIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPK   90 (277)
T ss_dssp             CCSCCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTT
T ss_pred             CceeCcHHHHHHHHHHHHhc---------cCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCH
Confidence            35889999999999999754         1233 688999999999999999998763210 001113455666655443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=98.12  E-value=2.8e-06  Score=77.70  Aligned_cols=122  Identities=15%  Similarity=0.186  Sum_probs=77.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL  318 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~  318 (550)
                      ..++|+|||+||||.+|.+|.+.+++      ..+.+.-+  ...-..+.    ++      ...++++||+........
T Consensus        54 n~i~~~GP~~TGKS~f~~sl~~~l~G------~vis~~N~--~s~F~Lq~----l~------~~kv~l~dD~t~~~~~~~  115 (205)
T d1tuea_          54 NCLVFCGPANTGKSYFGMSFIHFIQG------AVISFVNS--TSHFWLEP----LT------DTKVAMLDDATTTCWTYF  115 (205)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHTC------EECCCCCS--SSCGGGGG----GT------TCSSEEEEEECHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHHHHhCC------EEEeccCC--CCCccccc----cc------CCeEEEEeccccchHHHH
Confidence            79999999999999999999999977      33322211  00011111    11      126999999988777777


Q ss_pred             HHHHHhhhhccccccccC---CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCC
Q 036633          319 NLLLKILKTDFNRKATRG---IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLA  395 (550)
Q Consensus       319 ~~Ll~~ld~g~~~~l~d~---g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~  395 (550)
                      +..++.+=+|. . ++-.   ...+.++-+-+|+|||.....                  ..-.+.|.+|+ .+++|+-+
T Consensus       116 d~~lK~ll~G~-~-vsvd~KhK~~vqi~~pPliITsN~~~~~------------------~d~~~~L~sRi-~~f~F~~~  174 (205)
T d1tuea_         116 DTYMRNALDGN-P-ISIDRKHKPLIQLKCPPILLTTNIHPAK------------------DNRWPYLESRI-TVFEFPNA  174 (205)
T ss_dssp             HHHCHHHHHTC-C-EEEC----CCEEECCCCEEEEESSCTTS------------------SSSCHHHHTSC-EEEECCSC
T ss_pred             HHHHHhccCCC-e-eeeecccCCcccccCCCEEEEcCCCCCc------------------cccchhhhheE-EEEECCCc
Confidence            77655544551 2 4333   223444556688899975321                  12245688999 89999855


Q ss_pred             CCCC
Q 036633          396 VPLL  399 (550)
Q Consensus       396 ~pL~  399 (550)
                      -|++
T Consensus       175 fP~~  178 (205)
T d1tuea_         175 FPFD  178 (205)
T ss_dssp             CCBC
T ss_pred             CCCC
Confidence            5543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.76  E-value=0.00016  Score=66.57  Aligned_cols=115  Identities=11%  Similarity=0.167  Sum_probs=67.1

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh-----hhhhHHh----------HHHH------
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE-----SIKHFFD----------SLAA------  295 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~-----~~s~liG----------~lt~------  295 (550)
                      +|.+++|+||+|||||+++--||..+..   ...+..-+.+..|.-..     ...+.+|          .+..      
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~   81 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN---LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAV   81 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHH
Confidence            5689999999999999987777877655   34456666666665332     2233333          1111      


Q ss_pred             -HHHhCCCCeEEeccccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          296 -LVKKRPYSVVLFDKIEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       296 -al~~~p~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                       ..+.+.+.+||+|=....+.  +....|-.+.+--  . ..+.   ..-..+++++.++.+.+.+..
T Consensus        82 ~~~~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~--~-~~~~---~~p~~~~LVl~a~~~~~~~~~  143 (207)
T d1okkd2          82 QAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAI--A-KADP---EEPKEVWLVLDAVTGQNGLEQ  143 (207)
T ss_dssp             HHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHH--H-HHCT---TCCSEEEEEEETTBCTHHHHH
T ss_pred             HHHHHCCCCEEEcCccccchhhHHHHHHHHHHHHHh--h-hccc---CCCceEEEEeecccCchHHHH
Confidence             12334678999999988764  3333333333211  1 0000   001235688888888766544

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.75  E-value=0.00011  Score=67.95  Aligned_cols=114  Identities=13%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----hhhHHh-------------HH---
Q 036633          235 RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----IKHFFD-------------SL---  293 (550)
Q Consensus       235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----~s~liG-------------~l---  293 (550)
                      |++|.+++|+||+|||||+.+--||..+..   ...++.-+.+..|.-...     ..+.+|             ..   
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~~~---~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~   84 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVD---EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFD   84 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHH
Confidence            567799999999999999977777766654   344565566666653211     122333             11   


Q ss_pred             -HHHHHhCCCCeEEeccccccCHH--HHHHH---HHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          294 -AALVKKRPYSVVLFDKIEKANSS--ILNLL---LKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       294 -t~al~~~p~~VlllDEIeka~~~--v~~~L---l~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                       ...-..+.+.+||+|=....|.+  ..+.|   .+.....    ..+.     -..+++++.++.+.+.+..
T Consensus        85 ~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~----~~~~-----p~~~~LVl~a~~~~~~~~~  148 (213)
T d1vmaa2          85 AVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKK----IPDA-----PHETLLVIDATTGQNGLVQ  148 (213)
T ss_dssp             HHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGT----CTTC-----CSEEEEEEEGGGHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhc----cccc-----cceeEEeeccccCcchhhh
Confidence             11112356789999999887754  33333   3333322    1110     1235678877777655543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=5.7e-06  Score=71.85  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=23.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +++|.||||||||++|+.||+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~   28 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNM   28 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6888899999999999999999866

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.68  E-value=0.00018  Score=66.25  Aligned_cols=109  Identities=12%  Similarity=0.154  Sum_probs=68.5

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----hhhHHh----------HH-------
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----IKHFFD----------SL-------  293 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----~s~liG----------~l-------  293 (550)
                      ..|.+++|+||+|||||+++--||..+-.   ...+..-+.+..|.-...     ..+.+|          .+       
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~   84 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV   84 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHH---TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHH
Confidence            34578999999999999988888877765   445666777766653321     222333          11       


Q ss_pred             HHHHHhCCCCeEEeccccccCH--HHHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHH
Q 036633          294 AALVKKRPYSVVLFDKIEKANS--SILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVY  359 (550)
Q Consensus       294 t~al~~~p~~VlllDEIeka~~--~v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~  359 (550)
                      ....+...+.+||+|=....|.  .....|..+.+..  .          -..+++++.++.+.+.+.
T Consensus        85 ~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~--~----------~~~~llv~~a~~~~~~~~  140 (207)
T d1ls1a2          85 EEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL--G----------PDEVLLVLDAMTGQEALS  140 (207)
T ss_dssp             HHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH--C----------CSEEEEEEEGGGTHHHHH
T ss_pred             HHHHhhccCcceeecccccchhhhhhHHHHHHHHhhc--C----------CceEEEEeccccchhHHH
Confidence            1122345678999999987764  4555555555433  1          134668888877765553

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.66  E-value=6e-06  Score=73.36  Aligned_cols=33  Identities=18%  Similarity=0.077  Sum_probs=28.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      ..++|.|||||||||+|+.||+.+..      +++..++
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~~------~~i~~~~   40 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFNT------TSAWEYG   40 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTC------EEECCTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC------CeEeeeh
Confidence            68999999999999999999999866      6665443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=7.7e-05  Score=68.90  Aligned_cols=117  Identities=12%  Similarity=0.146  Sum_probs=68.7

Q ss_pred             cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchh-----hhhhHHh-----------------H
Q 036633          235 RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELE-----SIKHFFD-----------------S  292 (550)
Q Consensus       235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~-----~~s~liG-----------------~  292 (550)
                      .++|.+++|+||+|||||+.+--||..+..   ...+..-+.+..|.-..     ...+.+|                 .
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~---~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~   82 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFD   82 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHT---TTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHH
Confidence            346789999999999999987777877655   44567777777776332     1223333                 1


Q ss_pred             HHHHHHhCCCCeEEeccccccCHH--HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHHHH
Q 036633          293 LAALVKKRPYSVVLFDKIEKANSS--ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQVYE  360 (550)
Q Consensus       293 lt~al~~~p~~VlllDEIeka~~~--v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~~~  360 (550)
                      ..+..+.+.+.+||+|=....|.+  ..+.|-++.+--  . ..+.   ..-..+++++.++.+.+.+..
T Consensus        83 ~~~~a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~--~-~~~~---~~p~~~~LVl~a~~~~~~~~~  146 (211)
T d2qy9a2          83 AIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVM--K-KLDV---EAPHEVMLTIDASTGQNAVSQ  146 (211)
T ss_dssp             HHHHHHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHH--T-TTCT---TCCSEEEEEEEGGGTHHHHHH
T ss_pred             HHHHHHHcCCCEEEeccCCCccccHHHHHHHHHHHHHH--h-hhcc---cCcceeeeehhcccCcchHHH
Confidence            222234467789999999876643  334443333211  1 0000   001235677777777665544

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.63  E-value=9.9e-05  Score=70.19  Aligned_cols=26  Identities=23%  Similarity=0.190  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+++++|+..+..
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~~p   67 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFYDI   67 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTTCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcccCC
Confidence            57899999999999999999987654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.61  E-value=5.9e-05  Score=76.74  Aligned_cols=87  Identities=22%  Similarity=0.323  Sum_probs=62.6

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchhh---------hhhHHhHHHHHHHhCCCCeE
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELES---------IKHFFDSLAALVKKRPYSVV  305 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~~---------~s~liG~lt~al~~~p~~Vl  305 (550)
                      .| |.+||+||+|+|||++..++-+.+..   ...+++.+ |--||.-.+.         ...+-..+..++|..| .||
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~---~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dP-Dvi  231 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNS---SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDP-DVV  231 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCC---TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCC-SEE
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhcC---CCceEEEeccCcccccCCCCeeeecCCcCCCHHHHHHHHHhhcC-CEE
Confidence            45 89999999999999999999888866   44555554 2223321111         0011225677788888 899


Q ss_pred             EeccccccCHHHHHHHHHhhhhcccc
Q 036633          306 LFDKIEKANSSILNLLLKILKTDFNR  331 (550)
Q Consensus       306 llDEIeka~~~v~~~Ll~~ld~g~~~  331 (550)
                      ++.||-  ++......++.-..|  +
T Consensus       232 ~igEiR--d~~ta~~a~~aa~tG--h  253 (401)
T d1p9ra_         232 MVGEIR--DLETAQIAVQASLTG--H  253 (401)
T ss_dssp             EESCCC--SHHHHHHHHHHHHTT--C
T ss_pred             EecCcC--ChHHHHHHHHHHhcC--C
Confidence            999998  677888888999999  7

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.61  E-value=8.1e-05  Score=68.77  Aligned_cols=108  Identities=9%  Similarity=0.124  Sum_probs=59.0

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhh-----hhhHHh----------H----HHHH
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELES-----IKHFFD----------S----LAAL  296 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~-----~s~liG----------~----lt~a  296 (550)
                      ++|.+++|+||||+|||+++--||..+-.   ...++.-+.+..|.-...     ....+|          .    +.++
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~---~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a   86 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK---KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRG   86 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHH---TTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHH
Confidence            35699999999999999987777766654   334555566655553221     223333          1    1222


Q ss_pred             ---HHhCCCCeEEeccccccCHH----HHHHHHHhhhhccccccccCCeEeecCCeEEEEeCCCChHHH
Q 036633          297 ---VKKRPYSVVLFDKIEKANSS----ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTSDLKDEQV  358 (550)
Q Consensus       297 ---l~~~p~~VlllDEIeka~~~----v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~TsN~g~~~~  358 (550)
                         .+...+.+||+|=....+-+    ....|..+.+..  .          ...+++++.++.+.+.+
T Consensus        87 ~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~--~----------~~~~~LVl~a~~~~~~~  143 (211)
T d1j8yf2          87 VEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAI--K----------PDEVTLVIDASIGQKAY  143 (211)
T ss_dssp             HHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHH--C----------CSEEEEEEEGGGGGGHH
T ss_pred             HHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhc--C----------CceEEEEEecccCcchH
Confidence               23467789999988875432    123333333322  1          12356777777665444

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=8e-05  Score=70.29  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=23.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+|+++|...+..
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~~p   55 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFYIP   55 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            57899999999999999999987754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.59  E-value=1.9e-05  Score=69.66  Aligned_cols=28  Identities=29%  Similarity=0.272  Sum_probs=24.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++.+++|+|+||+||||+|++||+.|..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4478889999999999999999999854

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.55  E-value=0.0001  Score=62.02  Aligned_cols=26  Identities=15%  Similarity=-0.068  Sum_probs=19.1

Q ss_pred             eeEEEeccCCCcHHHHHH-HHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAK-AIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk-~la~~l~~  264 (550)
                      .+.++.+|||+|||..|- ++......
T Consensus         8 ~~~il~~~tGsGKT~~~~~~~~~~~~~   34 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRFLPQILAECAR   34 (140)
T ss_dssp             CEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred             CcEEEEcCCCCChhHHHHHHHHHHhhh
Confidence            588999999999997763 44444433

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=1.4e-05  Score=72.03  Aligned_cols=28  Identities=18%  Similarity=0.181  Sum_probs=25.4

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++.+++|+|+||+|||++|+.||+.+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5678889999999999999999999865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.54  E-value=2e-05  Score=71.46  Aligned_cols=36  Identities=19%  Similarity=0.386  Sum_probs=30.5

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      .+|.++++.||||+|||++|+.||+.+        .+..+++++
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~--------g~~~i~~g~   39 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF--------GWVHLSAGD   39 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH--------CCEEEEHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH--------CCceEchhh
Confidence            377899999999999999999999987        466777544

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.54  E-value=1.7e-05  Score=69.76  Aligned_cols=25  Identities=28%  Similarity=0.303  Sum_probs=22.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++|+||||||||++|+.||+.+.-
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~   30 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGL   30 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            6789999999999999999999855

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.54  E-value=9.4e-05  Score=70.40  Aligned_cols=26  Identities=23%  Similarity=0.207  Sum_probs=22.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~~p   70 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFYDV   70 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcCCc
Confidence            57899999999999999999876643

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=3.2e-05  Score=67.99  Aligned_cols=28  Identities=25%  Similarity=0.472  Sum_probs=24.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .|..++|+||||+|||++|+.|++.++.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~~   32 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLHA   32 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3478899999999999999999999854

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=2.7e-05  Score=70.78  Aligned_cols=38  Identities=16%  Similarity=0.426  Sum_probs=30.4

Q ss_pred             cCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          235 RRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      |++..+++|.||||+|||++|+.||+.+        .+..++++++
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~--------g~~~is~gdl   42 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDY--------SFVHLSAGDL   42 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS--------SCEEEEHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHh--------CCeEEehhHH
Confidence            4444788899999999999999999987        4677776543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.48  E-value=3e-05  Score=68.31  Aligned_cols=28  Identities=32%  Similarity=0.344  Sum_probs=24.5

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +|..++|+||||+|||++|+.||+.+..
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            3478999999999999999999998743

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.46  E-value=2.3e-05  Score=69.10  Aligned_cols=34  Identities=32%  Similarity=0.449  Sum_probs=29.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      ..++|.||||+|||++|+.|++.+..      +++.+|..
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~lg~------~~~~~~~d   38 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLPGV------PKVHFHSD   38 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSSS------CEEEECTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC------CEEEecHH
Confidence            57889999999999999999998766      78877653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00019  Score=68.02  Aligned_cols=26  Identities=31%  Similarity=0.418  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||+|+++|...+..
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~~p   66 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLYQP   66 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcccCC
Confidence            57899999999999999999987643

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.44  E-value=4.5e-05  Score=67.04  Aligned_cols=33  Identities=15%  Similarity=0.452  Sum_probs=28.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      ..++|.||||+|||++|+.|++.+..      +++.++.
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~------~~~~~~~   36 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPE------PWLAFGV   36 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSS------CEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCC------CeEEeec
Confidence            47899999999999999999999876      6666653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.44  E-value=9.3e-05  Score=69.92  Aligned_cols=26  Identities=23%  Similarity=0.423  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++++.|+..+..
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~~p   54 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFYQP   54 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            57889999999999999999987753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=3.1e-05  Score=68.42  Aligned_cols=31  Identities=26%  Similarity=0.331  Sum_probs=25.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      .++|.|+||||||++|+.||+.+..      +|+-.|
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~------~fiD~D   33 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGV------GLLDTD   33 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTC------CEEEHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCC------CeEeec
Confidence            3567799999999999999999977      776443

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.39  E-value=5.4e-05  Score=68.86  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=24.6

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |..++++|+||+|||++|+.||+.+..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~   28 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNF   28 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            568999999999999999999998864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.38  E-value=2.9e-05  Score=70.11  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=28.7

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      .|..++|.||||+|||++|+.||+.+        .+.++++++
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~--------~~~~is~~~   36 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKY--------QLAHISAGD   36 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH--------CCEECCHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH--------CCcEEehhH
Confidence            46678899999999999999999998        345566544

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.38  E-value=0.00015  Score=64.94  Aligned_cols=57  Identities=21%  Similarity=0.278  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          213 DAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       213 ~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +.++.++..+...        .+..|..+.+.||+|+|||++|+.|++.+..   ..-....+++..|
T Consensus         5 ~~~~~~~~~~~~~--------~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~---~~~~~~~~~~~~~   61 (198)
T d1rz3a_           5 DRIDFLCKTILAI--------KTAGRLVLGIDGLSRSGKTTLANQLSQTLRE---QGISVCVFHMDDH   61 (198)
T ss_dssp             HHHHHHHHHHHTS--------CCSSSEEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEEGGGG
T ss_pred             HHHHHHHHHHHhc--------cCCCCEEEEEECCCCCCHHHHHHHHHHHhcc---ccccceecccccc
Confidence            3455666666433        3445677889999999999999999998876   3334444454443

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.37  E-value=3.6e-05  Score=68.37  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=22.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +++|.||||+|||++|+.||+.|+-
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~   28 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGY   28 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4677899999999999999999966

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.36  E-value=4.8e-05  Score=66.48  Aligned_cols=25  Identities=32%  Similarity=0.627  Sum_probs=22.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++++||||||||++|+.|++.+..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~~   28 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLDN   28 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC
Confidence            6889999999999999999998754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=6.3e-05  Score=66.29  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=23.4

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +++++||||||||++++.+++.+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~   27 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKS   27 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHH
Confidence            6899999999999999999999865

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.30  E-value=4.8e-05  Score=67.08  Aligned_cols=25  Identities=40%  Similarity=0.468  Sum_probs=22.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +++|.||||+|||++|+.||+.+.-
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4778899999999999999999965

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=5.8e-05  Score=68.16  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=28.7

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      |..+++.||||+||||.|+.||+.+        .+.+++.++
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~--------g~~~i~~g~   34 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY--------GYTHLSAGE   34 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH--------CCEEEEHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh--------CCceEcHHH
Confidence            5688999999999999999999987        466777544

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=8.2e-05  Score=72.72  Aligned_cols=50  Identities=16%  Similarity=0.199  Sum_probs=36.9

Q ss_pred             CCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          231 GLSSRRQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       231 gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      |-..++.|-.+.++||+|+|||++|+.|+..|.... .......+.|..|-
T Consensus        73 ~~~~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~-~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          73 GTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP-EHRRVELITTDGFL  122 (308)
T ss_dssp             TCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST-TCCCEEEEEGGGGB
T ss_pred             cccCCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhc-CCCceEEEeeeeeE
Confidence            334556778999999999999999999999985300 12356677777775

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00089  Score=66.65  Aligned_cols=28  Identities=14%  Similarity=0.292  Sum_probs=23.8

Q ss_pred             CCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          301 PYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       301 p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      ++.+|++||+-.++......++..+..|
T Consensus       261 ~~d~lIIDEaSmv~~~l~~~ll~~~~~~  288 (359)
T d1w36d1         261 HLDVLVVDEASMIDLPMMSRLIDALPDH  288 (359)
T ss_dssp             SCSEEEECSGGGCBHHHHHHHHHTCCTT
T ss_pred             ccceeeehhhhccCHHHHHHHHHHhcCC
Confidence            4679999999999998888888877655

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.24  E-value=6.5e-05  Score=68.06  Aligned_cols=37  Identities=19%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +|.+++|.||||+|||++|+.||+.+        .+..++++++.
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~--------g~~~is~g~ll   43 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY--------GYTHLSTGDLL   43 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT--------CCEEEEHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh--------CCeeEeccHHH
Confidence            45689999999999999999999986        47778876653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00016  Score=64.46  Aligned_cols=79  Identities=11%  Similarity=0.140  Sum_probs=50.4

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCH
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANS  315 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~  315 (550)
                      .+|..++++|+||+|||++|+.++...        ...+++-.++...+   .+...+..++...  ..|++|... ..+
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~--------~~~~i~~D~~~~~~---~~~~~~~~~l~~g--~~vIiD~t~-~~~   77 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSA--------GYVHVNRDTLGSWQ---RCVSSCQAALRQG--KRVVIDNTN-PDV   77 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGG--------TCEEEEHHHHCSHH---HHHHHHHHHHHTT--CCEEEESCC-CSH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc--------CCEEEchHHHHHHH---HHHHHHHHHHHCC--CCceeeCcC-CCH
Confidence            356899999999999999999887654        35566654444322   2233444455543  357778665 455


Q ss_pred             HHHHHHHHhhhhc
Q 036633          316 SILNLLLKILKTD  328 (550)
Q Consensus       316 ~v~~~Ll~~ld~g  328 (550)
                      .....++++..+.
T Consensus        78 ~~R~~~~~~a~~~   90 (172)
T d1yj5a2          78 PSRARYIQCAKDA   90 (172)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            6666677766543

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.21  E-value=8e-05  Score=67.50  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=30.2

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      .|...++|.||||+|||++|+.||+.+        .+.+++++++-
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~~--------g~~~is~gdll   41 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKHF--------ELKHLSSGDLL   41 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHHB--------CCEEEEHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHHH--------CCeEEcHHHHH
Confidence            345677888999999999999999987        46677765543

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.21  E-value=0.00064  Score=66.72  Aligned_cols=82  Identities=17%  Similarity=0.319  Sum_probs=56.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEE-ecCCCCchh--hhhhHHh--------HHHHHHHhCCCCeEEe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHF-DMGNYTELE--SIKHFFD--------SLAALVKKRPYSVVLF  307 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~i-d~s~~~~~~--~~s~liG--------~lt~al~~~p~~Vlll  307 (550)
                      .+++++||+|+|||++.++|...+..    +..++.+ |-.|+.-.+  .+..+.+        .+..++|..| ..|++
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~----~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~p-d~iiv  241 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPK----EERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRP-DRIIL  241 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCT----TCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCC-SEEEE
T ss_pred             CCEEEEeeccccchHHHHHHhhhccc----ccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCC-CcccC
Confidence            47999999999999999999988755    3355555 444443111  1111111        4455677778 79999


Q ss_pred             ccccccCHHHHHHHHHhhhhc
Q 036633          308 DKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       308 DEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .|+-  +++... +++.+..|
T Consensus       242 gEiR--~~ea~~-~l~a~~tG  259 (323)
T d1g6oa_         242 GELR--SSEAYD-FYNVLCSG  259 (323)
T ss_dssp             SCCC--STHHHH-HHHHHHTT
T ss_pred             CccC--chhHHH-HHHHHHhc
Confidence            9997  456765 67888888

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.20  E-value=0.0022  Score=60.98  Aligned_cols=135  Identities=15%  Similarity=0.103  Sum_probs=74.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSIL  318 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~  318 (550)
                      ..++|+||+++|||+++.+|...++.       ...++-+.  .....+.+.          ...++++||...-. ...
T Consensus       105 n~~~l~G~~~tGKS~f~~~i~~~lg~-------~~~~~~~~--~~f~l~~l~----------~k~~~~~~e~~~~~-~~~  164 (267)
T d1u0ja_         105 NTIWLFGPATTGKTNIAEAIAHTVPF-------YGCVNWTN--ENFPFNDCV----------DKMVIWWEEGKMTA-KVV  164 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSC-------EEECCTTC--SSCTTGGGS----------SCSEEEECSCCEET-TTH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHhcc-------hhhccccC--CCccccccC----------CCEEEEEeCCCccc-cHH
Confidence            78999999999999999999999843       22222111  111222221          23589999987654 344


Q ss_pred             HHHHHhhhhccccccccC---CeEeecCCeEEEEeCCCChHHHHHhhhhhhHhhHHHHhccCCChhhhhhccceeEecCC
Q 036633          319 NLLLKILKTDFNRKATRG---IAAFDLTNTLIIMTSDLKDEQVYEVMLTATYGRVNEVTGSLFKPSLLKLLDKLVVIDLA  395 (550)
Q Consensus       319 ~~Ll~~ld~g~~~~l~d~---g~~vd~~~~iiI~TsN~g~~~~~~~~~~~~~~~~~~~l~~~f~p~ll~Rid~ii~f~~~  395 (550)
                      +.+-+++...  . ++-.   ...+.|..+.+++|||........  .+        .........|.+|+ .+|+|.-+
T Consensus       165 ~~~K~l~gGd--~-i~v~~K~k~~~~~~~~p~li~s~n~i~~~~~--~~--------~~~~~~~~~l~~R~-~~~~F~~~  230 (267)
T d1u0ja_         165 ESAKAILGGS--K-VRVDQKCKSSAQIDPTPVIVTSNTNMCAVID--GN--------STTFEHQQPLQDRM-FKFELTRR  230 (267)
T ss_dssp             HHHHHHHTTC--C-EEC------CCEECCCCEEEEESSCTTCEEE--TT--------EEECTTHHHHHTTE-EEEECCSC
T ss_pred             HHHHHhcCCC--c-eEeecccCCCcEeeCCeEEEEeCCCcccccC--CC--------ccccccchHhhhhE-EEEECCCc
Confidence            5666666544  2 3333   455677776566666543211000  00        00011235688999 78888743


Q ss_pred             CC-----CCHHHHHHHH
Q 036633          396 VP-----LLDTTRLLLR  407 (550)
Q Consensus       396 ~p-----L~~e~i~~I~  407 (550)
                      .|     ++.+++..++
T Consensus       231 ~p~~~~~i~~~e~k~f~  247 (267)
T d1u0ja_         231 LDHDFGKVTKQEVKDFF  247 (267)
T ss_dssp             CCTTSCCCCHHHHHHHH
T ss_pred             CCCccCCCCHHHHHHHH
Confidence            33     3345555554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.16  E-value=0.00041  Score=64.73  Aligned_cols=26  Identities=23%  Similarity=0.262  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.+.||+|+|||+|.++|+.....
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl~~p   57 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCLDKP   57 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCcchhhHhccCCCCC
Confidence            58899999999999999999987643

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.0013  Score=63.04  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=23.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.++||+|+|||+++++|+..+..
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~~p   88 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGELEA   88 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhCCCcC
Confidence            67889999999999999999987754

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.12  E-value=0.00047  Score=58.30  Aligned_cols=27  Identities=11%  Similarity=0.325  Sum_probs=20.0

Q ss_pred             CCCCeEEeccccccCHHHHHHHHHhhh
Q 036633          300 RPYSVVLFDKIEKANSSILNLLLKILK  326 (550)
Q Consensus       300 ~p~~VlllDEIeka~~~v~~~Ll~~ld  326 (550)
                      ..+++|++||+|..+.+....+..+++
T Consensus        93 ~~~~~vIiDE~H~~~~~~~~~~~~~l~  119 (136)
T d1a1va1          93 GAYDIIICDECHSTDATSILGIGTVLD  119 (136)
T ss_dssp             CCCSEEEEETTTCCSHHHHHHHHHHHH
T ss_pred             hcCCEEEEecccccCHHHHHHHHHHHH
Confidence            457899999999998876555544444

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.11  E-value=0.00011  Score=66.24  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=27.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ..++|.||||+|||++|+.||+.+        .+.+++++++
T Consensus         4 ~riil~G~pGSGKsT~a~~La~~~--------g~~~i~~gdl   37 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAKNF--------CVCHLATGDM   37 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH--------TCEEEEHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh--------CCeEEeHHHH
Confidence            356678999999999999999987        4677776543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00049  Score=64.26  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.+.||+|+|||++.++|+-.+..
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl~~p   52 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGLETI   52 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            58899999999999999999987643

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=9.9e-05  Score=65.91  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=26.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .++|.||||+|||++|+.||+.+        .+..++++++
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~--------g~~~i~~~~l   34 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL--------GIPQISTGEL   34 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH--------TCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH--------CCceEchHHH
Confidence            57889999999999999999998        3556665443

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.08  E-value=0.00044  Score=64.91  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=23.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+-++||+|+|||+|.++|+..+..
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~~p   54 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLIKP   54 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57889999999999999999988764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.06  E-value=0.00012  Score=65.18  Aligned_cols=33  Identities=21%  Similarity=0.350  Sum_probs=26.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .+++.||||+||||+|+.||+.+        .+..++++++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~--------~~~~i~~~~l   34 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY--------GIPHISTGDM   34 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH--------CCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH--------CCceechhHH
Confidence            47899999999999999999998        3556665543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.05  E-value=0.00015  Score=62.31  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .++++||||+|||++|+.|.+..
T Consensus         4 lIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            67899999999999999987654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.96  E-value=0.00016  Score=64.65  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=26.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .++|.||||+|||++|+.||+.+        .+..++++++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~--------g~~~is~gdl   34 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY--------GTPHISTGDM   34 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH--------CCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH--------CCceeeHHHH
Confidence            47889999999999999999998        3566665443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00029  Score=61.25  Aligned_cols=25  Identities=32%  Similarity=0.405  Sum_probs=23.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++.|+|+||+|||||++.|++.+..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~   28 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCA   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            7899999999999999999999876

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.94  E-value=0.0002  Score=63.19  Aligned_cols=25  Identities=12%  Similarity=0.217  Sum_probs=23.4

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++|.||||+|||++++.|++.+..
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999999865

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00017  Score=64.11  Aligned_cols=33  Identities=18%  Similarity=0.351  Sum_probs=26.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .++|.||||+|||++|+.||+.+        .+..++++++
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~--------~~~~i~~~~l   34 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY--------GIPQISTGDM   34 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH--------CCCEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh--------CCceechhhH
Confidence            46889999999999999999987        3566675543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00019  Score=64.09  Aligned_cols=33  Identities=24%  Similarity=0.511  Sum_probs=26.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .++|.||||+|||++|+.||+.+        .+..++++++
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~--------g~~~i~~~d~   36 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF--------HAAHLATGDM   36 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH--------CCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh--------CCceEecccc
Confidence            46788999999999999999997        3566776544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.90  E-value=0.00057  Score=64.05  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=23.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.+.||+|+|||++.++|+..+..
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl~~p   58 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGLEEP   58 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCC
Confidence            58899999999999999999987754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.84  E-value=0.00046  Score=60.97  Aligned_cols=25  Identities=16%  Similarity=0.217  Sum_probs=23.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .++|.|+||+|||++++.|++.|..
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999965

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00029  Score=64.29  Aligned_cols=33  Identities=33%  Similarity=0.535  Sum_probs=27.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      +++.+.||||+||+|+|+.||+.+        .|..++.++
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~--------gl~~iStGd   36 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEAL--------QWHLLDSGA   36 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH--------TCEEEEHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh--------CCcEECHHH
Confidence            378888999999999999999998        466666444

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.67  E-value=0.0008  Score=62.58  Aligned_cols=26  Identities=27%  Similarity=0.376  Sum_probs=23.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.++||+|+|||++.++|+..+..
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~~p   52 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFHVP   52 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCcCC
Confidence            58899999999999999999987754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.66  E-value=0.002  Score=60.86  Aligned_cols=26  Identities=38%  Similarity=0.510  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -++.|.||+|+|||+|+++|+-.+..
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl~~p   56 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGFLKA   56 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCCcC
Confidence            58899999999999999999987643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.64  E-value=0.0008  Score=61.69  Aligned_cols=44  Identities=23%  Similarity=0.292  Sum_probs=33.1

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +++.++.|+|.||+|||++|+.|++.++..  ...+.+.+|...+.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~--~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRD--RRVHAYRLDGDNIR   65 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEECHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHh--cCceEEEEcchHHH
Confidence            366899999999999999999999877420  12367777765543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.58  E-value=0.00052  Score=62.84  Aligned_cols=23  Identities=39%  Similarity=0.644  Sum_probs=20.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .+.+.||||+||||+|+.||+.+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            45677999999999999999998

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.55  E-value=0.001  Score=62.20  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=22.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|.||+|+|||++.++|+..+..
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~p   50 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCCC
Confidence            46778999999999999999988744

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.48  E-value=0.0015  Score=61.20  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.++||+|+|||+++++|+..+..
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl~~p   55 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGLEEP   55 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhcCCCC
Confidence            58899999999999999999987643

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.45  E-value=0.0023  Score=59.10  Aligned_cols=37  Identities=22%  Similarity=0.343  Sum_probs=29.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      ...+++||||+|||++|..+|.....   ...+.+.+++.
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~~~---~~~~~~~is~e   63 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENACA---NKERAILFAYE   63 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEESS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHH---hccccceeecc
Confidence            68999999999999999999988765   44456666543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.45  E-value=0.0029  Score=59.14  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=23.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.|.||+|+||||+.++|+-.+..
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl~~p   58 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGLVRA   58 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            58899999999999999999987743

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.44  E-value=0.0022  Score=58.27  Aligned_cols=26  Identities=38%  Similarity=0.523  Sum_probs=22.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.++||+|+|||++.++|+..+..
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCChHHHHHHHHhccccc
Confidence            57789999999999999999987653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.30  E-value=0.0059  Score=57.60  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=22.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -.+.++||+|+|||+++++|+-.+.
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcc
Confidence            6889999999999999999987653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.004  Score=58.11  Aligned_cols=26  Identities=15%  Similarity=0.227  Sum_probs=22.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.|.||+|+|||+++++|+-.+..
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~Gl~~p   57 (240)
T d3dhwc1          32 QIYGVIGASGAGKSTLIRCVNLLERP   57 (240)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCccc
Confidence            57889999999999999999876643

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.15  E-value=0.0052  Score=58.42  Aligned_cols=29  Identities=17%  Similarity=0.282  Sum_probs=25.2

Q ss_pred             CCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          300 RPYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       300 ~p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .++.+|++||+..+++..+..+..+..++
T Consensus       205 ~~~~~i~vDE~QD~~~~~~~~l~~~~~~~  233 (306)
T d1uaaa1         205 NKIRYLLVDEYQDTNTSQYELVKLLVGSR  233 (306)
T ss_dssp             TTCSEEEESCGGGCBHHHHHHHHHHHTTT
T ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhcccCC
Confidence            46789999999999999999888877665

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0013  Score=59.15  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=21.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +++|+||||+|||++++.|++...
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            478999999999999999998864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0055  Score=58.01  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=31.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      ....|+||||+|||++|-.++...-.   .....+.+|..+
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~q~---~g~~~vyidtE~   92 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEH   92 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSC
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHc---CCCEEEEEcccc
Confidence            68899999999999999988887766   555778888654

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.08  E-value=0.006  Score=55.29  Aligned_cols=25  Identities=36%  Similarity=0.268  Sum_probs=20.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..++.+|+|+|||.+|-.++..+..
T Consensus        87 ~~ll~~~tG~GKT~~a~~~~~~~~~  111 (206)
T d2fz4a1          87 RGCIVLPTGSGKTHVAMAAINELST  111 (206)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHSCS
T ss_pred             CcEEEeCCCCCceehHHhHHHHhcC
Confidence            4578899999999999888877644

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0014  Score=58.66  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=21.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +++|+||||+|||++++.|++...
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            478999999999999999998764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.01  E-value=0.0095  Score=51.75  Aligned_cols=50  Identities=8%  Similarity=0.046  Sum_probs=34.2

Q ss_pred             cHHHHHHHHHHHhcchhhhcCCCCcCCC-eeEEEeccCCCcHHHHHHHHHHHhccC
Q 036633          211 QNDAIDVIFEALTKPKAAKKGLSSRRQL-GLFLFAGPNCSGKAELAKAIANELYDN  265 (550)
Q Consensus       211 Q~~ai~~i~~~l~~~~~~~~gl~~~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~  265 (550)
                      -+.+..++...+...   -.+  ...+| .+++|.|+=|+|||+++|.+++.+...
T Consensus        10 ~e~~t~~lg~~la~~---l~~--~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          10 DEFSMLRFGKKFAEI---LLK--LHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SHHHHHHHHHHHHHH---HHH--HCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHH---HHh--ccCCCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            344555555555543   100  12245 588999999999999999999999653

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.002  Score=58.61  Aligned_cols=43  Identities=19%  Similarity=0.260  Sum_probs=30.3

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhccCCC--CCCceeEEecCCC
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYDNND--NDNHLIHFDMGNY  280 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~--~~~~li~id~s~~  280 (550)
                      |-++.++||+|+||||+|+.|++.+.....  .......+.|..|
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~y   46 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF   46 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccc
Confidence            567889999999999999999999854110  0113445666555

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.90  E-value=0.0021  Score=57.00  Aligned_cols=23  Identities=17%  Similarity=0.632  Sum_probs=21.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .++|+||||+|||++++.|.+..
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            68899999999999999998875

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.014  Score=54.08  Aligned_cols=45  Identities=27%  Similarity=0.217  Sum_probs=36.3

Q ss_pred             cCcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          209 FGQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       209 iGQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.|..|++.|...+...           +|...|++|.+|+|||+++-..+.....
T Consensus        58 ~~Q~~~~~~i~~~~~~~-----------~~~~~LL~GdvGsGKT~V~~~a~~~~~~  102 (233)
T d2eyqa3          58 PDQAQAINAVLSDMCQP-----------LAMDRLVCGDVGFGKTEVAMRAAFLAVD  102 (233)
T ss_dssp             HHHHHHHHHHHHHHHSS-----------SCCEEEEECCCCTTTHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHhcc-----------CccCeEEEcCCCCCcHHHHHHHHHHHHH
Confidence            45888888888888876           6788999999999999998766655443

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.77  E-value=0.0067  Score=55.00  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      ..++|+||||+|||++|..++.
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            6889999999999999977654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.70  E-value=0.0079  Score=54.04  Aligned_cols=18  Identities=39%  Similarity=0.521  Sum_probs=15.7

Q ss_pred             eEEEeccCCCcHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKA  257 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~  257 (550)
                      ++++.+|||+|||++|-.
T Consensus        42 ~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             CEEEECSSHHHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHHHH
Confidence            789999999999998743

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.66  E-value=0.0094  Score=56.46  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=31.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      ....|+||+|+|||++|-.++...-.   .....+.||...
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~aqk---~g~~v~yiDtE~   95 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEH   95 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSC
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHh---CCCEEEEEECCc
Confidence            58899999999999999998887766   556788888654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.60  E-value=0.0096  Score=54.21  Aligned_cols=42  Identities=14%  Similarity=0.161  Sum_probs=29.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccC---CCCCCceeEEecCCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDN---NDNDNHLIHFDMGNY  280 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~---~~~~~~li~id~s~~  280 (550)
                      .+.+|+||||+|||++|..++...-..   +....+.+.++...-
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~   79 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT   79 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecch
Confidence            589999999999999998887543110   113446677775543

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.026  Score=52.09  Aligned_cols=24  Identities=29%  Similarity=0.500  Sum_probs=21.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      -.+.+.||+|+|||++.++|+...
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            578899999999999999999754

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.53  E-value=0.0025  Score=56.99  Aligned_cols=30  Identities=23%  Similarity=0.117  Sum_probs=26.2

Q ss_pred             cCCCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          235 RRQLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       235 ~~~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+|..+.|.|+.|+|||++++.|++.+..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            347788999999999999999999998754

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.50  E-value=0.012  Score=55.62  Aligned_cols=38  Identities=18%  Similarity=0.221  Sum_probs=31.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGN  279 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~  279 (550)
                      ....|+||||+|||++|-.++.....   .....+.||...
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~~~q~---~g~~~vyIDtE~   98 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVANAQA---AGGVAAFIDAEH   98 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHHHH---TTCEEEEEESSC
T ss_pred             eeEEEecCCCcHHHHHHHHHHHHHhc---CCCEEEEEECCc
Confidence            68899999999999999887776655   555778889665

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.025  Score=55.06  Aligned_cols=28  Identities=18%  Similarity=0.129  Sum_probs=24.7

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +...+-++||||+|||+|...|+..+..
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~   80 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIR   80 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            3478999999999999999999988765

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.0041  Score=55.20  Aligned_cols=23  Identities=9%  Similarity=0.336  Sum_probs=20.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .++|+||||+|||++++.|.+..
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cEEEECCCCCCHHHHHHHHHHhC
Confidence            68889999999999999998764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.32  E-value=0.021  Score=53.55  Aligned_cols=39  Identities=8%  Similarity=0.020  Sum_probs=28.1

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHh-ccCCCCCCceeEEecC
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANEL-YDNNDNDNHLIHFDMG  278 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l-~~~~~~~~~li~id~s  278 (550)
                      +| ..++|.|+||+|||+++..+|..+ ..   ...+...+.+.
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~~---~g~~v~~~s~E   73 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLE   73 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHHHHT---SCCCEEEEESS
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhhhhh---cccceeEeeec
Confidence            45 588999999999999999998654 23   23355555543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.27  E-value=0.0079  Score=52.13  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++-++|++|+|||+|+..|+..|..
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            5779999999999999999999876

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.22  E-value=0.041  Score=48.63  Aligned_cols=23  Identities=30%  Similarity=0.205  Sum_probs=18.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      +.++++|||+|||.++-.++...
T Consensus        25 n~lv~~pTGsGKT~i~~~~~~~~   47 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAMMIAEYR   47 (200)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHHHHHHHH
Confidence            56899999999999877666544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.0054  Score=55.75  Aligned_cols=23  Identities=26%  Similarity=0.582  Sum_probs=21.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .++|+||||||||++.+.|.+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            68899999999999999998875

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.12  E-value=0.0045  Score=58.29  Aligned_cols=101  Identities=11%  Similarity=0.161  Sum_probs=54.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH-HhccCC---------------CCCCceeEEecCCCCchhhhhhHH-hHHHHHHHh-C
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN-ELYDNN---------------DNDNHLIHFDMGNYTELESIKHFF-DSLAALVKK-R  300 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~-~l~~~~---------------~~~~~li~id~s~~~~~~~~s~li-G~lt~al~~-~  300 (550)
                      ..++|+|.||+|||++..+|.. ..+..+               .....+.-+|...+.+.+.....+ ......... .
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~  112 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKT  112 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCE
T ss_pred             cEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCC
Confidence            7899999999999999999863 222100               112245556777765443322211 112222221 3


Q ss_pred             CCCeEEecccc--ccCHH---HHHHHHHhhhhccccccccCCeEeecCCeEEEEeC
Q 036633          301 PYSVVLFDKIE--KANSS---ILNLLLKILKTDFNRKATRGIAAFDLTNTLIIMTS  351 (550)
Q Consensus       301 p~~VlllDEIe--ka~~~---v~~~Ll~~ld~g~~~~l~d~g~~vd~~~~iiI~Ts  351 (550)
                      +..++|+..++  +....   +...+...+.++  .          +++++|++|-
T Consensus       113 ~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~----------~~~~ivv~t~  156 (257)
T d1h65a_         113 IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--I----------WNKAIVALTH  156 (257)
T ss_dssp             ECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--G----------GGGEEEEEEC
T ss_pred             CCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--h----------hhCEEEEEEC
Confidence            34566766554  34443   445555555444  2          2567777764

>d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase domain of protease Lon (La)
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.018  Score=45.35  Aligned_cols=66  Identities=15%  Similarity=0.202  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhccCCCc--cccCCHHHHHHHHhcCc-ccCCCcccHHHHHHcc--hhhHHHHHhh
Q 036633          397 PLLDTTRLLLREWACEETKRRNNDSKAV--IVCPSTSALVHIASNAA-RKYGQNGEGLKRWMDQ--RPSADHVIDK  467 (550)
Q Consensus       397 pL~~e~i~~I~~~~l~~~~~~l~~~~~~--~l~~~~~a~~~L~~~~~-~~~GaN~R~L~~~i~~--~~la~~~l~~  467 (550)
                      .++.+|...|+..+|  +.+.+...|+-  .+.++++++.+|.+ .| .+.|.  |.|++.|..  +.++..++.+
T Consensus         2 GYt~~EK~~Iak~yL--iPk~l~~~gl~~~~i~i~~~~l~~iI~-~YtrEaGV--R~Ler~i~~I~Rk~a~~~~~~   72 (94)
T d1qzma_           2 GYTEDEKLNIAKRHL--LPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGV--RGLEREISKLCRKAVKQLLLD   72 (94)
T ss_dssp             CCCHHHHHHHHHHTH--HHHHHHHTTCCTTTEEECHHHHHHHHH-HHCCCSSS--HHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHh--HHHHHHHhccccccccchHHHHHHHHH-HHccHHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence            578999999999999  55555555552  48999999999998 45 67788  999999998  5555555544

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.006  Score=54.11  Aligned_cols=25  Identities=16%  Similarity=0.216  Sum_probs=22.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .+.+++||||+|||++|..+|....
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999987654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.041  Score=50.78  Aligned_cols=25  Identities=24%  Similarity=0.444  Sum_probs=21.7

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ..++++||.+.|||++.|+++-...
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~~~   66 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALIAL   66 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHHHH
Confidence            5789999999999999999876653

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.82  E-value=0.005  Score=58.95  Aligned_cols=42  Identities=5%  Similarity=0.178  Sum_probs=29.4

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      ++.++.++|+||+|||++|++|.+.+..   ..-+...+.+..|-
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~---~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRR---EGVKAVSIEGDAFH   44 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHH---HTCCEEEEEGGGGB
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhh---cCCCeEEEeCCCCC
Confidence            3458999999999999999999998865   33344566666663

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.77  E-value=0.015  Score=55.55  Aligned_cols=45  Identities=20%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYT  281 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~  281 (550)
                      +|..+-+.||+|+|||++|..|...|...-.....+..+.+.+|-
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            567888999999999999998877762200012245566776764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.47  E-value=0.0094  Score=54.79  Aligned_cols=25  Identities=28%  Similarity=0.270  Sum_probs=22.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ...+++||||+|||++|-.++...-
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            6899999999999999998887653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.45  E-value=0.058  Score=52.18  Aligned_cols=39  Identities=15%  Similarity=0.102  Sum_probs=28.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      ..+-++||||+|||++...+.+.+-..+ ..-.++.+|.+
T Consensus        52 ~~igitG~pGaGKSTli~~l~~~~~~~g-~~vaViavDps   90 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGSLLTAAG-HKVAVLAVDPS   90 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEEECGG
T ss_pred             eEEeeeCCCCCCHHHHHHHHHHHHhhcC-Cceeeeecccc
Confidence            7889999999999999999998764311 22244555544

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.03  Score=47.62  Aligned_cols=21  Identities=33%  Similarity=0.477  Sum_probs=18.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      .++|+|+||||||+|.++|..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999998863

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.40  E-value=0.01  Score=50.25  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=20.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -++|+|+||||||+|...+...-+
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~~   25 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGEI   25 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999876554

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.37  E-value=0.012  Score=52.05  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=21.1

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHH
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      .|-.+.++|++|+|||++|+.|.+
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999965

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.013  Score=53.67  Aligned_cols=24  Identities=17%  Similarity=0.199  Sum_probs=21.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .+.+++||||+|||++|..++...
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            589999999999999999998754

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.025  Score=51.16  Aligned_cols=35  Identities=14%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      .-+.|.||.|+||||+++.|++.|..   ...+.+.+.
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~---~g~~v~~~~   38 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCA---AGHRAELLR   38 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEe
Confidence            35678899999999999999999876   333455544

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=93.97  E-value=0.013  Score=50.71  Aligned_cols=25  Identities=24%  Similarity=0.539  Sum_probs=21.2

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHH
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      ++..-++|+|+||||||+|...+..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3557899999999999999888754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.91  E-value=0.016  Score=48.87  Aligned_cols=24  Identities=33%  Similarity=0.581  Sum_probs=20.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      |-++|+|+||||||+|...+...-
T Consensus         1 ~KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           1 GKLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999987643

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.87  E-value=0.02  Score=52.08  Aligned_cols=25  Identities=32%  Similarity=0.498  Sum_probs=22.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ++++.||+|+|||+|.+.|.+.+..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~   26 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLED   26 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhh
Confidence            6899999999999999999987754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.85  E-value=0.097  Score=45.39  Aligned_cols=22  Identities=32%  Similarity=0.270  Sum_probs=19.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      ..+.|+|++|||||+|..+|..
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            5789999999999999998864

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.03  Score=52.65  Aligned_cols=50  Identities=16%  Similarity=0.277  Sum_probs=38.1

Q ss_pred             CCCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCCCchhhhhhHHh
Q 036633          236 RQLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNYTELESIKHFFD  291 (550)
Q Consensus       236 ~~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~~~~~~~s~liG  291 (550)
                      +.|..++|.|--|||||++|-.+|..+-.   ...+..-+|+.--   ++.+.++|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~---~G~rVLlvD~Dp~---~~l~~~lg   55 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAE---QGKRVLLVSTDPA---SNVGQVFS   55 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCTT---CCHHHHTT
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHH---CCCCEEEEeCCCC---CCHHHHhC
Confidence            35677889999999999999999999977   5567888887642   34444554

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.78  E-value=0.018  Score=52.29  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ...+++||||+|||++|..+|..+..
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            68899999999999999999877644

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.77  E-value=0.024  Score=52.08  Aligned_cols=20  Identities=35%  Similarity=0.430  Sum_probs=18.3

Q ss_pred             eEEEeccCCCcHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la  259 (550)
                      ..+|+|+||||||+|..+|.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHhhc
Confidence            67899999999999999885

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.67  E-value=0.026  Score=53.09  Aligned_cols=43  Identities=23%  Similarity=0.166  Sum_probs=35.1

Q ss_pred             CcHHHHHHHHHHHhcchhhhcCCCCcCCCeeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          210 GQNDAIDVIFEALTKPKAAKKGLSSRRQLGLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       210 GQ~~ai~~i~~~l~~~~~~~~gl~~~~~p~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +|..|+..|...+...           .|...|+.|.+|+|||.+|-..+....
T Consensus        87 ~Q~~ai~ei~~d~~~~-----------~~m~rLL~GdvGSGKT~Va~~a~~~~~  129 (264)
T d1gm5a3          87 AQKRAHQEIRNDMISE-----------KPMNRLLQGDVGSGKTVVAQLAILDNY  129 (264)
T ss_dssp             HHHHHHHHHHHHHHSS-----------SCCCCEEECCSSSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhcc-----------CcceeeeeccccccccHHHHHHHHHHH
Confidence            4888999888888766           677889999999999999876665443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.51  E-value=0.019  Score=48.79  Aligned_cols=25  Identities=16%  Similarity=0.130  Sum_probs=21.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .-++|+|+||||||+|.+.+...-+
T Consensus         6 ~kI~ivG~~~vGKSSLi~~~~~~~~   30 (169)
T d1upta_           6 MRILILGLDGAGKTTILYRLQVGEV   30 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4689999999999999998876443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.47  E-value=0.027  Score=53.75  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=19.4

Q ss_pred             eeEEEeccCCCcHHHHH-HHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELA-KAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lA-k~la~~l~~  264 (550)
                      +++++.||||||||+++ ..++..+..
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri~~ll~~   51 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRIAYLMAE   51 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEecCCccHHHHHHHHHHHHHHc
Confidence            57899999999999854 445555543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.39  E-value=0.022  Score=50.44  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=19.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      ..++++|+||+|||+|.++|.
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhc
Confidence            479999999999999999996

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.22  E-value=0.027  Score=48.68  Aligned_cols=25  Identities=32%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             cCCCeeEEEeccCCCcHHHHHHHHH
Q 036633          235 RRQLGLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       235 ~~~p~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      |++..-++++|++|||||+|...+.
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHh
Confidence            3444789999999999999998774

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=93.21  E-value=0.02  Score=49.12  Aligned_cols=22  Identities=27%  Similarity=0.447  Sum_probs=19.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      .++|+|++|||||+|.+.+...
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            5899999999999999988654

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.21  E-value=0.037  Score=49.20  Aligned_cols=34  Identities=15%  Similarity=0.309  Sum_probs=26.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEe
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFD  276 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id  276 (550)
                      .+.|.|+.|+||||+++.|++.|..   ...+++.+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~---~g~~v~~~~   35 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRA---AGRSVATLA   35 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH---CCCCEEEEe
Confidence            3678999999999999999999865   223445444

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.18  E-value=0.022  Score=49.60  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      +.++|+|+||+|||+|..+|..
T Consensus         1 a~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           1 ATIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999863

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.06  E-value=0.027  Score=49.65  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=20.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..+||.||||+|||++|-.+.+.
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            57899999999999999887764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.05  E-value=0.025  Score=48.91  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      +.++++|+||+|||+|.++|..
T Consensus         1 a~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           1 ATVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999863

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.95  E-value=0.015  Score=54.03  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -.+.+.||+|+|||++.++|+.....
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~~p   57 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLDVP   57 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcCC
Confidence            58899999999999999999987643

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=92.92  E-value=0.023  Score=50.13  Aligned_cols=23  Identities=30%  Similarity=0.317  Sum_probs=20.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..+||.||||+|||++|-.+.+.
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            47899999999999999888753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.91  E-value=0.026  Score=48.98  Aligned_cols=22  Identities=18%  Similarity=0.347  Sum_probs=18.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      -++++|++|||||+|+..+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3689999999999999987654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.90  E-value=0.026  Score=48.41  Aligned_cols=22  Identities=14%  Similarity=0.318  Sum_probs=19.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      -++|+|+||||||+|+..+...
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887753

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.87  E-value=0.19  Score=45.79  Aligned_cols=74  Identities=20%  Similarity=0.313  Sum_probs=41.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc--CC---CCCC----c----eeEEecCCCCchhhhhhHHh---HHHHHHHh-CCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD--NN---DNDN----H----LIHFDMGNYTELESIKHFFD---SLAALVKK-RPY  302 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~--~~---~~~~----~----li~id~s~~~~~~~~s~liG---~lt~al~~-~p~  302 (550)
                      .++++||...|||++.|+++-...-  .|   ..+.    +    +.++...+-.. ...|.+..   .+...++. .+.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~~~~~~d~~~-~~~StF~~el~~~~~il~~~~~~  115 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLA-GGKSTFMVEMEEVALILKEATEN  115 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC-------CCSHHHHHHHHHHHHHHHCCTT
T ss_pred             EEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecceEEEEECCCcccc-CCccHHHHhHHHHHHHhccCCCC
Confidence            6899999999999999988765532  11   0000    1    11111111110 01222222   44555554 567


Q ss_pred             CeEEeccccccC
Q 036633          303 SVVLFDKIEKAN  314 (550)
Q Consensus       303 ~VlllDEIeka~  314 (550)
                      ++|++||+.+-.
T Consensus       116 sLvliDE~~~gT  127 (224)
T d1ewqa2         116 SLVLLDEVGRGT  127 (224)
T ss_dssp             EEEEEESTTTTS
T ss_pred             cEEeecccccCc
Confidence            899999998864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=92.85  E-value=0.027  Score=48.33  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=20.4

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -++|+|++|||||+|...+...-+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~~~   27 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASGQF   27 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            578999999999999998876544

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.029  Score=52.28  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=21.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ...+++|+||+|||+++-.+|..+-
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5778999999999999999987653

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.80  E-value=0.028  Score=48.60  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=20.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -++|+|++|||||+|...+...-+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~~~   30 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADDSF   30 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCcCHHHHHHHHHcCCC
Confidence            478999999999999999876544

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.77  E-value=0.029  Score=49.76  Aligned_cols=22  Identities=32%  Similarity=0.596  Sum_probs=19.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      .++|+|+||+|||+|...|...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.75  E-value=0.026  Score=49.46  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=18.4

Q ss_pred             eEEEeccCCCcHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      -++++|++|||||+|++.+..
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            478999999999999988764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.70  E-value=0.034  Score=50.77  Aligned_cols=27  Identities=15%  Similarity=0.204  Sum_probs=24.0

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |.-+.|-|+.|||||++++.|++.+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            557789999999999999999999854

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.029  Score=50.34  Aligned_cols=25  Identities=16%  Similarity=0.318  Sum_probs=22.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -+.|-|+.|+||||+++.|++.|..
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~   28 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQ   28 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3568899999999999999999865

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.03  Score=48.13  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=20.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -++++|++|||||+|...+...-|.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~~f~   29 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTGTFI   29 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCC
Confidence            5789999999999999988765443

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=92.56  E-value=0.036  Score=47.72  Aligned_cols=23  Identities=13%  Similarity=0.244  Sum_probs=20.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..++|+|.||||||+|...+...
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            68999999999999999988753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.52  E-value=0.032  Score=47.96  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=20.4

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -++++|++|||||++++.+...-+.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~~~~   30 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEKKFM   30 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCC
Confidence            4789999999999999988764433

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.40  E-value=0.033  Score=48.78  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=20.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ..+||.||||+|||++|-.+.+.
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            57899999999999999887765

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.033  Score=48.08  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=20.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -++|+|++|||||+|.+.+...-+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~~f   30 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQGLF   30 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCC
Confidence            478999999999999999886544

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.035  Score=48.22  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=19.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      -++|+|++|||||+|+..+...
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999987653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.25  E-value=0.037  Score=49.34  Aligned_cols=24  Identities=33%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      +++|+|+||||||+|...+...-+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~   25 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQY   25 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            689999999999999998876433

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.21  E-value=0.047  Score=47.29  Aligned_cols=26  Identities=15%  Similarity=0.250  Sum_probs=21.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      --++++|.+|||||+|.+.+...-|.
T Consensus         7 ~Kv~lvG~~~vGKTsLi~r~~~~~f~   32 (173)
T d2fn4a1           7 HKLVVVGGGGVGKSALTIQFIQSYFV   32 (173)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCC
Confidence            57899999999999999887764443

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.18  E-value=0.044  Score=47.63  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      +.++|+|+||||||++.++|..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            6899999999999999999864

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=0.086  Score=49.97  Aligned_cols=26  Identities=27%  Similarity=0.254  Sum_probs=23.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ...++.||+|||||+++..+++....
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~~~   69 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSIAY   69 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence            68899999999999999999987643

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.09  E-value=0.044  Score=54.68  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=29.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      .+++++|+||+|||++++.+...+..   ...+++.+|..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~---~g~~~iiiD~k   87 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLL---RGDRMVIVDPN   87 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHH---TTCEEEEEEET
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHh---CCCCEEEEeCC
Confidence            67999999999999998877666655   55578888853

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.038  Score=47.47  Aligned_cols=25  Identities=16%  Similarity=0.312  Sum_probs=20.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -++++|++|||||+|...+...-|.
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~~~~   29 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQNHFV   29 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCC
Confidence            4789999999999999988765443

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.04  Score=47.48  Aligned_cols=25  Identities=16%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -++++|++|||||+|+..+...-|.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~~f~   32 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKGQFH   32 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCC
Confidence            5789999999999999998865443

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.04  Score=47.61  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=20.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      +.++|+|.||||||+|.++|..
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            6789999999999999999964

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.017  Score=52.61  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=22.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -+.|-||.|+|||++|+.|++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhc
Confidence            5789999999999999999998744

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.04  Score=47.67  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.2

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      -++|+|++|||||+++..+...
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.91  E-value=0.041  Score=47.48  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=19.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      -++++|++|||||+|...+...-
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~~   26 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVNDK   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHcCC
Confidence            37899999999999999876533

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.90  E-value=0.042  Score=47.38  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=20.2

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -++++|++|||||+|.+.+...-|
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~~f   27 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTKRF   27 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCC
Confidence            478999999999999998876544

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.043  Score=47.10  Aligned_cols=24  Identities=21%  Similarity=0.476  Sum_probs=19.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -++|+|.+|||||+|...+...-|
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~~f   28 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCENKF   28 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCC
Confidence            368999999999999998875443

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.042  Score=47.36  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=19.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      -++|+|.+|||||+|.+.+...-
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~~   29 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQSY   29 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999887543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.71  E-value=0.045  Score=46.71  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=20.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -++++|++|||||+|...+...-+
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~~~   27 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAGRF   27 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCC
Confidence            478999999999999998875433

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.57  E-value=0.046  Score=46.81  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=19.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      -++++|++|||||+|.+.+...-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            37899999999999999887643

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.57  E-value=0.046  Score=46.86  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=20.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .-++++|++|||||+|...+...-|
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~f   29 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQF   29 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC
Confidence            4578899999999999998875433

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.048  Score=46.94  Aligned_cols=22  Identities=18%  Similarity=0.253  Sum_probs=19.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      -++++|++|||||++++.+...
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999987654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.52  E-value=0.046  Score=47.04  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=18.4

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      -++++|++|||||+|...+...
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3689999999999998877643

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.50  E-value=0.046  Score=47.09  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=18.0

Q ss_pred             EEEeccCCCcHHHHHHHHHHH
Q 036633          241 FLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      ++++|++|||||+|++.+...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            688999999999999887643

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.47  E-value=0.19  Score=42.15  Aligned_cols=81  Identities=14%  Similarity=0.185  Sum_probs=46.4

Q ss_pred             EEeccCCCcHHH-HHHHHHHHhccCCCCCCceeEEecCC---CCchhhhhhHHh------------HHHHHHHh----CC
Q 036633          242 LFAGPNCSGKAE-LAKAIANELYDNNDNDNHLIHFDMGN---YTELESIKHFFD------------SLAALVKK----RP  301 (550)
Q Consensus       242 Lf~Gp~GvGKT~-lAk~la~~l~~~~~~~~~li~id~s~---~~~~~~~s~liG------------~lt~al~~----~p  301 (550)
                      +++||-.+|||+ |.+.+.++-..    ..+.+.++-+.   |.+. -.++ .|            .+.+.+..    ..
T Consensus         6 ~i~GpMfsGKTteLi~~~~~~~~~----~~kv~~ikp~~D~R~~~~-i~s~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLHRLEYA----DVKYLVFKPKIDTRSIRN-IQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE   79 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHHHHHHT----TCCEEEEEECCCGGGCSS-CCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred             EEEccccCHHHHHHHHHHHHHHHC----CCcEEEEEEcccccccce-EEcc-cCceeeeEEeccchhhHHHHHhhccccC
Confidence            678999999999 88887776544    22444444331   1111 0010 11            33333332    24


Q ss_pred             CCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          302 YSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       302 ~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      +.+|++||+.=++..+...+..+...|
T Consensus        80 ~dvI~IDE~QFf~d~i~~~~~~~~~~g  106 (139)
T d2b8ta1          80 TKVIGIDEVQFFDDRICEVANILAENG  106 (139)
T ss_dssp             CCEEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred             cCEEEechhhhcchhHHHHHHHHHhcC
Confidence            579999999999754544444444555

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.38  E-value=0.064  Score=46.19  Aligned_cols=26  Identities=15%  Similarity=0.180  Sum_probs=21.4

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      .| --++++|++|||||++...+...-
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~   28 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKI   28 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            46 567899999999999999887543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.05  Score=47.20  Aligned_cols=25  Identities=16%  Similarity=0.301  Sum_probs=20.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -++++|++|||||+|...+...-|.
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~~f~   28 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKDQFP   28 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCC
Confidence            4688899999999999888765443

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.30  E-value=0.15  Score=47.35  Aligned_cols=41  Identities=27%  Similarity=0.276  Sum_probs=33.9

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      ...++++.|-=|||||++|-.||..+-.   .....+.+|+.-.
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~---~G~rVllvD~Dp~   59 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLAD---MGFDVHLTTSDPA   59 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESCCC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEeCCCC
Confidence            3378899999999999999999988877   5557888888743

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=91.28  E-value=0.064  Score=47.76  Aligned_cols=20  Identities=25%  Similarity=0.124  Sum_probs=16.7

Q ss_pred             eEEEeccCCCcHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la  259 (550)
                      ++++.-|||+|||.++....
T Consensus        42 ~vlv~apTGsGKT~~~~~~~   61 (206)
T d1oywa2          42 DCLVVMPTGGGKSLCYQIPA   61 (206)
T ss_dssp             CEEEECSCHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCcchhhhhh
Confidence            78999999999999875444

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.22  E-value=0.051  Score=47.04  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=18.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      -++|+|++|||||+|+..+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.21  E-value=0.053  Score=46.24  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             EEEeccCCCcHHHHHHHHHHHh
Q 036633          241 FLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       241 lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ++++|.+|||||+|.+.+...-
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~~   24 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYDS   24 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999887543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.051  Score=47.66  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             cCCC-eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          235 RRQL-GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       235 ~~~p-~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      |+.+ --++++|.+|||||+|...+...-|
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f   34 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAF   34 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCC
Confidence            4444 6689999999999999988775443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.19  E-value=0.026  Score=52.03  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=18.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      ...+|+|+||||||+|..+|.-
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC
T ss_pred             ceEEEECCCCccHHHHHHhhcc
Confidence            3567999999999999988863

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=91.18  E-value=0.048  Score=47.47  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=19.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      .-++|+|++|||||++.+.+.
T Consensus        18 ~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          18 LRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            789999999999999998764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.18  E-value=0.07  Score=48.65  Aligned_cols=31  Identities=23%  Similarity=0.443  Sum_probs=25.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      .+-|+|+.|+||||+|+.|++.+        .+..+|++
T Consensus         3 iIgiTG~igSGKsTva~~l~e~~--------g~~~i~~a   33 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSNY--------SAVKYQLA   33 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS--------CEEECCTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC--------CCeEEccc
Confidence            57799999999999999998864        35666644

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.17  E-value=0.055  Score=46.38  Aligned_cols=25  Identities=16%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -++++|.+|||||+|.+.+...-|.
T Consensus         5 KivvvG~~~vGKTsli~r~~~~~f~   29 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQGIFV   29 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC
Confidence            4789999999999999988765443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.17  E-value=0.02  Score=49.91  Aligned_cols=26  Identities=23%  Similarity=0.257  Sum_probs=23.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +..+|+||+|+|||++..+|.-.|++
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~g   50 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALIP   50 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            56789999999999999999999887

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.056  Score=46.71  Aligned_cols=24  Identities=17%  Similarity=0.183  Sum_probs=20.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      --++|+|++|||||++...+...-
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~   30 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNK   30 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            458999999999999998887643

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.06  E-value=0.056  Score=47.14  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=18.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      -++++|.+|||||+|+..+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999988865

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.03  E-value=0.72  Score=45.38  Aligned_cols=23  Identities=17%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHH
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      .|..+.++|.||+|||++..+|-
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            45789999999999999999985

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.99  E-value=0.056  Score=47.15  Aligned_cols=25  Identities=20%  Similarity=0.389  Sum_probs=20.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -++|+|++|||||++...+..--|.
T Consensus         4 KivliG~~~vGKTsli~r~~~~~f~   28 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKDCFP   28 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCC
Confidence            4689999999999999888765443

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.89  E-value=0.061  Score=46.11  Aligned_cols=24  Identities=13%  Similarity=0.245  Sum_probs=20.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -++++|.+|||||+|.+.+...-|
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~~f   29 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVEDSF   29 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCC
Confidence            578999999999999998876444

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.83  E-value=0.059  Score=47.60  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=19.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHh
Q 036633          240 LFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      -++++|++|||||+|...+...-
T Consensus         8 KivvvG~~~vGKTsli~~l~~~~   30 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDDT   30 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHhhCC
Confidence            47899999999999999887543

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.77  E-value=0.077  Score=47.91  Aligned_cols=26  Identities=23%  Similarity=0.362  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      .-+.|-|+.|+||||+++.|++.|..
T Consensus         4 k~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            45779999999999999999999854

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.75  E-value=0.057  Score=46.40  Aligned_cols=24  Identities=13%  Similarity=0.322  Sum_probs=19.5

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -++|+|++|||||+|...+...-|
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~~f   28 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSNDF   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCC
Confidence            478999999999999888765433

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.74  E-value=0.064  Score=46.51  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      --++++|++|||||+|.+.+...-+
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~~~~   32 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTDDTF   32 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCC
Confidence            3589999999999999998876443

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=90.74  E-value=0.063  Score=48.19  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.2

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      .+-++|++|+|||++|+.+.+.
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHC
Confidence            5678999999999999998753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.72  E-value=0.043  Score=47.43  Aligned_cols=23  Identities=17%  Similarity=0.202  Sum_probs=19.7

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHH
Q 036633          238 LGLFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      ...++++|+||||||++.+.+..
T Consensus        12 ~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          12 EMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTTC
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            35789999999999999988753

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.72  E-value=1.1  Score=39.65  Aligned_cols=86  Identities=10%  Similarity=0.079  Sum_probs=57.3

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccC---------------------C-----------CCCCceeEEecCCCCch
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDN---------------------N-----------DNDNHLIHFDMGNYTEL  283 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~---------------------~-----------~~~~~li~id~s~~~~~  283 (550)
                      +| -++.++|.+++|||+|+.+|-..+...                     |           .....+.-+|+..+.  
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~--   78 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA--   78 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG--
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCch--
Confidence            46 689999999999999999985443210                     0           112233334544432  


Q ss_pred             hhhhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          284 ESIKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       284 ~~~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                          .+++....+++..-..||++|=.+-..+.....+..+...|
T Consensus        79 ----df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~g  119 (204)
T d2c78a3          79 ----DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG  119 (204)
T ss_dssp             ----GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTT
T ss_pred             ----hhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence                34556667777777889999987777777766666666656

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=90.67  E-value=0.077  Score=45.63  Aligned_cols=24  Identities=17%  Similarity=0.245  Sum_probs=20.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      --++++|++|||||++.+.+...-
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~   28 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCC
Confidence            568899999999999999887543

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=90.54  E-value=0.06  Score=48.17  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.4

Q ss_pred             eEEEeccCCCcHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIAN  260 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~  260 (550)
                      .+-++|++|+|||++|+.+.+
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            466899999999999998874

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.35  E-value=0.072  Score=46.43  Aligned_cols=25  Identities=16%  Similarity=0.199  Sum_probs=20.9

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      --++++|.+|||||+|.+.+...-|
T Consensus         6 iKivviG~~~vGKTsli~~~~~~~f   30 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTNAF   30 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCC
Confidence            4689999999999999988876443

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.06  E-value=0.048  Score=47.11  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=17.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      -++++|++|||||+|...+...
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4788999999999998776543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.05  E-value=0.11  Score=45.85  Aligned_cols=35  Identities=11%  Similarity=0.137  Sum_probs=27.8

Q ss_pred             eEEEecc-CCCcHHHHHHHHHHHhccCCCCCCceeEEec
Q 036633          240 LFLFAGP-NCSGKAELAKAIANELYDNNDNDNHLIHFDM  277 (550)
Q Consensus       240 ~lLf~Gp-~GvGKT~lAk~la~~l~~~~~~~~~li~id~  277 (550)
                      .++++|- ||||||+++-.||..|..   .......+|.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~---~G~rVl~id~   38 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKA---AGYRTAGYKP   38 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHH---TTCCEEEECS
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHH---CCCeEEEECc
Confidence            5788898 599999999999999977   4445666663

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=0.076  Score=46.64  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=19.7

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -++++|++|||||+|...+...-|
T Consensus         5 KvvllG~~~vGKTSli~r~~~~~f   28 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTNKF   28 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCC
Confidence            478999999999999888765443

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.58  E-value=0.061  Score=46.32  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=19.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la  259 (550)
                      ..+.|+|+|++|||+|.++|.
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            689999999999999998874

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=89.47  E-value=0.18  Score=47.05  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=17.2

Q ss_pred             eeEEEeccCCCcHHH--HHHHHHHHh
Q 036633          239 GLFLFAGPNCSGKAE--LAKAIANEL  262 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~--lAk~la~~l  262 (550)
                      ...++.+|||+|||+  +..++...+
T Consensus        10 ~~~lv~~~TGsGKT~~~l~~~~~~~~   35 (305)
T d2bmfa2          10 RLTIMDLHPGAGKTKRYLPAIVREAI   35 (305)
T ss_dssp             CEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            578999999999995  334444443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=89.28  E-value=0.062  Score=46.60  Aligned_cols=20  Identities=25%  Similarity=0.247  Sum_probs=18.0

Q ss_pred             eEEEeccCCCcHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la  259 (550)
                      .+.|+|.||||||+|.++|.
T Consensus         3 ~VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999885

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.18  E-value=0.089  Score=46.06  Aligned_cols=19  Identities=32%  Similarity=0.480  Sum_probs=17.8

Q ss_pred             eEEEeccCCCcHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAI  258 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~l  258 (550)
                      -++++|.+|||||++...+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999998

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.15  E-value=1.5  Score=36.06  Aligned_cols=80  Identities=15%  Similarity=0.152  Sum_probs=43.5

Q ss_pred             EEEeccCCCcHHH-HHHHHHHHhccCCCCCCceeEEecCC---CCchhhhhhHHh-----------HHHHHHHhCCCCeE
Q 036633          241 FLFAGPNCSGKAE-LAKAIANELYDNNDNDNHLIHFDMGN---YTELESIKHFFD-----------SLAALVKKRPYSVV  305 (550)
Q Consensus       241 lLf~Gp~GvGKT~-lAk~la~~l~~~~~~~~~li~id~s~---~~~~~~~s~liG-----------~lt~al~~~p~~Vl  305 (550)
                      -+++||-.+|||+ |.+.+.++...    ....+.++-+.   |... .++.--+           ...+...  .+.+|
T Consensus         5 ~li~GpMfsGKTt~Li~~~~~~~~~----g~~v~~ikp~~D~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~I   77 (133)
T d1xbta1           5 QVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYAKDTRYSSS-FCTHDRNTMEALPACLLRDVAQEAL--GVAVI   77 (133)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHTT----TCCEEEEEETTCCC---------------CEEESSGGGGHHHHH--TCSEE
T ss_pred             EEEEecccCHHHHHHHHHHHHHHHc----CCcEEEEecccccCCcce-eeecCCCcceeeeeechhhhhhhhc--ccceE
Confidence            3678999999998 55666665544    23455544321   1111 0111111           1122222  35799


Q ss_pred             EeccccccCHHHHHHHHHhhhhc
Q 036633          306 LFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       306 llDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      ++||+.=++ ++.+....+.+.|
T Consensus        78 ~IDEaQFf~-dl~~~~~~~~~~~   99 (133)
T d1xbta1          78 GIDEGQFFP-DIVEFCEAMANAG   99 (133)
T ss_dssp             EESSGGGCT-THHHHHHHHHHTT
T ss_pred             EeehhHHHH-HHHHHHHHHHhcC
Confidence            999999886 5666666666666

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.04  E-value=0.058  Score=46.58  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=8.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      -++|+|.+|||||+|...+...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4689999999999999877643

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.02  E-value=0.073  Score=46.32  Aligned_cols=20  Identities=20%  Similarity=0.215  Sum_probs=17.7

Q ss_pred             eEEEeccCCCcHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIA  259 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la  259 (550)
                      .+.|+|+||||||+|..+|.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSE
T ss_pred             eEEEECCCCCCHHHHHHHHh
Confidence            47899999999999998874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.93  E-value=0.12  Score=44.78  Aligned_cols=27  Identities=22%  Similarity=0.135  Sum_probs=22.3

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -| --++++|++|||||+|...+...-|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f   30 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSY   30 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCC
Confidence            35 7899999999999999988765443

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=88.75  E-value=0.72  Score=42.82  Aligned_cols=83  Identities=12%  Similarity=0.144  Sum_probs=56.1

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccC---C-------------------CC-----------CCceeEEecCCCCchhhh
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDN---N-------------------DN-----------DNHLIHFDMGNYTELESI  286 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~---~-------------------~~-----------~~~li~id~s~~~~~~~~  286 (550)
                      ++.+.|+.|+|||+|+.+|.......   |                   .+           ...+--+|+..+      
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh------   77 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY------   77 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS------
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCch------
Confidence            78899999999999999996443220   0                   00           011222343333      


Q ss_pred             hhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          287 KHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       287 s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      ..++|....+++-....|+++|=.+-.-+.....+....+.|
T Consensus        78 ~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~  119 (267)
T d2dy1a2          78 GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLG  119 (267)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhcc
Confidence            234556677888888889999988888888877777777766

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.57  E-value=0.65  Score=43.34  Aligned_cols=25  Identities=24%  Similarity=0.256  Sum_probs=21.8

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      .-+++.|++|||||+++..++...-
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~~~   93 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINNVA   93 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999988753

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.41  E-value=1.3  Score=38.87  Aligned_cols=18  Identities=33%  Similarity=0.278  Sum_probs=14.6

Q ss_pred             eEEEeccCCCcHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAI  258 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~l  258 (550)
                      .++..+|||+|||. |-.+
T Consensus        40 dvi~~a~tGsGKTl-ay~l   57 (206)
T d1s2ma1          40 DILARAKNGTGKTA-AFVI   57 (206)
T ss_dssp             CEEEECCTTSCHHH-HHHH
T ss_pred             CEEEecCCcchhhh-hhcc
Confidence            68999999999995 4433

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.37  E-value=1.2  Score=39.35  Aligned_cols=22  Identities=18%  Similarity=-0.006  Sum_probs=17.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      .++...|||+|||..+-...-.
T Consensus        44 d~iv~a~TGsGKT~~~~l~~~~   65 (208)
T d1hv8a1          44 NIVAQARTGSGKTASFAIPLIE   65 (208)
T ss_dssp             EEEEECCSSSSHHHHHHHHHHH
T ss_pred             Ceeeechhcccccceeeccccc
Confidence            7889999999999977555433

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.02  E-value=0.12  Score=46.80  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=19.5

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHH
Q 036633          239 GLFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      .-++|+|++|||||++.+.+...
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999887544

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.41  E-value=0.053  Score=45.85  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=19.3

Q ss_pred             eEEEeccCCCcHHHHHHHHHHH
Q 036633          240 LFLFAGPNCSGKAELAKAIANE  261 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~  261 (550)
                      -+.|+|+||+|||+|.++|...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.00  E-value=0.16  Score=44.08  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=21.2

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      -++++|.+|||||++.+.+...-+.
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~   28 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGS   28 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            5799999999999999998766543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.28  E-value=0.17  Score=45.91  Aligned_cols=25  Identities=32%  Similarity=0.360  Sum_probs=22.0

Q ss_pred             C-eeEEEeccCCCcHHHHHHHHHHHh
Q 036633          238 L-GLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       238 p-~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      | .+.+++|.-|+|||++.+.+.+..
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhcC
Confidence            5 789999999999999998887753

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.26  E-value=0.21  Score=45.27  Aligned_cols=24  Identities=25%  Similarity=0.272  Sum_probs=19.2

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      ++++.+|||+|||+++-..+..+.
T Consensus        60 ~~~i~apTGsGKT~~~~~~~~~~~   83 (237)
T d1gkub1          60 SFAATAPTGVGKTSFGLAMSLFLA   83 (237)
T ss_dssp             CEECCCCBTSCSHHHHHHHHHHHH
T ss_pred             CEEEEecCCChHHHHHHHHHHHHH
Confidence            789999999999987766655443

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.90  E-value=0.22  Score=42.96  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=19.8

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELY  263 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~  263 (550)
                      -++|+|..|||||++.+.+-.--+
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~   27 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHE   27 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCC
Confidence            579999999999999988765433

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.46  E-value=0.28  Score=47.77  Aligned_cols=27  Identities=33%  Similarity=0.352  Sum_probs=22.4

Q ss_pred             CeeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          238 LGLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       238 p~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      |+.-+++||+|+|||++..||+=.|+.
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~lg~   51 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVLGV   51 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            356789999999999999999866543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=84.26  E-value=0.21  Score=48.22  Aligned_cols=26  Identities=15%  Similarity=0.161  Sum_probs=23.4

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|-|+-|+|||++++.|++.+..
T Consensus         7 ~rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEEECCccCCHHHHHHHHHHHhcc
Confidence            56789999999999999999999854

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.16  E-value=0.2  Score=46.90  Aligned_cols=26  Identities=31%  Similarity=0.414  Sum_probs=22.0

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      +.-+|+||.|+|||++..||+-.++.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~lg~   50 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWVFGE   50 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHTSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            46789999999999999999866543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=83.81  E-value=2.3  Score=37.08  Aligned_cols=92  Identities=11%  Similarity=0.026  Sum_probs=50.9

Q ss_pred             CC-eeEEEeccCCCcHHHHHHHHHHHhccCC------------CC-C-CceeEEecC-------CCCch----hhhhhHH
Q 036633          237 QL-GLFLFAGPNCSGKAELAKAIANELYDNN------------DN-D-NHLIHFDMG-------NYTEL----ESIKHFF  290 (550)
Q Consensus       237 ~p-~~lLf~Gp~GvGKT~lAk~la~~l~~~~------------~~-~-~~li~id~s-------~~~~~----~~~s~li  290 (550)
                      +| -++.++|-.+.|||+|+.+|...+...+            .. + ..=+.+|++       .+.-.    .-...++
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            46 7899999999999999999876432210            00 0 000222221       11000    0011222


Q ss_pred             hHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          291 DSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       291 G~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      +....+++.....|+++|=.+-.-+.....+..+..-|
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~  118 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG  118 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhc
Confidence            23333344455678999988877777666666666655

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=83.24  E-value=0.85  Score=40.78  Aligned_cols=26  Identities=15%  Similarity=-0.050  Sum_probs=21.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ...+|.=++|+|||..|-+++..+..
T Consensus        32 ~g~iLaDe~GlGKT~~~i~~~~~~~~   57 (230)
T d1z63a1          32 FGICLADDMGLGKTLQTIAVFSDAKK   57 (230)
T ss_dssp             CCEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCChHHHHHHhhhhhhh
Confidence            46788889999999999888777654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.17  E-value=1.5  Score=40.70  Aligned_cols=84  Identities=13%  Similarity=0.046  Sum_probs=54.3

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCC---CC------------------------------CCceeEEecCCCCchhh
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNN---DN------------------------------DNHLIHFDMGNYTELES  285 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~---~~------------------------------~~~li~id~s~~~~~~~  285 (550)
                      .++.++|..|+|||+|+.+|........   ..                              ...+.-+|+..+.    
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~----   82 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHV----   82 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSS----
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchh----
Confidence            5899999999999999999976654310   00                              0011112332221    


Q ss_pred             hhhHHhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          286 IKHFFDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       286 ~s~liG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                        .++|....+++-.-..||++|=.+-.-+.....+-+.-+.+
T Consensus        83 --dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~  123 (276)
T d2bv3a2          83 --DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYK  123 (276)
T ss_dssp             --SCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTT
T ss_pred             --hhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcC
Confidence              23335566777777789999988888887777776666555

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.14  E-value=0.51  Score=43.30  Aligned_cols=38  Identities=11%  Similarity=0.117  Sum_probs=31.6

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      .+.++|-=|||||++|-.||..|-.   ...+..-+|+.-.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~---~G~rVllID~D~q   40 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHA---MGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEEECTT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHh---CCCcEEEEecCCC
Confidence            4557899999999999999999877   5568888998754

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=82.98  E-value=0.23  Score=47.39  Aligned_cols=62  Identities=11%  Similarity=0.044  Sum_probs=37.1

Q ss_pred             EecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCc--ccCCCcccHHHHHHcchhhHHHHHhhh
Q 036633          391 VIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAA--RKYGQNGEGLKRWMDQRPSADHVIDKF  468 (550)
Q Consensus       391 ~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~--~~~GaN~R~L~~~i~~~~la~~~l~~~  468 (550)
                      +|-   |+....-..++...+.+       ++. .        -||...+|  ..+| .|+-+.=-.. +.+.++++.|.
T Consensus       186 PFl---~~~p~~ya~lL~~ki~~-------~~~-~--------~~LvNTGW~Gg~yg-~G~Ri~l~~T-R~ii~aIl~G~  244 (318)
T d1j3ba1         186 PFL---PMHPGVYARMLGEKIRK-------HAP-R--------VYLVNTGWTGGPYG-VGYRFPLPVT-RALLKAALSGA  244 (318)
T ss_dssp             GGC---SSCHHHHHHHHHHHHHH-------HCC-E--------EEEEECSEESSSTT-TSEECCHHHH-HHHHHHHHHTG
T ss_pred             ccc---ccChhhHHHHHHHHHHh-------cCC-c--------EEEEeccccccccc-cCCcCCchhh-HHHHHHHHcCc
Confidence            677   88887777777666643       333 2        26777777  3345 3332222222 47778888888


Q ss_pred             hcCCC
Q 036633          469 LRDAG  473 (550)
Q Consensus       469 ~~~~~  473 (550)
                      +...+
T Consensus       245 l~~~e  249 (318)
T d1j3ba1         245 LENVP  249 (318)
T ss_dssp             GGGSC
T ss_pred             ccccc
Confidence            76543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=82.87  E-value=0.27  Score=47.37  Aligned_cols=26  Identities=15%  Similarity=0.104  Sum_probs=23.1

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|-|+-|+|||++++.|++.+..
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            35789999999999999999998865

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.56  E-value=1.2  Score=35.99  Aligned_cols=39  Identities=8%  Similarity=0.089  Sum_probs=28.6

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecC
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMG  278 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s  278 (550)
                      -+++|.|-+|+||+++|++|...+...+ ..+++.-+|-.
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~~l~q~~-G~R~vtll~~~   45 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLSTFLQFG-GGRYYKIFEHN   45 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTTSC-SCCCEEECCCT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHhc-CCcceEEecCC
Confidence            6899999999999999999977763310 34566556543

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.31  E-value=0.66  Score=41.14  Aligned_cols=36  Identities=14%  Similarity=0.192  Sum_probs=28.6

Q ss_pred             EEeccCCCcHHHHHHHHHHHhccCCCCCCceeEEecCCC
Q 036633          242 LFAGPNCSGKAELAKAIANELYDNNDNDNHLIHFDMGNY  280 (550)
Q Consensus       242 Lf~Gp~GvGKT~lAk~la~~l~~~~~~~~~li~id~s~~  280 (550)
                      +..|-.|||||++|..||..+-.   ...+..-+|+.-.
T Consensus         6 v~s~KGGvGKTtia~nlA~~la~---~g~~VlliD~D~~   41 (232)
T d1hyqa_           6 VASGKGGTGKTTITANLGVALAQ---LGHDVTIVDADIT   41 (232)
T ss_dssp             EEESSSCSCHHHHHHHHHHHHHH---TTCCEEEEECCCS
T ss_pred             EECCCCCChHHHHHHHHHHHHHh---CCCCEEEEeCCCC
Confidence            34478899999999999999877   5567888887544

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.16  E-value=3.4  Score=39.43  Aligned_cols=39  Identities=18%  Similarity=0.175  Sum_probs=34.1

Q ss_pred             HhHHHHHHHhCCCCeEEeccccccCHHHHHHHHHhhhhc
Q 036633          290 FDSLAALVKKRPYSVVLFDKIEKANSSILNLLLKILKTD  328 (550)
Q Consensus       290 iG~lt~al~~~p~~VlllDEIeka~~~v~~~Ll~~ld~g  328 (550)
                      .+....+++-.-+.||++|=++-..+.....+-+..+.+
T Consensus       110 ~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~  148 (341)
T d1n0ua2         110 SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGER  148 (341)
T ss_dssp             CHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcC
Confidence            346677888888899999999999999999999998888

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=80.94  E-value=0.29  Score=47.14  Aligned_cols=26  Identities=15%  Similarity=0.121  Sum_probs=20.2

Q ss_pred             eeEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          239 GLFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       239 ~~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+.|-|+-|+|||++++.|++.+..
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC----
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhCC
Confidence            35789999999999999999988754

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=80.57  E-value=0.35  Score=45.94  Aligned_cols=62  Identities=13%  Similarity=0.033  Sum_probs=35.0

Q ss_pred             eEecCCCCCCHHHHHHHHHHHHHHHHHHhccCCCccccCCHHHHHHHHhcCcccCCCcccHHHHHHcchhhHHHHHhhhh
Q 036633          390 VVIDLAVPLLDTTRLLLREWACEETKRRNNDSKAVIVCPSTSALVHIASNAARKYGQNGEGLKRWMDQRPSADHVIDKFL  469 (550)
Q Consensus       390 i~f~~~~pL~~e~i~~I~~~~l~~~~~~l~~~~~~~l~~~~~a~~~L~~~~~~~~GaN~R~L~~~i~~~~la~~~l~~~~  469 (550)
                      -+|-   |+.......++...+.+       ++. +        -||...+|...|-  | +.--.. +.+.++++.|.+
T Consensus       184 ~PFl---~~~p~~ya~lL~~ki~~-------~~~-~--------v~LvNTGw~G~G~--R-i~l~~T-R~ii~ai~~G~l  240 (313)
T d2olra1         184 AAFL---SLHPTQYAEVLVKRMQA-------AGA-Q--------AYLVNTGWNGTGK--R-ISIKDT-RAIIDAILNGSL  240 (313)
T ss_dssp             GGGC---SSCHHHHHHHHHHHHHH-------HTC-E--------EEEEECSBCTTSS--B-CCHHHH-HHHHHHHHHTHH
T ss_pred             cccc---cccHHHHHHHHHHHHHh-------cCC-c--------EEEEeccccCCCC--c-CCHHHH-HHHHHHHHhccc
Confidence            4778   88888888777776643       333 2        2445556521132  2 222222 477778888887


Q ss_pred             cCCCc
Q 036633          470 RDAGY  474 (550)
Q Consensus       470 ~~~~~  474 (550)
                      .+.++
T Consensus       241 ~~~e~  245 (313)
T d2olra1         241 DNAET  245 (313)
T ss_dssp             HHSCE
T ss_pred             cccce
Confidence            65443

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.54  E-value=4.4  Score=34.05  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=16.0

Q ss_pred             eEEEeccCCCcHHHHHHHHHHHhcc
Q 036633          240 LFLFAGPNCSGKAELAKAIANELYD  264 (550)
Q Consensus       240 ~lLf~Gp~GvGKT~lAk~la~~l~~  264 (550)
                      ..+++| +|=|||+.|--+|=..-+
T Consensus         5 i~vytG-~GKGKTTAAlG~alRA~G   28 (157)
T d1g5ta_           5 IIVFTG-NGKGKTTAAFGTAARAVG   28 (157)
T ss_dssp             EEEEES-SSSCHHHHHHHHHHHHHH
T ss_pred             EEEEeC-CCCCcHHHHHHHHHHHhc
Confidence            455565 599999988666544434

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=80.46  E-value=0.31  Score=51.67  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHh
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ++-++++.|.||+|||+.++.|-++|
T Consensus        85 ~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          85 ENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999887665

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=80.15  E-value=0.33  Score=51.75  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=22.8

Q ss_pred             CCeeEEEeccCCCcHHHHHHHHHHHh
Q 036633          237 QLGLFLFAGPNCSGKAELAKAIANEL  262 (550)
Q Consensus       237 ~p~~lLf~Gp~GvGKT~lAk~la~~l  262 (550)
                      ++-++++.|.||+|||+.++.+-+++
T Consensus       124 ~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         124 QNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            44799999999999999999887766