Citrus Sinensis ID: 036661

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-----
Protein Sequence
MAASSLPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED
Secondary Structure (PSIPRED)
cccccccHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHccccccccEEEHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHcHHHccccccccHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccEEEEccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHcHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEEccEEEEEEEcc
Coil and Loop (DISEMBL)
maasslpprlnkiyRSSTINQWNSQIREAVDKNEAHKALLLFRRMkkndiepnnltfPFIAKACAKLSDFLYSQMihghivkspfwsdiFVQTTMVDMYAKCDRLDCAYKLfdkmpdrdvaSWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSiiggctygdkfddslNFYRHmiydgfrpdVTTVVSLLSScvcpealvqgRLVHshgihygfdLDVSVINTLISMYskcgdidsaRFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMIsgcgqsgalelgkwfdnyacsgglkdnVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAgflekgwgYFNLMTKVyqvnpelnhYSCMADLLGRKGKLKEALDFvqsmpiksdagiWGTLLCACKIHRNIEIGEYVAYRLfelephsaapyvEMANIYALGGRWDGVANLRTMMKrnqvkkfpgqslvhingktctftved
Flexible Loop (DISEMBL)
maasslpprlnkiyrsstinqwnsqiREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNqvkkfpgqslvhingktctftved
Low Complexity Region (SEG)
MAASSLPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDvttvvsllsscvcPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED
Disordered region (IsUnstruct)
*****************TINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFT***
Disordered Region (DISOPRED)
***SSLPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED
Disordered Region (DISEMBL)
********RLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED
Disordered Region (DISPRO)
MAASSLPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASSLPPRLNKIYRSSTxxxxxxxxxxxxxxxxxxxxxLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	615	2.2.26 [Sep-21-2011]
P0C8Q2	654	Pentatricopeptide repeat-	yes	no	0.982	0.923	0.586	0.0
Q3E6Q1	809	Pentatricopeptide repeat-	no	no	0.931	0.708	0.366	1e-116
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.962	0.679	0.349	1e-110
Q9LFL5	850	Pentatricopeptide repeat-	no	no	0.978	0.708	0.340	1e-105
Q9SS97	660	Putative pentatricopeptid	no	no	0.969	0.903	0.333	1e-105
Q9LTV8	694	Pentatricopeptide repeat-	no	no	0.879	0.779	0.352	1e-103
Q9SVP7	1064	Pentatricopeptide repeat-	no	no	0.941	0.544	0.342	1e-102
O04659	691	Pentatricopeptide repeat-	no	no	0.970	0.863	0.351	1e-101
Q9SIT7	697	Pentatricopeptide repeat-	no	no	0.882	0.779	0.333	1e-100
Q9SMZ2	990	Pentatricopeptide repeat-	no	no	0.959	0.595	0.340	1e-100

>sp|P0C8Q2|PP323_ARATH Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/607 (58%), Positives = 450/607 (74%), Gaps = 3/607 (0%)

Query: 9   RLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLS 68
           RL +I   S++N WN QIREAV++N+  ++LLLFR MK+   EPNN TFPF+AKACA+L+
Sbjct: 7   RLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLA 66

Query: 69  DFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIV 128
           D    +M+H H++KSPFWSD+FV T  VDM+ KC+ +D A K+F++MP+RD  +WNAM+ 
Sbjct: 67  DVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLS 126

Query: 129 GFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA 188
           GF Q G  +K   LF  MRL  I  D VTVM L Q+A   K L LL+++H+ GI +GVD 
Sbjct: 127 GFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDV 186

Query: 189 DVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGG-CTYGDKFDDSLNFYR 247
            V+V NTWIS Y KC DL  A+LVF  I+ G RTVVSWNS+      +G+ F D+   Y 
Sbjct: 187 QVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAF-DAFGLYC 245

Query: 248 HMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCG 307
            M+ + F+PD++T ++L +SC  PE L QGRL+HSH IH G D D+  INT ISMYSK  
Sbjct: 246 LMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSE 305

Query: 308 DIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMIS 367
           D  SAR LFD M  RT VSWT MISGYA+KGD+DEAL LF AM  +GE PDLVT+LS+IS
Sbjct: 306 DTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLIS 365

Query: 368 GCGQSGALELGKWFDNYA-CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV 426
           GCG+ G+LE GKW D  A   G  +DNVM+CNALIDMYSKCGSI +AR++F   PEKTVV
Sbjct: 366 GCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVV 425

Query: 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLM 486
           +WTTMIAG ALNG F+EAL LF +M++LD +PN +TFLAVLQAC H+G LEKGW YF++M
Sbjct: 426 TWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIM 485

Query: 487 TKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEI 546
            +VY ++P L+HYSCM DLLGRKGKL+EAL+ +++M  K DAGIWG LL ACKIHRN++I
Sbjct: 486 KQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKI 545

Query: 547 GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHING 606
            E  A  LF LEP  AAPYVEMANIYA  G WDG A +R++MK+  +KK+PG+S++ +NG
Sbjct: 546 AEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNG 605

Query: 607 KTCTFTV 613
           K  +FTV
Sbjct: 606 KNHSFTV 612

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/575 (36%), Positives = 327/575 (56%), Gaps = 2/575 (0%)

Query: 37  KALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMV 96
           KAL  F RM+ +D+EP    F ++ K C   ++    + IHG +VKS F  D+F  T + 
Sbjct: 118 KALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLE 177

Query: 97  DMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFV 156
           +MYAKC +++ A K+FD+MP+RD+ SWN ++ G++Q G     L +  +M    ++  F+
Sbjct: 178 NMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFI 237

Query: 157 TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGI 216
           T++ +  A    + +S+ K +H + +  G D+ V++    +  YAKC  L+ A  +F G+
Sbjct: 238 TIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM 297

Query: 217 EEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQ 276
            E  R VVSWNS+I      +   +++  ++ M+ +G +P   +V+  L +C     L +
Sbjct: 298 LE--RNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLER 355

Query: 277 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQ 336
           GR +H   +  G D +VSV+N+LISMY KC ++D+A  +F  +  RT VSW AMI G+AQ
Sbjct: 356 GRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQ 415

Query: 337 KGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV 396
            G   +AL  F  M +    PD  T +S+I+   +       KW         L  NV V
Sbjct: 416 NGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFV 475

Query: 397 CNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDL 456
             AL+DMY+KCG+I  AR +F  + E+ V +W  MI G   +G    AL+LF +M +  +
Sbjct: 476 TTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTI 535

Query: 457 RPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL 516
           +PN VTFL+V+ AC+H+G +E G   F +M + Y +   ++HY  M DLLGR G+L EA 
Sbjct: 536 KPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAW 595

Query: 517 DFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG 576
           DF+  MP+K    ++G +L AC+IH+N+   E  A RLFEL P     +V +ANIY    
Sbjct: 596 DFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAAS 655

Query: 577 RWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTF 611
            W+ V  +R  M R  ++K PG S+V I  +  +F
Sbjct: 656 MWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSF 690

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  400 bits (1029), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/595 (34%), Positives = 334/595 (56%), Gaps = 3/595 (0%)

Query: 22  WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIV 81
           WN  + E     +   ++ LF++M  + +E ++ TF  ++K+ + L      + +HG I+
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222

Query: 82  KSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLC 141
           KS F     V  ++V  Y K  R+D A K+FD+M +RDV SWN++I G+   G  EK L 
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282

Query: 142 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYA 201
           +F  M + GI+ D  T++ +      ++ +SL ++VHS G+      +   CNT +  Y+
Sbjct: 283 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYS 342

Query: 202 KCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTV 261
           KC DL  A+ VFR + +  R+VVS+ S+I G        +++  +  M  +G  PDV TV
Sbjct: 343 KCGDLDSAKAVFREMSD--RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400

Query: 262 VSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD 321
            ++L+ C     L +G+ VH          D+ V N L+ MY+KCG +  A  +F  M  
Sbjct: 401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460

Query: 322 RTRVSWTAMISGYAQKGDLDEALRLF-FAMEAAGEVPDLVTVLSMISGCGQSGALELGKW 380
           +  +SW  +I GY++    +EAL LF   +E     PD  TV  ++  C    A + G+ 
Sbjct: 461 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 520

Query: 381 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGE 440
              Y    G   +  V N+L+DMY+KCG++  A  LF  +  K +VSWT MIAG  ++G 
Sbjct: 521 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580

Query: 441 FVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYS 500
             EA+ LF+QM +  +  + ++F+++L AC+H+G +++GW +FN+M    ++ P + HY+
Sbjct: 581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640

Query: 501 CMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560
           C+ D+L R G L +A  F+++MPI  DA IWG LLC C+IH ++++ E VA ++FELEP 
Sbjct: 641 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 700

Query: 561 SAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED 615
           +   YV MANIYA   +W+ V  LR  + +  ++K PG S + I G+   F   D
Sbjct: 701 NTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1

 Score =  382 bits (981), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/658 (34%), Positives = 339/658 (51%), Gaps = 56/658 (8%)

Query: 6   LPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACA 65
            PP    +Y       WNS IR   D   A+K L LF  M      P+N TFPF+ KAC 
Sbjct: 85  FPPSDAGVY------HWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACG 138

Query: 66  KLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNA 125
           ++S     +  H   + + F S++FV   +V MY++C  L  A K+FD+M   DV SWN+
Sbjct: 139 EISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNS 198

Query: 126 MIVGFAQMGFLEKVLCLFYNM-RLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHI 184
           +I  +A++G  +  L +F  M    G + D +T++ +          SL K +H F +  
Sbjct: 199 IIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTS 258

Query: 185 GVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLN 244
            +  ++ V N  +  YAKC  +  A  VF  +   ++ VVSWN+++ G +   +F+D++ 
Sbjct: 259 EMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMS--VKDVVSWNAMVAGYSQIGRFEDAVR 316

Query: 245 FY-----------------------------------RHMIYDGFRPDVTTVVSLLSSCV 269
            +                                   R M+  G +P+  T++S+LS C 
Sbjct: 317 LFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCA 376

Query: 270 CPEALVQGRLVHSHGIHYGFDL-------DVSVINTLISMYSKCGDIDSARFLFDGMCDR 322
              AL+ G+ +H + I Y  DL       +  VIN LI MY+KC  +D+AR +FD +  +
Sbjct: 377 SVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPK 436

Query: 323 TR--VSWTAMISGYAQKGDLDEALRLFFAM--EAAGEVPDLVTVLSMISGCGQSGALELG 378
            R  V+WT MI GY+Q GD ++AL L   M  E     P+  T+   +  C    AL +G
Sbjct: 437 ERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIG 496

Query: 379 KWFDNYACSGGLKD-NVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCAL 437
           K    YA         + V N LIDMY+KCGSI DAR +F  +  K  V+WT+++ G  +
Sbjct: 497 KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGM 556

Query: 438 NGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN 497
           +G   EAL +F +M  +  + + VT L VL AC+H+G +++G  YFN M  V+ V+P   
Sbjct: 557 HGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPE 616

Query: 498 HYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFEL 557
           HY+C+ DLLGR G+L  AL  ++ MP++    +W   L  C+IH  +E+GEY A ++ EL
Sbjct: 617 HYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITEL 676

Query: 558 EPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED 615
             +    Y  ++N+YA  GRW  V  +R++M+   VKK PG S V     T TF V D
Sbjct: 677 ASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGD 734

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/602 (33%), Positives = 333/602 (55%), Gaps = 6/602 (0%)

Query: 18  TINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIH 77
           ++ QWN+ ++    + +  + L  F  M +++ +P+N T P   KAC +L +  Y +MIH
Sbjct: 24  SLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYGEMIH 83

Query: 78  GHIVKS-PFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFL 136
           G + K     SD++V ++++ MY KC R+  A ++FD++   D+ +W++M+ GF + G  
Sbjct: 84  GFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNGSP 143

Query: 137 EKVLCLFYNMRLVG-IQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNT 195
            + +  F  M +   +  D VT++ L  A     +  L + VH F I  G   D+S+ N+
Sbjct: 144 YQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNS 203

Query: 196 WISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFR 255
            ++ YAK    K A  +F+ I E  + V+SW+++I          ++L  +  M+ DG  
Sbjct: 204 LLNCYAKSRAFKEAVNLFKMIAE--KDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTE 261

Query: 256 PDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFL 315
           P+V TV+ +L +C     L QGR  H   I  G + +V V   L+ MY KC   + A  +
Sbjct: 262 PNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAV 321

Query: 316 FDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEV-PDLVTVLSMISGCGQSGA 374
           F  +  +  VSW A+ISG+   G    ++  F  M       PD + ++ ++  C + G 
Sbjct: 322 FSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGF 381

Query: 375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAG 434
           LE  K F +Y    G   N  +  +L+++YS+CGS+G+A ++F  +  K  V WT++I G
Sbjct: 382 LEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITG 441

Query: 435 CALNGEFVEALDLFHQMMEL-DLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVN 493
             ++G+  +AL+ F+ M++  +++PN VTFL++L AC+HAG + +G   F LM   Y++ 
Sbjct: 442 YGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLA 501

Query: 494 PELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYR 553
           P L HY+ + DLLGR G L  A++  + MP      I GTLL AC+IH+N E+ E VA +
Sbjct: 502 PNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKK 561

Query: 554 LFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTV 613
           LFELE + A  Y+ M+N+Y + G W+ V  LR  +K+  +KK   +SL+ I  K   F  
Sbjct: 562 LFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVA 621

Query: 614 ED 615
           +D
Sbjct: 622 DD 623

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/542 (35%), Positives = 303/542 (55%), Gaps = 1/542 (0%)

Query: 74  QMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQM 133
           + IH  ++        F+ T ++   +    +  A ++FD +P   +  WNA+I G+++ 
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 134 GFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVC 193
              +  L ++ NM+L  +  D  T   L +A     HL + + VH+    +G DADV V 
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 194 NTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDG 253
           N  I+ YAKC  L  A  VF G+    RT+VSW +I+       +  ++L  +  M    
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217

Query: 254 FRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSAR 313
            +PD   +VS+L++  C + L QGR +H+  +  G +++  ++ +L +MY+KCG + +A+
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277

Query: 314 FLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSG 373
            LFD M     + W AMISGYA+ G   EA+ +F  M      PD +++ S IS C Q G
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337

Query: 374 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIA 433
           +LE  +    Y      +D+V + +ALIDM++KCGS+  AR +F    ++ VV W+ MI 
Sbjct: 338 SLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIV 397

Query: 434 GCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVN 493
           G  L+G   EA+ L+  M    + PN VTFL +L AC H+G + +GW +FN M   +++N
Sbjct: 398 GYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMAD-HKIN 456

Query: 494 PELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYR 553
           P+  HY+C+ DLLGR G L +A + ++ MP++    +WG LL ACK HR++E+GEY A +
Sbjct: 457 PQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQ 516

Query: 554 LFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTV 613
           LF ++P +   YV+++N+YA    WD VA +R  MK   + K  G S V + G+   F V
Sbjct: 517 LFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRV 576

Query: 614 ED 615
            D
Sbjct: 577 GD 578

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/581 (34%), Positives = 307/581 (52%), Gaps = 2/581 (0%)

Query: 35  AHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTT 94
             KA+ LF+RM  + +EP++ T   +  AC+        Q +H +  K  F S+  ++  
Sbjct: 370 GEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGA 429

Query: 95  MVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQAD 154
           ++++YAKC  ++ A   F +    +V  WN M+V +  +  L     +F  M++  I  +
Sbjct: 430 LLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPN 489

Query: 155 FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFR 214
             T   + +  I    L L + +HS  I      +  VC+  I  YAK   L  A  +  
Sbjct: 490 QYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL- 548

Query: 215 GIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEAL 274
            I    + VVSW ++I G T  +  D +L  +R M+  G R D   + + +S+C   +AL
Sbjct: 549 -IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQAL 607

Query: 275 VQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGY 334
            +G+ +H+     GF  D+   N L+++YS+CG I+ +   F+       ++W A++SG+
Sbjct: 608 KEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGF 667

Query: 335 AQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNV 394
            Q G+ +EALR+F  M   G   +  T  S +    ++  ++ GK         G     
Sbjct: 668 QQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSET 727

Query: 395 MVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL 454
            VCNALI MY+KCGSI DA + F  +  K  VSW  +I   + +G   EALD F QM+  
Sbjct: 728 EVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHS 787

Query: 455 DLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE 514
           ++RPN VT + VL AC+H G ++KG  YF  M   Y ++P+  HY C+ D+L R G L  
Sbjct: 788 NVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSR 847

Query: 515 ALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL 574
           A +F+Q MPIK DA +W TLL AC +H+N+EIGE+ A+ L ELEP  +A YV ++N+YA+
Sbjct: 848 AKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAV 907

Query: 575 GGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED 615
             +WD     R  MK   VKK PGQS + +     +F V D
Sbjct: 908 SKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGD 948

Arabidopsis thaliana (taxid: 3702)

>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/601 (35%), Positives = 324/601 (53%), Gaps = 4/601 (0%)

Query: 17  STINQWNSQIREAVDKNEAHKALLLFRRMKKNDI-EPNNLTFPFIAKACAKLSDFLYSQM 75
           S +  WNS +      +  H  L +F+R+    I  P++ TFP + KA   L      +M
Sbjct: 69  SDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRM 128

Query: 76  IHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGF 135
           IH  +VKS +  D+ V +++V MYAK +  + + ++FD+MP+RDVASWN +I  F Q G 
Sbjct: 129 IHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGE 188

Query: 136 LEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNT 195
            EK L LF  M   G + + V++     A      L   K +H   +  G + D  V + 
Sbjct: 189 AEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSA 248

Query: 196 WISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFR 255
            +  Y KC+ L++A  VF+ +    +++V+WNS+I G          +     MI +G R
Sbjct: 249 LVDMYGKCDCLEVAREVFQKMPR--KSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTR 306

Query: 256 PDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFL 315
           P  TT+ S+L +C     L+ G+ +H + I    + D+ V  +LI +Y KCG+ + A  +
Sbjct: 307 PSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETV 366

Query: 316 FDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGAL 375
           F         SW  MIS Y   G+  +A+ ++  M + G  PD+VT  S++  C Q  AL
Sbjct: 367 FSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAAL 426

Query: 376 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGC 435
           E GK          L+ + ++ +AL+DMYSKCG+  +A  +F ++P+K VVSWT MI+  
Sbjct: 427 EKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAY 486

Query: 436 ALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE 495
             +G+  EAL  F +M +  L+P+ VT LAVL AC HAG +++G  +F+ M   Y + P 
Sbjct: 487 GSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPI 546

Query: 496 LNHYSCMADLLGRKGKLKEALDFVQSMPIKSD-AGIWGTLLCACKIHRNIEIGEYVAYRL 554
           + HYSCM D+LGR G+L EA + +Q  P  SD A +  TL  AC +H    +G+ +A  L
Sbjct: 547 IEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLL 606

Query: 555 FELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVE 614
            E  P  A+ Y+ + N+YA G  WD    +R  MK   ++K PG S + ++ K C F  E
Sbjct: 607 VENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFFAE 666

Query: 615 D 615
           D
Sbjct: 667 D 667

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1

 Score =  367 bits (943), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/614 (33%), Positives = 319/614 (51%), Gaps = 71/614 (11%)

Query: 71  LYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGF 130
           +Y + +H  ++KS F ++IF+Q  ++D Y+KC  L+   ++FDKMP R++ +WN+++ G 
Sbjct: 37  IYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGL 96

Query: 131 AQMGFL-------------------------------EKVLCLFYNMRLVGIQADFVTVM 159
            ++GFL                               E+ LC F  M   G   +  +  
Sbjct: 97  TKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFA 156

Query: 160 GLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG 219
            +  A      ++    VHS        +DV + +  +  Y+KC ++  A+ VF   E G
Sbjct: 157 SVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFD--EMG 214

Query: 220 LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRL 279
            R VVSWNS+I          ++L+ ++ M+     PD  T+ S++S+C    A+  G+ 
Sbjct: 215 DRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQE 274

Query: 280 VHSHGI-HYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM------------------- 319
           VH   + +     D+ + N  + MY+KC  I  ARF+FD M                   
Sbjct: 275 VHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAA 334

Query: 320 ------------CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMIS 367
                        +R  VSW A+I+GY Q G+ +EAL LF  ++     P   +  +++ 
Sbjct: 335 STKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILK 394

Query: 368 GCGQSGALELGKWFDNYACSGGLK------DNVMVCNALIDMYSKCGSIGDARELFYALP 421
            C     L LG     +    G K      D++ V N+LIDMY KCG + +   +F  + 
Sbjct: 395 ACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMM 454

Query: 422 EKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWG 481
           E+  VSW  MI G A NG   EAL+LF +M+E   +P+ +T + VL AC HAGF+E+G  
Sbjct: 455 ERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRH 514

Query: 482 YFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIH 541
           YF+ MT+ + V P  +HY+CM DLLGR G L+EA   ++ MP++ D+ IWG+LL ACK+H
Sbjct: 515 YFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVH 574

Query: 542 RNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSL 601
           RNI +G+YVA +L E+EP ++ PYV ++N+YA  G+W+ V N+R  M++  V K PG S 
Sbjct: 575 RNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSW 634

Query: 602 VHINGKTCTFTVED 615
           + I G    F V+D
Sbjct: 635 IKIQGHDHVFMVKD 648

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1

 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/594 (34%), Positives = 325/594 (54%), Gaps = 4/594 (0%)

Query: 23  NSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVK 82
           N  + E +   +    L  F  M ++D+E + +TF  +     K+      Q +H   +K
Sbjct: 284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343

Query: 83  SPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCL 142
                 + V  ++++MY K  +   A  +FD M +RD+ SWN++I G AQ G   + +CL
Sbjct: 344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403

Query: 143 FYNMRLVGIQADFVTVMGLTQAAIH-AKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYA 201
           F  +   G++ D  T+  + +AA    + LSL K VH   I I   +D  V    I AY+
Sbjct: 404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYS 463

Query: 202 KCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTV 261
           +   +K AE++F   E     +V+WN+++ G T       +L  +  M   G R D  T+
Sbjct: 464 RNRCMKEAEILF---ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTL 520

Query: 262 VSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD 321
            ++  +C    A+ QG+ VH++ I  G+DLD+ V + ++ MY KCGD+ +A+F FD +  
Sbjct: 521 ATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV 580

Query: 322 RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWF 381
              V+WT MISG  + G+ + A  +F  M   G +PD  T+ ++        ALE G+  
Sbjct: 581 PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQI 640

Query: 382 DNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEF 441
              A      ++  V  +L+DMY+KCGSI DA  LF  +    + +W  M+ G A +GE 
Sbjct: 641 HANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEG 700

Query: 442 VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSC 501
            E L LF QM  L ++P++VTF+ VL AC+H+G + + + +   M   Y + PE+ HYSC
Sbjct: 701 KETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSC 760

Query: 502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561
           +AD LGR G +K+A + ++SM +++ A ++ TLL AC++  + E G+ VA +L ELEP  
Sbjct: 761 LADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLD 820

Query: 562 AAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED 615
           ++ YV ++N+YA   +WD +   RTMMK ++VKK PG S + +  K   F V+D
Sbjct: 821 SSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDD 874

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	615
225438593	637	PREDICTED: pentatricopeptide repeat-cont	1.0	0.965	0.643	0.0
147769567	609	hypothetical protein VITISV_020733 [Viti	0.988	0.998	0.627	0.0
449451649	651	PREDICTED: pentatricopeptide repeat-cont	0.995	0.940	0.606	0.0
297804224	1251	putative protein [Arabidopsis lyrata sub	0.969	0.476	0.597	0.0
2828294	1260	putatative protein [Arabidopsis thaliana	0.982	0.479	0.586	0.0
356528513	651	PREDICTED: pentatricopeptide repeat-cont	0.980	0.926	0.590	0.0
186512044	654	pentatricopeptide repeat-containing prot	0.982	0.923	0.586	0.0
255582516	468	pentatricopeptide repeat-containing prot	0.691	0.908	0.647	1e-168
148909481	795	unknown [Picea sitchensis]	0.962	0.744	0.405	1e-132
449523792	821	PREDICTED: pentatricopeptide repeat-cont	0.956	0.716	0.371	1e-121

>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Vitis vinifera] gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/615 (64%), Positives = 495/615 (80%)

Query: 1   MAASSLPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFI 60
           M   +     N+     T+ QWNS I E+V++  AHKALLLFR+MK+N +EPNNLTFP +
Sbjct: 1   MVTPAATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSV 60

Query: 61  AKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDV 120
           AKAC+KL +  YSQ++H H+VKS F +D+FVQT++VDMY KC +L  AY LF +MP RDV
Sbjct: 61  AKACSKLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDV 120

Query: 121 ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSF 180
           ASWN+MI+GFAQ+GF+++V+ LF  M + GI+AD VTV+GLT +A+  K L +L+S+HSF
Sbjct: 121 ASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSF 180

Query: 181 GIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFD 240
           GI IG+D DVSV NTWI+AYAKC +  +AE VF GI++GL+T VSWNS+I G  + ++  
Sbjct: 181 GIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCS 240

Query: 241 DSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLI 300
            ++ F++ M+  GFR D++T++SLLSSCV PE L  G+L+H+HGI  G D D+ VINTLI
Sbjct: 241 KAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLI 300

Query: 301 SMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV 360
           SMYSKCGDI SAR+LFD M  +TRVSWTAMI+GYA+KGDLDEA+ LF AMEA GE PDLV
Sbjct: 301 SMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLV 360

Query: 361 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL 420
           T++S++SGCGQ+GALELGKW D YA + GLKDN+MVCNALID+Y+KCGS+ +ARELFY +
Sbjct: 361 TIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTM 420

Query: 421 PEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGW 480
           PEK++VSWTT+IAGCALNGEF EAL LF QM+EL L+PN +TFLAVLQAC HAGFLEKGW
Sbjct: 421 PEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGW 480

Query: 481 GYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKI 540
             FNLMTKVY++NP L+HYSCMADLLGRKG+LKEA +F+Q+MP K D GIW  LL ACKI
Sbjct: 481 ECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKI 540

Query: 541 HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQS 600
           H+N+ IGE VAY LFELEP +A PYV+MANIYA  G+WD VA +RTMMK N+  K PG+S
Sbjct: 541 HQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMKSPGKS 600

Query: 601 LVHINGKTCTFTVED 615
           LV +NGKT  FTVED
Sbjct: 601 LVQVNGKTHEFTVED 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/615 (62%), Positives = 484/615 (78%), Gaps = 7/615 (1%)

Query: 1   MAASSLPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFI 60
           M   +     N+     T+ QWNS I E+V++  AHKALLLFR+MK+N +EPNNLTFP +
Sbjct: 1   MVTPAATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSV 60

Query: 61  AKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDV 120
           AKAC+KL +  YSQ++H H+VKS F +D+FVQT++VDMY KC +L  AY LF +MP RDV
Sbjct: 61  AKACSKLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDV 120

Query: 121 ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSF 180
           ASWN+MI GFAQ+GF+++V+ LF  M + GI+AD VTV+GLT +A+  K L +L+S+HSF
Sbjct: 121 ASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSF 180

Query: 181 GIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFD 240
           GI IG+D DVSV NTWI+AYAKC +  +AE VF GI++GL+T VSWNS+I G  + ++  
Sbjct: 181 GIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCS 240

Query: 241 DSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLI 300
            ++ F++ M+  GFR D++T++SLLSSCV PE L  G+L+H+HGI  G D D+ VINTLI
Sbjct: 241 KAVGFFKKMLXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLI 300

Query: 301 SMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV 360
           SMYSKCGDI SAR+LFD M  +TRVSWTAMI+G A+KGDLDEA+ LF AMEA GE PDLV
Sbjct: 301 SMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLV 360

Query: 361 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL 420
           T++S++SGCGQ+GALELGKW D YA + GLKDN+MVCNALID+Y+KCGS+ +ARELFY +
Sbjct: 361 TIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTM 420

Query: 421 PEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGW 480
           PEK++VSWTT+IAGCALNGEF EAL LF QM+EL L+PN +TFLAVLQAC HAGFLEKGW
Sbjct: 421 PEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGW 480

Query: 481 GYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKI 540
             FNLMTKVY++NP L+HYSCMADLLGRKG+LKEA +F+Q+MP K D GIW  LL ACKI
Sbjct: 481 ECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWSVLLSACKI 540

Query: 541 HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQS 600
           H+N+ IGE VAY LFELEP +A PYV+MANIYA  G+WD VA +RTMMK N+  K  G+ 
Sbjct: 541 HQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNKAMKSSGE- 599

Query: 601 LVHINGKTCTFTVED 615
                 K C+   ED
Sbjct: 600 ------KPCSSKWED 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like [Cucumis sativus] gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like [Cucumis sativus]

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/612 (60%), Positives = 466/612 (76%)

Query: 4   SSLPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKA 63
           S+L   LN   + ST+  WNS IR AV++  A KAL LF ++K N ++PNN TFPF++KA
Sbjct: 2   STLTQHLNCFSKLSTLTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKA 61

Query: 64  CAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASW 123
           CAKLS    SQ+IH H+VKSPF+SDI+VQT MVDMY KC ++D AY LFDKMP R++ASW
Sbjct: 62  CAKLSHLTNSQIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASW 121

Query: 124 NAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIH 183
           NAMI+GF+Q+G L++V  LF  MRLVG + D  TV+GLT+A I AK L  LK+VH+ GI 
Sbjct: 122 NAMIIGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIE 181

Query: 184 IGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSL 243
            G+DAD SV NTWI+AY+KC +L++A++VF GI++  R+ VSWNS+I    +  K+ D++
Sbjct: 182 TGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAV 241

Query: 244 NFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMY 303
             Y+ ++ DGF+PD +T++SLLSSC  PEAL+ G L+H HG   G D D+S+INTLISMY
Sbjct: 242 KSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMY 301

Query: 304 SKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVL 363
           S+CGDI SA  LFDGM  RT VSWTAMISGY++ G +D+AL LF AME  GE PD+VTVL
Sbjct: 302 SRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVL 361

Query: 364 SMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK 423
           S+ISGCG++GAL LG W DNYA    LK +V+VCNALIDMY+KCGS+ DARE+FY+LP +
Sbjct: 362 SLISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNR 421

Query: 424 TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYF 483
           TVVSWT MIA CALNGEF EALDLF  + E  + PN +TFLAVLQAC H G+LEKG   F
Sbjct: 422 TVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGRECF 481

Query: 484 NLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRN 543
            +MT+ Y +NP L+HYSCM DLLGRKGKL EAL+ +Q MP+K D GIWG LL ACKIH N
Sbjct: 482 MMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIHNN 541

Query: 544 IEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVH 603
           +EIGEYV+  LFEL+P  A  +VEMANIYA  GRWD VA +R  M+ NQ++K PG+S+V 
Sbjct: 542 MEIGEYVSRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQMRKSPGKSVVQ 601

Query: 604 INGKTCTFTVED 615
           +NG +  F VED
Sbjct: 602 VNGMSHVFFVED 613

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata] gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/599 (59%), Positives = 444/599 (74%), Gaps = 3/599 (0%)

Query: 17   STINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMI 76
            S++N WN Q+REAV++N+  ++LLLFR MK+   EPNN TFPF+AKACA+L+   Y +M+
Sbjct: 611  SSVNAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMV 670

Query: 77   HGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFL 136
            H H++KSPFWSD+FV T  VDM+ KCD LD A K+F++MP RD  +WNAM+ GF Q G  
Sbjct: 671  HTHLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHT 730

Query: 137  EKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTW 196
            +KV  LF  MRL  I  D VTVM L Q+A   K L LLK +H+FGI +GVD   +V NTW
Sbjct: 731  DKVFSLFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTW 790

Query: 197  ISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGG-CTYGDKFDDSLNFYRHMIYDGFR 255
            ISAY KC DL  A+LVF  I+ G RTVVSWNS+      +G+ F D+   YR M+ D F+
Sbjct: 791  ISAYGKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAF-DAFGHYRLMLRDEFK 849

Query: 256  PDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFL 315
            PD++T ++L +SC  P+ L QGRL+HSH IH G D D+  INT ISMYSK GD  SAR L
Sbjct: 850  PDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSARLL 909

Query: 316  FDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGAL 375
            FD M  RT VSWT MISGYA+KGD+DEAL LF AM   G  PDLVT+LS+ISGCG+ G+L
Sbjct: 910  FDIMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFGSL 969

Query: 376  ELGKWFDNYA-CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAG 434
            E+GKW D  A   G  KDNVMVCNALIDMYSKCGSI +AR++F    EKT+V+WTTMIAG
Sbjct: 970  EIGKWIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIFDNTSEKTMVTWTTMIAG 1029

Query: 435  CALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP 494
             ALNG F+EA++LF +M++LD +PN +TFLAVLQAC H+G LEKGW YF++M +VY ++P
Sbjct: 1030 YALNGIFLEAMELFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISP 1089

Query: 495  ELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRL 554
             L+HYSCM DLLGRKGKL EAL+ + +M  K DAGIWG LL ACKIHRN++I E  A  L
Sbjct: 1090 GLDHYSCMVDLLGRKGKLDEALELIHNMSAKPDAGIWGALLSACKIHRNVKIAEQAADSL 1149

Query: 555  FELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTV 613
            F LEP  AAPYVEM+NIYA  G WDG A +R+MMK   +KK+PG+S++ +NGK  TFTV
Sbjct: 1150 FNLEPQMAAPYVEMSNIYAAAGMWDGFARIRSMMKLWNIKKYPGESVIQVNGKNHTFTV 1208

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana] gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/607 (58%), Positives = 450/607 (74%), Gaps = 3/607 (0%)

Query: 9    RLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLS 68
            RL +I   S++N WN QIREAV++N+  ++LLLFR MK+   EPNN TFPF+AKACA+L+
Sbjct: 613  RLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLA 672

Query: 69   DFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIV 128
            D    +M+H H++KSPFWSD+FV T  VDM+ KC+ +D A K+F++MP+RD  +WNAM+ 
Sbjct: 673  DVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLS 732

Query: 129  GFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA 188
            GF Q G  +K   LF  MRL  I  D VTVM L Q+A   K L LL+++H+ GI +GVD 
Sbjct: 733  GFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDV 792

Query: 189  DVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGG-CTYGDKFDDSLNFYR 247
             V+V NTWIS Y KC DL  A+LVF  I+ G RTVVSWNS+      +G+ F D+   Y 
Sbjct: 793  QVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAF-DAFGLYC 851

Query: 248  HMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCG 307
             M+ + F+PD++T ++L +SC  PE L QGRL+HSH IH G D D+  INT ISMYSK  
Sbjct: 852  LMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSE 911

Query: 308  DIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMIS 367
            D  SAR LFD M  RT VSWT MISGYA+KGD+DEAL LF AM  +GE PDLVT+LS+IS
Sbjct: 912  DTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLIS 971

Query: 368  GCGQSGALELGKWFDNYA-CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV 426
            GCG+ G+LE GKW D  A   G  +DNVM+CNALIDMYSKCGSI +AR++F   PEKTVV
Sbjct: 972  GCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVV 1031

Query: 427  SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLM 486
            +WTTMIAG ALNG F+EAL LF +M++LD +PN +TFLAVLQAC H+G LEKGW YF++M
Sbjct: 1032 TWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIM 1091

Query: 487  TKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEI 546
             +VY ++P L+HYSCM DLLGRKGKL+EAL+ +++M  K DAGIWG LL ACKIHRN++I
Sbjct: 1092 KQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKI 1151

Query: 547  GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHING 606
             E  A  LF LEP  AAPYVEMANIYA  G WDG A +R++MK+  +KK+PG+S++ +NG
Sbjct: 1152 AEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNG 1211

Query: 607  KTCTFTV 613
            K  +FTV
Sbjct: 1212 KNHSFTV 1218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like [Glycine max]

 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/603 (59%), Positives = 455/603 (75%)

Query: 13  IYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLY 72
           I R ST+  WNS  R  V++  A  AL+LFR+MK++ I PNN TFPF+ KACAKLS    
Sbjct: 12  INRFSTLFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRN 71

Query: 73  SQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQ 132
           SQ+IH H++KS F S+IFVQT  VDMY KC RL+ A+ +F +MP RD+ASWNAM++GFAQ
Sbjct: 72  SQIIHAHVLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQ 131

Query: 133 MGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSV 192
            GFL+++ CL  +MRL GI+ D VTV+ L  + +  K L+ L +V+SFGI IGV  DVSV
Sbjct: 132 SGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMDVSV 191

Query: 193 CNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYD 252
            NT I+AY+KC +L  AE +F  I  GLR+VVSWNS+I      +K   ++N Y+ M+  
Sbjct: 192 ANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDG 251

Query: 253 GFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSA 312
           GF PD++T+++LLSSC+ P+AL  G LVHSHG+  G D DV V+NTLI MYSKCGD+ SA
Sbjct: 252 GFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSA 311

Query: 313 RFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQS 372
           RFLF+GM D+T VSWT MIS YA+KG + EA+ LF AMEAAGE PDLVTVL++ISGCGQ+
Sbjct: 312 RFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQT 371

Query: 373 GALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMI 432
           GALELGKW DNY+ + GLKDNV+VCNALIDMY+KCG   DA+ELFY +  +TVVSWTTMI
Sbjct: 372 GALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMI 431

Query: 433 AGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV 492
             CALNG+  +AL+LF  M+E+ ++PN +TFLAVLQAC H G +E+G   FN+MT+ Y +
Sbjct: 432 TACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGI 491

Query: 493 NPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAY 552
           NP ++HYSCM DLLGRKG L+EAL+ ++SMP + D+GIW  LL ACK+H  +E+G+YV+ 
Sbjct: 492 NPGIDHYSCMVDLLGRKGHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSE 551

Query: 553 RLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFT 612
           +LFELEP  A PYVEMANIYA    W+GVA +R  MK  QV+K PGQS++ +NGK   FT
Sbjct: 552 QLFELEPQVAVPYVEMANIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVNGKPTIFT 611

Query: 613 VED 615
           VED
Sbjct: 612 VED 614

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19191, mitochondrial; Flags: Precursor gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/607 (58%), Positives = 450/607 (74%), Gaps = 3/607 (0%)

Query: 9   RLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLS 68
           RL +I   S++N WN QIREAV++N+  ++LLLFR MK+   EPNN TFPF+AKACA+L+
Sbjct: 7   RLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLA 66

Query: 69  DFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIV 128
           D    +M+H H++KSPFWSD+FV T  VDM+ KC+ +D A K+F++MP+RD  +WNAM+ 
Sbjct: 67  DVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLS 126

Query: 129 GFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA 188
           GF Q G  +K   LF  MRL  I  D VTVM L Q+A   K L LL+++H+ GI +GVD 
Sbjct: 127 GFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDV 186

Query: 189 DVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGG-CTYGDKFDDSLNFYR 247
            V+V NTWIS Y KC DL  A+LVF  I+ G RTVVSWNS+      +G+ F D+   Y 
Sbjct: 187 QVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAF-DAFGLYC 245

Query: 248 HMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCG 307
            M+ + F+PD++T ++L +SC  PE L QGRL+HSH IH G D D+  INT ISMYSK  
Sbjct: 246 LMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSE 305

Query: 308 DIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMIS 367
           D  SAR LFD M  RT VSWT MISGYA+KGD+DEAL LF AM  +GE PDLVT+LS+IS
Sbjct: 306 DTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLIS 365

Query: 368 GCGQSGALELGKWFDNYA-CSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV 426
           GCG+ G+LE GKW D  A   G  +DNVM+CNALIDMYSKCGSI +AR++F   PEKTVV
Sbjct: 366 GCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVV 425

Query: 427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLM 486
           +WTTMIAG ALNG F+EAL LF +M++LD +PN +TFLAVLQAC H+G LEKGW YF++M
Sbjct: 426 TWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIM 485

Query: 487 TKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEI 546
            +VY ++P L+HYSCM DLLGRKGKL+EAL+ +++M  K DAGIWG LL ACKIHRN++I
Sbjct: 486 KQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKI 545

Query: 547 GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHING 606
            E  A  LF LEP  AAPYVEMANIYA  G WDG A +R++MK+  +KK+PG+S++ +NG
Sbjct: 546 AEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNG 605

Query: 607 KTCTFTV 613
           K  +FTV
Sbjct: 606 KNHSFTV 612

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582516|ref|XP_002532043.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528286|gb|EEF30333.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 287/443 (64%), Positives = 355/443 (80%)

Query: 18  TINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIH 77
           TIN +NSQIREAV++N AHKA+ LFR++K+  IEPNN TFPFI KACAKLS+  YSQ+IH
Sbjct: 2   TINLFNSQIREAVNQNCAHKAISLFRQLKQKGIEPNNFTFPFILKACAKLSNLHYSQVIH 61

Query: 78  GHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLE 137
            H++KSPF+S++FVQT ++DM  KC +LD AY +F KMP RDV SWNAM++GFAQ+GF E
Sbjct: 62  THVIKSPFYSNVFVQTALLDMCVKCHQLDIAYNVFVKMPKRDVTSWNAMLLGFAQLGFSE 121

Query: 138 KVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI 197
           +V C+F  MR  G+  D VT+MG++ A    K L L KSVHSFGI IG+  DVSV NTWI
Sbjct: 122 RVFCMFREMRFAGVFPDSVTLMGVSGAISCMKDLELAKSVHSFGIRIGIHNDVSVANTWI 181

Query: 198 SAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPD 257
           S YAKC DL MAE VF GIE GLR+VVSWNS+I G  Y +K  D+LN Y+ M++DGF PD
Sbjct: 182 SLYAKCYDLAMAESVFNGIEVGLRSVVSWNSMIAGYAYLEKRIDALNSYKRMLHDGFMPD 241

Query: 258 VTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFD 317
           ++T+V+LLSSC+ PEA+ QG  VHSHGI +G D ++ V NTLISMYSK GD+ SAR LFD
Sbjct: 242 ISTIVTLLSSCLQPEAVRQGMQVHSHGIRFGCDSEIHVANTLISMYSKFGDVYSARCLFD 301

Query: 318 GMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALEL 377
            MC+R+ V+WT+MISGYA+KG++DEAL+LF AMEAAGE PDLVTVLS+ISGCGQ+G LE+
Sbjct: 302 SMCNRSCVTWTSMISGYAEKGNMDEALKLFNAMEAAGEKPDLVTVLSVISGCGQTGILEV 361

Query: 378 GKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCAL 437
           GKW   YA S  LK NV+VCNALIDMY+KCGSI DA +LF  +P++TVV+WTTMIAGCAL
Sbjct: 362 GKWIHVYADSNCLKHNVVVCNALIDMYAKCGSIDDAWDLFNTMPDRTVVTWTTMIAGCAL 421

Query: 438 NGEFVEALDLFHQMMELDLRPNR 460
           NG F E+LDLF+QM++  L+PN 
Sbjct: 422 NGLFKESLDLFYQMIDFGLKPNH 444

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 241/594 (40%), Positives = 355/594 (59%), Gaps = 2/594 (0%)

Query: 22  WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIV 81
           W   I   V     +KAL L+ +M++  I P+ L F  + KAC   SD    + +H  I+
Sbjct: 88  WKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDII 147

Query: 82  KSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLC 141
              F SD+ V T +  MY KC  L+ A ++FD+MP RDV SWNA+I G++Q G   + L 
Sbjct: 148 ARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALA 207

Query: 142 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYA 201
           LF  M++ GI+ +  T++ +     H   L   K +H + I  G+++DV V N  ++ YA
Sbjct: 208 LFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYA 267

Query: 202 KCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTV 261
           KC ++  A  +F  +   +R V SWN+IIGG +   +  ++L F+  M   G +P+  T+
Sbjct: 268 KCGNVNTAHKLFERMP--IRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITM 325

Query: 262 VSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD 321
           VS+L +C    AL QG+ +H + I  GF+ +  V N L++MY+KCG+++SA  LF+ M  
Sbjct: 326 VSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPK 385

Query: 322 RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWF 381
           +  V+W A+ISGY+Q G   EAL LF  M+A G  PD   ++S++  C    ALE GK  
Sbjct: 386 KNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQI 445

Query: 382 DNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEF 441
             Y    G + NV+V   L+D+Y+KCG++  A++LF  +PE+ VVSWTTMI    ++G  
Sbjct: 446 HGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHG 505

Query: 442 VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSC 501
            +AL LF +M E   + + + F A+L AC+HAG +++G  YF  M   Y + P+L HY+C
Sbjct: 506 EDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYAC 565

Query: 502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561
           + DLLGR G L EA   +++M ++ DA +WG LL AC+IH NIE+GE  A  LFEL+P +
Sbjct: 566 LVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDN 625

Query: 562 AAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED 615
           A  YV ++NIYA   RW+ VA LR MMK   VKK PG S+V ++    TF V D
Sbjct: 626 AGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGD 679

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Cucumis sativus]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/590 (37%), Positives = 346/590 (58%), Gaps = 2/590 (0%)

Query: 22  WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIV 81
           +++ ++     +    AL    RM+ +D++P    F ++ K C   +D    + IHG ++
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174

Query: 82  KSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLC 141
            + F +++F  T +V+MYAKC ++D AYK+FD+MP+RD+ SWN +I GF+Q GF +K L 
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALE 234

Query: 142 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYA 201
           L   M+  G + D +T++ +  AA     L + KS+H + I  G    V++       Y+
Sbjct: 235 LVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYS 294

Query: 202 KCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTV 261
           KC  ++ A L+F G+++  +TVVSWNS++ G     + + ++  +  M+ +G  P   T+
Sbjct: 295 KCGSVETARLIFDGMDQ--KTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352

Query: 262 VSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD 321
           +  L +C     L +G+ VH          D+SV+N+LISMYSKC  +D A  +F+ +  
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNG 412

Query: 322 RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWF 381
           RT VSW AMI GYAQ G + EAL  F  M++ G  PD  T++S+I    +       KW 
Sbjct: 413 RTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWI 472

Query: 382 DNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEF 441
                   L  N+ V  AL+DMYSKCG+I  AR+LF  + ++ V++W  MI G   +G  
Sbjct: 473 HGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLG 532

Query: 442 VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSC 501
             ALDLF +M +  + PN +T+L+V+ AC+H+G +++G  +F  M + Y + P ++HY  
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGA 592

Query: 502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561
           M DLLGR G++KEA DF+++MPI     ++G +L ACKIH+NIE+GE  A +LFEL P  
Sbjct: 593 MVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDE 652

Query: 562 AAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTF 611
              +V +ANIYA   +W  VA +R  M++  +KK PG S+V +  +  +F
Sbjct: 653 GGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSF 702

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	615
TAIR|locus:4515103421	654	AT4G19191 "AT4G19191" [Arabido	0.982	0.923	0.581	3.6e-192
TAIR|locus:2202074	809	CRR22 "CHLORORESPIRATORY REDUC	0.956	0.726	0.352	1.6e-104
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.962	0.679	0.341	9.1e-100
TAIR|locus:2054131	697	SLO2 "AT2G13600" [Arabidopsis	0.517	0.456	0.413	1.1e-95
TAIR|locus:2141171	857	AT4G21300 [Arabidopsis thalian	0.960	0.689	0.327	3e-92
TAIR|locus:2181201	691	AT5G27110 [Arabidopsis thalian	0.967	0.861	0.348	3e-92
TAIR|locus:2125899	990	AT4G33170 [Arabidopsis thalian	0.959	0.595	0.336	3.9e-92
TAIR|locus:2119440	1064	AT4G13650 [Arabidopsis thalian	0.959	0.554	0.338	1e-91
TAIR|locus:2089333	654	AT3G16610 "AT3G16610" [Arabido	0.954	0.897	0.342	7.3e-91
TAIR|locus:2007116	787	AT1G69350 "AT1G69350" [Arabido	0.951	0.743	0.329	1.9e-90

TAIR|locus:4515103421 AT4G19191 "AT4G19191" [Arabidopsis thaliana (taxid:3702)]

 Score = 1862 (660.5 bits), Expect = 3.6e-192, P = 3.6e-192
 Identities = 353/607 (58%), Positives = 442/607 (72%)

Query:     9 RLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLS 68
             RL +I   S++N WN QIREAV++N+  ++LLLFR MK+   EPNN TFPF+AKACA+L+
Sbjct:     7 RLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLA 66

Query:    69 DFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIV 128
             D    +M+H H++KSPFWSD+FV T  VDM+ KC+ +D A K+F++MP+RD  +WNAM+ 
Sbjct:    67 DVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLS 126

Query:   129 GFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA 188
             GF Q G  +K   LF  MRL  I  D VTVM L Q+A   K L LL+++H+ GI +GVD 
Sbjct:   127 GFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDV 186

Query:   189 DVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCT-YGDKFDDSLNFYR 247
              V+V NTWIS Y KC DL  A+LVF  I+ G RTVVSWNS+    + +G+ FD +   Y 
Sbjct:   187 QVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFD-AFGLYC 245

Query:   248 HMIYDGFRPDXXXXXXXXXXXXXPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCG 307
              M+ + F+PD             PE L QGRL+HSH IH G D D+  INT ISMYSK  
Sbjct:   246 LMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSE 305

Query:   308 DIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMIS 367
             D  SAR LFD M  RT VSWT MISGYA+KGD+DEAL LF AM  +GE PDLVT+LS+IS
Sbjct:   306 DTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLIS 365

Query:   368 GCGQSGALELGKWFDNYACSGGLK-DNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV 426
             GCG+ G+LE GKW D  A   G K DNVM+CNALIDMYSKCGSI +AR++F   PEKTVV
Sbjct:   366 GCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVV 425

Query:   427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLM 486
             +WTTMIAG ALNG F+EAL LF +M++LD +PN +TFLAVLQAC H+G LEKGW YF++M
Sbjct:   426 TWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIM 485

Query:   487 TKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEI 546
              +VY ++P L+HYSCM DLLGRKGKL+EAL+ +++M  K DAGIWG LL ACKIHRN++I
Sbjct:   486 KQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKI 545

Query:   547 GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHING 606
              E  A  LF LEP  AAPYVEMANIYA  G WDG A +R++MK+  +KK+PG+S++ +NG
Sbjct:   546 AEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNG 605

Query:   607 KTCTFTV 613
             K  +FTV
Sbjct:   606 KNHSFTV 612

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)]

 Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
 Identities = 208/590 (35%), Positives = 328/590 (55%)

Query:    22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIV 81
             +++ ++     ++  KAL  F RM+ +D+EP    F ++ K C   ++    + IHG +V
Sbjct:   103 YHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLV 162

Query:    82 KSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLC 141
             KS F  D+F  T + +MYAKC +++ A K+FD+MP+RD+ SWN ++ G++Q G     L 
Sbjct:   163 KSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALE 222

Query:   142 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYA 201
             +  +M    ++  F+T++ +  A    + +S+ K +H + +  G D+ V++    +  YA
Sbjct:   223 MVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYA 282

Query:   202 KCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDXXXX 261
             KC  L+ A  +F G+ E  R VVSWNS+I      +   +++  ++ M+ +G +P     
Sbjct:   283 KCGSLETARQLFDGMLE--RNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSV 340

Query:   262 XXXXXXXXXPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD 321
                         L +GR +H   +  G D +VSV+N+LISMY KC ++D+A  +F  +  
Sbjct:   341 MGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400

Query:   322 RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWF 381
             RT VSW AMI G+AQ G   +AL  F  M +    PD  T +S+I+   +       KW 
Sbjct:   401 RTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWI 460

Query:   382 DNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEF 441
                     L  NV V  AL+DMY+KCG+I  AR +F  + E+ V +W  MI G   +G  
Sbjct:   461 HGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFG 520

Query:   442 VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSC 501
               AL+LF +M +  ++PN VTFL+V+ AC+H+G +E G   F +M + Y +   ++HY  
Sbjct:   521 KAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGA 580

Query:   502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561
             M DLLGR G+L EA DF+  MP+K    ++G +L AC+IH+N+   E  A RLFEL P  
Sbjct:   581 MVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDD 640

Query:   562 AAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTF 611
                +V +ANIY     W+ V  +R  M R  ++K PG S+V I  +  +F
Sbjct:   641 GGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSF 690

GO:0005739 "mitochondrion" evidence=ISM

GO:0004519 "endonuclease activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA;IMP

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
 Identities = 203/595 (34%), Positives = 326/595 (54%)

Query:    22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIV 81
             WN  + E     +   ++ LF++M  + +E ++ TF  ++K+ + L      + +HG I+
Sbjct:   163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222

Query:    82 KSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLC 141
             KS F     V  ++V  Y K  R+D A K+FD+M +RDV SWN++I G+   G  EK L 
Sbjct:   223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282

Query:   142 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYA 201
             +F  M + GI+ D  T++ +      ++ +SL ++VHS G+      +   CNT +  Y+
Sbjct:   283 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYS 342

Query:   202 KCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDXXXX 261
             KC DL  A+ VFR + +  R+VVS+ S+I G        +++  +  M  +G  PD    
Sbjct:   343 KCGDLDSAKAVFREMSD--RSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400

Query:   262 XXXXXXXXXPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD 321
                         L +G+ VH          D+ V N L+ MY+KCG +  A  +F  M  
Sbjct:   401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460

Query:   322 RTRVSWTAMISGYAQKGDLDEALRLF-FAMEAAGEVPDLVTVLSMISGCGQSGALELGKW 380
             +  +SW  +I GY++    +EAL LF   +E     PD  TV  ++  C    A + G+ 
Sbjct:   461 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 520

Query:   381 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGE 440
                Y    G   +  V N+L+DMY+KCG++  A  LF  +  K +VSWT MIAG  ++G 
Sbjct:   521 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 580

Query:   441 FVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYS 500
               EA+ LF+QM +  +  + ++F+++L AC+H+G +++GW +FN+M    ++ P + HY+
Sbjct:   581 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 640

Query:   501 CMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560
             C+ D+L R G L +A  F+++MPI  DA IWG LLC C+IH ++++ E VA ++FELEP 
Sbjct:   641 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPE 700

Query:   561 SAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED 615
             +   YV MANIYA   +W+ V  LR  + +  ++K PG S + I G+   F   D
Sbjct:   701 NTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGD 755

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
 Identities = 134/324 (41%), Positives = 197/324 (60%)

Query:   298 TLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVP 357
             ++IS Y+      +AR +F  M +R  VSW A+I+GY Q G+ +EAL LF  ++     P
Sbjct:   325 SMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCP 384

Query:   358 DLVTVLSMISGCGQSGALELGKWFDNYACSGGLK------DNVMVCNALIDMYSKCGSIG 411
                +  +++  C     L LG     +    G K      D++ V N+LIDMY KCG + 
Sbjct:   385 THYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVE 444

Query:   412 DARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACT 471
             +   +F  + E+  VSW  MI G A NG   EAL+LF +M+E   +P+ +T + VL AC 
Sbjct:   445 EGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACG 504

Query:   472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIW 531
             HAGF+E+G  YF+ MT+ + V P  +HY+CM DLLGR G L+EA   ++ MP++ D+ IW
Sbjct:   505 HAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIW 564

Query:   532 GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN 591
             G+LL ACK+HRNI +G+YVA +L E+EP ++ PYV ++N+YA  G+W+ V N+R  M++ 
Sbjct:   565 GSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKE 624

Query:   592 QVKKFPGQSLVHINGKTCTFTVED 615
              V K PG S + I G    F V+D
Sbjct:   625 GVTKQPGCSWIKIQGHDHVFMVKD 648

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0010182 "sugar mediated signaling pathway" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)]

 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 195/596 (32%), Positives = 318/596 (53%)

Query:    22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACA-KLSDFLYSQMIHGHI 80
             WN  +            +  F  M+ + I PN +TF  +   CA KL   L  Q+ HG +
Sbjct:   207 WNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQL-HGLV 265

Query:    81 VKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVL 140
             V S    +  ++ +++ MY+KC R D A KLF  M   D  +WN MI G+ Q G +E+ L
Sbjct:   266 VVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESL 325

Query:   141 CLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAY 200
               FY M   G+  D +T   L  +    ++L   K +H + +   +  D+ + +  I AY
Sbjct:   326 TFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAY 385

Query:   201 AKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDXXX 260
              KC  + MA+ +F         VV + ++I G  +   + DSL  +R ++     P+   
Sbjct:   386 FKCRGVSMAQNIFSQCNSV--DVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEIT 443

Query:   261 XXXXXXXXXXPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC 320
                         AL  GR +H   I  GFD   ++   +I MY+KCG ++ A  +F+ + 
Sbjct:   444 LVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLS 503

Query:   321 DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKW 380
              R  VSW +MI+  AQ  +   A+ +F  M  +G   D V++ + +S C    +   GK 
Sbjct:   504 KRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKA 563

Query:   381 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGE 440
                +     L  +V   + LIDMY+KCG++  A  +F  + EK +VSW ++IA C  +G+
Sbjct:   564 IHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGK 623

Query:   441 FVEALDLFHQMMELD-LRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHY 499
               ++L LFH+M+E   +RP+++TFL ++ +C H G +++G  +F  MT+ Y + P+  HY
Sbjct:   624 LKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHY 683

Query:   500 SCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEP 559
             +C+ DL GR G+L EA + V+SMP   DAG+WGTLL AC++H+N+E+ E  + +L +L+P
Sbjct:   684 ACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDP 743

Query:   560 HSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED 615
              ++  YV ++N +A    W+ V  +R++MK  +V+K PG S + IN +T  F   D
Sbjct:   744 SNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGD 799

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2181201 AT5G27110 [Arabidopsis thaliana (taxid:3702)]

 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 210/603 (34%), Positives = 319/603 (52%)

Query:    17 STINQWNSQIREAVDKNEA-HKALLLFRRMKKNDI-EPNNLTFPFIAKACAKLSDFLYSQ 74
             S +  WNS +     KN   H  L +F+R+    I  P++ TFP + KA   L      +
Sbjct:    69 SDVYIWNS-LMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGR 127

Query:    75 MIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMG 134
             MIH  +VKS +  D+ V +++V MYAK +  + + ++FD+MP+RDVASWN +I  F Q G
Sbjct:   128 MIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSG 187

Query:   135 FLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCN 194
               EK L LF  M   G + + V++     A      L   K +H   +  G + D  V +
Sbjct:   188 EAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNS 247

Query:   195 TWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGG-CTYGDKFDDSLNFYRHMIYDG 253
               +  Y KC+ L++A  VF+ +    +++V+WNS+I G    GD     +     MI +G
Sbjct:   248 ALVDMYGKCDCLEVAREVFQKMPR--KSLVAWNSMIKGYVAKGDS-KSCVEILNRMIIEG 304

Query:   254 FRPDXXXXXXXXXXXXXPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSAR 313
              RP                 L+ G+ +H + I    + D+ V  +LI +Y KCG+ + A 
Sbjct:   305 TRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAE 364

Query:   314 FLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSG 373
              +F         SW  MIS Y   G+  +A+ ++  M + G  PD+VT  S++  C Q  
Sbjct:   365 TVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLA 424

Query:   374 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIA 433
             ALE GK          L+ + ++ +AL+DMYSKCG+  +A  +F ++P+K VVSWT MI+
Sbjct:   425 ALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMIS 484

Query:   434 GCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVN 493
                 +G+  EAL  F +M +  L+P+ VT LAVL AC HAG +++G  +F+ M   Y + 
Sbjct:   485 AYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIE 544

Query:   494 PELNHYSCMADLLGRKGKLKEALDFVQSMPIKSD-AGIWGTLLCACKIHRNIEIGEYVAY 552
             P + HYSCM D+LGR G+L EA + +Q  P  SD A +  TL  AC +H    +G+ +A 
Sbjct:   545 PIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIAR 604

Query:   553 RLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFT 612
              L E  P  A+ Y+ + N+YA G  WD    +R  MK   ++K PG S + ++ K C F 
Sbjct:   605 LLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCHFF 664

Query:   613 VED 615
              ED
Sbjct:   665 AED 667

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 200/594 (33%), Positives = 318/594 (53%)

Query:    23 NSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVK 82
             N  + E +   +    L  F  M ++D+E + +TF  +     K+      Q +H   +K
Sbjct:   284 NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALK 343

Query:    83 SPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCL 142
                   + V  ++++MY K  +   A  +FD M +RD+ SWN++I G AQ G   + +CL
Sbjct:   344 LGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCL 403

Query:   143 FYNMRLVGIQADFVTVMGLTQAAIHAKH-LSLLKSVHSFGIHIGVDADVSVCNTWISAYA 201
             F  +   G++ D  T+  + +AA      LSL K VH   I I   +D  V    I AY+
Sbjct:   404 FMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYS 463

Query:   202 KCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDXXXX 261
             +   +K AE++F   E     +V+WN+++ G T       +L  +  M   G R D    
Sbjct:   464 RNRCMKEAEILF---ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTL 520

Query:   262 XXXXXXXXXPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD 321
                        A+ QG+ VH++ I  G+DLD+ V + ++ MY KCGD+ +A+F FD +  
Sbjct:   521 ATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV 580

Query:   322 RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWF 381
                V+WT MISG  + G+ + A  +F  M   G +PD  T+ ++        ALE G+  
Sbjct:   581 PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQI 640

Query:   382 DNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEF 441
                A      ++  V  +L+DMY+KCGSI DA  LF  +    + +W  M+ G A +GE 
Sbjct:   641 HANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEG 700

Query:   442 VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSC 501
              E L LF QM  L ++P++VTF+ VL AC+H+G + + + +   M   Y + PE+ HYSC
Sbjct:   701 KETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSC 760

Query:   502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS 561
             +AD LGR G +K+A + ++SM +++ A ++ TLL AC++  + E G+ VA +L ELEP  
Sbjct:   761 LADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLD 820

Query:   562 AAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED 615
             ++ YV ++N+YA   +WD +   RTMMK ++VKK PG S + +  K   F V+D
Sbjct:   821 SSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDD 874

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)]

 Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
 Identities = 202/596 (33%), Positives = 310/596 (52%)

Query:    22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIV 81
             +N+ I          KA+ LF+RM  + +EP++ T   +  AC+        Q +H +  
Sbjct:   357 YNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTT 416

Query:    82 KSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLC 141
             K  F S+  ++  ++++YAKC  ++ A   F +    +V  WN M+V +  +  L     
Sbjct:   417 KLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFR 476

Query:   142 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYA 201
             +F  M++  I  +  T   + +  I    L L + +HS  I      +  VC+  I  YA
Sbjct:   477 IFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYA 536

Query:   202 KCNDLKMA-ELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDD-SLNFYRHMIYDGFRPDXX 259
             K   L  A +++ R    G + VVSW ++I G T  + FDD +L  +R M+  G R D  
Sbjct:   537 KLGKLDTAWDILIRFA--G-KDVVSWTTMIAGYTQYN-FDDKALTTFRQMLDRGIRSDEV 592

Query:   260 XXXXXXXXXXXPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM 319
                         +AL +G+ +H+     GF  D+   N L+++YS+CG I+ +   F+  
Sbjct:   593 GLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQT 652

Query:   320 CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGK 379
                  ++W A++SG+ Q G+ +EALR+F  M   G   +  T  S +    ++  ++ GK
Sbjct:   653 EAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGK 712

Query:   380 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNG 439
                      G      VCNALI MY+KCGSI DA + F  +  K  VSW  +I   + +G
Sbjct:   713 QVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHG 772

Query:   440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHY 499
                EALD F QM+  ++RPN VT + VL AC+H G ++KG  YF  M   Y ++P+  HY
Sbjct:   773 FGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHY 832

Query:   500 SCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEP 559
              C+ D+L R G L  A +F+Q MPIK DA +W TLL AC +H+N+EIGE+ A+ L ELEP
Sbjct:   833 VCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEP 892

Query:   560 HSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED 615
               +A YV ++N+YA+  +WD     R  MK   VKK PGQS + +     +F V D
Sbjct:   893 EDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGD 948

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089333 AT3G16610 "AT3G16610" [Arabidopsis thaliana (taxid:3702)]

 Score = 906 (324.0 bits), Expect = 7.3e-91, P = 7.3e-91
 Identities = 206/601 (34%), Positives = 323/601 (53%)

Query:     8 PRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKL 67
             PR+N I        W+  IR     + A KAL L+ +M  + + P   T+PF+ KACA L
Sbjct:    64 PRINPI-------AWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGL 116

Query:    68 SDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMI 127
                   ++IH H+  S F +D++V T +VD YAKC  L+ A K+FD+MP RD+ +WNAMI
Sbjct:   117 RAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMI 176

Query:   128 VGFAQMGFLEKVLCLFYNMRLV-GIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGV 186
              GF+    L  V+ LF +MR + G+  +  T++G+  A   A  L   K+VH +   +G 
Sbjct:   177 SGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGF 236

Query:   187 DADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLN-F 245
               D+ V    +  YAK   +  A  VF    +  +  V+W+++IGG    +   ++   F
Sbjct:   237 SNDLVVKTGILDVYAKSKCIIYARRVFD--LDFKKNEVTWSAMIGGYVENEMIKEAGEVF 294

Query:   246 YRHMIYDGFRPDXXXXXXXXXXXXXPEA-LVQGRLVHSHGIHYGFDLDVSVINTLISMYS 304
             ++ ++ D                      L  GR VH + +  GF LD++V NT+IS Y+
Sbjct:   295 FQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYA 354

Query:   305 KCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLS 364
             K G +  A   F  +  +  +S+ ++I+G       +E+ RLF  M  +G  PD+ T+L 
Sbjct:   355 KYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLG 414

Query:   365 MISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKT 424
             +++ C    AL  G     Y    G   N  +CNAL+DMY+KCG +  A+ +F  + ++ 
Sbjct:   415 VLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRD 474

Query:   425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFN 484
             +VSW TM+ G  ++G   EAL LF+ M E  + P+ VT LA+L AC+H+G +++G   FN
Sbjct:   475 IVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFN 534

Query:   485 LMTKV-YQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRN 543
              M++  + V P ++HY+CM DLL R G L EA DFV  MP + D  + GTLL AC  ++N
Sbjct:   535 SMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKN 594

Query:   544 IEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVH 603
              E+G  V+ ++  L   +    V ++N Y+   RW+  A +R + K+  + K PG S V 
Sbjct:   595 AELGNEVSKKMQSLG-ETTESLVLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSWVD 653

Query:   604 I 604
             +
Sbjct:   654 V 654

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006302 "double-strand break repair" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

TAIR|locus:2007116 AT1G69350 "AT1G69350" [Arabidopsis thaliana (taxid:3702)]

 Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
 Identities = 195/591 (32%), Positives = 317/591 (53%)

Query:    22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIV 81
             W++ +   ++  E  KAL +F+ M  + +EP+ +T   + + CA+L     ++ +HG I 
Sbjct:   170 WSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQIT 229

Query:    82 KSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLC 141
             +  F  D  +  +++ MY+KC  L  + ++F+K+  ++  SW AMI  + +  F EK L 
Sbjct:   230 RKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALR 289

Query:   142 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADV-SVCNTWISAY 200
              F  M   GI+ + VT+  +  +      +   KSVH F +   +D +  S+    +  Y
Sbjct:   290 SFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELY 349

Query:   201 AKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDXXX 260
             A+C  L   E V R + +  R +V+WNS+I    +      +L  +R M+    +PD   
Sbjct:   350 AECGKLSDCETVLRVVSD--RNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFT 407

Query:   261 XXXXXXXXXXPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC 320
                          +  G+ +H H I      D  V N+LI MYSK G +DSA  +F+ + 
Sbjct:   408 LASSISACENAGLVPLGKQIHGHVIRTDVS-DEFVQNSLIDMYSKSGSVDSASTVFNQIK 466

Query:   321 DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKW 380
              R+ V+W +M+ G++Q G+  EA+ LF  M  +    + VT L++I  C   G+LE GKW
Sbjct:   467 HRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKW 526

Query:   381 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGE 440
               +     GLKD +    ALIDMY+KCG +  A  +F A+  +++VSW++MI    ++G 
Sbjct:   527 VHHKLIISGLKD-LFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGR 585

Query:   441 FVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYS 500
                A+  F+QM+E   +PN V F+ VL AC H+G +E+G  YFNLM K + V+P   H++
Sbjct:   586 IGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLM-KSFGVSPNSEHFA 644

Query:   501 CMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH 560
             C  DLL R G LKEA   ++ MP  +DA +WG+L+  C+IH+ ++I + +   L ++   
Sbjct:   645 CFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDLSDIVTD 704

Query:   561 SAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTF 611
                 Y  ++NIYA  G W+    LR+ MK + +KK PG S + I+ K   F
Sbjct:   705 DTGYYTLLSNIYAEEGEWEEFRRLRSAMKSSNLKKVPGYSAIEIDQKVFRF 755

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0C8Q2	PP323_ARATH	No assigned EC number	0.5864	0.9821	0.9235	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	615
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-146
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-92
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-88
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	8e-75
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-60
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-48
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	7e-30
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-17
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-13
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-08
pfam01535	31	pfam01535, PPR, PPR repeat	4e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-05
pfam01535	31	pfam01535, PPR, PPR repeat	4e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.003

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  445 bits (1146), Expect = e-146
 Identities = 210/579 (36%), Positives = 315/579 (54%), Gaps = 4/579 (0%)

Query: 37  KALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMV 96
           +AL L+ RM    + P+  TFP + + C  + D    + +H H+V+  F  D+ V   ++
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229

Query: 97  DMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFV 156
            MY KC  +  A  +FD+MP RD  SWNAMI G+ + G   + L LF+ MR + +  D +
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289

Query: 157 TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGI 216
           T+  +  A        L + +H + +  G   DVSVCN+ I  Y        AE VF  +
Sbjct: 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349

Query: 217 EEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQ 276
           E   +  VSW ++I G       D +L  Y  M  D   PD  T+ S+LS+C C   L  
Sbjct: 350 E--TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407

Query: 277 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQ 336
           G  +H      G    V V N LI MYSKC  ID A  +F  + ++  +SWT++I+G   
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467

Query: 337 KGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV 396
                EAL  F  M    + P+ VT+++ +S C + GAL  GK    +    G+  +  +
Sbjct: 468 NNRCFEALIFFRQMLLTLK-PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526

Query: 397 CNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDL 456
            NAL+D+Y +CG +  A   F    EK VVSW  ++ G   +G+   A++LF++M+E  +
Sbjct: 527 PNALLDLYVRCGRMNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585

Query: 457 RPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL 516
            P+ VTF+++L AC+ +G + +G  YF+ M + Y + P L HY+C+ DLLGR GKL EA 
Sbjct: 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645

Query: 517 DFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG 576
           +F+  MPI  D  +WG LL AC+IHR++E+GE  A  +FEL+P+S   Y+ + N+YA  G
Sbjct: 646 NFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705

Query: 577 RWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED 615
           +WD VA +R  M+ N +   PG S V + GK   F  +D
Sbjct: 706 KWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDD 744

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  299 bits (768), Expect = 1e-92
 Identities = 152/459 (33%), Positives = 239/459 (52%), Gaps = 2/459 (0%)

Query: 157 TVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGI 216
           T   L +A I  K +  +K+V+      G + D  + N  +  + KC  L  A  +F  +
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184

Query: 217 EEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQ 276
            E  R + SW +IIGG      + ++   +R M  DG   +  T V +L +     +   
Sbjct: 185 PE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242

Query: 277 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQ 336
           G+ +H   +  G   D  V   LI MYSKCGDI+ AR +FDGM ++T V+W +M++GYA 
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302

Query: 337 KGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV 396
            G  +EAL L++ M  +G   D  T   MI    +   LE  K         G   +++ 
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362

Query: 397 CNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDL 456
             AL+D+YSK G + DAR +F  +P K ++SW  +IAG   +G   +A+++F +M+   +
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422

Query: 457 RPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL 516
            PN VTFLAVL AC ++G  E+GW  F  M++ +++ P   HY+CM +LLGR+G L EA 
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482

Query: 517 DFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG 576
             ++  P K    +W  LL AC+IH+N+E+G   A +L+ + P     YV + N+Y   G
Sbjct: 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSG 542

Query: 577 RWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED 615
           R    A +   +KR  +   P  + + +  +  +F   D
Sbjct: 543 RQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD 581

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  291 bits (747), Expect = 4e-88
 Identities = 175/555 (31%), Positives = 270/555 (48%), Gaps = 35/555 (6%)

Query: 16  SSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQM 75
           SS+ +  NSQ+R      +  +AL L   M++  +  +   +  + + C           
Sbjct: 48  SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSR 107

Query: 76  IHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGF 135
           +    + S     + +   M+ M+ +   L  A+ +F KMP+RD+ SWN ++ G+A+ G+
Sbjct: 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167

Query: 136 LEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNT 195
            ++ LCL++ M   G++ D  T   + +       L+  + VH+  +  G + DV V N 
Sbjct: 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227

Query: 196 WISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFR 255
            I+ Y KC D+  A LVF  +    R  +SWN++I G     +  + L  +  M      
Sbjct: 228 LITMYVKCGDVVSARLVFDRMP--RRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285

Query: 256 PDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFL 315
           PD+ T+ S++S+C        GR +H + +  GF +DVSV N+LI MY   G    A  +
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345

Query: 316 FDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGAL 375
           F  M  +  VSWTAMISGY + G  D+AL  +  ME     PD +T+ S++S C   G L
Sbjct: 346 FSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405

Query: 376 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGC 435
           ++G      A   GL   V+V NALI+MYSKC  I  A E+F+ +PEK V+SWT++IAG 
Sbjct: 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465

Query: 436 ALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACT-----------HAGFLEKGWGY-- 482
            LN    EAL  F QM+ L L+PN VT +A L AC            HA  L  G G+  
Sbjct: 466 RLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524

Query: 483 ------FNLMTKVYQVNPELNHY-SCMADLLG---------RKGKLKEALDFVQSM---P 523
                  +L  +  ++N   N + S   D++            GK   A++    M    
Sbjct: 525 FLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584

Query: 524 IKSDAGIWGTLLCAC 538
           +  D   + +LLCAC
Sbjct: 585 VNPDEVTFISLLCAC 599

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  255 bits (653), Expect = 8e-75
 Identities = 151/454 (33%), Positives = 226/454 (49%), Gaps = 35/454 (7%)

Query: 124 NAMIVGFAQMGFLEKVLCLFYNMRLVGIQAD---FVTVMGL-----TQAAIHAKHLSLLK 175
           N+ +      G LE+ L L  +M+ + +  D   +V +  L                 L 
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 176 SVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTY 235
           S  S G+ +G        N  +S + +  +L  A  VF  + E  R + SWN ++GG   
Sbjct: 115 SHPSLGVRLG--------NAMLSMFVRFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAK 164

Query: 236 GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSV 295
              FD++L  Y  M++ G RPDV T   +L +C     L +GR VH+H + +GF+LDV V
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224

Query: 296 INTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE 355
           +N LI+MY KCGD+ SAR +FD M  R  +SW AMISGY + G+  E L LFF M     
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284

Query: 356 VPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARE 415
            PDL+T+ S+IS C   G   LG+    Y    G   +V VCN+LI MY   GS G+A +
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344

Query: 416 LFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNRVTFLAVLQACTHAG 474
           +F  +  K  VSWT MI+G   NG   +AL+ +  +ME D + P+ +T  +VL AC   G
Sbjct: 345 VFSRMETKDAVSWTAMISGYEKNGLPDKALETY-ALMEQDNVSPDEITIASVLSACACLG 403

Query: 475 FLEKGWGYFNL------MTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDA 528
            L+ G     L      ++ V   N  +  YS       +   + +AL+   ++P K D 
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYS-------KCKCIDKALEVFHNIPEK-DV 455

Query: 529 GIWGTLLCACKI-HRNIEIGEYVAYRLFELEPHS 561
             W +++   ++ +R  E   +    L  L+P+S
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS 489

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  215 bits (548), Expect = 4e-60
 Identities = 123/448 (27%), Positives = 218/448 (48%), Gaps = 8/448 (1%)

Query: 22  WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIV 81
           WN+ I    +  E  + L LF  M++  ++P+ +T   +  AC  L D    + +HG++V
Sbjct: 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315

Query: 82  KSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLC 141
           K+ F  D+ V  +++ MY        A K+F +M  +D  SW AMI G+ + G  +K L 
Sbjct: 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375

Query: 142 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYA 201
            +  M    +  D +T+  +  A      L +   +H      G+ + V V N  I  Y+
Sbjct: 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435

Query: 202 KCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTV 261
           KC  +  A  VF  I E  + V+SW SII G    ++  ++L F+R M+    +P+  T+
Sbjct: 436 KCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTL 492

Query: 262 VSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD 321
           ++ LS+C    AL+ G+ +H+H +  G   D  + N L+ +Y +CG ++ A   F+   +
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHE 551

Query: 322 RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELG-KW 380
           +  VSW  +++GY   G    A+ LF  M  +G  PD VT +S++  C +SG +  G ++
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611

Query: 381 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK-TVVSWTTMIAGCALNG 439
           F +      +  N+     ++D+  + G + +A      +P       W  ++  C ++ 
Sbjct: 612 FHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH- 670

Query: 440 EFVEALDLFHQMMELDLRPNRVTFLAVL 467
             VE  +L  Q +  +L PN V +  +L
Sbjct: 671 RHVELGELAAQHI-FELDPNSVGYYILL 697

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  180 bits (458), Expect = 1e-48
 Identities = 137/504 (27%), Positives = 226/504 (44%), Gaps = 46/504 (9%)

Query: 24  SQIREAVDKNEAHKALLLFRRMKKN-DIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVK 82
           SQI + V      +AL LF  ++          T+  + +AC  L      + ++ H+  
Sbjct: 92  SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151

Query: 83  SPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCL 142
           S F  D ++   ++ M+ KC  L  A +LFD+MP+R++ASW  +I G    G   +   L
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFAL 211

Query: 143 FYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAK 202
           F  M   G  A+  T + + +A+         + +H   +  GV  D  V    I  Y+K
Sbjct: 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271

Query: 203 CNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVV 262
           C D++ A  VF G+ E  +T V+WNS++ G       +++L  Y  M   G   D  T  
Sbjct: 272 CGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329

Query: 263 SLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINT-LISMYSKCGDIDSARFLFDGMCD 321
            ++        L   +  H+  I  GF LD+ V NT L+ +YSK G ++ AR +FD M  
Sbjct: 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDARNVFDRMPR 388

Query: 322 RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGK-W 380
           +  +SW A+I+GY   G   +A+ +F  M A G  P+ VT L+++S C  SG  E G   
Sbjct: 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEI 448

Query: 381 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVS-WTTMIAGCALNG 439
           F + + +  +K   M    +I++  + G + +A  +    P K  V+ W  ++  C +  
Sbjct: 449 FQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI-- 506

Query: 440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNH 498
                    H+ +E          L  L A                  K+Y + PE LN+
Sbjct: 507 ---------HKNLE----------LGRLAA-----------------EKLYGMGPEKLNN 530

Query: 499 YSCMADLLGRKGKLKEALDFVQSM 522
           Y  + +L    G+  EA   V+++
Sbjct: 531 YVVLLNLYNSSGRQAEAAKVVETL 554

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  124 bits (314), Expect = 7e-30
 Identities = 73/248 (29%), Positives = 124/248 (50%), Gaps = 4/248 (1%)

Query: 22  WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIV 81
           W + I   VD     +A  LFR M ++  +    TF  + +A A L      Q +H  ++
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251

Query: 82  KSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLC 141
           K+    D FV   ++DMY+KC  ++ A  +FD MP++   +WN+M+ G+A  G+ E+ LC
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311

Query: 142 LFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNT-WISAY 200
           L+Y MR  G+  D  T   + +       L   K  H+  I  G   D+ V NT  +  Y
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI-VANTALVDLY 370

Query: 201 AKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTT 260
           +K   ++ A  VF  +    + ++SWN++I G     +   ++  +  MI +G  P+  T
Sbjct: 371 SKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428

Query: 261 VVSLLSSC 268
            +++LS+C
Sbjct: 429 FLAVLSAC 436

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 86.1 bits (213), Expect = 2e-17
 Identities = 40/147 (27%), Positives = 78/147 (53%)

Query: 18  TINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIH 77
           T   WNS +        + +AL L+  M+ + +  +  TF  + +  ++L+   +++  H
Sbjct: 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348

Query: 78  GHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLE 137
             ++++ F  DI   T +VD+Y+K  R++ A  +FD+MP +++ SWNA+I G+   G   
Sbjct: 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGT 408

Query: 138 KVLCLFYNMRLVGIQADFVTVMGLTQA 164
           K + +F  M   G+  + VT + +  A
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSA 435

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 72.2 bits (177), Expect = 4e-13
 Identities = 65/267 (24%), Positives = 115/267 (43%), Gaps = 32/267 (11%)

Query: 294 SVINTLISMYSKCGDIDSARFLF-----DGM---CDRTRVSWTAMISGYAQKGDLDEALR 345
           S  N L+S+ +   DID A  +       G+   C      +T +IS  A+ G +D    
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADC----KLYTTLISTCAKSGKVDAMFE 493

Query: 346 LFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYAC--SGGLKDNVMVCNALIDM 403
           +F  M  AG   ++ T  ++I GC ++G  ++ K F  Y    S  +K + +V NALI  
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAG--QVAKAFGAYGIMRSKNVKPDRVVFNALI-- 549

Query: 404 YSKCGSIGDARELFYALPEKTV---------VSWTTMIAGCALNGEFVEALDLFHQMMEL 454
            S CG  G     F  L E            ++   ++  CA  G+   A +++  + E 
Sbjct: 550 -SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608

Query: 455 DLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE 514
           +++     +   + +C+  G  +     ++ M K   V P+   +S + D+ G  G L +
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDK 667

Query: 515 ALDFVQSMP---IKSDAGIWGTLLCAC 538
           A + +Q      IK     + +L+ AC
Sbjct: 668 AFEILQDARKQGIKLGTVSYSSLMGAC 694

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 58.7 bits (142), Expect = 6e-09
 Identities = 85/381 (22%), Positives = 147/381 (38%), Gaps = 64/381 (16%)

Query: 191 SVCNTWISAYAKCNDLKMAELVFRGIEE-GLRT-VVSWNSIIGGCTYGDKFDDSLNFYRH 248
           SVC       A   D+  A  V R ++E GL+     + ++I  C    K D     +  
Sbjct: 445 SVC-------ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497

Query: 249 MIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGF------DLDVSVINTLISM 302
           M+  G   +V T  +L+  C        G++  + G  YG         D  V N LIS 
Sbjct: 498 MVNAGVEANVHTFGALIDGCA-----RAGQVAKAFGA-YGIMRSKNVKPDRVVFNALISA 551

Query: 303 YSKCGDIDSARFLFDGMCDRT---------RVSWTAMISGYAQKGDLDEALRLFFAMEAA 353
             + G +D A   FD + +            ++  A++   A  G +D A  ++  +   
Sbjct: 552 CGQSGAVDRA---FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608

Query: 354 G--EVPDLVTVLSMISGCGQSGALELGKWFDNYACS-------GGLKDNVMVCNALIDMY 404
                P++ T+   ++ C Q G  +       +A S        G+K + +  +AL+D+ 
Sbjct: 609 NIKGTPEVYTI--AVNSCSQKGDWD-------FALSIYDDMKKKGVKPDEVFFSALVDV- 658

Query: 405 SKCGSIGDARELFYALPEKT-------VVSWTTMIAGCALNGEFVEALDLFHQMMELDLR 457
              G  GD  + F  L +          VS+++++  C+    + +AL+L+  +  + LR
Sbjct: 659 --AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716

Query: 458 PNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALD 517
           P   T  A++ A      L K     + M K   + P    YS +     RK      LD
Sbjct: 717 PTVSTMNALITALCEGNQLPKALEVLSEM-KRLGLCPNTITYSILLVASERKDDADVGLD 775

Query: 518 FVQSMPIKSDAGIWGTLLCAC 538
            +     K D      ++C C
Sbjct: 776 LL--SQAKEDGIKPNLVMCRC 794

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 51.3 bits (124), Expect = 8e-09
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 325 VSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGC 369
           V++  +I GY +KG ++EAL+LF  M+  G  P++ T   +I G 
Sbjct: 4   VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.1 bits (121), Expect = 2e-08
 Identities = 15/48 (31%), Positives = 27/48 (56%)

Query: 423 KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC 470
             VV++ T+I G    G+  EAL LF++M +  ++PN  T+  ++   
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 55.7 bits (134), Expect = 6e-08
 Identities = 71/306 (23%), Positives = 127/306 (41%), Gaps = 28/306 (9%)

Query: 185 GVDADVSVCNTWISAYAKCNDLKMA-----ELVFRGIEEGLRTVVSWNSIIGGCTYGDKF 239
           G+ AD  +  T IS  AK   +        E+V  G+E  + T   + ++I GC    + 
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT---FGALIDGCARAGQV 523

Query: 240 DDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLV------HSHGIHYGFDLDV 293
             +   Y  M     +PD     +L+S+C    A+ +   V       +H I    D D 
Sbjct: 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI----DPDH 579

Query: 294 SVINTLISMYSKCGDIDSARFLFDGMCDRTRVS-----WTAMISGYAQKGDLDEALRLFF 348
             +  L+   +  G +D A+ ++  M     +      +T  ++  +QKGD D AL ++ 
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQ-MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638

Query: 349 AMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG 408
            M+  G  PD V   +++   G +G L+        A   G+K   +  ++L+   S   
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698

Query: 409 SIGDARELFYALP----EKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFL 464
           +   A EL+  +       TV +   +I       +  +AL++  +M  L L PN +T+ 
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758

Query: 465 AVLQAC 470
            +L A 
Sbjct: 759 ILLVAS 764

Length = 1060

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 325 VSWTAMISGYAQKGDLDEALRLFFAMEAAG 354
           V++ ++ISGY + G L+EAL LF  M+  G
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN 459
           V++ T+I G    G   EAL+LF +M E  + P+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 325 VSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPD 358
           V++  +I G  + G ++EAL LF  M+  G  PD
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 426 VSWTTMIAGCALNGEFVEALDLFHQMMELDL 456
           V++ ++I+G    G+  EAL+LF +M E  +
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.5 bits (91), Expect = 3e-04
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAK 66
          +N+ I     K +  +AL LF  MKK  I+PN  T+  +     K
Sbjct: 6  YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 292 DVSVINTLISMYSKCGDIDSARFLFDGMCDR----TRVSWTAMISGYAQ 336
           DV   NTLI  Y K G ++ A  LF+ M  R       +++ +I G  +
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 37.7 bits (89), Expect = 4e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 319 MCDRTRVSWTAMISGYAQKGDLDEALRLFFAME 351
                 V++  +I G  + G +DEA+ L   ME
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 57/237 (24%), Positives = 101/237 (42%), Gaps = 30/237 (12%)

Query: 50  IEPNNLTFPFIAKACAKLSDF-----LYSQMIHGHIVK-SPFWSDIFVQTTMVDMYAKCD 103
           I+P+++T   + KACA          +Y QMIH + +K +P      V T  V+  ++  
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVY-QMIHEYNIKGTPE-----VYTIAVNSCSQKG 628

Query: 104 RLDCAYKLFDKMPDRDVAS----WNAMI--VGFAQMGFLEKVLCLFYNMRLVGIQADFVT 157
             D A  ++D M  + V      ++A++   G A    L+K   +  + R  GI+   V+
Sbjct: 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD--LDKAFEILQDARKQGIKLGTVS 686

Query: 158 VMGLTQAAIHAKH----LSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVF 213
              L  A  +AK+    L L + + S    I +   VS  N  I+A  + N L  A  V 
Sbjct: 687 YSSLMGACSNAKNWKKALELYEDIKS----IKLRPTVSTMNALITALCEGNQLPKALEVL 742

Query: 214 RGIEE-GLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSC 268
             ++  GL    ++++ ++      D  D  L+       DG +P++     +   C
Sbjct: 743 SEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 223 VVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSC 268
           VV++N++I G     K +++L  +  M   G +P+V T   L+   
Sbjct: 3   VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.4 bits (88), Expect = 8e-04
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 88  DIFVQTTMVDMYAKCDRLDCAYKLFDKMPDR----DVASWNAMIVGFAQ 132
           D+    T++D Y K  +++ A KLF++M  R    +V +++ +I G  +
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 7/34 (20%), Positives = 16/34 (47%)

Query: 425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP 458
           + ++  ++   A  G+   AL +  +M    L+P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 35.8 bits (84), Expect = 0.003
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 119 DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVT 157
           DV ++N +I G+ + G +E+ L LF  M+  GI+ +  T
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	615
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.94
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.91
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.87
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.84
PRK14574	822	hmsH outer membrane protein; Provisional	99.83
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.82
PRK14574	822	hmsH outer membrane protein; Provisional	99.82
KOG2003	840	consensus TPR repeat-containing protein [General f	99.8
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.79
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.79
KOG2076	895	consensus RNA polymerase III transcription factor	99.78
KOG2076	895	consensus RNA polymerase III transcription factor	99.77
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.77
KOG2003	840	consensus TPR repeat-containing protein [General f	99.75
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.68
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.68
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.65
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.63
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.62
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.61
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.6
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.6
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.59
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.58
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.58
KOG1126	638	consensus DNA-binding cell division cycle control	99.58
KOG1126	638	consensus DNA-binding cell division cycle control	99.57
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.57
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.56
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.56
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.54
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.53
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.51
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.51
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.5
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.48
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.47
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.46
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.45
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.45
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.44
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.42
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.39
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.38
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.38
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.36
PRK12370	553	invasion protein regulator; Provisional	99.36
KOG1129	478	consensus TPR repeat-containing protein [General f	99.34
PRK11189	296	lipoprotein NlpI; Provisional	99.33
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.33
KOG1129	478	consensus TPR repeat-containing protein [General f	99.33
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.33
PRK12370	553	invasion protein regulator; Provisional	99.32
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.31
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.29
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.29
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.28
PF13041	50	PPR_2: PPR repeat family	99.25
PRK11189	296	lipoprotein NlpI; Provisional	99.21
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.21
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.2
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.18
PF13041	50	PPR_2: PPR repeat family	99.17
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.14
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.13
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.13
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.13
KOG1125	579	consensus TPR repeat-containing protein [General f	99.07
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.07
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.06
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.06
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.05
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.04
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.03
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.03
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.02
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.01
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.01
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.0
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.0
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.99
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.99
PRK15359	144	type III secretion system chaperone protein SscB;	98.93
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.93
PRK04841	903	transcriptional regulator MalT; Provisional	98.9
PRK15359	144	type III secretion system chaperone protein SscB;	98.86
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.85
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.8
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.79
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.78
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.76
PLN02789	320	farnesyltranstransferase	98.75
PRK04841	903	transcriptional regulator MalT; Provisional	98.72
KOG1125	579	consensus TPR repeat-containing protein [General f	98.72
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.71
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.71
PLN02789	320	farnesyltranstransferase	98.7
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.7
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.69
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.69
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.66
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.66
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.65
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.6
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.6
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.59
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.56
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.53
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.53
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.49
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.46
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.46
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.45
PF12854	34	PPR_1: PPR repeat	98.43
PF12854	34	PPR_1: PPR repeat	98.35
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.35
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.33
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.32
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.32
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.32
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.32
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.31
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.27
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.25
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.23
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.23
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.22
KOG0553	304	consensus TPR repeat-containing protein [General f	98.22
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.2
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.19
KOG0553	304	consensus TPR repeat-containing protein [General f	98.19
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.18
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.17
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.15
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.13
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.1
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.1
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.1
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.05
PF13371	73	TPR_9: Tetratricopeptide repeat	98.04
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.04
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.02
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.02
PRK15331	165	chaperone protein SicA; Provisional	97.99
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.98
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.95
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.95
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.95
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.94
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.92
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.91
PF13431	34	TPR_17: Tetratricopeptide repeat	97.91
PRK10803	263	tol-pal system protein YbgF; Provisional	97.85
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.8
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.78
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.77
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.74
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.72
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.71
PF12688	120	TPR_5: Tetratrico peptide repeat	97.71
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.69
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.66
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.66
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.66
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.65
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.65
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.64
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.61
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.6
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.56
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.55
PF13428	44	TPR_14: Tetratricopeptide repeat	97.52
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.49
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.49
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.49
PF13371	73	TPR_9: Tetratricopeptide repeat	97.46
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.45
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.45
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.44
PRK10803	263	tol-pal system protein YbgF; Provisional	97.43
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.43
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.42
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.4
PF12688	120	TPR_5: Tetratrico peptide repeat	97.38
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.35
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.34
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.33
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.3
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.23
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.22
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.2
PF13512	142	TPR_18: Tetratricopeptide repeat	97.18
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.17
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.17
PRK11906	458	transcriptional regulator; Provisional	97.08
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.06
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.98
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.97
KOG1258	577	consensus mRNA processing protein [RNA processing	96.97
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.96
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.94
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.94
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.87
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.83
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.82
KOG4555	175	consensus TPR repeat-containing protein [Function	96.82
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.81
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.79
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.78
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.71
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.69
PRK15331	165	chaperone protein SicA; Provisional	96.68
KOG4234	271	consensus TPR repeat-containing protein [General f	96.55
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.51
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.46
PRK11906	458	transcriptional regulator; Provisional	96.44
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.43
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.41
PRK11619	644	lytic murein transglycosylase; Provisional	96.37
KOG1585	308	consensus Protein required for fusion of vesicles	96.36
PF13512	142	TPR_18: Tetratricopeptide repeat	96.31
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.23
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.19
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.14
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.05
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.05
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.04
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.0
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.97
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.91
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.85
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.85
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.76
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.7
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.65
KOG3941	406	consensus Intermediate in Toll signal transduction	95.58
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.53
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.48
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.4
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.39
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.38
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.37
KOG4555	175	consensus TPR repeat-containing protein [Function	95.35
PF13428	44	TPR_14: Tetratricopeptide repeat	95.33
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.25
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.13
KOG3941	406	consensus Intermediate in Toll signal transduction	95.12
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.0
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	94.98
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.81
KOG4648	536	consensus Uncharacterized conserved protein, conta	94.76
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.72
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.6
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.58
KOG4234	271	consensus TPR repeat-containing protein [General f	94.48
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.21
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.15
PRK09687	280	putative lyase; Provisional	94.11
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.09
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.05
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.05
KOG1585	308	consensus Protein required for fusion of vesicles	94.05
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.88
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.86
KOG4648	536	consensus Uncharacterized conserved protein, conta	93.81
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	93.8
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.47
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.44
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.31
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.3
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	93.29
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.25
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	93.18
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	93.0
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.95
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	92.88
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.85
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	92.72
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.7
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.63
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	92.6
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	92.48
KOG1586	288	consensus Protein required for fusion of vesicles	92.42
KOG1258	577	consensus mRNA processing protein [RNA processing	92.41
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.33
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.28
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.19
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.07
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.06
COG3947	361	Response regulator containing CheY-like receiver a	91.78
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.56
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.32
PRK10941	269	hypothetical protein; Provisional	91.19
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.16
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	91.12
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	90.72
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.58
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	90.57
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.52
KOG3364	149	consensus Membrane protein involved in organellar	90.4
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.04
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	89.83
KOG1586	288	consensus Protein required for fusion of vesicles	89.61
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.5
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	89.24
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	88.87
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	88.78
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	88.78
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.74
COG1747	711	Uncharacterized N-terminal domain of the transcrip	88.62
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	88.49
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	88.46
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	88.33
KOG4570	418	consensus Uncharacterized conserved protein [Funct	88.19
PRK11619	644	lytic murein transglycosylase; Provisional	87.8
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	87.54
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.92
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.89
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	86.87
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.86
PF13431	34	TPR_17: Tetratricopeptide repeat	86.85
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	86.71
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.7
KOG1550	552	consensus Extracellular protein SEL-1 and related	86.62
KOG4570	418	consensus Uncharacterized conserved protein [Funct	86.44
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	86.15
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.98
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	85.97
KOG4507	886	consensus Uncharacterized conserved protein, conta	85.81
PRK09687	280	putative lyase; Provisional	85.74
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	85.37
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	85.3
KOG1550	552	consensus Extracellular protein SEL-1 and related	85.28
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	85.17
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	84.78
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.43
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	84.03
KOG2422	665	consensus Uncharacterized conserved protein [Funct	83.24
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.6
COG5159	421	RPN6 26S proteasome regulatory complex component [	82.41
KOG4507	886	consensus Uncharacterized conserved protein, conta	82.38
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	82.22
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	82.2
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	81.85
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	81.11
COG4976	287	Predicted methyltransferase (contains TPR repeat)	81.11

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=7.4e-92  Score=753.70  Aligned_cols=606  Identities=35%  Similarity=0.621  Sum_probs=597.8

Q ss_pred             CcchhhhhccCCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcC
Q 036661            5 SLPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSP   84 (615)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~   84 (615)
                      .+.++|+.|+.|+.. +||.+|.+|.+.|++++|+++|++|...|+.||..||+.++.+|+..+++..+.+++..+.+.|
T Consensus       139 ~A~~~f~~m~~~d~~-~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g  217 (857)
T PLN03077        139 HAWYVFGKMPERDLF-SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG  217 (857)
T ss_pred             HHHHHHhcCCCCCee-EHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC
Confidence            467899999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHH
Q 036661           85 FWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQA  164 (615)
Q Consensus        85 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  164 (615)
                      +.||..++|.|+.+|++.|++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus       218 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a  297 (857)
T PLN03077        218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA  297 (857)
T ss_pred             CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHH
Q 036661          165 AIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLN  244 (615)
Q Consensus       165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  244 (615)
                      |+..|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.  .|+..+||.+|.+|.+.|++++|++
T Consensus       298 ~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~  375 (857)
T PLN03077        298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALE  375 (857)
T ss_pred             HHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998  7999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc
Q 036661          245 FYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTR  324 (615)
Q Consensus       245 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  324 (615)
                      +|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|.
T Consensus       376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~  455 (857)
T PLN03077        376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV  455 (857)
T ss_pred             HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 036661          325 VSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY  404 (615)
Q Consensus       325 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (615)
                      .+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+.+.+.+++..+.+.|+.++..++++|+++|
T Consensus       456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y  534 (857)
T PLN03077        456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY  534 (857)
T ss_pred             eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence            9999999999999999999999999986 599999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHH
Q 036661          405 SKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFN  484 (615)
Q Consensus       405 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  484 (615)
                      +++|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+
T Consensus       535 ~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~  613 (857)
T PLN03077        535 VRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH  613 (857)
T ss_pred             HHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHH
Confidence            9999999999999999 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661          485 LMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP  564 (615)
Q Consensus       485 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  564 (615)
                      .|.+.+++.|+..+|+.++++|.+.|++++|.+++++|+.+|+..+|..++.+|..+|+.+.++...+++++++|+++..
T Consensus       614 ~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~  693 (857)
T PLN03077        614 SMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY  693 (857)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence            99977899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhHHHHHHccCChHHHHHHHHHHHhcCcccCCceeEEEecCeEEEEecCC
Q 036661          565 YVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGKTCTFTVED  615 (615)
Q Consensus       565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  615 (615)
                      |..++++|...|+|++|.++.+.|.++|++++||+|||.+++.+|.|.+||
T Consensus       694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d  744 (857)
T PLN03077        694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDD  744 (857)
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCC
Confidence            999999999999999999999999999999999999999999999999998

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.9e-77  Score=642.48  Aligned_cols=574  Identities=30%  Similarity=0.474  Sum_probs=542.7

Q ss_pred             CCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHH
Q 036661           15 RSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTT   94 (615)
Q Consensus        15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   94 (615)
                      .++.. ++|.++.++++.|++++|+.+|+.|.+.|++|+..+|..++.+|.+.+..+.+.+++..+.+.+..++...+|.
T Consensus        48 ~~~~~-~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~  126 (857)
T PLN03077         48 SSSTH-DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA  126 (857)
T ss_pred             ccchh-hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence            34455 79999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHH
Q 036661           95 MVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLL  174 (615)
Q Consensus        95 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  174 (615)
                      ++..|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+
T Consensus       127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~  206 (857)
T PLN03077        127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG  206 (857)
T ss_pred             HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCC
Q 036661          175 KSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGF  254 (615)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  254 (615)
                      .+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|+  .|+..+||.+|.+|++.|++++|+++|.+|...|+
T Consensus       207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~--~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~  284 (857)
T PLN03077        207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP--RRDCISWNAMISGYFENGECLEGLELFFTMRELSV  284 (857)
T ss_pred             HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC--CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999  79999999999999999999999999999999999


Q ss_pred             CCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHH
Q 036661          255 RPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGY  334 (615)
Q Consensus       255 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~  334 (615)
                      .||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|..+|..+|+.++.+|
T Consensus       285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~  364 (857)
T PLN03077        285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY  364 (857)
T ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 036661          335 AQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR  414 (615)
Q Consensus       335 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  414 (615)
                      ++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+.+|++.|++++|.
T Consensus       365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~  444 (857)
T PLN03077        365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL  444 (857)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC
Q 036661          415 ELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP  494 (615)
Q Consensus       415 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  494 (615)
                      ++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.+. |+.+
T Consensus       445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~  522 (857)
T PLN03077        445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGF  522 (857)
T ss_pred             HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCc
Confidence            999999999999999999999999999999999999986 58999999999999999999999999999999865 8888


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc--cCCCCCCChHhHHHHH
Q 036661          495 ELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE--LEPHSAAPYVEMANIY  572 (615)
Q Consensus       495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~  572 (615)
                      +..+++.|+++|.+.|++++|.++|+++  .||..+|+.++.+|.++|+.++|.++|+++.+  ..|+ ..+|..+..+|
T Consensus       523 ~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~  599 (857)
T PLN03077        523 DGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCAC  599 (857)
T ss_pred             cceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHH
Confidence            8888888888888888888888888887  67888888888888888888888888888776  3455 66777777888


Q ss_pred             HccCChHHHHHHHHHHH-hcCcccC
Q 036661          573 ALGGRWDGVANLRTMMK-RNQVKKF  596 (615)
Q Consensus       573 ~~~g~~~~A~~~~~~~~-~~~~~~~  596 (615)
                      .+.|++++|.++|+.|. +.|+.++
T Consensus       600 ~~~g~v~ea~~~f~~M~~~~gi~P~  624 (857)
T PLN03077        600 SRSGMVTQGLEYFHSMEEKYSITPN  624 (857)
T ss_pred             hhcChHHHHHHHHHHHHHHhCCCCc
Confidence            88888888888888887 4566554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.2e-74  Score=601.92  Aligned_cols=496  Identities=32%  Similarity=0.535  Sum_probs=487.9

Q ss_pred             CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcC-CcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHH
Q 036661          118 RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVG-IQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTW  196 (615)
Q Consensus       118 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  196 (615)
                      ++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L  164 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV  164 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            567799999999999999999999999999865 7899999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhh
Q 036661          197 ISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQ  276 (615)
Q Consensus       197 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  276 (615)
                      +.+|++.|+++.|.++|++|.  .|+..+||.++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|...|..+.
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~--~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~  242 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMP--ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA  242 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCC--CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence            999999999999999999999  799999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036661          277 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEV  356 (615)
Q Consensus       277 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  356 (615)
                      +.+++..+.+.|+.+|..+++.|+++|++.|++++|.++|+.|.++|..+||.++.+|++.|++++|+++|++|.+.|+.
T Consensus       243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~  322 (697)
T PLN03081        243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS  322 (697)
T ss_pred             HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHH
Q 036661          357 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCA  436 (615)
Q Consensus       357 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~  436 (615)
                      ||..||+.++.+|++.|+++.|.+++..|.+.|++|+..+++.|+.+|++.|++++|.++|++|.++|..+||.++.+|+
T Consensus       323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~  402 (697)
T PLN03081        323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG  402 (697)
T ss_pred             CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036661          437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL  516 (615)
Q Consensus       437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  516 (615)
                      +.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+++.|+..+|+.++++|.+.|++++|.
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcccC
Q 036661          517 DFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKF  596 (615)
Q Consensus       517 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  596 (615)
                      +++++++..|+..+|..++.+|..+|+++.|+.+++++++++|++...|..++++|.+.|+|++|.+++++|.++|+.+.
T Consensus       483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~  562 (697)
T PLN03081        483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH  562 (697)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecCeEEEEecCC
Q 036661          597 PGQSLVHINGKTCTFTVED  615 (615)
Q Consensus       597 ~~~~~~~~~~~~~~~~~~~  615 (615)
                      ||+||+.+++.+|.|.+||
T Consensus       563 ~g~s~i~~~~~~~~f~~~d  581 (697)
T PLN03081        563 PACTWIEVKKQDHSFFSGD  581 (697)
T ss_pred             CCeeEEEECCeEEEEccCC
Confidence            9999999999999999997

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=9.6e-67  Score=546.43  Aligned_cols=472  Identities=25%  Similarity=0.397  Sum_probs=456.6

Q ss_pred             CchhcHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHH
Q 036661           17 STINQWNSQIREAVDKNEAHKALLLFRRMKKND-IEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTM   95 (615)
Q Consensus        17 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l   95 (615)
                      +.. +|+.+|..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+++.+
T Consensus        86 ~~~-~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L  164 (697)
T PLN03081         86 SGV-SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV  164 (697)
T ss_pred             Cce-eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            344 89999999999999999999999998764 7899999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHH
Q 036661           96 VDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK  175 (615)
Q Consensus        96 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  175 (615)
                      +..|++.|++++|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|+..|..+.+.
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~  244 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ  244 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCC
Q 036661          176 SVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFR  255 (615)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  255 (615)
                      +++..+.+.|+.||..+++.|+++|++.|++++|.++|+.|.  .++..+||.+|.+|++.|++++|+++|++|.+.|+.
T Consensus       245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~  322 (697)
T PLN03081        245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS  322 (697)
T ss_pred             HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999  789999999999999999999999999999999999


Q ss_pred             CCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHH
Q 036661          256 PDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYA  335 (615)
Q Consensus       256 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~  335 (615)
                      ||..||+.++.+|++.|.++.|.+++..+.+.|++|+..+++.|+++|++.|++++|.++|+.|.++|..+||.+|.+|+
T Consensus       323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~  402 (697)
T PLN03081        323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG  402 (697)
T ss_pred             CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHh-cCCCCchHHHHHHHHHHHhcCChHHHH
Q 036661          336 QKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACS-GGLKDNVMVCNALIDMYSKCGSIGDAR  414 (615)
Q Consensus       336 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~  414 (615)
                      +.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999986 799999999999999999999999999


Q ss_pred             HHHhcCCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCC
Q 036661          415 ELFYALPE-KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV  492 (615)
Q Consensus       415 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  492 (615)
                      ++++++.. |+..+|++|+.+|...|+++.|..+++++.+.  .|+ ..+|..++..|++.|++++|.++++.|.+. |+
T Consensus       483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~  559 (697)
T PLN03081        483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GL  559 (697)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Confidence            99999875 89999999999999999999999999999764  564 579999999999999999999999999966 76


Q ss_pred             CC
Q 036661          493 NP  494 (615)
Q Consensus       493 ~~  494 (615)
                      .+
T Consensus       560 ~k  561 (697)
T PLN03081        560 SM  561 (697)
T ss_pred             cc
Confidence            53

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.3e-64  Score=529.50  Aligned_cols=505  Identities=15%  Similarity=0.162  Sum_probs=453.2

Q ss_pred             CCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCC-CCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHH
Q 036661           50 IEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPF-WSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIV  128 (615)
Q Consensus        50 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~  128 (615)
                      ..++...|..++..+.+.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.
T Consensus       366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~  445 (1060)
T PLN03218        366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS  445 (1060)
T ss_pred             CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            445677888999999999999999999999999885 5677788889999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHH
Q 036661          129 GFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKM  208 (615)
Q Consensus       129 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (615)
                      +|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.+++++|.+.|+.||..+|+.++.+|++.|++++
T Consensus       446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccC--CCCcchHHHHHHHHhcCCChhhHHHHHHHHHH--CCCCCCHHhHHHHHHhccCchhhhhhhHHHHHH
Q 036661          209 AELVFRGIEEG--LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIY--DGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHG  284 (615)
Q Consensus       209 A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  284 (615)
                      |.++|+.|...  .||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|+++.|..+|+.|
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999765  78999999999999999999999999999976  578999999999999999999999999999999


Q ss_pred             HHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc----CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 036661          285 IHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM----CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV  360 (615)
Q Consensus       285 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  360 (615)
                      .+.|++|+..+|+.++.+|++.|++++|.++|++|    ..||..+|+.++.+|++.|++++|.+++++|.+.|+.||..
T Consensus       606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~  685 (1060)
T PLN03218        606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV  685 (1060)
T ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence            99999999999999999999999999999999999    46788899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC----CChHHHHHHHHHHH
Q 036661          361 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE----KTVVSWTTMIAGCA  436 (615)
Q Consensus       361 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~  436 (615)
                      +|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|..    ||..+|+.++.+|+
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~  765 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE  765 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998864    89999999999999


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----c-------------------CchHHHHHHHHHHHHhhCCC
Q 036661          437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH----A-------------------GFLEKGWGYFNLMTKVYQVN  493 (615)
Q Consensus       437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~  493 (615)
                      +.|++++|.+++++|.+.|+.||..+|+.++..|.+    .                   +..+.|..+|++|.+. |+.
T Consensus       766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~  844 (1060)
T PLN03218        766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTL  844 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCC
Confidence            999999999999999999999999999998865432    1                   1235688888888865 888


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661          494 PELNHYSCMADLLGRKGKLKEALDFVQSMP---IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFEL  557 (615)
Q Consensus       494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  557 (615)
                      ||..+|+.++.++.+.+....+..+++.+.   ..|+..+|+.++.++.+.  .++|..+++++.+.
T Consensus       845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~  909 (1060)
T PLN03218        845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASL  909 (1060)
T ss_pred             CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHc
Confidence            888888888877778888888888888775   455677888888876322  35788888888764

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.3e-64  Score=531.28  Aligned_cols=496  Identities=14%  Similarity=0.157  Sum_probs=408.0

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHh
Q 036661           21 QWNSQIREAVDKNEAHKALLLFRRMKKNDI-EPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMY   99 (615)
Q Consensus        21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (615)
                      .|..++..+++.|++++|+++|+.|.+.|+ .|+..+++.++..|.+.|..++|..++..|..    |+..+|+.++.+|
T Consensus       372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~  447 (1060)
T PLN03218        372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC  447 (1060)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence            678888888888888888888888888775 45666677778888888888888888877764    7888888888888


Q ss_pred             hcCCChhHHHHhhccCCC----CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHH
Q 036661          100 AKCDRLDCAYKLFDKMPD----RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK  175 (615)
Q Consensus       100 ~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  175 (615)
                      ++.|+++.|.++|+.|.+    ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.
T Consensus       448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl  527 (1060)
T PLN03218        448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF  527 (1060)
T ss_pred             HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence            888888888888888763    6778888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC----CCCcchHHHHHHHHhcCCChhhHHHHHHHHHH
Q 036661          176 SVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG----LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIY  251 (615)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  251 (615)
                      ++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|...    .|+..+|+.+|.+|++.|++++|.++|++|.+
T Consensus       528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e  607 (1060)
T PLN03218        528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE  607 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888887541    67788888888888888888888888888888


Q ss_pred             CCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc----CCCCcccH
Q 036661          252 DGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM----CDRTRVSW  327 (615)
Q Consensus       252 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~  327 (615)
                      .|+.|+..+|+.++.+|++.|+++.|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|    ..+|..+|
T Consensus       608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty  687 (1060)
T PLN03218        608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY  687 (1060)
T ss_pred             cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888887    35677788


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 036661          328 TAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC  407 (615)
Q Consensus       328 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  407 (615)
                      +.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.
T Consensus       688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~  767 (1060)
T PLN03218        688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK  767 (1060)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CChHHHHHHHhcCCC----CChHHHHHHHHHHHh-----------------------cCChHHHHHHHHHHHHcCCCCCH
Q 036661          408 GSIGDARELFYALPE----KTVVSWTTMIAGCAL-----------------------NGEFVEALDLFHQMMELDLRPNR  460 (615)
Q Consensus       408 g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~~~~~p~~  460 (615)
                      |+++.|.+++++|.+    ||..+|+.++..|.+                       .+..+.|..+|++|.+.|+.||.
T Consensus       768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~  847 (1060)
T PLN03218        768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM  847 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence            888888888887765    677788887755432                       12346799999999999999999


Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      .||+.++.++...+....+..+++.+... +..|+..+|+.+++++.+.  .++|+.++++|.
T Consensus       848 ~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~  907 (1060)
T PLN03218        848 EVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA  907 (1060)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence            99999998888888999888888888644 7788899999999988432  368999999985

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2.6e-36  Score=333.42  Aligned_cols=558  Identities=10%  Similarity=0.034  Sum_probs=262.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhc
Q 036661           22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAK  101 (615)
Q Consensus        22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (615)
                      +..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|...+..+.... +.+...+..+...+.+
T Consensus       298 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  375 (899)
T TIGR02917       298 LLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLA  375 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            33444455556666666666666555322 133344455555555566666666655555443 3344455555555555


Q ss_pred             CCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHH
Q 036661          102 CDRLDCAYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVH  178 (615)
Q Consensus       102 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  178 (615)
                      .|++++|.+.|+++.+   .+...+..+...+...|++++|.+.++.+.+.... .......++..+...|+++.|.+++
T Consensus       376 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~  454 (899)
T TIGR02917       376 LGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAA  454 (899)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHH
Confidence            5666666655555432   13334445555555555555555555555443211 1222333444444555555555555


Q ss_pred             HHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCC
Q 036661          179 SFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPD  257 (615)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  257 (615)
                      +.+... .+++..++..+...+...|++++|...|+++.+..| +...+..+...+...|++++|.+.++++...+ +.+
T Consensus       455 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~  532 (899)
T TIGR02917       455 KKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKN  532 (899)
T ss_pred             HHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCc
Confidence            555442 223344455555555555555555555555443322 23334444445555555555555555554432 123


Q ss_pred             HHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHH
Q 036661          258 VTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC---DRTRVSWTAMISGY  334 (615)
Q Consensus       258 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~  334 (615)
                      ..++..+...+...|+.+.|...+..+.+.+ +.+...+..++..|...|++++|..+++.+.   +.+...|..+...+
T Consensus       533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  611 (899)
T TIGR02917       533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ  611 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            3444444444444555555555555544433 2233344444455555555555555554441   22333444455555


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 036661          335 AQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR  414 (615)
Q Consensus       335 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  414 (615)
                      ...|++++|...|+++.+.. +.+...+..+...+...|+++.|..+++.+.+.. +.+...+..++..+...|++++|.
T Consensus       612 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  689 (899)
T TIGR02917       612 LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAK  689 (899)
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence            55555555555555544432 2233344444444444555555555555444432 333444444444455555555555


Q ss_pred             HHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhC
Q 036661          415 ELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ  491 (615)
Q Consensus       415 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  491 (615)
                      ++++.+..   .+...+..+...+...|++++|...++++...  .|+..++..+..++.+.|++++|.+.++.+.+  .
T Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~  765 (899)
T TIGR02917       690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--T  765 (899)
T ss_pred             HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence            55444433   23334444444444455555555555544443  23333344444444444455555444444443  1


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661          492 VNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA  569 (615)
Q Consensus       492 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  569 (615)
                      .+.+...+..++..|...|++++|.+.|+++.  .+++...+..++..+...|+ .+|+..++++++..|+++..+..++
T Consensus       766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~  844 (899)
T TIGR02917       766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLG  844 (899)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            22333444444444444455555544444443  22233344444444444444 4444444444444444444444444


Q ss_pred             HHHHccCChHHHHHHHHHHHhcC
Q 036661          570 NIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       570 ~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      .+|...|++++|.++++++.+.+
T Consensus       845 ~~~~~~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       845 WLLVEKGEADRALPLLRKAVNIA  867 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC
Confidence            44444444444444444444433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.1e-35  Score=328.37  Aligned_cols=558  Identities=9%  Similarity=0.001  Sum_probs=468.8

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhh
Q 036661           21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYA  100 (615)
Q Consensus        21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (615)
                      .+..+...+.+.|++++|...++.+.+.++ .+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+.
T Consensus       331 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  408 (899)
T TIGR02917       331 ARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKL  408 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            677888899999999999999999987643 366778888888999999999999999988765 445667788888889


Q ss_pred             cCCChhHHHHhhccCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHH
Q 036661          101 KCDRLDCAYKLFDKMPDR---DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSV  177 (615)
Q Consensus       101 ~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  177 (615)
                      ..|++++|.+.|+.+.+.   +...+..++..+.+.|++++|.++++.+... .+++..++..+...+...|+++.|.+.
T Consensus       409 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~  487 (899)
T TIGR02917       409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREA  487 (899)
T ss_pred             hCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999887642   3456667788899999999999999998875 345677888888999999999999999


Q ss_pred             HHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCC-CCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCC
Q 036661          178 HSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGL-RTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRP  256 (615)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  256 (615)
                      ++.+.+.. +.+...+..+...+...|++++|.+.|+.+.... .+..++..+...+.+.|+.++|...++++...+ +.
T Consensus       488 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~  565 (899)
T TIGR02917       488 FEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQ  565 (899)
T ss_pred             HHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cc
Confidence            99988754 3355677888889999999999999999887653 467788888899999999999999999988764 34


Q ss_pred             CHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHH
Q 036661          257 DVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC---DRTRVSWTAMISG  333 (615)
Q Consensus       257 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~  333 (615)
                      +...+..+...+...|+.+.|..+++.+.+.. +.+...+..+...+...|++++|...|+.+.   +.+...+..+...
T Consensus       566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  644 (899)
T TIGR02917       566 EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADA  644 (899)
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            56677788888999999999999999987654 5677888999999999999999999998873   3356678888899


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHH
Q 036661          334 YAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDA  413 (615)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  413 (615)
                      +.+.|++++|...++++.... +.+..++..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|
T Consensus       645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A  722 (899)
T TIGR02917       645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA  722 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999988753 4567788888899999999999999999998876 56777788888999999999999


Q ss_pred             HHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhC
Q 036661          414 RELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ  491 (615)
Q Consensus       414 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  491 (615)
                      .+.|+.+..  |+..++..++.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|..+|+++.+.  
T Consensus       723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--  799 (899)
T TIGR02917       723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--  799 (899)
T ss_pred             HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--
Confidence            999998765  555777788899999999999999999998863 556678888888999999999999999999853  


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661          492 VNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA  569 (615)
Q Consensus       492 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  569 (615)
                      .+++...+..++..+...|+ .+|+++++++. ..| +...+..++..+...|++++|...++++++.+|.++.++..++
T Consensus       800 ~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~  878 (899)
T TIGR02917       800 APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLA  878 (899)
T ss_pred             CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence            35567788889999999999 88999999876 333 4557778888889999999999999999999999999999999


Q ss_pred             HHHHccCChHHHHHHHHHHHh
Q 036661          570 NIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       570 ~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      .+|.+.|++++|.+++++|++
T Consensus       879 ~~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       879 LALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHhC
Confidence            999999999999999998863

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.7e-27  Score=262.59  Aligned_cols=568  Identities=11%  Similarity=0.021  Sum_probs=406.5

Q ss_pred             CcchhhhhccCCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccH-----------------HHHHHHHHhc
Q 036661            5 SLPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTF-----------------PFIAKACAKL   67 (615)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~ll~~~~~~   67 (615)
                      ++.+++..-|. ++. .+..++..+.+.|+.++|.+.++++.+..  |+...+                 ..+...+...
T Consensus        50 ~l~kl~~~~p~-~p~-~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~  125 (1157)
T PRK11447         50 SLYRLELIDPN-NPD-VIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATT  125 (1157)
T ss_pred             HHHHHHccCCC-CHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhC
Confidence            34444433333 344 78889999999999999999999999865  333222                 2334467788


Q ss_pred             CCchhHhHHHHHHhhcCCCCChHH-HHHHHHHhhcCCChhHHHHhhccCCC--C-CchhHHHHHHHHHhcCChHHHHHHH
Q 036661           68 SDFLYSQMIHGHIVKSPFWSDIFV-QTTMVDMYAKCDRLDCAYKLFDKMPD--R-DVASWNAMIVGFAQMGFLEKVLCLF  143 (615)
Q Consensus        68 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~  143 (615)
                      |++++|.+.++.+.+.+ +++... ...........|+.++|.+.|+.+.+  | +...+..+...+...|+.++|++.+
T Consensus       126 g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l  204 (1157)
T PRK11447        126 GRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVL  204 (1157)
T ss_pred             CCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            99999999999998765 344322 11112222345899999999999875  3 5567888889999999999999999


Q ss_pred             HHhHHcCC------------------c--------------CChhHH----H-----------------HHHHHHHhcCC
Q 036661          144 YNMRLVGI------------------Q--------------ADFVTV----M-----------------GLTQAAIHAKH  170 (615)
Q Consensus       144 ~~m~~~~~------------------~--------------p~~~~~----~-----------------~ll~~~~~~~~  170 (615)
                      +++.+...                  .              |+...+    .                 ..-..+...|+
T Consensus       205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~  284 (1157)
T PRK11447        205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ  284 (1157)
T ss_pred             HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC
Confidence            98754321                  0              110000    0                 11223445677


Q ss_pred             hhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcc---hHHH------------HHHHHhc
Q 036661          171 LSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVV---SWNS------------IIGGCTY  235 (615)
Q Consensus       171 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~------------li~~~~~  235 (615)
                      +++|...++..++.. +.+..++..+..+|.+.|++++|+..|++..+..|+..   .|..            ....+.+
T Consensus       285 ~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~  363 (1157)
T PRK11447        285 GGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK  363 (1157)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            788888887777653 22566777777888888888888888877665544321   1211            1234567


Q ss_pred             CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 036661          236 GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFL  315 (615)
Q Consensus       236 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  315 (615)
                      .|++++|+..|++..+... .+...+..+...+...|++++|...++.+.+.. +.+...+..+...|. .++.++|..+
T Consensus       364 ~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~  440 (1157)
T PRK11447        364 ANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAF  440 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHH
Confidence            7888888888888777532 344555666677777888888888888877654 334455555666654 4567777777


Q ss_pred             HhccCCCC------------cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHH
Q 036661          316 FDGMCDRT------------RVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDN  383 (615)
Q Consensus       316 ~~~~~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  383 (615)
                      ++.+....            ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|++++|...++
T Consensus       441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~  519 (1157)
T PRK11447        441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMR  519 (1157)
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            77653321            1234455667788999999999999988763 3355667778888999999999999999


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCC----Ch---------HHHHHHHHHHHhcCChHHHHHHHHH
Q 036661          384 YACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK----TV---------VSWTTMIAGCALNGEFVEALDLFHQ  450 (615)
Q Consensus       384 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~~~a~~~~~~  450 (615)
                      .+.+.. +.+...+..+...+...++.++|...++.+...    +.         ..+..+...+...|++++|..+++.
T Consensus       520 ~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~  598 (1157)
T PRK11447        520 RLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ  598 (1157)
T ss_pred             HHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            988754 345555555666677889999999999987642    11         1123456678889999999998872


Q ss_pred             HHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-h
Q 036661          451 MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-A  528 (615)
Q Consensus       451 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~  528 (615)
                           .+++...+..+...+.+.|++++|+..|+++.+.  -+.+...+..++.+|...|++++|.+.++... ..|+ .
T Consensus       599 -----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~  671 (1157)
T PRK11447        599 -----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSL  671 (1157)
T ss_pred             -----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh
Confidence                 2455567788889999999999999999999953  23456788899999999999999999999887 4444 4


Q ss_pred             hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC------ChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          529 GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA------PYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ..+..+..++...|++++|.+.++++++..|+++.      .+..++.++...|++++|++.|++...
T Consensus       672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        672 NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            56677888888999999999999999998876554      566679999999999999999999964

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=1.1e-26  Score=255.99  Aligned_cols=562  Identities=9%  Similarity=-0.031  Sum_probs=398.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHH---------
Q 036661           22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQ---------   92 (615)
Q Consensus        22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------   92 (615)
                      .-..++.+...++.+.|.+.++++....+. ++..+..++..+.+.|+.++|.+.++.+.+.. +.+....         
T Consensus        31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~  108 (1157)
T PRK11447         31 LLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLS  108 (1157)
T ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhc
Confidence            555677889999999999999999986544 67788888999999999999999999999876 3333222         


Q ss_pred             -------HHHHHHhhcCCChhHHHHhhccCCCCCchhHH----HHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHH
Q 036661           93 -------TTMVDMYAKCDRLDCAYKLFDKMPDRDVASWN----AMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL  161 (615)
Q Consensus        93 -------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  161 (615)
                             ..+...+.+.|++++|...|+...+.+.....    .........|+.++|++.++++.+.. +-+...+..+
T Consensus       109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~L  187 (1157)
T PRK11447        109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTL  187 (1157)
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence                   23344678899999999999998753222211    11222234599999999999999863 2245567778


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhcC----------------C----------------Cccch-----------------
Q 036661          162 TQAAIHAKHLSLLKSVHSFGIHIGV----------------D----------------ADVSV-----------------  192 (615)
Q Consensus       162 l~~~~~~~~~~~a~~~~~~~~~~~~----------------~----------------~~~~~-----------------  192 (615)
                      ...+...|+.++|.+.++.+.+...                .                |+...                 
T Consensus       188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d  267 (1157)
T PRK11447        188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD  267 (1157)
T ss_pred             HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence            8888899999999999888754210                0                11000                 


Q ss_pred             ----HHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCH-HhH-----
Q 036661          193 ----CNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDV-TTV-----  261 (615)
Q Consensus       193 ----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~-----  261 (615)
                          .......+...|++++|+..|++..+..| +...+..+...+.+.|++++|+..|++..+....... ..+     
T Consensus       268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~  347 (1157)
T PRK11447        268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK  347 (1157)
T ss_pred             cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence                00113345567788888888877766544 5666777777788888888888888877765422111 111     


Q ss_pred             -------HHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCcccHHHHH
Q 036661          262 -------VSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD---RTRVSWTAMI  331 (615)
Q Consensus       262 -------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll  331 (615)
                             ......+.+.|++++|...++++.+.. +.+...+..+...+...|++++|++.|+++..   .+...+..+.
T Consensus       348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~  426 (1157)
T PRK11447        348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA  426 (1157)
T ss_pred             hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence                   111234556777888888888777764 34555666777778888888888888877632   2334455555


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCC--------CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 036661          332 SGYAQKGDLDEALRLFFAMEAAGEV--------PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM  403 (615)
Q Consensus       332 ~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  403 (615)
                      ..|. .++.++|+..++.+......        .....+..+...+...|++++|...+++..+.. +.+..++..+...
T Consensus       427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~  504 (1157)
T PRK11447        427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD  504 (1157)
T ss_pred             HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            5553 35667777777654332100        011223445556677888888888888888765 4466677788888


Q ss_pred             HHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHhh
Q 036661          404 YSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV---------TFLAVLQACT  471 (615)
Q Consensus       404 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---------~~~~l~~~~~  471 (615)
                      |.+.|++++|...++++..   .++..+..+...+...+++++|+..++.+......++..         .+..+...+.
T Consensus       505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~  584 (1157)
T PRK11447        505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR  584 (1157)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence            8888899888888887644   344555555556677888888888887765432222211         1234456778


Q ss_pred             ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHH
Q 036661          472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEY  549 (615)
Q Consensus       472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~  549 (615)
                      ..|+.++|..+++.      .+++...+..++..+.+.|++++|++.|+++. ..| +...+..++..+...|++++|++
T Consensus       585 ~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~  658 (1157)
T PRK11447        585 DSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA  658 (1157)
T ss_pred             HCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            88999999888772      24455677789999999999999999999987 444 56788889999999999999999


Q ss_pred             HHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661          550 VAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKK  595 (615)
Q Consensus       550 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  595 (615)
                      .++++++..|+++..+..++.++...|++++|.++++++.......
T Consensus       659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~  704 (1157)
T PRK11447        659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ  704 (1157)
T ss_pred             HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence            9999999999999999999999999999999999999998765433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=4.7e-24  Score=224.27  Aligned_cols=539  Identities=10%  Similarity=-0.023  Sum_probs=359.3

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHh
Q 036661           32 KNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKL  111 (615)
Q Consensus        32 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  111 (615)
                      .|++++|+..|+...+..+. +...+..+...|...|+.++|...+++..+.. +.|...+..+ ..+   +++++|..+
T Consensus        57 ~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~  130 (987)
T PRK09782         57 NNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTT  130 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHH
Confidence            37888888888888776544 46677777777888888888888888887765 2333333333 222   777777788


Q ss_pred             hccCCC--C-CchhHHHHHHH--------HHhcCChHHHHHHHHHhHHcCCcCChhHHHHH-HHHHHhcCChhHHHHHHH
Q 036661          112 FDKMPD--R-DVASWNAMIVG--------FAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL-TQAAIHAKHLSLLKSVHS  179 (615)
Q Consensus       112 ~~~~~~--~-~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~  179 (615)
                      ++++.+  | +...+..+...        |.+.   ++|.+.++ .......|+..+.... .+.+...++++.+..++.
T Consensus       131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~  206 (987)
T PRK09782        131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN  206 (987)
T ss_pred             HHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            877764  3 33444444443        4444   44444444 3333334445444444 777777888888888888


Q ss_pred             HHHHhcCCCccchHHHHHHHHHc-cCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCC-CC
Q 036661          180 FGIHIGVDADVSVCNTWISAYAK-CNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFR-PD  257 (615)
Q Consensus       180 ~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~  257 (615)
                      .+.+.+. .+......|..+|.. .++ +.+..+++...  ..+...+..+...+.+.|+.++|.++++++...-.. |+
T Consensus       207 ~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~l--k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~  282 (987)
T PRK09782        207 EARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGI--FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ  282 (987)
T ss_pred             HHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence            8877653 234445666666666 355 66666655322  356667777777788888888888777776543222 33


Q ss_pred             HHhHHHHH------------------------------HhccCchhhhhhhHH---------------------------
Q 036661          258 VTTVVSLL------------------------------SSCVCPEALVQGRLV---------------------------  280 (615)
Q Consensus       258 ~~~~~~ll------------------------------~~~~~~~~~~~a~~~---------------------------  280 (615)
                      ..++..++                              ..+.+.+.++.+.++                           
T Consensus       283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  362 (987)
T PRK09782        283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL  362 (987)
T ss_pred             cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence            33332222                              122222333322222                           


Q ss_pred             --HHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCc----ccHHHHHHHHHhcCC---hhHHHHH---
Q 036661          281 --HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD--RTR----VSWTAMISGYAQKGD---LDEALRL---  346 (615)
Q Consensus       281 --~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~ll~~~~~~~~---~~~a~~~---  346 (615)
                        +..+.+. .+-+......+.....+.|+.++|..+|+...+  ++.    ....-++..|.+.+.   ..++..+   
T Consensus       363 ~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~  441 (987)
T PRK09782        363 RLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP  441 (987)
T ss_pred             HHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence              1111111 122444444455556677889999999988743  222    233466777777665   3333333   


Q ss_pred             -------------------HHHHHHC-CC-CC--CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 036661          347 -------------------FFAMEAA-GE-VP--DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM  403 (615)
Q Consensus       347 -------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  403 (615)
                                         +...... +. ++  +...+..+..++.. ++.++|...+.......  |+......+...
T Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a  518 (987)
T PRK09782        442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ  518 (987)
T ss_pred             cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence                               1111111 11 23  45566666666655 78888988777776554  444444445556


Q ss_pred             HHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHH
Q 036661          404 YSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGW  480 (615)
Q Consensus       404 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~  480 (615)
                      +...|++++|...++++..  ++...+..+..++.+.|++++|...+++..+.+  |+. ..+..+.......|++++|.
T Consensus       519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl  596 (987)
T PRK09782        519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELAL  596 (987)
T ss_pred             HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHH
Confidence            6789999999999987655  445567777888899999999999999999864  443 34444455556779999999


Q ss_pred             HHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661          481 GYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELE  558 (615)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  558 (615)
                      ..+++..   ...|+...+..++.++.+.|++++|...+++.. ..| +...+..+..++...|++++|+..++++++++
T Consensus       597 ~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~  673 (987)
T PRK09782        597 NDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL  673 (987)
T ss_pred             HHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            9999998   446778889999999999999999999999987 555 45577888889999999999999999999999


Q ss_pred             CCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          559 PHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       559 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      |+++..+..++.+|...|++++|+..+++..+..+
T Consensus       674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999987654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=6.9e-23  Score=215.58  Aligned_cols=550  Identities=10%  Similarity=-0.003  Sum_probs=396.2

Q ss_pred             hhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHH
Q 036661           19 INQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDM   98 (615)
Q Consensus        19 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   98 (615)
                      ..++..+.+.|...|++++|...+++..+.+  |+-..|..++..+   +++.+|..+++++.+.. +-+..++..+...
T Consensus        78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~  151 (987)
T PRK09782         78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRS  151 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHH
Confidence            3388999999999999999999999999854  4444444444333   89999999999999986 4445555555555


Q ss_pred             --------hhcCCChhHHHHhhccCCCC--CchhHHH-HHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHh
Q 036661           99 --------YAKCDRLDCAYKLFDKMPDR--DVASWNA-MIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIH  167 (615)
Q Consensus        99 --------~~~~g~~~~a~~~~~~~~~~--~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  167 (615)
                              |.+.+...++++  .....|  +...... +...|.+.|++++|+++++++.+.+.. +..-...+-.++..
T Consensus       152 ~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q  228 (987)
T PRK09782        152 EVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLA  228 (987)
T ss_pred             hhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence                    777766666666  333333  3443444 489999999999999999999997632 33335555556666


Q ss_pred             -cCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC---CCCcchHHH---------------
Q 036661          168 -AKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG---LRTVVSWNS---------------  228 (615)
Q Consensus       168 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~---------------  228 (615)
                       .++ +.+..+++.    .++.+...+..+.+.|.+.|+.++|.+++++++..   .|...+|--               
T Consensus       229 ~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~  303 (987)
T PRK09782        229 GQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN  303 (987)
T ss_pred             hhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc
Confidence             356 666666442    33457888999999999999999999999987754   222222211               


Q ss_pred             ---------------HHHHHhcCCChhhHHHHHH-----------------------------HHHHCCCCCCHHhHHHH
Q 036661          229 ---------------IIGGCTYGDKFDDSLNFYR-----------------------------HMIYDGFRPDVTTVVSL  264 (615)
Q Consensus       229 ---------------li~~~~~~~~~~~a~~~~~-----------------------------~m~~~~~~p~~~~~~~l  264 (615)
                                     .+..+.+.+.++.+.++..                             .|.+. .+-+......+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~  382 (987)
T PRK09782        304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQL  382 (987)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHH
Confidence                           1333445555554444421                             11110 00122222222


Q ss_pred             HHhccCchhhhhhhHHHHHHHHh-c-CCCChhHHHHHHHHHHhcCC---HHHHHHH------------------------
Q 036661          265 LSSCVCPEALVQGRLVHSHGIHY-G-FDLDVSVINTLISMYSKCGD---IDSARFL------------------------  315 (615)
Q Consensus       265 l~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~------------------------  315 (615)
                      .-.....|+.++|.+++...... + -.++.....-++..|.+.+.   ...+..+                        
T Consensus       383 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  462 (987)
T PRK09782        383 TWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCP  462 (987)
T ss_pred             HHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHH
Confidence            22344667888888888887762 1 23344556678888887766   3333222                        


Q ss_pred             -HhccC---CC--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcC
Q 036661          316 -FDGMC---DR--TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGG  389 (615)
Q Consensus       316 -~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  389 (615)
                       +....   ++  +...|..+..++.. ++.++|+..+.+....  .|+......+...+...|+++.|...++.+... 
T Consensus       463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-  538 (987)
T PRK09782        463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-  538 (987)
T ss_pred             HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence             11111   12  44566777777766 7888999988887765  466655445555567899999999999987654 


Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036661          390 LKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV---SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAV  466 (615)
Q Consensus       390 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  466 (615)
                       +|+...+..+..++.+.|++++|...+++....++.   .+..+.......|++++|+..+++..+.  .|+...+..+
T Consensus       539 -~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~L  615 (987)
T PRK09782        539 -DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVAR  615 (987)
T ss_pred             -CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence             344445667788889999999999999887764332   3333334445569999999999999986  6788889999


Q ss_pred             HHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCC
Q 036661          467 LQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRN  543 (615)
Q Consensus       467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~  543 (615)
                      ..++.+.|++++|+..+++...   ..|+ ...+..++.++...|++++|++.+++.. ..| +...+..+..++...|+
T Consensus       616 A~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd  692 (987)
T PRK09782        616 ATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD  692 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            9999999999999999999985   3454 5678889999999999999999999987 445 56688999999999999


Q ss_pred             hhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          544 IEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       544 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +++|+..++++++++|++..+....+++..+..+++.|.+.+++.-.-++
T Consensus       693 ~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        693 MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            99999999999999999999999999999999999999999987765544

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.94  E-value=6.7e-23  Score=191.37  Aligned_cols=451  Identities=12%  Similarity=0.090  Sum_probs=343.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccC
Q 036661          125 AMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCN  204 (615)
Q Consensus       125 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  204 (615)
                      .|..-..+.|++++|++.-...-+.. ..+..+.-.+-..+.+..+.+...+--...++. .+--..+|..+.+.+-..|
T Consensus        53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg  130 (966)
T KOG4626|consen   53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG  130 (966)
T ss_pred             HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence            44445556677777766544433322 111112222222333444444333322222221 1223557777888888888


Q ss_pred             CHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHH-HhccCchhhhhhhHHHH
Q 036661          205 DLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLL-SSCVCPEALVQGRLVHS  282 (615)
Q Consensus       205 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~  282 (615)
                      ++++|...++.+.+..| .+..|..+..++...|+.+.|.+.|.+.++.  .|+.....+-+ ...-..|++++|..-+.
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl  208 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL  208 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence            88888888887776644 5777888888888888888888888887763  36554443322 23334677888887777


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 036661          283 HGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTR---VSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPD-  358 (615)
Q Consensus       283 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-  358 (615)
                      +.++.. +.=..+++.|...+-..|+...|+..|++..+-|+   ..|-.|...|...+.++.|...|.+....  +|+ 
T Consensus       209 kAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~  285 (966)
T KOG4626|consen  209 KAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH  285 (966)
T ss_pred             HHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence            777653 22345678888889999999999999998854433   47888999999999999999999888764  454 


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHH
Q 036661          359 LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGC  435 (615)
Q Consensus       359 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~  435 (615)
                      ...+..+...|...|..+.|...+++..+.. +.-+..|+.|..++-..|++.+|.+.+.+...   ....+.+.|...|
T Consensus       286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~  364 (966)
T KOG4626|consen  286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY  364 (966)
T ss_pred             hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            4677788888999999999999999998865 45567899999999999999999999998776   3456888999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChH
Q 036661          436 ALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLK  513 (615)
Q Consensus       436 ~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  513 (615)
                      ...|.+++|..+|....+.  .|.- ..++.|...|-++|++++|+..+++..   .+.|+ ...++.++..|-..|+.+
T Consensus       365 ~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~  439 (966)
T KOG4626|consen  365 REQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVS  439 (966)
T ss_pred             HHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHH
Confidence            9999999999999999884  6665 578999999999999999999999998   67888 468999999999999999


Q ss_pred             HHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661          514 EALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       514 ~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                      .|.+.+.++. ..|. ......|...|...|+..+|++.|+.++++.|+.|.+|.+++.++.-..+|.+=.+.++++
T Consensus       440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl  516 (966)
T KOG4626|consen  440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL  516 (966)
T ss_pred             HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence            9999999987 6665 4578899999999999999999999999999999999999999988888777654444444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=3.8e-22  Score=186.39  Aligned_cols=420  Identities=13%  Similarity=0.127  Sum_probs=340.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhc-ccCCCCcchHHHHHHHHhcCCCh
Q 036661          161 LTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGI-EEGLRTVVSWNSIIGGCTYGDKF  239 (615)
Q Consensus       161 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~  239 (615)
                      +..-..+.|++.+|++.-...-... +.+......+-..+....+.+.....-... .....-..+|..+...+-..|++
T Consensus        54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~  132 (966)
T KOG4626|consen   54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL  132 (966)
T ss_pred             HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence            3344556788888887665544332 223333444445566666666554333322 22244678899999999999999


Q ss_pred             hhHHHHHHHHHHCCCCC-CHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChh-HHHHHHHHHHhcCCHHHHHHHHh
Q 036661          240 DDSLNFYRHMIYDGFRP-DVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVS-VINTLISMYSKCGDIDSARFLFD  317 (615)
Q Consensus       240 ~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~  317 (615)
                      ++|+.+++.+++..  | ....|..+..++...|+.+.|.+.+.+.++..  |+.. ..+.+....-..|++++|...+.
T Consensus       133 ~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl  208 (966)
T KOG4626|consen  133 QDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL  208 (966)
T ss_pred             HHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence            99999999999853  5 45678889999999999999999999988763  4433 33445566667899999999887


Q ss_pred             ccCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCc
Q 036661          318 GMCD--R-TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPD-LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDN  393 (615)
Q Consensus       318 ~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  393 (615)
                      +...  | =.+.|+.|...+-.+|+...|+..|++....  .|+ ...|..|...|...+.++.|...+....... +..
T Consensus       209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~  285 (966)
T KOG4626|consen  209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH  285 (966)
T ss_pred             HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence            7633  3 3458999999999999999999999999875  344 3577788888888889999988888877654 556


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 036661          394 VMVCNALIDMYSKCGSIGDARELFYALPE--KT-VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQA  469 (615)
Q Consensus       394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~  469 (615)
                      ...+..+...|-.+|.++.|++.+++..+  |+ +..|+.|..++...|+..+|...+.+....  .|+. ...+.|...
T Consensus       286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni  363 (966)
T KOG4626|consen  286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNI  363 (966)
T ss_pred             hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence            77788888889999999999999998876  43 479999999999999999999999999986  5554 688999999


Q ss_pred             hhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhH
Q 036661          470 CTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEI  546 (615)
Q Consensus       470 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~  546 (615)
                      +...|.+++|..+|....   .+.|. ...++.|+..|-.+|++++|+..+++.. +.|. ...+..++..|...|+...
T Consensus       364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~  440 (966)
T KOG4626|consen  364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA  440 (966)
T ss_pred             HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence            999999999999999988   44565 4578889999999999999999999987 7776 4588999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          547 GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       547 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      |.+.+.+++.++|.-++++.+|+.+|...|+..+|++.|+..++-.+
T Consensus       441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP  487 (966)
T KOG4626|consen  441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP  487 (966)
T ss_pred             HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence            99999999999999999999999999999999999999999987654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.91  E-value=4.3e-20  Score=181.94  Aligned_cols=565  Identities=12%  Similarity=0.029  Sum_probs=407.8

Q ss_pred             cHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHH
Q 036661           21 QWNSQIREAVD--KNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDM   98 (615)
Q Consensus        21 ~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~   98 (615)
                      ..-.+.++++.  .+++..|+.+|..+....+.--+.....+-.++.+.++.+.|+..|.+....+ +.++.++-.|.-.
T Consensus       164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~  242 (1018)
T KOG2002|consen  164 ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEV  242 (1018)
T ss_pred             hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHH
Confidence            35566676665  66899999999998775443333344455577789999999999999998765 2223333222222


Q ss_pred             hhcC---CChhHHHHhhccCC---CCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCc--CChhHHHHHHHHHHhcCC
Q 036661           99 YAKC---DRLDCAYKLFDKMP---DRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQ--ADFVTVMGLTQAAIHAKH  170 (615)
Q Consensus        99 ~~~~---g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~  170 (615)
                      -...   ..+..+..++...-   ..|+...+.|..-|.-.|++..++.+.+.+......  .-...|..+.+++-..|+
T Consensus       243 ~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd  322 (1018)
T KOG2002|consen  243 DLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD  322 (1018)
T ss_pred             HHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence            1222   23445555555543   258889999999999999999999999998875411  123458889999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCC-cchHHHHHHHHhcCC----ChhhHHHH
Q 036661          171 LSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRT-VVSWNSIIGGCTYGD----KFDDSLNF  245 (615)
Q Consensus       171 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~----~~~~a~~~  245 (615)
                      +++|...|-+..+.....-...+.-+...|.+.|+++.+...|+.+....|+ ..+...+...|...+    ..+.|..+
T Consensus       323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~  402 (1018)
T KOG2002|consen  323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNV  402 (1018)
T ss_pred             HHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence            9999999988877542222344567889999999999999999999887664 455555556666554    45677777


Q ss_pred             HHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHH----HHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 036661          246 YRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHS----HGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD  321 (615)
Q Consensus       246 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  321 (615)
                      +.+..+.- +.|...|..+...+....-+.. ..++.    .+...+-.+.+...|.+...+...|+++.|...|+....
T Consensus       403 l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~  480 (1018)
T KOG2002|consen  403 LGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG  480 (1018)
T ss_pred             HHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence            77766543 3556677777666655443333 44444    444566678899999999999999999999999987621


Q ss_pred             -------CCcc------cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHhhcccchhhHHHHHHHHHHh
Q 036661          322 -------RTRV------SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV-TVLSMISGCGQSGALELGKWFDNYACS  387 (615)
Q Consensus       322 -------~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~  387 (615)
                             ++..      +--.+...+-..++++.|.+.|..+...  .|.-+ .|..+.......++...|...+.....
T Consensus       481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~  558 (1018)
T KOG2002|consen  481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN  558 (1018)
T ss_pred             hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence                   1221      2223555566678999999999999886  34443 344444333445678888888888877


Q ss_pred             cCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChHHHHHHHHHHHh------------cCChHHHHHHHHH
Q 036661          388 GGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KTVVSWTTMIAGCAL------------NGEFVEALDLFHQ  450 (615)
Q Consensus       388 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~  450 (615)
                      .+ ..++..+..+...+.+...+..|.+-|+.+..     +|+.+.-.|...|.+            .+..++|+++|.+
T Consensus       559 ~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~k  637 (1018)
T KOG2002|consen  559 ID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGK  637 (1018)
T ss_pred             cc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence            54 55566666677788888888888775544332     355555555554443            3456889999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC
Q 036661          451 MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP----IKS  526 (615)
Q Consensus       451 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p  526 (615)
                      ++... +-|...-+.+.-+++..|++.+|..+|....+..  .....+|-.++.+|..+|++..|+++|+...    ...
T Consensus       638 vL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~  714 (1018)
T KOG2002|consen  638 VLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKN  714 (1018)
T ss_pred             HHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            98863 4466777888889999999999999999999753  2345678889999999999999999998875    445


Q ss_pred             ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc-------------------CChHHHHHHHHH
Q 036661          527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG-------------------GRWDGVANLRTM  587 (615)
Q Consensus       527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~  587 (615)
                      +......|..++.+.|.+.+|.+.+.+++...|.++.+.++++-+..+.                   +..+.|.++|..
T Consensus       715 ~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~  794 (1018)
T KOG2002|consen  715 RSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTE  794 (1018)
T ss_pred             CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence            6778899999999999999999999999999999999888887765543                   346778888888


Q ss_pred             HHhcCcc
Q 036661          588 MKRNQVK  594 (615)
Q Consensus       588 ~~~~~~~  594 (615)
                      |.+.+.+
T Consensus       795 ls~~~d~  801 (1018)
T KOG2002|consen  795 LSKNGDK  801 (1018)
T ss_pred             HHhcCCC
Confidence            8776654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.91  E-value=1.3e-20  Score=195.59  Aligned_cols=422  Identities=10%  Similarity=-0.012  Sum_probs=269.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHc
Q 036661          123 WNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAK  202 (615)
Q Consensus       123 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  202 (615)
                      +......+.+.|++++|++.|++..+  +.|+...|..+..++...|+++.|.+.++..++.. +.+...+..+..+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            44556667777777777777777765  45666666666666666677776666666666543 1234455666666666


Q ss_pred             cCCHHHHHHHHHhcccCCCC-cchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHH
Q 036661          203 CNDLKMAELVFRGIEEGLRT-VVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVH  281 (615)
Q Consensus       203 ~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  281 (615)
                      .|++++|...|..+....+. ......++..+..    ..+...........                            
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~----------------------------  254 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK----------------------------  254 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC----------------------------
Confidence            66666666655443321111 1101111111100    11111111111110                            


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCC---cccHHHHHHH---HHhcCChhHHHHHHHHHHHCC-
Q 036661          282 SHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRT---RVSWTAMISG---YAQKGDLDEALRLFFAMEAAG-  354 (615)
Q Consensus       282 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-  354 (615)
                              +.+......+.. |...........-+....+.+   ...+..+...   ....+++++|++.|++..+.+ 
T Consensus       255 --------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~  325 (615)
T TIGR00990       255 --------PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK  325 (615)
T ss_pred             --------CCCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence                    111111111111 111111111111111111111   1111111111   123467888999998888764 


Q ss_pred             CCC-CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHH
Q 036661          355 EVP-DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTT  430 (615)
Q Consensus       355 ~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~  430 (615)
                      ..| ....+..+...+...|+++.|...++...+.. +.....+..+...+...|++++|...|+++.+   .+...|..
T Consensus       326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~  404 (615)
T TIGR00990       326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYH  404 (615)
T ss_pred             CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            223 34456666777778899999999998887764 34466777888888899999999999987655   45678888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 036661          431 MIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG  510 (615)
Q Consensus       431 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  510 (615)
                      +...+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..+++..+.  .+.+...+..++.++...|
T Consensus       405 lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g  481 (615)
T TIGR00990       405 RAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQN  481 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcc
Confidence            9999999999999999999999863 334567778888999999999999999998853  3444678888999999999


Q ss_pred             ChHHHHHHHHhCC-CCCCh-hh-------HHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHH
Q 036661          511 KLKEALDFVQSMP-IKSDA-GI-------WGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGV  581 (615)
Q Consensus       511 ~~~~A~~~~~~~~-~~p~~-~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  581 (615)
                      ++++|.+.|++.. ..|+. ..       +......+...|++++|.+.++++++++|++...+..++.+|.+.|++++|
T Consensus       482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA  561 (615)
T TIGR00990       482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA  561 (615)
T ss_pred             CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            9999999999876 33331 11       111222334469999999999999999999988999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 036661          582 ANLRTMMKRNQ  592 (615)
Q Consensus       582 ~~~~~~~~~~~  592 (615)
                      ++.+++..+..
T Consensus       562 i~~~e~A~~l~  572 (615)
T TIGR00990       562 LKLFERAAELA  572 (615)
T ss_pred             HHHHHHHHHHh
Confidence            99999987643

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.89  E-value=9.7e-19  Score=172.50  Aligned_cols=555  Identities=10%  Similarity=0.016  Sum_probs=399.6

Q ss_pred             HHHhcCC--hhHHHHHHHHHHhCCCCCCcccHHHHHHHH--HhcCCchhHhHHHHHHhhcCC--CCChHHHHHHHHHhhc
Q 036661           28 EAVDKNE--AHKALLLFRRMKKNDIEPNNLTFPFIAKAC--AKLSDFLYSQMIHGHIVKSPF--WSDIFVQTTMVDMYAK  101 (615)
Q Consensus        28 ~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~  101 (615)
                      .|...+.  .+.|...|....+..+ +|  ....+.+++  ...+++..|..+|..++....  .||+.  -.+...+.+
T Consensus       137 ~~l~~~~~~~~~A~a~F~~Vl~~sp-~N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~k  211 (1018)
T KOG2002|consen  137 FLLLEGDKSMDDADAQFHFVLKQSP-DN--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWK  211 (1018)
T ss_pred             hhhhcCCccHHHHHHHHHHHHhhCC-cc--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHh
Confidence            3444444  4899999999987532 23  344455554  456899999999999776543  34443  334566778


Q ss_pred             CCChhHHHHhhccCCCCCchhHHHHHHH---HHhc---CChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHH
Q 036661          102 CDRLDCAYKLFDKMPDRDVASWNAMIVG---FAQM---GFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK  175 (615)
Q Consensus       102 ~g~~~~a~~~~~~~~~~~~~~~~~li~~---~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  175 (615)
                      .|+.+.|+..|....+-|+..-++++..   -...   ..+..++.++...-... .-++...+.|.+.+.-.|++..+.
T Consensus       212 l~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~  290 (1018)
T KOG2002|consen  212 LGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVW  290 (1018)
T ss_pred             ccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHH
Confidence            9999999999999887655444443332   2222   23556666666554432 346677888888999999999999


Q ss_pred             HHHHHHHHhcCC--CccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCc--chHHHHHHHHhcCCChhhHHHHHHHHHH
Q 036661          176 SVHSFGIHIGVD--ADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTV--VSWNSIIGGCTYGDKFDDSLNFYRHMIY  251 (615)
Q Consensus       176 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~  251 (615)
                      .+...+......  .-...|-.+.++|...|++++|..+|.+.....++.  ..+--+...+...|+++.+...|+....
T Consensus       291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k  370 (1018)
T KOG2002|consen  291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK  370 (1018)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence            999988875422  123457888999999999999999998877665554  4445577889999999999999999987


Q ss_pred             CCCCCCHHhHHHHHHhccCch----hhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc--------
Q 036661          252 DGFRPDVTTVVSLLSSCVCPE----ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM--------  319 (615)
Q Consensus       252 ~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------  319 (615)
                      .. +-+..|...+...|...+    ..+.|..++....+.. +.|...|-.+...+...+-+.. +..|...        
T Consensus       371 ~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~  447 (1018)
T KOG2002|consen  371 QL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG  447 (1018)
T ss_pred             hC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC
Confidence            53 233455555555555543    4566666666666554 5677778777777766544322 4444332        


Q ss_pred             CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH------HHHHHHHHhhcccchhhHHHHHHHHHHhcCC
Q 036661          320 CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAA---GEVPDL------VTVLSMISGCGQSGALELGKWFDNYACSGGL  390 (615)
Q Consensus       320 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  390 (615)
                      ....+...|.+...+...|++.+|...|.+....   ...++.      .+-..+....-..++.+.|.+.|..+.+.. 
T Consensus       448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-  526 (1018)
T KOG2002|consen  448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-  526 (1018)
T ss_pred             CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-
Confidence            3346678899999999999999999999987654   122222      233345556667789999999999998754 


Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHH
Q 036661          391 KDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNRVTFLAV  466 (615)
Q Consensus       391 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l  466 (615)
                      +.-+..|-.++......+...+|...++.+..   .++..|..+...+.....+..|.+-|....+.- ..+|..+...|
T Consensus       527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL  606 (1018)
T KOG2002|consen  527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL  606 (1018)
T ss_pred             chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence            33333444444344455778889999987765   677888888889998888888888777665532 24677777777


Q ss_pred             HHHhhc------------cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHH
Q 036661          467 LQACTH------------AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWG  532 (615)
Q Consensus       467 ~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~  532 (615)
                      ...|..            .+..++|+++|.++.+  ..+.+...-+.++-+++..|++.+|..+|.++.  ......+|.
T Consensus       607 GN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~l  684 (1018)
T KOG2002|consen  607 GNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWL  684 (1018)
T ss_pred             hHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceee
Confidence            775543            2456788888888875  345566777789999999999999999999987  333556899


Q ss_pred             HHHHHHHHhCChhHHHHHHHHHhccC--CCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          533 TLLCACKIHRNIEIGEYVAYRLFELE--PHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       533 ~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      .++.+|...|++-.|+++|+..++..  .+++.++..|+.++.+.|+|.+|.+.+.+.....+.
T Consensus       685 Nlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~  748 (1018)
T KOG2002|consen  685 NLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS  748 (1018)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999998743  456889999999999999999999999888876653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=7.1e-19  Score=181.69  Aligned_cols=371  Identities=11%  Similarity=-0.034  Sum_probs=279.1

Q ss_pred             HccCCHHHHHHHHHhcccCCC----CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhh
Q 036661          201 AKCNDLKMAELVFRGIEEGLR----TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQ  276 (615)
Q Consensus       201 ~~~~~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  276 (615)
                      .+..+++...-+|...++..+    +......++..+.+.|++++|+.+++..+.....+ ...+..++.+....|+.+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~   94 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA   94 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence            445566666666665554422    33345566777888889999999888888765433 3334444455667888888


Q ss_pred             hhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036661          277 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAA  353 (615)
Q Consensus       277 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  353 (615)
                      |...++.+.... +.+...+..+...+...|++++|...+++..   +.+...+..+...+...|++++|...++.+...
T Consensus        95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~  173 (656)
T PRK15174         95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE  173 (656)
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence            888888888765 4566778888899999999999999998873   335567888899999999999999999988765


Q ss_pred             CCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHH
Q 036661          354 GEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTT  430 (615)
Q Consensus       354 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~  430 (615)
                      .. .+...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...+++...   .+...+..
T Consensus       174 ~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~  251 (656)
T PRK15174        174 VP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS  251 (656)
T ss_pred             CC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            32 222333233 34678899999999999887765344445555667788899999999999988765   35678888


Q ss_pred             HHHHHHhcCChHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHH
Q 036661          431 MIAGCALNGEFVE----ALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMAD  504 (615)
Q Consensus       431 l~~~~~~~~~~~~----a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~  504 (615)
                      +...+...|++++    |...++++.+.  .|+ ...+..+...+...|++++|...++++...   .|+ ...+..++.
T Consensus       252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~  326 (656)
T PRK15174        252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYAR  326 (656)
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence            9999999999986    79999999986  454 568888999999999999999999998853   344 456777889


Q ss_pred             HHHhcCChHHHHHHHHhCC-CCCChhh-HHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHH
Q 036661          505 LLGRKGKLKEALDFVQSMP-IKSDAGI-WGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVA  582 (615)
Q Consensus       505 ~~~~~g~~~~A~~~~~~~~-~~p~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  582 (615)
                      ++.+.|++++|...++++. ..|+... +..+..++...|+.++|...++++++.+|++.            ...+++|.
T Consensus       327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~  394 (656)
T PRK15174        327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGL  394 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHH
Confidence            9999999999999999887 5666543 34456778889999999999999999999864            34455666


Q ss_pred             HHHHHHHhcC
Q 036661          583 NLRTMMKRNQ  592 (615)
Q Consensus       583 ~~~~~~~~~~  592 (615)
                      ..+.+..+.-
T Consensus       395 ~~~~~~~~~~  404 (656)
T PRK15174        395 LALDGQISAV  404 (656)
T ss_pred             HHHHHHHHhc
Confidence            6666665543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=3.9e-20  Score=182.61  Aligned_cols=292  Identities=14%  Similarity=0.111  Sum_probs=218.0

Q ss_pred             HHHhcCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHhhcccchh
Q 036661          302 MYSKCGDIDSARFLFDGMCDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPD---LVTVLSMISGCGQSGAL  375 (615)
Q Consensus       302 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~  375 (615)
                      .+...|++++|...|.++...   +..++..+...+...|++++|..+++.+...+..++   ...+..+...+...|++
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            445566777777777766322   334566667777777777777777777766432221   23456666777777777


Q ss_pred             hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCC--------hHHHHHHHHHHHhcCChHHHHHH
Q 036661          376 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKT--------VVSWTTMIAGCALNGEFVEALDL  447 (615)
Q Consensus       376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~  447 (615)
                      +.|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+...+        ...+..+...+...|++++|...
T Consensus       124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            77777777776643 4456677777778888888888888777765421        12355677788889999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 036661          448 FHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE--LNHYSCMADLLGRKGKLKEALDFVQSMP-I  524 (615)
Q Consensus       448 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~  524 (615)
                      ++++.+.. +.+...+..+...+.+.|++++|.++++++...   .|+  ...+..++.+|...|++++|.+.++++. .
T Consensus       203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99998863 334567788888999999999999999999853   343  3567888999999999999999999986 6


Q ss_pred             CCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc---cCChHHHHHHHHHHHhcCcccCCce
Q 036661          525 KSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL---GGRWDGVANLRTMMKRNQVKKFPGQ  599 (615)
Q Consensus       525 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~  599 (615)
                      .|+...+..++..+.+.|++++|..+++++++..|+++. +..+...+..   .|+.++|...++++.++++.++|.+
T Consensus       279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~  355 (389)
T PRK11788        279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY  355 (389)
T ss_pred             CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence            677777788889999999999999999999999999764 4444444432   5699999999999999999988863

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.87  E-value=9.8e-19  Score=184.75  Aligned_cols=399  Identities=9%  Similarity=-0.046  Sum_probs=239.9

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHH
Q 036661          155 FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGC  233 (615)
Q Consensus       155 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~  233 (615)
                      ..-..-.+......|+.++|.+++....... +.+...+..+..++...|++++|..+|++.....| +...+..+...+
T Consensus        15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l   93 (765)
T PRK10049         15 NNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL   93 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3334444555556666666666666665421 22333466666666666666666666666554433 344455555666


Q ss_pred             hcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 036661          234 TYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSAR  313 (615)
Q Consensus       234 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  313 (615)
                      ...|++++|+..+++..+..  |+...+..+..++...|+.+.|...++.+.+.. +.+..                   
T Consensus        94 ~~~g~~~eA~~~l~~~l~~~--P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~-------------------  151 (765)
T PRK10049         94 ADAGQYDEALVKAKQLVSGA--PDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQ-------------------  151 (765)
T ss_pred             HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-------------------
Confidence            66666666666666665542  221113333444444444444444444444432 22223                   


Q ss_pred             HHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHhh-----cccchh---hHHH
Q 036661          314 FLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDL------VTVLSMISGC-----GQSGAL---ELGK  379 (615)
Q Consensus       314 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~-----~~~~~~---~~a~  379 (615)
                                  .+..+...+...+..++|++.++....   .|+.      ......+...     ...+++   +.|.
T Consensus       152 ------------~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al  216 (765)
T PRK10049        152 ------------YPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRAL  216 (765)
T ss_pred             ------------HHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHH
Confidence                        333344444444555555544443332   1111      0001111111     122233   5666


Q ss_pred             HHHHHHHhc-CCCCchH-HH----HHHHHHHHhcCChHHHHHHHhcCCCCC---hH-HHHHHHHHHHhcCChHHHHHHHH
Q 036661          380 WFDNYACSG-GLKDNVM-VC----NALIDMYSKCGSIGDARELFYALPEKT---VV-SWTTMIAGCALNGEFVEALDLFH  449 (615)
Q Consensus       380 ~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~  449 (615)
                      ..++.+.+. ...|+.. .+    ...+..+...|++++|+..|+.+...+   +. ....+..+|...|++++|+..|+
T Consensus       217 ~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~  296 (765)
T PRK10049        217 AQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILT  296 (765)
T ss_pred             HHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            666666643 1122211 11    111233456688888888888877632   21 22225677888899999999999


Q ss_pred             HHHHcCCCCC-----HHHHHHHHHHhhccCchHHHHHHHHHHHHhhC----------CCCC---hhHHHHHHHHHHhcCC
Q 036661          450 QMMELDLRPN-----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ----------VNPE---LNHYSCMADLLGRKGK  511 (615)
Q Consensus       450 ~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~  511 (615)
                      ++.+..  |.     ......+..++...|++++|..+++.+.....          -.|+   ...+..++.++...|+
T Consensus       297 ~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~  374 (765)
T PRK10049        297 ELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND  374 (765)
T ss_pred             HHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC
Confidence            887643  32     23455666678888999999999888875310          0122   1244567788889999


Q ss_pred             hHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661          512 LKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       512 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                      +++|+++++++.  .+.+...+..++..+...|++++|++.++++++++|+++..+..++.++.+.|++++|.+.++++.
T Consensus       375 ~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll  454 (765)
T PRK10049        375 LPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV  454 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999876  333556778888888899999999999999999999999999999999999999999999999988


Q ss_pred             hcCc
Q 036661          590 RNQV  593 (615)
Q Consensus       590 ~~~~  593 (615)
                      +..+
T Consensus       455 ~~~P  458 (765)
T PRK10049        455 AREP  458 (765)
T ss_pred             HhCC
Confidence            7654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=4.7e-18  Score=176.49  Aligned_cols=421  Identities=10%  Similarity=-0.071  Sum_probs=274.5

Q ss_pred             HHHHHHHhhcCCChhHHHHhhccCCC--CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcC-ChhHHHHHHHHHHhc
Q 036661           92 QTTMVDMYAKCDRLDCAYKLFDKMPD--RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQA-DFVTVMGLTQAAIHA  168 (615)
Q Consensus        92 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~  168 (615)
                      +......+.+.|++++|+..|+...+  |+...|..+..+|.+.|++++|++.++...+.  .| +...+..+..++...
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence            44667788899999999999999764  77788999999999999999999999999874  45 455788888999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHH
Q 036661          169 KHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRH  248 (615)
Q Consensus       169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  248 (615)
                      |++++|...+......+...+. ....++..+........+...++.-   +++...+..+.. +...........-+..
T Consensus       208 g~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  282 (615)
T TIGR00990       208 GKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETK---PENLPSVTFVGN-YLQSFRPKPRPAGLED  282 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcC---CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence            9999999888766554322121 1122222222211223333333332   223333332222 2221111111111111


Q ss_pred             HHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHH---HHhcCCHHHHHHHHhccCCC---
Q 036661          249 MIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISM---YSKCGDIDSARFLFDGMCDR---  322 (615)
Q Consensus       249 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~---  322 (615)
                      -.+  ..|..                                  ...+..+...   ....+++++|.+.|+.....   
T Consensus       283 ~~~--~~~~~----------------------------------~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~  326 (615)
T TIGR00990       283 SNE--LDEET----------------------------------GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL  326 (615)
T ss_pred             ccc--ccccc----------------------------------ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC
Confidence            100  00100                                  0000000000   02235566666666655321   


Q ss_pred             ---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHH
Q 036661          323 ---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNA  399 (615)
Q Consensus       323 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  399 (615)
                         ....|+.+...+...|++++|+..+++..+.. +-+...|..+...+...|+++.|...++.+.+.. +.+..++..
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~  404 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYH  404 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence               23356666667777778888888877777642 2234466666777777788888888887777654 455677788


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCch
Q 036661          400 LIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFL  476 (615)
Q Consensus       400 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~  476 (615)
                      +...+...|++++|...|++...   .+...+..+..++.+.|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus       405 lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~  483 (615)
T TIGR00990       405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKF  483 (615)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCH
Confidence            88888888888888888887765   345677788888889999999999999988752 33457888888889999999


Q ss_pred             HHHHHHHHHHHHhhCCCCCh-h-------HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhH
Q 036661          477 EKGWGYFNLMTKVYQVNPEL-N-------HYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEI  546 (615)
Q Consensus       477 ~~a~~~~~~~~~~~~~~~~~-~-------~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~  546 (615)
                      ++|++.|++....   .|+. .       .++.....+...|++++|.+++++.. ..|+ ...+..++..+.+.|++++
T Consensus       484 ~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e  560 (615)
T TIGR00990       484 DEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE  560 (615)
T ss_pred             HHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence            9999999988742   3321 1       12222233445689999999998875 4454 3467888899999999999


Q ss_pred             HHHHHHHHhccCCCC
Q 036661          547 GEYVAYRLFELEPHS  561 (615)
Q Consensus       547 A~~~~~~~~~~~p~~  561 (615)
                      |+..+++++++.+..
T Consensus       561 Ai~~~e~A~~l~~~~  575 (615)
T TIGR00990       561 ALKLFERAAELARTE  575 (615)
T ss_pred             HHHHHHHHHHHhccH
Confidence            999999999887753

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.86  E-value=1.6e-18  Score=178.99  Aligned_cols=331  Identities=8%  Similarity=-0.050  Sum_probs=269.1

Q ss_pred             HHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHH
Q 036661          258 VTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGY  334 (615)
Q Consensus       258 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~  334 (615)
                      ......++..+.+.|+.+.|..++......... +......++.+....|++++|...|+.+   .+.+...+..+...+
T Consensus        42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l  120 (656)
T PRK15174         42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL  120 (656)
T ss_pred             ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            334556777888999999999999999887633 3445566667777899999999999998   333556788889999


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 036661          335 AQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR  414 (615)
Q Consensus       335 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  414 (615)
                      ...|++++|...+++..... +.+...+..+...+...|+.+.|...++.+...... +...+..+ ..+...|++++|.
T Consensus       121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~  197 (656)
T PRK15174        121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH  197 (656)
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence            99999999999999998852 445667788888999999999999999988765533 33333333 3478899999999


Q ss_pred             HHHhcCCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHH----HHHHHHHH
Q 036661          415 ELFYALPEK----TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEK----GWGYFNLM  486 (615)
Q Consensus       415 ~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~  486 (615)
                      ..++.+...    +...+..+..++...|++++|+..++++.+.+ +.+...+..+...+...|++++    |...++++
T Consensus       198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A  276 (656)
T PRK15174        198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA  276 (656)
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence            999987652    23344556778889999999999999999874 3345678888999999999986    89999999


Q ss_pred             HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661          487 TKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP  564 (615)
Q Consensus       487 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  564 (615)
                      .+.  .+.+...+..++..+.+.|++++|...++++. ..|+ ...+..+..++...|++++|...++++++.+|+++..
T Consensus       277 l~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~  354 (656)
T PRK15174        277 LQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW  354 (656)
T ss_pred             Hhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence            842  23346688899999999999999999999987 4454 5577788899999999999999999999999998877


Q ss_pred             hHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661          565 YVEMANIYALGGRWDGVANLRTMMKRNQVKK  595 (615)
Q Consensus       565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  595 (615)
                      +..++.++...|++++|++.|+++.+..+..
T Consensus       355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        355 NRYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            7778999999999999999999998876643

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=1.5e-17  Score=175.69  Aligned_cols=412  Identities=10%  Similarity=-0.021  Sum_probs=285.9

Q ss_pred             CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHH
Q 036661          119 DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWIS  198 (615)
Q Consensus       119 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  198 (615)
                      +.....-.+.+....|+.++|++++....... ..+...+..+...+...|++++|.++++..++.. +.+...+..+..
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~   91 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL   91 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            33344455677888999999999999987622 3345568888999999999999999999998863 334667788889


Q ss_pred             HHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCH-HhHHHHHHhccCchhhhh
Q 036661          199 AYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDV-TTVVSLLSSCVCPEALVQ  276 (615)
Q Consensus       199 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~  276 (615)
                      ++...|++++|...++++....| +.. +..+...+...|+.++|+..++++.+..  |+. ..+..+..++...+..+.
T Consensus        92 ~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~  168 (765)
T PRK10049         92 TLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAP  168 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHH
Confidence            99999999999999999887755 444 8888889999999999999999999864  443 333444445555556665


Q ss_pred             hhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHH-----HhcCCh---hHHHHHHH
Q 036661          277 GRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGY-----AQKGDL---DEALRLFF  348 (615)
Q Consensus       277 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~---~~a~~~~~  348 (615)
                      |...++....   .|+..  ..+        ...               ....++...     ...+++   ++|++.++
T Consensus       169 Al~~l~~~~~---~p~~~--~~l--------~~~---------------~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~  220 (765)
T PRK10049        169 ALGAIDDANL---TPAEK--RDL--------EAD---------------AAAELVRLSFMPTRSEKERYAIADRALAQYD  220 (765)
T ss_pred             HHHHHHhCCC---CHHHH--HHH--------HHH---------------HHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence            6555544332   11100  000        000               001111111     111222   56777777


Q ss_pred             HHHHC-CCCCCHH-HHH----HHHHhhcccchhhHHHHHHHHHHhcCCC-CchHHHHHHHHHHHhcCChHHHHHHHhcCC
Q 036661          349 AMEAA-GEVPDLV-TVL----SMISGCGQSGALELGKWFDNYACSGGLK-DNVMVCNALIDMYSKCGSIGDARELFYALP  421 (615)
Q Consensus       349 ~~~~~-~~~~~~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  421 (615)
                      .+.+. ...|+.. .+.    ..+..+...|+.+.|...|+.+.+.+.+ |+. ....+..+|...|++++|...|+++.
T Consensus       221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l  299 (765)
T PRK10049        221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF  299 (765)
T ss_pred             HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence            77643 1222221 111    1123344567888888888887776522 221 22224667888888888888888765


Q ss_pred             CCC-------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHhhccCchHHHH
Q 036661          422 EKT-------VVSWTTMIAGCALNGEFVEALDLFHQMMELD-----------LRPNR---VTFLAVLQACTHAGFLEKGW  480 (615)
Q Consensus       422 ~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~p~~---~~~~~l~~~~~~~~~~~~a~  480 (615)
                      ..+       ......+..++...|++++|...++.+.+..           -.|+.   ..+..+...+...|+.++|+
T Consensus       300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~  379 (765)
T PRK10049        300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAE  379 (765)
T ss_pred             hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence            422       2345566667888899999999998888752           11332   24556777888999999999


Q ss_pred             HHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661          481 GYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELE  558 (615)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  558 (615)
                      ++++++...  .+.+...+..++.++...|++++|++.++++. ..|+ ...+..++..+...|++++|++.++++++..
T Consensus       380 ~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~  457 (765)
T PRK10049        380 MRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE  457 (765)
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            999999853  34456788889999999999999999999987 5565 4566777778889999999999999999999


Q ss_pred             CCCCCChH
Q 036661          559 PHSAAPYV  566 (615)
Q Consensus       559 p~~~~~~~  566 (615)
                      |+++.+..
T Consensus       458 Pd~~~~~~  465 (765)
T PRK10049        458 PQDPGVQR  465 (765)
T ss_pred             CCCHHHHH
Confidence            99875443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.84  E-value=1.9e-18  Score=170.54  Aligned_cols=220  Identities=19%  Similarity=0.173  Sum_probs=101.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHhh
Q 036661          297 NTLISMYSKCGDIDSARFLFDGMCD---RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDL----VTVLSMISGC  369 (615)
Q Consensus       297 ~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~  369 (615)
                      ..+...|...|+++.|..+|+++.+   .+..++..++..+.+.|++++|.+.++.+.+.+..+..    ..+..+...+
T Consensus       111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  190 (389)
T PRK11788        111 QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA  190 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence            3344444444444444444444422   12334444444444444555555444444443221111    1222333344


Q ss_pred             cccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CC--hHHHHHHHHHHHhcCChHHHH
Q 036661          370 GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KT--VVSWTTMIAGCALNGEFVEAL  445 (615)
Q Consensus       370 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~  445 (615)
                      ...|+++.|...++++.+.. +.+...+..+...+.+.|++++|.++++++..  |+  ..+++.++.+|...|++++|.
T Consensus       191 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~  269 (389)
T PRK11788        191 LARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL  269 (389)
T ss_pred             HhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence            44455555555555544432 22333444455555555555555555555443  11  123445555555555555555


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh---cCChHHHHHHHHhC
Q 036661          446 DLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR---KGKLKEALDFVQSM  522 (615)
Q Consensus       446 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~  522 (615)
                      ..++++.+.  .|+...+..++..+.+.|++++|..+++++.+.   .|+...+..++..+..   .|+.++++.+++++
T Consensus       270 ~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~  344 (389)
T PRK11788        270 EFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL  344 (389)
T ss_pred             HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence            555555553  344444455555555555555555555555532   3554445444444332   33555555555544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.83  E-value=3.4e-16  Score=162.03  Aligned_cols=437  Identities=9%  Similarity=-0.029  Sum_probs=256.9

Q ss_pred             hcCCChhHHHHhhccCCC--CCc-hhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhH---HHHHHHHHHhcCChhH
Q 036661          100 AKCDRLDCAYKLFDKMPD--RDV-ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVT---VMGLTQAAIHAKHLSL  173 (615)
Q Consensus       100 ~~~g~~~~a~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~  173 (615)
                      .+.|+++.|+..|++..+  |+. .....++..+...|+.++|+..+++..    .|+...   ...+...+...|+++.
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~  120 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ  120 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            444555555555555443  211 012244444445555555555555444    221111   1111223444455555


Q ss_pred             HHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCC
Q 036661          174 LKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDG  253 (615)
Q Consensus       174 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  253 (615)
                      |.++++.+++... .+...+..++..+...++.++|++.++++....|+...+..++..+...++..+|++.++++.+..
T Consensus       121 Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~  199 (822)
T PRK14574        121 ALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA  199 (822)
T ss_pred             HHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence            5555555554432 234455566666777777777777777777666665555333333333455555777777777653


Q ss_pred             CCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHH
Q 036661          254 FRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISG  333 (615)
Q Consensus       254 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~  333 (615)
                       +.+...+.....++.+.|-...|.++...      .|+..+-.....     =+.+.+.+..+....++..        
T Consensus       200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~-----l~~~~~a~~vr~a~~~~~~--------  259 (822)
T PRK14574        200 -PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQ-----LERDAAAEQVRMAVLPTRS--------  259 (822)
T ss_pred             -CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHH-----HHHHHHHHHHhhccccccc--------
Confidence             12233344444444444444444433332      111111000000     0111111211111100000        


Q ss_pred             HHhcCC---hhHHHHHHHHHHHC-C-CCCCHHHH----HHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 036661          334 YAQKGD---LDEALRLFFAMEAA-G-EVPDLVTV----LSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY  404 (615)
Q Consensus       334 ~~~~~~---~~~a~~~~~~~~~~-~-~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (615)
                        ...+   .+.|+.-++.+... + .++....|    .-.+-++...++...+.+.++.+...+.+....+...+.++|
T Consensus       260 --~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday  337 (822)
T PRK14574        260 --ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY  337 (822)
T ss_pred             --chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence              0111   24455555555442 1 12222222    223455677788888888888888877666667788888899


Q ss_pred             HhcCChHHHHHHHhcCCCC---------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCCH---H
Q 036661          405 SKCGSIGDARELFYALPEK---------TVVSWTTMIAGCALNGEFVEALDLFHQMMELDL-----------RPNR---V  461 (615)
Q Consensus       405 ~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~---~  461 (615)
                      ...+++++|..+++.+..+         +......|.-++...+++++|..+++++.+.-.           .||+   .
T Consensus       338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~  417 (822)
T PRK14574        338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE  417 (822)
T ss_pred             HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence            9999999999988876442         223346788888999999999999999887311           1332   2


Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHH
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACK  539 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~  539 (615)
                      ....++..+...|++.+|++.++++..  .-+-+......+++++...|.+.+|.+.++... ..|+ ..+....+.++.
T Consensus       418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al  495 (822)
T PRK14574        418 GQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAM  495 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence            344556778889999999999999975  445567788889999999999999999998876 5554 456677788888


Q ss_pred             HhCChhHHHHHHHHHhccCCCCCCCh
Q 036661          540 IHRNIEIGEYVAYRLFELEPHSAAPY  565 (615)
Q Consensus       540 ~~~~~~~A~~~~~~~~~~~p~~~~~~  565 (615)
                      ..+++.+|..+.+++++..|+++.+-
T Consensus       496 ~l~e~~~A~~~~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        496 ALQEWHQMELLTDDVISRSPEDIPSQ  521 (822)
T ss_pred             hhhhHHHHHHHHHHHHhhCCCchhHH
Confidence            89999999999999999999987443

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=1.1e-15  Score=137.38  Aligned_cols=442  Identities=13%  Similarity=0.094  Sum_probs=296.7

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH--hcCCchhH-hHHHHHHhhcCCCCChHHHHHHHH
Q 036661           21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACA--KLSDFLYS-QMIHGHIVKSPFWSDIFVQTTMVD   97 (615)
Q Consensus        21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~   97 (615)
                      +=|.|+ .++.+|.+.++.-+|+.|...|+..++..-..|++..+  ...+...+ ++.|-.|.+.| +.+..+|     
T Consensus       118 ~E~nL~-kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-----  190 (625)
T KOG4422|consen  118 TENNLL-KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-----  190 (625)
T ss_pred             chhHHH-HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-----
Confidence            344444 45678899999999999999999888887777766543  33333322 23444444444 3344444     


Q ss_pred             HhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHH
Q 036661           98 MYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSV  177 (615)
Q Consensus        98 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  177 (615)
                         +.|++.+   ++-+...++..+|..+|.++++--..++|.+++++......+.+..+||.+|.+-.-..+    +++
T Consensus       191 ---K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~L  260 (625)
T KOG4422|consen  191 ---KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKL  260 (625)
T ss_pred             ---ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHH
Confidence               3455444   444445556789999999999999999999999999998899999999999998664433    789


Q ss_pred             HHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCC
Q 036661          178 HSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPD  257 (615)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  257 (615)
                      ..+|.+..+.||..|+|+++.+..+.|+++.|.+.                             |++++.+|++.|+.|.
T Consensus       261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a-----------------------------alqil~EmKeiGVePs  311 (625)
T KOG4422|consen  261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA-----------------------------ALQILGEMKEIGVEPS  311 (625)
T ss_pred             HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH-----------------------------HHHHHHHHHHhCCCcc
Confidence            99999999999999999999999999999888655                             4455567778888888


Q ss_pred             HHhHHHHHHhccCchhhhh-hhHHHHHHHHh----cC----CCChhHHHHHHHHHHhcCCHHHHHHHHhccCC-------
Q 036661          258 VTTVVSLLSSCVCPEALVQ-GRLVHSHGIHY----GF----DLDVSVINTLISMYSKCGDIDSARFLFDGMCD-------  321 (615)
Q Consensus       258 ~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------  321 (615)
                      ..+|..++..+.+.++... +..++.++...    .+    +.+...|...+..|.+..+.+-|.++-.-+..       
T Consensus       312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i  391 (625)
T KOG4422|consen  312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI  391 (625)
T ss_pred             hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence            8888888877777666543 33444443321    12    22445566777777777777777666544411       


Q ss_pred             -CC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHH
Q 036661          322 -RT---RVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVC  397 (615)
Q Consensus       322 -~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  397 (615)
                       ++   ..-|..+....|+....+.-...|+.|.-.-+-|+..+...++++....+.++-.-+++..++..|........
T Consensus       392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~  471 (625)
T KOG4422|consen  392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR  471 (625)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH
Confidence             11   12355666777778888888888888888777888888889999888888999888888888887754444443


Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCCCChH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 036661          398 NALIDMYSKCGSIGDARELFYALPEKTVV---SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAG  474 (615)
Q Consensus       398 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  474 (615)
                      .-++..+++..            ..|+..   -+.....-|+. .-.+.....-.+|.+..++  ....+.++-.+.+.|
T Consensus       472 eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G  536 (625)
T KOG4422|consen  472 EEILMLLARDK------------LHPLTPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAG  536 (625)
T ss_pred             HHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcc
Confidence            33333333322            012111   11111111111 1112222233455555443  344555556677889


Q ss_pred             chHHHHHHHHHHHHhhCCCCChhHHH---HHHHHHHhcCChHHHHHHHHhCC
Q 036661          475 FLEKGWGYFNLMTKVYQVNPELNHYS---CMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       475 ~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      ..++|.+++..+.+...-.|.....+   .+++.-.+..+.-.|..+++-+.
T Consensus       537 ~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~  588 (625)
T KOG4422|consen  537 RTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS  588 (625)
T ss_pred             hHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            99999999988865544445444455   45556667788888888888775

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.82  E-value=1.2e-15  Score=158.02  Aligned_cols=439  Identities=10%  Similarity=-0.040  Sum_probs=300.2

Q ss_pred             HHHHHhcCChHHHHHHHHHhHHcCCcCCh--hHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC-ccchHHH--HHHHHH
Q 036661          127 IVGFAQMGFLEKVLCLFYNMRLVGIQADF--VTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA-DVSVCNT--WISAYA  201 (615)
Q Consensus       127 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~--l~~~~~  201 (615)
                      +-...+.|+++.|++.|++..+.  .|+.  ..+ .++..+...|+.++|...++...    .| +...+..  +...|.
T Consensus        41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~  113 (822)
T PRK14574         41 LIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYR  113 (822)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHH
Confidence            34456889999999999998874  4554  233 77777777899999988888887    23 2233333  356788


Q ss_pred             ccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHH
Q 036661          202 KCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLV  280 (615)
Q Consensus       202 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  280 (615)
                      ..|++++|.++|+++.+..| +...+..++..+...++.++|++.++++....  |+...+..++..+...++...|...
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~  191 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQA  191 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHH
Confidence            88999999999998887755 45566667778888888999999888887653  5555554443334334455447777


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 036661          281 HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV  360 (615)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  360 (615)
                      ++++.+.. +.+...+..+..++.+.|-...|.++...-+  +..+-......     +.+.+.+..+-    +..++..
T Consensus       192 ~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~l-----~~~~~a~~vr~----a~~~~~~  259 (822)
T PRK14574        192 SSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQL-----ERDAAAEQVRM----AVLPTRS  259 (822)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHHH-----HHHHHHHHHhh----ccccccc
Confidence            77777764 4456666667777777777777776665532  11111110000     01112111111    1111100


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHh-cCCCCc-----hHHHHHHHHHHHhcCChHHHHHHHhcCCCC----ChHHHHH
Q 036661          361 TVLSMISGCGQSGALELGKWFDNYACS-GGLKDN-----VMVCNALIDMYSKCGSIGDARELFYALPEK----TVVSWTT  430 (615)
Q Consensus       361 ~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~  430 (615)
                      -       -.+---.+.+..-++.+.. .+..|.     ..+..-.+-++...|++.++++.++.+..+    ...+-..
T Consensus       260 ~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a  332 (822)
T PRK14574        260 E-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW  332 (822)
T ss_pred             c-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence            0       0001123445555555444 222232     122234456778899999999999999863    2346677


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCC----------CCC
Q 036661          431 MIAGCALNGEFVEALDLFHQMMELD-----LRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV----------NPE  495 (615)
Q Consensus       431 l~~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~  495 (615)
                      +..+|...+++++|+.+++++....     ..++......|.-++..++++++|..+++.+.+....          .|+
T Consensus       333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn  412 (822)
T PRK14574        333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN  412 (822)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence            8999999999999999999997743     1223334577888999999999999999999863110          122


Q ss_pred             h---hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHH
Q 036661          496 L---NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMAN  570 (615)
Q Consensus       496 ~---~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  570 (615)
                      .   ..+..++..+.-.|+..+|.+.++++.  .+-+...+..+...+...|.+.+|++.++.+..++|++..+....+.
T Consensus       413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~  492 (822)
T PRK14574        413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE  492 (822)
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence            1   234456788899999999999999997  44467788889999999999999999999999999999999999999


Q ss_pred             HHHccCChHHHHHHHHHHHhcCc
Q 036661          571 IYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       571 ~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ++...|+|++|.++.+++.+..+
T Consensus       493 ~al~l~e~~~A~~~~~~l~~~~P  515 (822)
T PRK14574        493 TAMALQEWHQMELLTDDVISRSP  515 (822)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhCC
Confidence            99999999999999988865444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.80  E-value=2.3e-16  Score=142.73  Aligned_cols=272  Identities=12%  Similarity=0.080  Sum_probs=212.6

Q ss_pred             HHHHhcCCHHHHHHHHhccCCCCcccHHHH------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccch
Q 036661          301 SMYSKCGDIDSARFLFDGMCDRTRVSWTAM------ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGA  374 (615)
Q Consensus       301 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  374 (615)
                      --|.+.|+++.|.++++-+.+.|..+-+..      +.-+....++..|.+.-+...... +-+......--......|+
T Consensus       427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd  505 (840)
T KOG2003|consen  427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD  505 (840)
T ss_pred             HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence            457789999999999988866655443322      222222445667766665554332 3444444333344556789


Q ss_pred             hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036661          375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQM  451 (615)
Q Consensus       375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  451 (615)
                      +++|.+.+++.....-......|+ +.-.+-..|++++|++.|-++..   .+....-.+...|-...++..|++++-+.
T Consensus       506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            999999999998766444444444 44456788999999999977654   67778888889999999999999999988


Q ss_pred             HHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhh
Q 036661          452 MELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGI  530 (615)
Q Consensus       452 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~  530 (615)
                      ... ++.|+..+..|...|-+.|+-..|.+++-.-.+  -++-+..+...|...|....=+++|+.+|++.. .+|+..-
T Consensus       585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k  661 (840)
T KOG2003|consen  585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK  661 (840)
T ss_pred             ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence            876 566778899999999999999999988766553  456678899999999999999999999999986 8999999


Q ss_pred             HHHHHHHH-HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCC
Q 036661          531 WGTLLCAC-KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGR  577 (615)
Q Consensus       531 ~~~l~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  577 (615)
                      |..++..| ++.|++.+|...|+...+..|.+..++..|+.++...|.
T Consensus       662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            98888666 568999999999999999999999999999999998885

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.79  E-value=7.5e-14  Score=132.39  Aligned_cols=459  Identities=13%  Similarity=0.038  Sum_probs=311.5

Q ss_pred             cCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHH
Q 036661          133 MGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELV  212 (615)
Q Consensus       133 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  212 (615)
                      ..+.+.|.-++....+. ++.+.    -|.-++++...++.|+.++....+. ++.+..+|.+....--..|..+...++
T Consensus       389 lE~~~darilL~rAvec-cp~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki  462 (913)
T KOG0495|consen  389 LEEPEDARILLERAVEC-CPQSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI  462 (913)
T ss_pred             ccChHHHHHHHHHHHHh-ccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence            34444555555555543 11121    2333455556666677777766653 455666666666666667777777666


Q ss_pred             HHhcccC------CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCC--HHhHHHHHHhccCchhhhhhhHHHHHH
Q 036661          213 FRGIEEG------LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPD--VTTVVSLLSSCVCPEALVQGRLVHSHG  284 (615)
Q Consensus       213 ~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~  284 (615)
                      .++-...      ..+-..|-.=...|-..|..-.+..+....+..|+.-.  ..|+......|.+.+.++-+..+|...
T Consensus       463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a  542 (913)
T KOG0495|consen  463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA  542 (913)
T ss_pred             HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence            6543221      22344455555566666777777777777766665433  356666667777777777777777777


Q ss_pred             HHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036661          285 IHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVT  361 (615)
Q Consensus       285 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  361 (615)
                      ++.- +.+..++......--..|..+....+|++.   ++.....|......+-..|+...|..++.+..+.. +-+...
T Consensus       543 lqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseei  620 (913)
T KOG0495|consen  543 LQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEI  620 (913)
T ss_pred             Hhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHH
Confidence            6643 445556666665555667777777777776   34455667777777777888888888888887764 335566


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hHHHHHHHHHHHhc
Q 036661          362 VLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KT-VVSWTTMIAGCALN  438 (615)
Q Consensus       362 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~  438 (615)
                      +...+..-....+++.|..+|......  .|+..+|.--+....-.++.++|.+++++..+  |+ ...|..+.+.+-+.
T Consensus       621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~  698 (913)
T KOG0495|consen  621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQM  698 (913)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH
Confidence            777777777888888888888877653  56677777667767777888888888887766  43 34777788888888


Q ss_pred             CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 036661          439 GEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALD  517 (615)
Q Consensus       439 ~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  517 (615)
                      ++.+.|.+.|..-.+.  -|+. ..|..|...-.+.|.+..|..++++..-  .-+.+...|...+++=.|.|+.+.|..
T Consensus       699 ~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR~gn~~~a~~  774 (913)
T KOG0495|consen  699 ENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELRAGNKEQAEL  774 (913)
T ss_pred             HHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence            8888888877776654  3444 5677777777788888889999888874  334556778888888889999998888


Q ss_pred             HHHhCC-CC-------------------------------CChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661          518 FVQSMP-IK-------------------------------SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPY  565 (615)
Q Consensus       518 ~~~~~~-~~-------------------------------p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  565 (615)
                      +..++. .-                               -|+..+......+....++++|...|+++++.+|++..+|
T Consensus       775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w  854 (913)
T KOG0495|consen  775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW  854 (913)
T ss_pred             HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence            776653 11                               1222334444556667788889999999999999988888


Q ss_pred             HhHHHHHHccCChHHHHHHHHHHHhcCcccCCceeEEEecCe
Q 036661          566 VEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLVHINGK  607 (615)
Q Consensus       566 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  607 (615)
                      ..+-..+.+.|.-++-.+++++.....  +.-|..|..+-++
T Consensus       855 a~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avSK~  894 (913)
T KOG0495|consen  855 AWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVSKD  894 (913)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHhhh
Confidence            888888889998888888887765433  3345555544433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.79  E-value=3.3e-13  Score=128.12  Aligned_cols=438  Identities=12%  Similarity=0.079  Sum_probs=296.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHH----HhcCCCccchHHHHHHHHH
Q 036661          126 MIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGI----HIGVDADVSVCNTWISAYA  201 (615)
Q Consensus       126 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~  201 (615)
                      |.-+|++..-++.|..+++..++. ++.+...|.+-...--..|+.+.+.++....+    ..|+..+...|..=...+-
T Consensus       412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e  490 (913)
T KOG0495|consen  412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE  490 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence            334566667778888888887764 66677777776666667777777777765443    4567777777777777777


Q ss_pred             ccCCHHHHHHHHHhcccC----CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhh
Q 036661          202 KCNDLKMAELVFRGIEEG----LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQG  277 (615)
Q Consensus       202 ~~~~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  277 (615)
                      +.|..-.+..+...+...    ..-..+|..-...|.+.+.++-|..+|...++.- +-+...|......--..|..+..
T Consensus       491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl  569 (913)
T KOG0495|consen  491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESL  569 (913)
T ss_pred             hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHH
Confidence            777766666666554432    2234567777777777777777777777776532 22333444444444456667777


Q ss_pred             hHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036661          278 RLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAG  354 (615)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  354 (615)
                      ..++..++..- +-....+......+-..|++..|..++....   +.+...|-.-+.....+.+++.|..+|.+.... 
T Consensus       570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-  647 (913)
T KOG0495|consen  570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-  647 (913)
T ss_pred             HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence            77777776653 3344455555666666777777777777662   224446666667777777777777777776653 


Q ss_pred             CCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChHHHHHH
Q 036661          355 EVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-TVVSWTTM  431 (615)
Q Consensus       355 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l  431 (615)
                       .|+...|..-+..-.-.++.++|.+++++..+.- +.-...|..+.+.+-+.++.+.|.+.|..-.+  | .+..|-.|
T Consensus       648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL  725 (913)
T KOG0495|consen  648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL  725 (913)
T ss_pred             -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence             4555555555554555667777777776666542 44455666777777777777777777766554  3 34466666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhC--------------------
Q 036661          432 IAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ--------------------  491 (615)
Q Consensus       432 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------------  491 (615)
                      ...--+.|++..|..++++..-.+ +-|...|...++.-.+.|..+.|..++.++.+++.                    
T Consensus       726 akleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkT  804 (913)
T KOG0495|consen  726 AKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKT  804 (913)
T ss_pred             HHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccch
Confidence            666666677777777777776653 34456677777777777777777666666554321                    


Q ss_pred             --------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          492 --------VNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       492 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                              ...|.++.-.++..+....++++|.+.|.+.. ..|| ..+|..+...+.++|.-++-.+++.+....+|..
T Consensus       805 ks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h  884 (913)
T KOG0495|consen  805 KSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH  884 (913)
T ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence                    12456667778888999999999999999987 5554 5688888899999999999999999999999998


Q ss_pred             CCChHhHHH
Q 036661          562 AAPYVEMAN  570 (615)
Q Consensus       562 ~~~~~~l~~  570 (615)
                      ...|.....
T Consensus       885 G~~W~avSK  893 (913)
T KOG0495|consen  885 GELWQAVSK  893 (913)
T ss_pred             CcHHHHHhh
Confidence            888877644

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.78  E-value=5.3e-14  Score=138.66  Aligned_cols=566  Identities=12%  Similarity=0.039  Sum_probs=351.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCCh
Q 036661           26 IREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRL  105 (615)
Q Consensus        26 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  105 (615)
                      ...+.-.|+.++|.+++...++..+. +...|.+|...|-..|+.+.+...+-.+.... +.|...|-.+.......|.+
T Consensus       146 AN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i  223 (895)
T KOG2076|consen  146 ANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI  223 (895)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence            34444569999999999999987654 78899999999999999999998887776665 56678999999999999999


Q ss_pred             hHHHHhhccCCCCCch---hHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHH----HHHHHhcCChhHHHHHH
Q 036661          106 DCAYKLFDKMPDRDVA---SWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL----TQAAIHAKHLSLLKSVH  178 (615)
Q Consensus       106 ~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~~~~~~a~~~~  178 (615)
                      +.|.-.|.+..+.++.   .+---+..|-+.|+...|.+.|.++.+.....|..-+..+    ++.+...++-+.|.+.+
T Consensus       224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l  303 (895)
T KOG2076|consen  224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL  303 (895)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999998764333   3334466788999999999999999886543343333333    44455666668888887


Q ss_pred             HHHHHhc-CCCccchHHHHHHHHHccCCHHHHHHHHHhcccC------------------------CCCcchHH----HH
Q 036661          179 SFGIHIG-VDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG------------------------LRTVVSWN----SI  229 (615)
Q Consensus       179 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------------~~~~~~~~----~l  229 (615)
                      +.....+ -..+...++.++..|.+...++.|..........                        .++..+|+    .+
T Consensus       304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl  383 (895)
T KOG2076|consen  304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL  383 (895)
T ss_pred             HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence            7777632 3345668889999999998888887766554430                        11111222    12


Q ss_pred             HHHHhcCCChhhHHHHHHHHHHCC--CCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 036661          230 IGGCTYGDKFDDSLNFYRHMIYDG--FRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCG  307 (615)
Q Consensus       230 i~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  307 (615)
                      .-++......+....+........  +.-+...|..+..++...|.+..|..++..+......-+..+|-.+..+|...|
T Consensus       384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~  463 (895)
T KOG2076|consen  384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG  463 (895)
T ss_pred             hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence            223334444444455555555555  334456788888899999999999999999888765566778888999999999


Q ss_pred             CHHHHHHHHhccCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHH--------CCCCCCHHHHHHHHHhhcccchhh
Q 036661          308 DIDSARFLFDGMCDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEA--------AGEVPDLVTVLSMISGCGQSGALE  376 (615)
Q Consensus       308 ~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~~~~~~  376 (615)
                      ..+.|...|+.+..-   +...-..|...+-+.|++++|.+.+..+..        .+..|+..........+...|+.+
T Consensus       464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E  543 (895)
T KOG2076|consen  464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE  543 (895)
T ss_pred             hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence            999999999887332   344555667778889999999998888542        224455555555555566666655


Q ss_pred             HHHHHHHHHHhcC----------------------CCCchHHHHHHHHHHHhcCChHHHHHHHhcC--------CCCCh-
Q 036661          377 LGKWFDNYACSGG----------------------LKDNVMVCNALIDMYSKCGSIGDARELFYAL--------PEKTV-  425 (615)
Q Consensus       377 ~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~-  425 (615)
                      .-..+...|....                      .+....+...++.+-.+.++.....+-...-        ..-+. 
T Consensus       544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid  623 (895)
T KOG2076|consen  544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID  623 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence            4443333332210                      0111112222222222222222111111110        00011 


Q ss_pred             ---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCH---HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-
Q 036661          426 ---VSWTTMIAGCALNGEFVEALDLFHQMMELDL--RPNR---VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-  496 (615)
Q Consensus       426 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-  496 (615)
                         ..+..++.++++.+.+++|+.+...+.....  .++.   ..-...+.+....+++..|...++.+...+++..++ 
T Consensus       624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~  703 (895)
T KOG2076|consen  624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY  703 (895)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence               1233444555566666666666665554321  1111   111222334455566666666666555443322221 


Q ss_pred             --hHHHH-----------------------------------HHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHH-HH
Q 036661          497 --NHYSC-----------------------------------MADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLL-CA  537 (615)
Q Consensus       497 --~~~~~-----------------------------------l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~-~~  537 (615)
                        ..|+.                                   .+..+...+.+.-|+..+-++- ..|+.+..+.++ .+
T Consensus       704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lgla  783 (895)
T KOG2076|consen  704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLA  783 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence              12221                                   1222334466666766655443 445543333222 22


Q ss_pred             HH----------HhCChhHHHHHHHHHhccCCC--CCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          538 CK----------IHRNIEIGEYVAYRLFELEPH--SAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       538 ~~----------~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +.          ++-.+-++..++++..++...  .-.+.+++|.+|...|-..-|..+|++.++-.+
T Consensus       784 fih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p  851 (895)
T KOG2076|consen  784 FIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP  851 (895)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence            11          122445666677666665543  567899999999999999999999999987653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.77  E-value=4.1e-14  Score=139.41  Aligned_cols=527  Identities=10%  Similarity=0.036  Sum_probs=375.2

Q ss_pred             HHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhcc---CCCCCchhHHHHHHHHHhcCChHHHH
Q 036661           64 CAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDK---MPDRDVASWNAMIVGFAQMGFLEKVL  140 (615)
Q Consensus        64 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~  140 (615)
                      +...|+.++|..++.++++.. +.....|-.|...|-..|+.+++...+--   +...|...|-.+.....+.|++++|.
T Consensus       149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence            444599999999999999987 67788899999999999999999875443   33457789999999999999999999


Q ss_pred             HHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHH----HHHHHHccCCHHHHHHHHHhc
Q 036661          141 CLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNT----WISAYAKCNDLKMAELVFRGI  216 (615)
Q Consensus       141 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~~  216 (615)
                      -+|.+..+.. +++...+--=...|-+.|+...|..-+..+.....+.|..-...    .+..+...++-+.|.+.++..
T Consensus       228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~  306 (895)
T KOG2076|consen  228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA  306 (895)
T ss_pred             HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999998864 33444444455667789999999999999998765444443333    345667778889999998876


Q ss_pred             ccC---CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhH--------------------------HHHHHh
Q 036661          217 EEG---LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTV--------------------------VSLLSS  267 (615)
Q Consensus       217 ~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--------------------------~~ll~~  267 (615)
                      ...   .-+...++.++..+.+...++.+......+......+|..-+                          ..+.-+
T Consensus       307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic  386 (895)
T KOG2076|consen  307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC  386 (895)
T ss_pred             HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence            653   446778899999999999999999999888762222222111                          123334


Q ss_pred             ccCchhhhhhhHHHHHHHHhcCCC--ChhHHHHHHHHHHhcCCHHHHHHHHhccCCC----CcccHHHHHHHHHhcCChh
Q 036661          268 CVCPEALVQGRLVHSHGIHYGFDL--DVSVINTLISMYSKCGDIDSARFLFDGMCDR----TRVSWTAMISGYAQKGDLD  341 (615)
Q Consensus       268 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~  341 (615)
                      +......+....+..........|  +...|.-+..+|.+.|++.+|..+|..+...    +...|-.+..+|...|.++
T Consensus       387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e  466 (895)
T KOG2076|consen  387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE  466 (895)
T ss_pred             hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence            455666667777777777776443  5678899999999999999999999998432    5668999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHh--------cCCCCchHHHHHHHHHHHhcCChHHH
Q 036661          342 EALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACS--------GGLKDNVMVCNALIDMYSKCGSIGDA  413 (615)
Q Consensus       342 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A  413 (615)
                      .|.+.|+...... +-+...-..|-..+.+.|+.++|.+.+..+..        .+..|...+.......+.+.|+.++-
T Consensus       467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f  545 (895)
T KOG2076|consen  467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF  545 (895)
T ss_pred             HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence            9999999988752 33444555677778899999999999998542        34566777777778888899988775


Q ss_pred             HHHHhcCCCC--------------------------ChHHHHHHHHHHHhcCChHHHHHH------HHHHHHcCCCCCH-
Q 036661          414 RELFYALPEK--------------------------TVVSWTTMIAGCALNGEFVEALDL------FHQMMELDLRPNR-  460 (615)
Q Consensus       414 ~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~a~~~------~~~~~~~~~~p~~-  460 (615)
                      ..+-..|..+                          +......+..+-.+.++.....+-      +......|+..+. 
T Consensus       546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw  625 (895)
T KOG2076|consen  546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW  625 (895)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence            4443333221                          111122222332233332221111      1112223333333 


Q ss_pred             -HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh---HH-HHHHHHHHhcCChHHHHHHHHhCC-C-----CCC-h
Q 036661          461 -VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN---HY-SCMADLLGRKGKLKEALDFVQSMP-I-----KSD-A  528 (615)
Q Consensus       461 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~-~-----~p~-~  528 (615)
                       ..+.-++.++++.+++++|+.+...+....-+..+..   .+ .....+....+++..|.+.++.+. .     .|. .
T Consensus       626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~  705 (895)
T KOG2076|consen  626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL  705 (895)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence             2455667788999999999999998886544444433   22 334566778899999999999986 1     332 2


Q ss_pred             hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC-CCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          529 GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS-AAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ..|+...+...+.++-.--.+.+..+...+|++ +..+...|..+...+.|..|+..+-++-...+
T Consensus       706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~p  771 (895)
T KOG2076|consen  706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNP  771 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCC
Confidence            355555566666676666667777777778877 66666778888899999999998888776664

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=2.2e-15  Score=135.56  Aligned_cols=369  Identities=11%  Similarity=0.073  Sum_probs=228.0

Q ss_pred             hccCCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHH
Q 036661           12 KIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFV   91 (615)
Q Consensus        12 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   91 (615)
                      ++.+.+.. +|.+||.++++-...+.|.+++.+..+...+.+..+||.+|.+..-..+    +.+..+|......||..+
T Consensus       201 E~~PKT~e-t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~T  275 (625)
T KOG4422|consen  201 ETLPKTDE-TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFT  275 (625)
T ss_pred             hhcCCCch-hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHh
Confidence            33344555 6777777777777777777777777777677777777777766443322    567777777777777777


Q ss_pred             HHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCCh
Q 036661           92 QTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHL  171 (615)
Q Consensus        92 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  171 (615)
                      +|+++++.++.|+++.|.+                           .|++++-+|++-|+.|...+|..+|..+++.++.
T Consensus       276 fNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp  328 (625)
T KOG4422|consen  276 FNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP  328 (625)
T ss_pred             HHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence            7777777777776665543                           3566778888888888888888888888877776


Q ss_pred             hHH-HHHHHHHHHh----cCC----CccchHHHHHHHHHccCCHHHHHHHHHhcccC------CC---CcchHHHHHHHH
Q 036661          172 SLL-KSVHSFGIHI----GVD----ADVSVCNTWISAYAKCNDLKMAELVFRGIEEG------LR---TVVSWNSIIGGC  233 (615)
Q Consensus       172 ~~a-~~~~~~~~~~----~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~---~~~~~~~li~~~  233 (615)
                      .+. ..++..+...    .++    .|...|...+..|.+..+.+-|.++-.-+..+      .|   ...-|..+....
T Consensus       329 ~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~li  408 (625)
T KOG4422|consen  329 QKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLI  408 (625)
T ss_pred             hhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHH
Confidence            543 3333333321    122    23445677777787888888887776655443      12   233466677777


Q ss_pred             hcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 036661          234 TYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSAR  313 (615)
Q Consensus       234 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  313 (615)
                      ++....+....+|+.|+..-+-|+..+...++++....|.++-..+++..++..|.........-++..+++..      
T Consensus       409 cq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------  482 (625)
T KOG4422|consen  409 CQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------  482 (625)
T ss_pred             HHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------
Confidence            88888899999999999888889999999999999999999999999999988775444333333333333221      


Q ss_pred             HHHhccCCCCcccHHHHHHHHHhc-CCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcC-C
Q 036661          314 FLFDGMCDRTRVSWTAMISGYAQK-GDL-DEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGG-L  390 (615)
Q Consensus       314 ~~~~~~~~~~~~~~~~ll~~~~~~-~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~  390 (615)
                            ..|+...-..+-...++. -++ +.....-.++...  .......+.+...+.+.|..++|.+++..+.+.+ -
T Consensus       483 ------~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~  554 (625)
T KOG4422|consen  483 ------LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK  554 (625)
T ss_pred             ------CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence                  112111111111111110 011 1111112223333  2333444555555667777777777777774422 2


Q ss_pred             C---CchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChH
Q 036661          391 K---DNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV  426 (615)
Q Consensus       391 ~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  426 (615)
                      .   |......-+++.-.+.++...|..+++-+...|..
T Consensus       555 ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~  593 (625)
T KOG4422|consen  555 IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP  593 (625)
T ss_pred             CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence            2   22333335555566677777777777776554443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.75  E-value=9.8e-16  Score=138.70  Aligned_cols=431  Identities=12%  Similarity=0.079  Sum_probs=300.6

Q ss_pred             HHHHHHHH---HHhcCChhHHHHHHHHHHHhcCCCccch-HHHHHHHHHccCCHHHHHHHHHhcccCCCCc------chH
Q 036661          157 TVMGLTQA---AIHAKHLSLLKSVHSFGIHIGVDADVSV-CNTWISAYAKCNDLKMAELVFRGIEEGLRTV------VSW  226 (615)
Q Consensus       157 ~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~  226 (615)
                      ||+.|...   |....-..+|+..++.+.+...-|+... -..+.+.+.+...+.+|.++++......|++      ...
T Consensus       200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil  279 (840)
T KOG2003|consen  200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL  279 (840)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence            45544443   4444556778888888888777777653 3456678889999999999998877665543      234


Q ss_pred             HHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCC------------CChh
Q 036661          227 NSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFD------------LDVS  294 (615)
Q Consensus       227 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~  294 (615)
                      +.+.-.+.+.|.++.|+..|+...+..  |+..+-..++-++...|+.+.....|..++.....            |+..
T Consensus       280 ~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~  357 (840)
T KOG2003|consen  280 NNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN  357 (840)
T ss_pred             hhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence            444456889999999999999988754  88888777888888899999999999998864322            2223


Q ss_pred             HHHHHH-----HHHHhcCC--HHHHH----HHHhccCCCCccc---H------------------HHHHHHHHhcCChhH
Q 036661          295 VINTLI-----SMYSKCGD--IDSAR----FLFDGMCDRTRVS---W------------------TAMISGYAQKGDLDE  342 (615)
Q Consensus       295 ~~~~l~-----~~~~~~~~--~~~a~----~~~~~~~~~~~~~---~------------------~~ll~~~~~~~~~~~  342 (615)
                      ..+.-+     .-..+.+.  .+++.    ++..-+..|+...   |                  -.-...+.++|+++.
T Consensus       358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~  437 (840)
T KOG2003|consen  358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG  437 (840)
T ss_pred             HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence            332222     22222221  22222    1222222332210   1                  011335788999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHhh--cccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcC
Q 036661          343 ALRLFFAMEAAGEVPDLVTVLSMISGC--GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL  420 (615)
Q Consensus       343 a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  420 (615)
                      |+++++-+....-+.-...-+.|...+  ....++..|.++-+...... ..+......-.......|++++|.+.+++.
T Consensus       438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea  516 (840)
T KOG2003|consen  438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA  516 (840)
T ss_pred             HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence            999998887664443333333332222  22336677777766665433 233333333333445678999999999999


Q ss_pred             CCCChHHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh
Q 036661          421 PEKTVVSWTTM---IAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN  497 (615)
Q Consensus       421 ~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  497 (615)
                      ...|...-.+|   .-.+-..|+.++|+..|-++... +..+...+..+...|....+...|++++.....  -++.|+.
T Consensus       517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~  593 (840)
T KOG2003|consen  517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPA  593 (840)
T ss_pred             HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHH
Confidence            88776543333   34467789999999999988764 355667888889999999999999999988874  5666788


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHh-CC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQS-MP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG  575 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  575 (615)
                      +.+.|.+.|-+.|+...|+++.-. .. ++.+..+..-|..-|....-.++|+.+++++--+.|+.......++.++.+.
T Consensus       594 ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs  673 (840)
T KOG2003|consen  594 ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS  673 (840)
T ss_pred             HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence            999999999999999999998644 34 5556677777777777777889999999999999999766667778899999


Q ss_pred             CChHHHHHHHHHHHhcCc
Q 036661          576 GRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       576 g~~~~A~~~~~~~~~~~~  593 (615)
                      |+|.+|.++|+....+-+
T Consensus       674 gnyqka~d~yk~~hrkfp  691 (840)
T KOG2003|consen  674 GNYQKAFDLYKDIHRKFP  691 (840)
T ss_pred             ccHHHHHHHHHHHHHhCc
Confidence            999999999998876544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.71  E-value=2.6e-17  Score=153.45  Aligned_cols=256  Identities=18%  Similarity=0.157  Sum_probs=112.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC
Q 036661          330 MISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVL-SMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG  408 (615)
Q Consensus       330 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  408 (615)
                      +...+.+.|++++|++++++......+|+...|. .+...+...++.+.|...++.+...+ +.++..+..++.. ...+
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence            3455556666777777665444332233333333 33334455667777777777776654 2345556666666 6788


Q ss_pred             ChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccCchHHHHHHHHH
Q 036661          409 SIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNRVTFLAVLQACTHAGFLEKGWGYFNL  485 (615)
Q Consensus       409 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  485 (615)
                      ++++|.+++...-+  +++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.+++
T Consensus        92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~  171 (280)
T PF13429_consen   92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK  171 (280)
T ss_dssp             --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            88888888776543  566677788888899999999999999987643 345667788888899999999999999999


Q ss_pred             HHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661          486 MTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA  562 (615)
Q Consensus       486 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  562 (615)
                      ..+.   .|+ ......++..+...|+.+++.++++...  .+.++..+..++.++...|+.++|...++++.+.+|+|+
T Consensus       172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~  248 (280)
T PF13429_consen  172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP  248 (280)
T ss_dssp             HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence            9853   454 6778889999999999999888887775  345666788999999999999999999999999999999


Q ss_pred             CChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          563 APYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      .....+++++...|+.++|.++++++..
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            9999999999999999999999987754

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.6e-13  Score=125.97  Aligned_cols=215  Identities=14%  Similarity=0.090  Sum_probs=170.6

Q ss_pred             cccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHH
Q 036661          370 GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALD  446 (615)
Q Consensus       370 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~  446 (615)
                      .-.|+.-.+..-|+..++....++ ..|--+..+|....+.++-...|+....   .|+.+|..-.+.+.-.+++++|..
T Consensus       337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence            345677778888888877653332 2256666778888999999999987665   466788888888888899999999


Q ss_pred             HHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 036661          447 LFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-I  524 (615)
Q Consensus       447 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~  524 (615)
                      =|++.++.  .|+. ..|..+.-+..+.+.++++...|++..++  ++-.+.+|+..+.++..++++++|.+.|+... .
T Consensus       416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            99999986  5554 67888887888899999999999999974  45567788889999999999999999999875 4


Q ss_pred             CCC-------hhhH-HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661          525 KSD-------AGIW-GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       525 ~p~-------~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                      .|+       ...+ ..-+..++-.+++..|++++.++++++|....+|..|+.+..++|+.++|+++|++..
T Consensus       492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            443       1111 1111223345899999999999999999999999999999999999999999998764

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.68  E-value=8.7e-13  Score=129.63  Aligned_cols=532  Identities=13%  Similarity=0.022  Sum_probs=299.7

Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCC
Q 036661           40 LLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRD  119 (615)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  119 (615)
                      .+|-.+...|+.|+..||..++..|+..|+.+.|- +|.-|.-...+.+...++.++....+.++.+.+.       +|.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            46777888999999999999999999999999988 9999988888888889999999999989887766       688


Q ss_pred             chhHHHHHHHHHhcCChHH---HHHHHHHhHH----cCCcCChhHHHHHHHHHHhcCChh--------HHHHHHHHHHHh
Q 036661          120 VASWNAMIVGFAQMGFLEK---VLCLFYNMRL----VGIQADFVTVMGLTQAAIHAKHLS--------LLKSVHSFGIHI  184 (615)
Q Consensus       120 ~~~~~~li~~~~~~g~~~~---a~~~~~~m~~----~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~  184 (615)
                      ..+|..|..+|.+.||...   +.+.++....    .|+..-..-+-..++ |+..-..+        --+.++...++.
T Consensus        83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~-c~p~~lpda~n~illlv~eglwaqllkl  161 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIH-CCPHSLPDAENAILLLVLEGLWAQLLKL  161 (1088)
T ss_pred             hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcc-cCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999998654   3332222221    221111111111111 11111111        112233333333


Q ss_pred             cCCCccchHH-H---HHHHHHc-cCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHH
Q 036661          185 GVDADVSVCN-T---WISAYAK-CNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVT  259 (615)
Q Consensus       185 ~~~~~~~~~~-~---l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  259 (615)
                      +.......++ .   +++-... ...+++-..+.+...+ .++..++...+..-..+|+.+.|..++.+|.+.|.+.+..
T Consensus       162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H  240 (1088)
T KOG4318|consen  162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH  240 (1088)
T ss_pred             HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence            3111111111 1   1222222 2334444455555554 6899999999999999999999999999999999988888


Q ss_pred             hHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcC-
Q 036661          260 TVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKG-  338 (615)
Q Consensus       260 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~-  338 (615)
                      -|..++-+   .++...+..+++.|...|+.|+..|+...+..+...|....+...     .+....+.+-..+-+-.| 
T Consensus       241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg~  312 (1088)
T KOG4318|consen  241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRGL  312 (1088)
T ss_pred             cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhccc
Confidence            88887765   788888899999999999999999988777777665442222211     112222222222222222 


Q ss_pred             ----C-----hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCC---CCchHHHHHHHHHHHh
Q 036661          339 ----D-----LDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL---KDNVMVCNALIDMYSK  406 (615)
Q Consensus       339 ----~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~  406 (615)
                          +     ..-....+.+..-.|.......| +++.-...+|.-+..+++...+.....   ..++..+..++.-|.+
T Consensus       313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr  391 (1088)
T KOG4318|consen  313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR  391 (1088)
T ss_pred             HhHHHHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence                1     11122222222222333233222 222223335666666666555543211   1123334333433332


Q ss_pred             cCChHHHHHHHh--cCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCC-------CHHHHHHHHHHhh
Q 036661          407 CGSIGDARELFY--ALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMME----LDLRP-------NRVTFLAVLQACT  471 (615)
Q Consensus       407 ~g~~~~A~~~~~--~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p-------~~~~~~~l~~~~~  471 (615)
                      .-+..-...++.  +...  -+...-..+.....+. +...+++-+..+..    .-..|       -...-+.++..|+
T Consensus       392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~  470 (1088)
T KOG4318|consen  392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN  470 (1088)
T ss_pred             HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence            221111111110  0000  0000000011111110 11111111111111    00111       1123344555555


Q ss_pred             ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCChhhHHHHHHHHHHhCChhH
Q 036661          472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-----IKSDAGIWGTLLCACKIHRNIEI  546 (615)
Q Consensus       472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~  546 (615)
                      +.-+..+++..-+..... -++   ..|..|++.+....+.+.|..+..+..     ..-+...+..+.....+.+....
T Consensus       471 se~n~lK~l~~~ekye~~-lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~d  546 (1088)
T KOG4318|consen  471 SEYNKLKILCDEEKYEDL-LFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYD  546 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHH-Hhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHH
Confidence            555555555544444421 222   668888898888899999999888876     22344456667777788888888


Q ss_pred             HHHHHHHHhcc---CCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661          547 GEYVAYRLFEL---EPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKK  595 (615)
Q Consensus       547 A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  595 (615)
                      +.+++++..+.   .|.-......+.+-....|+.+.-.+..+-+...|+.-
T Consensus       547 l~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e  598 (1088)
T KOG4318|consen  547 LSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE  598 (1088)
T ss_pred             HHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence            88888777652   23333445555666677888888888888888877765

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.65  E-value=7.1e-13  Score=130.23  Aligned_cols=563  Identities=11%  Similarity=0.038  Sum_probs=298.6

Q ss_pred             CCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCC------------------------CCCCcccHHHHHHHHHhcCCc
Q 036661           15 RSSTINQWNSQIREAVDKNEAHKALLLFRRMKKND------------------------IEPNNLTFPFIAKACAKLSDF   70 (615)
Q Consensus        15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------------~~~~~~~~~~ll~~~~~~~~~   70 (615)
                      -|+.+ +|.++|..|+..|+.+.|- +|..|.-..                        -.|.+.+|..|+.+|...||.
T Consensus        22 ~PnRv-tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDl   99 (1088)
T KOG4318|consen   22 LPNRV-TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDL   99 (1088)
T ss_pred             CCchh-hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccch
Confidence            56677 9999999999999999998 887776432                        235666788888888888776


Q ss_pred             hh---HhHHHHHHh----hcCC-----------------CCChHHHHHHHHHhhcCCChhHHHHhhccCC----------
Q 036661           71 LY---SQMIHGHIV----KSPF-----------------WSDIFVQTTMVDMYAKCDRLDCAYKLFDKMP----------  116 (615)
Q Consensus        71 ~~---a~~~~~~~~----~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----------  116 (615)
                      ..   +.+.+..+.    ..|+                 -||..   ..+......|-|+.+++++..++          
T Consensus       100 i~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~v  176 (1088)
T KOG4318|consen  100 ILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV  176 (1088)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence            44   222122211    1111                 11111   11112222333444444443222          


Q ss_pred             ------------------------CCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChh
Q 036661          117 ------------------------DRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLS  172 (615)
Q Consensus       117 ------------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  172 (615)
                                              .++..+|..++.+-.-+|+.+.|..++.+|++.|+..+..-|-.++-+   .++..
T Consensus       177 fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q  253 (1088)
T KOG4318|consen  177 FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQ  253 (1088)
T ss_pred             HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccch
Confidence                                    145666777777777777788888888888877777776666555554   66777


Q ss_pred             HHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCC-----C-----hhhH
Q 036661          173 LLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGD-----K-----FDDS  242 (615)
Q Consensus       173 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~-----~~~a  242 (615)
                      .+..+++.|...|+.|+..|+...+-.+...|....+...       .+....+++-+.+-+-.|     +     ....
T Consensus       254 ~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-------sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v  326 (1088)
T KOG4318|consen  254 VFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-------SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSV  326 (1088)
T ss_pred             HHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-------cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            7777777777777778777777766666654432211111       222222222111111111     1     1111


Q ss_pred             HHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcC---CCChhHHHHHHHHHHhc-------------
Q 036661          243 LNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGF---DLDVSVINTLISMYSKC-------------  306 (615)
Q Consensus       243 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~-------------  306 (615)
                      ...+.+..-.|+.-....|....+. ...|..+.+.++...+..-..   ..++..+..++.-|.+.             
T Consensus       327 ~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~  405 (1088)
T KOG4318|consen  327 IGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAG  405 (1088)
T ss_pred             HHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            1111111112222222222222211 113433444444333332111   11122232223222221             


Q ss_pred             ---------CCHHHHHHHHhccCCC----------------Ccc-----------cHHHHHHHHHhcCChhHHHHHHHHH
Q 036661          307 ---------GDIDSARFLFDGMCDR----------------TRV-----------SWTAMISGYAQKGDLDEALRLFFAM  350 (615)
Q Consensus       307 ---------~~~~~a~~~~~~~~~~----------------~~~-----------~~~~ll~~~~~~~~~~~a~~~~~~~  350 (615)
                               .+.....+......+.                ...           .-+.++..+++.-+..+++..-+..
T Consensus       406 qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~eky  485 (1088)
T KOG4318|consen  406 QGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKY  485 (1088)
T ss_pred             HHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     1111111111111000                001           1233444444444444444333333


Q ss_pred             HHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhc--CCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----C
Q 036661          351 EAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSG--GLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----K  423 (615)
Q Consensus       351 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~  423 (615)
                      ...- -+  ..|..++.-+......+.|..+.++....  .+..+...+..+.+.+.+.+....+..+++++.+     +
T Consensus       486 e~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~  562 (1088)
T KOG4318|consen  486 EDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEP  562 (1088)
T ss_pred             HHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCc
Confidence            2221 11  56788888888888888888888887653  3345666778888888888888889888888776     1


Q ss_pred             C-hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHh--
Q 036661          424 T-VVSWTTMIAGCALNGEFVEALDLFHQMMELDL------------------------------RPNRVTFLAVLQAC--  470 (615)
Q Consensus       424 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------~p~~~~~~~l~~~~--  470 (615)
                      + ..++.-++......|+.+...++++-+...|+                              +|.+.....+.+.+  
T Consensus       563 ~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~k  642 (1088)
T KOG4318|consen  563 LVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYK  642 (1088)
T ss_pred             hHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHh
Confidence            1 22334444555556666666555555544332                              23332222222222  


Q ss_pred             -------------------hccCchHHHHHHHHHHH--HhhC---------CCC---------ChhHHHHHHHHHHhcCC
Q 036661          471 -------------------THAGFLEKGWGYFNLMT--KVYQ---------VNP---------ELNHYSCMADLLGRKGK  511 (615)
Q Consensus       471 -------------------~~~~~~~~a~~~~~~~~--~~~~---------~~~---------~~~~~~~l~~~~~~~g~  511 (615)
                                         .+.|++.++.++.+.--  -+.+         +.|         +......|...|.+.|+
T Consensus       643 e~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~  722 (1088)
T KOG4318|consen  643 ETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGR  722 (1088)
T ss_pred             hccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhH
Confidence                               22222222222211100  0000         000         11223357778999999


Q ss_pred             hHHHHHHHHhCCCCCChhhHHHHHHHHHHh---CChhHHHHHHHHHhccCCCCC---CChHhHHHHHHccCChHHHHHHH
Q 036661          512 LKEALDFVQSMPIKSDAGIWGTLLCACKIH---RNIEIGEYVAYRLFELEPHSA---APYVEMANIYALGGRWDGVANLR  585 (615)
Q Consensus       512 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~  585 (615)
                      ++.|..++.++...|.+.....++..+.+.   -++.++....+++.+..|..+   ..|...+.+..+....+.|.+.+
T Consensus       723 ~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f  802 (1088)
T KOG4318|consen  723 IERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCF  802 (1088)
T ss_pred             HHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHH
Confidence            999999999999888888888888777653   366777778888877766543   34445555566666666889999


Q ss_pred             HHHHhcCcccC
Q 036661          586 TMMKRNQVKKF  596 (615)
Q Consensus       586 ~~~~~~~~~~~  596 (615)
                      .+..++.+..+
T Consensus       803 ~r~eeq~~v~t  813 (1088)
T KOG4318|consen  803 ERLEEQLTVST  813 (1088)
T ss_pred             HHHHHccCCCc
Confidence            99988865443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=6.7e-11  Score=108.53  Aligned_cols=462  Identities=10%  Similarity=0.043  Sum_probs=329.2

Q ss_pred             CChHHHHHHHHHhhcCCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChh-HHHHHH
Q 036661           87 SDIFVQTTMVDMYAKCDRLDCAYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFV-TVMGLT  162 (615)
Q Consensus        87 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll  162 (615)
                      .+...|-...+.=...+++..|..+|+....   ++...|--.+..=.++..+..|..+++.....  -|-+. .|..-+
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~  148 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI  148 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence            3444454444444556778888888888765   56777888888888999999999999988763  34332 233444


Q ss_pred             HHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhH
Q 036661          163 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDS  242 (615)
Q Consensus       163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  242 (615)
                      -.--..|++..|.++|+...+  ..|+...|++.++.=.+-+.++.|..+++...--.|++.+|-.....-.++|....+
T Consensus       149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a  226 (677)
T KOG1915|consen  149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA  226 (677)
T ss_pred             HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence            445567999999999998876  579999999999999999999999999999776689999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHhHHHHHHhc----cCchhhhhhhHHHHHHHHhcCCC-ChhHHHHHHHHHHhcCCHHHHHHHH-
Q 036661          243 LNFYRHMIYDGFRPDVTTVVSLLSSC----VCPEALVQGRLVHSHGIHYGFDL-DVSVINTLISMYSKCGDIDSARFLF-  316 (615)
Q Consensus       243 ~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~-  316 (615)
                      ..+|....+.  ..|...-..++.++    .+...++.|..++.-.++.-... ....|..+...--+-|+-....... 
T Consensus       227 R~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv  304 (677)
T KOG1915|consen  227 RSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV  304 (677)
T ss_pred             HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence            9999887663  12333333333333    35667888888888887763221 1344555554444556655444432 


Q ss_pred             -------hccCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHhh---cccchhh
Q 036661          317 -------DGMCDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV-------TVLSMISGC---GQSGALE  376 (615)
Q Consensus       317 -------~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~---~~~~~~~  376 (615)
                             +.+...   |-.+|-..++.--..|+.+...++|+..+.. ++|-..       .|.-+=-+|   ....+++
T Consensus       305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e  383 (677)
T KOG1915|consen  305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE  383 (677)
T ss_pred             hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence                   222222   4456777777777889999999999998875 555321       121111111   2456888


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHH----HHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661          377 LGKWFDNYACSGGLKDNVMVCNAL----IDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQ  450 (615)
Q Consensus       377 ~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~  450 (615)
                      .+.++++...+ -++....++.-+    ...-.++.++..|.+++.....  |...+|...+..-.+.++++.+..++++
T Consensus       384 rtr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk  462 (677)
T KOG1915|consen  384 RTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK  462 (677)
T ss_pred             HHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999988887 234444444433    3444578899999999988766  7777888888888899999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh
Q 036661          451 MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG  529 (615)
Q Consensus       451 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~  529 (615)
                      .++-+ +-|..+|......-...|+.+.|..+|.-+.....+.-....|.+.++.=...|.++.|..+++++. ..+...
T Consensus       463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k  541 (677)
T KOG1915|consen  463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK  541 (677)
T ss_pred             HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence            99864 4455788888888888999999999999998643333334467777777788999999999999987 555556


Q ss_pred             hHHHHHHHHH-----HhC-----------ChhHHHHHHHHHhcc
Q 036661          530 IWGTLLCACK-----IHR-----------NIEIGEYVAYRLFEL  557 (615)
Q Consensus       530 ~~~~l~~~~~-----~~~-----------~~~~A~~~~~~~~~~  557 (615)
                      +|...+..-.     +.+           +...|.++|+++...
T Consensus       542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~  585 (677)
T KOG1915|consen  542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY  585 (677)
T ss_pred             HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence            7776664433     334           567888888888653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.62  E-value=3.9e-13  Score=131.13  Aligned_cols=275  Identities=9%  Similarity=0.005  Sum_probs=185.8

Q ss_pred             cCCHHHHHHHHhccCCC--Ccc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHhhcccchhhHHHH
Q 036661          306 CGDIDSARFLFDGMCDR--TRV-SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVL--SMISGCGQSGALELGKW  380 (615)
Q Consensus       306 ~~~~~~a~~~~~~~~~~--~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~  380 (615)
                      .|+++.|++.+....+.  ++. .|........+.|+++.|...+.++.+.  .|+.....  .....+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            57777777766655332  122 2222233446677777777777777653  44443222  22455667777777777


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCC---Ch--------HHHHHHHHHHHhcCChHHHHHHHH
Q 036661          381 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK---TV--------VSWTTMIAGCALNGEFVEALDLFH  449 (615)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~a~~~~~  449 (615)
                      .++.+.+.. +.++..+..+...|.+.|++++|.+++..+.+.   +.        .+|..++.......+.+...++++
T Consensus       175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            777777665 556667777777888888888888777766642   11        123333443444455666666777


Q ss_pred             HHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-
Q 036661          450 QMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-  527 (615)
Q Consensus       450 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-  527 (615)
                      .+... .+.++.....+..++...|+.++|.+.+++..+   .+|+....  ++......++.+++++.+++.. ..|+ 
T Consensus       254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~  327 (398)
T PRK10747        254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT  327 (398)
T ss_pred             hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence            66543 245667778888888889999999988888874   24554322  2333345588888888888876 4454 


Q ss_pred             hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          528 AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ......++..|...+++++|.+.++++++..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4466788888889999999999999999999884 5567889999999999999999887654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=1.2e-11  Score=113.23  Aligned_cols=395  Identities=11%  Similarity=0.081  Sum_probs=265.3

Q ss_pred             HHHccCCHHHHHHHHHhcccC-CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhh
Q 036661          199 AYAKCNDLKMAELVFRGIEEG-LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQG  277 (615)
Q Consensus       199 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  277 (615)
                      -=...+++..|..+|+..... ..+...|-..+..-.++..+..|..++++.+..-+..|..-| .-+..=-..|++..|
T Consensus        82 wEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ymEE~LgNi~ga  160 (677)
T KOG1915|consen   82 WEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIYMEEMLGNIAGA  160 (677)
T ss_pred             HHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHHHHHHhcccHHH
Confidence            334456677777777776654 556777777777777777788888888777664322222222 222223346778888


Q ss_pred             hHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc--CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036661          278 RLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM--CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE  355 (615)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  355 (615)
                      .++|..-.+.  .|+...+.+.++.-.+-+.++.|..++++.  +.|++..|-...+--.++|....+..+|....+.  
T Consensus       161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--  236 (677)
T KOG1915|consen  161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--  236 (677)
T ss_pred             HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence            8888776654  688888888888888888888888888885  6778888888888778888888888888876653  


Q ss_pred             CCCHH----HHHHHHHhhcccchhhHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHHHHHH--------hcCCC
Q 036661          356 VPDLV----TVLSMISGCGQSGALELGKWFDNYACSGGLKD-NVMVCNALIDMYSKCGSIGDARELF--------YALPE  422 (615)
Q Consensus       356 ~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~~  422 (615)
                      -.|..    .+.++..-=.+...++.|.-++....+.-.+. ....|..+...--+-|+.....+..        +....
T Consensus       237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~  316 (677)
T KOG1915|consen  237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS  316 (677)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence            12222    23333333345667888888888777643221 2445555554444556554443332        12222


Q ss_pred             C---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHH---H-HH-H---hhccCchHHHHHHHHHHHHh
Q 036661          423 K---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV--TFLA---V-LQ-A---CTHAGFLEKGWGYFNLMTKV  489 (615)
Q Consensus       423 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~---l-~~-~---~~~~~~~~~a~~~~~~~~~~  489 (615)
                      .   |-.+|--.+..-...|+.+...++|++.+.. ++|-..  .|..   | ++ +   -....+.+.+.++++...+ 
T Consensus       317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-  394 (677)
T KOG1915|consen  317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-  394 (677)
T ss_pred             hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence            2   4457777777777778888888888888875 455321  1211   1 11 1   1246678888888888874 


Q ss_pred             hCCCCChhHHHH----HHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661          490 YQVNPELNHYSC----MADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP  564 (615)
Q Consensus       490 ~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  564 (615)
                       -++....+|..    .+....++.+...|.+++-.+. ..|...++...+..-.+.++++....+|++.++-.|.+..+
T Consensus       395 -lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~  473 (677)
T KOG1915|consen  395 -LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA  473 (677)
T ss_pred             -hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence             34444444443    3344457788888888887766 67778888888888888888888888888888888888888


Q ss_pred             hHhHHHHHHccCChHHHHHHHHHHHhcCcccCCceeE
Q 036661          565 YVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSL  601 (615)
Q Consensus       565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  601 (615)
                      |...+.+-...|+.+.|+.+|+...+++....|..-|
T Consensus       474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw  510 (677)
T KOG1915|consen  474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLW  510 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence            8888888888888888888888888877766664433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.60  E-value=4.8e-10  Score=106.95  Aligned_cols=546  Identities=12%  Similarity=0.073  Sum_probs=285.1

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHh
Q 036661           21 QWNSQIREAVDKNEAHKALLLFRRMKKN-DIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMY   99 (615)
Q Consensus        21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (615)
                      .|-.-++.+.++|+.......|++.... .+.-....|...+......+-++.+.+++++-++..    +..-+..+..+
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L  179 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL  179 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence            4888888999999999999999887763 233345578888888888888889999999888643    33466678888


Q ss_pred             hcCCChhHHHHhhccCCCC----------CchhHHHHHHHHHhcCChHHHH---HHHHHhHHcCCcCCh--hHHHHHHHH
Q 036661          100 AKCDRLDCAYKLFDKMPDR----------DVASWNAMIVGFAQMGFLEKVL---CLFYNMRLVGIQADF--VTVMGLTQA  164 (615)
Q Consensus       100 ~~~g~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~---~~~~~m~~~~~~p~~--~~~~~ll~~  164 (615)
                      +..+++++|-+.+..+...          +-..|+.+-...+++-+.-.-+   .++..+..  .-+|.  ..|.+|..-
T Consensus       180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdY  257 (835)
T KOG2047|consen  180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADY  257 (835)
T ss_pred             HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHH
Confidence            8889999988888877632          3334666655555544332222   22222222  23333  236777777


Q ss_pred             HHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC--CCCcchHHHHHHHHhc--CCChh
Q 036661          165 AIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG--LRTVVSWNSIIGGCTY--GDKFD  240 (615)
Q Consensus       165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~--~~~~~  240 (615)
                      |.+.|.++.|..++++.+..-  .++.-|+.+.++|+....-.-+..+=-.-.+.  ..+...+...+..+-.  .+.. 
T Consensus       258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~-  334 (835)
T KOG2047|consen  258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP-  334 (835)
T ss_pred             HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc-
Confidence            778888888888877776542  23444555555555432211111111000000  1111111111111000  0000 


Q ss_pred             hHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcC-----CCChhHHHHHHHHHHhcCCHHHHHHH
Q 036661          241 DSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGF-----DLDVSVINTLISMYSKCGDIDSARFL  315 (615)
Q Consensus       241 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~  315 (615)
                         -+++...-..-+-+..++..-+.  ...|+..+....+.++++.--     -.....+..+...|-+.|+++.|..+
T Consensus       335 ---~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi  409 (835)
T KOG2047|consen  335 ---LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI  409 (835)
T ss_pred             ---hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence               00111111111122222222221  112333333344444433210     01123466677777778888888888


Q ss_pred             HhccCCCCcc-------cHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----------CC------CHHHHHHHHHhhcc
Q 036661          316 FDGMCDRTRV-------SWTAMISGYAQKGDLDEALRLFFAMEAAGE-----------VP------DLVTVLSMISGCGQ  371 (615)
Q Consensus       316 ~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~ll~~~~~  371 (615)
                      |++..+-+-.       .|......-.++.+++.|+++++......-           ++      +...|...+..-..
T Consensus       410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs  489 (835)
T KOG2047|consen  410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES  489 (835)
T ss_pred             HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence            8777444333       344444444456667777777666543211           11      11223334444445


Q ss_pred             cchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC----CCh-HHHHHHHHHHHh---cCChHH
Q 036661          372 SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE----KTV-VSWTTMIAGCAL---NGEFVE  443 (615)
Q Consensus       372 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~  443 (615)
                      .|-++....+++.+.+..+... .+.......+-...-++++.+++++-..    |++ ..|+..+..+.+   ....+.
T Consensus       490 ~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr  568 (835)
T KOG2047|consen  490 LGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER  568 (835)
T ss_pred             hccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence            5667777778888777654322 2222233344555667888888887554    444 367766665543   246788


Q ss_pred             HHHHHHHHHHcCCCCCHHH--HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHH
Q 036661          444 ALDLFHQMMELDLRPNRVT--FLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL--NHYSCMADLLGRKGKLKEALDFV  519 (615)
Q Consensus       444 a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~  519 (615)
                      |..+|++..+ |.+|...-  |......-.+-|....|..+++++..  ++++..  .+|+..+.--...=-.....+++
T Consensus       569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iY  645 (835)
T KOG2047|consen  569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIY  645 (835)
T ss_pred             HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence            8888888888 56665432  22222223345777778888887764  443332  34444443222111112223333


Q ss_pred             HhCC-CCCChhhHHH---HHHHHHHhCChhHHHHHHHHHhcc-CCC-CCCChHhHHHHHHccCChHHHHHH
Q 036661          520 QSMP-IKSDAGIWGT---LLCACKIHRNIEIGEYVAYRLFEL-EPH-SAAPYVEMANIYALGGRWDGVANL  584 (615)
Q Consensus       520 ~~~~-~~p~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~~A~~~  584 (615)
                      +++. .-|+...-..   ....-.+.|..+.|..+|...-++ +|. ++..|...-..-.+.|+-+.-.++
T Consensus       646 ekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM  716 (835)
T KOG2047|consen  646 EKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM  716 (835)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence            3332 2233322211   222234567777777777666654 343 455666666666666764444443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=5.4e-12  Score=118.31  Aligned_cols=277  Identities=9%  Similarity=0.024  Sum_probs=155.3

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036661          290 DLDVSVINTLISMYSKCGDIDSARFLFDGMCDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMI  366 (615)
Q Consensus       290 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  366 (615)
                      ..+..+...-.+-+...+++.+..++++.+.+.   +...+..-|.++...|+..+-..+-.++.+. .|-.+.+|-++.
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg  319 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG  319 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence            445555666666666777777777777766333   3344555566666777766666666666654 344455666666


Q ss_pred             HhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHH
Q 036661          367 SGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVE  443 (615)
Q Consensus       367 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~  443 (615)
                      --|...|..++|.++|.....-+ +.-...|-.+...|+-.|..+.|...+....+   .....+--+..-|.+.++.+.
T Consensus       320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL  398 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL  398 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence            55666666666666666654433 12223455566666666666666655543332   111122223444556666666


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhh-CCCC----ChhHHHHHHHHHHhcCChHHHHHH
Q 036661          444 ALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVY-QVNP----ELNHYSCMADLLGRKGKLKEALDF  518 (615)
Q Consensus       444 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~  518 (615)
                      |.++|.+..... +.|+...+-+.-.....+.+.+|..+|+.....- .+.+    -..+++.|+.+|.+.+++++|+..
T Consensus       399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~  477 (611)
T KOG1173|consen  399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY  477 (611)
T ss_pred             HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence            666666666531 2333455555555555566666666666654210 0001    123455566666666666666666


Q ss_pred             HHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661          519 VQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA  569 (615)
Q Consensus       519 ~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  569 (615)
                      +++..  .+.+..++..++-.+...|+++.|...|.+++-+.|++..+-..|.
T Consensus       478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK  530 (611)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            66654  3334556666666666666666666666666666666544444443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.59  E-value=6.4e-12  Score=122.68  Aligned_cols=248  Identities=11%  Similarity=-0.047  Sum_probs=168.8

Q ss_pred             HhcCCHHHHHHHHhccCCC--CcccHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHH
Q 036661          304 SKCGDIDSARFLFDGMCDR--TRVSWT--AMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGK  379 (615)
Q Consensus       304 ~~~~~~~~a~~~~~~~~~~--~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  379 (615)
                      .+.|+++.|...+.++.+.  +.....  .....+...|+++.|...++++.+.. +-+......+...+.+.|+++.+.
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence            4555555555555555222  221111  22345555666666666666665543 334445555556666666666666


Q ss_pred             HHHHHHHhcCCCCch-------HHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHH
Q 036661          380 WFDNYACSGGLKDNV-------MVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFH  449 (615)
Q Consensus       380 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~  449 (615)
                      .++..+.+.+..++.       ..|..++.......+.+...++++.++.   .++.....+...+...|+.++|.+.++
T Consensus       208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~  287 (398)
T PRK10747        208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL  287 (398)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            666666654433222       1223333333444566777777777765   477788889999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCh
Q 036661          450 QMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA  528 (615)
Q Consensus       450 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~  528 (615)
                      +..+.  +|+....  ++.+....++.+++++..+...+.  .+-|...+..++..+.+.|++++|.+.|++.. ..|+.
T Consensus       288 ~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~  361 (398)
T PRK10747        288 DGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA  361 (398)
T ss_pred             HHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence            99884  5665333  233344568999999999998864  34445667789999999999999999999987 78998


Q ss_pred             hhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661          529 GIWGTLLCACKIHRNIEIGEYVAYRLFELE  558 (615)
Q Consensus       529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  558 (615)
                      ..+..+...+.+.|+.++|.+++++.+.+-
T Consensus       362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        362 YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            888889999999999999999999998754

>TIGR00540 hemY_coli hemY protein

Probab=99.58  E-value=2.1e-12  Score=126.89  Aligned_cols=278  Identities=10%  Similarity=-0.025  Sum_probs=141.8

Q ss_pred             cCCHHHHHHHHhccCCC--C-cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHhhcccchhhHHHH
Q 036661          306 CGDIDSARFLFDGMCDR--T-RVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDL--VTVLSMISGCGQSGALELGKW  380 (615)
Q Consensus       306 ~~~~~~a~~~~~~~~~~--~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~  380 (615)
                      .|+++.|.+.+....+.  + ...+-....+..+.|+++.|.+.+.+..+..  |+.  .........+...|+++.|..
T Consensus        97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~  174 (409)
T TIGR00540        97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH  174 (409)
T ss_pred             CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence            45555555555444221  1 1122222334444555555555555554432  222  122223444445555555555


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHH----HHHHHHHhcCChHHHHHHHHHHHH
Q 036661          381 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWT----TMIAGCALNGEFVEALDLFHQMME  453 (615)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~  453 (615)
                      .++.+.+.. +.++.++..+...+...|+++.|.+.+..+.+   .+...+.    .........+..+.....+..+.+
T Consensus       175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~  253 (409)
T TIGR00540       175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK  253 (409)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            555555544 33444555555555555666555555555443   1211111    111111222222222333333333


Q ss_pred             cC---CCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhCC-CCC
Q 036661          454 LD---LRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNH---YSCMADLLGRKGKLKEALDFVQSMP-IKS  526 (615)
Q Consensus       454 ~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~p  526 (615)
                      ..   .+.+...+..+...+...|+.++|.+.+++..+.   .|+...   ...........++.+.+.+.+++.. ..|
T Consensus       254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p  330 (409)
T TIGR00540       254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD  330 (409)
T ss_pred             HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence            21   1125556666666777777777777777776643   233221   1111112223456666666666654 333


Q ss_pred             Ch---hhHHHHHHHHHHhCChhHHHHHHH--HHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          527 DA---GIWGTLLCACKIHRNIEIGEYVAY--RLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       527 ~~---~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      +.   ....++++.+.+.|++++|.+.++  .+++..|++ ..+..++.++.+.|+.++|.++|++...
T Consensus       331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33   455677777777888888888888  466677764 4466778888888888888888876543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=2.2e-11  Score=111.40  Aligned_cols=255  Identities=11%  Similarity=0.088  Sum_probs=195.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhcC
Q 036661          331 ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL--KDNVMVCNALIDMYSKCG  408 (615)
Q Consensus       331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g  408 (615)
                      ..++....+.+++.+-.+.....|.+-+...-+....+.....+++.|+.+|+++.+...  -.+..+|..++-.-....
T Consensus       234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s  313 (559)
T KOG1155|consen  234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS  313 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence            345555556777777777777777666655555555566677788889988888887641  124566666653332222


Q ss_pred             ChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661          409 SIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMT  487 (615)
Q Consensus       409 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  487 (615)
                      ++.--....-.+.+-.+.|...+..-|.-.++.++|..+|++..+.  .|.. ..|..+..-|....+...|.+-++++.
T Consensus       314 kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv  391 (559)
T KOG1155|consen  314 KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV  391 (559)
T ss_pred             HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence            2222112222233334556667777888889999999999999986  4554 578888889999999999999999998


Q ss_pred             HhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661          488 KVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP  564 (615)
Q Consensus       488 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  564 (615)
                         .+.| |-..|-.|+++|.-.+...-|+-+|+++. .+| |+..|..|+.+|.+.++.++|++-|++++....-+..+
T Consensus       392 ---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~  468 (559)
T KOG1155|consen  392 ---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA  468 (559)
T ss_pred             ---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence               4444 56789999999999999999999999987 444 67799999999999999999999999999998888899


Q ss_pred             hHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          565 YVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       565 ~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      +..||++|.+.++.++|.+++++-.+
T Consensus       469 l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  469 LVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999988876

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=4e-13  Score=128.48  Aligned_cols=277  Identities=13%  Similarity=0.044  Sum_probs=220.6

Q ss_pred             CHHHHHHHHhccCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHhhcccchhhHHHHHH
Q 036661          308 DIDSARFLFDGMCDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE--VPDLVTVLSMISGCGQSGALELGKWFD  382 (615)
Q Consensus       308 ~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~  382 (615)
                      ...+|...|..++..   .......+..+|...+++++|.++|+.+.+...  .-+..+|.+.+..+-+.    -+...+
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence            467888888886322   233556778899999999999999999887531  12556777777654322    222222


Q ss_pred             -HHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036661          383 -NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKT---VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP  458 (615)
Q Consensus       383 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p  458 (615)
                       +.+.+.. +.++.+|.++..+|.-+++.+.|++.|++..+-|   ..+|..+..-+.....+|.|...|+..+..  .|
T Consensus       410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~  486 (638)
T KOG1126|consen  410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP  486 (638)
T ss_pred             HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence             2233333 6788999999999999999999999999988743   467888888888899999999999998864  55


Q ss_pred             CH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHH
Q 036661          459 NR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTL  534 (615)
Q Consensus       459 ~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l  534 (615)
                      .. ..|..+...|.++++++.|+-.|+++.   .+.|.. .....++..+.+.|+.++|+++++++.  .+.++......
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            44 578888889999999999999999998   667764 455668889999999999999999987  44456666677


Q ss_pred             HHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          535 LCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       535 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      +..+...+++++|++.++++-++-|++..++..+|.+|.+.|+.+.|+.-|--+.+-.++
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            778888999999999999999999999999999999999999999999999888776654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=4.6e-13  Score=128.08  Aligned_cols=281  Identities=11%  Similarity=-0.001  Sum_probs=222.4

Q ss_pred             hhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCC------CcccHHHHHHHHHhcCChhHHHHH
Q 036661          273 ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDR------TRVSWTAMISGYAQKGDLDEALRL  346 (615)
Q Consensus       273 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a~~~  346 (615)
                      +..+|...|..+.+ .+.-+..+...+..+|...+++++|+++|+.+.+.      +...|.+.+..+-+.    -++..
T Consensus       334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence            45667777777333 33444577888999999999999999999998332      556788887765442    23333


Q ss_pred             HH-HHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCCh
Q 036661          347 FF-AMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTV  425 (615)
Q Consensus       347 ~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  425 (615)
                      +. ++.+. .+-.+.+|-.+..+|.-+++.+.|.+.|++.+..+ +....+|+.+..-+.....++.|...|+.....++
T Consensus       409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            32 33333 35677899999999999999999999999998765 45788899999999999999999999999888666


Q ss_pred             H---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHH
Q 036661          426 V---SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCM  502 (615)
Q Consensus       426 ~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  502 (615)
                      .   +|-.+...|.+.++++.|+-.|+++.+.+ +-|.+....+...+.+.|+.++|+.+++++..  --+.++..--..
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~  563 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHR  563 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHH
Confidence            5   55667889999999999999999999864 34557788888899999999999999999983  223344444456


Q ss_pred             HHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661          503 ADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA  563 (615)
Q Consensus       503 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  563 (615)
                      +..+...+++++|+..+++++ .-| +...+..++..|.+.|+.+.|+..|--+.+++|.-..
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            788889999999999999997 445 4557788889999999999999999999999997433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.7e-10  Score=105.73  Aligned_cols=244  Identities=11%  Similarity=0.065  Sum_probs=107.5

Q ss_pred             CchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCC------cccHHHHHHHHHhcCChhHH
Q 036661          270 CPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRT------RVSWTAMISGYAQKGDLDEA  343 (615)
Q Consensus       270 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~ll~~~~~~~~~~~a  343 (615)
                      .....+.+.+-.......|++.+...-+....+.....|++.|+.+|+++.+.|      ..+|+.++-.  ++.+-  .
T Consensus       239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~s--k  314 (559)
T KOG1155|consen  239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKS--K  314 (559)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhH--H
Confidence            333444555555555555555554444444444445555555555555553322      2233333322  11111  1


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-
Q 036661          344 LRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-  422 (615)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-  422 (615)
                      +..+.+-.-.--+-.+.|...+..-|+-.++.++|..+|+...+.+ +.....++.+.+-|....+...|.+-++...+ 
T Consensus       315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi  393 (559)
T KOG1155|consen  315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI  393 (559)
T ss_pred             HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence            1111111100011222233333344444445555555555554444 33344444445555555555555555554433 


Q ss_pred             --CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHH
Q 036661          423 --KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYS  500 (615)
Q Consensus       423 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  500 (615)
                        .|-..|-.|.++|.-.+.+.=|+-+|++..+.. +.|+..|..|..+|.+.++.++|++.|.+...-  -..+...+.
T Consensus       394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~l~  470 (559)
T KOG1155|consen  394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSALV  470 (559)
T ss_pred             CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHHHH
Confidence              233445555555555555555555555555431 223345555555555555555555555555431  112233444


Q ss_pred             HHHHHHHhcCChHHHHHHHHh
Q 036661          501 CMADLLGRKGKLKEALDFVQS  521 (615)
Q Consensus       501 ~l~~~~~~~g~~~~A~~~~~~  521 (615)
                      .|+++|.+.++.++|...+++
T Consensus       471 ~LakLye~l~d~~eAa~~yek  491 (559)
T KOG1155|consen  471 RLAKLYEELKDLNEAAQYYEK  491 (559)
T ss_pred             HHHHHHHHHHhHHHHHHHHHH
Confidence            455555555555555554444

>TIGR00540 hemY_coli hemY protein

Probab=99.56  E-value=1.1e-11  Score=121.67  Aligned_cols=254  Identities=12%  Similarity=-0.000  Sum_probs=162.7

Q ss_pred             HHHHHhcCCHHHHHHHHhccC--CCCcc--cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchh
Q 036661          300 ISMYSKCGDIDSARFLFDGMC--DRTRV--SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGAL  375 (615)
Q Consensus       300 ~~~~~~~~~~~~a~~~~~~~~--~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  375 (615)
                      ..+....|+.+.|.+.+.+..  .|+..  ........+...|+++.|...++.+.+.. +-+......+...+...|++
T Consensus       125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~  203 (409)
T TIGR00540       125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAW  203 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhH
Confidence            344455556666655555541  12221  22223555556666666666666666553 23444555566666666666


Q ss_pred             hHHHHHHHHHHhcCCCCchHHHH-------HHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHH
Q 036661          376 ELGKWFDNYACSGGLKDNVMVCN-------ALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEAL  445 (615)
Q Consensus       376 ~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~  445 (615)
                      +.+.+.+..+.+.+..+......       .++..-......+...+.++..+.   .++..+..+...+...|++++|.
T Consensus       204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~  283 (409)
T TIGR00540       204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ  283 (409)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence            66666666666654332222111       111111222234455556666654   47788888999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHH--H-HHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh-
Q 036661          446 DLFHQMMELDLRPNRVT--F-LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQS-  521 (615)
Q Consensus       446 ~~~~~~~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-  521 (615)
                      +.+++..+.  .||...  + ..........++.+.+.+.+++..+...-.|+.....+++..+.+.|++++|.+.|++ 
T Consensus       284 ~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a  361 (409)
T TIGR00540       284 EIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNV  361 (409)
T ss_pred             HHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence            999999986  455432  1 1122233445788889999988886433333225677899999999999999999994 


Q ss_pred             -CC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661          522 -MP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE  556 (615)
Q Consensus       522 -~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  556 (615)
                       .. ..|+...+..++..+.+.|+.++|.+++++.+.
T Consensus       362 ~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       362 AACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             43 678888888999999999999999999999865

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=3.6e-11  Score=110.81  Aligned_cols=402  Identities=10%  Similarity=-0.053  Sum_probs=259.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhHHcCCcCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCcc-chHHHHHHHH
Q 036661          123 WNAMIVGFAQMGFLEKVLCLFYNMRLVGIQAD-FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADV-SVCNTWISAY  200 (615)
Q Consensus       123 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~  200 (615)
                      +-....-|-++|++++|++++.+.++  ..|| +..|.....+|...|+|+.+.+--...++.  .|+- ..+..-.+++
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~  193 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH  193 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence            44455667788999999999999988  5688 667788888888999999988887777764  4543 3566667778


Q ss_pred             HccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCCh--------hhHHHHHHHHHH-C--CCCCCHHhHHHHHHhcc
Q 036661          201 AKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKF--------DDSLNFYRHMIY-D--GFRPDVTTVVSLLSSCV  269 (615)
Q Consensus       201 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~--~~~p~~~~~~~ll~~~~  269 (615)
                      -..|++++|+.=..-           .++...+-...-.        ..+....++-.. .  .+.|+.....+.+..+.
T Consensus       194 E~lg~~~eal~D~tv-----------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~  262 (606)
T KOG0547|consen  194 EQLGKFDEALFDVTV-----------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH  262 (606)
T ss_pred             HhhccHHHHHHhhhH-----------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence            888888887532211           1111111111111        112222222222 1  23455555444444432


Q ss_pred             Cch------hhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc--------CCC--Ccc------cH
Q 036661          270 CPE------ALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM--------CDR--TRV------SW  327 (615)
Q Consensus       270 ~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~--~~~------~~  327 (615)
                      ..-      ..+.+...+....+.-.....             ..+..|...+.+-        ...  |..      +.
T Consensus       263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~-------------e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al  329 (606)
T KOG0547|consen  263 ADPKPLFDNKSDKSDAALAEALEALEKGLE-------------EGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEAL  329 (606)
T ss_pred             ccccccccCCCccchhhHHHHHHHHHhhCc-------------hhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Confidence            110      001111111111100000000             0122222222111        111  111      12


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 036661          328 TAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC  407 (615)
Q Consensus       328 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  407 (615)
                      +....-+.-.|+.-.|..-|+..+.....++. .|..+...|....+.++....|+...+.+ +-++.+|..-.+++.-.
T Consensus       330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL  407 (606)
T KOG0547|consen  330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLL  407 (606)
T ss_pred             HHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHH
Confidence            22222234578888999999998887543333 27777778899999999999999998876 66677788888888888


Q ss_pred             CChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHH
Q 036661          408 GSIGDARELFYALPEK---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFN  484 (615)
Q Consensus       408 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  484 (615)
                      ++++.|..-|++...-   ++..|-.+..+..+.++++++...|++.+.. ++.-+..|+.....+..+++++.|.+.|+
T Consensus       408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD  486 (606)
T KOG0547|consen  408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYD  486 (606)
T ss_pred             HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence            9999999999988773   4556777777777899999999999999987 34445799999999999999999999999


Q ss_pred             HHHHhhCCCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHH
Q 036661          485 LMTKVYQVNPE---------LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYR  553 (615)
Q Consensus       485 ~~~~~~~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~  553 (615)
                      ..+.   +.|+         +.+...++..-. .+++..|.++++++. ..|. ...+..+...-.+.|+.++|+++|++
T Consensus       487 ~ai~---LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk  562 (606)
T KOG0547|consen  487 KAIE---LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK  562 (606)
T ss_pred             HHHh---hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9883   3443         222222332222 389999999999987 5554 45888999999999999999999999


Q ss_pred             HhccCC
Q 036661          554 LFELEP  559 (615)
Q Consensus       554 ~~~~~p  559 (615)
                      ...+-.
T Consensus       563 sa~lAr  568 (606)
T KOG0547|consen  563 SAQLAR  568 (606)
T ss_pred             HHHHHH
Confidence            987643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.54  E-value=2e-14  Score=134.11  Aligned_cols=227  Identities=15%  Similarity=0.116  Sum_probs=105.8

Q ss_pred             HHHHhhcccchhhHHHHHHHHHHhcC-CCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcC
Q 036661          364 SMISGCGQSGALELGKWFDNYACSGG-LKDNVMVCNALIDMYSKCGSIGDARELFYALPEK---TVVSWTTMIAGCALNG  439 (615)
Q Consensus       364 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~  439 (615)
                      .+...+...|++++|.+++....... .+.+...+..+.......++++.|.+.++++...   ++..+..++.. ...+
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            45777889999999999996654443 3556666777788888899999999999998873   34566667766 6889


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036661          440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFV  519 (615)
Q Consensus       440 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  519 (615)
                      ++++|.+++++..+.  .+++..+..++..+...++++++..+++.+......+++...|..++..+.+.|+.++|++.+
T Consensus        92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999888765  466677788888999999999999999998765445667888999999999999999999999


Q ss_pred             HhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          520 QSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       520 ~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +++. ..| +......++..+...|+.+++.++++...+..|+++..+..++.+|...|++++|+.++++..+..+
T Consensus       170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p  245 (280)
T PF13429_consen  170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP  245 (280)
T ss_dssp             HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence            9997 555 5678888999999999999999999999998899999999999999999999999999999987654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=1e-10  Score=103.35  Aligned_cols=447  Identities=12%  Similarity=0.028  Sum_probs=208.2

Q ss_pred             hcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHH
Q 036661           66 KLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCL  142 (615)
Q Consensus        66 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~  142 (615)
                      ...++..|..+++.....+-+....+-.=+...+.+.|++++|...+..+.+   ++...+-.|..++--.|.+.+|..+
T Consensus        34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~  113 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI  113 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence            3444555555544443332221111111123334455555555555554432   2333444444444444555555554


Q ss_pred             HHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCC
Q 036661          143 FYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRT  222 (615)
Q Consensus       143 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  222 (615)
                      -....     -++..-..++...-+.++-+......+.+.+.     ..-..+|.......-.+.+|.+++.++....|.
T Consensus       114 ~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e  183 (557)
T KOG3785|consen  114 AEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE  183 (557)
T ss_pred             HhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            33321     12222333344444455555444444444321     123334444444455677888888887766666


Q ss_pred             cchHHHHH-HHHhcCCChhhHHHHHHHHHHCCCCCCHHh-HHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHH
Q 036661          223 VVSWNSII-GGCTYGDKFDDSLNFYRHMIYDGFRPDVTT-VVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLI  300 (615)
Q Consensus       223 ~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  300 (615)
                      -...|..+ -+|.+..-++-+.++++-.++.  .||+.. .+.......+.=+...|++-.+.+.+.+-..     -..+
T Consensus       184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~  256 (557)
T KOG3785|consen  184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFI  256 (557)
T ss_pred             hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhH
Confidence            66666554 3455666667677777666553  144322 2222111122212222222223322222100     0011


Q ss_pred             HHHHhc-----CCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchh
Q 036661          301 SMYSKC-----GDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGAL  375 (615)
Q Consensus       301 ~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  375 (615)
                      ..+++.     ..-+.|++++-.+.+.-+.+-..++--|.++++..+|..+.+++.-  ..|-......+..+       
T Consensus       257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a-------  327 (557)
T KOG3785|consen  257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA-------  327 (557)
T ss_pred             HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH-------
Confidence            111111     1123333333222221122222233334444444444444443321  11111111111111       


Q ss_pred             hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661          376 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KTVVSWTTMIAGCALNGEFVEALDLFHQ  450 (615)
Q Consensus       376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~  450 (615)
                                             .+.+-......+.-|...|+-.-+     ..+.-..++...+.-..++++.+.++..
T Consensus       328 -----------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS  384 (557)
T KOG3785|consen  328 -----------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS  384 (557)
T ss_pred             -----------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   011111111123334444443322     1223344555566666677777777777


Q ss_pred             HHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCCCCCChh
Q 036661          451 MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHY-SCMADLLGRKGKLKEALDFVQSMPIKSDAG  529 (615)
Q Consensus       451 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~  529 (615)
                      ...- +..|......+..+++..|.+.+|.++|-++... .+ .+..+| ..|+++|.+.|+++-|++++-++..+.+..
T Consensus       385 i~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~f  461 (557)
T KOG3785|consen  385 IESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERF  461 (557)
T ss_pred             HHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHH
Confidence            6664 2333333334677778888888888888777621 22 223333 346688888888888888887776333333


Q ss_pred             -hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661          530 -IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPY  565 (615)
Q Consensus       530 -~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  565 (615)
                       .+..+.+-|.+.+.+--|-+.|..+..++|. |+-|
T Consensus       462 sLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW  497 (557)
T KOG3785|consen  462 SLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW  497 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc
Confidence             3344456777888888888888888777776 4444

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.51  E-value=2.9e-12  Score=117.00  Aligned_cols=199  Identities=12%  Similarity=0.023  Sum_probs=167.2

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661          392 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ  468 (615)
Q Consensus       392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  468 (615)
                      .....+..+...+...|++++|.+.+++...   .+...+..+...+...|++++|.+.+++..+.+ +.+...+..+..
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~  107 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT  107 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            3456677788889999999999999987654   346688888999999999999999999999874 445567888888


Q ss_pred             HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhH
Q 036661          469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEI  546 (615)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~  546 (615)
                      .+...|++++|...++++......+.....+..++.++...|++++|...+++.. ..| +...+..+...+...|++++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999998542223344567778999999999999999999886 334 45677888899999999999


Q ss_pred             HHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          547 GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       547 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      |...++++++..|.++..+..++.++...|++++|..+.+.+...
T Consensus       188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999999999998988888999999999999999999998887654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.1e-10  Score=109.69  Aligned_cols=261  Identities=14%  Similarity=0.052  Sum_probs=209.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 036661          327 WTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK  406 (615)
Q Consensus       327 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (615)
                      ......-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+.+.- |..+.+|-++.--|.-
T Consensus       247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~  324 (611)
T KOG1173|consen  247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLM  324 (611)
T ss_pred             HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHH
Confidence            3344455667889999999999988763 5666666666667777777766666666666543 6778889999999999


Q ss_pred             cCChHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHH
Q 036661          407 CGSIGDARELFYALPEKT---VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYF  483 (615)
Q Consensus       407 ~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  483 (615)
                      .|+..+|++.|.+...-|   ...|-.+..+|+-.|..+.|+..+...-+. ++-....+..+..-|.+.++...|.++|
T Consensus       325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff  403 (611)
T KOG1173|consen  325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF  403 (611)
T ss_pred             hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence            999999999999876633   358999999999999999999999888774 2222233445566788899999999999


Q ss_pred             HHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCC----ChhhHHHHHHHHHHhCChhHHHHHHHH
Q 036661          484 NLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-----IKS----DAGIWGTLLCACKIHRNIEIGEYVAYR  553 (615)
Q Consensus       484 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~  553 (615)
                      ..+.   ++.|+ +.+.+.++-.....+.+.+|..+|+...     ..+    -..++..|+.+|++.+.+++|+..+++
T Consensus       404 ~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~  480 (611)
T KOG1173|consen  404 KQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK  480 (611)
T ss_pred             HHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence            9988   55554 5677778888888899999999998765     111    124678899999999999999999999


Q ss_pred             HhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          554 LFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       554 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ++.+.|.++.++.++|-+|...|+.+.|++.|.+.+-..+
T Consensus       481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p  520 (611)
T KOG1173|consen  481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP  520 (611)
T ss_pred             HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999998876443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.50  E-value=9.2e-11  Score=105.80  Aligned_cols=285  Identities=14%  Similarity=0.079  Sum_probs=169.5

Q ss_pred             CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 036661          236 GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFL  315 (615)
Q Consensus       236 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  315 (615)
                      .|++.+|.+++.+-.+.+-.| ...|..-..+.-..|+.+.+.+++.+..+..-.++..+.-+........|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            566666666666655544322 2334444455556666666666666666553344555556666666777777777666


Q ss_pred             Hhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCC
Q 036661          316 FDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKD  392 (615)
Q Consensus       316 ~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  392 (615)
                      ++++   .+.++........+|.+.|++.....++.++.+.|.-.+...-                            ..
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l  227 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL  227 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence            5554   4445566667777777777777777777777776654333210                            00


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036661          393 NVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQA  469 (615)
Q Consensus       393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  469 (615)
                      -..+++.+++-....+..+.-...++..+.   .++..-..++.-+.+.|+.++|.++.++..+++..|+    ....-.
T Consensus       228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~  303 (400)
T COG3071         228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP  303 (400)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence            112344444444444444455555655554   3566666667777777777777777777777665555    112223


Q ss_pred             hhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHH
Q 036661          470 CTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGE  548 (615)
Q Consensus       470 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~  548 (615)
                      +.+-++...-++..+...+.++..|  ..+.+|+..|.+.+.+.+|.+.|+... ..|+...+..+..++.+.|+.+.|.
T Consensus       304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE  381 (400)
T ss_pred             hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence            4556666666666666665444333  456666666666666666666666554 5666666666666666666666666


Q ss_pred             HHHHHHh
Q 036661          549 YVAYRLF  555 (615)
Q Consensus       549 ~~~~~~~  555 (615)
                      +..++++
T Consensus       382 ~~r~e~L  388 (400)
T COG3071         382 QVRREAL  388 (400)
T ss_pred             HHHHHHH
Confidence            6666655

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.3e-09  Score=98.58  Aligned_cols=309  Identities=11%  Similarity=-0.002  Sum_probs=223.0

Q ss_pred             CCCCHHhHHHHHHhcc--CchhhhhhhHHHHHHHH-hcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcc---cH
Q 036661          254 FRPDVTTVVSLLSSCV--CPEALVQGRLVHSHGIH-YGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRV---SW  327 (615)
Q Consensus       254 ~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~  327 (615)
                      +.|...+....+.+++  ..++-..+.+.+-.+.. .-++.+......+...+...|+.++|+..|++..--|+.   ..
T Consensus       190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M  269 (564)
T KOG1174|consen  190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM  269 (564)
T ss_pred             cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence            3444445444444433  23333334333333333 346778889999999999999999999999987443333   23


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 036661          328 TAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC  407 (615)
Q Consensus       328 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  407 (615)
                      ......+.+.|+.+....+...+.... .-....|-.-.......++++.|..+-+..++.+ +.+...+-.-..++...
T Consensus       270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~  347 (564)
T KOG1174|consen  270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL  347 (564)
T ss_pred             HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence            333445567888888888887776542 1222222223333456678899999888888765 44555565556778889


Q ss_pred             CChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHhhc-cCchHHHHHH
Q 036661          408 GSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVL-QACTH-AGFLEKGWGY  482 (615)
Q Consensus       408 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~~~~~~a~~~  482 (615)
                      ++++.|.-.|+....   -+...|..|+.+|...|.+.+|...-+..... ++.+..+...+. ..|.. ..--++|.++
T Consensus       348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf  426 (564)
T KOG1174|consen  348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF  426 (564)
T ss_pred             cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence            999999999987554   36789999999999999999999988887775 455666666553 34433 3345788888


Q ss_pred             HHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          483 FNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       483 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      +++..   .+.|+ ......++..+...|+.++++.++++.. ..||....+.|+..+...+.+.+|...|..+++++|+
T Consensus       427 ~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~  503 (564)
T KOG1174|consen  427 AEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK  503 (564)
T ss_pred             HHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence            88876   45666 3566778899999999999999999987 8899999999999999999999999999999999999


Q ss_pred             CCCChHhH
Q 036661          561 SAAPYVEM  568 (615)
Q Consensus       561 ~~~~~~~l  568 (615)
                      +..+...+
T Consensus       504 ~~~sl~Gl  511 (564)
T KOG1174|consen  504 SKRTLRGL  511 (564)
T ss_pred             chHHHHHH
Confidence            76655554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.47  E-value=2.7e-10  Score=111.18  Aligned_cols=411  Identities=12%  Similarity=0.036  Sum_probs=269.2

Q ss_pred             HHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC-CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHh
Q 036661          182 IHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG-LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTT  260 (615)
Q Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  260 (615)
                      ....+..|..+|..+.-+....|+++.+-+.|++.... ......|+.+...+...|.-..|+.+++.-......|+..+
T Consensus       315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s  394 (799)
T KOG4162|consen  315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS  394 (799)
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence            33445667888999999999999999999999987643 44567899999999999999999999988766543354443


Q ss_pred             -HHHHHHhcc-CchhhhhhhHHHHHHHHh--cC--CCChhHHHHHHHHHHhcC-----------CHHHHHHHHhcc---C
Q 036661          261 -VVSLLSSCV-CPEALVQGRLVHSHGIHY--GF--DLDVSVINTLISMYSKCG-----------DIDSARFLFDGM---C  320 (615)
Q Consensus       261 -~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~---~  320 (615)
                       +...-+.|. +.+..+++..+-..+.+.  +.  ...+..+..+.-+|...-           ...++...+++.   .
T Consensus       395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d  474 (799)
T KOG4162|consen  395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD  474 (799)
T ss_pred             HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence             333334444 467777777776666652  11  223344444444444321           123445555555   2


Q ss_pred             CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHh-cCCCCchHHHHH
Q 036661          321 DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACS-GGLKDNVMVCNA  399 (615)
Q Consensus       321 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~  399 (615)
                      ..|+...-.+.--|+-.++.+.|+...++..+.+-.-+...+..+.-.+...+++..|+.+.+.... .|.  +-.....
T Consensus       475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~  552 (799)
T KOG4162|consen  475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDG  552 (799)
T ss_pred             CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchh
Confidence            2344444445556777889999999999998886677888888888888889999999998887665 221  1110111


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCC--------------------------------CChHHHHHHHHHHHhc---CChHHH
Q 036661          400 LIDMYSKCGSIGDARELFYALPE--------------------------------KTVVSWTTMIAGCALN---GEFVEA  444 (615)
Q Consensus       400 l~~~~~~~g~~~~A~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~---~~~~~a  444 (615)
                      -+..-..-++.+++......+..                                ..+.++..+..-....   -..+..
T Consensus       553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~  632 (799)
T KOG4162|consen  553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK  632 (799)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence            11111122333333322221110                                0111222221111100   001111


Q ss_pred             HHHHHHHHHcCCCC--C------HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036661          445 LDLFHQMMELDLRP--N------RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL  516 (615)
Q Consensus       445 ~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  516 (615)
                            +...-+.|  +      ...|......+.+.+..++|.-.+.++.+  ..+-....|...+..+...|+.++|.
T Consensus       633 ------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~  704 (799)
T KOG4162|consen  633 ------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAK  704 (799)
T ss_pred             ------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHH
Confidence                  11111122  2      12344556677888899999988888874  33445567888889999999999999


Q ss_pred             HHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHH--HHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          517 DFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEY--VAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       517 ~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      +.|.... ..|+ ..+...++..+.+.|+..-|..  ++..+++++|.++.+|..+|.++...|+.++|.+.|+-..+-.
T Consensus       705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            9999887 5564 5688889999999998888888  9999999999999999999999999999999999999887754


Q ss_pred             cccCCceeEEE
Q 036661          593 VKKFPGQSLVH  603 (615)
Q Consensus       593 ~~~~~~~~~~~  603 (615)
                      . ..|-.+|.-
T Consensus       785 ~-S~PV~pFs~  794 (799)
T KOG4162|consen  785 E-SNPVLPFSN  794 (799)
T ss_pred             c-CCCcccccc
Confidence            3 445555543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=8.6e-11  Score=102.67  Aligned_cols=189  Identities=13%  Similarity=0.128  Sum_probs=89.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCCC-Ccc------cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhc
Q 036661          298 TLISMYSKCGDIDSARFLFDGMCDR-TRV------SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCG  370 (615)
Q Consensus       298 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  370 (615)
                      +|.+.|.+.|..|.|+++-+.+.+. |..      ....|..-|...|-++.|+.+|..+.+.| .--......|+..|-
T Consensus        74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ  152 (389)
T COG2956          74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQ  152 (389)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHH
Confidence            3444444455555555554444222 211      12234444555555566666665555433 122233444555555


Q ss_pred             ccchhhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHhcCChHHHHHHHhcCCCCC---hHHHHHHHHHHHhcCChHH
Q 036661          371 QSGALELGKWFDNYACSGGLKDN----VMVCNALIDMYSKCGSIGDARELFYALPEKT---VVSWTTMIAGCALNGEFVE  443 (615)
Q Consensus       371 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~  443 (615)
                      ...++++|.++-+.+.+.+-.+.    ...|.-|...+....+++.|..++.+..+.|   +..--.+.+.+...|+++.
T Consensus       153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~  232 (389)
T COG2956         153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK  232 (389)
T ss_pred             HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence            55555555555555444332221    1223334444444455555555555444422   2223334445555555555


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661          444 ALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMT  487 (615)
Q Consensus       444 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  487 (615)
                      |++.|+...+.+..--+.+...|..+|...|+.++....+.++.
T Consensus       233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~  276 (389)
T COG2956         233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM  276 (389)
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            55555555555322223345555555555555555555555555

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=6.8e-11  Score=103.29  Aligned_cols=290  Identities=13%  Similarity=0.105  Sum_probs=220.5

Q ss_pred             cCCHHHHHHHHhccCCCCccc---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHhhcccchhhHHH
Q 036661          306 CGDIDSARFLFDGMCDRTRVS---WTAMISGYAQKGDLDEALRLFFAMEAAGEVPDL---VTVLSMISGCGQSGALELGK  379 (615)
Q Consensus       306 ~~~~~~a~~~~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~  379 (615)
                      .++.++|.+.|-+|.+.|..+   .-+|...|.+.|..+.|+++-+.+.++.--+..   .....|..-|...|-+|.|+
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            468899999999986665554   457888999999999999999998875322222   23344556688899999999


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCCh--------HHHHHHHHHHHhcCChHHHHHHHHHH
Q 036661          380 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTV--------VSWTTMIAGCALNGEFVEALDLFHQM  451 (615)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~  451 (615)
                      .+|..+.+.+ ..-......|+..|-...+|++|+++-+++..-+.        ..|.-|...+....+.+.|...+++.
T Consensus       128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            9999998855 44556678899999999999999998876655222        24555666677788999999999999


Q ss_pred             HHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh
Q 036661          452 MELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG  529 (615)
Q Consensus       452 ~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~  529 (615)
                      .+.  .|+. ..-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++. ..+...
T Consensus       207 lqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         207 LQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             Hhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence            986  4554 34455677889999999999999999864 322235678889999999999999999998876 555555


Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH-c--cCChHHHHHHHHHHHhcCcccCCcee
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA-L--GGRWDGVANLRTMMKRNQVKKFPGQS  600 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~--~g~~~~A~~~~~~~~~~~~~~~~~~~  600 (615)
                      ....+...-....-.+.|...+.+-+...|.- .....+.+... .  -|.+.+-+-+++.|..+.++..|.+.
T Consensus       284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YR  356 (389)
T COG2956         284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYR  356 (389)
T ss_pred             HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCce
Confidence            55556665556667788888888888889984 44444444433 3  35588889999999999888877543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.45  E-value=2.8e-10  Score=102.71  Aligned_cols=285  Identities=13%  Similarity=0.021  Sum_probs=158.8

Q ss_pred             cCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHH
Q 036661          133 MGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELV  212 (615)
Q Consensus       133 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  212 (615)
                      .|+|.+|.+++.+-.+.+-.| ...|..-.++.-+.|+.+.+-.++.+..+..-.++..+..+..+.....|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            577777777777755544222 3334555556667777777777777777654455556666777777777887777777


Q ss_pred             HHhcccC-CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCC
Q 036661          213 FRGIEEG-LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDL  291 (615)
Q Consensus       213 ~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  291 (615)
                      ..++.+. +...........+|.+.|++.....++..|.+.|+-.+...-                            ..
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l  227 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL  227 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence            7766655 445666777778888888888888888888777754433210                            00


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 036661          292 DVSVINTLISMYSKCGDIDSARFLFDGMC---DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISG  368 (615)
Q Consensus       292 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  368 (615)
                      ...++..+++-....+..+.-...++..+   +.++..-..++.-+.+.|+.++|.++..+..+.+..|+..+    .-.
T Consensus       228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~  303 (400)
T COG3071         228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP  303 (400)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence            11234445554444455555455555552   22455556666667777777777777777776665555222    122


Q ss_pred             hcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHH
Q 036661          369 CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALD  446 (615)
Q Consensus       369 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~  446 (615)
                      +.+.++.+.-.+..+...+.. +.++..+.+|...|.+.+.+.+|...|+...+  ++..+|+.+..++.+.|++.+|.+
T Consensus       304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~  382 (400)
T COG3071         304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ  382 (400)
T ss_pred             hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence            334444444444433333321 22224444444444444444444444443322  344444444444444444444444


Q ss_pred             HHHHH
Q 036661          447 LFHQM  451 (615)
Q Consensus       447 ~~~~~  451 (615)
                      ..++.
T Consensus       383 ~r~e~  387 (400)
T COG3071         383 VRREA  387 (400)
T ss_pred             HHHHH
Confidence            44433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.44  E-value=2.1e-08  Score=96.13  Aligned_cols=493  Identities=12%  Similarity=0.077  Sum_probs=278.2

Q ss_pred             hHHHHHHHHHhhcCCChhHHHHhhccCCC-----CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHH
Q 036661           89 IFVQTTMVDMYAKCDRLDCAYKLFDKMPD-----RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQ  163 (615)
Q Consensus        89 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  163 (615)
                      +..|-..+.....+|++......|+....     .....|...+....+.|-++-++.+++...+.  .|  ..-.--+.
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie  177 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIE  177 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHH
Confidence            34555556666666666666666655432     13345666666666666666666666666542  22  22444455


Q ss_pred             HHHhcCChhHHHHHHHHHHHh------cCCCccchHHHHHHHHHccCCH---HHHHHHHHhcccCCCC--cchHHHHHHH
Q 036661          164 AAIHAKHLSLLKSVHSFGIHI------GVDADVSVCNTWISAYAKCNDL---KMAELVFRGIEEGLRT--VVSWNSIIGG  232 (615)
Q Consensus       164 ~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~--~~~~~~li~~  232 (615)
                      .++..+++++|.+.+...+..      ..+.+...|..+.+..++.-+.   -....+++......+|  ...|..|...
T Consensus       178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY  257 (835)
T KOG2047|consen  178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY  257 (835)
T ss_pred             HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence            555666666666665555422      1123344555555444443221   1233444444433333  2345666666


Q ss_pred             HhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCch----------------------hhhhhhHHHHHHHHhcC-
Q 036661          233 CTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPE----------------------ALVQGRLVHSHGIHYGF-  289 (615)
Q Consensus       233 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~~~-  289 (615)
                      |.+.|.+++|.++|++....-  ....-|+.+..+|+.-.                      +++.....++.+...+. 
T Consensus       258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~  335 (835)
T KOG2047|consen  258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL  335 (835)
T ss_pred             HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence            666666666666666555432  22222333333322111                      11222223333322210 


Q ss_pred             ----------CCChhHHHHHHHHHHhcCCHHHHHHHHhccC---CC------CcccHHHHHHHHHhcCChhHHHHHHHHH
Q 036661          290 ----------DLDVSVINTLISMYSKCGDIDSARFLFDGMC---DR------TRVSWTAMISGYAQKGDLDEALRLFFAM  350 (615)
Q Consensus       290 ----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~  350 (615)
                                +.+...+..-+  -+..|+..+-...+.+..   .|      -...|..+.+.|-..|+.+.|..+|++.
T Consensus       336 ~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka  413 (835)
T KOG2047|consen  336 LLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA  413 (835)
T ss_pred             HHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence                      11112222111  122345555555555541   11      1236888889999999999999999988


Q ss_pred             HHCCCCCC---HHHHHHHHHhhcccchhhHHHHHHHHHHhcC-----------CCC------chHHHHHHHHHHHhcCCh
Q 036661          351 EAAGEVPD---LVTVLSMISGCGQSGALELGKWFDNYACSGG-----------LKD------NVMVCNALIDMYSKCGSI  410 (615)
Q Consensus       351 ~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~~g~~  410 (615)
                      ..-..+.-   ..+|..-...=.+..+++.|.++.+......           .++      +..+|..+++.--..|-+
T Consensus       414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf  493 (835)
T KOG2047|consen  414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF  493 (835)
T ss_pred             hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence            76543221   1233333344445567788888777765321           111      234455566666677888


Q ss_pred             HHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhc---cCchHHHHHHH
Q 036661          411 GDARELFYALPEK---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTH---AGFLEKGWGYF  483 (615)
Q Consensus       411 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~~~~~~a~~~~  483 (615)
                      +....+++.+.+-   ++...-.....+-.+.-++++.+++++-+..--.|+. ..|+..+.-+.+   ...++.|..+|
T Consensus       494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF  573 (835)
T KOG2047|consen  494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF  573 (835)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            8888888887762   3332222233334556688899999887776445666 477776665543   33689999999


Q ss_pred             HHHHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC--hhhHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661          484 NLMTKVYQVNPEL--NHYSCMADLLGRKGKLKEALDFVQSMP--IKSD--AGIWGTLLCACKIHRNIEIGEYVAYRLFEL  557 (615)
Q Consensus       484 ~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  557 (615)
                      ++..+  +.+|..  ..|...+..=.+.|-...|+.+++++.  .++.  ...|+.++.-....=-+..-..+|+++++.
T Consensus       574 EqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~  651 (835)
T KOG2047|consen  574 EQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES  651 (835)
T ss_pred             HHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence            99996  666653  234444444456788999999999986  3332  234555554333333455667899999999


Q ss_pred             CCCCC--CChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          558 EPHSA--APYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       558 ~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      -|++.  ......++.-.+.|..+.|+.+|..-.+-
T Consensus       652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~  687 (835)
T KOG2047|consen  652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI  687 (835)
T ss_pred             CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence            88753  33445688888999999999999766553

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=2.9e-09  Score=100.90  Aligned_cols=436  Identities=13%  Similarity=0.065  Sum_probs=237.9

Q ss_pred             HHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHH
Q 036661          130 FAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMA  209 (615)
Q Consensus       130 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  209 (615)
                      +...|++++|.+....+...+ +-|...+..=+-++.+.+.++.|..+.+.-..  ...+...+..-.-+..+.+..++|
T Consensus        22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dea   98 (652)
T KOG2376|consen   22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEA   98 (652)
T ss_pred             hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHHHH
Confidence            334455555555555555432 22233344444444555555555433221110  011111111222334457777777


Q ss_pred             HHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHH-hHHHHHHhccCchhhhhhhHHHHHHHHhc
Q 036661          210 ELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVT-TVVSLLSSCVCPEALVQGRLVHSHGIHYG  288 (615)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  288 (615)
                      ...++.+.  ..+..+...-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-..       ... ..+....
T Consensus        99 lk~~~~~~--~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~q~v~  168 (652)
T KOG2376|consen   99 LKTLKGLD--RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLLQSVP  168 (652)
T ss_pred             HHHHhccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHHHhcc
Confidence            77777444  3333344555566777888888888888887665422111 11111111000       000 0111111


Q ss_pred             CCCChhHHH---HHHHHHHhcCCHHHHHHHHhcc--------CCCCcc----------cHHHHHHHHHhcCChhHHHHHH
Q 036661          289 FDLDVSVIN---TLISMYSKCGDIDSARFLFDGM--------CDRTRV----------SWTAMISGYAQKGDLDEALRLF  347 (615)
Q Consensus       289 ~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~--------~~~~~~----------~~~~ll~~~~~~~~~~~a~~~~  347 (615)
                      ..| ..+|.   .....+...|++.+|+++++..        ...|..          .-..+...+...|+..+|.+++
T Consensus       169 ~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy  247 (652)
T KOG2376|consen  169 EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY  247 (652)
T ss_pred             CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            122 22232   2344556778888888888766        221111          2234555677899999999999


Q ss_pred             HHHHHCCCCCCHHH----HHHHHHhhcccchhh-HHHHHHHHHH-----------hcCCCCchHHHHHHHHHHHhcCChH
Q 036661          348 FAMEAAGEVPDLVT----VLSMISGCGQSGALE-LGKWFDNYAC-----------SGGLKDNVMVCNALIDMYSKCGSIG  411 (615)
Q Consensus       348 ~~~~~~~~~~~~~~----~~~ll~~~~~~~~~~-~a~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~  411 (615)
                      ...+... ++|...    .+.++..-....-.+ .....++...           ...-.-....-+.++..|  .+..+
T Consensus       248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~  324 (652)
T KOG2376|consen  248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMD  324 (652)
T ss_pred             HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHH
Confidence            9998875 444432    223332211111111 0111111110           000011111122333333  35566


Q ss_pred             HHHHHHhcCCCCC-hHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCchHHHHHHHH--
Q 036661          412 DARELFYALPEKT-VVSWTTMIAGC--ALNGEFVEALDLFHQMMELDLRPNR--VTFLAVLQACTHAGFLEKGWGYFN--  484 (615)
Q Consensus       412 ~A~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~--  484 (615)
                      .+.++...++... ...+..++..+  ++...+..+.+++...-+.  .|..  ......+.....+|+++.|.+++.  
T Consensus       325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~  402 (652)
T KOG2376|consen  325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLF  402 (652)
T ss_pred             HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            7777777776643 23444444433  2333578888888888775  4443  455566777889999999999998  


Q ss_pred             ------HHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCChh----hHHHHHHHHHHhCChhHHHH
Q 036661          485 ------LMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-----IKSDAG----IWGTLLCACKIHRNIEIGEY  549 (615)
Q Consensus       485 ------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~----~~~~l~~~~~~~~~~~~A~~  549 (615)
                            .+.   .+.-.+.+...+...+.+.++.+.|..++.+..     ..+...    .+..++..-.++|+.++|..
T Consensus       403 ~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s  479 (652)
T KOG2376|consen  403 LESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS  479 (652)
T ss_pred             hhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence                  333   223334456668888999998888888777664     222222    33444455567899999999


Q ss_pred             HHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661          550 VAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       550 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                      +++++++.+|++......++.+|.+. +.+.|..+-+++
T Consensus       480 ~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  480 LLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            99999999999999999999999765 566666665444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.39  E-value=9.7e-08  Score=91.88  Aligned_cols=553  Identities=11%  Similarity=0.055  Sum_probs=305.4

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhH
Q 036661           28 EAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDC  107 (615)
Q Consensus        28 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  107 (615)
                      .+...|+.++|.+....-.+.++. +...|+.+.-.+....++.+|...|..+.+.+ +.|...+.-+.-.-++.|+++.
T Consensus        50 ~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   50 TLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             hhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhh
Confidence            455566677777776666665443 55666666666666677777777777777665 4455555544444455555555


Q ss_pred             HHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcC-CcCChhHHHHHHHH------HHhcCChhHHHHH
Q 036661          108 AYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVG-IQADFVTVMGLTQA------AIHAKHLSLLKSV  177 (615)
Q Consensus       108 a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~------~~~~~~~~~a~~~  177 (615)
                      ....-....+   .....|..+..+..-.|+...|..++++..+.. -.|+...|......      ....|..+.|.+.
T Consensus       128 ~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~  207 (700)
T KOG1156|consen  128 YLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH  207 (700)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            4443333332   245567777777777888888888888877654 24565555433332      2344555666555


Q ss_pred             HHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHh-cCCChhhHH-HHHHHHHHCCCC
Q 036661          178 HSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCT-YGDKFDDSL-NFYRHMIYDGFR  255 (615)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~-~~~~~m~~~~~~  255 (615)
                      +..-... +......-.+-...+.+.+++++|..++..+....||...|+..+..+. +-.+.-+++ .+|....+. . 
T Consensus       208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y-  284 (700)
T KOG1156|consen  208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-Y-  284 (700)
T ss_pred             HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-C-
Confidence            4443321 1111222334456677788888888888888777776666665554333 222222333 444444332 1 


Q ss_pred             CCHHhHHH-HHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHH----HHHHHhcc-----------
Q 036661          256 PDVTTVVS-LLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDS----ARFLFDGM-----------  319 (615)
Q Consensus       256 p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~-----------  319 (615)
                      |....... -+.......-.+....++....+.|+++-   +..+...|-.....+-    +..+...+           
T Consensus       285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~  361 (700)
T KOG1156|consen  285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDD  361 (700)
T ss_pred             cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence            11110000 01111112223334555666666665542   3333333322111111    11111111           


Q ss_pred             ---CCCCcc--cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHhhcccchhhHHHHHHHHHHhcCCCCc
Q 036661          320 ---CDRTRV--SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV-TVLSMISGCGQSGALELGKWFDNYACSGGLKDN  393 (615)
Q Consensus       320 ---~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  393 (615)
                         .+|...  ++..++..+-+.|+++.|...++.....  .|+.. -|..-.+.+...|+++.|..++++..+.+ .+|
T Consensus       362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aD  438 (700)
T KOG1156|consen  362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TAD  438 (700)
T ss_pred             cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chh
Confidence               122333  3445677888899999999999988765  56554 45555677888999999999999988876 566


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHhcCCCCCh----------HHHHHH--HHHHHhcCChHHHHHHHHHHHHc--CC---
Q 036661          394 VMVCNALIDMYSKCGSIGDARELFYALPEKTV----------VSWTTM--IAGCALNGEFVEALDLFHQMMEL--DL---  456 (615)
Q Consensus       394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~--~~---  456 (615)
                      ..+-.--+.-..+.++.++|.++.......+.          -.|-.+  ..+|.+.|++..|++-|..+...  .+   
T Consensus       439 R~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~d  518 (700)
T KOG1156|consen  439 RAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSED  518 (700)
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhh
Confidence            66655667777888999999998887776321          134333  35677788887777666555431  01   


Q ss_pred             CCCHHHH----------HHHHHHhhccC---c----hHHHHHHHHHHHHhhCC-CCChhHHHHHH----HHHHhcC-ChH
Q 036661          457 RPNRVTF----------LAVLQACTHAG---F----LEKGWGYFNLMTKVYQV-NPELNHYSCMA----DLLGRKG-KLK  513 (615)
Q Consensus       457 ~p~~~~~----------~~l~~~~~~~~---~----~~~a~~~~~~~~~~~~~-~~~~~~~~~l~----~~~~~~g-~~~  513 (615)
                      +-|-.||          .-|+.-.-...   .    ...|++++=+|...... .+.......+.    ....++. +-.
T Consensus       519 qfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~k  598 (700)
T KOG1156|consen  519 QFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKK  598 (700)
T ss_pred             hhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHH
Confidence            2233333          22222111111   1    22445555555532100 01111111111    1111111 111


Q ss_pred             HHHHHHHhC--------C------CCCChhhHHHHHHHHHHhC-ChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCCh
Q 036661          514 EALDFVQSM--------P------IKSDAGIWGTLLCACKIHR-NIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRW  578 (615)
Q Consensus       514 ~A~~~~~~~--------~------~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  578 (615)
                      +|.+.-+.+        .      ..||..   .++..+.+.. =.++|...+.......+++...|..-..+|.+.|++
T Consensus       599 k~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~  675 (700)
T KOG1156|consen  599 KAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKF  675 (700)
T ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHH
Confidence            121111111        1      223333   3333444433 347799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCcc
Q 036661          579 DGVANLRTMMKRNQVK  594 (615)
Q Consensus       579 ~~A~~~~~~~~~~~~~  594 (615)
                      .-|.+.++++......
T Consensus       676 ~l~~~~~~~~~~~~~~  691 (700)
T KOG1156|consen  676 LLALACLNNAEGIHGT  691 (700)
T ss_pred             HHHHHHHHhhhhhcCC
Confidence            9999999888765543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.38  E-value=1.4e-10  Score=112.60  Aligned_cols=232  Identities=18%  Similarity=0.207  Sum_probs=172.9

Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHHHhc-----C-CCCch-HHHHHHHHHHHhcCChHHHHHHHhcCCC-------C-
Q 036661          359 LVTVLSMISGCGQSGALELGKWFDNYACSG-----G-LKDNV-MVCNALIDMYSKCGSIGDARELFYALPE-------K-  423 (615)
Q Consensus       359 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-  423 (615)
                      ..+...+...|...|+++.|..+++...+.     | ..|.. ...+.+...|...+++.+|..+|+++..       + 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            346666777888888888888888776653     2 12222 2334577788889999988888887654       1 


Q ss_pred             C---hHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhC--
Q 036661          424 T---VVSWTTMIAGCALNGEFVEALDLFHQMME-----LDL-RPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ--  491 (615)
Q Consensus       424 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--  491 (615)
                      +   ..+++.|...|...|++++|...+++..+     .|. .|.. ..++.+...|...+++++|..+++...+.+.  
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            2   24778888899999999998888877654     122 2222 2466677788999999999999998775433  


Q ss_pred             CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661          492 VNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP---------IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFEL  557 (615)
Q Consensus       492 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  557 (615)
                      +.++    ..++..|+..|...|++++|.++++++.         ..+. ...++.+...|.+.+++.+|.++|.+...+
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            2222    3578899999999999999999999875         1222 346778889998999999999999888653


Q ss_pred             ----CCCC---CCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          558 ----EPHS---AAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       558 ----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                          .|++   ..+|.+|+.+|.++|++++|.++.+++..
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence                3444   45788999999999999999999988863

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.38  E-value=7.1e-09  Score=102.21  Aligned_cols=45  Identities=16%  Similarity=0.135  Sum_probs=41.5

Q ss_pred             ChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHH
Q 036661          543 NIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTM  587 (615)
Q Consensus       543 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  587 (615)
                      =.++|.++++-+.+..|++..+|..-..+|.|.|++--|++.+.+
T Consensus       472 PLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k  516 (517)
T PF12569_consen  472 PLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK  516 (517)
T ss_pred             HHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence            458899999999999999999999999999999999999988765

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.36  E-value=8.1e-11  Score=98.09  Aligned_cols=162  Identities=13%  Similarity=0.150  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHH
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMAD  504 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~  504 (615)
                      +...|.-.|.+.|++..|..-+++.++.  .|+. .++..+...|.+.|..+.|.+.|++..+   +.|+ ..+.|..+.
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~  111 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA  111 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence            4566778899999999999999999987  5655 5888888899999999999999999884   3454 578888999


Q ss_pred             HHHhcCChHHHHHHHHhCCCCC----ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHH
Q 036661          505 LLGRKGKLKEALDFVQSMPIKS----DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDG  580 (615)
Q Consensus       505 ~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  580 (615)
                      .+|..|++++|...|++....|    ...+|..++.+..+.|+.+.|...++++++.+|+.+.....++..+...|++-.
T Consensus       112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~  191 (250)
T COG3063         112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP  191 (250)
T ss_pred             HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence            9999999999999999987444    245888888888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCc
Q 036661          581 VANLRTMMKRNQV  593 (615)
Q Consensus       581 A~~~~~~~~~~~~  593 (615)
                      |..++++....+.
T Consensus       192 Ar~~~~~~~~~~~  204 (250)
T COG3063         192 ARLYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHHHhccc
Confidence            9999999887776

>PRK12370 invasion protein regulator; Provisional

Probab=99.36  E-value=2.3e-10  Score=116.94  Aligned_cols=245  Identities=13%  Similarity=0.004  Sum_probs=179.3

Q ss_pred             ChhHHHHHHHHHHHCCCCCC-HHHHHHHHHhhc---------ccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC
Q 036661          339 DLDEALRLFFAMEAAGEVPD-LVTVLSMISGCG---------QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG  408 (615)
Q Consensus       339 ~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  408 (615)
                      +.++|...|++..+.  .|+ ...+..+..++.         ..++.+.|...++...+.+ +.+...+..+..++...|
T Consensus       276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            356888888888765  343 334444333322         3456789999999888876 567778888888899999


Q ss_pred             ChHHHHHHHhcCCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHH
Q 036661          409 SIGDARELFYALPE--K-TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFN  484 (615)
Q Consensus       409 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~  484 (615)
                      ++++|...+++..+  | +...+..+..++...|++++|+..+++..+.  .|+. ..+..++..+...|++++|...++
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            99999999998765  3 4568888999999999999999999999987  4543 233444555667899999999999


Q ss_pred             HHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh-hHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          485 LMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       485 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                      ++...  .+|+ ...+..++.++...|++++|...++++. ..|+.. .+..+...+...|  +.|...++++++..-..
T Consensus       431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~  506 (553)
T PRK12370        431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI  506 (553)
T ss_pred             HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence            98753  2343 4456778899999999999999999876 445443 4445555666666  58888888877654333


Q ss_pred             CCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          562 AAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       562 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +........+|.-.|+.+.+... +++.+.+.
T Consensus       507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~  537 (553)
T PRK12370        507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN  537 (553)
T ss_pred             hcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence            33344477888889998888777 88877654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.34  E-value=2.9e-11  Score=105.56  Aligned_cols=231  Identities=13%  Similarity=0.076  Sum_probs=124.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 036661          328 TAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC  407 (615)
Q Consensus       328 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  407 (615)
                      +.+.++|.+.|-+.+|.+.++.-...  .|-+.||..|-+.|.+..++..|..++.+-.+.- +.++.......+.+...
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence            45566666666666666666665554  3444455555555555555555555544443321 22333333334444444


Q ss_pred             CChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHH
Q 036661          408 GSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFN  484 (615)
Q Consensus       408 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  484 (615)
                      ++.++|.++++...+   .++.....+...|.-.++++-|+.+++++.+.|+ -++..|+.+.-+|...+++|-++.-|+
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            444444444444333   2233333334444444555555555555555542 334444444444444455555544444


Q ss_pred             HHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661          485 LMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP  564 (615)
Q Consensus       485 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  564 (615)
                      +.... .-.|+                              ....+|..+.......||+..|.+.|+-++.-+|++.+.
T Consensus       383 RAlst-at~~~------------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea  431 (478)
T KOG1129|consen  383 RALST-ATQPG------------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA  431 (478)
T ss_pred             HHHhh-ccCcc------------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence            44421 11111                              113456666666666777777777777777777777777


Q ss_pred             hHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          565 YVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +++|+-+-.+.|+.++|..+++...+..+
T Consensus       432 lnNLavL~~r~G~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  432 LNNLAVLAARSGDILGARSLLNAAKSVMP  460 (478)
T ss_pred             HHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence            88887777788888888877777766443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.33  E-value=1.4e-10  Score=108.25  Aligned_cols=189  Identities=20%  Similarity=0.147  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhh
Q 036661          396 VCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN-RVTFLAVLQACT  471 (615)
Q Consensus       396 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~  471 (615)
                      .+..+...|...|+.+.|...|++..+   .++..|+.+...+...|++++|...|++..+.  .|+ ...+..+..++.
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~  143 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            344455555556666666655555443   23455666666666666666666666666654  333 345555555555


Q ss_pred             ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHH
Q 036661          472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEY  549 (615)
Q Consensus       472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~  549 (615)
                      ..|++++|.+.+++..+.   .|+..........+...++.++|.+.+++..  ..|+.  |. ........|+...+ +
T Consensus       144 ~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~-~  216 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEE-T  216 (296)
T ss_pred             HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cH-HHHHHHHccCCCHH-H
Confidence            666666666666665532   3332211111122334455666666664432  12221  11 11112223333222 1


Q ss_pred             HHHHHh-------ccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          550 VAYRLF-------ELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       550 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      .++.+.       ++.|+.+.+|..+|.+|...|++++|+..|++..+.++
T Consensus       217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            222222       33344455666666666666666666666666655544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.33  E-value=6.4e-08  Score=95.03  Aligned_cols=134  Identities=16%  Similarity=0.114  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHH
Q 036661          426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMAD  504 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~  504 (615)
                      ..|......+.+.++.++|...+.+..... +-....|......+...|...+|.+.|....   .+.|+ +....+++.
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~  726 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE  726 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence            357777788889999999998888888752 3344677777788888999999999998887   55666 567888999


Q ss_pred             HHHhcCChHHHHH--HHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661          505 LLGRKGKLKEALD--FVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA  563 (615)
Q Consensus       505 ~~~~~g~~~~A~~--~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  563 (615)
                      ++.+.|+..-|..  ++..+.  .+.+...|..++..+.+.|+.++|...|+.++++++.+|.
T Consensus       727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            9999998888877  888887  4446789999999999999999999999999999988764

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.33  E-value=4.8e-11  Score=104.21  Aligned_cols=192  Identities=11%  Similarity=0.083  Sum_probs=160.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhccC
Q 036661          398 NALIDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVT-FLAVLQACTHAG  474 (615)
Q Consensus       398 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~  474 (615)
                      +.+..+|.+.|.+.+|.+.++.-.+  +-+.||..|-++|.+..+++.|+.++.+..+.  .|-.+| .....+.+...+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence            5678889999999999999987655  77889999999999999999999999999886  555554 455677888999


Q ss_pred             chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHH
Q 036661          475 FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAY  552 (615)
Q Consensus       475 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~  552 (615)
                      +.++|.++++...+.  .+.+++...+++..|.-.++++-|+.+++++.  .--++..+..+.-+|.-.++++-++..++
T Consensus       305 ~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             hHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            999999999999863  34456667778888888999999999999986  33456688889999999999999999999


Q ss_pred             HHhccC--CC-CCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          553 RLFELE--PH-SAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       553 ~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +++..-  |+ -+.+|++++.+....|+..-|.+.|+..+..+.
T Consensus       383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~  426 (478)
T KOG1129|consen  383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA  426 (478)
T ss_pred             HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence            998743  33 467999999999999999999999988776543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=5e-08  Score=86.70  Aligned_cols=216  Identities=12%  Similarity=-0.022  Sum_probs=137.2

Q ss_pred             hhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCC-------hHHHHH
Q 036661          374 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGE-------FVEALD  446 (615)
Q Consensus       374 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~  446 (615)
                      +-+.|.+++-.+.+.  -|..  -..|+-.|.+.+++.+|..+.+++...++.-|-.-...++..|+       ..-|.+
T Consensus       269 ngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq  344 (557)
T KOG3785|consen  269 NGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ  344 (557)
T ss_pred             CCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence            345555555544432  2222  23455568899999999999999877666544433333343333       344555


Q ss_pred             HHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 036661          447 LFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--  523 (615)
Q Consensus       447 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--  523 (615)
                      .|+-.-+.+..-|. .--.++..++.-..++++.+-++..+..- -...|...+ .++.+++..|++.+|.++|-.+.  
T Consensus       345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~  422 (557)
T KOG3785|consen  345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP  422 (557)
T ss_pred             HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence            55554444433332 22344455555566789999999888742 333343333 48899999999999999998886  


Q ss_pred             CCCChhhH-HHHHHHHHHhCChhHHHHHHHHHhccCCCCC-CChHhHHHHHHccCChHHHHHHHHHHHhcCcccCC
Q 036661          524 IKSDAGIW-GTLLCACKIHRNIEIGEYVAYRLFELEPHSA-APYVEMANIYALGGRWDGVANLRTMMKRNQVKKFP  597 (615)
Q Consensus       524 ~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  597 (615)
                      .-.+..+| ..+..+|.+.+..+.|..++-+.-  .|.+. ..+..+++.+.+.+.+==|.+.|+.+....+.++.
T Consensus       423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn  496 (557)
T KOG3785|consen  423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN  496 (557)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence            11233344 556678888999998877764432  23322 23345688899999999999999998877765544

>PRK12370 invasion protein regulator; Provisional

Probab=99.32  E-value=2.2e-10  Score=117.08  Aligned_cols=212  Identities=12%  Similarity=0.021  Sum_probs=167.5

Q ss_pred             chhhHHHHHHHHHHhcCCCCchHHHHHHHHHHH---------hcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCC
Q 036661          373 GALELGKWFDNYACSGGLKDNVMVCNALIDMYS---------KCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGE  440 (615)
Q Consensus       373 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~  440 (615)
                      ++.+.|...+++..+.. +.+...+..+..++.         ..+++++|...+++..+   .+...+..+...+...|+
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence            46688999999988765 444556666655544         23457899999988776   366788888899999999


Q ss_pred             hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHH
Q 036661          441 FVEALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDF  518 (615)
Q Consensus       441 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~  518 (615)
                      +++|...++++.+.  .|+ ...+..+..++...|++++|...++++.+   ..|+. ..+..++..+...|++++|...
T Consensus       354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~  428 (553)
T PRK12370        354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL  428 (553)
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence            99999999999997  454 56788888999999999999999999984   35553 2333445567778999999999


Q ss_pred             HHhCC--CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          519 VQSMP--IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       519 ~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      ++++.  .+|+ ...+..+..++...|+.++|...++++....|++......++..|...|  ++|...++++.+..
T Consensus       429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~  503 (553)
T PRK12370        429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE  503 (553)
T ss_pred             HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence            99875  3454 4456777888889999999999999999999988888889999999888  48888888876643

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.31  E-value=8.8e-09  Score=99.93  Aligned_cols=193  Identities=11%  Similarity=0.126  Sum_probs=103.3

Q ss_pred             HHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHH
Q 036661          366 ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEAL  445 (615)
Q Consensus       366 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  445 (615)
                      +.+.....++.+|..+++.+.....  ...-|..+.+.|...|+++.|.++|.+.-.     ++-.+..|.+.|+++.|.
T Consensus       739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~-----~~dai~my~k~~kw~da~  811 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEADL-----FKDAIDMYGKAGKWEDAF  811 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcch-----hHHHHHHHhccccHHHHH
Confidence            3444455566666666666655432  122344556666666666666666654432     444556666667776666


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 036661          446 DLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIK  525 (615)
Q Consensus       446 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  525 (615)
                      ++-.+..  |.......|..-..-+.+.|++.+|.++|-.+.     .|+.     .+..|-+.|..++.+++..+....
T Consensus       812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d  879 (1636)
T KOG3616|consen  812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD  879 (1636)
T ss_pred             HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence            6554443  112222344444445556666666666554433     2432     345666666666666666655422


Q ss_pred             CChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHH
Q 036661          526 SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLR  585 (615)
Q Consensus       526 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  585 (615)
                      .-..+...+..-+-..|+...|+..|-++        .-|..-.+.|...+.|++|-.+-
T Consensus       880 ~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayria  931 (1636)
T KOG3616|consen  880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIA  931 (1636)
T ss_pred             hhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHH
Confidence            12234445555555666666666655443        22444455566666666555444

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.29  E-value=3.1e-08  Score=95.20  Aligned_cols=115  Identities=10%  Similarity=0.042  Sum_probs=84.2

Q ss_pred             CCChhHHH--HHHHHHHhcCChHHHHHHHHhCC-CCCCh-hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661          493 NPELNHYS--CMADLLGRKGKLKEALDFVQSMP-IKSDA-GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEM  568 (615)
Q Consensus       493 ~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  568 (615)
                      +|+...|.  .++..+-+.|+++.|..+++.+. ..|.. ..+..-.+.+...|+.+.|...++++.+++-.|...-..-
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc  445 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC  445 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence            45544443  46777888999999999998887 55543 2444455777788999999999999999886655555567


Q ss_pred             HHHHHccCChHHHHHHHHHHHhcCcc-----cCCceeEEEecCe
Q 036661          569 ANIYALGGRWDGVANLRTMMKRNQVK-----KFPGQSLVHINGK  607 (615)
Q Consensus       569 ~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~  607 (615)
                      +.-..+.++.++|.++.-+....|..     .+..++|+.++.+
T Consensus       446 AKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g  489 (700)
T KOG1156|consen  446 AKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDG  489 (700)
T ss_pred             HHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhh
Confidence            78888999999999999888877641     2346778777643

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.29  E-value=8.5e-10  Score=100.55  Aligned_cols=163  Identities=16%  Similarity=0.157  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHh
Q 036661          395 MVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP-NRVTFLAVLQAC  470 (615)
Q Consensus       395 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~  470 (615)
                      ..+..+...+...|++++|.+.+++...   .+...+..+...+...|++++|.+.+++..+....| ....+..+..++
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  145 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA  145 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            3444445555555555555555554432   233455556666666677777777777766532222 233455566667


Q ss_pred             hccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHH
Q 036661          471 THAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGE  548 (615)
Q Consensus       471 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~  548 (615)
                      ...|++++|...+++..+.  .+.+...+..++..+...|++++|...+++..  .+.+...+..+...+...|+.++|.
T Consensus       146 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  223 (234)
T TIGR02521       146 LKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ  223 (234)
T ss_pred             HHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence            7777777777777777642  22234556667777777777777777777664  2333445555666666777777777


Q ss_pred             HHHHHHhccCC
Q 036661          549 YVAYRLFELEP  559 (615)
Q Consensus       549 ~~~~~~~~~~p  559 (615)
                      ...+.+.+..|
T Consensus       224 ~~~~~~~~~~~  234 (234)
T TIGR02521       224 RYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHhhCc
Confidence            77776665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=3.1e-06  Score=85.77  Aligned_cols=470  Identities=14%  Similarity=0.125  Sum_probs=268.7

Q ss_pred             HHHHHHHhhcCCChhHHHHhhccCCC--CCchhHHH----HHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHH
Q 036661           92 QTTMVDMYAKCDRLDCAYKLFDKMPD--RDVASWNA----MIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAA  165 (615)
Q Consensus        92 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~----li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  165 (615)
                      +..+.+.|.++|-...|++.+..+..  +..+.-+.    -+..|.-.-.++.++++++.|...+++.+..+...+..-|
T Consensus       609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky  688 (1666)
T KOG0985|consen  609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY  688 (1666)
T ss_pred             HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            34556666777777777777766543  11111000    0223333446777888888888877777776666555555


Q ss_pred             HhcCChhHHHHHHHHHHHh-----------cCCCccchHHHHHHHHHccCCHHHHHHHHHhccc----------------
Q 036661          166 IHAKHLSLLKSVHSFGIHI-----------GVDADVSVCNTWISAYAKCNDLKMAELVFRGIEE----------------  218 (615)
Q Consensus       166 ~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------  218 (615)
                      ...=..+...++|+.....           ++.-|+.+.-..+.+.++.|++.+.+++.++-.-                
T Consensus       689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~  768 (1666)
T KOG0985|consen  689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT  768 (1666)
T ss_pred             HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence            5544445555555554321           3456777777888888888888888777643110                


Q ss_pred             -CCC------------Ccch--H----HHHHHHHhc--------------------------------------------
Q 036661          219 -GLR------------TVVS--W----NSIIGGCTY--------------------------------------------  235 (615)
Q Consensus       219 -~~~------------~~~~--~----~~li~~~~~--------------------------------------------  235 (615)
                       ..|            +...  |    ...|..|.+                                            
T Consensus       769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev  848 (1666)
T KOG0985|consen  769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV  848 (1666)
T ss_pred             ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence             011            0000  0    112222222                                            


Q ss_pred             --CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhh-hh---HHHH------HHHHh-----------c----
Q 036661          236 --GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQ-GR---LVHS------HGIHY-----------G----  288 (615)
Q Consensus       236 --~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~---~~~~------~~~~~-----------~----  288 (615)
                        .++..--+.+++...+.|. .|..|++.+...|...++-.+ -.   ..++      -..++           |    
T Consensus       849 EkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~  927 (1666)
T KOG0985|consen  849 EKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL  927 (1666)
T ss_pred             HhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence              2222333334444455554 566667777666554332111 10   0111      01111           1    


Q ss_pred             ----CCCChhHHHHHHHHHHhcCCHHHHHHHHhcc-----------------CCCCcccHHHHHHHHHhcCChhHHHHHH
Q 036661          289 ----FDLDVSVINTLISMYSKCGDIDSARFLFDGM-----------------CDRTRVSWTAMISGYAQKGDLDEALRLF  347 (615)
Q Consensus       289 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~  347 (615)
                          +-.....|....+.+.++.+.+--.+++.+-                 ...|+...+.-+.++...+-+.+.++++
T Consensus       928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen  928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred             HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence                0111223444455555555555444444221                 1125555666777888888888888888


Q ss_pred             HHHHHCCCC-CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCC-----------------------CCchHHHHHHHHH
Q 036661          348 FAMEAAGEV-PDLVTVLSMISGCGQSGALELGKWFDNYACSGGL-----------------------KDNVMVCNALIDM  403 (615)
Q Consensus       348 ~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~  403 (615)
                      +++.-.+-. ........++-.-+-..+..++.++.+++-..+.                       ..+......|+. 
T Consensus      1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie- 1086 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE- 1086 (1666)
T ss_pred             HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH-
Confidence            887643211 1111122222222222233444444444433221                       111111111111 


Q ss_pred             HHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHH
Q 036661          404 YSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYF  483 (615)
Q Consensus       404 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  483 (615)
                        ..+.+++|.+.-++..  .+..|+.+..+-.+.|...+|++-|-+.      -|+..|.-+++...+.|.|++-.+++
T Consensus      1087 --~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1087 --NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred             --HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence              1233333333333332  3467999999999999999998766442      35567889999999999999999999


Q ss_pred             HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661          484 NLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA  563 (615)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  563 (615)
                      ..++++ .-.|...  +.|+.+|++.++..+-.+++.    .|+.......+.-|...|.++.|.-+|...        .
T Consensus      1157 ~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------S 1221 (1666)
T KOG0985|consen 1157 LMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------S 1221 (1666)
T ss_pred             HHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------h
Confidence            988865 4455544  468999999999887666553    578888888999999999999998887653        4


Q ss_pred             ChHhHHHHHHccCChHHHHHHHHHH
Q 036661          564 PYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       564 ~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                      -|..|+.++...|.|..|...-++.
T Consensus      1222 N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            4788899999999998888766655

>PF13041 PPR_2: PPR repeat family

Probab=99.25  E-value=1.8e-11  Score=79.37  Aligned_cols=50  Identities=32%  Similarity=0.474  Sum_probs=46.0

Q ss_pred             CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHh
Q 036661          118 RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIH  167 (615)
Q Consensus       118 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  167 (615)
                      ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78899999999999999999999999999999999999999999998864

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.21  E-value=4.6e-09  Score=98.15  Aligned_cols=232  Identities=11%  Similarity=-0.045  Sum_probs=157.0

Q ss_pred             CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 036661          338 GDLDEALRLFFAMEAAG-EVPD--LVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAR  414 (615)
Q Consensus       338 ~~~~~a~~~~~~~~~~~-~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  414 (615)
                      +..+.++..+.++.... ..|+  ...|..+...+...|+.+.|...|+...+.. +.+...|+.+...+...|+++.|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            34566666666666432 1222  2345566666777888888888888887765 556788888999999999999999


Q ss_pred             HHHhcCCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhC
Q 036661          415 ELFYALPE--K-TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ  491 (615)
Q Consensus       415 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  491 (615)
                      +.|+...+  | +..+|..+..++...|++++|++.+++..+.  .|+..........+...++.++|...+.+...  .
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~  194 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K  194 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence            99988765  3 4568888888899999999999999999986  55443222222234556789999999977653  2


Q ss_pred             CCCChhHHHHHHHHHHhcCChHH--HHHHHHhCC-CC----C-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCC-CCC
Q 036661          492 VNPELNHYSCMADLLGRKGKLKE--ALDFVQSMP-IK----S-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEP-HSA  562 (615)
Q Consensus       492 ~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~-~~----p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~  562 (615)
                      .+|+...+ .+  .....|+..+  +++.+.+.. ..    | ....|..++..+...|++++|+..|+++++.+| +..
T Consensus       195 ~~~~~~~~-~~--~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~  271 (296)
T PRK11189        195 LDKEQWGW-NI--VEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV  271 (296)
T ss_pred             CCccccHH-HH--HHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence            23332221 23  3333555543  343333322 11    1 235788899999999999999999999999997 555


Q ss_pred             CChHhHHHHHHccCC
Q 036661          563 APYVEMANIYALGGR  577 (615)
Q Consensus       563 ~~~~~l~~~~~~~g~  577 (615)
                      +....+..+....++
T Consensus       272 e~~~~~~e~~~~~~~  286 (296)
T PRK11189        272 EHRYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            555556555544333

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.21  E-value=1.8e-06  Score=85.44  Aligned_cols=226  Identities=10%  Similarity=0.066  Sum_probs=112.3

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHH
Q 036661           21 QWNSQIREAVDKNEAHKALLLFRRMKKN--------DIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQ   92 (615)
Q Consensus        21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   92 (615)
                      .|..|.+.|.+..+.+-|.-.+-.|...        ..+-+..+=..+.......|.+++|+.+|.+-.+.+        
T Consensus       759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------  830 (1416)
T KOG3617|consen  759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD--------  830 (1416)
T ss_pred             HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------
Confidence            5777777777777777666666655431        111111222223333345677777777777665532        


Q ss_pred             HHHHHHhhcCCChhHHHHhhccCCCC-CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCCh
Q 036661           93 TTMVDMYAKCDRLDCAYKLFDKMPDR-DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHL  171 (615)
Q Consensus        93 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  171 (615)
                       .|-..|-..|.|++|.++-+.-.+- =..||.....-+-..++.+.|++.|++..-    |-...+..|.      .++
T Consensus       831 -LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p  899 (1416)
T KOG3617|consen  831 -LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYP  899 (1416)
T ss_pred             -HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hCh
Confidence             3445556667777777766543321 123555556666666777777777765321    1111111110      111


Q ss_pred             hHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHH
Q 036661          172 SLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIY  251 (615)
Q Consensus       172 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  251 (615)
                      ...+++.+.+      .|...|.--...+-..|+.+.|+.+|....       -|-.+++..+-+|+.++|-++-++-  
T Consensus       900 ~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-------D~fs~VrI~C~qGk~~kAa~iA~es--  964 (1416)
T KOG3617|consen  900 KQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAK-------DYFSMVRIKCIQGKTDKAARIAEES--  964 (1416)
T ss_pred             HHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhh-------hhhhheeeEeeccCchHHHHHHHhc--
Confidence            1111111111      122333333333444566666666655444       2444555555556666655555442  


Q ss_pred             CCCCCCHHhHHHHHHhccCchhhhhhhHHHHHH
Q 036661          252 DGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHG  284 (615)
Q Consensus       252 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  284 (615)
                          -|......+.+.|...|++.+|...|...
T Consensus       965 ----gd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  965 ----GDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             ----ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                33444445555555556555555555443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=4.1e-07  Score=82.80  Aligned_cols=179  Identities=7%  Similarity=-0.027  Sum_probs=92.9

Q ss_pred             hcCCHHHHHHHHhccCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHH
Q 036661          305 KCGDIDSARFLFDGMCDR---TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWF  381 (615)
Q Consensus       305 ~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  381 (615)
                      ..++++.|+.+-++.++.   +...+-.-...+...+++++|.-.|+..+... +-+...|..++.+|...|.+.+|...
T Consensus       312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~  390 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANAL  390 (564)
T ss_pred             hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHH
Confidence            344555555555544222   22333333345555566666666666555431 23445666666666666666655554


Q ss_pred             HHHHHhcCCCCchHHHHHHH-HHHH-hcCChHHHHHHHhcCCC--CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 036661          382 DNYACSGGLKDNVMVCNALI-DMYS-KCGSIGDARELFYALPE--KT-VVSWTTMIAGCALNGEFVEALDLFHQMMELDL  456 (615)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  456 (615)
                      -+...+.- +.+..+...+. ..+. ....-++|.++++....  |+ ....+.+...+...|.+++++.++++....  
T Consensus       391 An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--  467 (564)
T KOG1174|consen  391 ANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--  467 (564)
T ss_pred             HHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--
Confidence            44433311 23333333331 1121 12223556666665544  22 234555556666666666666666666553  


Q ss_pred             CCCHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661          457 RPNRVTFLAVLQACTHAGFLEKGWGYFNLMT  487 (615)
Q Consensus       457 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  487 (615)
                      .||....+.|...+...+.+++|.+.|..+.
T Consensus       468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL  498 (564)
T KOG1174|consen  468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL  498 (564)
T ss_pred             ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            5666666666666666666666666666655

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.18  E-value=2.1e-08  Score=97.63  Aligned_cols=235  Identities=14%  Similarity=0.158  Sum_probs=146.7

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhccCCC----------Ccc-cHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-CC
Q 036661          294 SVINTLISMYSKCGDIDSARFLFDGMCDR----------TRV-SWTAMISGYAQKGDLDEALRLFFAMEAA-----G-EV  356 (615)
Q Consensus       294 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~  356 (615)
                      .+...+...|...|+++.|+.+++...+.          .+. ..+.+...|...+++.+|..+|+++...     | ..
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            44555666677777777776666654211          111 2334666778888888888888877542     1 01


Q ss_pred             C-CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CCh-HHHHHH
Q 036661          357 P-DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTV-VSWTTM  431 (615)
Q Consensus       357 ~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~-~~~~~l  431 (615)
                      | -..++..|...|.+.|++++|...++...+                            +++....   +.+ ..++.+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~~  331 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSEL  331 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHHH
Confidence            1 112333444445555555555544443322                            1111111   111 234555


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhh----C-CCCC-hhH
Q 036661          432 IAGCALNGEFVEALDLFHQMMEL---DLRPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVY----Q-VNPE-LNH  498 (615)
Q Consensus       432 ~~~~~~~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~  498 (615)
                      ...+...+++++|..+++...+.   -+.++    ..++..|...|...|++++|.++++++....    + ..+. ...
T Consensus       332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~  411 (508)
T KOG1840|consen  332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP  411 (508)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence            66667777777777777665441   11222    2478889999999999999999999887542    1 1222 346


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCC--------CCCCh-hhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661          499 YSCMADLLGRKGKLKEALDFVQSMP--------IKSDA-GIWGTLLCACKIHRNIEIGEYVAYRLFE  556 (615)
Q Consensus       499 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~  556 (615)
                      ++.|+..|.+.+++.+|.++|.+..        ..|+. .++..|...|...|+++.|+++.++++.
T Consensus       412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            7788889999999999988887763        33333 4778899999999999999999998874

>PF13041 PPR_2: PPR repeat family

Probab=99.17  E-value=6.3e-11  Score=76.75  Aligned_cols=50  Identities=28%  Similarity=0.537  Sum_probs=45.8

Q ss_pred             CCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccC
Q 036661          221 RTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVC  270 (615)
Q Consensus       221 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  270 (615)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78899999999999999999999999999999999999999999988764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=1.6e-06  Score=82.94  Aligned_cols=124  Identities=9%  Similarity=0.001  Sum_probs=80.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCC
Q 036661           24 SQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCD  103 (615)
Q Consensus        24 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  103 (615)
                      +-++.+...+++++|.+...++...+ +-+...+..-+-++.+.+.+++|+.+.+.-.... ..+...+ .-.-+..+.+
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~f-EKAYc~Yrln   93 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFF-EKAYCEYRLN   93 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhH-HHHHHHHHcc
Confidence            34667777888888888888888765 3355667777777788888888874433211100 0111111 1122234667


Q ss_pred             ChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcC
Q 036661          104 RLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVG  150 (615)
Q Consensus       104 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  150 (615)
                      ..++|+..++...+.+..+...-...+.+.|++++|+++|+.+.+++
T Consensus        94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~  140 (652)
T KOG2376|consen   94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN  140 (652)
T ss_pred             cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            88888888885555555566666777788888888888888887765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.13  E-value=1.1e-08  Score=85.55  Aligned_cols=195  Identities=11%  Similarity=-0.013  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhh
Q 036661          396 VCNALIDMYSKCGSIGDARELFYALPEK---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACT  471 (615)
Q Consensus       396 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~  471 (615)
                      +...|.-.|...|+...|..-+++..+.   +..+|..+...|.+.|+.+.|.+.|++..+.  .|+. ...|....-+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence            3455667788888888888888887763   3457788888888888888888888888875  4544 57777777778


Q ss_pred             ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHH
Q 036661          472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEY  549 (615)
Q Consensus       472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~  549 (615)
                      ..|++++|...|++...+.....-..+|..++-+..+.|+.+.|.+.|++.. ..| .+.....+.......|++..|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            8888888888888888764444445678888888888888888888888876 334 34567777788888888888888


Q ss_pred             HHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          550 VAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       550 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      .+++...-.+-+...+-..+.+-.+.|+.+.|.++=.++...-
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f  237 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF  237 (250)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            8888877666667777777788888888888877766665443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.13  E-value=5.2e-07  Score=91.16  Aligned_cols=275  Identities=14%  Similarity=0.036  Sum_probs=154.0

Q ss_pred             HHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHh
Q 036661          311 SARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACS  387 (615)
Q Consensus       311 ~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  387 (615)
                      .|...+...   ...+...||.|.-. ...|.+.-+...|-+-... .+....+|..+.-.+....+++.|...+...+.
T Consensus       801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS  878 (1238)
T KOG1127|consen  801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS  878 (1238)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence            445555443   33345566655444 3345555554444433332 234555666666667777788888888877766


Q ss_pred             cCCCCchHHHHHHHHHHHhcCChHHHHHHHhcC-----CC---CChHHHHHHHHHHHhcCChHHHHHHHHH---------
Q 036661          388 GGLKDNVMVCNALIDMYSKCGSIGDARELFYAL-----PE---KTVVSWTTMIAGCALNGEFVEALDLFHQ---------  450 (615)
Q Consensus       388 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------  450 (615)
                      .. +.+...+-.........|+.-++..+|..-     .+   ++..-|-.........|+.++-+...+.         
T Consensus       879 Ld-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~  957 (1238)
T KOG1127|consen  879 LD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS  957 (1238)
T ss_pred             cC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence            54 334444443344444566666666666541     11   2333343334444555665544333332         


Q ss_pred             -HHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHH----HHHHHHHhcCChHHHHHHHHhCCCC
Q 036661          451 -MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYS----CMADLLGRKGKLKEALDFVQSMPIK  525 (615)
Q Consensus       451 -~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~  525 (615)
                       ... +.+.+...|...+....+.+.+..|.+...+...-....-+...|+    .+.+.++..|.++.|..-+......
T Consensus       958 ~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen  958 YYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred             HHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence             222 2233346777777777777777777777766553222222333333    4667788889999887777666533


Q ss_pred             CChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH---hHHHHHHccCChHHHHHHHHHHHh
Q 036661          526 SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV---EMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       526 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      .+..+...-+.. .-.++++++.+.|++++.+..++.....   .++......|.-+.|...+-+...
T Consensus      1037 vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred             HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence            333333322222 4468999999999999987766554333   344555566667777776655443

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=4.3e-06  Score=84.74  Aligned_cols=221  Identities=14%  Similarity=0.090  Sum_probs=129.4

Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 036661          325 VSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMY  404 (615)
Q Consensus       325 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (615)
                      ..|+.+..+-.+.|...+|++-|-+      ..|+..|..++..+.+.|.++.-..++...++..-.|.+.  ..|+-+|
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence            4677777787788887777776643      2456678888888888888888888887777765555544  4677788


Q ss_pred             HhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHH
Q 036661          405 SKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFN  484 (615)
Q Consensus       405 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  484 (615)
                      ++.+++.+.++++.   .||..-...+..-|...+.++.|.-+|....         .|..|...+...|+++.|.+.-+
T Consensus      1177 Akt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred             HHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhh
Confidence            88888777666543   3555555556666666666666654443322         24445555555555555544433


Q ss_pred             HHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661          485 LMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP  564 (615)
Q Consensus       485 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  564 (615)
                      ++       .+..+|..+..+|...+.+.-|.-.=-.  .--...-+..++..|...|-+++-+.+++..+.++.-+...
T Consensus      1245 KA-------ns~ktWK~VcfaCvd~~EFrlAQiCGL~--iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgm 1315 (1666)
T KOG0985|consen 1245 KA-------NSTKTWKEVCFACVDKEEFRLAQICGLN--IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGM 1315 (1666)
T ss_pred             hc-------cchhHHHHHHHHHhchhhhhHHHhcCce--EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHH
Confidence            32       2334555555555544443322111000  11122234455666666666666666666666666555566


Q ss_pred             hHhHHHHHHc
Q 036661          565 YVEMANIYAL  574 (615)
Q Consensus       565 ~~~l~~~~~~  574 (615)
                      +..|+-+|.+
T Consensus      1316 fTELaiLYsk 1325 (1666)
T KOG0985|consen 1316 FTELAILYSK 1325 (1666)
T ss_pred             HHHHHHHHHh
Confidence            6666555544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=4.9e-09  Score=99.36  Aligned_cols=216  Identities=12%  Similarity=0.072  Sum_probs=159.7

Q ss_pred             cccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHH
Q 036661          370 GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALD  446 (615)
Q Consensus       370 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~  446 (615)
                      .+.|++..|.-.|+..++.+ +-+...|..|.......++-..|+..+++..+   .|......|...|...|.-..|++
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            34555666666666665554 55566666666666666666666666666554   355677777777777777778888


Q ss_pred             HHHHHHHcCCCCCHHHHHHHH-----------HHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 036661          447 LFHQMMELDLRPNRVTFLAVL-----------QACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEA  515 (615)
Q Consensus       447 ~~~~~~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  515 (615)
                      .++.-+...  |..   ..+.           ..+.....+....++|-++....+..+|+.+...|+-+|.-.|++++|
T Consensus       375 ~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  375 MLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            777765542  110   0000           122223334555666666665556568888999999999999999999


Q ss_pred             HHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          516 LDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       516 ~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      .+.|+.+. .+| |...|+.|+..+....+.++|+..|.+++++.|.-..+.+.||-.|...|.|++|.+.|-..+.-
T Consensus       450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            99999987 566 56789999999998889999999999999999999999999999999999999999999887653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.07  E-value=2.4e-06  Score=83.64  Aligned_cols=354  Identities=13%  Similarity=0.059  Sum_probs=206.3

Q ss_pred             HHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhh
Q 036661          195 TWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEAL  274 (615)
Q Consensus       195 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  274 (615)
                      ..+.+......+.+|..+++.+........-|..+...|...|+++.|.++|.+.         ..++..+..|.+.|.+
T Consensus       737 kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  737 KAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence            3455666777888888888888754445556777778888889999888888653         2355567778888888


Q ss_pred             hhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036661          275 VQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAG  354 (615)
Q Consensus       275 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  354 (615)
                      +.|.++-.+..  |.......|.+-..-.-+.|++.+|++++-.+..|+.     .|..|-+.|..++.+++..+-... 
T Consensus       808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d-  879 (1636)
T KOG3616|consen  808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD-  879 (1636)
T ss_pred             HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh-
Confidence            88887766543  3334455666666777788899999998888877754     366788888888888877654321 


Q ss_pred             CCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChH-----HHH
Q 036661          355 EVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV-----SWT  429 (615)
Q Consensus       355 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~  429 (615)
                        .-..|-..+..-+...|++..|+.-|-+..+         |.+-+++|-.++-+++|.++-+.--..|..     .|.
T Consensus       880 --~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwa  948 (1636)
T KOG3616|consen  880 --HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWA  948 (1636)
T ss_pred             --hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHH
Confidence              1123555666677778888888776655432         455666777777788777776532222211     111


Q ss_pred             -------------------HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhh
Q 036661          430 -------------------TMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVY  490 (615)
Q Consensus       430 -------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  490 (615)
                                         .-+...+..+-++-|..+-+-..+.. .|.  ....+..-+...|++++|-+.+-+.++-.
T Consensus       949 ksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen  949 KSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred             HhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence                               11122233344444444433333321 122  22233344567788888877777666321


Q ss_pred             CC-------CCChhHH---------HHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHH
Q 036661          491 QV-------NPELNHY---------SCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRL  554 (615)
Q Consensus       491 ~~-------~~~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~  554 (615)
                      ..       .|+..-.         ...+..+.+..++..|.++-+.-....-+..+....+.....|++-+|+.++-++
T Consensus      1026 tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra 1105 (1636)
T KOG3616|consen 1026 TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA 1105 (1636)
T ss_pred             cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeec
Confidence            11       1111000         0112233333444444443333221111224444445555677888777665433


Q ss_pred             hccCCCCCCChHhHHHHHHccCChHHHHHHHHH
Q 036661          555 FELEPHSAAPYVEMANIYALGGRWDGVANLRTM  587 (615)
Q Consensus       555 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  587 (615)
                      -  .|+      ...+-|...+.|.+|+.+-+.
T Consensus      1106 n--kp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1106 N--KPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred             C--CCc------hHHHHHHHhccChHHHHHHHh
Confidence            2  243      334556777888888776543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.1e-07  Score=89.70  Aligned_cols=401  Identities=11%  Similarity=0.030  Sum_probs=197.9

Q ss_pred             HHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCC-cchHHHHHHHHhcCCChhh
Q 036661          163 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRT-VVSWNSIIGGCTYGDKFDD  241 (615)
Q Consensus       163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~  241 (615)
                      .+....|+++.|...|...+.... +|...|..-..+|.+.|++++|.+=-.+..+..|+ ...|+....++.-.|++++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e   88 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE   88 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence            455667788888888877776653 36667777777788888877776655555444443 5567777777777777777


Q ss_pred             HHHHHHHHHHCCCCCCH-HhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHH-----HHHHHhcCCHHHHHHH
Q 036661          242 SLNFYRHMIYDGFRPDV-TTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTL-----ISMYSKCGDIDSARFL  315 (615)
Q Consensus       242 a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~  315 (615)
                      |+.-|.+=++..  |+. ..+.-+..+..  .+... -+.+         -++..+..+     .+.+...-.+-.-+..
T Consensus        89 A~~ay~~GL~~d--~~n~~L~~gl~~a~~--~~~~~-~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~  154 (539)
T KOG0548|consen   89 AILAYSEGLEKD--PSNKQLKTGLAQAYL--EDYAA-DQLF---------TKPYFHEKLANLPLTNYSLSDPAYVKILEI  154 (539)
T ss_pred             HHHHHHHHhhcC--CchHHHHHhHHHhhh--HHHHh-hhhc---------cCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence            777777766542  333 33444444430  00000 0000         001111110     0111111111111111


Q ss_pred             HhccCCCCccc---HHHHHHHHHhcCChhH-HHHHHHHHH-HCCCCC----------------------CHHHHHHHHHh
Q 036661          316 FDGMCDRTRVS---WTAMISGYAQKGDLDE-ALRLFFAME-AAGEVP----------------------DLVTVLSMISG  368 (615)
Q Consensus       316 ~~~~~~~~~~~---~~~ll~~~~~~~~~~~-a~~~~~~~~-~~~~~~----------------------~~~~~~~ll~~  368 (615)
                      +..-+. +.-.   ...++.+.......+. ....-..+. ..+..|                      -..-...+..+
T Consensus       155 ~~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna  233 (539)
T KOG0548|consen  155 IQKNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA  233 (539)
T ss_pred             hhcCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence            111000 0000   0001111100000000 000000000 000001                      00112334444


Q ss_pred             hcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCCh---HHH-------HHHHHHHHhc
Q 036661          369 CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTV---VSW-------TTMIAGCALN  438 (615)
Q Consensus       369 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-------~~l~~~~~~~  438 (615)
                      ..+..+++.+.+-+....+..  -+..-++....+|...|.+..+...-....+.+-   .-|       ..+..+|.+.
T Consensus       234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~  311 (539)
T KOG0548|consen  234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR  311 (539)
T ss_pred             HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            444555556655555555543  3333445555556666665555444433322111   111       2233344455


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh-HHHHHHHHHHhcCChHHHHH
Q 036661          439 GEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN-HYSCMADLLGRKGKLKEALD  517 (615)
Q Consensus       439 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~  517 (615)
                      ++++.++..|++.......|+...         +....+++........   -+.|... -...-+..+.+.|++.+|+.
T Consensus       312 ~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~  379 (539)
T KOG0548|consen  312 EDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVK  379 (539)
T ss_pred             HhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence            666666666666555433332111         1112222222222221   2233321 11122556677888888888


Q ss_pred             HHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          518 FVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       518 ~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      .+.++. ..| |...|.....+|.+.|++..|+.-.++.++++|+....|..-+.++....+|++|.+.|++.++..+
T Consensus       380 ~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp  457 (539)
T KOG0548|consen  380 HYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP  457 (539)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            888876 344 4557777777888888888888888888888888888888888888888888888888877776553

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.06  E-value=2.8e-09  Score=97.86  Aligned_cols=249  Identities=11%  Similarity=0.020  Sum_probs=145.5

Q ss_pred             HHHHhcCCHHHHHHHHhccCCC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhh
Q 036661          301 SMYSKCGDIDSARFLFDGMCDR----TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALE  376 (615)
Q Consensus       301 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  376 (615)
                      +-+.-.|.+..+..-.+ ....    .......+.+++...|+++.++   .++.... .|.......+...+...++.+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            34455788888875554 2111    2224455677888888876544   3333333 566666655555555444444


Q ss_pred             HHHHHHHHHHhcCCC-CchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036661          377 LGKWFDNYACSGGLK-DNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELD  455 (615)
Q Consensus       377 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  455 (615)
                      .+..-++........ .+..........+...|++++|++++...  .+.......+..|.+.++++.|.+.++.|.+. 
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-  160 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI-  160 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence            444444433322222 23333333445566778888888888765  55666677778888888888888888888764 


Q ss_pred             CCCCHHHHHHHHHHhh----ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-Chh
Q 036661          456 LRPNRVTFLAVLQACT----HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAG  529 (615)
Q Consensus       456 ~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~  529 (615)
                       ..|.. ...+..++.    -.+.+.+|..+|+++..  ...+++.+.+.++.++...|++++|.+++.+.. ..| ++.
T Consensus       161 -~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d  236 (290)
T PF04733_consen  161 -DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD  236 (290)
T ss_dssp             -SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred             -CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence             34433 233333322    22357888888888765  345666777777777777777777777777765 223 344


Q ss_pred             hHHHHHHHHHHhCCh-hHHHHHHHHHhccCCCC
Q 036661          530 IWGTLLCACKIHRNI-EIGEYVAYRLFELEPHS  561 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p~~  561 (615)
                      ++..++-+....|+. +.+.+.+.++...+|++
T Consensus       237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  237 TLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            555666666666665 56667777777777763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=2e-07  Score=80.96  Aligned_cols=404  Identities=10%  Similarity=0.013  Sum_probs=212.6

Q ss_pred             HHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHH-HHHHhcCCChhhHH
Q 036661          165 AIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSI-IGGCTYGDKFDDSL  243 (615)
Q Consensus       165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~  243 (615)
                      +.+..++..+.+++..-.+.. +.+....+.|..+|....++..|-..++++....|...-|... ..++.+.+.+..|+
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            333344444444443333321 1144556667777777888888888888877666665555443 35566778888888


Q ss_pred             HHHHHHHHCCCCCCHHhHHHHHHh--ccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 036661          244 NFYRHMIYDGFRPDVTTVVSLLSS--CVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD  321 (615)
Q Consensus       244 ~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  321 (615)
                      ++...|...   |+...-..-+.+  ..+.+++..+..++++....   .+..+.+.......+.|+.+.|.+-|+...+
T Consensus        99 rV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlq  172 (459)
T KOG4340|consen   99 RVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQ  172 (459)
T ss_pred             HHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHh
Confidence            888777542   222211111121  12345555555555543321   2333344444455566777777776666522


Q ss_pred             C----CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHhhcccchhhHHHHHHHHHHhcCCCCc
Q 036661          322 R----TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTV----LSMISGCGQSGALELGKWFDNYACSGGLKDN  393 (615)
Q Consensus       322 ~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  393 (615)
                      -    ....||.-+. ..+.|+++.|++...+++++|++..+..-    .-.+.+ ...|+.   ..+..       ..-
T Consensus       173 vsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh~-------Sal  240 (459)
T KOG4340|consen  173 VSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLHQ-------SAL  240 (459)
T ss_pred             hcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHHH-------HHH
Confidence            1    2334554443 33456667777777777776654222100    000000 000000   00000       000


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661          394 VMVCNALIDMYSKCGSIGDARELFYALPE-----KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ  468 (615)
Q Consensus       394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  468 (615)
                      +..+|.-...+.+.|+++.|.+-+..|+.     -|++|...+.-.= ..+++.+..+-++-+.+.+ +-...||..++-
T Consensus       241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLl  318 (459)
T KOG4340|consen  241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLL  318 (459)
T ss_pred             HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHH
Confidence            12234444556788999999999999986     3666655443322 2355666666666666653 234578888899


Q ss_pred             HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHH-HhcCChHHHHHHHHhCCCCCChhhHHHHHHHH-HHhCC---
Q 036661          469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLL-GRKGKLKEALDFVQSMPIKSDAGIWGTLLCAC-KIHRN---  543 (615)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~-~~~~~---  543 (615)
                      .|++..-++-|.+++.+-....-.-.+...|+ |.+++ .-.-..++|++-+..+...-........+..- .++.+   
T Consensus       319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~  397 (459)
T KOG4340|consen  319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDE  397 (459)
T ss_pred             HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            99998888888887754321100011223333 33333 34456777776665543110000111111111 11111   


Q ss_pred             -hhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          544 -IEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       544 -~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                       ...|++-+++.+++.   ..+....+++|++..++..+.+.|+.-.+-.-
T Consensus       398 a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~  445 (459)
T KOG4340|consen  398 AIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN  445 (459)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence             223444555555543   23466778999999999999999988766543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.04  E-value=3.3e-06  Score=83.70  Aligned_cols=262  Identities=11%  Similarity=0.062  Sum_probs=124.6

Q ss_pred             ccCCCchhcHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhc-------
Q 036661           13 IYRSSTINQWNSQIR--EAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKS-------   83 (615)
Q Consensus        13 ~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------   83 (615)
                      ..+.+.. +-..+++  -|..-|+.+.|.+..+.++      +...|..+.+.|.+..+++-|.-.+..|...       
T Consensus       721 le~Cd~~-TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR  793 (1416)
T KOG3617|consen  721 LENCDES-TRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALR  793 (1416)
T ss_pred             ccccCHH-HHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHH
Confidence            3344444 4445543  5666788888887777655      3456888888888887777777666555421       


Q ss_pred             -CC-CCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHH
Q 036661           84 -PF-WSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL  161 (615)
Q Consensus        84 -~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  161 (615)
                       .. .++ ..-....-.....|.+++|+.++.+-.+     |..|=..|-..|.+.+|+++-+.--+-.+   ..||..-
T Consensus       794 ~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~y  864 (1416)
T KOG3617|consen  794 RAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNY  864 (1416)
T ss_pred             HHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHH
Confidence             00 111 1111111222344666666666655332     33444455556666666665543222111   2233333


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhh
Q 036661          162 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDD  241 (615)
Q Consensus       162 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  241 (615)
                      ..-+...+|.+.|.+.|+..-.+.    ..++..|.      .++...+.+.+.+.    +...|.-....+-..|+.+.
T Consensus       865 A~~Lear~Di~~AleyyEK~~~ha----fev~rmL~------e~p~~~e~Yv~~~~----d~~L~~WWgqYlES~Gemda  930 (1416)
T KOG3617|consen  865 AKYLEARRDIEAALEYYEKAGVHA----FEVFRMLK------EYPKQIEQYVRRKR----DESLYSWWGQYLESVGEMDA  930 (1416)
T ss_pred             HHHHHhhccHHHHHHHHHhcCChH----HHHHHHHH------hChHHHHHHHHhcc----chHHHHHHHHHHhcccchHH
Confidence            344444555555555554321110    00111100      11111122222221    22333333344445566666


Q ss_pred             HHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036661          242 SLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM  319 (615)
Q Consensus       242 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  319 (615)
                      |+.+|.....         |..+++..+-.|+.++|.++-++      .-|....-.|...|-..|++.+|..+|.+.
T Consensus       931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            6666655432         34445555555555555555443      223344445555566666666666555443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.03  E-value=3.3e-06  Score=85.61  Aligned_cols=430  Identities=12%  Similarity=0.020  Sum_probs=224.7

Q ss_pred             CCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCC-CCChHHHHH
Q 036661           16 SSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPF-WSDIFVQTT   94 (615)
Q Consensus        16 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~   94 (615)
                      ++....|..|...|+...+...|.+.|+...+.+.. +..........|++..+++.|..+.-....... ..-..-|-.
T Consensus       489 ~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~  567 (1238)
T KOG1127|consen  489 VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQ  567 (1238)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhh
Confidence            344447888888888888888888888888876543 666777788888888888888887333222110 001112233


Q ss_pred             HHHHhhcCCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHH--HHHhcC
Q 036661           95 MVDMYAKCDRLDCAYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQ--AAIHAK  169 (615)
Q Consensus        95 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~  169 (615)
                      +.-.|...++...|..-|+...+   .|...|..+..+|.+.|++..|+++|.+...  +.|+.. |.....  .-+..|
T Consensus       568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~G  644 (1238)
T KOG1127|consen  568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNG  644 (1238)
T ss_pred             ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhh
Confidence            44446667777777777777654   3677888899999999999999999987765  445432 222222  234567


Q ss_pred             ChhHHHHHHHHHHHhc------CCCccchHHHHHHHHHccCCHHHHHHHHHhcccC---------CCCcchHHHHHHHHh
Q 036661          170 HLSLLKSVHSFGIHIG------VDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG---------LRTVVSWNSIIGGCT  234 (615)
Q Consensus       170 ~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~li~~~~  234 (615)
                      .+.++...+...+..-      ..--..++..+...+...|=...|..+++.-.+.         ..+...|..+-.+|.
T Consensus       645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~  724 (1238)
T KOG1127|consen  645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACY  724 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence            7777777777665421      1111122222222222223233333333221110         112222222211110


Q ss_pred             ---cCC--Ch-hhHHHH-HHHHHHCCCCCC--------------------HHhHHHHHHhc-------cCch-hhhhhhH
Q 036661          235 ---YGD--KF-DDSLNF-YRHMIYDGFRPD--------------------VTTVVSLLSSC-------VCPE-ALVQGRL  279 (615)
Q Consensus       235 ---~~~--~~-~~a~~~-~~~m~~~~~~p~--------------------~~~~~~ll~~~-------~~~~-~~~~a~~  279 (615)
                         ...  -+ .....+ +.+....+.-|+                    ..++..+...+       ...+ +...|..
T Consensus       725 ~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~  804 (1238)
T KOG1127|consen  725 IFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIR  804 (1238)
T ss_pred             HHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHH
Confidence               000  00 000011 111111121111                    12222222111       1111 1224444


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036661          280 VHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEV  356 (615)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  356 (615)
                      .+...++.. ..+...++.|.- ....|.+.-+...|-..   .+.+..+|..+...+.+..+++-|...|...+... +
T Consensus       805 c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P  881 (1238)
T KOG1127|consen  805 CCKKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-P  881 (1238)
T ss_pred             HHHHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcC-c
Confidence            444444332 223344444433 35556777777776554   33456678888888889999999999998877642 3


Q ss_pred             CCHHHHHHHHHhhcccchhhHHHHHHHHHH----hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC----------
Q 036661          357 PDLVTVLSMISGCGQSGALELGKWFDNYAC----SGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE----------  422 (615)
Q Consensus       357 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------  422 (615)
                      .|...+..........|+.-+...++..-.    ..|--+...-+.+........|+.++-+...+.+..          
T Consensus       882 ~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~  961 (1238)
T KOG1127|consen  882 LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL  961 (1238)
T ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh
Confidence            444455444444445565555666655521    133344444444444555566666665555554443          


Q ss_pred             --C-ChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 036661          423 --K-TVVSWTTMIAGCALNGEFVEALDLFHQMM  452 (615)
Q Consensus       423 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  452 (615)
                        | +...|.+.+...-..+.+..|.+...+++
T Consensus       962 ~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  962 GHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence              1 23455555555555666666666655543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.03  E-value=3.5e-07  Score=81.16  Aligned_cols=296  Identities=11%  Similarity=0.029  Sum_probs=131.9

Q ss_pred             HHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCcc-cHHHHHHHHHhc
Q 036661          261 VVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC--DRTRV-SWTAMISGYAQK  337 (615)
Q Consensus       261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~-~~~~ll~~~~~~  337 (615)
                      ...+...+...|++..|..-|...++.+ +.+-.++-.-...|...|+...|+.-+.++.  +||.. .-..-...+.+.
T Consensus        41 hlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~  119 (504)
T KOG0624|consen   41 HLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ  119 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence            3344444555555555555555444322 1111222223345555555555555555542  22221 111122345566


Q ss_pred             CChhHHHHHHHHHHHCCCCCCH--H------------HHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 036661          338 GDLDEALRLFFAMEAAGEVPDL--V------------TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDM  403 (615)
Q Consensus       338 ~~~~~a~~~~~~~~~~~~~~~~--~------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  403 (615)
                      |.++.|..-|+..++....-+.  .            .....+..+...|+...++.....+.+.. +.+...+..-..+
T Consensus       120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc  198 (504)
T KOG0624|consen  120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC  198 (504)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence            6666666666666554321100  0            01122233344455555555555555543 4455555555555


Q ss_pred             HHhcCChHHHHHHHhcC---CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-H---HHH---------H
Q 036661          404 YSKCGSIGDARELFYAL---PEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVT-F---LAV---------L  467 (615)
Q Consensus       404 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~---~~l---------~  467 (615)
                      |...|++..|+.-++..   ...+...+..+-..+...|+.+.++...++-.+.  .||... |   ..|         +
T Consensus       199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~  276 (504)
T KOG0624|consen  199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESA  276 (504)
T ss_pred             HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHH
Confidence            55555555555444332   2344444545555555555555555555555543  444321 1   111         0


Q ss_pred             HHhhccCchHHHHHHHHHHHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHH
Q 036661          468 QACTHAGFLEKGWGYFNLMTKVYQVNPE-----LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKI  540 (615)
Q Consensus       468 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~  540 (615)
                      ......++|.++++..+...+.   .|.     ...+..+..++...|++.+|++...++. ..|+ ..++-....+|.-
T Consensus       277 e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~  353 (504)
T KOG0624|consen  277 EQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG  353 (504)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence            1122234444444444444321   222     1223334444444555555555555544 3333 3344444445554


Q ss_pred             hCChhHHHHHHHHHhccCCCCCC
Q 036661          541 HRNIEIGEYVAYRLFELEPHSAA  563 (615)
Q Consensus       541 ~~~~~~A~~~~~~~~~~~p~~~~  563 (615)
                      ...++.|+.-|+++.+.+|++..
T Consensus       354 dE~YD~AI~dye~A~e~n~sn~~  376 (504)
T KOG0624|consen  354 DEMYDDAIHDYEKALELNESNTR  376 (504)
T ss_pred             hHHHHHHHHHHHHHHhcCcccHH
Confidence            55555555555555555555433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.2e-06  Score=82.86  Aligned_cols=428  Identities=12%  Similarity=-0.001  Sum_probs=257.6

Q ss_pred             HHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCcc-chHHHHHHHHHccCCH
Q 036661          128 VGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADV-SVCNTWISAYAKCNDL  206 (615)
Q Consensus       128 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~  206 (615)
                      .+....|+++.|+.+|.+..... ++|...|+.=..+++..|+++.|.+=-..-++.  .|+. ..|+....++.-.|++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence            45567899999999999988754 336677888889999999999998777666654  5665 4799999999999999


Q ss_pred             HHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHH-HHHHHH-HHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHH
Q 036661          207 KMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSL-NFYRHM-IYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSH  283 (615)
Q Consensus       207 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~-~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  283 (615)
                      ++|...|.+-.+..| +...++-+..++    ..+.+. +.|..- .-.++.-++.|-     .......+.   .++..
T Consensus        87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~-----~~~~~~~~~---~~l~~  154 (539)
T KOG0548|consen   87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTN-----YSLSDPAYV---KILEI  154 (539)
T ss_pred             HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhh-----hhhccHHHH---HHHHH
Confidence            999999998776655 455666666665    111111 111000 000111122111     111111111   11111


Q ss_pred             HHHh----cCCC-ChhHHHHHHHHHHhcCCHHH-HHHHHhc-----cCCC------------C----------cccHHHH
Q 036661          284 GIHY----GFDL-DVSVINTLISMYSKCGDIDS-ARFLFDG-----MCDR------------T----------RVSWTAM  330 (615)
Q Consensus       284 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~-a~~~~~~-----~~~~------------~----------~~~~~~l  330 (615)
                      +...    +... ++.    ++.+.......+. ....-..     +..|            |          ......+
T Consensus       155 ~~~~p~~l~~~l~d~r----~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l  230 (539)
T KOG0548|consen  155 IQKNPTSLKLYLNDPR----LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL  230 (539)
T ss_pred             hhcCcHhhhcccccHH----HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence            1110    0000 111    1111111100000 0000000     0011            0          0124456


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCC------chHHHHHHHHHH
Q 036661          331 ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKD------NVMVCNALIDMY  404 (615)
Q Consensus       331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~  404 (615)
                      ....-+..++..|++.+....+..  -+..-++....++...|........-....+.|...      =...+..+..+|
T Consensus       231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~  308 (539)
T KOG0548|consen  231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY  308 (539)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence            667777788889999988887753  344444555556777776666655555444433111      011222244467


Q ss_pred             HhcCChHHHHHHHhcCCCC--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHH
Q 036661          405 SKCGSIGDARELFYALPEK--TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWG  481 (615)
Q Consensus       405 ~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~  481 (615)
                      .+.++++.+...|++...+  ++.+       ..+.+..+++++..+...-.  .|.. .-...-...+.+.|++..|+.
T Consensus       309 ~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~  379 (539)
T KOG0548|consen  309 TKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVK  379 (539)
T ss_pred             hhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHH
Confidence            7788899999998875442  2111       22334556666655555443  4443 223333677889999999999


Q ss_pred             HHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661          482 YFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEP  559 (615)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  559 (615)
                      .|.++++.  .+-|...|...+-+|.+.|.+..|+.-.+... ..|+ ...|..-+.++..-.++++|.+.|+++++.+|
T Consensus       380 ~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp  457 (539)
T KOG0548|consen  380 HYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP  457 (539)
T ss_pred             HHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999864  35567789999999999999999999888776 4444 44565556666677899999999999999999


Q ss_pred             CCCCChHhHHHHHHccCChHHHHHHHHH
Q 036661          560 HSAAPYVEMANIYALGGRWDGVANLRTM  587 (615)
Q Consensus       560 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~  587 (615)
                      ++..+...+.+++..+..-....++.++
T Consensus       458 ~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  458 SNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             hhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence            9988888888887764444444444443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.01  E-value=1.9e-07  Score=92.32  Aligned_cols=303  Identities=12%  Similarity=0.054  Sum_probs=160.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHh------c
Q 036661          162 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCT------Y  235 (615)
Q Consensus       162 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~------~  235 (615)
                      ...+...|+++.|.+.++.-.+. +.............+.+.|+.++|..++..+....|+...|...+..+.      .
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc
Confidence            34456778888888887664443 2333456667777888888888888888887777666555554444333      1


Q ss_pred             CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhh-hhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036661          236 GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEAL-VQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARF  314 (615)
Q Consensus       236 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  314 (615)
                      ....+...++++++...-  |.......+.-.+.....+ ..+..++..+...|+|+   +|+.|-..|......+-..+
T Consensus        90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence            224566677777776543  4444433333233332222 23445555555556432   34444444443333322222


Q ss_pred             HHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHhhcccchhhHHHHHHHHHHhcCCCC
Q 036661          315 LFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDL--VTVLSMISGCGQSGALELGKWFDNYACSGGLKD  392 (615)
Q Consensus       315 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  392 (615)
                      ++.....           .....+.+....      ....-+|..  .++..+...|...|++++|.++++..++.. +-
T Consensus       165 l~~~~~~-----------~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt  226 (517)
T PF12569_consen  165 LVEEYVN-----------SLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PT  226 (517)
T ss_pred             HHHHHHH-----------hhcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CC
Confidence            2222100           000000000000      000112333  233444555666677777777777666654 33


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH------H
Q 036661          393 NVMVCNALIDMYSKCGSIGDARELFYALPEK---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVT------F  463 (615)
Q Consensus       393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~------~  463 (615)
                      .+..|..-...+-+.|++.+|.+.++....-   |-..-+..+..+.+.|+.++|.+++......+..|-...      |
T Consensus       227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W  306 (517)
T PF12569_consen  227 LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW  306 (517)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence            3556666666777777777777776665553   334555566666677777777777766665543332211      1


Q ss_pred             --HHHHHHhhccCchHHHHHHHHHHHH
Q 036661          464 --LAVLQACTHAGFLEKGWGYFNLMTK  488 (615)
Q Consensus       464 --~~l~~~~~~~~~~~~a~~~~~~~~~  488 (615)
                        .-...+|.+.|++..|++.|..+.+
T Consensus       307 f~~e~a~a~~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  307 FETECAEAYLRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence              2234567777777777766665554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=1.9e-06  Score=75.14  Aligned_cols=315  Identities=10%  Similarity=-0.047  Sum_probs=156.3

Q ss_pred             HHHHHHHhhcCCChhHHHHhhccCCCC---CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHH-HHHHHh
Q 036661           92 QTTMVDMYAKCDRLDCAYKLFDKMPDR---DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL-TQAAIH  167 (615)
Q Consensus        92 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~  167 (615)
                      +++.+..+.+..+++.|++++..-.++   +....+.|..+|-...++..|-++++++-..  .|...-|..- ...+.+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK   90 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence            444555556666666666666555442   4445666666666777777777777766552  3444444321 233445


Q ss_pred             cCChhHHHHHHHHHHHhcCCCccchHHHHHHH--HHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHH
Q 036661          168 AKHLSLLKSVHSFGIHIGVDADVSVCNTWISA--YAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNF  245 (615)
Q Consensus       168 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  245 (615)
                      .+.+..|.++...|.+.   |+...-..-+.+  ....+++..+..+.++.+. ..+..+.+.......+.|+++.|++-
T Consensus        91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~-en~Ad~~in~gCllykegqyEaAvqk  166 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS-ENEADGQINLGCLLYKEGQYEAAVQK  166 (459)
T ss_pred             hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC-CCccchhccchheeeccccHHHHHHH
Confidence            56666666666655431   121111111222  2235666677777776663 12333344444445567777777777


Q ss_pred             HHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhH----HHHHHHHHHhcCCHHHHHHHHhccCC
Q 036661          246 YRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSV----INTLISMYSKCGDIDSARFLFDGMCD  321 (615)
Q Consensus       246 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~  321 (615)
                      |+...+-+---....|+..+. ..+.++.+.|....++++++|++..+..    ....+++-.-.+-...+..-      
T Consensus       167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa------  239 (459)
T KOG4340|consen  167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA------  239 (459)
T ss_pred             HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH------
Confidence            777766543333445554443 3355677777777777777665322110    00000000000000000000      


Q ss_pred             CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHH
Q 036661          322 RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAG-EVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNAL  400 (615)
Q Consensus       322 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  400 (615)
                       =+..+|.-...+.+.++++.|.+.+..|.-+. ...|++|...+.-.-. .+++-...+-+..+...+ +....+|..+
T Consensus       240 -l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANl  316 (459)
T KOG4340|consen  240 -LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANL  316 (459)
T ss_pred             -HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence             01123333444555666666666665553221 2345555544432221 122333333344444433 3445666677


Q ss_pred             HHHHHhcCChHHHHHHHhcCCC
Q 036661          401 IDMYSKCGSIGDARELFYALPE  422 (615)
Q Consensus       401 ~~~~~~~g~~~~A~~~~~~~~~  422 (615)
                      +-.|++..-++.|..++.+-..
T Consensus       317 LllyCKNeyf~lAADvLAEn~~  338 (459)
T KOG4340|consen  317 LLLYCKNEYFDLAADVLAENAH  338 (459)
T ss_pred             HHHHhhhHHHhHHHHHHhhCcc
Confidence            7777777777777777665444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.00  E-value=2.8e-08  Score=90.30  Aligned_cols=180  Identities=13%  Similarity=0.081  Sum_probs=109.6

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Ch---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HH
Q 036661          393 NVMVCNALIDMYSKCGSIGDARELFYALPE--K-TV---VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR----VT  462 (615)
Q Consensus       393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~  462 (615)
                      ....+..+...+...|+++.|...|+++..  | +.   .++..+..++...|++++|+..++++.+.  .|+.    .+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence            344555566666666666666666665543  2 11   34555666666666666666666666654  2221    13


Q ss_pred             HHHHHHHhhcc--------CchHHHHHHHHHHHHhhCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHH
Q 036661          463 FLAVLQACTHA--------GFLEKGWGYFNLMTKVYQVNPELN-HYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGT  533 (615)
Q Consensus       463 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~  533 (615)
                      +..+..++...        |++++|.+.++.+.+.   .|+.. .+..+...    +......           ......
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~  171 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY  171 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence            34444444433        5566666666666543   23321 11111110    0000000           001124


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhccCCCCC---CChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          534 LLCACKIHRNIEIGEYVAYRLFELEPHSA---APYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      +...+...|++++|...++++++..|+++   ..+..++.+|...|++++|.++++.+....
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            56678889999999999999999988754   688999999999999999999999987765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.00  E-value=6.3e-08  Score=89.00  Aligned_cols=246  Identities=11%  Similarity=0.056  Sum_probs=149.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 036661          332 SGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG  411 (615)
Q Consensus       332 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  411 (615)
                      +.+.-.|++..++.-.+ ........+......+.+++...|+.+.+   +..+.... +|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            44555777877776555 22222122333444566677777765543   33333333 566666655555554445555


Q ss_pred             HHHHHHhcCC-CC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHH
Q 036661          412 DARELFYALP-EK----TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLM  486 (615)
Q Consensus       412 ~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  486 (615)
                      .+..-+++.. .+    +..........+...|++++|++++++.      .+.......+..|.+.++++.|.+.++.|
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6665555433 22    2222222234455678888888777542      34556666777888888888888888888


Q ss_pred             HHhhCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          487 TKVYQVNPELNHYSCMADLLG----RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       487 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      .   .+..|. +...++.++.    -..++.+|..+|+++.  ..+++.+++.++.++...|++++|+..++++++.+|+
T Consensus       158 ~---~~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  158 Q---QIDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             H---CCSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             H---hcCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence            7   334443 3333444333    2336888888888876  4456667777888888888888888888888888888


Q ss_pred             CCCChHhHHHHHHccCCh-HHHHHHHHHHHhcC
Q 036661          561 SAAPYVEMANIYALGGRW-DGVANLRTMMKRNQ  592 (615)
Q Consensus       561 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~  592 (615)
                      ++.+..+++-+....|+. +.+.+++.++.+..
T Consensus       234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~  266 (290)
T PF04733_consen  234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN  266 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred             CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence            888888888888888887 66777787776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.99  E-value=3.5e-08  Score=85.52  Aligned_cols=150  Identities=7%  Similarity=0.075  Sum_probs=106.0

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCh
Q 036661          433 AGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKL  512 (615)
Q Consensus       433 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  512 (615)
                      -.|...|+++.+....+.+..    |.        ..+...++.+++...++...+  .-+.+...|..++..|...|++
T Consensus        24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence            456677777665433322211    11        012235666777777777664  3345567788888888888888


Q ss_pred             HHHHHHHHhCC-CCC-ChhhHHHHHHHH-HHhCC--hhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHH
Q 036661          513 KEALDFVQSMP-IKS-DAGIWGTLLCAC-KIHRN--IEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTM  587 (615)
Q Consensus       513 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  587 (615)
                      ++|...+++.. ..| +...+..+..++ ...|+  .++|.++++++++.+|+++.++..++..+...|++++|+..|++
T Consensus        90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~  169 (198)
T PRK10370         90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK  169 (198)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            88888888876 444 455666677653 56666  58899999999999999999999999999999999999999999


Q ss_pred             HHhcCcccC
Q 036661          588 MKRNQVKKF  596 (615)
Q Consensus       588 ~~~~~~~~~  596 (615)
                      +.+.....+
T Consensus       170 aL~l~~~~~  178 (198)
T PRK10370        170 VLDLNSPRV  178 (198)
T ss_pred             HHhhCCCCc
Confidence            887665433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.99  E-value=1.2e-06  Score=85.31  Aligned_cols=296  Identities=11%  Similarity=-0.052  Sum_probs=173.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhcc---CCCCccc---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---H
Q 036661          295 VINTLISMYSKCGDIDSARFLFDGM---CDRTRVS---WTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLS---M  365 (615)
Q Consensus       295 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l  365 (615)
                      .+..+...+...|+.+.+...+...   .+.+...   .......+...|++++|.+.+++..+.. +.+...+..   .
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~   86 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA   86 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence            3444455555556666654444443   1122111   2222334566788888888888877652 333333331   1


Q ss_pred             HHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChH
Q 036661          366 ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFV  442 (615)
Q Consensus       366 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~  442 (615)
                      .......+..+.+.+.+.. .....+........+...+...|++++|.+.+++..+   .+...+..+..++...|+++
T Consensus        87 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~  165 (355)
T cd05804          87 FGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK  165 (355)
T ss_pred             HHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence            1112223444555554443 1122233344455666778889999999999887765   34567788888889999999


Q ss_pred             HHHHHHHHHHHcCC-CCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHH-H--HHHHHHHhcCChHHHH
Q 036661          443 EALDLFHQMMELDL-RPNR--VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHY-S--CMADLLGRKGKLKEAL  516 (615)
Q Consensus       443 ~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~  516 (615)
                      +|...+++...... .|+.  ..+..+...+...|++++|..++++........+..... +  .+...+...|....+.
T Consensus       166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~  245 (355)
T cd05804         166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD  245 (355)
T ss_pred             HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence            99999998887531 1232  245567788889999999999999876321111111111 1  2233334445333333


Q ss_pred             HH--H-HhCC-CCCC---hhhHHHHHHHHHHhCChhHHHHHHHHHhccCC---------CCCCChHhHHHHHHccCChHH
Q 036661          517 DF--V-QSMP-IKSD---AGIWGTLLCACKIHRNIEIGEYVAYRLFELEP---------HSAAPYVEMANIYALGGRWDG  580 (615)
Q Consensus       517 ~~--~-~~~~-~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~  580 (615)
                      ++  + .... ..|.   .........++...|+.++|...++.+....-         .........+.++.+.|++++
T Consensus       246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~  325 (355)
T cd05804         246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT  325 (355)
T ss_pred             HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence            32  1 1111 1111   12223455667778899999999888755221         124455667888999999999


Q ss_pred             HHHHHHHHHhcC
Q 036661          581 VANLRTMMKRNQ  592 (615)
Q Consensus       581 A~~~~~~~~~~~  592 (615)
                      |.+.+.......
T Consensus       326 A~~~L~~al~~a  337 (355)
T cd05804         326 ALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHHHH
Confidence            999998887644

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.93  E-value=1.3e-08  Score=83.40  Aligned_cols=105  Identities=10%  Similarity=-0.117  Sum_probs=48.9

Q ss_pred             HHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCC
Q 036661          466 VLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRN  543 (615)
Q Consensus       466 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~  543 (615)
                      +..++...|++++|...|+.+..  --+.+...+..++.++.+.|++++|...|+++.  .+.+...+..++.++...|+
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence            34444455555555555555442  112233444444555555555555555554443  22233344444444444555


Q ss_pred             hhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661          544 IEIGEYVAYRLFELEPHSAAPYVEMANIY  572 (615)
Q Consensus       544 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  572 (615)
                      .++|+..+++++++.|+++..+...+.+.
T Consensus       108 ~~eAi~~~~~Al~~~p~~~~~~~~~~~~~  136 (144)
T PRK15359        108 PGLAREAFQTAIKMSYADASWSEIRQNAQ  136 (144)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            55555555555555555554444444443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.93  E-value=1.4e-06  Score=77.42  Aligned_cols=287  Identities=9%  Similarity=0.046  Sum_probs=187.3

Q ss_pred             chHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHH---HhccCchhhhhhhHHHHHHHHhcCCCChhH-HHHH
Q 036661          224 VSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLL---SSCVCPEALVQGRLVHSHGIHYGFDLDVSV-INTL  299 (615)
Q Consensus       224 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l  299 (615)
                      .-.--+...+...|++..|+.-|...++    .|+..|..+.   ..|...|....|..=+...++.  +||-.. ...-
T Consensus        39 ekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR  112 (504)
T KOG0624|consen   39 EKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR  112 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence            3344556677778888888888877765    4444444444   3466677777777666666654  455322 2233


Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCCcc------------------cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036661          300 ISMYSKCGDIDSARFLFDGMCDRTRV------------------SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVT  361 (615)
Q Consensus       300 ~~~~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  361 (615)
                      ...+.+.|.++.|..-|+.+.+.++.                  .....+..+...|+...|+.....+++. .+-|...
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l  191 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASL  191 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHH
Confidence            45677888888888888877433221                  1223345566678888888888888775 2456666


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChH----HHHH---HH
Q 036661          362 VLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KTVV----SWTT---MI  432 (615)
Q Consensus       362 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~---l~  432 (615)
                      +..-..+|...|++..|+.=++...+.. ..++..+.-+-..+...|+.+.++...++..+  |+..    .|-.   +.
T Consensus       192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~  270 (504)
T KOG0624|consen  192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV  270 (504)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence            6667777888888888877777666654 44555566667777788888888888877766  3321    2222   22


Q ss_pred             HHH------HhcCChHHHHHHHHHHHHcCCCCCH--H---HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHH
Q 036661          433 AGC------ALNGEFVEALDLFHQMMELDLRPNR--V---TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYS  500 (615)
Q Consensus       433 ~~~------~~~~~~~~a~~~~~~~~~~~~~p~~--~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~  500 (615)
                      ..+      ...++|.++++..+...+.  .|..  .   .+..+-.++...+++.+|++...++.   .+.|+ +.++-
T Consensus       271 K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~  345 (504)
T KOG0624|consen  271 KSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLC  345 (504)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHH
Confidence            222      2356677777777777765  3442  2   33445556677778888888888777   44565 67777


Q ss_pred             HHHHHHHhcCChHHHHHHHHhCC
Q 036661          501 CMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       501 ~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      .-+.+|.-...+++|+.-|+++.
T Consensus       346 dRAeA~l~dE~YD~AI~dye~A~  368 (504)
T KOG0624|consen  346 DRAEAYLGDEMYDDAIHDYEKAL  368 (504)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHH
Confidence            77788888888888888888776

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.90  E-value=5.9e-06  Score=91.51  Aligned_cols=323  Identities=11%  Similarity=-0.019  Sum_probs=199.3

Q ss_pred             CchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC----CCC---c---c--cHHHHHHHHHhc
Q 036661          270 CPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC----DRT---R---V--SWTAMISGYAQK  337 (615)
Q Consensus       270 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~---~---~--~~~~ll~~~~~~  337 (615)
                      ..|+.+.+..++..+.......++.........+...|+++++...+....    ..+   .   .  ....+...+...
T Consensus       386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  465 (903)
T PRK04841        386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND  465 (903)
T ss_pred             hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence            345555555555544221112233333445556667888888888776541    111   1   1  112233445678


Q ss_pred             CChhHHHHHHHHHHHCCCCCCH----HHHHHHHHhhcccchhhHHHHHHHHHHhc----CC-CCchHHHHHHHHHHHhcC
Q 036661          338 GDLDEALRLFFAMEAAGEVPDL----VTVLSMISGCGQSGALELGKWFDNYACSG----GL-KDNVMVCNALIDMYSKCG  408 (615)
Q Consensus       338 ~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g  408 (615)
                      |++++|...+++....-...+.    .....+...+...|+++.|...+......    +. ......+..+...+...|
T Consensus       466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G  545 (903)
T PRK04841        466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG  545 (903)
T ss_pred             CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence            9999999999887653111121    23344555567789999998888877642    21 111234556677788899


Q ss_pred             ChHHHHHHHhcCCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHhhcc
Q 036661          409 SIGDARELFYALPE-------K----TVVSWTTMIAGCALNGEFVEALDLFHQMMELD--LRPN--RVTFLAVLQACTHA  473 (615)
Q Consensus       409 ~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~  473 (615)
                      +++.|...+++...       +    ....+..+...+...|++++|...+++.....  ..+.  ...+..+...+...
T Consensus       546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~  625 (903)
T PRK04841        546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR  625 (903)
T ss_pred             CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence            99999888776433       1    11234455666777899999999888876531  1222  23445566677889


Q ss_pred             CchHHHHHHHHHHHHhhCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCC-C-CChh----hHHHHHHHHHHhC
Q 036661          474 GFLEKGWGYFNLMTKVYQVNPELNHY-----SCMADLLGRKGKLKEALDFVQSMPI-K-SDAG----IWGTLLCACKIHR  542 (615)
Q Consensus       474 ~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~----~~~~l~~~~~~~~  542 (615)
                      |++++|...+...............+     ......+...|+.+.|..++..... . ....    .+..+..++...|
T Consensus       626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g  705 (903)
T PRK04841        626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG  705 (903)
T ss_pred             CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence            99999999888875421111111111     1122445568899999999877651 1 1111    1345666778889


Q ss_pred             ChhHHHHHHHHHhccCC------CCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          543 NIEIGEYVAYRLFELEP------HSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       543 ~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      +.++|...++++++...      .....+..++.+|.+.|+.++|.+.+.+..+..
T Consensus       706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999887532      123467778899999999999999999887644

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.86  E-value=3.8e-08  Score=80.62  Aligned_cols=110  Identities=8%  Similarity=-0.057  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCChhhHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661          480 WGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-I-KSDAGIWGTLLCACKIHRNIEIGEYVAYRLFEL  557 (615)
Q Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  557 (615)
                      ..++++..   .+.|+.  +..++..+...|++++|...|+... . +.+...+..++.++...|++++|...|++++++
T Consensus        13 ~~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            45566666   335553  5567889999999999999999987 4 446778899999999999999999999999999


Q ss_pred             CCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          558 EPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       558 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      +|+++..+..+|.++...|++++|++.+++..+..+.
T Consensus        88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359         88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999886653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.85  E-value=1.9e-07  Score=95.99  Aligned_cols=127  Identities=14%  Similarity=0.001  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHH
Q 036661          460 RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLC  536 (615)
Q Consensus       460 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~  536 (615)
                      ...+..|.....+.|.+++|..+++...   .+.|+. .....++.++.+.+++++|+..+++.. ..|+ ......+..
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~  162 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK  162 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence            4444445555555555555555555554   223332 233344455555555555555555544 3332 223334444


Q ss_pred             HHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661          537 ACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       537 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                      ++.+.|++++|..+|++++..+|+++.++..++.++...|+.++|...|++..
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~  215 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL  215 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.80  E-value=5.3e-07  Score=94.24  Aligned_cols=199  Identities=12%  Similarity=0.086  Sum_probs=164.2

Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHhcCCCC--------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-H
Q 036661          391 KDNVMVCNALIDMYSKCGSIGDARELFYALPEK--------TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-V  461 (615)
Q Consensus       391 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~  461 (615)
                      |.+...|-..|......++.++|+++.++....        -...|.+++..-...|.-+...++|+++.+-   -|+ .
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence            556677788888888999999999999887651        2357888888777778888889999999874   343 5


Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---hhhHHHHHHH
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD---AGIWGTLLCA  537 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~  537 (615)
                      .|..|...|.+.+.+++|.++++.|.+.++  ....+|..+++.+.+..+-+.|.+++.++. .-|.   .......+..
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            788889999999999999999999998766  667789999999999999999999998876 3333   3455556666


Q ss_pred             HHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          538 CKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       538 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      -.+.|+.+.++.+|+..+...|.....|..+++.-.+.|+.+.++.+|+++...+..
T Consensus      1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            678999999999999999999999999999999999999999999999999887654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.79  E-value=1.1e-05  Score=78.60  Aligned_cols=266  Identities=13%  Similarity=0.060  Sum_probs=169.5

Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHH-HHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHH---
Q 036661          325 VSWTAMISGYAQKGDLDEALRLFFAMEAAG-EVPDLVTVL-SMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNA---  399 (615)
Q Consensus       325 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---  399 (615)
                      ..|..+...+...|+.+.+...+....... ..++..... .....+...|+++.|..+++...+.. +.+...+..   
T Consensus         7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~   85 (355)
T cd05804           7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG   85 (355)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence            356666677777788888777776655432 122332222 22334567789999999999988764 444444432   


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCch
Q 036661          400 LIDMYSKCGSIGDARELFYALPEK---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFL  476 (615)
Q Consensus       400 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~  476 (615)
                      +.......+....+.+.+......   .......+...+...|++++|...+++..+.. +.+...+..+..++...|++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~  164 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF  164 (355)
T ss_pred             HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence            222222345666677766653332   23345566678899999999999999999973 44456778888899999999


Q ss_pred             HHHHHHHHHHHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHH------HHHHHHHHhCChhHH
Q 036661          477 EKGWGYFNLMTKVYQVNPEL--NHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWG------TLLCACKIHRNIEIG  547 (615)
Q Consensus       477 ~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~------~l~~~~~~~~~~~~A  547 (615)
                      ++|..++++........|+.  ..|..++..+...|++++|..++++.. ..|....+.      .+..-+...|....+
T Consensus       165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  244 (355)
T cd05804         165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG  244 (355)
T ss_pred             HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence            99999999988532222332  345578899999999999999999975 333112111      222333344544443


Q ss_pred             HHH---HHHHhccCCCC--CCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          548 EYV---AYRLFELEPHS--AAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       548 ~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      .+.   ........|..  ...-...+.++...|+.++|...++.+....
T Consensus       245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~  294 (355)
T cd05804         245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA  294 (355)
T ss_pred             HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            333   22211111221  1222356788899999999999999987644

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.78  E-value=4.6e-07  Score=77.94  Aligned_cols=155  Identities=11%  Similarity=0.136  Sum_probs=97.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 036661          429 TTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR  508 (615)
Q Consensus       429 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  508 (615)
                      ..+-..+...|+-+....+....... ..-|......++....+.|++..|...+++...  .-++|...|+.++-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence            44555566666666666665554432 122334444466666667777777777777664  445666677777777777


Q ss_pred             cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHH
Q 036661          509 KGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRT  586 (615)
Q Consensus       509 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  586 (615)
                      .|++++|..-|.+..  ..-++...+.+...+.-.|+.+.|+.++..+....+.+..+-.+|+.+....|++++|..+..
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            777777776666654  333445566666666667777777777777776666666677777777777777777766654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.76  E-value=1.1e-06  Score=86.04  Aligned_cols=219  Identities=9%  Similarity=-0.047  Sum_probs=154.5

Q ss_pred             CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHH
Q 036661          357 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAG  434 (615)
Q Consensus       357 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~  434 (615)
                      |--..-..+...+...|-...|..+++++.         .+..++.+|...|+..+|..+..+..+  |++..|..+++.
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDV  466 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhh
Confidence            333333445555666677777777776543         345567777777777777776654443  566677777766


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 036661          435 CALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE  514 (615)
Q Consensus       435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  514 (615)
                      .....-+++|.++.+.....       .-..+.....+.+++.++.+.|+.-.+-  -+....+|-.+..+..+.++++.
T Consensus       467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHH
Confidence            66666666666666554332       1112222233467788888887776642  12345678888888889999999


Q ss_pred             HHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          515 ALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       515 A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      |.+.|.... ..|+ ...|+.+..+|.+.|+-.+|...++++++-+-++..+|.+..-+..+.|.|++|.+.+.++.+-.
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            999888876 5554 56899999999999999999999999999888888899999889999999999999999887744


Q ss_pred             c
Q 036661          593 V  593 (615)
Q Consensus       593 ~  593 (615)
                      .
T Consensus       618 ~  618 (777)
T KOG1128|consen  618 K  618 (777)
T ss_pred             h
Confidence            4

>PLN02789 farnesyltranstransferase

Probab=98.75  E-value=3.2e-06  Score=78.90  Aligned_cols=178  Identities=11%  Similarity=0.087  Sum_probs=117.8

Q ss_pred             ChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHH
Q 036661          409 SIGDARELFYALPE---KTVVSWTTMIAGCALNGEF--VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYF  483 (615)
Q Consensus       409 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  483 (615)
                      ++++++..++++..   .+..+|+.....+.+.++.  ++++.+++++.+.+ +-|..+|.....++...|+++++++.+
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~  165 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC  165 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            35666666655543   2334555544444444542  56777777777753 334567777777777888888888888


Q ss_pred             HHHHHhhCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHhCC-CCC-ChhhHHHHHHHHHHh----CChhHHHHH
Q 036661          484 NLMTKVYQVNPELNHYSCMADLLGRK---GKL----KEALDFVQSMP-IKS-DAGIWGTLLCACKIH----RNIEIGEYV  550 (615)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~----~~~~~A~~~  550 (615)
                      +++++.  -+-+...|+....++.+.   |..    ++++++..++. ..| +...|..+...+...    ++..+|...
T Consensus       166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~  243 (320)
T PLN02789        166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV  243 (320)
T ss_pred             HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence            888753  123345566655555444   222    45666665554 344 566788777777663    455778899


Q ss_pred             HHHHhccCCCCCCChHhHHHHHHccC------------------ChHHHHHHHHHHH
Q 036661          551 AYRLFELEPHSAAPYVEMANIYALGG------------------RWDGVANLRTMMK  589 (615)
Q Consensus       551 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~  589 (615)
                      ..++++.+|+++.++..|+++|....                  ..++|.++++.+.
T Consensus       244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            99999999999999999999998643                  3477888888884

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.72  E-value=1.3e-05  Score=88.68  Aligned_cols=326  Identities=12%  Similarity=-0.010  Sum_probs=203.0

Q ss_pred             HhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcC------CCC--hhHHHHHHHHHH
Q 036661          233 CTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGF------DLD--VSVINTLISMYS  304 (615)
Q Consensus       233 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~  304 (615)
                      ....|++..+..++..+.......+..........+...|+.+.+...+......--      .+.  ......+...+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            445677776666666552111111122222223334566788888888877654311      111  122233345566


Q ss_pred             hcCCHHHHHHHHhccCC----CCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CC--CHHHHHHHHHhhcc
Q 036661          305 KCGDIDSARFLFDGMCD----RTR----VSWTAMISGYAQKGDLDEALRLFFAMEAAGE---VP--DLVTVLSMISGCGQ  371 (615)
Q Consensus       305 ~~~~~~~a~~~~~~~~~----~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~  371 (615)
                      ..|+++.|...++....    .+.    ...+.+...+...|++++|...+++......   .+  ...++..+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            78999999998877522    121    2345566677889999999999988764311   11  12344455667788


Q ss_pred             cchhhHHHHHHHHHHh----cCCC--C-chHHHHHHHHHHHhcCChHHHHHHHhcCCC------C--ChHHHHHHHHHHH
Q 036661          372 SGALELGKWFDNYACS----GGLK--D-NVMVCNALIDMYSKCGSIGDARELFYALPE------K--TVVSWTTMIAGCA  436 (615)
Q Consensus       372 ~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~  436 (615)
                      .|+++.|...+++...    .+..  + ....+..+...+...|++++|...+++...      +  ....+..+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            9999999998887665    2221  1 223345566677788999999988887543      1  1234555667788


Q ss_pred             hcCChHHHHHHHHHHHHcC--CCCCHH--HH--HHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh----hHHHHHHHHH
Q 036661          437 LNGEFVEALDLFHQMMELD--LRPNRV--TF--LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL----NHYSCMADLL  506 (615)
Q Consensus       437 ~~~~~~~a~~~~~~~~~~~--~~p~~~--~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~  506 (615)
                      ..|+++.|...+++.....  ......  ..  ...+..+...|+.+.|...+...... . ....    ..+..++.++
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~  701 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQ  701 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHH
Confidence            8999999999998886521  111111  11  11223445578999999887775531 1 1111    1134677888


Q ss_pred             HhcCChHHHHHHHHhCC-------CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          507 GRKGKLKEALDFVQSMP-------IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       507 ~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      ...|++++|...+++..       ..++ ..+...+..++...|+.++|...+.+++++...
T Consensus       702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            99999999999998875       1111 224556667888999999999999999987754

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=8.2e-07  Score=84.69  Aligned_cols=246  Identities=12%  Similarity=0.035  Sum_probs=158.3

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHH
Q 036661          334 YAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDA  413 (615)
Q Consensus       334 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  413 (615)
                      +.+.|+..+|.-.|+..+... +-+...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-..|
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence            345555666655555555442 2333445555555555555555555555555544 44555556666666666666666


Q ss_pred             HHHHhcCCCCCh-HHHHHHH---------HHHHhcCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 036661          414 RELFYALPEKTV-VSWTTMI---------AGCALNGEFVEALDLFHQM-MELDLRPNRVTFLAVLQACTHAGFLEKGWGY  482 (615)
Q Consensus       414 ~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  482 (615)
                      .+.++.-....+ ..|....         ..+..........++|-++ ...+..+|+.....|.-.|--.|++++|.+.
T Consensus       373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc  452 (579)
T KOG1125|consen  373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC  452 (579)
T ss_pred             HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence            666554322100 0000000         1111112233444455444 4455447777788888888889999999999


Q ss_pred             HHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh-hHHHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661          483 FNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHRNIEIGEYVAYRLFELEP  559 (615)
Q Consensus       483 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  559 (615)
                      |+.+.   .+.|+ ..+|+.|+..++...+.++|+..|++++ .+|... ++..++-+|...|.+++|.+++=.++.+.+
T Consensus       453 f~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~  529 (579)
T KOG1125|consen  453 FEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR  529 (579)
T ss_pred             HHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence            99998   44565 5789999999999999999999999987 777644 777888999999999999999999998776


Q ss_pred             CC----------CCChHhHHHHHHccCChHHHHHH
Q 036661          560 HS----------AAPYVEMANIYALGGRWDGVANL  584 (615)
Q Consensus       560 ~~----------~~~~~~l~~~~~~~g~~~~A~~~  584 (615)
                      .+          -.+|..|-.++.-.++.|-+.++
T Consensus       530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            51          13677777777777777755444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=1.3e-05  Score=69.04  Aligned_cols=250  Identities=12%  Similarity=0.038  Sum_probs=159.1

Q ss_pred             HHHhcCCHHHHHHHHhccC-C-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHH-
Q 036661          302 MYSKCGDIDSARFLFDGMC-D-RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELG-  378 (615)
Q Consensus       302 ~~~~~~~~~~a~~~~~~~~-~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a-  378 (615)
                      -+.-.|.+..++..-.... . .+...-..+.++|...|.+.....   ++... -.|....+..+.......++.+.- 
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~~~~   92 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKKSIL   92 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhHHHH
Confidence            3444566666665554432 1 334444556677777776654332   22222 244445555444444444444333 


Q ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 036661          379 KWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP  458 (615)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p  458 (615)
                      .++.+.+.......+......-...|+..|++++|.+......  +......=+..+.+..+.+-|.+.+++|.+-   -
T Consensus        93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---d  167 (299)
T KOG3081|consen   93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---D  167 (299)
T ss_pred             HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---c
Confidence            3444555554444444444444566888999999999988733  3333333345566777889999999999863   3


Q ss_pred             CHHHHHHHHHHhhc----cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHH
Q 036661          459 NRVTFLAVLQACTH----AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWG  532 (615)
Q Consensus       459 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~  532 (615)
                      +..|.+.|..++.+    .+.+.+|.-+|+++..  ..+|+..+.+..+.++...|++++|..++++..  ...++.++.
T Consensus       168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~  245 (299)
T KOG3081|consen  168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLA  245 (299)
T ss_pred             hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHH
Confidence            45677777766653    4568899999999985  467888888888888889999999999998887  334566666


Q ss_pred             HHHHHHHHhC-ChhHHHHHHHHHhccCCCCC
Q 036661          533 TLLCACKIHR-NIEIGEYVAYRLFELEPHSA  562 (615)
Q Consensus       533 ~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~  562 (615)
                      .++-+....| +.+...+.+.++....|.++
T Consensus       246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  246 NLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            6666555566 44556677778877788753

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.71  E-value=1.6e-07  Score=75.21  Aligned_cols=97  Identities=14%  Similarity=0.025  Sum_probs=86.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ....-.++..+...|++++|.++|+-..  .+-+...|..|+.++...|++++|+..|.++..++|++|..+..++.+|.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            3445567778889999999999999886  44466788999999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHHhcC
Q 036661          574 LGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       574 ~~g~~~~A~~~~~~~~~~~  592 (615)
                      ..|+.+.|++.|+......
T Consensus       115 ~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HcCCHHHHHHHHHHHHHHh
Confidence            9999999999999887755

>PLN02789 farnesyltranstransferase

Probab=98.70  E-value=1.3e-06  Score=81.46  Aligned_cols=188  Identities=10%  Similarity=0.064  Sum_probs=141.0

Q ss_pred             HHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc--hH
Q 036661          404 YSKCGSIGDARELFYALPEK---TVVSWTTMIAGCALNG-EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGF--LE  477 (615)
Q Consensus       404 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~  477 (615)
                      +...++.++|..+..++...   +..+|+.-..++...| ++++++..++++.+.+ +-+..+|+.....+.+.|.  .+
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence            44556778888888876652   4456776666666777 6799999999999873 3344567766656666665  36


Q ss_pred             HHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHh---CC----hhHHH
Q 036661          478 KGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH---RN----IEIGE  548 (615)
Q Consensus       478 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---~~----~~~A~  548 (615)
                      +++.+++++.+  .-+-+..+|.....++.+.|++++|++.++++.  ...+..+|........+.   |.    .++.+
T Consensus       126 ~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el  203 (320)
T PLN02789        126 KELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL  203 (320)
T ss_pred             HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence            78888888884  234457789989999999999999999999987  344566787777666544   22    25788


Q ss_pred             HHHHHHhccCCCCCCChHhHHHHHHc----cCChHHHHHHHHHHHhcCcc
Q 036661          549 YVAYRLFELEPHSAAPYVEMANIYAL----GGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~  594 (615)
                      ....++++.+|+|..+|..++.++..    .++..+|.+...+..+.++.
T Consensus       204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~  253 (320)
T PLN02789        204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN  253 (320)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence            88899999999999999999999988    35567798888887765543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.70  E-value=6e-07  Score=87.89  Aligned_cols=189  Identities=17%  Similarity=0.176  Sum_probs=161.5

Q ss_pred             CCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661          389 GLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ  468 (615)
Q Consensus       389 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  468 (615)
                      +.+|--..-..+...+...|-...|..+++++     ..|.-++.+|...|+..+|..+..+..+.  +|++..|..+++
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD  465 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD  465 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence            44565566677888999999999999999875     45888899999999999999999998884  899999999999


Q ss_pred             HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhH
Q 036661          469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEI  546 (615)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~  546 (615)
                      ......-+++|.++.+.....        .-..++....+.+++.++.+.|+.-.  .+-...+|..+..+..+.++++.
T Consensus       466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence            988888899999998877642        11223344456899999999998865  34467799999999999999999


Q ss_pred             HHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          547 GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       547 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      |.+.|...+.++|++...|+++.-+|.+.|+-.+|...+++..+-+
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999998876

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.69  E-value=1.7e-06  Score=74.58  Aligned_cols=154  Identities=13%  Similarity=0.091  Sum_probs=84.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 036661          398 NALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAG  474 (615)
Q Consensus       398 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  474 (615)
                      ..+-..+...|+-+....+......   .+.......+....+.|++..|+..+++..... ++|...|+.+.-+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence            3344445555555555555544322   233344445666666666666666666666542 445556666666666666


Q ss_pred             chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHH
Q 036661          475 FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAY  552 (615)
Q Consensus       475 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~  552 (615)
                      +.+.|..-|.+..+-.  +-+....+.+.-.|.-.|+++.|..++.... ..+ +..+...+.......|+++.|+.+..
T Consensus       149 r~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         149 RFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             ChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            6666666666665321  1223345555556666666666666666554 222 44455555555566666666666554


Q ss_pred             HH
Q 036661          553 RL  554 (615)
Q Consensus       553 ~~  554 (615)
                      +-
T Consensus       227 ~e  228 (257)
T COG5010         227 QE  228 (257)
T ss_pred             cc
Confidence            43

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.69  E-value=2.3e-06  Score=74.30  Aligned_cols=153  Identities=8%  Similarity=0.084  Sum_probs=115.5

Q ss_pred             HHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHH
Q 036661          401 IDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGW  480 (615)
Q Consensus       401 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  480 (615)
                      +..|...|+++.+....+.+..+.        ..+...++.+++...+++..+.+ +.|...|..+...|...|++++|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            456778888777655543332221        01123567788888888888764 556788999999999999999999


Q ss_pred             HHHHHHHHhhCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661          481 GYFNLMTKVYQVNPELNHYSCMADLL-GRKGK--LKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLF  555 (615)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  555 (615)
                      ..|++..+.  .+.+...+..++.++ ...|+  .++|.+++++.. ..| +...+..++..+...|++++|+..+++++
T Consensus        94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999852  233567788888864 67777  599999999987 444 56688888899999999999999999999


Q ss_pred             ccCCCCCCC
Q 036661          556 ELEPHSAAP  564 (615)
Q Consensus       556 ~~~p~~~~~  564 (615)
                      +.+|.+..-
T Consensus       172 ~l~~~~~~r  180 (198)
T PRK10370        172 DLNSPRVNR  180 (198)
T ss_pred             hhCCCCccH
Confidence            999875543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.66  E-value=2.7e-07  Score=75.47  Aligned_cols=97  Identities=18%  Similarity=0.199  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661          497 NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL  574 (615)
Q Consensus       497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  574 (615)
                      .....++..+...|++++|.+.++++.  .+.+...+..++.++...|++++|...++++++.+|+++..+..++.+|..
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            334455566666666666666666654  223445666666666677777777777777777777777777777777777


Q ss_pred             cCChHHHHHHHHHHHhcCc
Q 036661          575 GGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       575 ~g~~~~A~~~~~~~~~~~~  593 (615)
                      .|++++|.+.+++..+...
T Consensus        98 ~g~~~~A~~~~~~al~~~p  116 (135)
T TIGR02552        98 LGEPESALKALDLAIEICG  116 (135)
T ss_pred             cCCHHHHHHHHHHHHHhcc
Confidence            7777777777776666543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.66  E-value=2.1e-05  Score=74.04  Aligned_cols=150  Identities=18%  Similarity=0.151  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHH
Q 036661          425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV-TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCM  502 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l  502 (615)
                      ...+-.....+...|++++|+..++.++..  .|+.. .+......+.+.++..+|.+.++++..   ..|+ ....-.+
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~  380 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL  380 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence            334444455566788999999999998886  56554 445556688899999999999999884   3566 4455668


Q ss_pred             HHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHH
Q 036661          503 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDG  580 (615)
Q Consensus       503 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  580 (615)
                      +.+|.+.|++++|..+++...  .+.++..|..|..+|...|+..++...                 .+..|.-.|+|++
T Consensus       381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~  443 (484)
T COG4783         381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQ  443 (484)
T ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHH
Confidence            889999999999999998876  445677889999999999888776644                 4567778888888


Q ss_pred             HHHHHHHHHhcCcccC
Q 036661          581 VANLRTMMKRNQVKKF  596 (615)
Q Consensus       581 A~~~~~~~~~~~~~~~  596 (615)
                      |+..+....++.-.-+
T Consensus       444 A~~~l~~A~~~~~~~~  459 (484)
T COG4783         444 AIIFLMRASQQVKLGF  459 (484)
T ss_pred             HHHHHHHHHHhccCCc
Confidence            8888888877664333

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.65  E-value=4e-06  Score=71.60  Aligned_cols=169  Identities=13%  Similarity=0.123  Sum_probs=118.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCC--CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 036661          397 CNALIDMYSKCGSIGDARELFYALPE--KTV-VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA  473 (615)
Q Consensus       397 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  473 (615)
                      |..++-+....|+.+.|...++.+..  |+. ..-..-..-+-..|++++|+++++.+.+.+ +.|..++..-+...-.+
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~  133 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ  133 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence            34444455556666666666665544  221 111111122334688899999999998875 44556776666666777


Q ss_pred             CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHh---CChhHHH
Q 036661          474 GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIH---RNIEIGE  548 (615)
Q Consensus       474 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---~~~~~A~  548 (615)
                      |+.-+|++-+....+  .+..|...|..+.+.|...|++++|.-.++++. .+| ++..+..+...+.-.   .+.+-|.
T Consensus       134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar  211 (289)
T KOG3060|consen  134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR  211 (289)
T ss_pred             CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            888888888888886  567888999999999999999999999999987 555 444556666655443   3788899


Q ss_pred             HHHHHHhccCCCCCCChHhH
Q 036661          549 YVAYRLFELEPHSAAPYVEM  568 (615)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~l  568 (615)
                      ++|.++++++|.+...++.+
T Consensus       212 kyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  212 KYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HHHHHHHHhChHhHHHHHHH
Confidence            99999999999766555543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=2.7e-06  Score=72.57  Aligned_cols=167  Identities=12%  Similarity=0.112  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661          426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV-TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD  504 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  504 (615)
                      ..|..++-+....|+.+.|...++++... + |.+. ....-..-+...|.+++|.++++.+..+  -+.+..++..-+.
T Consensus        53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlA  128 (289)
T KOG3060|consen   53 TLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLA  128 (289)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHH
Confidence            35666777778889999999999999987 3 5543 3332233456788999999999999964  2445566777777


Q ss_pred             HHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC---ChH
Q 036661          505 LLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG---RWD  579 (615)
Q Consensus       505 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~  579 (615)
                      +.-..|+.-+|++-+.+..  +..|...|..+...|...|++++|.=-+++++-++|.++-.+..+++++.-.|   ++.
T Consensus       129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~  208 (289)
T KOG3060|consen  129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE  208 (289)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence            7778899889998888876  67789999999999999999999999999999999999999999999988766   578


Q ss_pred             HHHHHHHHHHhcCcccC
Q 036661          580 GVANLRTMMKRNQVKKF  596 (615)
Q Consensus       580 ~A~~~~~~~~~~~~~~~  596 (615)
                      -|+++|.+.++......
T Consensus       209 ~arkyy~~alkl~~~~~  225 (289)
T KOG3060|consen  209 LARKYYERALKLNPKNL  225 (289)
T ss_pred             HHHHHHHHHHHhChHhH
Confidence            89999999988776433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.60  E-value=5.5e-06  Score=77.80  Aligned_cols=124  Identities=14%  Similarity=0.032  Sum_probs=106.0

Q ss_pred             HHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCCh
Q 036661          467 LQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNI  544 (615)
Q Consensus       467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~  544 (615)
                      .-.+...|++++|+..++.+.+.  .+-+...+....+.+.+.++.++|.+.++++. ..|+ ...+..+..++.+.|+.
T Consensus       313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~  390 (484)
T COG4783         313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP  390 (484)
T ss_pred             HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence            33456679999999999999863  33445555667799999999999999999997 6666 56778889999999999


Q ss_pred             hHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          545 EIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       545 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      .+|+..++.....+|++|..|..|+.+|...|+..+|...+-+.....
T Consensus       391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~  438 (484)
T COG4783         391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALA  438 (484)
T ss_pred             HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999887765533

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.59  E-value=2.5e-06  Score=77.46  Aligned_cols=184  Identities=13%  Similarity=-0.028  Sum_probs=128.5

Q ss_pred             CCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCC-C-chHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChH---H
Q 036661          356 VPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLK-D-NVMVCNALIDMYSKCGSIGDARELFYALPE--K-TVV---S  427 (615)
Q Consensus       356 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~  427 (615)
                      ......+..+...+...|+++.|...++.+...... | ....+..+..++.+.|+++.|...++++.+  | +..   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            345567778888899999999999999998875421 1 224677788999999999999999998865  2 222   4


Q ss_pred             HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhH
Q 036661          428 WTTMIAGCALN--------GEFVEALDLFHQMMELDLRPNRV-TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNH  498 (615)
Q Consensus       428 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  498 (615)
                      +..+..++...        |++++|.+.++++...  .|+.. ....+.....    ..      ....         ..
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~~---------~~  168 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRLA---------GK  168 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHHH---------HH
Confidence            66666666654        7889999999999986  45542 2222211100    00      0000         01


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCC-CCC----ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          499 YSCMADLLGRKGKLKEALDFVQSMP-IKS----DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       499 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      ...++..+.+.|++++|...+++.. ..|    ....+..++.++.+.|++++|...++.+....|+
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            1246677888999999999888875 222    2457788888899999999999988887766553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.56  E-value=1.9e-05  Score=82.28  Aligned_cols=233  Identities=9%  Similarity=0.079  Sum_probs=131.7

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhccC--CC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 036661          292 DVSVINTLISMYSKCGDIDSARFLFDGMC--DR-TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISG  368 (615)
Q Consensus       292 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  368 (615)
                      +...+..|+..+...+++++|..+.+...  .| ....|-.+...+.+.++.+++..+                 .++..
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~   92 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLIDS   92 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence            44556677777777777777777776542  22 233344444455555554444333                 22233


Q ss_pred             hcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHH
Q 036661          369 CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEAL  445 (615)
Q Consensus       369 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~  445 (615)
                      .....++..+..+...+.+.  ..+...+..+..+|-+.|+.++|..+++++.+   .|+.+.|.+...|... +.++|.
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~  169 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI  169 (906)
T ss_pred             cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence            33333343333344444332  23334566667777777777777777776655   3556667777777666 777777


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 036661          446 DLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIK  525 (615)
Q Consensus       446 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  525 (615)
                      +++.+.+..               +...+++..+.++|.++..  ..+.+...+..+.+.....-..            .
T Consensus       170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~------------~  220 (906)
T PRK14720        170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREF------------T  220 (906)
T ss_pred             HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhcc------------c
Confidence            776666653               4444566666666666663  2222222332222222211001            1


Q ss_pred             CChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          526 SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       526 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      --..++.-+...|...++++++..+++.+++.+|.|..+...++..|.
T Consensus       221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            112344445566667778888888888888888888888888877776

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.53  E-value=1.2e-06  Score=83.20  Aligned_cols=124  Identities=12%  Similarity=0.117  Sum_probs=101.9

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHH
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCAC  538 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~  538 (615)
                      .....|+..+...++++.|..+++++.+.   .|+.  ...+++.+...++..+|.+++.+.. ..| +...+...+..+
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34556666777788889999999988854   3553  4457788888888888988888876 344 555666677788


Q ss_pred             HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661          539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                      ...++++.|+++.+++.++.|++-.+|..|+.+|...|++++|+..++.+.
T Consensus       245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            899999999999999999999999999999999999999999999998775

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.53  E-value=1.9e-05  Score=83.16  Aligned_cols=227  Identities=11%  Similarity=0.106  Sum_probs=163.7

Q ss_pred             CHHHHHHHHHhhcccchhhHHHHHHHHHHh-cCCCC---chHHHHHHHHHHHhcCChHHHHHHHhcCCC-CC-hHHHHHH
Q 036661          358 DLVTVLSMISGCGQSGALELGKWFDNYACS-GGLKD---NVMVCNALIDMYSKCGSIGDARELFYALPE-KT-VVSWTTM  431 (615)
Q Consensus       358 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~l  431 (615)
                      ....|...|......++.+.|.++.+++.. -++.-   -..+|.++++.-..-|.-+...++|+++.+ -| ...|..|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence            345566677777788888888888887765 22211   124566677776777777888888888776 23 4578888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHh
Q 036661          432 IAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGR  508 (615)
Q Consensus       432 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~  508 (615)
                      ...|.+.+.+++|.++++.|.+. +.-....|...+..+.++++.+.|..++.++.+.   -|.   .......+.+-.+
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhh
Confidence            88899999999999999999886 3455578888888888988889999999988853   233   3455666777778


Q ss_pred             cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccC--CCCCCChHhHHHHHH-ccCChHHHHH
Q 036661          509 KGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELE--PHSAAPYVEMANIYA-LGGRWDGVAN  583 (615)
Q Consensus       509 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~-~~g~~~~A~~  583 (615)
                      .|+.+.+..+|+...  .+.....|..++..-.++|+.+.++.+|++++.+.  |..+..++..---|. ..|+-+.+..
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence            899999999998887  33356789999999999999999999999998754  555554444433333 4466555544


Q ss_pred             HHHHH
Q 036661          584 LRTMM  588 (615)
Q Consensus       584 ~~~~~  588 (615)
                      +-.++
T Consensus      1693 VKarA 1697 (1710)
T KOG1070|consen 1693 VKARA 1697 (1710)
T ss_pred             HHHHH
Confidence            44433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.49  E-value=1.9e-05  Score=81.50  Aligned_cols=137  Identities=10%  Similarity=0.025  Sum_probs=105.2

Q ss_pred             ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHH
Q 036661          424 TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSC  501 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~  501 (615)
                      ++..+..|.....+.|.+++|..+++...+.  .|+. .....+..++.+.+++++|+..+++...   ..|+ ......
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~  159 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREILL  159 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHHH
Confidence            4667777888888888888888888888885  6665 4667777788888888888888888874   2444 456667


Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661          502 MADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPY  565 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  565 (615)
                      ++.++...|++++|.++|+++. ..|+ ...+..+..++...|+.++|...|+++++...+....|
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~  225 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL  225 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence            7788888888888888888887 4444 56778888888888888888888888888765544443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.46  E-value=3.8e-06  Score=68.65  Aligned_cols=115  Identities=10%  Similarity=-0.002  Sum_probs=89.0

Q ss_pred             HHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 036661          447 LFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--  523 (615)
Q Consensus       447 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--  523 (615)
                      .++++...  .|+. .....+...+...|++++|...++.+...  .+.+...+..++.++...|++++|...+++..  
T Consensus         5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552         5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45555554  4543 45666777888889999999999888753  24456778888899999999999999998875  


Q ss_pred             CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661          524 IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPY  565 (615)
Q Consensus       524 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  565 (615)
                      .+.+...+..+..++...|++++|...++++++.+|++....
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            344566777888889999999999999999999999876543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.46  E-value=0.0017  Score=62.28  Aligned_cols=173  Identities=12%  Similarity=0.040  Sum_probs=120.9

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHh
Q 036661          340 LDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKD-NVMVCNALIDMYSKCGSIGDARELFY  418 (615)
Q Consensus       340 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~  418 (615)
                      .+.....++++...-..--..+|...+....+..-+..|..+|..+.+.+..+ .+.+.++++..|+ .++.+-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            45566666666543322223456677777777888889999999998877666 7788888888776 467888999998


Q ss_pred             cCCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhhC--
Q 036661          419 ALPE--K-TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR--VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ--  491 (615)
Q Consensus       419 ~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--  491 (615)
                      --..  + ++.--...+.-+...|+-..+..+|++....++.|+.  ..|..++.--..-|+...+.++-++....+.  
T Consensus       426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~  505 (656)
T KOG1914|consen  426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD  505 (656)
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence            6544  3 3444456677777888889999999999988777765  5899999988889999999988888775443  


Q ss_pred             CCCChhHHHHHHHHHHhcCChH
Q 036661          492 VNPELNHYSCMADLLGRKGKLK  513 (615)
Q Consensus       492 ~~~~~~~~~~l~~~~~~~g~~~  513 (615)
                      ..+....-..+++.|.-.+.+.
T Consensus       506 qe~~~~~~~~~v~RY~~~d~~~  527 (656)
T KOG1914|consen  506 QEYEGNETALFVDRYGILDLYP  527 (656)
T ss_pred             hcCCCChHHHHHHHHhhccccc
Confidence            2222223333455555444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.45  E-value=4.2e-06  Score=69.00  Aligned_cols=115  Identities=16%  Similarity=0.033  Sum_probs=62.2

Q ss_pred             cCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCh----hhHHHHHHHHHHhCChhH
Q 036661          473 AGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA----GIWGTLLCACKIHRNIEI  546 (615)
Q Consensus       473 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~  546 (615)
                      .++...+...++.+.+.++-.|- ......++..+...|++++|...|+.+. ..|+.    .....+...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            45555555556666543211110 1223334455566666666666666655 22332    133344555666666666


Q ss_pred             HHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661          547 GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       547 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                      |+..++.. .-.+-.+..+..+|++|.+.|++++|++.|++.
T Consensus       104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            66666552 223334556666777777777777777777653

>PF12854 PPR_1: PPR repeat

Probab=98.43  E-value=3.1e-07  Score=53.08  Aligned_cols=32  Identities=31%  Similarity=0.471  Sum_probs=21.3

Q ss_pred             cCCCccchHHHHHHHHHccCCHHHHHHHHHhc
Q 036661          185 GVDADVSVCNTWISAYAKCNDLKMAELVFRGI  216 (615)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  216 (615)
                      |+.||..+|++++++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            55666666666666666666666666666665

>PF12854 PPR_1: PPR repeat

Probab=98.35  E-value=8.2e-07  Score=51.32  Aligned_cols=32  Identities=41%  Similarity=0.663  Sum_probs=21.5

Q ss_pred             CCCCchHHHHHHHHHHHhcCChHHHHHHHhcC
Q 036661          389 GLKDNVMVCNALIDMYSKCGSIGDARELFYAL  420 (615)
Q Consensus       389 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  420 (615)
                      |+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            55666666666666666666666666666665

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.35  E-value=0.005  Score=62.90  Aligned_cols=158  Identities=17%  Similarity=0.117  Sum_probs=89.3

Q ss_pred             HHHHHHhhcccchhh---HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChH--HHH-HHHHHH
Q 036661          362 VLSMISGCGQSGALE---LGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV--SWT-TMIAGC  435 (615)
Q Consensus       362 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~-~l~~~~  435 (615)
                      .+.++..+.+.++..   +|.-+++...... +.+..+--.+++.|.-.|-+..|.++|+.+.-.++.  |.. .+...+
T Consensus       439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~  517 (932)
T KOG2053|consen  439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRA  517 (932)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHH
Confidence            456677787777665   3344444443333 455666677889999999999999999987654432  121 233444


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHH---HHHHHHHHhhCCCCChhHHHHHHHHHHhcCC
Q 036661          436 ALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGW---GYFNLMTKVYQVNPELNHYSCMADLLGRKGK  511 (615)
Q Consensus       436 ~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  511 (615)
                      ...|++..+...++..... +..+. .+-..+..+|. .|.+.+..   ..=+++..+ .-.....+-+..+..+...++
T Consensus       518 ~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr-~g~ySkI~em~~fr~rL~~S-~q~~a~~VE~~~l~ll~~~~~  594 (932)
T KOG2053|consen  518 ETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYR-RGAYSKIPEMLAFRDRLMHS-LQKWACRVENLQLSLLCNADR  594 (932)
T ss_pred             HhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHH-cCchhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCc
Confidence            5567777777777665543 11111 23333333443 34444333   333333321 111122344556677778888


Q ss_pred             hHHHHHHHHhCC
Q 036661          512 LKEALDFVQSMP  523 (615)
Q Consensus       512 ~~~A~~~~~~~~  523 (615)
                      .+.=...+..+.
T Consensus       595 ~~q~~~~~~~~~  606 (932)
T KOG2053|consen  595 GTQLLKLLESMK  606 (932)
T ss_pred             HHHHHHHHhccc
Confidence            888777777765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.33  E-value=4.3e-06  Score=66.64  Aligned_cols=95  Identities=12%  Similarity=-0.002  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC---CCChHhHHH
Q 036661          499 YSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS---AAPYVEMAN  570 (615)
Q Consensus       499 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~  570 (615)
                      +..++..+.+.|++++|.+.++++. ..|+    ...+..++.++.+.|++++|...+++++...|++   +.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            4445555666666666666666554 2222    2344456666666677777777777777666664   345666677


Q ss_pred             HHHccCChHHHHHHHHHHHhcCc
Q 036661          571 IYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       571 ~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ++...|++++|.+.++++.+..+
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHCc
Confidence            77777777777777777666554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.32  E-value=8e-07  Score=62.50  Aligned_cols=66  Identities=17%  Similarity=0.156  Sum_probs=60.1

Q ss_pred             ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC-ChHHHHHHHHHHHhcC
Q 036661          527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG-RWDGVANLRTMMKRNQ  592 (615)
Q Consensus       527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~  592 (615)
                      +...|..++..+...|++++|+..|+++++++|+++.+|..++.+|...| ++++|++.+++..+..
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            35678888999999999999999999999999999999999999999999 7999999999887643

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.32  E-value=9.6e-07  Score=61.16  Aligned_cols=60  Identities=12%  Similarity=0.086  Sum_probs=53.2

Q ss_pred             HHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          534 LLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ++..+...|++++|+..++++++.+|+++.++..++.++...|++++|+.+++++.+..+
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            566788899999999999999999999999999999999999999999999999887654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.32  E-value=3.7e-06  Score=63.92  Aligned_cols=94  Identities=17%  Similarity=0.204  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC
Q 036661          499 YSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG  576 (615)
Q Consensus       499 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  576 (615)
                      +..++..+...|++++|...++++. ..| +...+..++..+...|++++|...++++++..|.++..+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            4556777888888888888888875 333 34567777888888899999999999999999998888999999999999


Q ss_pred             ChHHHHHHHHHHHhcC
Q 036661          577 RWDGVANLRTMMKRNQ  592 (615)
Q Consensus       577 ~~~~A~~~~~~~~~~~  592 (615)
                      ++++|.+.+++..+..
T Consensus        83 ~~~~a~~~~~~~~~~~   98 (100)
T cd00189          83 KYEEALEAYEKALELD   98 (100)
T ss_pred             hHHHHHHHHHHHHccC
Confidence            9999999998876544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.32  E-value=0.00026  Score=74.12  Aligned_cols=170  Identities=8%  Similarity=0.073  Sum_probs=94.8

Q ss_pred             CCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHH
Q 036661          221 RTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLI  300 (615)
Q Consensus       221 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  300 (615)
                      .+...|..|+..+...+++++|.++.+...+.  .|+...+                                  |-.+.
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~----------------------------------yy~~G   72 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISA----------------------------------LYISG   72 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceeh----------------------------------HHHHH
Confidence            35667778888888888888888888765553  2443322                                  22222


Q ss_pred             HHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHH
Q 036661          301 SMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKW  380 (615)
Q Consensus       301 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  380 (615)
                      ..+...++.+++..+             .++.......++.-+.-+...|.+.  .-+...+..+..+|.+.|+.+++..
T Consensus        73 ~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~  137 (906)
T PRK14720         73 ILSLSRRPLNDSNLL-------------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKG  137 (906)
T ss_pred             HHHHhhcchhhhhhh-------------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHH
Confidence            233344443332222             2233333333343333333333332  2233355566666666677777777


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036661          381 FDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL  454 (615)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  454 (615)
                      +++++.+.. +.++.+.|.+...|... ++++|.+++.+.           +..+...+++..+.++|.++...
T Consensus       138 ~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        138 VWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             HHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc
Confidence            777766666 55666677777777766 777777665432           33355556666666666666664

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.31  E-value=4.9e-05  Score=62.64  Aligned_cols=125  Identities=15%  Similarity=0.094  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh--hHHHHH
Q 036661          428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNR---VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL--NHYSCM  502 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l  502 (615)
                      |..++..+ ..++...+...++.+.+.. +.+.   .....+...+...|++++|...|+.+... ...|+.  .....+
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence            44455554 4788888888888888863 2331   23444567788889999999999998864 222221  244457


Q ss_pred             HHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661          503 ADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLF  555 (615)
Q Consensus       503 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  555 (615)
                      +.++...|++++|+..++... ....+..+...+..+...|+.++|+..|++++
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            888889999999999998865 23344566777888999999999999998864

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.27  E-value=0.002  Score=59.13  Aligned_cols=291  Identities=19%  Similarity=0.171  Sum_probs=192.2

Q ss_pred             HHHHHHHHHh--cCCHHHHHHHHhcc---CCCCcccHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 036661          296 INTLISMYSK--CGDIDSARFLFDGM---CDRTRVSWTAMISGYA--QKGDLDEALRLFFAMEAAGEVPDL--VTVLSMI  366 (615)
Q Consensus       296 ~~~l~~~~~~--~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll  366 (615)
                      |..|-.++..  .|+-..|.+.-.+.   ...|......++.+-.  -.|++++|.+-|+.|...   |..  .-...|.
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy  161 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY  161 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence            4445444433  46666666665543   3445555555555443  478999999999988753   222  2233444


Q ss_pred             HhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChH--HHHHHHHHHH---
Q 036661          367 SGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KTVV--SWTTMIAGCA---  436 (615)
Q Consensus       367 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~--~~~~l~~~~~---  436 (615)
                      -.-.+.|+.+.|..+-+..-..- +.-.......+...+..|+++.|+++++.-..     ++..  .-..|+.+-.   
T Consensus       162 leAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~  240 (531)
T COG3898         162 LEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL  240 (531)
T ss_pred             HHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence            44556788888888777665543 33445677888899999999999999986443     3432  2222332211   


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 036661          437 LNGEFVEALDLFHQMMELDLRPNRV-TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEA  515 (615)
Q Consensus       437 ~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  515 (615)
                      -..+...|...-.+..+  +.|+.. .-.....++.+.|+..++-.+++.+-+.   .|-+.++.  ...+.+.|+  .+
T Consensus       241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~--lY~~ar~gd--ta  311 (531)
T COG3898         241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIAL--LYVRARSGD--TA  311 (531)
T ss_pred             hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHH--HHHHhcCCC--cH
Confidence            23456777777666666  477764 4555677899999999999999998853   45554442  223345554  44


Q ss_pred             HHHHHhCC----CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc-CChHHHHHHHHHHH
Q 036661          516 LDFVQSMP----IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG-GRWDGVANLRTMMK  589 (615)
Q Consensus       516 ~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~  589 (615)
                      ..-+++..    .+| +.........+....|++..|..-.+.+.+..|. ..+|..|+++-... |+..+++..+-+..
T Consensus       312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav  390 (531)
T COG3898         312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAV  390 (531)
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence            44444432    334 4556677778888899999999999999999998 67888999988766 99999999998777


Q ss_pred             hcCcccCCceeEE
Q 036661          590 RNQVKKFPGQSLV  602 (615)
Q Consensus       590 ~~~~~~~~~~~~~  602 (615)
                      ...  .+|.++-.
T Consensus       391 ~AP--rdPaW~ad  401 (531)
T COG3898         391 KAP--RDPAWTAD  401 (531)
T ss_pred             cCC--CCCccccc
Confidence            654  44554433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.25  E-value=3.9e-07  Score=66.94  Aligned_cols=77  Identities=10%  Similarity=0.149  Sum_probs=41.7

Q ss_pred             CChHHHHHHHHhCC-CCC---ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHH
Q 036661          510 GKLKEALDFVQSMP-IKS---DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLR  585 (615)
Q Consensus       510 g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  585 (615)
                      |++++|+.+++++. ..|   +...+..++.++.+.|++++|..++++ .+.+|.++.....+|.+|...|++++|++++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            44455555555443 112   233444455556666666666666666 5555555555556666666666666666666


Q ss_pred             HH
Q 036661          586 TM  587 (615)
Q Consensus       586 ~~  587 (615)
                      ++
T Consensus        82 ~~   83 (84)
T PF12895_consen   82 EK   83 (84)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.23  E-value=2.9e-06  Score=81.35  Aligned_cols=109  Identities=9%  Similarity=-0.045  Sum_probs=88.2

Q ss_pred             HHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhC
Q 036661          465 AVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHR  542 (615)
Q Consensus       465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~  542 (615)
                      .....+...|++++|++.|+++.+.  .+.+...|..++.+|.+.|++++|+..++++. ..| +...+..++.+|...|
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            3455677789999999999999853  23345678888899999999999999999987 444 5667888888999999


Q ss_pred             ChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661          543 NIEIGEYVAYRLFELEPHSAAPYVEMANIYALG  575 (615)
Q Consensus       543 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  575 (615)
                      ++++|+..++++++++|+++.....+..+..+.
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999888777776665444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.23  E-value=4.6e-05  Score=72.67  Aligned_cols=125  Identities=17%  Similarity=0.157  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 036661          395 MVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAG  474 (615)
Q Consensus       395 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  474 (615)
                      .....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++..+.. +-+...+..-...+.+.+
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence            3445667777788899999999999998777777788899988899999999999998762 335566666677888999


Q ss_pred             chHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661          475 FLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       475 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      +++.|+++.+++..   ..|+ ..+|..|+.+|...|++++|+-.++.++
T Consensus       249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            99999999999984   4565 5689999999999999999999999987

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.22  E-value=0.00024  Score=61.51  Aligned_cols=246  Identities=11%  Similarity=0.068  Sum_probs=157.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 036661          331 ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSI  410 (615)
Q Consensus       331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  410 (615)
                      ++-+.-.|.+..++..-......  +.+...-.-+-++|...|+.....   ..+.... .|.......+......-++.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence            45566677777777655544332  133333334445555555543322   1222222 33333444444433334443


Q ss_pred             HHH-HHHHhcCCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHH
Q 036661          411 GDA-RELFYALPEK----TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNL  485 (615)
Q Consensus       411 ~~A-~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  485 (615)
                      +.- .++.+.+..+    +......-...|+..+++++|++..+....    .+  ....=...+.+..+.+-|.+.+++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~----lE--~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGEN----LE--AAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccch----HH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332 2333333332    223333345668899999999998877321    22  222224456677889999999999


Q ss_pred             HHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661          486 MTKVYQVNPELNHYSCMADLLGR----KGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEP  559 (615)
Q Consensus       486 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  559 (615)
                      |..   + -+-.+.+.|+.++.+    .++..+|.-+|+++.  ..|...+.+..+.++...|++++|+.+++.++..+|
T Consensus       163 mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  163 MQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             HHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            984   2 334566666666654    467899999999997  678888899999999999999999999999999999


Q ss_pred             CCCCChHhHHHHHHccCChHHHH-HHHHHHHhcC
Q 036661          560 HSAAPYVEMANIYALGGRWDGVA-NLRTMMKRNQ  592 (615)
Q Consensus       560 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~  592 (615)
                      ++|.++.++.-+-...|+-+++. +.+.++....
T Consensus       239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~  272 (299)
T KOG3081|consen  239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSH  272 (299)
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence            99999999998888889876654 4555555443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.22  E-value=3.3e-06  Score=74.26  Aligned_cols=110  Identities=13%  Similarity=0.065  Sum_probs=90.2

Q ss_pred             HHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCC
Q 036661          467 LQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRN  543 (615)
Q Consensus       467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~  543 (615)
                      ..-+.+.+++.+|+..|.+++   .+.|+ ...|..-+.+|.+.|.++.|++-.+... ..|. ..+|..|..+|...|+
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK  164 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence            556677899999999999998   45555 4455667889999999999999998887 5554 4589999999999999


Q ss_pred             hhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChH
Q 036661          544 IEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWD  579 (615)
Q Consensus       544 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  579 (615)
                      +++|++.|+++++++|++......|-.+-...+..+
T Consensus       165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999877777766666666555

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=2.5e-05  Score=69.43  Aligned_cols=108  Identities=13%  Similarity=0.050  Sum_probs=87.4

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHh---CChhHHHHHHHHHhccCCCCCCChHh
Q 036661          493 NPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH---RNIEIGEYVAYRLFELEPHSAAPYVE  567 (615)
Q Consensus       493 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~  567 (615)
                      +-|...|..|+.+|...|+...|..-|.+..  ..+++..+..+..++..+   ....++..++++++..+|.+..+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            4456788888888888888888888888775  444566666666665432   25678999999999999999999999


Q ss_pred             HHHHHHccCChHHHHHHHHHHHhcCcccCCcee
Q 036661          568 MANIYALGGRWDGVANLRTMMKRNQVKKFPGQS  600 (615)
Q Consensus       568 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  600 (615)
                      |+..+...|++.+|...|+.|++.....+|..+
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~  265 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS  265 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence            999999999999999999999998887777544

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.19  E-value=0.0071  Score=58.20  Aligned_cols=211  Identities=14%  Similarity=0.113  Sum_probs=139.4

Q ss_pred             hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC---ChHHHHHHHhcCCC----CChHHHHHHHHHHHhcCChHHHHHH
Q 036661          375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG---SIGDARELFYALPE----KTVVSWTTMIAGCALNGEFVEALDL  447 (615)
Q Consensus       375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~  447 (615)
                      .+++..+++..+..-...+..+|..+.+---..-   ..+.....++++..    .-..+|-.++..-.+..-...|..+
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i  388 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI  388 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence            3455566665554333334444444433221111   24444555554443    2234677788888888889999999


Q ss_pred             HHHHHHcCCCC-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---
Q 036661          448 FHQMMELDLRP-NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP---  523 (615)
Q Consensus       448 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---  523 (615)
                      |.+..+.+..+ .....+.++.-++ +++..-|.++|+.=.+.+|-.|  .--...++.+...++-..|..+|++..   
T Consensus       389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~  465 (656)
T KOG1914|consen  389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSV  465 (656)
T ss_pred             HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence            99999988777 5567777777666 4788999999998877554333  344567788889999999999999987   


Q ss_pred             CCCC--hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC----CChHhHHHHHHccCChHHHHHHHHHH
Q 036661          524 IKSD--AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA----APYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       524 ~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                      ..|+  ...|..++.--..-|+...+.++-++.....|.+-    ..-....+-|.-.+.+.--..-++.+
T Consensus       466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l  536 (656)
T KOG1914|consen  466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL  536 (656)
T ss_pred             CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence            2333  35888888888889999999999888877666321    22334556677677665544444433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.19  E-value=1.1e-05  Score=71.19  Aligned_cols=97  Identities=20%  Similarity=0.255  Sum_probs=80.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCC
Q 036661          433 AGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGK  511 (615)
Q Consensus       433 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  511 (615)
                      .-+++.++|.+|+..|.+.++.. +-|.+-|..-..+|.+.|.++.|++-.+..+   .+.|. ...|..|..+|...|+
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK  164 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence            44678899999999999999962 3455677777889999999999998888877   44555 5789999999999999


Q ss_pred             hHHHHHHHHhCC-CCCChhhHHH
Q 036661          512 LKEALDFVQSMP-IKSDAGIWGT  533 (615)
Q Consensus       512 ~~~A~~~~~~~~-~~p~~~~~~~  533 (615)
                      +++|.+.|++.. ..|+..+|..
T Consensus       165 ~~~A~~aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  165 YEEAIEAYKKALELDPDNESYKS  187 (304)
T ss_pred             HHHHHHHHHhhhccCCCcHHHHH
Confidence            999999999988 7887665543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=4.1e-05  Score=70.30  Aligned_cols=164  Identities=11%  Similarity=0.068  Sum_probs=108.8

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh-------------HH
Q 036661          433 AGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN-------------HY  499 (615)
Q Consensus       433 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~  499 (615)
                      .++.-.|++++|...--...+.+ ..+......-..++-..++.+.+...|++..   ...|+-.             .+
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~  252 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVK  252 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHH
Confidence            34556788888887776666542 2222222222334555677888888888776   3445432             12


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhCC-CCCC-----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          500 SCMADLLGRKGKLKEALDFVQSMP-IKSD-----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       500 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ..=+.-..+.|++.+|.+.+.+.. ..|+     ...|........+.|+..+|+.--+.+++++|.-...|...++++.
T Consensus       253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l  332 (486)
T KOG0550|consen  253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL  332 (486)
T ss_pred             HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence            222333457788888888888876 4443     3445555566677888888888888888888888888888888888


Q ss_pred             ccCChHHHHHHHHHHHhcCcccCCcee
Q 036661          574 LGGRWDGVANLRTMMKRNQVKKFPGQS  600 (615)
Q Consensus       574 ~~g~~~~A~~~~~~~~~~~~~~~~~~~  600 (615)
                      ..++|++|.+.+++..+......+..+
T Consensus       333 ~le~~e~AV~d~~~a~q~~~s~e~r~~  359 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKAMQLEKDCEIRRT  359 (486)
T ss_pred             HHHHHHHHHHHHHHHHhhccccchHHH
Confidence            888888888888888765544444333

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.17  E-value=0.012  Score=60.17  Aligned_cols=520  Identities=12%  Similarity=0.035  Sum_probs=252.4

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH--HhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhH
Q 036661           30 VDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKAC--AKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDC  107 (615)
Q Consensus        30 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  107 (615)
                      ...+++.+|+....++.+..  |+. .|..++.++  .+.|+.++|..+++.....+. .|..+...+-.+|.+.++.++
T Consensus        20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence            45677888888888877643  332 345555554  577888888888777766653 377788888888888888888


Q ss_pred             HHHhhccCCC--CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcC-C---------hhHHH
Q 036661          108 AYKLFDKMPD--RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAK-H---------LSLLK  175 (615)
Q Consensus       108 a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~---------~~~a~  175 (615)
                      |..++++...  |+..-...+.-+|.+.+.+.+-.+.--+|-+. .+-+...|=++++...+.. .         ...|.
T Consensus        96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053|consen   96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence            8888888775  44334444455666666654433332222221 2223333333444333221 1         12233


Q ss_pred             HHHHHHHHhc-CCCccchHHHHHHHHHccCCHHHHHHHHH-hcccCCC--CcchHHHHHHHHhcCCChhhHHHHHHHHHH
Q 036661          176 SVHSFGIHIG-VDADVSVCNTWISAYAKCNDLKMAELVFR-GIEEGLR--TVVSWNSIIGGCTYGDKFDDSLNFYRHMIY  251 (615)
Q Consensus       176 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  251 (615)
                      +..+.+.+.+ ...+..-.......+...|++++|..++. ...+..+  +...-+.-+..+...+++.+..++-.++..
T Consensus       175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            4444444433 11111112222344456778888888883 2322222  223333455667777888888888888887


Q ss_pred             CCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcccHHHH
Q 036661          252 DGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDR-TRVSWTAM  330 (615)
Q Consensus       252 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l  330 (615)
                      .|  +|.  |...+..            +++ +.+....++...-      +...+..+...+..++.... ...+|-+-
T Consensus       255 k~--~Dd--y~~~~~s------------v~k-lLe~~~~~~a~~~------~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~  311 (932)
T KOG2053|consen  255 KG--NDD--YKIYTDS------------VFK-LLELLNKEPAEAA------HSLSKSLDECIEKAQKNIGSKSRGPYLAR  311 (932)
T ss_pred             hC--Ccc--hHHHHHH------------HHH-HHHhcccccchhh------hhhhhhHHHHHHHHHHhhcccccCcHHHH
Confidence            76  343  2222211            111 1111111111111      11122233333333222211 22334444


Q ss_pred             HHHHHh---cCChhHHHHHHHHHHHCCCCC-------------CHHHHHHHHHhhcccc-hhhHHHHHHHHHH-------
Q 036661          331 ISGYAQ---KGDLDEALRLFFAMEAAGEVP-------------DLVTVLSMISGCGQSG-ALELGKWFDNYAC-------  386 (615)
Q Consensus       331 l~~~~~---~~~~~~a~~~~~~~~~~~~~~-------------~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~-------  386 (615)
                      +..+.+   -|+.+++...|-+-  -|..|             +......++..+.... +.....+.+..-.       
T Consensus       312 lel~kr~~~~gd~ee~~~~y~~k--fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~r  389 (932)
T KOG2053|consen  312 LELDKRYKLIGDSEEMLSYYFKK--FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLR  389 (932)
T ss_pred             HHHHHHhcccCChHHHHHHHHHH--hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHH
Confidence            444433   35555544433221  11111             1111122232222211 1111111111100       


Q ss_pred             hcC--CCCchHHHHHH----HHHHHhcCChHHHHHHHhcCCC----C-Ch---HHHHHHHHHHHhcCChH---HHHHHHH
Q 036661          387 SGG--LKDNVMVCNAL----IDMYSKCGSIGDARELFYALPE----K-TV---VSWTTMIAGCALNGEFV---EALDLFH  449 (615)
Q Consensus       387 ~~~--~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~----~-~~---~~~~~l~~~~~~~~~~~---~a~~~~~  449 (615)
                      -.|  ...+.....++    +..|.+.      .++=+.+..    + +.   -+.+.|+..+.+.++..   +|+-+++
T Consensus       390 l~G~~~~l~ad~i~a~~~kl~~~ye~g------ls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE  463 (932)
T KOG2053|consen  390 LLGLYEKLPADSILAYVRKLKLTYEKG------LSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLE  463 (932)
T ss_pred             HhhccccCChHHHHHHHHHHHHHHhcc------ccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            001  01111111111    1111110      000000100    1 11   24567778888887765   4555555


Q ss_pred             HHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC
Q 036661          450 QMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSD  527 (615)
Q Consensus       450 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~  527 (615)
                      ...... +.|..+-..+++.|.-.|-...|.++|+.+.-+ .+..|.-.| .+...+...|++..+...++...  ...+
T Consensus       464 ~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~lkfy~~~  540 (932)
T KOG2053|consen  464 NGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGH-LIFRRAETSGRSSFASNTFNEHLKFYDSS  540 (932)
T ss_pred             HHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchH-HHHHHHHhcccchhHHHHHHHHHHHHhhh
Confidence            555542 344456677788888889899999988887543 555554333 23455666788888877777654  1111


Q ss_pred             -hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC----CCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661          528 -AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH----SAAPYVEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       528 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                       ..+-..+..+ .+.|.+.+..++..---+++-.    -..+-......+...++.++-...+..|.
T Consensus       541 ~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~  606 (932)
T KOG2053|consen  541 LKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK  606 (932)
T ss_pred             hhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence             1222333333 4667777766654433333221    12233345566667777777777776665

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.15  E-value=0.00021  Score=58.15  Aligned_cols=152  Identities=8%  Similarity=-0.041  Sum_probs=111.9

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 036661          438 NGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALD  517 (615)
Q Consensus       438 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  517 (615)
                      .=|++...+-..+-.+  ..|+...-..|..+..+.|++.+|...|++...- -+..|..+...+.++....+++.+|..
T Consensus        69 ~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~  145 (251)
T COG4700          69 KLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQ  145 (251)
T ss_pred             hcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHH
Confidence            3344444433333222  3677777777888888999999999999888752 345667778888888888999999988


Q ss_pred             HHHhCC-CCC---ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          518 FVQSMP-IKS---DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       518 ~~~~~~-~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      .+++.. .+|   ++.....+...+...|.+++|+..++.++...|+ +.....++..+.++|+.++|..-+..+.+.-.
T Consensus       146 tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~  224 (251)
T COG4700         146 TLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAK  224 (251)
T ss_pred             HHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            888764 222   2334556778888899999999999999999888 77888888899999988888777666655433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.13  E-value=1.8e-05  Score=67.45  Aligned_cols=97  Identities=18%  Similarity=0.120  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661          497 NHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI  571 (615)
Q Consensus       497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  571 (615)
                      ..+..++..+...|++++|...|++.. ..|+    ...+..++..+...|++++|+..++++++..|+++..+..++.+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  115 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            345566666777777777777777664 2222    34667777888888888888888888888888888888888888


Q ss_pred             HHccCC--------------hHHHHHHHHHHHhcCc
Q 036661          572 YALGGR--------------WDGVANLRTMMKRNQV  593 (615)
Q Consensus       572 ~~~~g~--------------~~~A~~~~~~~~~~~~  593 (615)
                      |...|+              +++|.+.+++....++
T Consensus       116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p  151 (172)
T PRK02603        116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP  151 (172)
T ss_pred             HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence            888776              5667777777665443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.10  E-value=3.8e-05  Score=61.05  Aligned_cols=104  Identities=13%  Similarity=0.063  Sum_probs=67.0

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHH
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLL  535 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~  535 (615)
                      ++..++..+.+.|++++|.+.|..+...+.-.+ ....+..++.++.+.|++++|.+.++++. ..|+    ...+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            344555566667777777777777764321111 12345556777777777777777777664 2233    34566677


Q ss_pred             HHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661          536 CACKIHRNIEIGEYVAYRLFELEPHSAAPY  565 (615)
Q Consensus       536 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  565 (615)
                      .++...|+.++|...++++++..|+++.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            777788888888888888888888765543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.10  E-value=6.9e-06  Score=48.42  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=32.0

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCc
Q 036661           21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNN   54 (615)
Q Consensus        21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~   54 (615)
                      +||++|.+|++.|++++|.++|+.|.+.|+.||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            7999999999999999999999999999999974

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.10  E-value=5.8e-06  Score=48.74  Aligned_cols=35  Identities=34%  Similarity=0.567  Sum_probs=30.8

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCCh
Q 036661          121 ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADF  155 (615)
Q Consensus       121 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  155 (615)
                      .+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37899999999999999999999999999988873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.05  E-value=8.8e-06  Score=47.52  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=27.8

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcC
Q 036661          121 ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQA  153 (615)
Q Consensus       121 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  153 (615)
                      .+|+.++.+|++.|+++.|.++|+.|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888776

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.04  E-value=1.3e-05  Score=57.00  Aligned_cols=60  Identities=15%  Similarity=0.073  Sum_probs=54.2

Q ss_pred             HHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          535 LCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       535 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      ...+.+.+++++|.+.++++++++|+++..+..+|.+|...|++++|.+.+++..+..+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            356788999999999999999999999999999999999999999999999999877753

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.04  E-value=4e-06  Score=58.71  Aligned_cols=56  Identities=11%  Similarity=0.182  Sum_probs=47.9

Q ss_pred             HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      ...|++++|++.++++++.+|+++.++..++.+|.+.|++++|.++++++......
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~   57 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD   57 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            46788999999999999999999999999999999999999999999888776653

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.02  E-value=3e-05  Score=65.92  Aligned_cols=93  Identities=14%  Similarity=-0.004  Sum_probs=72.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHH
Q 036661          496 LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMAN  570 (615)
Q Consensus       496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  570 (615)
                      ...+..++..+...|++++|...+++.. ..|+    ..++..+...+...|++++|+..++++++++|..+..+..++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            4456667777778888888888888774 2222    2467888889999999999999999999999999888888888


Q ss_pred             HHH-------ccCChHHHHHHHHHH
Q 036661          571 IYA-------LGGRWDGVANLRTMM  588 (615)
Q Consensus       571 ~~~-------~~g~~~~A~~~~~~~  588 (615)
                      +|.       ..|++++|...+++.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHH
Confidence            888       888887555555443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.02  E-value=6e-05  Score=72.33  Aligned_cols=101  Identities=16%  Similarity=0.187  Sum_probs=80.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhc
Q 036661          431 MIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRK  509 (615)
Q Consensus       431 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  509 (615)
                      -...+...|++++|+..|+++++.+ +.+...+..+..+|...|++++|+..++++..   +.| +...|..++.+|...
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence            4556678899999999999999873 34556888888899999999999999999984   344 466788899999999


Q ss_pred             CChHHHHHHHHhCC-CCCChhhHHHHH
Q 036661          510 GKLKEALDFVQSMP-IKSDAGIWGTLL  535 (615)
Q Consensus       510 g~~~~A~~~~~~~~-~~p~~~~~~~l~  535 (615)
                      |++++|...|++.. ..|+.......+
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999987 566554444343

>PRK15331 chaperone protein SicA; Provisional

Probab=97.99  E-value=6.1e-05  Score=60.84  Aligned_cols=90  Identities=13%  Similarity=0.075  Sum_probs=77.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCCh
Q 036661          501 CMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRW  578 (615)
Q Consensus       501 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  578 (615)
                      ..+.-+...|++++|..+|+-+.  ..-+...|..|+.++...+++++|+..|..+..++++||...+..+.+|...|+.
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence            45555668899999999988765  3445667888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 036661          579 DGVANLRTMMKR  590 (615)
Q Consensus       579 ~~A~~~~~~~~~  590 (615)
                      ++|+..|+...+
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988876

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.98  E-value=0.00022  Score=58.01  Aligned_cols=109  Identities=17%  Similarity=0.172  Sum_probs=95.4

Q ss_pred             HHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC---CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661          483 FNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP---IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEP  559 (615)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  559 (615)
                      +++..++....|+...-..|..++.+.|+..||...|++..   .--|...+..+.++....++...|...++++.+.+|
T Consensus        76 ~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p  155 (251)
T COG4700          76 LREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP  155 (251)
T ss_pred             HHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence            44555555678998888899999999999999999999986   445777888899999999999999999999999998


Q ss_pred             C--CCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          560 H--SAAPYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       560 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      .  +|.....++.+|...|++.+|+..|+...+-
T Consensus       156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~  189 (251)
T COG4700         156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISY  189 (251)
T ss_pred             ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence            5  6888999999999999999999999887764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.95  E-value=1.3e-05  Score=55.45  Aligned_cols=61  Identities=18%  Similarity=0.186  Sum_probs=49.7

Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661          502 MADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA  562 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  562 (615)
                      ++..+.+.|++++|.+.|+++. ..| +...+..++.++...|++++|...++++++.+|++|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5677888899999999998886 445 456888888999999999999999999999999864

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.95  E-value=0.00024  Score=60.65  Aligned_cols=129  Identities=18%  Similarity=0.281  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHH
Q 036661          425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN--RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSC  501 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~  501 (615)
                      ...+..+...+...|++++|...+++..+.+..+.  ...+..+..++.+.|++++|...+++..+.   .| +...+..
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~  111 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNN  111 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHH
Confidence            34566677777777888888888887776432222  246666677777778888887777777742   23 3445555


Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCC
Q 036661          502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGR  577 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  577 (615)
                      ++.++...|+...+..-++..                  ...+++|.+.++++++.+|++   |..++..+...|+
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            666666666655544332221                  123678889999999999986   5555555555544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.95  E-value=0.00033  Score=70.30  Aligned_cols=139  Identities=14%  Similarity=0.057  Sum_probs=86.3

Q ss_pred             CChHHHHHHHHHHHh--c---CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhcc--------CchHHHHHHHHHHHH
Q 036661          423 KTVVSWTTMIAGCAL--N---GEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHA--------GFLEKGWGYFNLMTK  488 (615)
Q Consensus       423 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~  488 (615)
                      .+...|...+++...  .   ++...|..+|++.++.  .|+. ..+..+..++...        .++..+.+..++...
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            466677777666433  2   2366888888888886  6664 3444443333221        112333333333322


Q ss_pred             hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661          489 VYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA  563 (615)
Q Consensus       489 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  563 (615)
                      ....+.+...+..++-.....|++++|...++++. ..|+...|..++..+...|+.++|...++++++++|.++.
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            11123344566666666666788888888888776 5667667777777777888888888888888888887664

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.94  E-value=1.6e-05  Score=46.38  Aligned_cols=32  Identities=28%  Similarity=0.587  Sum_probs=30.2

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 036661           21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEP   52 (615)
Q Consensus        21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~   52 (615)
                      +|+.+|.+|.+.|+++.|.++|+.|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            79999999999999999999999999999887

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.92  E-value=0.00011  Score=55.45  Aligned_cols=93  Identities=17%  Similarity=0.151  Sum_probs=51.8

Q ss_pred             HHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhC
Q 036661          465 AVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHR  542 (615)
Q Consensus       465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~  542 (615)
                      .+...+...|++++|..+++.+.+.  .+.+...+..++.++...|++++|.+.++... ..| +...+..++..+...|
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            3444445555566666665555532  11222444555556666666666666665543 222 2345556666666677


Q ss_pred             ChhHHHHHHHHHhccCC
Q 036661          543 NIEIGEYVAYRLFELEP  559 (615)
Q Consensus       543 ~~~~A~~~~~~~~~~~p  559 (615)
                      ++++|...++++++..|
T Consensus        83 ~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          83 KYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHccCC
Confidence            77777777777776665

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.91  E-value=3.9e-05  Score=56.22  Aligned_cols=80  Identities=21%  Similarity=0.377  Sum_probs=37.1

Q ss_pred             cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHH
Q 036661          438 NGEFVEALDLFHQMMELDLR-PNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEA  515 (615)
Q Consensus       438 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A  515 (615)
                      .|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .   ...| +......++.++.+.|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            35555666666665554211 1223333455555566666666555555 2   1111 122233345555555555555


Q ss_pred             HHHHHh
Q 036661          516 LDFVQS  521 (615)
Q Consensus       516 ~~~~~~  521 (615)
                      ++++++
T Consensus        78 i~~l~~   83 (84)
T PF12895_consen   78 IKALEK   83 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            555543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.91  E-value=5.3e-06  Score=47.87  Aligned_cols=33  Identities=27%  Similarity=0.519  Sum_probs=31.2

Q ss_pred             HHHHhccCCCCCCChHhHHHHHHccCChHHHHH
Q 036661          551 AYRLFELEPHSAAPYVEMANIYALGGRWDGVAN  583 (615)
Q Consensus       551 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  583 (615)
                      ++++++++|+++.+|..||.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            789999999999999999999999999999964

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.85  E-value=9.2e-05  Score=66.99  Aligned_cols=85  Identities=13%  Similarity=0.008  Sum_probs=40.8

Q ss_pred             hcCChHHHHHHHHhCC-CCCCh----hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC---CCChHhHHHHHHccCChH
Q 036661          508 RKGKLKEALDFVQSMP-IKSDA----GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS---AAPYVEMANIYALGGRWD  579 (615)
Q Consensus       508 ~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~  579 (615)
                      +.|++++|...|+.+. ..|+.    ..+..++.++...|++++|...|+++++..|++   +.++..++.+|...|+++
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~  234 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA  234 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence            3444444444444443 22222    233444455555555555555555555554443   233344455555555555


Q ss_pred             HHHHHHHHHHhcC
Q 036661          580 GVANLRTMMKRNQ  592 (615)
Q Consensus       580 ~A~~~~~~~~~~~  592 (615)
                      +|.++|+++.+..
T Consensus       235 ~A~~~~~~vi~~y  247 (263)
T PRK10803        235 KAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHHHHHHC
Confidence            5555555554433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.80  E-value=0.032  Score=52.30  Aligned_cols=109  Identities=17%  Similarity=0.153  Sum_probs=64.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchH
Q 036661          398 NALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLE  477 (615)
Q Consensus       398 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~  477 (615)
                      +.-+.-+...|+...|.++-.+..-|+-.-|..-+.+++..++|++...+...      +-++.-|...+.+|.+.|...
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~  254 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK  254 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence            33344455666667777776666666666777777777777777665554321      112355666666666667766


Q ss_pred             HHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661          478 KGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       478 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      +|..++.++.           +..-+..|.+.|++.+|.+.-.+..
T Consensus       255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence            6666665521           1234566666777766666654433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.78  E-value=5e-05  Score=53.26  Aligned_cols=64  Identities=14%  Similarity=0.195  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhC-ChhHHHHHHHHHhccCC
Q 036661          496 LNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHR-NIEIGEYVAYRLFELEP  559 (615)
Q Consensus       496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p  559 (615)
                      +..|..++..+...|++++|+..|++.. ..| +...+..++.++...| ++++|++.++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4567778888888888888888888876 333 5567888888888888 79999999999998887

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.77  E-value=2e-05  Score=55.12  Aligned_cols=50  Identities=10%  Similarity=0.114  Sum_probs=23.4

Q ss_pred             ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661          472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      ..|++++|+++|+++...  .+-+...+..++.+|.+.|++++|.++++++.
T Consensus         3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345555555555555432  12233444445555555555555555555544

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.74  E-value=0.00079  Score=62.32  Aligned_cols=133  Identities=14%  Similarity=0.096  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661          426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQA-CTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD  504 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  504 (615)
                      .+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.  ++.+...|...++
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence            367778888888888999999999998543 3334455544444 33356777799999999875  4556677888889


Q ss_pred             HHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          505 LLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       505 ~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                      .+.+.|+.+.|..+|++.. .-|.    ...|...+..-.+.|+.+...++.+++.+..|++
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999887 2222    2478888888888999999999999998887773

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.72  E-value=0.0041  Score=56.00  Aligned_cols=173  Identities=10%  Similarity=0.021  Sum_probs=99.9

Q ss_pred             HHHHHHhcCChHHHHHHHhcCCC--CCh-H---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-
Q 036661          400 LIDMYSKCGSIGDARELFYALPE--KTV-V---SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH-  472 (615)
Q Consensus       400 l~~~~~~~g~~~~A~~~~~~~~~--~~~-~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-  472 (615)
                      ....+...|++++|.+.|+.+..  |+. .   ..-.++.++.+.+++++|...+++.++.........+...+.+.+. 
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~  117 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM  117 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence            44445567777777777777665  222 1   2234556677778888888888877775211111222222222211 


Q ss_pred             -c---------------Cc---hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHH
Q 036661          473 -A---------------GF---LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGT  533 (615)
Q Consensus       473 -~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~  533 (615)
                       .               .+   ...|+..|+.+++.+   |+..             -..+|...+..+...- ...-..
T Consensus       118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~-------------ya~~A~~rl~~l~~~l-a~~e~~  180 (243)
T PRK10866        118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQ-------------YTTDATKRLVFLKDRL-AKYELS  180 (243)
T ss_pred             hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCCh-------------hHHHHHHHHHHHHHHH-HHHHHH
Confidence             1               11   233445555555432   3321             1223322222221000 001123


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhccCCCCC---CChHhHHHHHHccCChHHHHHHHHHHH
Q 036661          534 LLCACKIHRNIEIGEYVAYRLFELEPHSA---APYVEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                      .+..|.+.|.+..|..-++.+++..|+.+   +++..++.+|...|..++|.++...+.
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            55668889999999999999999888754   567788899999999999999887664

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.71  E-value=0.047  Score=51.66  Aligned_cols=195  Identities=13%  Similarity=0.071  Sum_probs=117.5

Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHhhc-ccc---hhhHHHHHHHHHHhcCCCC
Q 036661          324 RVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSM-------ISGCG-QSG---ALELGKWFDNYACSGGLKD  392 (615)
Q Consensus       324 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~-~~~---~~~~a~~~~~~~~~~~~~~  392 (615)
                      ..++..++...++.++...|.+.+.-+.-.  .|+...-..+       -+..+ ...   +...-..+++.....++..
T Consensus       298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr  375 (549)
T PF07079_consen  298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR  375 (549)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence            347888889999999999998888776553  3443322111       12222 111   2223344444444444322


Q ss_pred             chHH--HHHHHHHHHhcCC-hHHHHHHHhcCCC---CChHHHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCC
Q 036661          393 NVMV--CNALIDMYSKCGS-IGDARELFYALPE---KTVVSWTTMI----AGCAL---NGEFVEALDLFHQMMELDLRPN  459 (615)
Q Consensus       393 ~~~~--~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~p~  459 (615)
                      -.-+  ...-..-+.+.|. -++|.++++.+..   -|...-|.+.    ..|.+   .....+-+.+-+-+.+.|++|-
T Consensus       376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i  455 (549)
T PF07079_consen  376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI  455 (549)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence            2111  1112233445555 7888898887765   3444333322    22322   2334445555555566787764


Q ss_pred             H----HHHHHHHH--HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661          460 R----VTFLAVLQ--ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       460 ~----~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      .    ..-+.|..  -+...|++.++.-+-..+.   .+.|++.+|..++-++....++++|++++..++
T Consensus       456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            3    34444444  3456899999887777766   668999999999999999999999999999988

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.71  E-value=0.0003  Score=54.71  Aligned_cols=88  Identities=16%  Similarity=-0.021  Sum_probs=54.1

Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-CC---CC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC---CCCChHhHHHHHH
Q 036661          502 MADLLGRKGKLKEALDFVQSMP-IK---SD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH---SAAPYVEMANIYA  573 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~-~~---p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~  573 (615)
                      +..++-..|+.++|+.+|++.. ..   ++ ...+..+..++...|++++|+.++++.+...|+   +......++.++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            4445555666666666666554 11   11 224455666677777777777777777776666   5555666667777


Q ss_pred             ccCChHHHHHHHHHHH
Q 036661          574 LGGRWDGVANLRTMMK  589 (615)
Q Consensus       574 ~~g~~~~A~~~~~~~~  589 (615)
                      ..|++++|++.+-...
T Consensus        87 ~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL  102 (120)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            7777777777665443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.69  E-value=0.0012  Score=66.46  Aligned_cols=136  Identities=14%  Similarity=0.080  Sum_probs=97.9

Q ss_pred             CCCCCHHHHHHHHHHhhc--c---CchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhc--------CChHHHHHHHH
Q 036661          455 DLRPNRVTFLAVLQACTH--A---GFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRK--------GKLKEALDFVQ  520 (615)
Q Consensus       455 ~~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~A~~~~~  520 (615)
                      +.+.|...|...+++...  .   +....|..+|+++.+   ..|+. ..+..+..++...        ++...+.+..+
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            346677888888876443  2   347789999999984   46764 3444444444322        12344555555


Q ss_pred             hCC----CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          521 SMP----IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       521 ~~~----~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      +..    ...++..+..+.......|++++|...++++++++|+ ...|..+|.+|...|+.++|.+.+++.....+.
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            532    2334456766766667789999999999999999995 789999999999999999999999999876653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.66  E-value=0.0093  Score=58.56  Aligned_cols=53  Identities=13%  Similarity=0.086  Sum_probs=32.5

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      .+...+...+.+...+.-|-++|.++-.          ...+++.....+++.+|+.+-++.+
T Consensus       748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP  800 (1081)
T KOG1538|consen  748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP  800 (1081)
T ss_pred             hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence            3444444444455556667777776652          1235666777777777777777766

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.66  E-value=0.0022  Score=51.84  Aligned_cols=97  Identities=8%  Similarity=0.019  Sum_probs=56.1

Q ss_pred             CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHH
Q 036661          423 KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSC  501 (615)
Q Consensus       423 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  501 (615)
                      .+....-.+..-+...|++++|..+|+-+...  .|.. .-|..|..++-..|++++|+..|.....- . +-++..+-.
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~  108 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWA  108 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHH
Confidence            33444444555556666667776666666654  3433 44555566666666677776666666521 1 223445555


Q ss_pred             HHHHHHhcCChHHHHHHHHhCC
Q 036661          502 MADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      ++.++...|+.+.|.+.|+...
T Consensus       109 ag~c~L~lG~~~~A~~aF~~Ai  130 (157)
T PRK15363        109 AAECYLACDNVCYAIKALKAVV  130 (157)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Confidence            6666666666666666666544

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.66  E-value=0.00054  Score=51.03  Aligned_cols=78  Identities=12%  Similarity=0.033  Sum_probs=64.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhHHcCC-cCChhHHHHHHHHHHhcC--------ChhHHHHHHHHHHHhcCCCccchHHH
Q 036661          125 AMIVGFAQMGFLEKVLCLFYNMRLVGI-QADFVTVMGLTQAAIHAK--------HLSLLKSVHSFGIHIGVDADVSVCNT  195 (615)
Q Consensus       125 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~  195 (615)
                      .-|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++.        .....+.+++.|+..+++|+..+|+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            345566667999999999999999999 999999999999987653        23456678888999999999999999


Q ss_pred             HHHHHHc
Q 036661          196 WISAYAK  202 (615)
Q Consensus       196 l~~~~~~  202 (615)
                      ++..+.+
T Consensus       110 vl~~Llk  116 (120)
T PF08579_consen  110 VLGSLLK  116 (120)
T ss_pred             HHHHHHH
Confidence            8887764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.65  E-value=0.00082  Score=57.09  Aligned_cols=61  Identities=20%  Similarity=0.264  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPN--RVTFLAVLQACTHAGFLEKGWGYFNLMT  487 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~  487 (615)
                      .|..++..+...|++++|+..+++.......|.  ..++..+...+...|++++|+..+++..
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al   99 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL   99 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444555555555555555555555554321111  1244455555555555555555555554

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.65  E-value=6.9e-05  Score=42.52  Aligned_cols=31  Identities=39%  Similarity=0.731  Sum_probs=25.1

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhHHcCC
Q 036661          121 ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGI  151 (615)
Q Consensus       121 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  151 (615)
                      .+||.++++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3688888888888888888888888887763

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.64  E-value=0.049  Score=54.27  Aligned_cols=174  Identities=14%  Similarity=0.034  Sum_probs=91.9

Q ss_pred             CCCcccHHHHHHHHHhcCCchhHhHHHHHHhhc-CC--------CCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCch
Q 036661           51 EPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKS-PF--------WSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVA  121 (615)
Q Consensus        51 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  121 (615)
                      .|.+..|..+.......-.++.|...|-+.... |+        -.+.....+=+.  +-.|.+++|++++-.+.++|. 
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL-  765 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL-  765 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence            467777777776655544555555544433211 11        001111111122  223778888888877776653 


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHH
Q 036661          122 SWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQAD----FVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWI  197 (615)
Q Consensus       122 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  197 (615)
                          .|..+.+.|++-.+.++++.=   |-..|    ...++.+-..++....|+.|.+.+.....         ....+
T Consensus       766 ----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~  829 (1189)
T KOG2041|consen  766 ----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI  829 (1189)
T ss_pred             ----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence                355666777777666655431   11111    22466666666666667776666654322         12345


Q ss_pred             HHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHH
Q 036661          198 SAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFY  246 (615)
Q Consensus       198 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  246 (615)
                      +++.+..++++-+.+-+.+++   +....-.+...+.+.|.-++|.+.+
T Consensus       830 ecly~le~f~~LE~la~~Lpe---~s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  830 ECLYRLELFGELEVLARTLPE---DSELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             HHHHHHHhhhhHHHHHHhcCc---ccchHHHHHHHHHhhchHHHHHHHH
Confidence            666666666666655555552   3334445555555566555555544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.61  E-value=0.003  Score=58.80  Aligned_cols=91  Identities=13%  Similarity=0.143  Sum_probs=39.4

Q ss_pred             HHHHHHhc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC----CCh-hH
Q 036661          431 MIAGCALN-GEFVEALDLFHQMMEL----DLRPN--RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVN----PEL-NH  498 (615)
Q Consensus       431 l~~~~~~~-~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~-~~  498 (615)
                      +...|... |+++.|++.|++..+.    | .+.  ..++..+...+.+.|++++|.++|+++....--.    .+. ..
T Consensus       120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            44444444 5666666666555441    1 111  1234445555566666666666666554321100    111 11


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhC
Q 036661          499 YSCMADLLGRKGKLKEALDFVQSM  522 (615)
Q Consensus       499 ~~~l~~~~~~~g~~~~A~~~~~~~  522 (615)
                      +...+-++...|++..|.+.+++.
T Consensus       199 ~l~a~l~~L~~~D~v~A~~~~~~~  222 (282)
T PF14938_consen  199 FLKAILCHLAMGDYVAARKALERY  222 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            222333444555655555555554

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.60  E-value=9.6e-05  Score=41.90  Aligned_cols=30  Identities=27%  Similarity=0.389  Sum_probs=27.1

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 036661           21 QWNSQIREAVDKNEAHKALLLFRRMKKNDI   50 (615)
Q Consensus        21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~   50 (615)
                      +||.+|++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            799999999999999999999999988764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.56  E-value=0.00027  Score=67.14  Aligned_cols=65  Identities=15%  Similarity=-0.018  Sum_probs=45.6

Q ss_pred             ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC---hHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP---YVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      +...+..+..++...|++++|+..++++++++|+++..   |++++.+|..+|+.++|++.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34566667777777777777777777777777776643   777777777777777777777777664

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.55  E-value=0.0037  Score=58.20  Aligned_cols=160  Identities=13%  Similarity=0.179  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHhhcc-CchHHHHHHHHHHHHhhCCCCC----
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMME----LDLRPNR--VTFLAVLQACTHA-GFLEKGWGYFNLMTKVYQVNPE----  495 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----  495 (615)
                      .|.....+|.+. ++++|+..+++..+    .| .|+.  ..+..+...|... |++++|++.|++...-+.....    
T Consensus        77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a  154 (282)
T PF14938_consen   77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA  154 (282)
T ss_dssp             HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH
Confidence            344444555444 88888887777654    34 4443  3677778889888 9999999999998764433332    


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC--Chh---hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC---
Q 036661          496 LNHYSCMADLLGRKGKLKEALDFVQSMP----IKS--DAG---IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA---  563 (615)
Q Consensus       496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---  563 (615)
                      ..++..++..+.+.|++++|.++|+++.    ..+  ...   .+...+-++...||...|.+.+++..+.+|.-..   
T Consensus       155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E  234 (282)
T PF14938_consen  155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE  234 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence            3467788899999999999999998864    111  111   2233344566789999999999999999986443   


Q ss_pred             --ChHhHHHHHHcc--CChHHHHHHHHHH
Q 036661          564 --PYVEMANIYALG--GRWDGVANLRTMM  588 (615)
Q Consensus       564 --~~~~l~~~~~~~--g~~~~A~~~~~~~  588 (615)
                        ....|..++-..  ..+++|+.-|+.+
T Consensus       235 ~~~~~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  235 YKFLEDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence              344455555432  3466666666544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.52  E-value=0.0001  Score=45.87  Aligned_cols=42  Identities=19%  Similarity=0.307  Sum_probs=37.4

Q ss_pred             hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHH
Q 036661          529 GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMAN  570 (615)
Q Consensus       529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  570 (615)
                      .++..+..++...|++++|++.++++++.+|+++..+..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            357788899999999999999999999999999998888875

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.49  E-value=0.00081  Score=62.22  Aligned_cols=130  Identities=12%  Similarity=0.066  Sum_probs=102.6

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhCC--CCCChhhHHHHHHH
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR-KGKLKEALDFVQSMP--IKSDAGIWGTLLCA  537 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~  537 (615)
                      .+|..+++...+.+..+.|..+|.++.+.  -..+..+|...+..-.+ .++.+.|.++|+...  ...+...|...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            36778888888888899999999999843  23345667777666444 566666999999986  66677889999999


Q ss_pred             HHHhCChhHHHHHHHHHhccCCCCC---CChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          538 CKIHRNIEIGEYVAYRLFELEPHSA---APYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       538 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      +...++.+.|+.+|++++..-|...   ..|...+..-.+.|+.+.+.++.+++.+.-
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~  137 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF  137 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999998776543   588889999999999999999999998754

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.0011  Score=61.56  Aligned_cols=97  Identities=11%  Similarity=0.015  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661          497 NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL  574 (615)
Q Consensus       497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  574 (615)
                      .++..++-+|.+.+++.+|+...++.+  .+++...+..-+.++...|+++.|+..|+++++++|+|..+-..+..+-.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            456778999999999999999999987  566777888899999999999999999999999999999999889888887


Q ss_pred             cCChHHH-HHHHHHHHhcCc
Q 036661          575 GGRWDGV-ANLRTMMKRNQV  593 (615)
Q Consensus       575 ~g~~~~A-~~~~~~~~~~~~  593 (615)
                      ..++.+. .++|.+|-....
T Consensus       338 ~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHhhccc
Confidence            7776555 888999876443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.49  E-value=0.098  Score=49.53  Aligned_cols=128  Identities=15%  Similarity=0.094  Sum_probs=78.5

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhH-HHHHHHHH
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIW-GTLLCACK  539 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~  539 (615)
                      .|..++.+-.+..-++.|..+|-+..+..-+.+++.++++++..++ .|+...|..+|+--. .-||...+ ...+..+.
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi  477 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI  477 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            4555555555556677777777777755225566667777666554 567777777776644 34444433 45555666


Q ss_pred             HhCChhHHHHHHHHHhccCCCC--CCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          540 IHRNIEIGEYVAYRLFELEPHS--AAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       540 ~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ..++-+.|..+|++.++.-.+.  ..+|..++.--..-|+...+..+=+++.+
T Consensus       478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            6777777777777665432222  45666666666666777666665555543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.46  E-value=0.00028  Score=50.09  Aligned_cols=65  Identities=15%  Similarity=0.146  Sum_probs=50.4

Q ss_pred             HHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh
Q 036661          503 ADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE  567 (615)
Q Consensus       503 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  567 (615)
                      ...|.+.+++++|.++++.+. ..| +...+...+.++...|++++|.+.++++++..|+++.....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            356778888888888888876 334 55577778888888999999999999999999986654443

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.45  E-value=0.0013  Score=63.38  Aligned_cols=118  Identities=14%  Similarity=0.026  Sum_probs=92.1

Q ss_pred             CCChHHHHHHHHHhhcCCChhHHHHhhccCCC-C-----CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHH
Q 036661           86 WSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPD-R-----DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVM  159 (615)
Q Consensus        86 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  159 (615)
                      +.+......+++.+....+++.+..++-.... |     -..+.+++++.|.+.|..+.+++++..=...|+-||..|++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            44555566667777777778888877777653 2     23456789999999999999999999988999999999999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHcc
Q 036661          160 GLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKC  203 (615)
Q Consensus       160 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  203 (615)
                      .++..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999988888777666777776666666554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.45  E-value=0.097  Score=48.62  Aligned_cols=257  Identities=14%  Similarity=0.091  Sum_probs=168.7

Q ss_pred             cHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh--cccchhhHHHHHHHHHHhcCCCCchHH--HHH
Q 036661          326 SWTAMISGYAQ--KGDLDEALRLFFAMEAAGEVPDLVTVLSMISGC--GQSGALELGKWFDNYACSGGLKDNVMV--CNA  399 (615)
Q Consensus       326 ~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~  399 (615)
                      .|..|-.++..  .|+-..|.++-.+.... +..|......++.+-  .-.|+.+.|.+-|+.|...   |....  +..
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg  159 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG  159 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence            45556555554  56666776665554322 345555566666553  4568999999999999763   22222  233


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCC--CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHh--h
Q 036661          400 LIDMYSKCGSIGDARELFYALPE--KT-VVSWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNRV--TFLAVLQAC--T  471 (615)
Q Consensus       400 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~--~~~~l~~~~--~  471 (615)
                      |.-.-.+.|+.+.|...-+....  |. .-.+...+...+..|+++.|+++++.-.+.. +.++..  .-..|+.+-  .
T Consensus       160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s  239 (531)
T COG3898         160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS  239 (531)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence            33344577888888887776554  22 3477889999999999999999999877643 455542  222233221  1


Q ss_pred             c-cCchHHHHHHHHHHHHhhCCCCChhH-HHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHH-
Q 036661          472 H-AGFLEKGWGYFNLMTKVYQVNPELNH-YSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIG-  547 (615)
Q Consensus       472 ~-~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A-  547 (615)
                      . ..+...|...-.+..   .+.|+..- -..-..+|.+.|+..++-.+++.+= ..|.+.++..+..+  +.|+.... 
T Consensus       240 ~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a--r~gdta~dR  314 (531)
T COG3898         240 LLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA--RSGDTALDR  314 (531)
T ss_pred             HhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh--cCCCcHHHH
Confidence            1 234556665555544   56677532 2334588999999999999999874 66777666544433  45554322 


Q ss_pred             HHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          548 EYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       548 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      .+-.+++.++.|++.+....++..-...|++..|+.--+.....
T Consensus       315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~  358 (531)
T COG3898         315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE  358 (531)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            34456667889999999999999999999999888777665443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.0069  Score=56.27  Aligned_cols=160  Identities=14%  Similarity=0.092  Sum_probs=88.2

Q ss_pred             HHHhcCChHHHHHHHhcCCCCCh-HHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHH---HH----------
Q 036661          403 MYSKCGSIGDARELFYALPEKTV-VSWTTMIA--GCALNGEFVEALDLFHQMMELDLRPNRVTFL---AV----------  466 (615)
Q Consensus       403 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~---~l----------  466 (615)
                      ++.-.|+.++|.+.--.+.+-+. ..+...++  ++.-..+.+.+...|++.+..  .|+...-.   ..          
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~  255 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKER  255 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhh
Confidence            34445555555544433333211 12222222  223345566666666666554  34332111   11          


Q ss_pred             HHHhhccCchHHHHHHHHHHHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHH
Q 036661          467 LQACTHAGFLEKGWGYFNLMTKVYQVNPE-----LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACK  539 (615)
Q Consensus       467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~  539 (615)
                      ..-..+.|.+..|.+.|.+.+   ++.|+     ...|...+....+.|+.++|+.-.+... ..|. ...+.....++.
T Consensus       256 gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l  332 (486)
T KOG0550|consen  256 GNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL  332 (486)
T ss_pred             hhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence            223456788888888888777   44444     4456666667778888888888887776 3322 123333445566


Q ss_pred             HhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661          540 IHRNIEIGEYVAYRLFELEPHSAAPYVEM  568 (615)
Q Consensus       540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  568 (615)
                      ..+++++|++.++++.+...+ +.....+
T Consensus       333 ~le~~e~AV~d~~~a~q~~~s-~e~r~~l  360 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKAMQLEKD-CEIRRTL  360 (486)
T ss_pred             HHHHHHHHHHHHHHHHhhccc-cchHHHH
Confidence            678888888888888776655 3333333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.43  E-value=0.0018  Score=58.80  Aligned_cols=101  Identities=14%  Similarity=0.074  Sum_probs=68.8

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHH
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLL  535 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~  535 (615)
                      .|........+.|++++|...|+.+.+.+.-.+ ....+..++.+|...|++++|...|+++. ..|+    ...+..++
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            444444444556778888888888775431111 02456667788888888888888887775 2232    44556667


Q ss_pred             HHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661          536 CACKIHRNIEIGEYVAYRLFELEPHSA  562 (615)
Q Consensus       536 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  562 (615)
                      .++...|+.++|...++++++..|++.
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            777788999999999999999988854

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.43  E-value=0.18  Score=51.10  Aligned_cols=155  Identities=11%  Similarity=0.001  Sum_probs=85.2

Q ss_pred             HHHhcCChhHHHHHHHHHH--------hCCCCCCcccHHHH-----HHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHH
Q 036661           28 EAVDKNEAHKALLLFRRMK--------KNDIEPNNLTFPFI-----AKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTT   94 (615)
Q Consensus        28 ~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   94 (615)
                      ++.+..++++-..+.+.++        +.|++....-|..+     +.-+...+.+..|.++...+-..-.+- ..++..
T Consensus       398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~  476 (829)
T KOG2280|consen  398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE  476 (829)
T ss_pred             cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence            3444455555444443332        34565555444443     455566677888888777664322122 556666


Q ss_pred             HHHHhhcCCC---hhHHHHhhccCCC--CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcC----CcCChhHHHHHHHHH
Q 036661           95 MVDMYAKCDR---LDCAYKLFDKMPD--RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVG----IQADFVTVMGLTQAA  165 (615)
Q Consensus        95 l~~~~~~~g~---~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~  165 (615)
                      ....+.+..+   -+-+..+-+++..  ....+|..+.+.-...|+++-|..+++.=...+    +-.+..-+...+.-+
T Consensus       477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka  556 (829)
T KOG2280|consen  477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA  556 (829)
T ss_pred             HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence            6666665532   2233333344444  345677777877778888888888776432222    111222355556666


Q ss_pred             HhcCChhHHHHHHHHHHH
Q 036661          166 IHAKHLSLLKSVHSFGIH  183 (615)
Q Consensus       166 ~~~~~~~~a~~~~~~~~~  183 (615)
                      ...|+.+....++-.+.+
T Consensus       557 ies~d~~Li~~Vllhlk~  574 (829)
T KOG2280|consen  557 IESGDTDLIIQVLLHLKN  574 (829)
T ss_pred             HhcCCchhHHHHHHHHHH
Confidence            667777766666655554

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.42  E-value=0.0015  Score=62.82  Aligned_cols=119  Identities=12%  Similarity=0.047  Sum_probs=89.3

Q ss_pred             CccchHHHHHHHHHccCCHHHHHHHHHhcccCC----CCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHH
Q 036661          188 ADVSVCNTWISAYAKCNDLKMAELVFRGIEEGL----RTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVS  263 (615)
Q Consensus       188 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  263 (615)
                      .+......+++.+....+++.+..++.+....+    --..+..++++.|...|..++++.+++.=...|+-||..|++.
T Consensus        64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~  143 (429)
T PF10037_consen   64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL  143 (429)
T ss_pred             CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence            344455556666666667777777776665531    1234456888999999999999999998888999999999999


Q ss_pred             HHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhc
Q 036661          264 LLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKC  306 (615)
Q Consensus       264 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  306 (615)
                      ++..+.+.|++..|.++...|...+.-.++.++..-+.+|.+.
T Consensus       144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999998888887666666666555555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.40  E-value=0.0029  Score=47.24  Aligned_cols=80  Identities=15%  Similarity=0.081  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHhhcccc--------hhhHHHHHHHHHHhcCCCCchHHH
Q 036661          327 WTAMISGYAQKGDLDEALRLFFAMEAAGE-VPDLVTVLSMISGCGQSG--------ALELGKWFDNYACSGGLKDNVMVC  397 (615)
Q Consensus       327 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~  397 (615)
                      ....|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+..+..        .+-....+++.|...+++|+..+|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34456667777999999999999999999 899999999998876543        345667888899999999999999


Q ss_pred             HHHHHHHHh
Q 036661          398 NALIDMYSK  406 (615)
Q Consensus       398 ~~l~~~~~~  406 (615)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            999887765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.38  E-value=0.0058  Score=47.61  Aligned_cols=94  Identities=14%  Similarity=0.154  Sum_probs=68.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHH
Q 036661          430 TMIAGCALNGEFVEALDLFHQMMELDLRPNR--VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLL  506 (615)
Q Consensus       430 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~  506 (615)
                      .+..++-..|+.++|+.+|++....|.....  ..+..+.+.+...|++++|..+++.....+.-.+ +......+.-++
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence            3556677889999999999999998866553  4677778888999999999999998886532111 122233345677


Q ss_pred             HhcCChHHHHHHHHhCC
Q 036661          507 GRKGKLKEALDFVQSMP  523 (615)
Q Consensus       507 ~~~g~~~~A~~~~~~~~  523 (615)
                      ...|+.++|++.+-...
T Consensus        86 ~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            88899999988876544

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.35  E-value=0.14  Score=48.17  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=83.3

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHh
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIH  541 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~  541 (615)
                      +.+..+.-+...|....|.++-.    ++.+ |+..-|...+.+|+..|+|++-.++...   +-++..|...+.+|.+.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY  250 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence            44445566667787777666544    4444 8888899999999999999988887654   23457888899999999


Q ss_pred             CChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661          542 RNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       542 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                      |+..+|..+..++         .+...+..|.+.|+|.+|.+.--+.
T Consensus       251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence            9999999998881         1256788899999999998774433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.0072  Score=54.17  Aligned_cols=117  Identities=9%  Similarity=0.003  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHH
Q 036661          443 EALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG---KLKEALDFV  519 (615)
Q Consensus       443 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~  519 (615)
                      ....-++.-...+ +-|...|..|..+|...|+.+.|..-|....+-  .+++...+..+++++..+.   ...++..+|
T Consensus       140 ~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         140 ALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             HHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            3333344444442 445678999999999999999999999988853  3344566777777765443   456788899


Q ss_pred             HhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661          520 QSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA  562 (615)
Q Consensus       520 ~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  562 (615)
                      +++.  .+.+......|...+...|++.+|...++.+++..|.+.
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            8887  344556677777888899999999999999999887643

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.33  E-value=0.0011  Score=61.11  Aligned_cols=129  Identities=9%  Similarity=0.039  Sum_probs=87.1

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHH---HHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCChh
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLM---TKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--------IKSDAG  529 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~  529 (615)
                      .|..|...|.-.|+++.|+...+.=   .+.+|-... ...+..+..++.-.|+++.|.+.++...        ......
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            4555666666678888887765532   233343322 3466778888888899999988887653        112233


Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccC------CCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELE------PHSAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      .-..|...|.-..++++|+.+.++=+.+.      -....++.+|+++|...|..++|..+.++-++
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            44567777777778888888877655432      22356788899999999999999888776654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.30  E-value=0.04  Score=52.10  Aligned_cols=158  Identities=19%  Similarity=0.116  Sum_probs=87.8

Q ss_pred             HHHHHHhcCChHHHHHHHhcCCCC-------ChHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036661          400 LIDMYSKCGSIGDARELFYALPEK-------TVVSWTTMIAGCAL---NGEFVEALDLFHQMMELDLRPNRVTFLAVLQA  469 (615)
Q Consensus       400 l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  469 (615)
                      ++-.|....+++...++++.+...       .+..-...+-++.+   .|+.++|+.++..+....-.+++.++..+.+.
T Consensus       147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI  226 (374)
T PF13281_consen  147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI  226 (374)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            333455555555555555555441       11122233344445   67777777777775554446666677666655


Q ss_pred             hhc---------cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH----HHHHH---HhC-----C--CCC
Q 036661          470 CTH---------AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE----ALDFV---QSM-----P--IKS  526 (615)
Q Consensus       470 ~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~---~~~-----~--~~p  526 (615)
                      |-.         ....++|...|.+.-   .+.|+...--.++.++.-.|...+    ..++-   ...     .  ...
T Consensus       227 yKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~  303 (374)
T PF13281_consen  227 YKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ  303 (374)
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence            421         123566666666544   445654433334444444443222    22222   110     1  223


Q ss_pred             ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      +...+.+++.++.-.|++++|.+.+++++++.|.
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence            4445577888889999999999999999999765

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.23  E-value=0.011  Score=51.90  Aligned_cols=50  Identities=10%  Similarity=0.003  Sum_probs=38.5

Q ss_pred             HHHHHHHhCChhHHHHHHHHHhccCCCCC---CChHhHHHHHHccCChHHHHH
Q 036661          534 LLCACKIHRNIEIGEYVAYRLFELEPHSA---APYVEMANIYALGGRWDGVAN  583 (615)
Q Consensus       534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~  583 (615)
                      ++..|.+.|.+..|..-++.+++..|+.+   .++..++.+|.+.|..+.|.+
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            45567789999999999999999999864   466778889999999885543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.22  E-value=0.00027  Score=50.90  Aligned_cols=61  Identities=8%  Similarity=0.071  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccC----CC---CCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELE----PH---SAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ++..+...+...|++++|+..+++++++.    ++   -..++..+|.+|...|++++|++++++..+
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            55667777777788888888877777531    22   245777888999999999999999888754

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.20  E-value=0.043  Score=49.49  Aligned_cols=54  Identities=15%  Similarity=0.061  Sum_probs=27.0

Q ss_pred             HHHHHhcCCHHHHHHHHhccCCC--Cc-c---cHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036661          300 ISMYSKCGDIDSARFLFDGMCDR--TR-V---SWTAMISGYAQKGDLDEALRLFFAMEAA  353 (615)
Q Consensus       300 ~~~~~~~~~~~~a~~~~~~~~~~--~~-~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~  353 (615)
                      ...+...|++++|.+.|+.+...  +. .   ..-.+..++.+.+++++|...+++..+.
T Consensus        39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            33344556666666666655221  11 1   1123445555666666666666665554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.18  E-value=0.0068  Score=48.11  Aligned_cols=91  Identities=15%  Similarity=0.038  Sum_probs=56.9

Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-CCC----ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC---ChHhHHHHHH
Q 036661          502 MADLLGRKGKLKEALDFVQSMP-IKS----DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA---PYVEMANIYA  573 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~  573 (615)
                      -+....+.|++++|.+.|+.+. .-|    ....-..++.++.+.+++++|...+++.++++|.++.   ++...|-++.
T Consensus        16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY   95 (142)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            3444456677777777776664 111    2334556777777788888888888888888877654   3444455555


Q ss_pred             ccCC---------------hHHHHHHHHHHHhcC
Q 036661          574 LGGR---------------WDGVANLRTMMKRNQ  592 (615)
Q Consensus       574 ~~g~---------------~~~A~~~~~~~~~~~  592 (615)
                      ....               ..+|...|+++.+.-
T Consensus        96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y  129 (142)
T PF13512_consen   96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY  129 (142)
T ss_pred             HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence            5544               566667776666544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.17  E-value=0.044  Score=47.83  Aligned_cols=134  Identities=13%  Similarity=0.084  Sum_probs=99.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhC----CCCChhHHHHHH
Q 036661          428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ----VNPELNHYSCMA  503 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~  503 (615)
                      -+.++..+.-.|.+.-....++++++...+-++.....|++.-.+.||.+.|..+|++..+..+    ..-...+.....
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            3455666666788888888999999876555677888888899999999999999997765433    222333444455


Q ss_pred             HHHHhcCChHHHHHHHHhCC-C-CCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          504 DLLGRKGKLKEALDFVQSMP-I-KSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       504 ~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                      ..|.-++++.+|...+.+++ . +.++...+.-+-+..-.|+..+|++.++.+.+..|..
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            66777889999999999987 2 3334445555555566789999999999999999974

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.17  E-value=0.24  Score=47.23  Aligned_cols=59  Identities=14%  Similarity=0.028  Sum_probs=49.8

Q ss_pred             hHHHHHHH--HHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661          530 IWGTLLCA--CKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       530 ~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                      .-+.+..+  ...+|++.++.-.-.-+.++.| ++.+|..+|-++....+|++|.++++.+.
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            44555544  4568999999999999999999 69999999999999999999999998764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK11906 transcriptional regulator; Provisional

Probab=97.08  E-value=0.0064  Score=58.19  Aligned_cols=145  Identities=12%  Similarity=0.144  Sum_probs=96.2

Q ss_pred             ChHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHhhcc---------CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 036661          440 EFVEALDLFHQMME-LDLRPNR-VTFLAVLQACTHA---------GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR  508 (615)
Q Consensus       440 ~~~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  508 (615)
                      ..+.|+.+|.+... ..+.|+. ..|..+..++...         .+..+|.+..++..+  --+-|......++.++.-
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence            45678888888882 2246665 4666666655432         234456666666663  223455666677777788


Q ss_pred             cCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh--HHHHHHccCChHHHHHH
Q 036661          509 KGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE--MANIYALGGRWDGVANL  584 (615)
Q Consensus       509 ~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~  584 (615)
                      .|+++.|..+|++.. ..|+ ..+|......+...|+.++|.+.++++++++|....+-..  .++.|+.. ..++|+.+
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~  429 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL  429 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence            888999999998887 5555 4567777777778899999999999999999975444333  33345544 45667766


Q ss_pred             HHH
Q 036661          585 RTM  587 (615)
Q Consensus       585 ~~~  587 (615)
                      |-+
T Consensus       430 ~~~  432 (458)
T PRK11906        430 YYK  432 (458)
T ss_pred             Hhh
Confidence            643

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.0018  Score=60.17  Aligned_cols=66  Identities=9%  Similarity=0.024  Sum_probs=61.0

Q ss_pred             hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          528 AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ..++..+..++.+.+++..|++...++++++|+|..+++.-|.+|...|+++.|+..|+++++..+
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P  322 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP  322 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence            346677888999999999999999999999999999999999999999999999999999987654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.98  E-value=0.0062  Score=56.42  Aligned_cols=130  Identities=13%  Similarity=0.085  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHh---h-CCCCChh
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQM----MELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKV---Y-QVNPELN  497 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~~  497 (615)
                      .|..|...|.-.|+++.|+..-+.=    .+-|-+.. ...+..+..++.-.|+++.|.+.|+....-   . .-.....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            4555666666677788777654332    22232222 245667777778888888888877765421   0 1112234


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC--------CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP--------IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE  556 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  556 (615)
                      +...|...|.-..++++|++++.+-.        ..-....+..|..++...|..++|..+.++.++
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            45567777777778888888876643        111233556677777778888888877776655

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.53  Score=47.88  Aligned_cols=328  Identities=11%  Similarity=0.027  Sum_probs=174.4

Q ss_pred             HHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhh--hhhhHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 036661          228 SIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEAL--VQGRLVHSHGIHYGFDLDVSVINTLISMYSK  305 (615)
Q Consensus       228 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  305 (615)
                      .+|.-+...+.+..|+++-..+...-... ...|.....-..+..+.  +.+.+.+.+-.+... .+...|..+..-...
T Consensus       442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~  519 (829)
T KOG2280|consen  442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQ  519 (829)
T ss_pred             hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHh
Confidence            45566666777777777766663321111 34444444444333211  112222222222212 333456667777777


Q ss_pred             cCCHHHHHHHHhccCCC--------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhH
Q 036661          306 CGDIDSARFLFDGMCDR--------TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALEL  377 (615)
Q Consensus       306 ~~~~~~a~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  377 (615)
                      .|+.+-|..+++.-+..        +..-+..-+.-....|+.+....++-.+...   .+...|...+      .+...
T Consensus       520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~  590 (829)
T KOG2280|consen  520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPL  590 (829)
T ss_pred             cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhchh
Confidence            88888888887664332        1223444455556666666666655555432   1111221111      13344


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHH-HhcC-----CCCChHHHHHHHHHHHhcCC----------h
Q 036661          378 GKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAREL-FYAL-----PEKTVVSWTTMIAGCALNGE----------F  441 (615)
Q Consensus       378 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~-----~~~~~~~~~~l~~~~~~~~~----------~  441 (615)
                      |..+|..+.+..-.      ..+-+.|-...+...+-.+ ++..     .++-..........+.+...          .
T Consensus       591 a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~  664 (829)
T KOG2280|consen  591 ALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ  664 (829)
T ss_pred             hhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            44555544432101      1111222222222221111 1110     01111122233333433332          1


Q ss_pred             HHHHHHHHHHHH-cCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 036661          442 VEALDLFHQMME-LDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQ  520 (615)
Q Consensus       442 ~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  520 (615)
                      .+-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+     -||...|..-+.+++..+++++-+++-+
T Consensus       665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAk  739 (829)
T KOG2280|consen  665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAK  739 (829)
T ss_pred             HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence            112222222322 2323333455555666777888888888776655     4888888888999999999998888877


Q ss_pred             hCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661          521 SMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       521 ~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                      ...   .+..|.-...+|.+.|+.++|.+++-+.-.        +...+.+|.+.|++.+|.+.--+-
T Consensus       740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~  796 (829)
T KOG2280|consen  740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH  796 (829)
T ss_pred             ccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence            765   355677788999999999999988765432        226788999999999998875443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.97  E-value=0.47  Score=47.11  Aligned_cols=181  Identities=15%  Similarity=0.182  Sum_probs=114.8

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036661          393 NVMVCNALIDMYSKCGSIGDARELFYALPEK---TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQA  469 (615)
Q Consensus       393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  469 (615)
                      ....|...+..-...|+.+.+.-+|+...-|   -...|-..+.-....|+.+-|..++....+--++-.+.+-..-..-
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            4456677777777888888888888877654   2234544444444558888887777776665333333333222333


Q ss_pred             hhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHH---HHHHhCC-CCCChhhHHHHH----H-HHH
Q 036661          470 CTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEAL---DFVQSMP-IKSDAGIWGTLL----C-ACK  539 (615)
Q Consensus       470 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~l~----~-~~~  539 (615)
                      +...|+++.|..+++.+..+.   |+. ..-..-+....+.|+.+.+.   +++.... ..-+......+.    . .+.
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~  452 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK  452 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence            455678999999999998652   543 23333445566788888887   5555443 222222222222    1 123


Q ss_pred             HhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC
Q 036661          540 IHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG  576 (615)
Q Consensus       540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  576 (615)
                      -.++.+.|..++.++.+..|++...|..+.+.....+
T Consensus       453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            3678899999999999999998888888888777665

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.96  E-value=0.016  Score=50.79  Aligned_cols=144  Identities=15%  Similarity=0.151  Sum_probs=75.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh-HHHHHHHH
Q 036661          429 TTMIAGCALNGEFVEALDLFHQMMELDLR-PN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN-HYSCMADL  505 (615)
Q Consensus       429 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~  505 (615)
                      -.....+...|++.+|...|+.+...... |- ......++.++.+.|+++.|...+++..+.+.-.|... .+-.++.+
T Consensus         9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~   88 (203)
T PF13525_consen    9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS   88 (203)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence            33445556667777777777777664211 11 23445556666777777777777777665543333221 11111111


Q ss_pred             HHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC-----------------hHhH
Q 036661          506 LGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP-----------------YVEM  568 (615)
Q Consensus       506 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l  568 (615)
                      +...  .....                   ......+...+|...++.+++..|+++.+                 -..+
T Consensus        89 ~~~~--~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i  147 (203)
T PF13525_consen   89 YYKQ--IPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI  147 (203)
T ss_dssp             HHHH--HHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHh--Cccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111  00000                   00122334556667777777777765432                 2346


Q ss_pred             HHHHHccCChHHHHHHHHHHHhcCc
Q 036661          569 ANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       569 ~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +..|.+.|+|..|..-++.+.+.-+
T Consensus       148 a~~Y~~~~~y~aA~~r~~~v~~~yp  172 (203)
T PF13525_consen  148 ARFYYKRGKYKAAIIRFQYVIENYP  172 (203)
T ss_dssp             HHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCC
Confidence            8899999999999999999987643

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.054  Score=47.33  Aligned_cols=135  Identities=10%  Similarity=0.063  Sum_probs=105.5

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCChhhHHH
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--------IKSDAGIWGT  533 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~  533 (615)
                      ..+.++..+.-.+.+.-....+.+.++. .-+.++.....|++.-...|+.+.|...|++..        .+-.......
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n  257 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN  257 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence            3455667777778888889999999864 444566777889999999999999999998553        1122223333


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcccCC
Q 036661          534 LLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFP  597 (615)
Q Consensus       534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  597 (615)
                      ....+.-++|+..|...+.+.++.+|.++.+.+.-+-++.-.|+..+|++.++.|.+..+....
T Consensus       258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence            4445566789999999999999999999999999999999999999999999999887765443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.94  E-value=0.54  Score=47.36  Aligned_cols=203  Identities=11%  Similarity=0.079  Sum_probs=133.6

Q ss_pred             CCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCcccHHHH-------HHHHHhcCCchhHhHHHHHHhhcCCC
Q 036661           15 RSSTINQWNSQIREAVDKNEAHKALLLFRRMKKN-DIEPNNLTFPFI-------AKACAKLSDFLYSQMIHGHIVKSPFW   86 (615)
Q Consensus        15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~   86 (615)
                      .|.+. .|..+...-...-.++.|...|-+.... |++.-.. +..+       ....+--|++++|.+++-++-+.+  
T Consensus       689 nPHpr-LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkr-l~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  689 NPHPR-LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKR-LRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             CCchH-HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHH-hhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence            34445 7888877777777777777777766542 3321111 1111       112234588999999988876654  


Q ss_pred             CChHHHHHHHHHhhcCCChhHHHHhhccCCCC-----CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHH
Q 036661           87 SDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDR-----DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL  161 (615)
Q Consensus        87 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  161 (615)
                             ..+..+.+.|||-.+.++++.-...     -..+|+.+...+.....|++|.+.+..-...         ...
T Consensus       765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~  828 (1189)
T KOG2041|consen  765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ  828 (1189)
T ss_pred             -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence                   3466778889999999988774432     2357899999999999999999988764321         234


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhh
Q 036661          162 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDD  241 (615)
Q Consensus       162 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  241 (615)
                      +.++.+...++..+.+...     ++.+....-.+..++.+.|.-++|.+.|-+..  .|.     .-+..|...++|.+
T Consensus       829 ~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk-----aAv~tCv~LnQW~~  896 (1189)
T KOG2041|consen  829 IECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK-----AAVHTCVELNQWGE  896 (1189)
T ss_pred             HHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH-----HHHHHHHHHHHHHH
Confidence            5566666666555544443     34466777788889999999999888876554  332     23455666677777


Q ss_pred             HHHHHHHH
Q 036661          242 SLNFYRHM  249 (615)
Q Consensus       242 a~~~~~~m  249 (615)
                      |.++-+..
T Consensus       897 avelaq~~  904 (1189)
T KOG2041|consen  897 AVELAQRF  904 (1189)
T ss_pred             HHHHHHhc
Confidence            87776654

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.87  E-value=0.015  Score=49.54  Aligned_cols=96  Identities=11%  Similarity=0.163  Sum_probs=71.0

Q ss_pred             HHHhcc--CCCCcccHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccc-------------
Q 036661          314 FLFDGM--CDRTRVSWTAMISGYAQ-----KGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSG-------------  373 (615)
Q Consensus       314 ~~~~~~--~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------  373 (615)
                      ..|+..  ..++..+|..++..|.+     .|..+=....++.|.+-|+.-|..+|+.|+..+-+..             
T Consensus        35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h  114 (228)
T PF06239_consen   35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH  114 (228)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence            344444  44566677777777664     4667777778888888899999999999998876532             


Q ss_pred             ---hhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 036661          374 ---ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGS  409 (615)
Q Consensus       374 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  409 (615)
                         +-+-|.+++++|...|+-||..++..|++.+++.+.
T Consensus       115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence               346778888888888888888888888888876654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.83  E-value=0.0012  Score=47.52  Aligned_cols=59  Identities=19%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCC-----CC---CC-hhhHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661          499 YSCMADLLGRKGKLKEALDFVQSMP-----IK---SD-AGIWGTLLCACKIHRNIEIGEYVAYRLFEL  557 (615)
Q Consensus       499 ~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  557 (615)
                      ++.++.+|.+.|++++|++.+++..     ..   |+ ..++..++.++...|++++|++++++++++
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4444444444444444444444432     11   11 234555666666667777777777666543

...

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.82  E-value=0.0067  Score=53.66  Aligned_cols=101  Identities=15%  Similarity=0.090  Sum_probs=59.1

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC-ChhhHHHHH
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVN-PELNHYSCMADLLGRKGKLKEALDFVQSMP----IKS-DAGIWGTLL  535 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~  535 (615)
                      .|+.-+. +.+.|++..|...|....+.+.-. -....+-.|+.++...|++++|..+|..+.    ..| -+..+..++
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            4554444 445566777777777777532111 012334457777777777777766665553    112 234555566


Q ss_pred             HHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661          536 CACKIHRNIEIGEYVAYRLFELEPHSAA  563 (615)
Q Consensus       536 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~  563 (615)
                      .+..+.|+.++|...++++++..|+.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            6666667777777777777776666443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.82  E-value=0.0048  Score=47.19  Aligned_cols=87  Identities=17%  Similarity=0.150  Sum_probs=40.6

Q ss_pred             HHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC----CCChHhHHHHHHccCChH
Q 036661          506 LGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS----AAPYVEMANIYALGGRWD  579 (615)
Q Consensus       506 ~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~  579 (615)
                      +...|+.+.|++.|.+..  .+.....|+.-..++.-+|+.++|+.-+++++++.-+.    ...|+..+.+|...|+-+
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd  132 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD  132 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence            344455555555554443  22234445555555555555555555555555543221    123444445555555555


Q ss_pred             HHHHHHHHHHhcC
Q 036661          580 GVANLRTMMKRNQ  592 (615)
Q Consensus       580 ~A~~~~~~~~~~~  592 (615)
                      .|+.-|+...+-|
T Consensus       133 ~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  133 AARADFEAAAQLG  145 (175)
T ss_pred             HHHHhHHHHHHhC
Confidence            5555555444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.81  E-value=0.015  Score=48.00  Aligned_cols=68  Identities=18%  Similarity=0.148  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh-----cCcccCC
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR-----NQVKKFP  597 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~  597 (615)
                      ....++..+...|++++|...+++++..+|-+...|..+..+|...|+..+|.++|+++.+     -|+.|+|
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~  136 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP  136 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence            4556777788899999999999999999999999999999999999999999999998854     4555443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.79  E-value=0.015  Score=49.56  Aligned_cols=98  Identities=9%  Similarity=0.015  Sum_probs=68.6

Q ss_pred             HHHHhcccCCCCcchHHHHHHHHhc-----CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCc--------------
Q 036661          211 LVFRGIEEGLRTVVSWNSIIGGCTY-----GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCP--------------  271 (615)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------------  271 (615)
                      ..|+.......+..+|..++..|.+     .|..+=....+..|.+-|+.-|..+|+.|+..+=+.              
T Consensus        35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h  114 (228)
T PF06239_consen   35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH  114 (228)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence            3444443335566666666666543     455666777777888888888888888888776432              


Q ss_pred             --hhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCC
Q 036661          272 --EALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGD  308 (615)
Q Consensus       272 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  308 (615)
                        .+-+-+..++++|...|+-||..++..+++.+.+.+.
T Consensus       115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence              2446678888888888888888888888888876554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.78  E-value=0.066  Score=41.36  Aligned_cols=141  Identities=12%  Similarity=0.088  Sum_probs=87.3

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 036661          435 CALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE  514 (615)
Q Consensus       435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  514 (615)
                      +.-.|..++..++..+....   .+..-++.++--....-+-+-..++++.+-+-|.+.|- .....++.+|...|.   
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~---   84 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK---   84 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc---
Confidence            34568888888888888763   23344444444444445556667777776654333221 123345555555543   


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          515 ALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       515 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                                  ........+.....+|.-++-.+++..+.+.+..+|..+..++.+|.+.|+..+|.++++++-++|++
T Consensus        85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence                        33455556677788899999999999998766566899999999999999999999999999999874

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.71  E-value=0.43  Score=43.06  Aligned_cols=194  Identities=18%  Similarity=0.163  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 036661          395 MVCNALIDMYSKCGSIGDARELFYALP-----EKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ-  468 (615)
Q Consensus       395 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-  468 (615)
                      ..+......+...+++..+...+....     ......+......+...+++..+...+.........+. ........ 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  138 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence            344444555555555555555554432     12333444455555555566666666666665422221 11112222 


Q ss_pred             HhhccCchHHHHHHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC--hhhHHHHHHHHHHh
Q 036661          469 ACTHAGFLEKGWGYFNLMTKVYQVNP----ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD--AGIWGTLLCACKIH  541 (615)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~~  541 (615)
                      .+...|+++.+...+.+...   ..|    ....+......+...++.++|...+.+.. ..+.  ...+..+...+...
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence            45566666666666666642   122    12223333333455666666666666654 2222  34555555566666


Q ss_pred             CChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          542 RNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       542 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      ++++.|...+.++....|.....+..++..+...|.++++...+.+.....
T Consensus       216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD  266 (291)
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            666666666666666666644555555555555555666666666555433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.079  Score=47.53  Aligned_cols=120  Identities=11%  Similarity=0.070  Sum_probs=69.7

Q ss_pred             HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHH---HHHHHHHhCChh
Q 036661          469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGT---LLCACKIHRNIE  545 (615)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~  545 (615)
                      .....|++.+|...|+.....  .+-+......++++|...|+.+.|..++..++.......+..   -+..+.+..+..
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            345567777777777776642  122234555677777777777777777777763322222222   223333333333


Q ss_pred             HHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          546 IGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       546 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      +.. .++..+..+|+|...-..++..|...|+.++|.+.+=.+..+
T Consensus       221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            222 234445567777777777777777777777777776655544

>PRK15331 chaperone protein SicA; Provisional

Probab=96.68  E-value=0.045  Score=44.68  Aligned_cols=98  Identities=10%  Similarity=0.033  Sum_probs=61.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 036661          431 MIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG  510 (615)
Q Consensus       431 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  510 (615)
                      ...-+...|++++|..+|+-+.-.+ .-|..-+..|..++-..+++++|+..|.....- . .-|+..+-..+.+|...|
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhC
Confidence            3344556778888888877777653 233444556666666777788888777766532 1 122333444677777778


Q ss_pred             ChHHHHHHHHhCCCCCChhhH
Q 036661          511 KLKEALDFVQSMPIKSDAGIW  531 (615)
Q Consensus       511 ~~~~A~~~~~~~~~~p~~~~~  531 (615)
                      +.+.|...|......|....+
T Consensus       120 ~~~~A~~~f~~a~~~~~~~~l  140 (165)
T PRK15331        120 KAAKARQCFELVNERTEDESL  140 (165)
T ss_pred             CHHHHHHHHHHHHhCcchHHH
Confidence            888888877777655544333

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.55  E-value=0.0055  Score=50.85  Aligned_cols=105  Identities=12%  Similarity=0.019  Sum_probs=64.1

Q ss_pred             HHHhhccCchHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHh
Q 036661          467 LQACTHAGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIH  541 (615)
Q Consensus       467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~  541 (615)
                      ..-+...|++++|..-|..+.....-.++   ...|..-+.++.+.+.++.|++-..+.. ..|. ...+.....+|-+.
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            44566778888888888877743211111   1245555566777777777777776665 4443 23444445566666


Q ss_pred             CChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661          542 RNIEIGEYVAYRLFELEPHSAAPYVEMANI  571 (615)
Q Consensus       542 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  571 (615)
                      ..+++|+.-|+++++.+|....+-...+.+
T Consensus       182 ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             hhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            777777777777777777755444444333

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.51  E-value=0.12  Score=51.76  Aligned_cols=160  Identities=17%  Similarity=0.118  Sum_probs=100.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH-----HHHHHHHHhh----ccCchHHHHHHHHHHHHhhCCCCChhH
Q 036661          429 TTMIAGCALNGEFVEALDLFHQMMELD-LRPNRV-----TFLAVLQACT----HAGFLEKGWGYFNLMTKVYQVNPELNH  498 (615)
Q Consensus       429 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~-----~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~  498 (615)
                      ..++....-.||-+.+++.+.+..+.+ +.-...     .|...+..+.    .....+.|.++++.+.+.   -|+...
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l  268 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL  268 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence            344444445566666666666655422 111111     1222222222    244677888888888854   366555


Q ss_pred             HHH-HHHHHHhcCChHHHHHHHHhCC------CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh-HHH
Q 036661          499 YSC-MADLLGRKGKLKEALDFVQSMP------IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE-MAN  570 (615)
Q Consensus       499 ~~~-l~~~~~~~g~~~~A~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~  570 (615)
                      |.. -++.+...|+.++|++.|++..      .+-....+-.++..+....++++|...+.++.+.+.-+...|.. .|-
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            543 3466777888888888888754      11123455667777888889999999999999877765555554 456


Q ss_pred             HHHccCCh-------HHHHHHHHHHHhc
Q 036661          571 IYALGGRW-------DGVANLRTMMKRN  591 (615)
Q Consensus       571 ~~~~~g~~-------~~A~~~~~~~~~~  591 (615)
                      +|...|+.       ++|.+++++..+-
T Consensus       349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  349 CLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            67788888       8888888887653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.46  E-value=0.039  Score=45.49  Aligned_cols=72  Identities=14%  Similarity=0.253  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHH----HhhCCCCChhHH
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMT----KVYQVNPELNHY  499 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~  499 (615)
                      +...++..+...|++++|..+++.+.... +-|...+..++.+|...|+...|.++|+++.    +..|+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            45566777788999999999999999874 4566789999999999999999999888775    356888887654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK11906 transcriptional regulator; Provisional

Probab=96.44  E-value=0.14  Score=49.42  Aligned_cols=145  Identities=12%  Similarity=0.044  Sum_probs=101.4

Q ss_pred             ChHHHHHHHhcCC---CCC---hHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 036661          409 SIGDARELFYALP---EKT---VVSWTTMIAGCALN---------GEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA  473 (615)
Q Consensus       409 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  473 (615)
                      ..+.|..+|.+..   +-+   ...|..+..++...         .+..+|.+..++..+.+ +-|+.....+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            3567888898877   433   45666666665432         23456777888888875 66778888888888888


Q ss_pred             CchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh---hHHHHHHHHHHhCChhHHH
Q 036661          474 GFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG---IWGTLLCACKIHRNIEIGE  548 (615)
Q Consensus       474 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~---~~~~l~~~~~~~~~~~~A~  548 (615)
                      ++++.|...|++..   .+.|+. ..|...+..+.-.|+.++|.+.+++.. ..|...   .....+..|.. .-.++|+
T Consensus       352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~  427 (458)
T PRK11906        352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI  427 (458)
T ss_pred             cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence            88999999999998   567774 566667777778899999999999954 666433   22333334443 4567777


Q ss_pred             HHHHHHhccC
Q 036661          549 YVAYRLFELE  558 (615)
Q Consensus       549 ~~~~~~~~~~  558 (615)
                      .+|-+-.+-+
T Consensus       428 ~~~~~~~~~~  437 (458)
T PRK11906        428 KLYYKETESE  437 (458)
T ss_pred             HHHhhccccc
Confidence            7776655433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.43  E-value=0.024  Score=51.78  Aligned_cols=124  Identities=15%  Similarity=0.088  Sum_probs=62.5

Q ss_pred             HHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CCC-C------h
Q 036661          465 AVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP-----IKS-D------A  528 (615)
Q Consensus       465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p-~------~  528 (615)
                      ++..++...+.++++++.|+.+.+-..-..|    ..++-.|...|.+..++++|.-+..++.     ... |      .
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            3444555555666666666665432111111    2355566666666666666655554432     110 1      1


Q ss_pred             hhHHHHHHHHHHhCChhHHHHHHHHHhccC------CCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661          529 GIWGTLLCACKIHRNIEIGEYVAYRLFELE------PHSAAPYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                      .....+.-+++..|..-+|.+.-+++.++.      |-.......++++|...|+.+.|..-|+..
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence            122233345556666666666666654432      112334445666666666666665555544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.41  E-value=0.027  Score=49.98  Aligned_cols=94  Identities=20%  Similarity=0.251  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHH
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSC  501 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~  501 (615)
                      .|+.-+..+ +.|++..|...|...++..  |+    ...+..|..++...|++++|..+|..+.++++-.|.. +.+-.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            455555543 5567888888888887752  22    2345567778888888888888888887765555543 66777


Q ss_pred             HHHHHHhcCChHHHHHHHHhCC
Q 036661          502 MADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      |+.+..+.|+.++|...|+++.
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~  242 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVI  242 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHH
Confidence            7788888888888888887775

>PRK11619 lytic murein transglycosylase; Provisional

Probab=96.37  E-value=1.6  Score=45.63  Aligned_cols=117  Identities=7%  Similarity=-0.058  Sum_probs=68.8

Q ss_pred             hcCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 036661          437 LNGEFVEALDLFHQMMELD-LRPNRV--TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLK  513 (615)
Q Consensus       437 ~~~~~~~a~~~~~~~~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  513 (615)
                      ...+.+.|...+....... +.+...  ....+.......+...++...++....   ...+......-++.-.+.++++
T Consensus       253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~  329 (644)
T PRK11619        253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRR  329 (644)
T ss_pred             HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHH
Confidence            3456788888888775432 333322  333343333333225566666665442   1234455555566666888888


Q ss_pred             HHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661          514 EALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE  556 (615)
Q Consensus       514 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  556 (615)
                      .+...+..|+  ..-...-..-++.++...|+.++|...|+++..
T Consensus       330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            8888888886  221222223355665667888888888888743

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.6  Score=40.68  Aligned_cols=45  Identities=7%  Similarity=0.067  Sum_probs=19.4

Q ss_pred             HHHhCChhHHHHHHHHHhcc----CCCCCCChHhHHHHHHccCChHHHHH
Q 036661          538 CKIHRNIEIGEYVAYRLFEL----EPHSAAPYVEMANIYALGGRWDGVAN  583 (615)
Q Consensus       538 ~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~  583 (615)
                      +....++..|+..++.-.++    .|++..+...|...| ..|+.+++.+
T Consensus       200 ~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k  248 (308)
T KOG1585|consen  200 YLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK  248 (308)
T ss_pred             HhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence            33344555555555543332    233344444444443 3444444433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.31  E-value=0.1  Score=41.64  Aligned_cols=115  Identities=13%  Similarity=0.071  Sum_probs=55.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 036661          432 IAGCALNGEFVEALDLFHQMMELDLRP---NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR  508 (615)
Q Consensus       432 ~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  508 (615)
                      .....+.|++++|.+.|+.+...- +.   ....-..++.+|.+.+++++|...+++.++-+.-.|++ -|.....++..
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~   94 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSY   94 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHH
Confidence            333445566666666666666541 11   12344445556666666666666666666443222322 12222233222


Q ss_pred             cCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661          509 KGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA  563 (615)
Q Consensus       509 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  563 (615)
                      ....+..   +..+.            ..-...+....|...|+++++.-|++..
T Consensus        95 ~~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   95 YEQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            2211111   11111            0001123366888999999999998643

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.23  E-value=0.01  Score=34.16  Aligned_cols=32  Identities=25%  Similarity=0.171  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                      .+..++..+...|++++|++.++++++++|++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            45566677777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.19  E-value=0.9  Score=40.89  Aligned_cols=196  Identities=19%  Similarity=0.122  Sum_probs=124.7

Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHhc-CCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh-HHHHHHHH-HH
Q 036661          361 TVLSMISGCGQSGALELGKWFDNYACSG-GLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--KTV-VSWTTMIA-GC  435 (615)
Q Consensus       361 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~-~~  435 (615)
                      .+......+...+....+...+...... ........+......+...+++..+.+.+.....  ++. ........ .+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL  140 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence            3334444444444444444444444331 2233344445555555566666666666665544  111 22222333 67


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcC
Q 036661          436 ALNGEFVEALDLFHQMMELDLRP----NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKG  510 (615)
Q Consensus       436 ~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g  510 (615)
                      ...|+++.+...+++....  .|    ....+......+...++.+.+...+......  .+. ....+..+...+...+
T Consensus       141 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         141 YELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcc
Confidence            7889999999999988653  33    2234444444567788999999999988843  223 3567777888888999


Q ss_pred             ChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          511 KLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       511 ~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      +++.|...+.... ..|+ ...+......+...+..+.+...+++.++..|.
T Consensus       217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9999999998886 4444 445555555555677899999999999999987

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.14  E-value=0.079  Score=41.80  Aligned_cols=52  Identities=10%  Similarity=0.218  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHH
Q 036661          455 DLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLL  506 (615)
Q Consensus       455 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  506 (615)
                      ...|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|+.-.
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            4568888888888899888999999999999988888877777888777533

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.05  E-value=0.066  Score=48.56  Aligned_cols=159  Identities=11%  Similarity=0.000  Sum_probs=116.5

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhH----HHHHHHHHHhcCCh
Q 036661          437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNH----YSCMADLLGRKGKL  512 (615)
Q Consensus       437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~  512 (615)
                      -+|+..+|...++++.+. .+.|...+...=.+|...|+.+.-...++++..  ...|+...    -..+..++..+|-+
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence            478888888899999886 455667787778899999999999999999885  33555433    33456677889999


Q ss_pred             HHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC----CCCChHhHHHHHHccCChHHHHHHHH
Q 036661          513 KEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH----SAAPYVEMANIYALGGRWDGVANLRT  586 (615)
Q Consensus       513 ~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~  586 (615)
                      ++|.+.-++..  .+.|.-........+...|+..++.+..++-...-..    -..-|-..+-.|...+.|+.|+++|+
T Consensus       192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            99999999987  3345445566667777889999999998876543222    12334455667788899999999998


Q ss_pred             HHHhcCcccCCc
Q 036661          587 MMKRNQVKKFPG  598 (615)
Q Consensus       587 ~~~~~~~~~~~~  598 (615)
                      +=.-....++.+
T Consensus       272 ~ei~k~l~k~Da  283 (491)
T KOG2610|consen  272 REIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHhhccch
Confidence            765555545443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.05  E-value=1.5  Score=42.03  Aligned_cols=81  Identities=7%  Similarity=0.124  Sum_probs=53.6

Q ss_pred             CCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHH
Q 036661           15 RSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTT   94 (615)
Q Consensus        15 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   94 (615)
                      .|+.+-+|-.||+-+..++..++..+.+++|..- .+.-+..|..-+..-....++..+..+|.+.+....  +...|..
T Consensus        38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~l  114 (660)
T COG5107          38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWML  114 (660)
T ss_pred             CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHH
Confidence            4455557888888888888888888888888651 222344566666666666777888888887777653  3555555


Q ss_pred             HHHH
Q 036661           95 MVDM   98 (615)
Q Consensus        95 l~~~   98 (615)
                      .+.-
T Consensus       115 Yl~Y  118 (660)
T COG5107         115 YLEY  118 (660)
T ss_pred             HHHH
Confidence            5543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.04  E-value=0.029  Score=53.80  Aligned_cols=61  Identities=11%  Similarity=0.095  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh----hHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661          497 NHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG----IWGTLLCACKIHRNIEIGEYVAYRLFEL  557 (615)
Q Consensus       497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~  557 (615)
                      ..+..++.+|.+.|++++|+..|++.. ..|+..    +|..+..+|...|+.++|+..+++++++
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344455555555555555555555543 344322    3555555555555555555555555554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.00  E-value=0.011  Score=34.05  Aligned_cols=31  Identities=23%  Similarity=0.084  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      +|..++.++...|++++|+..++++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            4566677777777777777777777777775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.97  E-value=0.73  Score=46.04  Aligned_cols=92  Identities=13%  Similarity=0.045  Sum_probs=63.0

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC----------C
Q 036661          495 ELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA----------P  564 (615)
Q Consensus       495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----------~  564 (615)
                      +.++...+...+.+...+.-|.++|.++..      ...++......+++.+|..+.++.-+.-|+---          -
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr  819 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR  819 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhcc------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence            445666667777778888889999999872      224566667789999999999988877765211          1


Q ss_pred             hHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          565 YVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      +...-.+|.+.|+-.||.++++++....
T Consensus       820 FeEAqkAfhkAGr~~EA~~vLeQLtnna  847 (1081)
T KOG1538|consen  820 FEEAQKAFHKAGRQREAVQVLEQLTNNA  847 (1081)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence            1223346667777777777777765433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.91  E-value=1.1  Score=39.62  Aligned_cols=59  Identities=12%  Similarity=0.043  Sum_probs=44.0

Q ss_pred             HHHHHHHHhCChhHHHHHHHHHhccCCCCCC---ChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          533 TLLCACKIHRNIEIGEYVAYRLFELEPHSAA---PYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       533 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      .++..|.+.|.+..|..-++.+++.-|+.+.   .+..+..+|.+.|..++|.+.-+-+...
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            3556678888888888888888887776544   4555677888899988888876655433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.85  E-value=0.58  Score=45.48  Aligned_cols=101  Identities=12%  Similarity=0.079  Sum_probs=69.6

Q ss_pred             HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChh--hHHHHHHHH
Q 036661          463 FLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAG--IWGTLLCAC  538 (615)
Q Consensus       463 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~--~~~~l~~~~  538 (615)
                      -..+..++.+.|+.++|++.++++.+.+...-...+...|+.+|...+.+.++..++.+..  .-|...  +|...+-..
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka  341 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA  341 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence            3456677788999999999999998754322234567789999999999999999999876  234333  333333222


Q ss_pred             HHhCC---------------hhHHHHHHHHHhccCCCCCC
Q 036661          539 KIHRN---------------IEIGEYVAYRLFELEPHSAA  563 (615)
Q Consensus       539 ~~~~~---------------~~~A~~~~~~~~~~~p~~~~  563 (615)
                      +..++               ...|.+.+.++++.||.-|.
T Consensus       342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~  381 (539)
T PF04184_consen  342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK  381 (539)
T ss_pred             HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence            22222               23467889999999988653

The molecular function of this protein is uncertain.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.85  E-value=0.17  Score=48.97  Aligned_cols=144  Identities=9%  Similarity=0.004  Sum_probs=77.3

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 036661          435 CALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE  514 (615)
Q Consensus       435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  514 (615)
                      .-+..++..-++.-++..+.  .|+..+...++ +-.......++.+++++..+...     ..+..- ......|..  
T Consensus       178 AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----~~lg~s-~~~~~~g~~--  246 (539)
T PF04184_consen  178 AWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----ASLGKS-QFLQHHGHF--  246 (539)
T ss_pred             HHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----Hhhchh-hhhhcccch--
Confidence            33555666667777777764  56654332222 22344557788888887764310     000000 000011111  


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC--CCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          515 ALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH--SAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       515 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                       .+.+.+-..+|-..+-..+..++.+.|+.++|++.++++++..|.  +..+...|+.+|...+.|.++..++.+--+
T Consensus       247 -~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  247 -WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             -hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence             111111111222334455666667777777777777777776654  345667777777777777777777777543

The molecular function of this protein is uncertain.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.76  E-value=1.3  Score=39.25  Aligned_cols=169  Identities=17%  Similarity=0.142  Sum_probs=111.1

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHhcCCCC------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHH
Q 036661          392 DNVMVCNALIDMYSKCGSIGDARELFYALPEK------TVVSWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNRVTFL  464 (615)
Q Consensus       392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~  464 (615)
                      |-...|+.-+ .-.+.|++++|.+.|+.+...      ...+--.++.++.+.++++.|+..+++..... -.||. .|.
T Consensus        33 p~~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~  110 (254)
T COG4105          33 PASELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYA  110 (254)
T ss_pred             CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHH
Confidence            4444555444 456789999999999998762      23466667788899999999999999998853 23333 333


Q ss_pred             HHHHHhh---c----cCch---HHHHHHHHHHHHhhCC---CCChhH------------HHHHHHHHHhcCChHHHHHHH
Q 036661          465 AVLQACT---H----AGFL---EKGWGYFNLMTKVYQV---NPELNH------------YSCMADLLGRKGKLKEALDFV  519 (615)
Q Consensus       465 ~l~~~~~---~----~~~~---~~a~~~~~~~~~~~~~---~~~~~~------------~~~l~~~~~~~g~~~~A~~~~  519 (615)
                      ..+.+++   .    ..|.   ..|..-|+.++.++.-   .||+..            =..+++.|.+.|.+..|..-+
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~  190 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF  190 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence            3333333   2    2233   3455556666654321   122211            114667789999999999999


Q ss_pred             HhCC-CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661          520 QSMP-IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA  562 (615)
Q Consensus       520 ~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  562 (615)
                      +++. .-|+    ...+..+..+|...|-.++|...-+-+-...|+++
T Consensus       191 ~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         191 EEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence            8887 2222    33566777899999999999887666666667754

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.70  E-value=0.78  Score=41.45  Aligned_cols=145  Identities=14%  Similarity=0.090  Sum_probs=86.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 036661          434 GCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLK  513 (615)
Q Consensus       434 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  513 (615)
                      .....|++.+|...|+...... +-+......+..+|...|+.+.|..++..+-.+ .-.........-+..+.+.....
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence            3456677777777777777652 223355666777777788888887777765422 00111111223345555555555


Q ss_pred             HHHHHHHhCCCCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCC--CCCCChHhHHHHHHccCChHH
Q 036661          514 EALDFVQSMPIKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEP--HSAAPYVEMANIYALGGRWDG  580 (615)
Q Consensus       514 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~  580 (615)
                      +...+-++.-..| |...-..+...+...|+.+.|...+-.+++.+-  ++..+-..+..++.-.|.-+.
T Consensus       221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp  290 (304)
T COG3118         221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP  290 (304)
T ss_pred             CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence            5555555554445 445556666777777888888877777776543  345666677777777664333

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.68  E-value=0.66  Score=37.78  Aligned_cols=126  Identities=9%  Similarity=0.066  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 036661          428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLG  507 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  507 (615)
                      ...++..+...+.+.....+++.+...+ ..+....+.++..|++.+ ..+..+.++.       ..+.......++.+.
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~   80 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE   80 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence            4456667777778888888888888776 356667788888887653 3444444442       122233444677777


Q ss_pred             hcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHh-CChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          508 RKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIH-RNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       508 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      +.+-++++.-++.++..      +...+..+... ++++.|.+++++     ++++..|..++..+.
T Consensus        81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l  136 (140)
T smart00299       81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL  136 (140)
T ss_pred             HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence            77888888888877652      22233333334 778888887776     234556666665554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=0.32  Score=44.32  Aligned_cols=175  Identities=12%  Similarity=0.080  Sum_probs=114.8

Q ss_pred             HHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHhhccCch
Q 036661          404 YSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLA----VLQACTHAGFL  476 (615)
Q Consensus       404 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~~~~  476 (615)
                      ....|+..+|...++++.+   .|..++.-.-.+|...|+.+.-...++++.-. ..|+.+.|..    +.-++...|-+
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            3456777888777777776   36677888888999999999888888888764 3455544333    34456789999


Q ss_pred             HHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC----hhhHHHHHHHHHHhCChhHHHH
Q 036661          477 EKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSD----AGIWGTLLCACKIHRNIEIGEY  549 (615)
Q Consensus       477 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~----~~~~~~l~~~~~~~~~~~~A~~  549 (615)
                      ++|.+.-++..   .+++. .=.-.+....+.-.|+..++.++..+-.  .+..    ...|-...-.+...+.++.|++
T Consensus       192 ~dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  192 DDAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             hhHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            99999988877   33443 3334457777888899999999998865  1111    1122233344556689999999


Q ss_pred             HHHHHh--ccCCCCCC---ChHhHHHHHHccCChHHHH
Q 036661          550 VAYRLF--ELEPHSAA---PYVEMANIYALGGRWDGVA  582 (615)
Q Consensus       550 ~~~~~~--~~~p~~~~---~~~~l~~~~~~~g~~~~A~  582 (615)
                      +|.+-+  +++.++..   .|..+-.+..+...|.+-.
T Consensus       269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld  306 (491)
T KOG2610|consen  269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLD  306 (491)
T ss_pred             HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHH
Confidence            998654  35555542   2333344444444454443

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.58  E-value=0.058  Score=47.66  Aligned_cols=111  Identities=8%  Similarity=0.081  Sum_probs=82.8

Q ss_pred             Ccchhhhhcc--CCCchhcHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc----------
Q 036661            5 SLPPRLNKIY--RSSTINQWNSQIREAVDK-----NEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKL----------   67 (615)
Q Consensus         5 ~~~~~~~~~~--~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------   67 (615)
                      .++..|...+  .++.. +|-..+..+.+.     +.++=....+..|++.|+.-|..+|+.||..+-+.          
T Consensus        52 ~~e~~F~aa~~~~RdK~-sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~  130 (406)
T KOG3941|consen   52 HVEKQFEAAEPEKRDKD-SFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK  130 (406)
T ss_pred             chhhhhhccCcccccHH-HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence            3456666666  55666 888888887664     56677778889999999999999999999887542          


Q ss_pred             ------CCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCC-hhHHHHhhccCC
Q 036661           68 ------SDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDR-LDCAYKLFDKMP  116 (615)
Q Consensus        68 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~  116 (615)
                            ...+-+..++++|...|+.||-.+-..|++++.+.+- ..+..++.-+|+
T Consensus       131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                  2335677888999999999998888888888888765 334555555554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.53  E-value=0.019  Score=33.64  Aligned_cols=26  Identities=12%  Similarity=0.229  Sum_probs=21.8

Q ss_pred             ChHhHHHHHHccCChHHHHHHHHHHH
Q 036661          564 PYVEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       564 ~~~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                      +|..||.+|.+.|+|++|++++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36789999999999999999999855

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.48  E-value=3.9  Score=42.67  Aligned_cols=174  Identities=10%  Similarity=0.030  Sum_probs=110.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH----HhcCCchhHhHHHHHHhhcCCCCChHHHHHHHH
Q 036661           22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKAC----AKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVD   97 (615)
Q Consensus        22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~   97 (615)
                      ...-|..+.+..-+.-|+.+-..-.     .+..+...+...|    .+.|++++|...|-+.+..- +|+     .++.
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~  405 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIK  405 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHH
Confidence            4467888889999999988766532     2445555555554    46799999988877765431 222     2344


Q ss_pred             HhhcCCChhHHHHhhccCCC---CCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHH
Q 036661           98 MYAKCDRLDCAYKLFDKMPD---RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLL  174 (615)
Q Consensus        98 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  174 (615)
                      -|........--.+++.+.+   .+...-..|+.+|.+.++.++-.+..+.-. .|..  ..-....+..|.+.+-.+.|
T Consensus       406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a  482 (933)
T KOG2114|consen  406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA  482 (933)
T ss_pred             HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence            45555555555555666554   245566788999999999888877766544 3322  11244566667777777777


Q ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcc
Q 036661          175 KSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIE  217 (615)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  217 (615)
                      ..+-.....     .......+   +-..+++++|.+++..++
T Consensus       483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence            666554432     22233333   345688999999999887

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.40  E-value=0.84  Score=43.48  Aligned_cols=165  Identities=11%  Similarity=0.070  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhc---cCchHHHHHHHHHHHHhhCCCCChhHHH
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELD---LRPNRVTFLAVLQACTH---AGFLEKGWGYFNLMTKVYQVNPELNHYS  500 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~  500 (615)
                      +...++-+|....+++..+++++.+....   +.-....-....-++.+   .|+.++|++++..+... .-.++++++.
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g  221 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG  221 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence            44456667999999999999999998742   11122223344556666   89999999999995543 5567778888


Q ss_pred             HHHHHHHh---------cCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCC-hh---HHHHHHHH----Hhc---cCC
Q 036661          501 CMADLLGR---------KGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRN-IE---IGEYVAYR----LFE---LEP  559 (615)
Q Consensus       501 ~l~~~~~~---------~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~-~~---~A~~~~~~----~~~---~~p  559 (615)
                      .+++.|-.         ....++|...|.+.- .+|+.-.-..++......|. ++   +..++.-+    +.+   .++
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~  301 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK  301 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence            77777642         224677888888764 45553322222222223332 22   22222211    111   112


Q ss_pred             -CCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          560 -HSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       560 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                       .+-..+..++.+..-.|++++|.+.+++|....
T Consensus       302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence             233455678899999999999999999998653

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.39  E-value=2  Score=41.73  Aligned_cols=151  Identities=13%  Similarity=0.016  Sum_probs=84.3

Q ss_pred             CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhccCchHHHHHHHHHHHHh-hCCCCChhH
Q 036661          423 KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP---NRVTFLAVLQACTHAGFLEKGWGYFNLMTKV-YQVNPELNH  498 (615)
Q Consensus       423 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~  498 (615)
                      ....+|..++..+.+.|.++.|...+.++...+..+   .+.....-+......|+..+|+..++...+. ..-..+...
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            345678888888899999999998888888743221   2334444455666778888888888887752 111111111


Q ss_pred             HHHHHHHHHhcCChHHHHHH-HHhCCCCCChhhHHHHHHHHHHh------CChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661          499 YSCMADLLGRKGKLKEALDF-VQSMPIKSDAGIWGTLLCACKIH------RNIEIGEYVAYRLFELEPHSAAPYVEMANI  571 (615)
Q Consensus       499 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  571 (615)
                      ...+...+..  ..+..... ........-..++..++.-+...      ++.+++...|+++.++.|.....|..++..
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            1111111000  00000000 00000000012233333333333      788999999999999999988888888887


Q ss_pred             HHcc
Q 036661          572 YALG  575 (615)
Q Consensus       572 ~~~~  575 (615)
                      +.+.
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            7654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.38  E-value=0.93  Score=45.59  Aligned_cols=23  Identities=17%  Similarity=0.072  Sum_probs=11.0

Q ss_pred             HHHHhhccCchHHHHHHHHHHHH
Q 036661          466 VLQACTHAGFLEKGWGYFNLMTK  488 (615)
Q Consensus       466 l~~~~~~~~~~~~a~~~~~~~~~  488 (615)
                      +...+...++|++|.+.|..+.+
T Consensus       311 l~w~~~~~~~w~~A~~~f~~L~~  333 (468)
T PF10300_consen  311 LAWCHMFQHDWEEAAEYFLRLLK  333 (468)
T ss_pred             HHHHHHHHchHHHHHHHHHHHHh
Confidence            33444444555555555555543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.37  E-value=0.47  Score=46.92  Aligned_cols=161  Identities=14%  Similarity=0.062  Sum_probs=109.2

Q ss_pred             HHHHHHhcCChhHHHHHHH--HHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcC
Q 036661           25 QIREAVDKNEAHKALLLFR--RMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKC  102 (615)
Q Consensus        25 ll~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (615)
                      ..+...-+++++++.+..+  ++.. .+  .....+.++.-+.+.|.++.|+++..         |+.   .-.....+.
T Consensus       267 ~fk~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~l  331 (443)
T PF04053_consen  267 EFKTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQL  331 (443)
T ss_dssp             HHHHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHC
T ss_pred             HHHHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhc
Confidence            4566777889999877775  2221 12  24457888899999999999998733         332   235566788


Q ss_pred             CChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036661          103 DRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGI  182 (615)
Q Consensus       103 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  182 (615)
                      |+++.|.++.++..  +...|..|.....+.|+++-|.+.|++...         |..++-.+...|+.+...++.+...
T Consensus       332 g~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~  400 (443)
T PF04053_consen  332 GNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE  400 (443)
T ss_dssp             T-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999998876  566999999999999999999999998765         4566667777888888887777766


Q ss_pred             HhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcc
Q 036661          183 HIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIE  217 (615)
Q Consensus       183 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  217 (615)
                      ..|      -++....++.-.|+.++..+++.+..
T Consensus       401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  401 ERG------DINIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             HTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             Hcc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            554      24555566666777777777766543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.35  E-value=0.044  Score=42.15  Aligned_cols=56  Identities=14%  Similarity=0.030  Sum_probs=52.1

Q ss_pred             HHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          536 CACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       536 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      -+....|+.+.|++.|.+++.+-|.++.+|++.+.+|.-+|+.++|++-+++.++-
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL  106 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL  106 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence            45667899999999999999999999999999999999999999999999998873

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.33  E-value=0.024  Score=35.07  Aligned_cols=33  Identities=18%  Similarity=0.151  Sum_probs=29.5

Q ss_pred             CCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          562 AAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       562 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      |..+..++.+|.+.|++++|+++++++.+..+.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~   33 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD   33 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            457889999999999999999999999987764

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.25  E-value=1.2  Score=37.50  Aligned_cols=128  Identities=9%  Similarity=-0.004  Sum_probs=77.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh----hHHHH
Q 036661          428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTF--LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL----NHYSC  501 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~  501 (615)
                      |..++.... .+.+ +.....+++....-......+  ..+...+...+++++|...++....   .+.|.    ..-..
T Consensus        57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lR  131 (207)
T COG2976          57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALR  131 (207)
T ss_pred             HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHH
Confidence            334444332 3333 455555666654211111222  2334567788889999888887763   22332    12334


Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCC-CChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          502 MADLLGRKGKLKEALDFVQSMPIK-SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      |.+.....|.+++|+..++....+ -........+..+...|+-++|+..|+++++.+++
T Consensus       132 LArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         132 LARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence            667788888999999888887611 12223344557778888888888888888887654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.13  E-value=0.48  Score=46.88  Aligned_cols=157  Identities=13%  Similarity=-0.018  Sum_probs=90.2

Q ss_pred             HHHHhcCChHHHHHHHh--cCCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHH
Q 036661          402 DMYSKCGSIGDARELFY--ALPE-KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEK  478 (615)
Q Consensus       402 ~~~~~~g~~~~A~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~  478 (615)
                      +...-.++++.+.++.+  ++.. -+....+.++.-+.+.|-++.|+.+.++-..            -.....+.|+++.
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~  336 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI  336 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred             HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence            33445677777555443  2211 1234466677777777777777765433221            1233456677777


Q ss_pred             HHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661          479 GWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELE  558 (615)
Q Consensus       479 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  558 (615)
                      |.++.+.       .++...|..|++...+.|+++-|.+.+.+..      -+..|.-.|...|+.+.-.++.+.+.+..
T Consensus       337 A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  337 ALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            7665432       2356678888888888888888888888866      34456666667788777777776665432


Q ss_pred             CCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661          559 PHSAAPYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       559 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                           -+.....++.-.|+.++..+++.+-
T Consensus       404 -----~~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  404 -----DINIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             -----CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence                 2445555666778888887777543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.12  E-value=0.15  Score=45.13  Aligned_cols=98  Identities=20%  Similarity=0.220  Sum_probs=74.6

Q ss_pred             HHHhhccCC--CCCchhHHHHHHHHHhc-----CChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcC-----------
Q 036661          108 AYKLFDKMP--DRDVASWNAMIVGFAQM-----GFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAK-----------  169 (615)
Q Consensus       108 a~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----------  169 (615)
                      .+..|....  ++|..+|-..+..|...     +.++-....++.|.+.|+.-|..+|..|++.+-+-.           
T Consensus        53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F  132 (406)
T KOG3941|consen   53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF  132 (406)
T ss_pred             hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence            345565555  57788888888877653     566777778889999999999999999998764332           


Q ss_pred             -----ChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCC
Q 036661          170 -----HLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCND  205 (615)
Q Consensus       170 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  205 (615)
                           .-+-+..++++|..+|+.||..+-..+++++.+.+-
T Consensus       133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence                 223467888899999999999888888888887664

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.00  E-value=3  Score=38.72  Aligned_cols=62  Identities=5%  Similarity=0.030  Sum_probs=27.2

Q ss_pred             HHHHHHHhcCChHHHHHHHhcCCCC---ChHHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCCCH
Q 036661          399 ALIDMYSKCGSIGDARELFYALPEK---TVVSWTTMIAGCA--LNGEFVEALDLFHQMMELDLRPNR  460 (615)
Q Consensus       399 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~  460 (615)
                      .-+..+.+.++.+.+.+.+.+|...   ....+..++..+.  .......+...+..+....+.|..
T Consensus       126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence            3344444455566665555555431   1123333333331  112334555555555544344443

It is also involved in sporulation [].

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=94.98  E-value=0.038  Score=31.76  Aligned_cols=31  Identities=16%  Similarity=0.035  Sum_probs=22.5

Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      +|..++..+...|++++|...++++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4556667777777777777777777777774

...

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.81  E-value=0.16  Score=40.46  Aligned_cols=53  Identities=11%  Similarity=0.003  Sum_probs=32.1

Q ss_pred             HhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          540 IHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      ..++.++++.++..+.-+.|+.+..-..-++++...|+|++|+.+++.+.+.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            35566666666666666666666666666666666666666666666655544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=94.76  E-value=0.065  Score=48.71  Aligned_cols=107  Identities=12%  Similarity=-0.006  Sum_probs=66.3

Q ss_pred             HHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCCh
Q 036661          468 QACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNI  544 (615)
Q Consensus       468 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~  544 (615)
                      .-|.++|.+++|+..|.+..   .+.| +..++..-+.+|.+..++..|..-...+.  ...-...|...+.+-...|+.
T Consensus       105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            34667777777777777666   3344 55555556667777777766665555544  111223455555555667899


Q ss_pred             hHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHH
Q 036661          545 EIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGV  581 (615)
Q Consensus       545 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  581 (615)
                      ++|.+-++.+++++|++-+    |-..|.+.....++
T Consensus       182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~  214 (536)
T KOG4648|consen  182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRER  214 (536)
T ss_pred             HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence            9999999999999998433    33444444444433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.72  E-value=0.16  Score=41.41  Aligned_cols=72  Identities=11%  Similarity=-0.071  Sum_probs=44.3

Q ss_pred             HhcCChHHHHHHHHhCC-CCCChhhH-HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCCh
Q 036661          507 GRKGKLKEALDFVQSMP-IKSDAGIW-GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRW  578 (615)
Q Consensus       507 ~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  578 (615)
                      .+.++.+++..++..+. ..|..... ..-+..+...|++.+|+.+++.+.+-.|..+.+-..++.++...|+.
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            45567777777776665 45544333 22334555667777777777777666666666666666666666653

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.60  E-value=1.9  Score=36.94  Aligned_cols=160  Identities=20%  Similarity=0.158  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 036661          425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMA  503 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  503 (615)
                      +..||-+.--+...|+++.|.+.|+...+.+  |.. .+...-.-++.-.|++.-|.+-+...-+.-.-.|-...|.-+.
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~  176 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN  176 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence            4577888877888888888888888888763  332 2322223344556788877766655543211122222221111


Q ss_pred             HHHHhcCChHHHHHHH-HhCCCCCChhhHHHHH-HHHHHhCChhHHHHHHHHHhccCCCC-------CCChHhHHHHHHc
Q 036661          504 DLLGRKGKLKEALDFV-QSMPIKSDAGIWGTLL-CACKIHRNIEIGEYVAYRLFELEPHS-------AAPYVEMANIYAL  574 (615)
Q Consensus       504 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~  574 (615)
                         .+.-++.+|..-+ ++.. ..+..-|...+ ..|.  |... -+.+++++..-..++       .++|+.|+.-|..
T Consensus       177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL--gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~  249 (297)
T COG4785         177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL--GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS  249 (297)
T ss_pred             ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH--hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence               2334556665444 3333 22333332222 2221  1111 012222222222222       4688899999999


Q ss_pred             cCChHHHHHHHHHHHhcCc
Q 036661          575 GGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       575 ~g~~~~A~~~~~~~~~~~~  593 (615)
                      .|+.++|..+|+.....++
T Consensus       250 ~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         250 LGDLDEATALFKLAVANNV  268 (297)
T ss_pred             cccHHHHHHHHHHHHHHhH
Confidence            9999999999988766554

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.58  E-value=0.41  Score=37.82  Aligned_cols=49  Identities=8%  Similarity=0.086  Sum_probs=29.7

Q ss_pred             CCCCHHHHHHHHHhhcccchhhHHHHHHHHHHh-cCCCCchHHHHHHHHH
Q 036661          355 EVPDLVTVLSMISGCGQSGALELGKWFDNYACS-GGLKDNVMVCNALIDM  403 (615)
Q Consensus       355 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~  403 (615)
                      ..|+..+..+++.+|+..+++..|.++++.+.+ .+++.+..++..|++-
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            456666666666666666666666666666554 4455555555555543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.48  E-value=0.27  Score=41.27  Aligned_cols=85  Identities=16%  Similarity=0.151  Sum_probs=38.3

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHh
Q 036661          435 CALNGEFVEALDLFHQMMELDLRPNRV-----TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGR  508 (615)
Q Consensus       435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~  508 (615)
                      +...|++++|..-|.+.++. +++...     .|..-..++.+.+.++.|+.-..+.+   .+.|+. .....-+.+|.+
T Consensus       105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHHHHh
Confidence            44555555555555555554 122211     22222334445555555554444444   223331 122233445555


Q ss_pred             cCChHHHHHHHHhCC
Q 036661          509 KGKLKEALDFVQSMP  523 (615)
Q Consensus       509 ~g~~~~A~~~~~~~~  523 (615)
                      ..++++|++-++++.
T Consensus       181 ~ek~eealeDyKki~  195 (271)
T KOG4234|consen  181 MEKYEEALEDYKKIL  195 (271)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            555555555555554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.21  E-value=1.7  Score=35.64  Aligned_cols=19  Identities=21%  Similarity=0.384  Sum_probs=9.4

Q ss_pred             HHHhcCChHHHHHHHHhCC
Q 036661          505 LLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       505 ~~~~~g~~~~A~~~~~~~~  523 (615)
                      .+.+.|++.+|..+|+++.
T Consensus        53 l~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen   53 LHIVRGDWDDALRLLRELE   71 (160)
T ss_pred             HHHHhCCHHHHHHHHHHHh
Confidence            3444455555555555544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.15  E-value=0.043  Score=31.47  Aligned_cols=31  Identities=6%  Similarity=0.061  Sum_probs=26.1

Q ss_pred             CChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          563 APYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ..|..+|.+|...|++++|++.+++..+..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            4678999999999999999999999886543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK09687 putative lyase; Provisional

Probab=94.11  E-value=4.9  Score=37.26  Aligned_cols=25  Identities=12%  Similarity=-0.213  Sum_probs=11.1

Q ss_pred             HHHHHHHhCChhHHHHHHHHHhccCC
Q 036661          534 LLCACKIHRNIEIGEYVAYRLFELEP  559 (615)
Q Consensus       534 l~~~~~~~~~~~~A~~~~~~~~~~~p  559 (615)
                      .+.+....|+. +|...++++.+.+|
T Consensus       241 a~~ALg~ig~~-~a~p~L~~l~~~~~  265 (280)
T PRK09687        241 IIEAAGELGDK-TLLPVLDTLLYKFD  265 (280)
T ss_pred             HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence            33344444442 35555555554444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.09  E-value=11  Score=41.27  Aligned_cols=114  Identities=15%  Similarity=0.065  Sum_probs=64.6

Q ss_pred             HHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 036661          403 MYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGY  482 (615)
Q Consensus       403 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  482 (615)
                      .--+.|-+.+|..++..-.+.-...|.+....+.....+++|.-.|+..-+.         .-.+.+|..+|+|.+|+.+
T Consensus       917 ~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~  987 (1265)
T KOG1920|consen  917 YIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSL  987 (1265)
T ss_pred             HHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHH
Confidence            3344455555555543322222334555555555666777776666554321         2345677777888888777


Q ss_pred             HHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 036661          483 FNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSD  527 (615)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~  527 (615)
                      ..++..  +-..-..+-..|+..+...++.-+|-++..+....|.
T Consensus       988 a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~ 1030 (1265)
T KOG1920|consen  988 AAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE 1030 (1265)
T ss_pred             HHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH
Confidence            776652  1111112235577777788888888888877764443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.05  E-value=2.9  Score=34.49  Aligned_cols=129  Identities=12%  Similarity=0.088  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh-HHH--H
Q 036661          426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV-TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN-HYS--C  501 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~--~  501 (615)
                      ..|..-+. +.+.+..++|+.-|.++.+.|...=+. ............|+...|...|+++-.+..+ |... -..  .
T Consensus        60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlr  137 (221)
T COG4649          60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLR  137 (221)
T ss_pred             HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHH
Confidence            34444444 356788899999999999877443222 2223344567889999999999998855222 2211 111  2


Q ss_pred             HHHHHHhcCChHHHHHHHHhCC--CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661          502 MADLLGRKGKLKEALDFVQSMP--IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFE  556 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~--~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  556 (615)
                      -..++...|.++......+.+.  .+| ....-..|.-+..+.|++.+|...|+.+..
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            2345667888888888887775  222 334556677777889999999999998876

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.05  E-value=2.7  Score=34.13  Aligned_cols=86  Identities=12%  Similarity=0.025  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhc
Q 036661           22 WNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAK  101 (615)
Q Consensus        22 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (615)
                      -..++..+...+.+.....+++.+...+. .++..++.++..|++... ......+..   .   .+..-....+..|.+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~   81 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence            35677777777888888888888877664 466677777777776532 222222221   1   122223334555555


Q ss_pred             CCChhHHHHhhccC
Q 036661          102 CDRLDCAYKLFDKM  115 (615)
Q Consensus       102 ~g~~~~a~~~~~~~  115 (615)
                      .+-++++.-++..+
T Consensus        82 ~~l~~~~~~l~~k~   95 (140)
T smart00299       82 AKLYEEAVELYKKD   95 (140)
T ss_pred             cCcHHHHHHHHHhh
Confidence            55555555554443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.05  E-value=2.5  Score=37.04  Aligned_cols=145  Identities=14%  Similarity=0.094  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCH---HHHHHHHHH
Q 036661          395 MVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDL--RPNR---VTFLAVLQA  469 (615)
Q Consensus       395 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~---~~~~~l~~~  469 (615)
                      ..|+--..+|..+|.++.|-..+++.-+            .....++++|++++++....=.  ..+.   ..+..+-+.
T Consensus        92 dl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~  159 (308)
T KOG1585|consen   92 DLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV  159 (308)
T ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence            3445555667777776665554443211            1234577778887777654210  1111   234445556


Q ss_pred             hhccCchHHHHHHHHHHHH---hhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHh---CC--CC-CChhhHHHHHHHHH
Q 036661          470 CTHAGFLEKGWGYFNLMTK---VYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQS---MP--IK-SDAGIWGTLLCACK  539 (615)
Q Consensus       470 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~---~~--~~-p~~~~~~~l~~~~~  539 (615)
                      +.+...+++|-..+.+-..   .+.--++. ..+-..+-.+.-..++..|...++.   ++  .. .+..+...|+.+| 
T Consensus       160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-  238 (308)
T KOG1585|consen  160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-  238 (308)
T ss_pred             hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence            6777777776655554321   11112222 2344555666677899999999988   33  22 2445677777776 


Q ss_pred             HhCChhHHHHHHH
Q 036661          540 IHRNIEIGEYVAY  552 (615)
Q Consensus       540 ~~~~~~~A~~~~~  552 (615)
                      ..|+.+++..++.
T Consensus       239 d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  239 DEGDIEEIKKVLS  251 (308)
T ss_pred             ccCCHHHHHHHHc
Confidence            5688888877654

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.88  E-value=2.2  Score=33.42  Aligned_cols=138  Identities=12%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             HhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhH---HHHHHHHHHhcCCH
Q 036661          233 CTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSV---INTLISMYSKCGDI  309 (615)
Q Consensus       233 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~  309 (615)
                      +.-.|.+++..++..+....   .+..-++.++--...   ......++..+.+-|-..|...   ...++..|...|. 
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiD---aa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~-   84 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIID---AADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNK-   84 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHH---H--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecch---hhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcc-
Confidence            34467777777777777654   333444444432211   1122333333333332222221   1223333333332 


Q ss_pred             HHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcC
Q 036661          310 DSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGG  389 (615)
Q Consensus       310 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  389 (615)
                                   +.......+.....+|.-+...+++.++... -.+++.....+..+|.+.|+..++.+++.+..+.|
T Consensus        85 -------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   85 -------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence                         2233455677788888888888888887753 36778888888888888888888888888888777


Q ss_pred             CC
Q 036661          390 LK  391 (615)
Q Consensus       390 ~~  391 (615)
                      ++
T Consensus       151 ~k  152 (161)
T PF09205_consen  151 LK  152 (161)
T ss_dssp             -H
T ss_pred             hH
Confidence            43

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.86  E-value=0.054  Score=31.12  Aligned_cols=31  Identities=13%  Similarity=0.174  Sum_probs=26.4

Q ss_pred             CChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          563 APYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      .+|..+|.+|...|++++|++.+++..+..+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            4688999999999999999999999887553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=93.81  E-value=0.1  Score=47.46  Aligned_cols=90  Identities=11%  Similarity=-0.017  Sum_probs=75.1

Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChH
Q 036661          502 MADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWD  579 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  579 (615)
                      -+.-|.++|++++|++++.+.. ..| ++..+.....+|.+...+..|+.-...++.++.....+|...+.+-...|+..
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence            3456889999999999998876 566 78888889999999999999999999999988877777888888878888888


Q ss_pred             HHHHHHHHHHhc
Q 036661          580 GVANLRTMMKRN  591 (615)
Q Consensus       580 ~A~~~~~~~~~~  591 (615)
                      +|.+-++..+..
T Consensus       183 EAKkD~E~vL~L  194 (536)
T KOG4648|consen  183 EAKKDCETVLAL  194 (536)
T ss_pred             HHHHhHHHHHhh
Confidence            888777766543

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=93.80  E-value=19  Score=42.90  Aligned_cols=309  Identities=10%  Similarity=0.052  Sum_probs=168.6

Q ss_pred             hccCchhhhhhhHHHHHHHHhcC--CCChhHHHHHHHHHHhcCCHHHHHHHHhc-cCCCCcccHHHHHHHHHhcCChhHH
Q 036661          267 SCVCPEALVQGRLVHSHGIHYGF--DLDVSVINTLISMYSKCGDIDSARFLFDG-MCDRTRVSWTAMISGYAQKGDLDEA  343 (615)
Q Consensus       267 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a  343 (615)
                      +-.+.+.+..|...++.-.....  ......+..+...|...+++|....+... ...++   ...-|......|++..|
T Consensus      1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADA 1468 (2382)
T ss_pred             HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHH
Confidence            44455666666666665311110  11223345555588888888887777663 33322   33345556678899999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHH-HHHHHHHhcCChHHHHHHHhcCCC
Q 036661          344 LRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCN-ALIDMYSKCGSIGDARELFYALPE  422 (615)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~  422 (615)
                      ...|+.+.+.+ ++...+++.++......|.++...-..+-..... .+....++ .-+.+-.+.++++.......   .
T Consensus      1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred             HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence            99999988764 3446677777777667777776666555443332 23333333 33444567777777666655   4


Q ss_pred             CChHHHHHH--HHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHH----------HH
Q 036661          423 KTVVSWTTM--IAGCALNG--EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLM----------TK  488 (615)
Q Consensus       423 ~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~  488 (615)
                      .+..+|...  +....+..  |.-.-....+.+.+.-+.|        +.++...|.+..+.++.-++          ..
T Consensus      1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred             ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455444  23333222  2222222334433321111        12222222222222222111          11


Q ss_pred             hhCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHhCC----CCC-----ChhhHHHHHHHHHHhCChhHHHHHHHH
Q 036661          489 VYQVNPEL------NHYSCMADLLGRKGKLKEALDFVQSMP----IKS-----DAGIWGTLLCACKIHRNIEIGEYVAYR  553 (615)
Q Consensus       489 ~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~  553 (615)
                      ..++.++.      ..|..-...-....+..+-+--+++..    .+|     -..+|...++.++..|.++.|...+-+
T Consensus      1616 l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~ 1695 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLN 1695 (2382)
T ss_pred             hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence            11333332      122221111111111222222222211    222     245788888999999999999999988


Q ss_pred             HhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          554 LFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       554 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +.+..+  +..+...+..+...|+...|+.++++-.+...
T Consensus      1696 A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1696 AKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             hhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            888774  68999999999999999999999998886543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.49  E-value=1.8  Score=36.49  Aligned_cols=91  Identities=9%  Similarity=-0.086  Sum_probs=68.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHhCCCCCChhhHH-----HHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661          501 CMADLLGRKGKLKEALDFVQSMPIKSDAGIWG-----TLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG  575 (615)
Q Consensus       501 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  575 (615)
                      .++..+...|++++|..-++.....|....+.     .+.......|.+++|...+....+-.= .+......|+++...
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k  172 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK  172 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence            35677889999999999999877455444443     344566778999999988776543211 123345679999999


Q ss_pred             CChHHHHHHHHHHHhcC
Q 036661          576 GRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       576 g~~~~A~~~~~~~~~~~  592 (615)
                      |+-++|+..|++.+..+
T Consensus       173 g~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         173 GDKQEARAAYEKALESD  189 (207)
T ss_pred             CchHHHHHHHHHHHHcc
Confidence            99999999999999887

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.47  E-value=14  Score=40.49  Aligned_cols=153  Identities=12%  Similarity=0.082  Sum_probs=87.8

Q ss_pred             CChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHhhccCchHHHHHHH
Q 036661          408 GSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLA----VLQACTHAGFLEKGWGYF  483 (615)
Q Consensus       408 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~~~~~~a~~~~  483 (615)
                      ++++.|+.-+.++..   ..|.-.+..-.+.|-+.+|+.+        ..|+...+..    ...-+...+.+++|.-.|
T Consensus       894 ~ry~~AL~hLs~~~~---~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y  962 (1265)
T KOG1920|consen  894 KRYEDALSHLSECGE---TYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADHLREELMSDEAALMY  962 (1265)
T ss_pred             HHHHHHHHHHHHcCc---cccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            345555554444431   1222233333344445555443        3455544443    444455667777777777


Q ss_pred             HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhH--HHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          484 NLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIW--GTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                      +..-+          ....+.+|..+|++.+|+.+..++....+....  ..|...+..+++.-+|-++.++...-    
T Consensus       963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---- 1028 (1265)
T KOG1920|consen  963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---- 1028 (1265)
T ss_pred             HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----
Confidence            66542          233567788889999999888887744443332  56777777888888777777666531    


Q ss_pred             CCChHhHHHHHHccCChHHHHHHHHHH
Q 036661          562 AAPYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       562 ~~~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                         .......|++...|++|+.+-...
T Consensus      1029 ---~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ---PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             ---HHHHHHHHhhHhHHHHHHHHHHhc
Confidence               223445566666777776665443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.44  E-value=4  Score=34.01  Aligned_cols=57  Identities=14%  Similarity=0.069  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661          296 INTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEA  352 (615)
Q Consensus       296 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  352 (615)
                      +..+++.+...|++-+|.++.+....-+......++.+-.+.+|...=..+++-..+
T Consensus        92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445566667777777777777665444445555566666666665544444444443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.31  E-value=1.9  Score=35.54  Aligned_cols=128  Identities=14%  Similarity=0.038  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHH---H-
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGT---L-  534 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~---l-  534 (615)
                      ..|...+. +.+.+..++|+.-|..+.+. |...-+ -............|+..+|...|.++. ..|.+...+.   + 
T Consensus        60 d~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr  137 (221)
T COG4649          60 DAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR  137 (221)
T ss_pred             HHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence            45554444 45678899999999999864 433222 122335567788999999999999986 3333333322   2 


Q ss_pred             -HHHHHHhCChhHHHHHHHHHh-ccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          535 -LCACKIHRNIEIGEYVAYRLF-ELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       535 -~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                       ...+...|-+++...-.+.+- +-+|-....-..|+-+-.+.|++.+|...|+.+..
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence             233456888888777666553 34565556677889999999999999999999876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.30  E-value=12  Score=39.25  Aligned_cols=54  Identities=11%  Similarity=0.172  Sum_probs=36.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661          501 CMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLF  555 (615)
Q Consensus       501 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  555 (615)
                      .++..+....+.+.+..+.+.... .++..|..++..+.+.+..+.-.+...+.+
T Consensus       710 dl~~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl  763 (933)
T KOG2114|consen  710 DLMLYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVYKVL  763 (933)
T ss_pred             HHHHHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence            355666677777777777777762 266778778887777776665555555544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.29  E-value=0.07  Score=48.67  Aligned_cols=88  Identities=15%  Similarity=0.120  Sum_probs=64.1

Q ss_pred             hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHH
Q 036661          508 RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLR  585 (615)
Q Consensus       508 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  585 (615)
                      ..|.+++|++.|....  .+|....+..-.+++.+.+....|++-+..+++++|+....|-..+.+..-.|+|++|...+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl  205 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL  205 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence            4566777777776665  33344455556667777778888888888888888888888888888888888888888888


Q ss_pred             HHHHhcCccc
Q 036661          586 TMMKRNQVKK  595 (615)
Q Consensus       586 ~~~~~~~~~~  595 (615)
                      ....+.++..
T Consensus       206 ~~a~kld~dE  215 (377)
T KOG1308|consen  206 ALACKLDYDE  215 (377)
T ss_pred             HHHHhccccH
Confidence            8777766643

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.25  E-value=0.13  Score=30.03  Aligned_cols=27  Identities=11%  Similarity=-0.050  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661          531 WGTLLCACKIHRNIEIGEYVAYRLFEL  557 (615)
Q Consensus       531 ~~~l~~~~~~~~~~~~A~~~~~~~~~~  557 (615)
                      +..++..|.+.|++++|+.++++++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566777888888888888888885543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=93.18  E-value=0.18  Score=43.58  Aligned_cols=82  Identities=11%  Similarity=0.068  Sum_probs=55.6

Q ss_pred             cCChHHHHHHHHhCC-CCCCh-hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHH
Q 036661          509 KGKLKEALDFVQSMP-IKSDA-GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRT  586 (615)
Q Consensus       509 ~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  586 (615)
                      ..+++.|+..+.+.. ..|.. ..|..-+.++.+..+++.+..--.+++++.|+.....+.++..+.....+++|+..++
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq  102 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ  102 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            345556666665554 55555 3445556666667777777777777777777777777777777777777777777777


Q ss_pred             HHHh
Q 036661          587 MMKR  590 (615)
Q Consensus       587 ~~~~  590 (615)
                      +..+
T Consensus       103 ra~s  106 (284)
T KOG4642|consen  103 RAYS  106 (284)
T ss_pred             HHHH
Confidence            7643

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=93.00  E-value=0.11  Score=43.05  Aligned_cols=108  Identities=9%  Similarity=0.004  Sum_probs=50.6

Q ss_pred             hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc---CChHHHHHH-------HHhCC-CCCC-hhhHHHHHHHHHHhC-
Q 036661          476 LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK---GKLKEALDF-------VQSMP-IKSD-AGIWGTLLCACKIHR-  542 (615)
Q Consensus       476 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~-------~~~~~-~~p~-~~~~~~l~~~~~~~~-  542 (615)
                      ++.|.+.++.....  -+.|...++.-+.++...   .+..++.++       |+++. ..|+ ..++..++.++...+ 
T Consensus         7 FE~ark~aea~y~~--nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAK--NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            44555555554322  234455555544444433   222333333       33333 4554 346666666654422 


Q ss_pred             ----------ChhHHHHHHHHHhccCCCCCCChHhHHHHHHc-cCChHHHHHHHHHHHhcCc
Q 036661          543 ----------NIEIGEYVAYRLFELEPHSAAPYVEMANIYAL-GGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       543 ----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~  593 (615)
                                .+++|...|+++.+.+|+|        .+|.+ .+...+|-++..++.+++.
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~n--------e~Y~ksLe~~~kap~lh~e~~~~~~  138 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVDEDPNN--------ELYRKSLEMAAKAPELHMEIHKQGL  138 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHhhHHHHHHHHHHHh
Confidence                      2555666666667777774        34432 2344555555555555443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.95  E-value=3.1  Score=34.62  Aligned_cols=135  Identities=11%  Similarity=0.108  Sum_probs=86.5

Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCC--ChhHHHHhhccC
Q 036661           38 ALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCD--RLDCAYKLFDKM  115 (615)
Q Consensus        38 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~  115 (615)
                      ..++++.+.+.+++|+...+..++..+.+.|.+....++    +..++-+|.......+-.+....  -..-+.+++.++
T Consensus        13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL   88 (167)
T PF07035_consen   13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL   88 (167)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence            356777778889999999999999999999987655444    33444444443333332222211  133455555554


Q ss_pred             CCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 036661          116 PDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHI  184 (615)
Q Consensus       116 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  184 (615)
                      .    ..+..++..+...|++-+|+++......    .+......++.+....+|...--.+++...+.
T Consensus        89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   89 G----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             h----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3    2577888899999999999998877532    22233456677777777776666666666554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=92.88  E-value=0.083  Score=29.95  Aligned_cols=28  Identities=14%  Similarity=0.173  Sum_probs=15.3

Q ss_pred             hHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          565 YVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      +..+|.+|.+.|++++|.+.++++.+..
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            3445555555555555555555555443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.85  E-value=8.3  Score=36.10  Aligned_cols=162  Identities=14%  Similarity=0.077  Sum_probs=81.2

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCC---CHHHHHHHHHhhcccchhhHHHHHHHHHHhcC-----CCCchHH
Q 036661          326 SWTAMISGYAQKGDLDEALRLFFAMEAA-GEVP---DLVTVLSMISGCGQSGALELGKWFDNYACSGG-----LKDNVMV  396 (615)
Q Consensus       326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~  396 (615)
                      .|..+.+++-+.-++.+++.+-+.-... |..|   -.....++-.++...+.++++.+.|+...+..     ......+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            3444555555555555555544433221 2222   11223345556666677777777777665521     1122356


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCC-------CChH------HHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC
Q 036661          397 CNALIDMYSKCGSIGDARELFYALPE-------KTVV------SWTTMIAGCALNGEFVEALDLFHQMME----LDLRPN  459 (615)
Q Consensus       397 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~  459 (615)
                      +..|...|.+..|+++|.-+..+..+       .|..      ....+..++...|....|.+.-++..+    .|-+|.
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            66777777777777665544332221       2221      122233445555666666555555433    332222


Q ss_pred             H-HHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661          460 R-VTFLAVLQACTHAGFLEKGWGYFNLMT  487 (615)
Q Consensus       460 ~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  487 (615)
                      . .....+.+.|...|+.+.|+.-|+.+.
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            2 244455566666777766666655544

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=92.72  E-value=2.2  Score=41.19  Aligned_cols=131  Identities=14%  Similarity=0.179  Sum_probs=81.8

Q ss_pred             HHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC
Q 036661          433 AGCALNGEFVEALDLFHQMMEL-DLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGK  511 (615)
Q Consensus       433 ~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  511 (615)
                      .-....|+...|-+-+...... .-.|+....  ....+...|+++.+...+....+  -+.....+...+++...+.|+
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r  372 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLAR  372 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhh
Confidence            3344567777776655544443 223443333  23345677888888887777664  233445567778888888888


Q ss_pred             hHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh
Q 036661          512 LKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE  567 (615)
Q Consensus       512 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  567 (615)
                      +++|...-.-|.  .-.++.............|-++++...+++++.++|.....|+.
T Consensus       373 ~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~  430 (831)
T PRK15180        373 WREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN  430 (831)
T ss_pred             HHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence            888888887776  22233344434444556678888888888888888765444444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.70  E-value=2.1  Score=36.37  Aligned_cols=96  Identities=14%  Similarity=0.056  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCCh--hHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHH-
Q 036661          122 SWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADF--VTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWIS-  198 (615)
Q Consensus       122 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-  198 (615)
                      .+..+...|.+.|+.+.|++.|.++.+....|..  ..+..+++.....+++..+..........--.+.......-+. 
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            4556666666667777777776666665433332  2345566666666666666666555544322211111111111 


Q ss_pred             ----HHHccCCHHHHHHHHHhcc
Q 036661          199 ----AYAKCNDLKMAELVFRGIE  217 (615)
Q Consensus       199 ----~~~~~~~~~~A~~~~~~~~  217 (615)
                          .+...+++..|-+.|-...
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccC
Confidence                1234577877777776665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.63  E-value=0.13  Score=27.39  Aligned_cols=24  Identities=17%  Similarity=0.116  Sum_probs=19.2

Q ss_pred             CChHhHHHHHHccCChHHHHHHHH
Q 036661          563 APYVEMANIYALGGRWDGVANLRT  586 (615)
Q Consensus       563 ~~~~~l~~~~~~~g~~~~A~~~~~  586 (615)
                      .....++.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            456778888888888888888775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.60  E-value=0.43  Score=41.48  Aligned_cols=59  Identities=7%  Similarity=-0.161  Sum_probs=34.9

Q ss_pred             HHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          534 LLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      +..++...|++-++++.-..++...|+|..+|+..+.+....=+.++|..-+.++++..
T Consensus       236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld  294 (329)
T KOG0545|consen  236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD  294 (329)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence            33444455666666666666666666666666666666666666666666665555443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=92.48  E-value=0.22  Score=28.12  Aligned_cols=31  Identities=16%  Similarity=-0.037  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          531 WGTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       531 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                      +..++.++.+.|+.++|.+.++++++..|++
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            4456777888899999999999999988874

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.42  E-value=5.9  Score=34.62  Aligned_cols=99  Identities=12%  Similarity=0.126  Sum_probs=53.8

Q ss_pred             HHHHhhcc-CchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC--hhhH---HHH
Q 036661          466 VLQACTHA-GFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD--AGIW---GTL  534 (615)
Q Consensus       466 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~--~~~~---~~l  534 (615)
                      +...|... .+++.|+..|+..-+-+.-...    ...+...+..-...+++.+|+++|+++. ...+  ..-|   ..+
T Consensus       119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf  198 (288)
T KOG1586|consen  119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF  198 (288)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence            33344333 4566666666665532221111    1233344445566788889999988875 1111  1111   111


Q ss_pred             H--HHH-HHhCChhHHHHHHHHHhccCCCCCCC
Q 036661          535 L--CAC-KIHRNIEIGEYVAYRLFELEPHSAAP  564 (615)
Q Consensus       535 ~--~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~  564 (615)
                      +  ..| .-..+.-.+...+++..+++|.-..+
T Consensus       199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            1  223 23467788888899999999975443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.41  E-value=13  Score=37.40  Aligned_cols=126  Identities=11%  Similarity=0.081  Sum_probs=87.2

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHh
Q 036661           21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPN-NLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMY   99 (615)
Q Consensus        21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~   99 (615)
                      .|..+|..--.....+.+...+..+...  .|- -.-|......=.+.|..+.+..+|++.+. +++.+...|...+..+
T Consensus        47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~  123 (577)
T KOG1258|consen   47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL  123 (577)
T ss_pred             chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence            5666666655555566666677777653  233 22445555555677888999999998875 4567777777766655


Q ss_pred             hc-CCChhHHHHhhccCCC------CCchhHHHHHHHHHhcCChHHHHHHHHHhHHc
Q 036661          100 AK-CDRLDCAYKLFDKMPD------RDVASWNAMIVGFAQMGFLEKVLCLFYNMRLV  149 (615)
Q Consensus       100 ~~-~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  149 (615)
                      .. .|+.+...+.|+....      .+...|...|..-..++++.....+++...+.
T Consensus       124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei  180 (577)
T KOG1258|consen  124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI  180 (577)
T ss_pred             hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            44 4777777777777653      34567888888888888899999999988874

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.33  E-value=3.7  Score=34.92  Aligned_cols=97  Identities=12%  Similarity=0.104  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHH--HH
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR--VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYS--CM  502 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l  502 (615)
                      .+..+...|.+.|+.+.|++.+.++.+....|..  ..+..+++.....+++..+...+.++........+...-+  ..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            4556666777777777777777777665444443  2455666666677777777777666654322111111111  11


Q ss_pred             --HHHHHhcCChHHHHHHHHhCC
Q 036661          503 --ADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       503 --~~~~~~~g~~~~A~~~~~~~~  523 (615)
                        +-.+...|++.+|.+.|-...
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccC
Confidence              122345678888877776665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.28  E-value=7.2  Score=37.77  Aligned_cols=67  Identities=16%  Similarity=0.232  Sum_probs=56.9

Q ss_pred             ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC----CCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH----SAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ...+|..++..+++.|+++.|...+.++...++.    .+.+....+.++...|+..+|...++...+...
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~  215 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL  215 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            4557888999999999999999999999986632    467788889999999999999999998887333

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.19  E-value=0.52  Score=42.82  Aligned_cols=61  Identities=20%  Similarity=0.226  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ++..++..+...|+.+.+...++++++.+|-+-..|..+..+|.+.|+...|+..|+++.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            3444555556666677777777777777776666777777777777777777777666654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.07  E-value=19  Score=38.33  Aligned_cols=219  Identities=12%  Similarity=-0.021  Sum_probs=116.5

Q ss_pred             cccchhhHHHHHHHHHHhcCCCCc----hH---HHHHH-HHHHHhcCChHHHHHHHhcCCC--------CChHHHHHHHH
Q 036661          370 GQSGALELGKWFDNYACSGGLKDN----VM---VCNAL-IDMYSKCGSIGDARELFYALPE--------KTVVSWTTMIA  433 (615)
Q Consensus       370 ~~~~~~~~a~~~~~~~~~~~~~~~----~~---~~~~l-~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~  433 (615)
                      ....++.+|..++.++...-..|+    ..   .++.| .......|+++.|.++-+....        ..+..+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            345677777777777655322221    11   22222 1223456788888777665433        35567788888


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHH--HHHhhccCc--hHHHHHHHHHHHHhhCCCCCh-----hHHHH
Q 036661          434 GCALNGEFVEALDLFHQMMELDLRPNRV---TFLAV--LQACTHAGF--LEKGWGYFNLMTKVYQVNPEL-----NHYSC  501 (615)
Q Consensus       434 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l--~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~-----~~~~~  501 (615)
                      +..-.|++++|..+.++..+..-.-+..   .|..+  ...+..+|.  +.+....+......+......     .++..
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~  585 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ  585 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence            8888999999998887776542222322   22222  224556673  333444444444332222222     33444


Q ss_pred             HHHHHHhc-CChHHHHHHHHhCC-CCCC--hhhHH--HHHHHHHHhCChhHHHHHHHHHhccCCCC--CCChHh---H--
Q 036661          502 MADLLGRK-GKLKEALDFVQSMP-IKSD--AGIWG--TLLCACKIHRNIEIGEYVAYRLFELEPHS--AAPYVE---M--  568 (615)
Q Consensus       502 l~~~~~~~-g~~~~A~~~~~~~~-~~p~--~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~---l--  568 (615)
                      +..++.+. +...+|..-++--. ..|.  .....  .++......|+.++|...+.++..+--++  ...|..   .  
T Consensus       586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~  665 (894)
T COG2909         586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK  665 (894)
T ss_pred             HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence            44555541 22222222222221 2222  22222  56677778999999999988887644332  222221   1  


Q ss_pred             HHHHHccCChHHHHHHHHHH
Q 036661          569 ANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       569 ~~~~~~~g~~~~A~~~~~~~  588 (615)
                      ......+|+.++|.....+-
T Consensus       666 ~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         666 LILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHhcccCCHHHHHHHHHhc
Confidence            22234678888888877663

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.06  E-value=0.2  Score=28.63  Aligned_cols=30  Identities=13%  Similarity=0.230  Sum_probs=26.4

Q ss_pred             CChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          563 APYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      .+|..++.+|...|++++|.+.|++..+-.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            468899999999999999999999987643

...

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.78  E-value=8.6  Score=34.86  Aligned_cols=61  Identities=13%  Similarity=-0.002  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      .+......|...|.+.+|.++-++++.++|-+...+..+..+|...|+--.|.+.++++.+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            3444557788899999999999999999999999999999999999998888888888754

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.56  E-value=2.2  Score=38.87  Aligned_cols=79  Identities=13%  Similarity=0.225  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH----hhCCCCChhHHHH
Q 036661          426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTK----VYQVNPELNHYSC  501 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~  501 (615)
                      .++..++..+...++.+.+.+.++++.... +-+...|..++.+|...|+...|+..|+.+.+    +.|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            345666777777778888888888887763 44667788888888888888888877777654    3466666655544


Q ss_pred             HHHH
Q 036661          502 MADL  505 (615)
Q Consensus       502 l~~~  505 (615)
                      +.+.
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.32  E-value=0.38  Score=30.93  Aligned_cols=36  Identities=17%  Similarity=0.055  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH
Q 036661          531 WGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV  566 (615)
Q Consensus       531 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  566 (615)
                      +-.+.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            345667788999999999999999999999765443

>PRK10941 hypothetical protein; Provisional

Probab=91.19  E-value=0.79  Score=41.77  Aligned_cols=63  Identities=14%  Similarity=0.068  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          531 WGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       531 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      .+.+-.++.+.++++.|.+..+.++.+.|+++.-+.-.|-+|.+.|.+..|..-++...++.+
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P  246 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP  246 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence            345556778888888888888888888888888888888888888888888888888877665

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.16  E-value=4.6  Score=37.67  Aligned_cols=92  Identities=9%  Similarity=0.114  Sum_probs=47.6

Q ss_pred             HHHHHHHHhcccCCC-----CcchHHHHHHHHhcCCC----hhhHHHHHHHHHHCCCCCCHH--hHHHHHHhccCchh--
Q 036661          207 KMAELVFRGIEEGLR-----TVVSWNSIIGGCTYGDK----FDDSLNFYRHMIYDGFRPDVT--TVVSLLSSCVCPEA--  273 (615)
Q Consensus       207 ~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--  273 (615)
                      ..|..+|+.|.+..|     +...+..++..  ..++    .+.+...|+.+...|...+..  ....++..+.....  
T Consensus       120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~  197 (297)
T PF13170_consen  120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK  197 (297)
T ss_pred             HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence            355666666665533     22333333322  2222    345566677777766654433  33334433333222  


Q ss_pred             hhhhhHHHHHHHHhcCCCChhHHHHHH
Q 036661          274 LVQGRLVHSHGIHYGFDLDVSVINTLI  300 (615)
Q Consensus       274 ~~~a~~~~~~~~~~~~~~~~~~~~~l~  300 (615)
                      ...+..+++.+.+.|+++....|..+.
T Consensus       198 v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  198 VARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHcCCccccccccHHH
Confidence            346677777777777777666655443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=91.12  E-value=29  Score=38.67  Aligned_cols=256  Identities=10%  Similarity=-0.078  Sum_probs=130.3

Q ss_pred             HHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCC
Q 036661          313 RFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKD  392 (615)
Q Consensus       313 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  392 (615)
                      ..+...+..++...-...+..+.+.+.. .+...+.....   .++...-...+.++...+........+..+..   .+
T Consensus       624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~  696 (897)
T PRK13800        624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP  696 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence            3444445566666666666666666543 34444444442   23433333444444333221111122222222   24


Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 036661          393 NVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH  472 (615)
Q Consensus       393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  472 (615)
                      +..+-...+..+...+.. ....+...+..+|...-...+.++...+..+.    +..+..   .++...-.....++..
T Consensus       697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~  768 (897)
T PRK13800        697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLAT  768 (897)
T ss_pred             CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHH
Confidence            445555555555543321 12234455556777666666666666554322    222222   5555555555666666


Q ss_pred             cCchHH-HHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHH
Q 036661          473 AGFLEK-GWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVA  551 (615)
Q Consensus       473 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~  551 (615)
                      .+..+. +...+..+.+    .++..+-...+.++.+.|..+.+...+..+...++...-...+.++...+. +++...+
T Consensus       769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L  843 (897)
T PRK13800        769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL  843 (897)
T ss_pred             hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence            554332 3344444443    355666667777777777765554555555545565555556666666554 3455555


Q ss_pred             HHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          552 YRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       552 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ..+++ +|+ ..+-...+.++.+.+.-.++...+.++.+
T Consensus       844 ~~~L~-D~~-~~VR~~A~~aL~~~~~~~~a~~~L~~al~  880 (897)
T PRK13800        844 VEALT-DPH-LDVRKAAVLALTRWPGDPAARDALTTALT  880 (897)
T ss_pred             HHHhc-CCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence            55553 332 45555666666665334456666666554

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.72  E-value=0.042  Score=45.10  Aligned_cols=52  Identities=12%  Similarity=-0.021  Sum_probs=21.8

Q ss_pred             HHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHH
Q 036661          127 IVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVH  178 (615)
Q Consensus       127 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  178 (615)
                      +..+.+.+.++....+++.+...+...+....+.++..+++.+..+...+.+
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L   65 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL   65 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence            3334444444444444444444333333444444444444444434443333

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.58  E-value=3.9  Score=35.01  Aligned_cols=75  Identities=19%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             HhcCChHHHHHHHHhCCCCC--ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC----CCCChHhHHHHHHccCChHH
Q 036661          507 GRKGKLKEALDFVQSMPIKS--DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH----SAAPYVEMANIYALGGRWDG  580 (615)
Q Consensus       507 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~  580 (615)
                      .+.|+ ++|.+.|-.+...|  +...+...+..|....|.+++++++-+++++.+.    |+..+.+|+.+|.+.|+++.
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            34455 77888887776333  3334444445556678999999999999987643    58899999999999999998


Q ss_pred             HH
Q 036661          581 VA  582 (615)
Q Consensus       581 A~  582 (615)
                      |-
T Consensus       197 AY  198 (203)
T PF11207_consen  197 AY  198 (203)
T ss_pred             hh
Confidence            74

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=90.57  E-value=2  Score=41.50  Aligned_cols=135  Identities=13%  Similarity=0.098  Sum_probs=83.2

Q ss_pred             HHHHHhcCChHHHHH-HHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchH
Q 036661          401 IDMYSKCGSIGDARE-LFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLE  477 (615)
Q Consensus       401 ~~~~~~~g~~~~A~~-~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~  477 (615)
                      +.--...|+.-.|-+ ++..+..  .++.........+...|+++.+...+...... +.....+...+++.....|+++
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~  374 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR  374 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence            333445677665543 3433332  23333333344456779999998888776654 3455677888888889999999


Q ss_pred             HHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 036661          478 KGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC  538 (615)
Q Consensus       478 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~  538 (615)
                      +|..+-.-|... .+ -+.++....+-.--..|-++++.-.+++..  .+|....|...+...
T Consensus       375 ~a~s~a~~~l~~-ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~  435 (831)
T PRK15180        375 EALSTAEMMLSN-EI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSST  435 (831)
T ss_pred             HHHHHHHHHhcc-cc-CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccc
Confidence            999988888743 22 223322222222334577888988888875  556666666666543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.52  E-value=0.37  Score=29.08  Aligned_cols=27  Identities=22%  Similarity=0.330  Sum_probs=21.7

Q ss_pred             ChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          564 PYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       564 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ++..++.+|...|++++|.+++++..+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            567888889999999999998888765

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.40  E-value=2.3  Score=33.40  Aligned_cols=72  Identities=13%  Similarity=0.029  Sum_probs=47.0

Q ss_pred             CCChhHHHHHHHHHHhcCChH---HHHHHHHhCC--CCC--ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661          493 NPELNHYSCMADLLGRKGKLK---EALDFVQSMP--IKS--DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP  564 (615)
Q Consensus       493 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  564 (615)
                      .++..+--.++.++.+..+.+   +.+.+++++.  ..|  +......|.-++.+.++++.++++...+++.+|+|+++
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            455555555666666655433   3455555554  223  23355567777888999999999999999999987553

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.04  E-value=21  Score=35.31  Aligned_cols=161  Identities=10%  Similarity=0.022  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHH
Q 036661          357 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIA  433 (615)
Q Consensus       357 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~  433 (615)
                      .|.....+++..+...-....++.+-.+|...|  .+...|..++++|... ..+.-..+++++.+   .|+..-..|+.
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~  140 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD  140 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence            344445555555555555555555555554433  2334445555555554 33444444443332   23333333333


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCC--CH---HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 036661          434 GCALNGEFVEALDLFHQMMELDLRP--NR---VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR  508 (615)
Q Consensus       434 ~~~~~~~~~~a~~~~~~~~~~~~~p--~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  508 (615)
                      -|-+ ++.+.+..+|.+....=++.  +.   ..|..+...  -..+.+..+.+..++.++.|...-...+..+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            3333 55555555555555432110  10   123222221  1235566666666666555554444555555566667


Q ss_pred             cCChHHHHHHHHhCC
Q 036661          509 KGKLKEALDFVQSMP  523 (615)
Q Consensus       509 ~g~~~~A~~~~~~~~  523 (615)
                      ..++.+|++++..+.
T Consensus       218 ~eN~~eai~Ilk~il  232 (711)
T COG1747         218 NENWTEAIRILKHIL  232 (711)
T ss_pred             ccCHHHHHHHHHHHh
Confidence            777777777777665

>smart00028 TPR Tetratricopeptide repeats

Probab=89.83  E-value=0.73  Score=25.29  Aligned_cols=28  Identities=18%  Similarity=0.014  Sum_probs=14.2

Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661          532 GTLLCACKIHRNIEIGEYVAYRLFELEP  559 (615)
Q Consensus       532 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p  559 (615)
                      ..++..+...|++++|...++++++.+|
T Consensus         5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        5 YNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            3444444455555555555555555444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.61  E-value=14  Score=32.50  Aligned_cols=93  Identities=5%  Similarity=-0.100  Sum_probs=54.1

Q ss_pred             HHHHHHHhc-CChHHHHHHHHhCC-----CCCCh---hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC------CCh
Q 036661          501 CMADLLGRK-GKLKEALDFVQSMP-----IKSDA---GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA------APY  565 (615)
Q Consensus       501 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~  565 (615)
                      .++..|... .+++.|+..++...     .+.+.   ..+......-...+++.+|+.+|+++..-.-+++      ..|
T Consensus       118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy  197 (288)
T KOG1586|consen  118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY  197 (288)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence            345555443 56666666666653     11111   2333333444567899999999999977554433      233


Q ss_pred             HhHH-HHHHccCChHHHHHHHHHHHhcCc
Q 036661          566 VEMA-NIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       566 ~~l~-~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +.-+ -++.-.++.-.+...+++..+..+
T Consensus       198 flkAgLChl~~~D~v~a~~ALeky~~~dP  226 (288)
T KOG1586|consen  198 FLKAGLCHLCKADEVNAQRALEKYQELDP  226 (288)
T ss_pred             HHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence            3333 334444777777777777766554

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.50  E-value=0.67  Score=28.39  Aligned_cols=28  Identities=18%  Similarity=0.261  Sum_probs=23.4

Q ss_pred             HhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          566 VEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       566 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ..|+.+|...|+.+.|+++++++...|-
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~   30 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEGD   30 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence            4688899999999999999998886553

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=89.24  E-value=3.7  Score=37.64  Aligned_cols=23  Identities=22%  Similarity=0.182  Sum_probs=16.9

Q ss_pred             hHHHHHHHHHhccCCCCCCChHh
Q 036661          545 EIGEYVAYRLFELEPHSAAPYVE  567 (615)
Q Consensus       545 ~~A~~~~~~~~~~~p~~~~~~~~  567 (615)
                      -.|.+...++.+.+|.-|..+..
T Consensus       379 ~~AvEAihRAvEFNPHVPkYLLE  401 (556)
T KOG3807|consen  379 INAVEAIHRAVEFNPHVPKYLLE  401 (556)
T ss_pred             HHHHHHHHHHhhcCCCCcHHHHH
Confidence            35788889999999986654443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=88.87  E-value=20  Score=33.35  Aligned_cols=100  Identities=9%  Similarity=0.001  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhcCChhHH---HHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHH
Q 036661          158 VMGLTQAAIHAKHLSLL---KSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGC  233 (615)
Q Consensus       158 ~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~  233 (615)
                      +..+..++...+..+..   ..+++.+.+. .+..+.++..-++.+.+.++.+.+.+.+.+|....+ ....+...+..+
T Consensus        87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i  165 (278)
T PF08631_consen   87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI  165 (278)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            44455555555544333   3333333222 222344555555666666667777777766665422 334444444433


Q ss_pred             h--cCCChhhHHHHHHHHHHCCCCCCH
Q 036661          234 T--YGDKFDDSLNFYRHMIYDGFRPDV  258 (615)
Q Consensus       234 ~--~~~~~~~a~~~~~~m~~~~~~p~~  258 (615)
                      -  .......+...+..+....+.|..
T Consensus       166 ~~l~~~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  166 KQLAEKSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             HHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence            1  122234555555555544444443

It is also involved in sporulation [].

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=88.78  E-value=1.3  Score=37.94  Aligned_cols=129  Identities=8%  Similarity=0.049  Sum_probs=84.6

Q ss_pred             HhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh-hHHHHHHHHHHhCChh
Q 036661          469 ACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG-IWGTLLCACKIHRNIE  545 (615)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~~~~~  545 (615)
                      .|-..|-+.-|.-=|....   .+.|+ +.+|+-++--+...|+++.|.+.|+... ..|... +....+-++.--|+++
T Consensus        74 lYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~  150 (297)
T COG4785          74 LYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK  150 (297)
T ss_pred             hhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence            4556666666666666655   55676 4678888888999999999999999886 444322 3333333445578999


Q ss_pred             HHHHHHHHHhccCCCCCCChHhHHHHHHc--cCChHHHHHHHHHHHhcCcccCCceeEEEec
Q 036661          546 IGEYVAYRLFELEPHSAAPYVEMANIYAL--GGRWDGVANLRTMMKRNQVKKFPGQSLVHIN  605 (615)
Q Consensus       546 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  605 (615)
                      -|.+-+.+-.+.+|++|  |..| |+|..  .=+..+|..-+.+-.+. . ....|+|..++
T Consensus       151 LAq~d~~~fYQ~D~~DP--fR~L-WLYl~E~k~dP~~A~tnL~qR~~~-~-d~e~WG~~iV~  207 (297)
T COG4785         151 LAQDDLLAFYQDDPNDP--FRSL-WLYLNEQKLDPKQAKTNLKQRAEK-S-DKEQWGWNIVE  207 (297)
T ss_pred             hhHHHHHHHHhcCCCCh--HHHH-HHHHHHhhCCHHHHHHHHHHHHHh-c-cHhhhhHHHHH
Confidence            99999999999999865  3333 55553  34566776665433221 1 22457776544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=88.78  E-value=0.72  Score=33.89  Aligned_cols=52  Identities=17%  Similarity=0.033  Sum_probs=29.7

Q ss_pred             ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC--CCChHhHHHHHHccCCh
Q 036661          527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS--AAPYVEMANIYALGGRW  578 (615)
Q Consensus       527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~  578 (615)
                      |......+...+...|++++|.+.+-.+++.+|+.  ...-..+..++.-.|.-
T Consensus        21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen   21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            34455566666667777777777777777666543  44455566666666653

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.74  E-value=35  Score=36.07  Aligned_cols=49  Identities=16%  Similarity=0.254  Sum_probs=30.0

Q ss_pred             hCChhHHHHHHHHHhccC---CCCC-CCh-----HhHHHHHHccCChHHHHHHHHHHH
Q 036661          541 HRNIEIGEYVAYRLFELE---PHSA-APY-----VEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       541 ~~~~~~A~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                      .|+..+..+....+..+.   |+.. ..|     ..+.+.|...|+.++|.....+..
T Consensus       547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~  604 (608)
T PF10345_consen  547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD  604 (608)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            677766665555555433   2222 233     234556888899999988877653

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=88.62  E-value=27  Score=34.62  Aligned_cols=176  Identities=10%  Similarity=0.034  Sum_probs=117.0

Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 036661          391 KDNVMVCNALIDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVT-FLAVL  467 (615)
Q Consensus       391 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~  467 (615)
                      +.+-....+++..+.....+.-++-+-.+|..  .+-..+..++++|... ..+.-..+|+++.+..  -|... -..|.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa  139 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA  139 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence            34444566777888777777777777777665  5667888999999988 6688899999999874  34443 44445


Q ss_pred             HHhhccCchHHHHHHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCChhhHHHHHHH
Q 036661          468 QACTHAGFLEKGWGYFNLMTKVYQVNPE------LNHYSCMADLLGRKGKLKEALDFVQSMP----IKSDAGIWGTLLCA  537 (615)
Q Consensus       468 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~  537 (615)
                      ..|.+ ++...+..+|.++...  +-|.      ...|..+...-  ..+.+..+.+..++.    ...-...+..+..-
T Consensus       140 ~~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~  214 (711)
T COG1747         140 DKYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK  214 (711)
T ss_pred             HHHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence            44544 8889999999988753  3342      12444444321  345666666666654    11122333444455


Q ss_pred             HHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661          538 CKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL  574 (615)
Q Consensus       538 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  574 (615)
                      |....|+.+|+++++..++.+..+..+...++.-+..
T Consensus       215 Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd  251 (711)
T COG1747         215 YSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD  251 (711)
T ss_pred             hccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence            6677899999999999999887776666666555544

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=88.49  E-value=9.6  Score=35.60  Aligned_cols=63  Identities=11%  Similarity=-0.023  Sum_probs=39.7

Q ss_pred             hHHHHHHHHHHHCCCCCCH--HHHHHHHHhhcccch--hhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 036661          341 DEALRLFFAMEAAGEVPDL--VTVLSMISGCGQSGA--LELGKWFDNYACSGGLKDNVMVCNALIDM  403 (615)
Q Consensus       341 ~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  403 (615)
                      +.+..+|+.+.+.|...+.  .....++..+....+  ..++.++++.+.+.++++....|..+.-.
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence            4567777777777765433  334444444433322  45778888888888888887776655433

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.46  E-value=5  Score=40.18  Aligned_cols=100  Identities=15%  Similarity=0.057  Sum_probs=49.3

Q ss_pred             HccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHH
Q 036661          201 AKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLV  280 (615)
Q Consensus       201 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  280 (615)
                      .+.|+++.|.++..+..    +..-|..|..+....+++..|.+.|.....         |..++-.+...|+-+....+
T Consensus       648 l~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l  714 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL  714 (794)
T ss_pred             hhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence            34455555555444332    445566666666666666666666555432         23333334444444433333


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036661          281 HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM  319 (615)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  319 (615)
                      -....+.|.      .|.-..+|...|+++++.+++.+-
T Consensus       715 a~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  715 ASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             HHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence            333333331      223334555667777776666443

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.33  E-value=0.81  Score=37.42  Aligned_cols=87  Identities=11%  Similarity=0.118  Sum_probs=62.8

Q ss_pred             HHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChH
Q 036661           58 PFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLE  137 (615)
Q Consensus        58 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~  137 (615)
                      ..++..+.+.+.++....+++.+...+...+...++.++..|++.++.++..++++....   .-...++..+.+.|.++
T Consensus        11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~   87 (143)
T PF00637_consen   11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE   87 (143)
T ss_dssp             CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence            345667777788888888888888776667788889999999999888888888884333   33445667777777777


Q ss_pred             HHHHHHHHhH
Q 036661          138 KVLCLFYNMR  147 (615)
Q Consensus       138 ~a~~~~~~m~  147 (615)
                      ++.-++..+.
T Consensus        88 ~a~~Ly~~~~   97 (143)
T PF00637_consen   88 EAVYLYSKLG   97 (143)
T ss_dssp             HHHHHHHCCT
T ss_pred             HHHHHHHHcc
Confidence            7777666553

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.19  E-value=4.4  Score=37.04  Aligned_cols=100  Identities=16%  Similarity=0.206  Sum_probs=70.6

Q ss_pred             cCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC-----CC--CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCC
Q 036661          185 GVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG-----LR--TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPD  257 (615)
Q Consensus       185 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  257 (615)
                      |.+....+...++..-....+++.+...+-++...     .|  +..+|-.++    -.-++++++-++..=++-|+-||
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence            44445555555555555567788888887776653     11  222332222    23467788888888888999999


Q ss_pred             HHhHHHHHHhccCchhhhhhhHHHHHHHHhc
Q 036661          258 VTTVVSLLSSCVCPEALVQGRLVHSHGIHYG  288 (615)
Q Consensus       258 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  288 (615)
                      .++++.++..+.+.+++..|.++.-.+....
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999888887777654

>PRK11619 lytic murein transglycosylase; Provisional

Probab=87.80  E-value=40  Score=35.66  Aligned_cols=82  Identities=6%  Similarity=-0.170  Sum_probs=47.5

Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccC---CCCCCChHhHHHHHHccCCh
Q 036661          502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELE---PHSAAPYVEMANIYALGGRW  578 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~  578 (615)
                      -+..+...|+..+|...+..+....+......+.......|..+.++....+....+   -..|..|......+.+.-..
T Consensus       413 ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v  492 (644)
T PRK11619        413 RVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGI  492 (644)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCC
Confidence            345566778888888887776633444455555555667777777777665442211   11233455555555555555


Q ss_pred             HHHHH
Q 036661          579 DGVAN  583 (615)
Q Consensus       579 ~~A~~  583 (615)
                      +.+.-
T Consensus       493 ~~~lv  497 (644)
T PRK11619        493 PQSYA  497 (644)
T ss_pred             CHHHH
Confidence            55553

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=87.54  E-value=41  Score=35.48  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=15.2

Q ss_pred             HHhcCChHHHHHHHHhCCCCC
Q 036661          506 LGRKGKLKEALDFVQSMPIKS  526 (615)
Q Consensus       506 ~~~~g~~~~A~~~~~~~~~~p  526 (615)
                      +...|++++|++.++++..-|
T Consensus       515 ~~~~g~~~~AL~~i~~L~liP  535 (613)
T PF04097_consen  515 LYHAGQYEQALDIIEKLDLIP  535 (613)
T ss_dssp             HHHTT-HHHHHHHHHHTT-S-
T ss_pred             HHHcCCHHHHHHHHHhCCCCC
Confidence            457899999999999988444

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.92  E-value=2  Score=37.80  Aligned_cols=67  Identities=12%  Similarity=-0.001  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHhCChhH-------HHHHHHHHhccC--CC----CCCChHhHHHHHHccCChHHHHHHHHHHHhcCcccC
Q 036661          530 IWGTLLCACKIHRNIEI-------GEYVAYRLFELE--PH----SAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKF  596 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~-------A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  596 (615)
                      .+..+.+.|...|+.+.       |...|+++.+..  |.    .......+|.++.+.|++++|.+.|.++...+-...
T Consensus       120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            44555566666666444       444444444433  22    235667788899999999999999998887655443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.89  E-value=2.7  Score=36.15  Aligned_cols=62  Identities=18%  Similarity=0.084  Sum_probs=42.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          500 SCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       500 ~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                      ...+..+.+.+..++|+...+.-. .+| +...-..++..++-.|++++|..-++-+-++.|+.
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            344556677777778777776544 444 44456667777777888888888888777777764

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=86.87  E-value=0.59  Score=45.13  Aligned_cols=99  Identities=7%  Similarity=0.012  Sum_probs=59.7

Q ss_pred             HHHhhccCchHHHHHHHHHHHHhhCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCC
Q 036661          467 LQACTHAGFLEKGWGYFNLMTKVYQVNPELN-HYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRN  543 (615)
Q Consensus       467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~  543 (615)
                      +..+...++++.|..++.+++   .+.|+-. .|..-..++.+.+++..|+.=+.++. ..|. ...|..-+.++...+.
T Consensus        11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE   87 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence            344556667777777777777   3455433 33333466677777777766655554 3343 2344555566666777


Q ss_pred             hhHHHHHHHHHhccCCCCCCChHhH
Q 036661          544 IEIGEYVAYRLFELEPHSAAPYVEM  568 (615)
Q Consensus       544 ~~~A~~~~~~~~~~~p~~~~~~~~l  568 (615)
                      +.+|+..+++...+.|+++.+-..+
T Consensus        88 ~~~A~~~l~~~~~l~Pnd~~~~r~~  112 (476)
T KOG0376|consen   88 FKKALLDLEKVKKLAPNDPDATRKI  112 (476)
T ss_pred             HHHHHHHHHHhhhcCcCcHHHHHHH
Confidence            7777777777777777765544433

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.86  E-value=15  Score=31.96  Aligned_cols=127  Identities=16%  Similarity=0.110  Sum_probs=76.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCchHHHHHHHHHHHHh-hCCCCChhHHHHHHHH
Q 036661          428 WTTMIAGCALNGEFVEALDLFHQMMELDLRP-NRVTFLAVLQACTHAGFLEKGWGYFNLMTKV-YQVNPELNHYSCMADL  505 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~  505 (615)
                      .+..++.+.+.+...+++...++-++.  +| |..+-..++..++-.|++++|..-++-...- ....+....|..++++
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            344566777888899999988887776  45 4456777888899999999998877766521 0122334455555543


Q ss_pred             HHhcCChHHHH-HHHHhC--C---CCCChhhHHHHHHH--HHHhCChhHHHHHHHHHhccCCCCCC
Q 036661          506 LGRKGKLKEAL-DFVQSM--P---IKSDAGIWGTLLCA--CKIHRNIEIGEYVAYRLFELEPHSAA  563 (615)
Q Consensus       506 ~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~p~~~~  563 (615)
                             +.+. ++|..-  +   ..|.+.-...+..+  +...|..+.+..+-+.+++.-|..+.
T Consensus        82 -------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG  140 (273)
T COG4455          82 -------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG  140 (273)
T ss_pred             -------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence                   2222 233221  1   22333333333333  33344666677778888888776443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=86.85  E-value=0.81  Score=26.21  Aligned_cols=24  Identities=8%  Similarity=0.098  Sum_probs=13.6

Q ss_pred             CCChHHHHHHHHHhhcCCChhHHH
Q 036661           86 WSDIFVQTTMVDMYAKCDRLDCAY  109 (615)
Q Consensus        86 ~~~~~~~~~l~~~~~~~g~~~~a~  109 (615)
                      |.+...|+.+...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            344555566666666666665554

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=86.71  E-value=5.3  Score=29.67  Aligned_cols=60  Identities=15%  Similarity=0.175  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661          443 EALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD  504 (615)
Q Consensus       443 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  504 (615)
                      +..+-++.+...++-|++......+++|.+.+++..|.++++.++.+.+..  ...|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence            455566666667778888888888888888888888888888887654432  225655543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.70  E-value=7.6  Score=39.01  Aligned_cols=38  Identities=16%  Similarity=0.104  Sum_probs=18.7

Q ss_pred             hcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHH
Q 036661          305 KCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALR  345 (615)
Q Consensus       305 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  345 (615)
                      -.++++.|..++..++++   ..+.++.-+-++|-.++|++
T Consensus       598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~  635 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE  635 (794)
T ss_pred             hhccccccccccccCchh---hhhhHHhHhhhccchHhhhh
Confidence            346666666655555422   22334444445555555544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.62  E-value=44  Score=34.80  Aligned_cols=79  Identities=13%  Similarity=0.008  Sum_probs=45.2

Q ss_pred             ChHHHHHHHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC---ChHHHHH
Q 036661          511 KLKEALDFVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG---RWDGVAN  583 (615)
Q Consensus       511 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~  583 (615)
                      +.+.+...+.+....-+......+...|..    ..+.+.|...+.++.+..   +....+++..+...-   .+..|.+
T Consensus       454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~  530 (552)
T KOG1550|consen  454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR  530 (552)
T ss_pred             chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence            344555555555433334444444444432    235777777777776665   666777777765431   1567777


Q ss_pred             HHHHHHhcC
Q 036661          584 LRTMMKRNQ  592 (615)
Q Consensus       584 ~~~~~~~~~  592 (615)
                      ++++..+.+
T Consensus       531 ~~~~~~~~~  539 (552)
T KOG1550|consen  531 YYDQASEED  539 (552)
T ss_pred             HHHHHHhcC
Confidence            777766544

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.44  E-value=6.1  Score=36.16  Aligned_cols=48  Identities=8%  Similarity=0.124  Sum_probs=30.3

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661          440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMT  487 (615)
Q Consensus       440 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  487 (615)
                      ++++++.++..=++-|+-||..+++.++..+.+.+++.+|..+.-.+.
T Consensus       115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~  162 (418)
T KOG4570|consen  115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM  162 (418)
T ss_pred             ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            555666666666666666666666666666666666666666555544

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=86.15  E-value=49  Score=34.94  Aligned_cols=27  Identities=15%  Similarity=0.244  Sum_probs=16.0

Q ss_pred             HHHHHHHHHhhc---cCchHHHHHHHHHHH
Q 036661          461 VTFLAVLQACTH---AGFLEKGWGYFNLMT  487 (615)
Q Consensus       461 ~~~~~l~~~~~~---~~~~~~a~~~~~~~~  487 (615)
                      .-+..|+..|.+   ..+..+|.+++--+.
T Consensus       325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~  354 (613)
T PF04097_consen  325 LNFARLIGQYTRSFEITDPREALQYLYLIC  354 (613)
T ss_dssp             --HHHHHHHHHHTTTTT-HHHHHHHHHGGG
T ss_pred             cCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            445666666553   557778888777665

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.98  E-value=17  Score=29.47  Aligned_cols=50  Identities=12%  Similarity=0.048  Sum_probs=29.0

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHhhccCchHHHHHHHHHHHH
Q 036661          437 LNGEFVEALDLFHQMMELDLRPNRVTFLA-VLQACTHAGFLEKGWGYFNLMTK  488 (615)
Q Consensus       437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~  488 (615)
                      ..++++++..++..|.-.  +|+..-... -...+...|++++|..+|+.+..
T Consensus        22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~   72 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLS   72 (153)
T ss_pred             hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence            356667777777766653  554432221 23345666777777777777664

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>smart00028 TPR Tetratricopeptide repeats

Probab=85.97  E-value=1  Score=24.58  Aligned_cols=30  Identities=13%  Similarity=0.144  Sum_probs=26.0

Q ss_pred             CChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          563 APYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      .+|..++.+|...|++++|...+++..+..
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~   31 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELD   31 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            467889999999999999999998887543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=85.81  E-value=2.1  Score=42.50  Aligned_cols=99  Identities=14%  Similarity=0.004  Sum_probs=67.2

Q ss_pred             ccCchHHHHHHHHHHHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHH
Q 036661          472 HAGFLEKGWGYFNLMTKVYQVNPEL--NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIG  547 (615)
Q Consensus       472 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A  547 (615)
                      -.|+...|...+..+.   ...|-.  .....|+..+.+.|-.-+|..++.+..  ....+.++..+++++....+++.|
T Consensus       619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a  695 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA  695 (886)
T ss_pred             ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence            4677777877777665   333322  234456677777777777777776654  333445666777777778888888


Q ss_pred             HHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          548 EYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       548 ~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ++.++++++.+|+++.+-..|-.+-+
T Consensus       696 ~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  696 LEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            88888888888888777776655443

>PRK09687 putative lyase; Provisional

Probab=85.74  E-value=30  Score=32.12  Aligned_cols=73  Identities=11%  Similarity=-0.018  Sum_probs=32.6

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036661          393 NVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC  470 (615)
Q Consensus       393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  470 (615)
                      +..+-...+.++.+.|+......+.+.+..++  .....+.++...|+. +|+..+.++.+.  .||...-...+.+|
T Consensus       205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            33344444455555555332223333333233  123445555555553 466666666553  34544444444433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.37  E-value=53  Score=34.60  Aligned_cols=55  Identities=11%  Similarity=0.036  Sum_probs=34.6

Q ss_pred             HHHHHccCCHHHHHHHHHhcccCCC---CcchHHHHHHHHhcCCChhhHHHHHHHHHH
Q 036661          197 ISAYAKCNDLKMAELVFRGIEEGLR---TVVSWNSIIGGCTYGDKFDDSLNFYRHMIY  251 (615)
Q Consensus       197 ~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  251 (615)
                      ++-+.+.+.+++|+.+-+......+   ....+..+|..+...|++++|-...-.|..
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g  420 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG  420 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence            3455566677777777766555433   334566667777777777777766666643

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=85.30  E-value=27  Score=33.79  Aligned_cols=59  Identities=8%  Similarity=0.019  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHhccCCC-CCCChHhHHHHHH-ccCChHHHHHHHHHHHh
Q 036661          532 GTLLCACKIHRNIEIGEYVAYRLFELEPH-SAAPYVEMANIYA-LGGRWDGVANLRTMMKR  590 (615)
Q Consensus       532 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~  590 (615)
                      ...+....+.|-+..|.+..+-++.++|. ||-.....++.|+ +.++++--+++.+....
T Consensus       107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            34456677899999999999999999998 8888888888776 77888878888877655

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.28  E-value=44  Score=34.76  Aligned_cols=114  Identities=15%  Similarity=0.179  Sum_probs=58.0

Q ss_pred             chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhCCCCCChhhHHHHHHHHH----HhCChhHH
Q 036661          475 FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK---GKLKEALDFVQSMPIKSDAGIWGTLLCACK----IHRNIEIG  547 (615)
Q Consensus       475 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~A  547 (615)
                      +...|..++...... | .|+....  ++.++...   .+...|.++|..+...-.......+...+.    ...+.+.|
T Consensus       308 d~~~A~~~~~~aA~~-g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAEL-G-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhc-C-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            455566666666532 2 2333222  33333322   245667777766652222222222332222    23477777


Q ss_pred             HHHHHHHhccCCCCCCChHhHHHHHHcc-CChHHHHHHHHHHHhcCcc
Q 036661          548 EYVAYRLFELEPHSAAPYVEMANIYALG-GRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       548 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~  594 (615)
                      ..+++++-+.++  +.+...++..+.-. ++++.+.-.+..+.+.+..
T Consensus       384 ~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~  429 (552)
T KOG1550|consen  384 FAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE  429 (552)
T ss_pred             HHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence            777777777762  44444444443322 7777777776666665553

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=85.17  E-value=30  Score=31.67  Aligned_cols=32  Identities=22%  Similarity=-0.011  Sum_probs=21.5

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 036661          291 LDVSVINTLISMYSKCGDIDSARFLFDGMCDR  322 (615)
Q Consensus       291 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  322 (615)
                      -++.....+...|.+.|++.+|+..|-.-..+
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~  119 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDP  119 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence            36677788888888999888888777554333

; PDB: 3LKU_E 2WPV_G.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.78  E-value=29  Score=31.15  Aligned_cols=218  Identities=16%  Similarity=0.154  Sum_probs=102.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHhhcccchhhHHHHHHHHHHh-----cCCCCchHH
Q 036661          327 WTAMISGYAQKGDLDEALRLFFAMEAA---GE--VPDLVTVLSMISGCGQSGALELGKWFDNYACS-----GGLKDNVMV  396 (615)
Q Consensus       327 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  396 (615)
                      .-.++..+.+.+++++.+..+.++..-   .+  .-+..+.+.++.-.+.+.+.+....+++.-.+     .+-..-..+
T Consensus        68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT  147 (440)
T KOG1464|consen   68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT  147 (440)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence            344556666666666666666655321   11  12233445555544444444444333332211     011111122


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCC--------CC-------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH
Q 036661          397 CNALIDMYSKCGSIGDARELFYALPE--------KT-------VVSWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNR  460 (615)
Q Consensus       397 ~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~  460 (615)
                      -.-|...|...+++.+..++++++..        .|       ...|..-+..|...++-.....++++..... --|.+
T Consensus       148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP  227 (440)
T KOG1464|consen  148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP  227 (440)
T ss_pred             cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence            33455566666666666666665532        01       2356666677777777777777777665421 23444


Q ss_pred             HHHHHHHHHh-----hccCchHHHHHHHHHHHHhhCC--CCChh---HHHHHHHHHHhcCC----hHHHHHHHHhCCCCC
Q 036661          461 VTFLAVLQAC-----THAGFLEKGWGYFNLMTKVYQV--NPELN---HYSCMADLLGRKGK----LKEALDFVQSMPIKS  526 (615)
Q Consensus       461 ~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~---~~~~l~~~~~~~g~----~~~A~~~~~~~~~~p  526 (615)
                      .... .++-|     .+.|.+++|..-|-++-+.+.-  .|...   -|..|+..+.+.|-    -++|.    -....|
T Consensus       228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdP  302 (440)
T KOG1464|consen  228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDP  302 (440)
T ss_pred             HHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCH
Confidence            4333 33333     3566777765433333322221  12221   24445566665541    11111    011345


Q ss_pred             ChhhHHHHHHHHHHhCChhHHHHH
Q 036661          527 DAGIWGTLLCACKIHRNIEIGEYV  550 (615)
Q Consensus       527 ~~~~~~~l~~~~~~~~~~~~A~~~  550 (615)
                      .......++.+|.. ++..+-+++
T Consensus       303 EIlAMTnlv~aYQ~-NdI~eFE~I  325 (440)
T KOG1464|consen  303 EILAMTNLVAAYQN-NDIIEFERI  325 (440)
T ss_pred             HHHHHHHHHHHHhc-ccHHHHHHH
Confidence            55566677777653 344333333

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.43  E-value=1.8  Score=25.87  Aligned_cols=29  Identities=14%  Similarity=0.069  Sum_probs=21.2

Q ss_pred             hhHHHHHHHHHHhCChhHHHHHHHHHhcc
Q 036661          529 GIWGTLLCACKIHRNIEIGEYVAYRLFEL  557 (615)
Q Consensus       529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  557 (615)
                      .+++.+...|...|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            35667778888888888888888887753

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=84.03  E-value=5  Score=37.03  Aligned_cols=91  Identities=14%  Similarity=0.071  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC--hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP----IKSD--AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI  571 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  571 (615)
                      +|..=+.-|.+..++..|...|.+..    ..|+  ...|.....+....||+..|+.-..+++.++|.+..+|..=+.+
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            34444566778889999999998765    2333  34556666666778999999999999999999999999999999


Q ss_pred             HHccCChHHHHHHHHHH
Q 036661          572 YALGGRWDGVANLRTMM  588 (615)
Q Consensus       572 ~~~~g~~~~A~~~~~~~  588 (615)
                      +....++++|....+..
T Consensus       163 ~~eLe~~~~a~nw~ee~  179 (390)
T KOG0551|consen  163 LLELERFAEAVNWCEEG  179 (390)
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999977777766544

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.24  E-value=17  Score=36.58  Aligned_cols=50  Identities=16%  Similarity=0.090  Sum_probs=28.4

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCH------------HHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661          437 LNGEFVEALDLFHQMMELDLRPNR------------VTFLAVLQACTHAGFLEKGWGYFNLMT  487 (615)
Q Consensus       437 ~~~~~~~a~~~~~~~~~~~~~p~~------------~~~~~l~~~~~~~~~~~~a~~~~~~~~  487 (615)
                      ..+-++++...|.-.... ..|+.            .+...+...+..+|+.+.|..++++..
T Consensus       250 hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~L  311 (665)
T KOG2422|consen  250 HSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGL  311 (665)
T ss_pred             cchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            345566776666666553 13321            233444456667777777777776653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.60  E-value=2.6  Score=22.22  Aligned_cols=20  Identities=25%  Similarity=0.305  Sum_probs=10.8

Q ss_pred             HHHHHHHhcCChHHHHHHHH
Q 036661          501 CMADLLGRKGKLKEALDFVQ  520 (615)
Q Consensus       501 ~l~~~~~~~g~~~~A~~~~~  520 (615)
                      .++.++...|++++|..+++
T Consensus         6 ~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    6 ALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHcCCHHHHHHHHh
Confidence            34555555555555555543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=82.41  E-value=39  Score=30.76  Aligned_cols=54  Identities=7%  Similarity=0.090  Sum_probs=37.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHhhccCchHHHHHHHHH
Q 036661          432 IAGCALNGEFVEALDLFHQMMELDLRPNRV-------TFLAVLQACTHAGFLEKGWGYFNL  485 (615)
Q Consensus       432 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~~  485 (615)
                      ..-..+.+++++|+..+.++...|+..+..       +...+...|...|++....+....
T Consensus        10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~   70 (421)
T COG5159          10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITS   70 (421)
T ss_pred             HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHh
Confidence            334456788999999999998888776644       345566778888877665555443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=82.38  E-value=6.5  Score=39.27  Aligned_cols=135  Identities=13%  Similarity=0.006  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHhhcc--CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhCC-CCC--Chhh
Q 036661          457 RPNRVTFLAVLQACTHA--GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLG-RKGKLKEALDFVQSMP-IKS--DAGI  530 (615)
Q Consensus       457 ~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~-~~p--~~~~  530 (615)
                      -|+..+...++.-....  ...+-+-.++-.|.+  ...|--.+.+ ++-.|. -.|+...|...+..+. ..|  +...
T Consensus       568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~  644 (886)
T KOG4507|consen  568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP  644 (886)
T ss_pred             CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence            35555555544433221  122334444444442  3334333333 233444 4699999999998875 444  3346


Q ss_pred             HHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          531 WGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       531 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      +..|.+...+.|-.-+|-.++.+.+.++...|-++..+|++|....+.+.|++.++...+....
T Consensus       645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~  708 (886)
T KOG4507|consen  645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK  708 (886)
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence            6778888888999999999999999999888999999999999999999999999999886653

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=82.22  E-value=18  Score=26.73  Aligned_cols=62  Identities=15%  Similarity=0.168  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 036661          440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMA  503 (615)
Q Consensus       440 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  503 (615)
                      |.-++.+-++.+...++-|++......+++|.+.+++..|.++++.++.+.+.  ....|..++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l   83 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL   83 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence            34456666777777778888888888888888888888888888877754332  333454443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=82.20  E-value=4.2  Score=30.23  Aligned_cols=52  Identities=13%  Similarity=0.087  Sum_probs=36.1

Q ss_pred             HHhCChhHHHHHHHHHhccCCCC---------CCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          539 KIHRNIEIGEYVAYRLFELEPHS---------AAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       539 ~~~~~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      .+.||+.+|.+.+.+.+.....+         ..+...++.++...|++++|.+.+++..+
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~   69 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR   69 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            45677777777777776543221         12345677888888999999888888765

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=81.85  E-value=1.8  Score=24.00  Aligned_cols=30  Identities=23%  Similarity=0.289  Sum_probs=23.9

Q ss_pred             CChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661          542 RNIEIGEYVAYRLFELEPHSAAPYVEMANI  571 (615)
Q Consensus       542 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  571 (615)
                      |+.+.|..+++++++..|.++..|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            567888889999998888888887776654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.11  E-value=78  Score=33.43  Aligned_cols=41  Identities=27%  Similarity=0.392  Sum_probs=17.2

Q ss_pred             HHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcC
Q 036661           94 TMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMG  134 (615)
Q Consensus        94 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g  134 (615)
                      ..+..+...|++++|-...-.|...+..-|.--+..+...+
T Consensus       397 ~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~  437 (846)
T KOG2066|consen  397 TYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELD  437 (846)
T ss_pred             HHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccc
Confidence            33444444444444444444444444444444444333333

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=81.11  E-value=2.7  Score=36.46  Aligned_cols=59  Identities=15%  Similarity=0.167  Sum_probs=35.1

Q ss_pred             HHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661          506 LGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP  564 (615)
Q Consensus       506 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  564 (615)
                      ....|+.+.|.+++.++. .-| ....|..+....-+.|+++.|.+.|++.++++|++...
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence            445566666666666665 222 33456556666666666666666666666666665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	615
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 4e-11
 Identities = 91/624 (14%), Positives = 168/624 (26%), Gaps = 225/624 (36%)

Query: 44  RMKKNDIEPNNLTFPFIAKA-CAKLSDFL---YSQMIHGHIVKSP---------FWSDIF 90
           + +  DI        F+    C  + D      S+    HI+ S          FW+ + 
Sbjct: 15  QYQYKDILSVFED-AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 91  VQTTMVDMYAKCDRLDCAYK-LFDKM------PDRDVAS--------WNAMIVGFAQMGF 135
            Q  MV  + + + L   YK L   +      P              +N   V FA+   
Sbjct: 74  KQEEMVQKFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNV 131

Query: 136 --LEKVLCL---FYNMRLVGIQADFVTV--MG------LTQAAIHAKHLSLLKSVHSFGI 182
             L+  L L      +R     A  V +  +       +      +  +   +    F I
Sbjct: 132 SRLQPYLKLRQALLELR----PAKNVLIDGVLGSGKTWVALDVCLSYKV---QCKMDFKI 184

Query: 183 HIGVDADVSVCNTWISAYAKCND----LKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDK 238
                        W++    CN     L+M + +   I+                +  D 
Sbjct: 185 F------------WLN-LKNCNSPETVLEMLQKLLYQIDPNW------------TSRSD- 218

Query: 239 FDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINT 298
              ++    H I    R        LL S      L    LV          L       
Sbjct: 219 HSSNIKLRIHSIQAELR-------RLLKSKPYENCL----LV----------LL------ 251

Query: 299 LISMYSKCGDIDSARFL--FDGMCDR----TR-VSWTAMISGYAQKG----------DLD 341
                    ++ +A+    F+  C +    TR    T  +S                  D
Sbjct: 252 ---------NVQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 342 EALRLF--FAMEAAGEVPDLVT-----VLSMISGCGQSGAL---ELGKWFDNYACSGGLK 391
           E   L   +      ++P  V       LS+I             L  W DN+       
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSII------AESIRDGLATW-DNW-----KH 349

Query: 392 DNVMVCNALIDMYSKCGSIGDARELFYAL---------PEKT-VVSWTTMIAGCALNGEF 441
            N      +I+         + R++F  L         P     + W  +I         
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK------SD 403

Query: 442 VEA-LDLFHQ--MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKV---YQVNPE 495
           V   ++  H+  ++E   + + ++  ++               Y  L  K+   Y ++  
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSI---------------YLELKVKLENEYALHRS 448

Query: 496 L-NHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRL 554
           + +HY            + +  D    +P   D   +                 ++ + L
Sbjct: 449 IVDHY-----------NIPKTFDSDDLIPPYLDQYFY----------------SHIGHHL 481

Query: 555 FELEPHSAAPYVEMANIYALGGRW 578
             +E            ++ L  R+
Sbjct: 482 KNIEH--PERMTLFRMVF-LDFRF 502

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 52/364 (14%), Positives = 103/364 (28%), Gaps = 110/364 (30%)

Query: 11  NKIYRSSTI---NQWNSQIREAVD--------------------KNEAH----------- 36
           +K Y +  +   N  N++   A +                        H           
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 37  --KALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFV--Q 92
             +   L    K  D  P +L  P            + ++ I   +     W  +     
Sbjct: 300 PDEVKSLLL--KYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 93  TTMVDMYAKCDRLDCAY--KLFDKM---PDRDV--------ASWNAMIVGFAQMGFLEKV 139
           TT+++     + L+ A   K+FD++   P              W  +I           V
Sbjct: 356 TTIIES--SLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDV-----MVV 407

Query: 140 LCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSL------LKSVH-----SFGIHIGVDA 188
           +   +   LV  Q    T+      +I + +L L        ++H      + I    D+
Sbjct: 408 VNKLHKYSLVEKQPKESTI------SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 189 DVSVCNTWISAY---------AKCNDLKMAELV------FRGIEEGLR-TVVSWNSIIGG 232
           D  +   ++  Y               +   L       FR +E+ +R    +WN+    
Sbjct: 462 D-DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 233 C-------TYGDKFDDSLNFYRHMIYD--GFRPDVTTVVSLLSSCVCPEALVQGRLVHSH 283
                    Y     D+   Y  ++     F P +   + + S       L++  L+   
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL-ICSKYTD---LLRIALMAED 576

Query: 284 GIHY 287
              +
Sbjct: 577 EAIF 580

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 58.7 bits (140), Expect = 5e-09
 Identities = 14/93 (15%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 288 GFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTR-------VSWTAMISGYAQKGDL 340
                   +            +  A  L      + +         + A++ G+A++G  
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181

Query: 341 DEALRLFFAMEAAGEVPDLVTVLSMISGCGQSG 373
            E + + F ++ AG  PDL++  + +   G+  
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 57.5 bits (137), Expect = 1e-08
 Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 8/114 (7%)

Query: 398 NALIDMYSKCGSIGDARELFYALPEK-------TVVSWTTMIAGCALNGEFVEALDLFHQ 450
            A          +  A  L      +       T+  +  ++ G A  G F E + +   
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190

Query: 451 MMELDLRPNRVTFLAVLQACTHAG-FLEKGWGYFNLMTKVYQVNPELNHYSCMA 503
           + +  L P+ +++ A LQ                  M++       L     ++
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLS 244

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 55.6 bits (132), Expect = 4e-08
 Identities = 23/188 (12%), Positives = 57/188 (30%), Gaps = 10/188 (5%)

Query: 331 ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSG----ALELGKWFDNYAC 386
           +     K  LD           A        +L+    C  +     A  L         
Sbjct: 99  LQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ 158

Query: 387 SGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK----TVVSWTTMIAGCALNGEFV 442
              L   + + NA++  +++ G+  +   + + + +      ++S+   +       +  
Sbjct: 159 KRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217

Query: 443 EAL-DLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSC 501
             +     QM +  L+   +    +L     A  L+         +   Q+ P +N    
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277

Query: 502 MADLLGRK 509
           + D+  + 
Sbjct: 278 LRDVYAKD 285

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 45.2 bits (105), Expect = 6e-05
 Identities = 17/161 (10%), Positives = 42/161 (26%), Gaps = 8/161 (4%)

Query: 2   AASSLPPRLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIA 61
            A  L     +   S    Q    ++EA  K           +  +  +           
Sbjct: 75  MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134

Query: 62  KACAKLSDF---LYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDR 118
           K C          +  ++H    +      + +   ++  +A+         +   + D 
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194

Query: 119 ----DVASWNAMIVGFAQMG-FLEKVLCLFYNMRLVGIQAD 154
               D+ S+ A +    +       +      M   G++  
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 26/188 (13%), Positives = 45/188 (23%), Gaps = 9/188 (4%)

Query: 399 ALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALN-GEFVEALDLFHQMMELDLR 457
            L     +   + +         + T  ++  M A           AL   HQ   L+  
Sbjct: 74  YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECM 133

Query: 458 PNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALD 517
              V      Q       L+        M    +        +    L     KL++A  
Sbjct: 134 AMTV------QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY 187

Query: 518 FVQSMPIK--SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG 575
             Q M  K      +              E  E V     + +       + +  +    
Sbjct: 188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL 247

Query: 576 GRWDGVAN 583
           G+   V N
Sbjct: 248 GKPPEVTN 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	615
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.86
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.84
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.83
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.83
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.82
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.82
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.81
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.8
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.8
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.78
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.77
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.76
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.76
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.73
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.72
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.66
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.64
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.64
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.64
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.62
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.62
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.62
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.62
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.61
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.59
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.59
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.57
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.57
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.57
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.57
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.56
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.56
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.56
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.55
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.55
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.52
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.51
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.48
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.47
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.45
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.44
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.44
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.43
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.43
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.43
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.42
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.42
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.39
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.39
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.38
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.35
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.34
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.31
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.27
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.25
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.24
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.24
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.21
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.21
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.21
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.19
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.19
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.17
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.17
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.17
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.16
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.14
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.13
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.13
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.12
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.1
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.1
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.08
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.06
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.05
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.03
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.0
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.0
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.0
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.0
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.98
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.97
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.97
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.97
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.95
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.95
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.91
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.91
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.91
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.9
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.89
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.89
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.87
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.86
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.86
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.85
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.85
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.85
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.83
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.83
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.82
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.82
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.82
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.81
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.8
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.79
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.79
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.77
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.74
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.73
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.73
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.73
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.73
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.72
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.71
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.71
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.7
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.7
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.67
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.67
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.67
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.66
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.65
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.65
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.64
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.63
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.63
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.61
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.6
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.56
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.55
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.52
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.52
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.51
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.5
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.5
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.5
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.48
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.48
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.47
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.43
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.42
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.42
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.42
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.41
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.41
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.4
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.39
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.38
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.38
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.38
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.37
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.35
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.31
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.29
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.28
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.26
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.24
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.22
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.22
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.21
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.18
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.18
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.0
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.95
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.86
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.86
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.85
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.84
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.84
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.74
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.68
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.65
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.62
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.58
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.5
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.5
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.46
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.27
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.18
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.18
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.15
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.14
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.11
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.06
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.05
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.04
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.01
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.5
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.49
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.36
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.35
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.25
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.22
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.19
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.03
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.84
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.76
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.59
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.44
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.68
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.65
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.26
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.15
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.06
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.86
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.83
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.21
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	92.41
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.29
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	91.36
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	91.06
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.82
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	90.33
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.33
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.06
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.36
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	88.23
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	87.7
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	87.59
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	87.56
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	87.13
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	85.96
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	82.37
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	81.67
2p58_C	116	Putative type III secretion protein YSCG; type III	81.61
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	80.5

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-41  Score=352.95  Aligned_cols=486  Identities=10%  Similarity=-0.038  Sum_probs=403.2

Q ss_pred             hhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHH
Q 036661           99 YAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVH  178 (615)
Q Consensus        99 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  178 (615)
                      +...|.+..+...+..++.++...|+.++..+.+.|++++|+++|++|..  ..|+..++..+..+|...|+++.|..++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~  140 (597)
T 2xpi_A           63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL  140 (597)
T ss_dssp             -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence            45567777788888888888899999999999999999999999999985  5688899999999999999999999999


Q ss_pred             HHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCC-----------------CCcchHHHHHHHHhcCCChhh
Q 036661          179 SFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGL-----------------RTVVSWNSIIGGCTYGDKFDD  241 (615)
Q Consensus       179 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~~~~~~  241 (615)
                      +.+...  +++..+++.++.+|.+.|++++|.++|+++....                 .+..+|+.++.+|.+.|++++
T Consensus       141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  218 (597)
T 2xpi_A          141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR  218 (597)
T ss_dssp             HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence            988653  6788899999999999999999999999644211                 247889999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhh--HH-HHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036661          242 SLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGR--LV-HSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDG  318 (615)
Q Consensus       242 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  318 (615)
                      |++.|++|.+.+. .+...+..+...+...+..+...  .+ +..+...+..+...+++.++..|.+.|++++|.++|+.
T Consensus       219 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  297 (597)
T 2xpi_A          219 AKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS  297 (597)
T ss_dssp             HHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence            9999999998652 24455555665555544433322  11 44444444445556677778899999999999999999


Q ss_pred             cCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHH
Q 036661          319 MCD--RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMV  396 (615)
Q Consensus       319 ~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  396 (615)
                      +..  ++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..+
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~  375 (597)
T 2xpi_A          298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT  375 (597)
T ss_dssp             STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred             hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence            966  788899999999999999999999999999865 4477788999999999999999999999998665 667889


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 036661          397 CNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA  473 (615)
Q Consensus       397 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  473 (615)
                      ++.++.+|.+.|++++|.++|+++.+   .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.
T Consensus       376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  454 (597)
T 2xpi_A          376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQL  454 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence            99999999999999999999998754   467899999999999999999999999999874 45778999999999999


Q ss_pred             CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC--hhhHHHHHHHHHHhCCh
Q 036661          474 GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-------IKSD--AGIWGTLLCACKIHRNI  544 (615)
Q Consensus       474 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~--~~~~~~l~~~~~~~~~~  544 (615)
                      |++++|.++|+++.+.  .+.+..+|..++.+|.+.|++++|.++|+++.       ..|+  ..+|..++.+|.+.|++
T Consensus       455 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~  532 (597)
T 2xpi_A          455 GNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY  532 (597)
T ss_dssp             TCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence            9999999999999853  34467889999999999999999999999984       3666  67899999999999999


Q ss_pred             hHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          545 EIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       545 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      ++|+..++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+..+.
T Consensus       533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  582 (597)
T 2xpi_A          533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN  582 (597)
T ss_dssp             HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999886643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.7e-41  Score=349.87  Aligned_cols=509  Identities=8%  Similarity=-0.045  Sum_probs=358.5

Q ss_pred             hhhhccCCCchhcHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCC
Q 036661            9 RLNKIYRSSTINQWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSD   88 (615)
Q Consensus         9 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~   88 (615)
                      .|+.++.++.. .|+.++..+.+.|++++|+.+|++|..  ..|+..++..++.+|.+.|++++|..+++.+...  +++
T Consensus        75 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~  149 (597)
T 2xpi_A           75 AQNTDSLSRED-YLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRS  149 (597)
T ss_dssp             -------CHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTC
T ss_pred             ccccchHHHHH-HHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccc
Confidence            34444444444 566666666666666666666666654  3345555666666666666666666666655432  455


Q ss_pred             hHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhc
Q 036661           89 IFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHA  168 (615)
Q Consensus        89 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  168 (615)
                      +.+++.++.+|.+.|++++|.++|+++...+...     .++.+.++           ...+..++..+|..+..++.+.
T Consensus       150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~  213 (597)
T 2xpi_A          150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-----------QDGGIKLEASMCYLRGQVYTNL  213 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-----------CCSSCCHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-----------cccccchhHHHHHHHHHHHHHc
Confidence            5666666666666666666666666432221000     00000000           0112233344455555555555


Q ss_pred             CChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHH
Q 036661          169 KHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRH  248 (615)
Q Consensus       169 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  248 (615)
                      |++++|.++|+.+.+.+. .+...+..+...+...+..+  ......+.                            +..
T Consensus       214 g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~--~~~~~~l~----------------------------~~~  262 (597)
T 2xpi_A          214 SNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEE--WDLVLKLN----------------------------YST  262 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHH--HHHHHHSC----------------------------THH
T ss_pred             CCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhH--HHHHHhcC----------------------------Ccc
Confidence            555555555544444321 11222222222221111110  00000000                            233


Q ss_pred             HHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcc
Q 036661          249 MIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRV  325 (615)
Q Consensus       249 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~  325 (615)
                      +...+..+...+|+.++..+.+.|+++.|..+++.+.+.  +++..++..++..|.+.|++++|.++|+++   .+.+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  340 (597)
T 2xpi_A          263 YSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD  340 (597)
T ss_dssp             HHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT
T ss_pred             cccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH
Confidence            333344445556666777788888888888888887765  578888999999999999999999999987   344777


Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 036661          326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS  405 (615)
Q Consensus       326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (615)
                      +++.++.++.+.|++++|..+++++.... +.+..++..++..|.+.|++++|.++|+.+.+.. +.+..+++.++.+|.
T Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  418 (597)
T 2xpi_A          341 VYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFA  418 (597)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            89999999999999999999999998653 5678889999999999999999999999998765 556789999999999


Q ss_pred             hcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 036661          406 KCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGY  482 (615)
Q Consensus       406 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  482 (615)
                      +.|++++|.++|+++..   .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++
T Consensus       419 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  497 (597)
T 2xpi_A          419 IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINH  497 (597)
T ss_dssp             HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999987654   477899999999999999999999999999874 45788999999999999999999999


Q ss_pred             HHHHHHhh---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661          483 FNLMTKVY---QVNPE--LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLF  555 (615)
Q Consensus       483 ~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  555 (615)
                      |+++.+..   +..|+  ..+|..++.+|.+.|++++|.++++++.  .+.+..++..++.+|...|++++|.+.+++++
T Consensus       498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  577 (597)
T 2xpi_A          498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL  577 (597)
T ss_dssp             HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99998542   45677  6799999999999999999999999986  44478899999999999999999999999999


Q ss_pred             ccCCCCCCChHhHHHHHHc
Q 036661          556 ELEPHSAAPYVEMANIYAL  574 (615)
Q Consensus       556 ~~~p~~~~~~~~l~~~~~~  574 (615)
                      +++|+++..+..++.+|..
T Consensus       578 ~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          578 AISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             HHCTTCHHHHHHHHHTTC-
T ss_pred             hcCCCChHHHHHHHHHHhc
Confidence            9999999999999988753

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=8.1e-28  Score=236.95  Aligned_cols=373  Identities=11%  Similarity=0.061  Sum_probs=265.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhh
Q 036661          163 QAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDD  241 (615)
Q Consensus       163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~  241 (615)
                      ..+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+..| +..+|..+...+.+.|++++
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~   85 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            34455666666666666655542 22334455555555666666666666655444322 44555666666666666666


Q ss_pred             HHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc--
Q 036661          242 SLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM--  319 (615)
Q Consensus       242 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--  319 (615)
                      |++.|+++....                                    +.+...+..+..++.+.|++++|.+.|+++  
T Consensus        86 A~~~~~~al~~~------------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  129 (388)
T 1w3b_A           86 AIEHYRHALRLK------------------------------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ  129 (388)
T ss_dssp             HHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC------------------------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            666666655432                                    223344556666666666666666666665  


Q ss_pred             -CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHH
Q 036661          320 -CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCN  398 (615)
Q Consensus       320 -~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  398 (615)
                       .+.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|+++.|...++.+.+.+ +.+...+.
T Consensus       130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~  207 (388)
T 1w3b_A          130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI  207 (388)
T ss_dssp             HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHH
Confidence             22233455666666777777777777777776652 3345667777777777777777777777777654 44566777


Q ss_pred             HHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 036661          399 ALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGF  475 (615)
Q Consensus       399 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~  475 (615)
                      .+...+...|++++|...+++...   .+..++..+..++...|++++|+..++++.+.+ +.+..++..+..++.+.|+
T Consensus       208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  286 (388)
T 1w3b_A          208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGS  286 (388)
T ss_dssp             HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC
Confidence            788888888888888888876543   356788888899999999999999999998863 3346788888899999999


Q ss_pred             hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHH
Q 036661          476 LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYR  553 (615)
Q Consensus       476 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~  553 (615)
                      +++|...++++.+.  .+.+..++..++.++.+.|++++|.+.++++. ..| +...+..++..+.+.|++++|...+++
T Consensus       287 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (388)
T 1w3b_A          287 VAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999998853  35567788889999999999999999999887 334 466888888999999999999999999


Q ss_pred             HhccCCCCCCChHhHHHHHHccCC
Q 036661          554 LFELEPHSAAPYVEMANIYALGGR  577 (615)
Q Consensus       554 ~~~~~p~~~~~~~~l~~~~~~~g~  577 (615)
                      +++++|+++.+|..++.++...|+
T Consensus       365 a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          365 AIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHhhCCCCHHHHHhHHHHHHHccC
Confidence            999999999999999998887764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=6.5e-27  Score=230.45  Aligned_cols=356  Identities=14%  Similarity=0.063  Sum_probs=291.2

Q ss_pred             HHHHHccCCHHHHHHHHHhcccCCCC-cchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhh
Q 036661          197 ISAYAKCNDLKMAELVFRGIEEGLRT-VVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALV  275 (615)
Q Consensus       197 ~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  275 (615)
                      ...+.+.|++++|.+.+..+.+..|+ ...+..+...+...|++++|...++...+                        
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~------------------------   61 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK------------------------   61 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------------
Confidence            34455566666666666555444332 33344444455555555555555555443                        


Q ss_pred             hhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661          276 QGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEA  352 (615)
Q Consensus       276 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  352 (615)
                                 .. +.+..++..+...|.+.|++++|...|+++   .+.+..+|..+..++.+.|++++|.+.|+++.+
T Consensus        62 -----------~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  129 (388)
T 1w3b_A           62 -----------QN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ  129 (388)
T ss_dssp             -----------HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred             -----------cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                       22 456677889999999999999999999987   334556799999999999999999999999988


Q ss_pred             CCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHH
Q 036661          353 AGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWT  429 (615)
Q Consensus       353 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~  429 (615)
                      .. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++..   .+...|.
T Consensus       130 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  207 (388)
T 1w3b_A          130 YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI  207 (388)
T ss_dssp             HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            64 3344566777888889999999999999998875 55678899999999999999999999998765   4567899


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 036661          430 TMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK  509 (615)
Q Consensus       430 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  509 (615)
                      .+...+...|++++|+..+++..+.. +.+..++..+..++...|++++|...++++.+.  .+.+...+..++.++.+.
T Consensus       208 ~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~  284 (388)
T 1w3b_A          208 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEK  284 (388)
T ss_dssp             HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999863 334678999999999999999999999999853  233467889999999999


Q ss_pred             CChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHH
Q 036661          510 GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTM  587 (615)
Q Consensus       510 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  587 (615)
                      |++++|.+.++++.  .+++..++..++..+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+++
T Consensus       285 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (388)
T 1w3b_A          285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999987  5567788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCc
Q 036661          588 MKRNQV  593 (615)
Q Consensus       588 ~~~~~~  593 (615)
                      +.+..+
T Consensus       365 a~~~~p  370 (388)
T 1w3b_A          365 AIRISP  370 (388)
T ss_dssp             HHTTCT
T ss_pred             HHhhCC
Confidence            987543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=4.7e-28  Score=241.75  Aligned_cols=217  Identities=10%  Similarity=0.015  Sum_probs=177.7

Q ss_pred             hHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhcc
Q 036661           36 HKALLLFRRMKKNDIEPNNL-TFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDK  114 (615)
Q Consensus        36 ~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  114 (615)
                      ..+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+...++      
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------   80 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------   80 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence            34556667777777766554 58888999999999999999999999999999999999999999887764432      


Q ss_pred             CCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHH
Q 036661          115 MPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCN  194 (615)
Q Consensus       115 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  194 (615)
                                      .+.+.+++|.++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+
T Consensus        81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn  144 (501)
T 4g26_A           81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG  144 (501)
T ss_dssp             ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence                            1345578899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCHHHHHHHHHhcccC--CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCch
Q 036661          195 TWISAYAKCNDLKMAELVFRGIEEG--LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPE  272 (615)
Q Consensus       195 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  272 (615)
                      .+|.+|++.|++++|.++|++|.+.  .|+..+|+.+|.+|++.|++++|.++|++|.+.|..|+..||+.++..+...+
T Consensus       145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~  224 (501)
T 4g26_A          145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV  224 (501)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence            9999999999999999999998876  88999999999999999999999999999999999999999999998887654


Q ss_pred             hh
Q 036661          273 AL  274 (615)
Q Consensus       273 ~~  274 (615)
                      ..
T Consensus       225 a~  226 (501)
T 4g26_A          225 AT  226 (501)
T ss_dssp             HH
T ss_pred             ch
Confidence            43

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=1.5e-26  Score=231.00  Aligned_cols=185  Identities=12%  Similarity=0.070  Sum_probs=167.4

Q ss_pred             cchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCc---------hhhhhhhHHHHHHHHhcCCCCh
Q 036661          223 VVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCP---------EALVQGRLVHSHGIHYGFDLDV  293 (615)
Q Consensus       223 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~  293 (615)
                      ...++.+|.+|++.|++++|+++|++|.+.|++||..||+.+|.+|++.         +.++.|..+|++|.+.|+.||.
T Consensus        26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~  105 (501)
T 4g26_A           26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE  105 (501)
T ss_dssp             HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence            3457788899999999999999999999999999999999999988754         4467889999999999999999


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhcc----CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 036661          294 SVINTLISMYSKCGDIDSARFLFDGM----CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGC  369 (615)
Q Consensus       294 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  369 (615)
                      .+|++++.+|++.|++++|.++|++|    ..||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~  185 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS  185 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999988    56789999999999999999999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 036661          370 GQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC  407 (615)
Q Consensus       370 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  407 (615)
                      ++.|+.++|.+++++|.+.+..|+..+|+.++..|...
T Consensus       186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999888753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.3e-25  Score=225.16  Aligned_cols=441  Identities=9%  Similarity=-0.077  Sum_probs=229.3

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHH
Q 036661          121 ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAY  200 (615)
Q Consensus       121 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (615)
                      ..|......+.+.|++++|++.|+++.+..  |+...+..+..++...|+++.|...++.+++.+ +.+..++..+..+|
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence            345666777888888888888888888754  677888888888888888888888888888764 33556778888888


Q ss_pred             HccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhH
Q 036661          201 AKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRL  279 (615)
Q Consensus       201 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  279 (615)
                      ...|++++|...|+++....| +......++..+........+.+.+..+...+..|+...+..-.........      
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------  157 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN------  157 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C------
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC------
Confidence            888888888888887766533 3334444444333322222333333222222211221111110000000000      


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CcccHHHHHHHHHh---cCChhHHHHHHHHHHH---
Q 036661          280 VHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDR-TRVSWTAMISGYAQ---KGDLDEALRLFFAMEA---  352 (615)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~---  352 (615)
                                .|+......    +..........   ..+..+ +...+......+..   .|++++|...|+++.+   
T Consensus       158 ----------~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  220 (514)
T 2gw1_A          158 ----------LPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE  220 (514)
T ss_dssp             ----------CCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred             ----------CchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Confidence                      011100000    00000000000   000001 11122222222222   4555555555555544   


Q ss_pred             --CCC--------CCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 036661          353 --AGE--------VPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE  422 (615)
Q Consensus       353 --~~~--------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  422 (615)
                        ...        +.+...+..+...+...|+++.|...++.+.+....  ...+..+...+...|++++|...++++..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  298 (514)
T 2gw1_A          221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALK  298 (514)
T ss_dssp             HHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHT
T ss_pred             hhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence              210        112234444455555555555555555555554322  55555555555566666665555554433


Q ss_pred             ---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHH
Q 036661          423 ---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHY  499 (615)
Q Consensus       423 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  499 (615)
                         .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.  .+.+...+
T Consensus       299 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~  375 (514)
T 2gw1_A          299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVP  375 (514)
T ss_dssp             TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHH
T ss_pred             cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHH
Confidence               234455666666666666666666666666542 223445555666666666666666666666542  12234455


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHH---hCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661          500 SCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKI---HRNIEIGEYVAYRLFELEPHSAAPYVEM  568 (615)
Q Consensus       500 ~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l  568 (615)
                      ..++.++.+.|++++|.+.++++.    ..++    ...+..++..+..   .|++++|...++++++.+|+++.++..+
T Consensus       376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  455 (514)
T 2gw1_A          376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL  455 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            556666666666666666666553    1111    2255556666666   6666666666666666666666666666


Q ss_pred             HHHHHccCChHHHHHHHHHHHhcC
Q 036661          569 ANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       569 ~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      +.+|.+.|++++|.+.++++.+..
T Consensus       456 a~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          456 AQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhc
Confidence            666666666666666666665544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.8e-25  Score=225.43  Aligned_cols=409  Identities=11%  Similarity=-0.042  Sum_probs=288.5

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHh
Q 036661          156 VTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCT  234 (615)
Q Consensus       156 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~  234 (615)
                      ..+......+...|+++.|...++.+++..  |+..++..+..+|.+.|++++|...|+++.+..| +..+|..+..++.
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            345556677888999999999999999876  6888899999999999999999999998776644 5678888899999


Q ss_pred             cCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHH
Q 036661          235 YGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARF  314 (615)
Q Consensus       235 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  314 (615)
                      ..|++++|+..|+++...+. ++.......+..+........+...+..+...+..|+......-.             .
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------~  150 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK-------------E  150 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred             HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh-------------H
Confidence            99999999999999988753 333333333333322222222222222222211111111000000             0


Q ss_pred             HHhcc-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhc---ccchhhHHHHHHHHHHh---
Q 036661          315 LFDGM-CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCG---QSGALELGKWFDNYACS---  387 (615)
Q Consensus       315 ~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~---  387 (615)
                      ..... ..|+..    .+..+..........      .....+.+...+......+.   ..|+++.|..+++.+.+   
T Consensus       151 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  220 (514)
T 2gw1_A          151 RKDKQENLPSVT----SMASFFGIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE  220 (514)
T ss_dssp             ------CCCCHH----HHHHHHTTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccCCchhH----HHHHHHhhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Confidence            00000 000100    111111111100000      00000122334444443333   48999999999999887   


Q ss_pred             --cCC--------CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036661          388 --GGL--------KDNVMVCNALIDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELD  455 (615)
Q Consensus       388 --~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  455 (615)
                        ...        +.+..++..+...+...|++++|...++++..  |+...+..+..++...|++++|...++++.+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  300 (514)
T 2gw1_A          221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD  300 (514)
T ss_dssp             HHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred             hhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC
Confidence              311        23456788889999999999999999998754  447788999999999999999999999999863


Q ss_pred             CCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHH
Q 036661          456 LRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGT  533 (615)
Q Consensus       456 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~  533 (615)
                       +.+...+..+...+...|++++|...++++.+.  .+.+...+..++.++...|++++|.+.++++.  .+.+...+..
T Consensus       301 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  377 (514)
T 2gw1_A          301 -SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF  377 (514)
T ss_dssp             -TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHH
Confidence             445678889999999999999999999999853  23356788889999999999999999999986  3445678888


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhccCCCCCC------ChHhHHHHHHc---cCChHHHHHHHHHHHhcCc
Q 036661          534 LLCACKIHRNIEIGEYVAYRLFELEPHSAA------PYVEMANIYAL---GGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~  593 (615)
                      ++..+...|++++|...++++++..|+++.      .+..++.+|..   .|++++|.+.++++.+...
T Consensus       378 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~  446 (514)
T 2gw1_A          378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP  446 (514)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999998876      89999999999   9999999999999987653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=4.1e-23  Score=207.78  Aligned_cols=337  Identities=10%  Similarity=0.012  Sum_probs=238.8

Q ss_pred             CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHH
Q 036661          220 LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTL  299 (615)
Q Consensus       220 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  299 (615)
                      +.+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|...+..+.+.+ +.        
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~--------   92 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MD--------   92 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT--------
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC--------
Confidence            3456677888888888888888888888887643 2334444444444555555555555555544443 22        


Q ss_pred             HHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHH----------
Q 036661          300 ISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDL----VTVLSM----------  365 (615)
Q Consensus       300 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l----------  365 (615)
                                             +...+..+...|.+.|++++|...|+++.+..  |+.    ..+..+          
T Consensus        93 -----------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~  147 (450)
T 2y4t_A           93 -----------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLR  147 (450)
T ss_dssp             -----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHH
Confidence                                   33344445555555555555555555554432  221    222222          


Q ss_pred             --HHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCC
Q 036661          366 --ISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGE  440 (615)
Q Consensus       366 --l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~  440 (615)
                        ...+...|+++.|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++..   .+..+|..++.+|...|+
T Consensus       148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  226 (450)
T 2y4t_A          148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD  226 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence              334666777788888887777654 45667778888888888888888888887654   467788888999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCC-HHHHHHH------------HHHhhccCchHHHHHHHHHHHHhhCCCCC-----hhHHHHH
Q 036661          441 FVEALDLFHQMMELDLRPN-RVTFLAV------------LQACTHAGFLEKGWGYFNLMTKVYQVNPE-----LNHYSCM  502 (615)
Q Consensus       441 ~~~a~~~~~~~~~~~~~p~-~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l  502 (615)
                      +++|+..++++.+.  .|+ ...+..+            ...+...|++++|..+|+++.+.   .|+     ...+..+
T Consensus       227 ~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l  301 (450)
T 2y4t_A          227 HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERI  301 (450)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHH
Confidence            99999999998876  444 3444444            77889999999999999999853   444     3478888


Q ss_pred             HHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH-----------
Q 036661          503 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA-----------  569 (615)
Q Consensus       503 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~-----------  569 (615)
                      +.++.+.|++++|.+.++++.  .+.+...+..++.+|...|++++|...++++++++|+++.++..++           
T Consensus       302 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  381 (450)
T 2y4t_A          302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK  381 (450)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence            999999999999999999986  4446788999999999999999999999999999999999999998           


Q ss_pred             -HHHHccC-----ChHHHHHHHHH-HHhcCcccCC
Q 036661          570 -NIYALGG-----RWDGVANLRTM-MKRNQVKKFP  597 (615)
Q Consensus       570 -~~~~~~g-----~~~~A~~~~~~-~~~~~~~~~~  597 (615)
                       +.|...|     +.+++.+.+++ ..+..+.+.+
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~  416 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ  416 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCC
Confidence             4466666     56777888886 4555544433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=4.5e-23  Score=212.61  Aligned_cols=421  Identities=10%  Similarity=-0.003  Sum_probs=201.2

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHH
Q 036661          121 ASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAY  200 (615)
Q Consensus       121 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (615)
                      ..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|+++.|.+.++.+++.. +.+..++..+..++
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  103 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence            456667777777788888888887777653 2355667777777777777777777777777664 33556777777788


Q ss_pred             HccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHC------CCCCCHHhHHHHHHhccCchhh
Q 036661          201 AKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYD------GFRPDVTTVVSLLSSCVCPEAL  274 (615)
Q Consensus       201 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~  274 (615)
                      ...|++++|...|+.+.. .|+  ..+..+..+...+....+...++++...      ...|+.......          
T Consensus       104 ~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------  170 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVLSL-NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF----------  170 (537)
T ss_dssp             HHHTCHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHH----------
T ss_pred             HHcCCHHHHHHHHHHHhc-CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHH----------
Confidence            888888888888764332 222  1112223333344456677777666432      122333332222          


Q ss_pred             hhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcc---cHHHHHHHHHh--------cCChhHH
Q 036661          275 VQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRV---SWTAMISGYAQ--------KGDLDEA  343 (615)
Q Consensus       275 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~--------~~~~~~a  343 (615)
                                                   ....+.+.+...+......+..   ....+...+..        .|++++|
T Consensus       171 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A  221 (537)
T 3fp2_A          171 -----------------------------FGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS  221 (537)
T ss_dssp             -----------------------------HHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred             -----------------------------HHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence                                         2223333333333222222111   11111111111        1234444


Q ss_pred             HHHHHHHHHCCCCCCH-------HHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 036661          344 LRLFFAMEAAGEVPDL-------VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAREL  416 (615)
Q Consensus       344 ~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  416 (615)
                      ..+++++.+.. +.+.       .++..+...+...|+++.|...++.+.+..  |+...+..+...+...|++++|.+.
T Consensus       222 ~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~  298 (537)
T 3fp2_A          222 TDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKF  298 (537)
T ss_dssp             HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred             HHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHH
Confidence            44444444321 1111       122233333444444444444444444432  2234444444444445555555544


Q ss_pred             HhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC
Q 036661          417 FYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVN  493 (615)
Q Consensus       417 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  493 (615)
                      ++++..   .+..+|..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|..+++++.+.  .+
T Consensus       299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~  375 (537)
T 3fp2_A          299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FP  375 (537)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence            444332   233445555555555555555555555555432 122344444555555555555555555555432  12


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CC----ChhhHHHHHHHHHHh----------CChhHHHHHHHHHh
Q 036661          494 PELNHYSCMADLLGRKGKLKEALDFVQSMP-I---KS----DAGIWGTLLCACKIH----------RNIEIGEYVAYRLF  555 (615)
Q Consensus       494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p----~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~  555 (615)
                      .+...+..++.++...|++++|.+.++++. .   .+    ....+......+...          |++++|...+++++
T Consensus       376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  455 (537)
T 3fp2_A          376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC  455 (537)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence            223344455555555555555555555442 0   00    011122233344444          55555555555555


Q ss_pred             ccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          556 ELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       556 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      +.+|+++.++..++.+|...|++++|.+.++++.+.
T Consensus       456 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            555555555555555555555555555555555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.91  E-value=1.2e-21  Score=202.04  Aligned_cols=446  Identities=10%  Similarity=-0.016  Sum_probs=276.4

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhh
Q 036661           21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYA  100 (615)
Q Consensus        21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (615)
                      .|..+...+.+.|++++|++.|+++.+..+. ++..+..+..++...|++++|...++.+++.+ +.+...+..+..++.
T Consensus        27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~  104 (537)
T 3fp2_A           27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence            5666677777777777777777777765432 55666667777777777777777777776654 344555555666666


Q ss_pred             cCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 036661          101 KCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSF  180 (615)
Q Consensus       101 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  180 (615)
                      ..|++++|...|+.+ ..+....+..+..+...+....|.+.++.+....  |+                          
T Consensus       105 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~--------------------------  155 (537)
T 3fp2_A          105 SLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EG--------------------------  155 (537)
T ss_dssp             HHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred             HcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cc--------------------------
Confidence            666666666655422 1111112222333333333444555444443211  00                          


Q ss_pred             HHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcc-hHHHHHHHHhcC--------CChhhHHHHHHHHHH
Q 036661          181 GIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVV-SWNSIIGGCTYG--------DKFDDSLNFYRHMIY  251 (615)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~--------~~~~~a~~~~~~m~~  251 (615)
                           ..+........+..+....+.+.+...+.......+... ....+...+...        |++++|+.+++++.+
T Consensus       156 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~  230 (537)
T 3fp2_A          156 -----RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS  230 (537)
T ss_dssp             --------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             -----ccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence                 000111112233334444455554444444332111111 111111111111        133333333333332


Q ss_pred             CCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHH
Q 036661          252 DGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMI  331 (615)
Q Consensus       252 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll  331 (615)
                                                         .. +.+...+..+.                        .++..+.
T Consensus       231 -----------------------------------~~-p~~~~~~~~~~------------------------~~~~~~g  250 (537)
T 3fp2_A          231 -----------------------------------AN-TVDDPLRENAA------------------------LALCYTG  250 (537)
T ss_dssp             --------------------------------------CCCHHHHHHHH------------------------HHHHHHH
T ss_pred             -----------------------------------HC-CCcchhhHHHH------------------------HHHHHHH
Confidence                                               21 11111111111                        1234455


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 036661          332 SGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG  411 (615)
Q Consensus       332 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  411 (615)
                      ..+...|++++|...+++..+.  .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|+++
T Consensus       251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  327 (537)
T 3fp2_A          251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK  327 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence            5677778888888888887775  3557777788888888888888888888887765 456778888889999999999


Q ss_pred             HHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 036661          412 DARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTK  488 (615)
Q Consensus       412 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  488 (615)
                      +|.+.++++..   .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus       328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  406 (537)
T 3fp2_A          328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR  406 (537)
T ss_dssp             HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999887654   356788899999999999999999999999873 44557888889999999999999999999875


Q ss_pred             hhCCCCC----hhHHHHHHHHHHhc----------CChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHH
Q 036661          489 VYQVNPE----LNHYSCMADLLGRK----------GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAY  552 (615)
Q Consensus       489 ~~~~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~  552 (615)
                      ...-.+.    ...+..++.++.+.          |++++|...++++.  .+.+...+..++..+...|++++|...++
T Consensus       407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  486 (537)
T 3fp2_A          407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE  486 (537)
T ss_dssp             HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            4322222    12345566778888          99999999999987  44456788899999999999999999999


Q ss_pred             HHhccCCCCCCChH
Q 036661          553 RLFELEPHSAAPYV  566 (615)
Q Consensus       553 ~~~~~~p~~~~~~~  566 (615)
                      +++++.|+++....
T Consensus       487 ~al~~~~~~~~~~~  500 (537)
T 3fp2_A          487 DSAILARTMDEKLQ  500 (537)
T ss_dssp             HHHHHC--CHHHHH
T ss_pred             HHHHhCCCcHHHHH
Confidence            99999998765443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=7.3e-22  Score=198.64  Aligned_cols=377  Identities=10%  Similarity=-0.034  Sum_probs=255.5

Q ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC-CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCC
Q 036661          176 SVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG-LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGF  254 (615)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  254 (615)
                      ..+....... +.+...+..+...+.+.|++++|..+|+++... +.+..+|..+..++...|++++|+..|+++.+.+.
T Consensus        13 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p   91 (450)
T 2y4t_A           13 LGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM   91 (450)
T ss_dssp             -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            3444444332 346778999999999999999999999998765 44688899999999999999999999999998752


Q ss_pred             CCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHH
Q 036661          255 RPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDV---SVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMI  331 (615)
Q Consensus       255 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll  331 (615)
                       .+...+..+...+...|+++.|...++.+.+.. +.+.   ..+..+...+...                   .+..+.
T Consensus        92 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a  150 (450)
T 2y4t_A           92 -DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQA  150 (450)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHH
T ss_pred             -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHH
Confidence             346677777777888888888888888777653 2223   4444443332111                   112233


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 036661          332 SGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG  411 (615)
Q Consensus       332 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  411 (615)
                      ..+...|++++|+..|+++.+.. +.+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..+|...|+++
T Consensus       151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~  228 (450)
T 2y4t_A          151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHE  228 (450)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence            44556666666666666666542 3455566666666666677777777666666543 445566666777777777777


Q ss_pred             HHHHHHhcCCC---CChHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhh
Q 036661          412 DARELFYALPE---KTVVSWTTM------------IAGCALNGEFVEALDLFHQMMELDLRPN-----RVTFLAVLQACT  471 (615)
Q Consensus       412 ~A~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~  471 (615)
                      +|...|+++..   .+...+..+            +..+...|++++|...++++.+.  .|+     ...+..+..++.
T Consensus       229 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~  306 (450)
T 2y4t_A          229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFS  306 (450)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHH
Confidence            77777766543   233333333            77888899999999999999885  444     346777888889


Q ss_pred             ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHHHH------------
Q 036661          472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLLCA------------  537 (615)
Q Consensus       472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~------------  537 (615)
                      +.|++++|+..++++.+.  .+.+...+..++.+|...|++++|.+.++++. ..|+ ...+..+..+            
T Consensus       307 ~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~  384 (450)
T 2y4t_A          307 KDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY  384 (450)
T ss_dssp             TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhH
Confidence            999999999999988753  23356788889999999999999999998876 4554 4455555532            


Q ss_pred             HHHhC-----ChhHHHHHHHH-HhccCCCCCC----------ChHhHHHHHHccCChHH
Q 036661          538 CKIHR-----NIEIGEYVAYR-LFELEPHSAA----------PYVEMANIYALGGRWDG  580 (615)
Q Consensus       538 ~~~~~-----~~~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~  580 (615)
                      |...|     +.+++.+.+++ +++..|++..          .+..++.+|...|+.++
T Consensus       385 y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~  443 (450)
T 2y4t_A          385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM  443 (450)
T ss_dssp             GGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred             HHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            22233     66788888886 7888887543          23344555555555444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=7.7e-20  Score=177.74  Aligned_cols=304  Identities=11%  Similarity=0.029  Sum_probs=170.2

Q ss_pred             HhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHH
Q 036661          259 TTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYA  335 (615)
Q Consensus       259 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~  335 (615)
                      ..+..+...+...|+++.|...+..+.+.. +.+..++..+...+...|++++|...|+.+   .+.+...+..+...+.
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            444555555566666666666666666543 334555566666666666666666666554   2223445555666666


Q ss_pred             hcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 036661          336 QKGDLDEALRLFFAMEAAGEVP----DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG  411 (615)
Q Consensus       336 ~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  411 (615)
                      ..|++++|...+++..+.  .|    +...+..+....       .                ...+..+...+...|+++
T Consensus        83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~  137 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYT  137 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHH
T ss_pred             HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHH
Confidence            666666666666665553  23    122222221000       0                000111245556666666


Q ss_pred             HHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 036661          412 DARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTK  488 (615)
Q Consensus       412 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  488 (615)
                      +|.+.++++..   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus       138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  216 (359)
T 3ieg_A          138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK  216 (359)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            66666665433   344556666666666666666666666666542 33445666666666666666666666666653


Q ss_pred             hhCCCCC-hhHHH------------HHHHHHHhcCChHHHHHHHHhCC-CCCC-h----hhHHHHHHHHHHhCChhHHHH
Q 036661          489 VYQVNPE-LNHYS------------CMADLLGRKGKLKEALDFVQSMP-IKSD-A----GIWGTLLCACKIHRNIEIGEY  549 (615)
Q Consensus       489 ~~~~~~~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~----~~~~~l~~~~~~~~~~~~A~~  549 (615)
                      .   .|+ ...+.            .++..+.+.|++++|.+.++++. ..|+ .    ..+..++.++...|++++|..
T Consensus       217 ~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  293 (359)
T 3ieg_A          217 L---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR  293 (359)
T ss_dssp             H---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             h---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            2   222 12111            22555666677777777666654 2232 2    123345566666677777777


Q ss_pred             HHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          550 VAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       550 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      .++++++.+|+++.++..++.+|...|++++|.+.++++.+..
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            7777777777666677777777777777777777776666544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=7.2e-20  Score=177.96  Aligned_cols=323  Identities=9%  Similarity=-0.017  Sum_probs=243.0

Q ss_pred             cchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHH
Q 036661          223 VVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISM  302 (615)
Q Consensus       223 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  302 (615)
                      +..+..+...+...|++++|+..|+++.+... .+...+..+...+...|+++.|...++.+.+.. +.+...+..+...
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            45677788899999999999999999988642 457788888899999999999999999999875 4567889999999


Q ss_pred             HHhcCCHHHHHHHHhccCCCCc------ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhh
Q 036661          303 YSKCGDIDSARFLFDGMCDRTR------VSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALE  376 (615)
Q Consensus       303 ~~~~~~~~~a~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  376 (615)
                      +...|++++|...|+.....++      ..+..+...+.                       ...+..+...+...|+++
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~  137 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT  137 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence            9999999999999999844333      22322211000                       011222334445556666


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 036661          377 LGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMME  453 (615)
Q Consensus       377 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  453 (615)
                      .|...++.+.+.. +.+...+..+...+...|++++|...++++..   .+..++..+...+...|++++|...+++..+
T Consensus       138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  216 (359)
T 3ieg_A          138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK  216 (359)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6666666655543 44556666777777777777777777776544   3566778888888888888888888888887


Q ss_pred             cCCCCCHHHHH------------HHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-----hHHHHHHHHHHhcCChHHHH
Q 036661          454 LDLRPNRVTFL------------AVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-----NHYSCMADLLGRKGKLKEAL  516 (615)
Q Consensus       454 ~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~  516 (615)
                      .. +.+...+.            .+...+...|++++|...++++.+.   .|+.     ..+..++.++...|++++|.
T Consensus       217 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~  292 (359)
T 3ieg_A          217 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAI  292 (359)
T ss_dssp             HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence            53 22333332            2366788999999999999999864   3432     23556889999999999999


Q ss_pred             HHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661          517 DFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG  575 (615)
Q Consensus       517 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  575 (615)
                      +.++++.  .+.+...+..++..+...|++++|...++++++++|+++..+..+..++...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            9999987  4446778899999999999999999999999999999999888888876544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.86  E-value=1.6e-19  Score=173.24  Aligned_cols=287  Identities=11%  Similarity=0.017  Sum_probs=230.2

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036661          290 DLDVSVINTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMI  366 (615)
Q Consensus       290 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll  366 (615)
                      +.+...+..+...+...|++++|.++|+++   .+.+...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            455666777888888889999999988887   33355567778888888999999999999888763 44566777788


Q ss_pred             Hhhcccc-hhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChH
Q 036661          367 SGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFV  442 (615)
Q Consensus       367 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~  442 (615)
                      ..+...| +++.|...++.+.+.. +.+...+..+...+...|++++|.+.++++..   .+...+..+...+...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence            8888888 8899999998888765 45567788888999999999999999887654   34567777888999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCC-------CCChhHHHHHHHHHHhcCChHHH
Q 036661          443 EALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV-------NPELNHYSCMADLLGRKGKLKEA  515 (615)
Q Consensus       443 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A  515 (615)
                      +|...++++.+.. +.+...+..+...+...|++++|...++++.+...-       +.....+..++.++...|++++|
T Consensus       177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            9999999998863 445678888888999999999999999988754211       33356788899999999999999


Q ss_pred             HHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH-HccCChH
Q 036661          516 LDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY-ALGGRWD  579 (615)
Q Consensus       516 ~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~  579 (615)
                      .+.++++.  .+.+...+..++..+...|++++|...++++++++|+++..+..++.++ ...|+.+
T Consensus       256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            99998876  3445668888889999999999999999999999999999999999988 4556543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.84  E-value=5.8e-16  Score=163.83  Aligned_cols=383  Identities=12%  Similarity=0.084  Sum_probs=292.2

Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcC--CCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHH
Q 036661          154 DFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGV--DADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIG  231 (615)
Q Consensus       154 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~  231 (615)
                      ++.-.....+++...|.+.++.++++...-.+-  ..+....+.++.+..+. +..+..++..++..  .+   ...+..
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--~d---~~eIA~ 1057 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--YD---APDIAN 1057 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--cc---HHHHHH
Confidence            344456677888889999999999998884321  12345666677777776 55666666665551  11   344677


Q ss_pred             HHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHH
Q 036661          232 GCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDS  311 (615)
Q Consensus       232 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  311 (615)
                      .+...|.+++|..+|++..     -.......++.   ..+++++|.++....      .++.+|..+..++...|++++
T Consensus      1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A         1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred             HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence            7888999999999999862     11122233332   567788888887754      347788999999999999999


Q ss_pred             HHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCC
Q 036661          312 ARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLK  391 (615)
Q Consensus       312 a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  391 (615)
                      |...|.+.  .|...|..++..+.+.|++++|.+.+....+..  +++...+.++.+|++.++++....+..       .
T Consensus      1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~ 1192 (1630)
T 1xi4_A         1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------G 1192 (1630)
T ss_pred             HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------C
Confidence            99999775  567788889999999999999999998877654  333333358888888888886444431       4


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 036661          392 DNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACT  471 (615)
Q Consensus       392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  471 (615)
                      ++...+..+...|...|++++|..+|...     ..|..++.++.+.|++++|.+.+++.      .+..+|..+..+|.
T Consensus      1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A         1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence            45566777999999999999999999986     47999999999999999999999876      35588988999999


Q ss_pred             ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHH--hCChhHH
Q 036661          472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKI--HRNIEIG  547 (615)
Q Consensus       472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~--~~~~~~A  547 (615)
                      ..|++..|......+      ..++..+..++..|.+.|.+++|+.+++... ..| ....+..+...+.+  -++..++
T Consensus      1262 e~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A         1262 DGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred             hhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence            999999988766543      3456667789999999999999999998876 333 34466666666655  4578888


Q ss_pred             HHHHHHHhccCC-----CCCCChHhHHHHHHccCChHHHHHH
Q 036661          548 EYVAYRLFELEP-----HSAAPYVEMANIYALGGRWDGVANL  584 (615)
Q Consensus       548 ~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~  584 (615)
                      .+.|.....+.|     +++..|..++.+|.+.|+|++|...
T Consensus      1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A         1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred             HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            889998888887     7788999999999999999999843

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=5.9e-19  Score=169.31  Aligned_cols=268  Identities=10%  Similarity=0.030  Sum_probs=231.1

Q ss_pred             CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHH
Q 036661          321 DRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNAL  400 (615)
Q Consensus       321 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  400 (615)
                      +.+...+..+...+...|++++|+++++++.... +.+...+..++..+...|+++.|..+++.+.+.. +.+...+..+
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            3466678888999999999999999999998764 4445566667788889999999999999998865 5667888899


Q ss_pred             HHHHHhcC-ChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCch
Q 036661          401 IDMYSKCG-SIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFL  476 (615)
Q Consensus       401 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~  476 (615)
                      ...+...| ++++|.+.|+++..   .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence            99999999 99999999998665   456789999999999999999999999999874 33456777789999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----------CCChhhHHHHHHHHHHhCChh
Q 036661          477 EKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-I----------KSDAGIWGTLLCACKIHRNIE  545 (615)
Q Consensus       477 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~~~~~  545 (615)
                      ++|...++++.+.  .+.+...+..++.++...|++++|...++++. .          +.....+..++.++...|+++
T Consensus       176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            9999999999852  34456788899999999999999999998875 1          333568889999999999999


Q ss_pred             HHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          546 IGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       546 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +|+..++++++.+|+++.++..++.+|...|++++|.+.++++.+..+
T Consensus       254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (330)
T 3hym_B          254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR  301 (330)
T ss_dssp             HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence            999999999999999999999999999999999999999998877554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.83  E-value=2.3e-15  Score=159.39  Aligned_cols=512  Identities=11%  Similarity=0.065  Sum_probs=263.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCcccHHHHHHHHH---------------------------hcCCchhH
Q 036661           23 NSQIREAVDKNEAHKALLLFRRMKKNDIE--PNNLTFPFIAKACA---------------------------KLSDFLYS   73 (615)
Q Consensus        23 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~---------------------------~~~~~~~a   73 (615)
                      ...+++|+..|.+.+|++++++..-.+..  -+...-+.++.+..                           ..|.+++|
T Consensus       989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEA 1068 (1630)
T 1xi4_A          989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEA 1068 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHH
Confidence            56789999999999999999999843210  12233333443333                           33444444


Q ss_pred             hHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcC
Q 036661           74 QMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQA  153 (615)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  153 (615)
                      ..+|+...     ......+.++   -..+++++|.++.+++.  +..+|..+..++...|++++|++.|.+.      -
T Consensus      1069 f~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------d 1132 (1630)
T 1xi4_A         1069 FAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------D 1132 (1630)
T ss_pred             HHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------C
Confidence            44444421     1111111111   13344555555544442  2445556666666666666666666442      2


Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHH
Q 036661          154 DFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGC  233 (615)
Q Consensus       154 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~  233 (615)
                      |...|..++.++.+.|+++++.+.+...++..  +++...+.++.+|.+.+++++...+.   .  .++...|..+...|
T Consensus      1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~--~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A         1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N--GPNNAHIQQVGDRC 1205 (1630)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h--CCCHHHHHHHHHHH
Confidence            45555556666666666666666666555543  22223334566666666655433332   1  33444555555666


Q ss_pred             hcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHH
Q 036661          234 TYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSAR  313 (615)
Q Consensus       234 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  313 (615)
                      ...|++++|..+|...         ..|..+...+.+.|+++.|.+.++..      .+..+|..+..+|...|++..|.
T Consensus      1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A         1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred             HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHH
Confidence            6666666666666553         25556666666666666666666554      23455666666666666666666


Q ss_pred             HHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhc--ccchhhHHHHHHHHHHhcCCC
Q 036661          314 FLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCG--QSGALELGKWFDNYACSGGLK  391 (615)
Q Consensus       314 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~  391 (615)
                      ..... ...+...+..++..|.+.|.+++|+.+++...... +.....|+-+...++  +.++..++.+.|..-  .+++
T Consensus      1271 ~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~ 1346 (1630)
T 1xi4_A         1271 MCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIP 1346 (1630)
T ss_pred             HHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccc
Confidence            65543 22233445566777777777777777776655432 222233333333333  333444444443322  1222


Q ss_pred             C------chHHHHHHHHHHHhcCChHHHHHHHhcCC--------------C-CChHHHHHHHHHHHhcC-----------
Q 036661          392 D------NVMVCNALIDMYSKCGSIGDARELFYALP--------------E-KTVVSWTTMIAGCALNG-----------  439 (615)
Q Consensus       392 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~-~~~~~~~~l~~~~~~~~-----------  439 (615)
                      +      ...+|..++..|.+.|+++.|...+-+-.              . .|+..|...+.-|...+           
T Consensus      1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l 1426 (1630)
T 1xi4_A         1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVL 1426 (1630)
T ss_pred             hHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHh
Confidence            2      45567777777777777777763332221              1 34445555555554433           


Q ss_pred             ----ChHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHh------hC-CCCChhH
Q 036661          440 ----EFVEALDLFHQMMEL----------DLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKV------YQ-VNPELNH  498 (615)
Q Consensus       440 ----~~~~a~~~~~~~~~~----------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~  498 (615)
                          |++++.++|...-..          ....+...-..+...+....+++.-..-.+....-      .. -+.+..-
T Consensus      1427 ~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~ 1506 (1630)
T 1xi4_A         1427 SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIE 1506 (1630)
T ss_pred             hhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHH
Confidence                444444444311000          00111111122222333333332211111110000      00 0111112


Q ss_pred             HHHHHHHHH-hcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCC
Q 036661          499 YSCMADLLG-RKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGR  577 (615)
Q Consensus       499 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  577 (615)
                      +..++..+. +.|+|..|.+++++..      .|...+.+..++|+.+.+++++.-..+.  .+.++|....-++...=+
T Consensus      1507 frrIAa~ly~~n~~~~~ai~l~k~d~------l~~dAm~~a~~S~d~e~~e~ll~~F~~~--~~~E~f~a~Ly~cy~l~~ 1578 (1630)
T 1xi4_A         1507 FRRIAAYLFKGNNRWKQSVELCKKDS------LYKDAMQYASESKDTELAEELLQWFLQE--EKRECFGACLFTCYDLLR 1578 (1630)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHhcc------CHHHHHHHHHHcCCHHHHHHHHHHHHhc--CChhHHHHHHHHHhccCC
Confidence            344444433 4488888888888755      4555677777888888888887777766  445667766666666666


Q ss_pred             hHHHHHH
Q 036661          578 WDGVANL  584 (615)
Q Consensus       578 ~~~A~~~  584 (615)
                      +|-+.++
T Consensus      1579 pd~vle~ 1585 (1630)
T 1xi4_A         1579 PDVVLET 1585 (1630)
T ss_pred             chHHHHH
Confidence            6666553

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.83  E-value=2.4e-17  Score=167.02  Aligned_cols=366  Identities=11%  Similarity=-0.023  Sum_probs=258.6

Q ss_pred             ccchHHHHHHHHHc----cCCHHHHHHHHHhcccCCCCcchHHHHHHHHhc----CCChhhHHHHHHHHHHCCCCCCHHh
Q 036661          189 DVSVCNTWISAYAK----CNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTY----GDKFDDSLNFYRHMIYDGFRPDVTT  260 (615)
Q Consensus       189 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~  260 (615)
                      +...+..+...|..    .+++++|...|++..+ ..+...+..+...|..    .+++++|++.|++..+.|   +...
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a  113 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAE-QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQA  113 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            44444455555554    5566666666655543 2344455555555555    566666666666665543   3333


Q ss_pred             HHHHHHhccC----chhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHhccCC-CCcccHHHHH
Q 036661          261 VVSLLSSCVC----PEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSK----CGDIDSARFLFDGMCD-RTRVSWTAMI  331 (615)
Q Consensus       261 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~ll  331 (615)
                      +..+...+..    .++.+.|...++...+.|   ++..+..|...|..    .++.++|.+.|++..+ .+...+..+.
T Consensus       114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg  190 (490)
T 2xm6_A          114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLG  190 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            3444444433    556666666666666554   44556667777766    6788888888877633 3556777777


Q ss_pred             HHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcc----cchhhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 036661          332 SGYAQ----KGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNALIDM  403 (615)
Q Consensus       332 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  403 (615)
                      ..|..    .+++++|...|++..+.|   +...+..+...+..    .++.++|..+++...+.+   +...+..+...
T Consensus       191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~  264 (490)
T 2xm6_A          191 YMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYI  264 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred             HHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence            77777    788888888888888765   44555555555554    678888888888887764   34556667777


Q ss_pred             HHh----cCChHHHHHHHhcCCC-CChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 036661          404 YSK----CGSIGDARELFYALPE-KTVVSWTTMIAGCALN-----GEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA  473 (615)
Q Consensus       404 ~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  473 (615)
                      |..    .++.++|.+.|++..+ .++..+..+...|...     +++++|+..+++..+.|   +...+..+...|...
T Consensus       265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~  341 (490)
T 2xm6_A          265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL  341 (490)
T ss_dssp             HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence            776    7899999999987665 4667788888888887     89999999999998865   345666677777665


Q ss_pred             C---chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHH----hC
Q 036661          474 G---FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIWGTLLCACKI----HR  542 (615)
Q Consensus       474 ~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~  542 (615)
                      |   ++++|.++|++..+.    .+...+..+..+|..    .+++++|.++|++.....+...+..+...|..    .+
T Consensus       342 g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~  417 (490)
T 2xm6_A          342 GSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER  417 (490)
T ss_dssp             CCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred             CCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence            6   789999999998853    456778888999988    89999999999988744467788888888887    78


Q ss_pred             ChhHHHHHHHHHhccCCC---CCCChHhHHHHHHc
Q 036661          543 NIEIGEYVAYRLFELEPH---SAAPYVEMANIYAL  574 (615)
Q Consensus       543 ~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~  574 (615)
                      +.++|...++++.+.+|+   ++.....++.++..
T Consensus       418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK  452 (490)
T ss_dssp             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred             CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence            999999999999999854   67777777776654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.82  E-value=4.6e-19  Score=172.95  Aligned_cols=283  Identities=13%  Similarity=0.014  Sum_probs=218.5

Q ss_pred             HhcCCHHHHHH-HHhccC---CC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchh
Q 036661          304 SKCGDIDSARF-LFDGMC---DR----TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGAL  375 (615)
Q Consensus       304 ~~~~~~~~a~~-~~~~~~---~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  375 (615)
                      ...|++++|.. .|++..   +.    +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus        36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~  114 (368)
T 1fch_A           36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE  114 (368)
T ss_dssp             ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence            34567777777 777541   11    34567778888888888888888888888763 45667777888888888888


Q ss_pred             hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChHHHHH---------------HHHHHHh
Q 036661          376 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-TVVSWTT---------------MIAGCAL  437 (615)
Q Consensus       376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~~  437 (615)
                      +.|...++.+.+.. +.+..++..+...|...|++++|.+.++++..  | +...+..               .+..+..
T Consensus       115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (368)
T 1fch_A          115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS  193 (368)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence            88888888888765 55677888888888888888888888886554  1 2222211               1333348


Q ss_pred             cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036661          438 NGEFVEALDLFHQMMELDLRP-NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL  516 (615)
Q Consensus       438 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  516 (615)
                      .|++++|...++++.+..... +..++..+...+...|++++|...++++.+.  .+.+...+..++.++.+.|++++|.
T Consensus       194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            899999999999999863211 4788999999999999999999999999853  2345678999999999999999999


Q ss_pred             HHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC-----------CCChHhHHHHHHccCChHHHHH
Q 036661          517 DFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS-----------AAPYVEMANIYALGGRWDGVAN  583 (615)
Q Consensus       517 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~  583 (615)
                      +.++++.  .+.+...+..++.++...|++++|...+++++++.|++           +.+|..++.+|...|++++|..
T Consensus       272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence            9999986  44457788999999999999999999999999999887           7889999999999999999999


Q ss_pred             HHHHHHh
Q 036661          584 LRTMMKR  590 (615)
Q Consensus       584 ~~~~~~~  590 (615)
                      ++++..+
T Consensus       352 ~~~~~l~  358 (368)
T 1fch_A          352 ADARDLS  358 (368)
T ss_dssp             HHTTCHH
T ss_pred             hHHHHHH
Confidence            9875443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.82  E-value=8.2e-17  Score=164.85  Aligned_cols=414  Identities=8%  Similarity=-0.016  Sum_probs=277.1

Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHH
Q 036661          154 DFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGC  233 (615)
Q Consensus       154 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~  233 (615)
                      +...|..++.. ...|+++.|..+++.+++.. +.+...|..++..+.+.|++++|..+|++.....|+...|..++...
T Consensus        12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~   89 (530)
T 2ooe_A           12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV   89 (530)
T ss_dssp             CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            56677777774 67788888888888888752 34566788888888888888888888888887777777777766533


Q ss_pred             -hcCCChhhHHH----HHHHHHHC-CCCCC-HHhHHHHHHhcc---------CchhhhhhhHHHHHHHHhcCCCChhHHH
Q 036661          234 -TYGDKFDDSLN----FYRHMIYD-GFRPD-VTTVVSLLSSCV---------CPEALVQGRLVHSHGIHYGFDLDVSVIN  297 (615)
Q Consensus       234 -~~~~~~~~a~~----~~~~m~~~-~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~  297 (615)
                       ...|+.++|.+    +|++.+.. |..|+ ...|...+....         ..|+++.|..+|+..++.........+.
T Consensus        90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~  169 (530)
T 2ooe_A           90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR  169 (530)
T ss_dssp             HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred             HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence             34566666655    55555442 44443 334444443322         2567777777777776621111112222


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH------HCC---CCCCH--------H
Q 036661          298 TLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAME------AAG---EVPDL--------V  360 (615)
Q Consensus       298 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~---~~~~~--------~  360 (615)
                      .........|. ..+..++.                 .+.+++..|..+++++.      +..   ++|+.        .
T Consensus       170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~  231 (530)
T 2ooe_A          170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD  231 (530)
T ss_dssp             HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred             HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence            22111100110 01111111                 02334556666555421      111   23431        2


Q ss_pred             HHHHHHHhhcc----cchh----hHHHHHHHHHHhcCCCCchHHHHHHHHHHHh-------cCChH-------HHHHHHh
Q 036661          361 TVLSMISGCGQ----SGAL----ELGKWFDNYACSGGLKDNVMVCNALIDMYSK-------CGSIG-------DARELFY  418 (615)
Q Consensus       361 ~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~  418 (615)
                      .|...+.....    .++.    +.+..++++..... +.+..+|..++..+.+       .|+++       +|..+++
T Consensus       232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~  310 (530)
T 2ooe_A          232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE  310 (530)
T ss_dssp             HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence            33333322111    1222    36677888877754 5667888888888775       68887       8999999


Q ss_pred             cCCC---C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCC
Q 036661          419 ALPE---K-TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN-R-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV  492 (615)
Q Consensus       419 ~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  492 (615)
                      +...   | +...|..++..+.+.|++++|..+|+++.+.  .|+ . ..|..++..+.+.|++++|..+|++..+.   
T Consensus       311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---  385 (530)
T 2ooe_A          311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---  385 (530)
T ss_dssp             HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Confidence            7664   3 5778999999999999999999999999985  554 3 47888888888999999999999999853   


Q ss_pred             CCC-hhHHHHHHHH-HHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC----C
Q 036661          493 NPE-LNHYSCMADL-LGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA----P  564 (615)
Q Consensus       493 ~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~  564 (615)
                      +|. ...+...+.. +...|++++|..+|++.. ..| +...|..++..+.+.|+.++|..+++++++..|.++.    .
T Consensus       386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l  465 (530)
T 2ooe_A          386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI  465 (530)
T ss_dssp             TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred             cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence            343 3334333322 346899999999999886 334 5678899999999999999999999999998887665    7


Q ss_pred             hHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          565 YVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       565 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      |...+......|+.+.+..+.+++.+..+
T Consensus       466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          466 WARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            77888888899999999999999887654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.81  E-value=3.5e-18  Score=172.78  Aligned_cols=369  Identities=9%  Similarity=-0.055  Sum_probs=191.9

Q ss_pred             cchHHHHHHHHHccCCHHHHHHHHHhcccC----------CCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCC------
Q 036661          190 VSVCNTWISAYAKCNDLKMAELVFRGIEEG----------LRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDG------  253 (615)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------  253 (615)
                      ...|+.+...+...|++++|++.|++..+.          .....+|+.+...|...|++++|...+++..+..      
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            446677777777777777777777654321          2234567777778888888888888777765421      


Q ss_pred             CCC-CHHhHHHHHHhc--cCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHH
Q 036661          254 FRP-DVTTVVSLLSSC--VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAM  330 (615)
Q Consensus       254 ~~p-~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l  330 (615)
                      ..+ ...++.....++  ...++++.|...|+...+.. |.++..+..+..++.+                         
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~-------------------------  184 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYR-------------------------  184 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH-------------------------
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-------------------------
Confidence            011 122232222222  12334555555555555443 2222233322222111                         


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHh----hcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 036661          331 ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISG----CGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK  406 (615)
Q Consensus       331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (615)
                         +...++.++|++.+++..+.. +.+...+..+...    ....++.+.|...++...... +.+..++..+...|..
T Consensus       185 ---l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~  259 (472)
T 4g1t_A          185 ---LDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR  259 (472)
T ss_dssp             ---HHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred             ---hcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence               222334444444444444331 1222222222211    122334444444444444433 3334444445555555


Q ss_pred             cCChHHHHHHHhcCCC---CChHHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 036661          407 CGSIGDARELFYALPE---KTVVSWTTMIAGCAL-------------------NGEFVEALDLFHQMMELDLRPNRVTFL  464 (615)
Q Consensus       407 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~~~p~~~~~~  464 (615)
                      .|++++|...+++..+   .+..++..+..+|..                   .+.++.|...+++..+.+ +.+...+.
T Consensus       260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~  338 (472)
T 4g1t_A          260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS  338 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred             cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence            5555555555544332   122333333333221                   234677888888888763 33445778


Q ss_pred             HHHHHhhccCchHHHHHHHHHHHHhhCCCCChh----HHHHHHH-HHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHH
Q 036661          465 AVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN----HYSCMAD-LLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCAC  538 (615)
Q Consensus       465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~  538 (615)
                      .+...+...|++++|...|+++.+.   .|+..    .+..++. .+...|++++|++.+++.. ..|+....       
T Consensus       339 ~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~-------  408 (472)
T 4g1t_A          339 ILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK-------  408 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH-------
T ss_pred             hHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH-------
Confidence            8889999999999999999998843   33322    2333443 3457899999999999876 66654332       


Q ss_pred             HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcccCCceeEE
Q 036661          539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPGQSLV  602 (615)
Q Consensus       539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  602 (615)
                        .+....+.+++++.++.+|+++.+|..+|.+|...|++++|++.|++.++.+.......+|+
T Consensus       409 --~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          409 --EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             --HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             --HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence              22345567788899999999999999999999999999999999999999888776677775

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.80  E-value=2.4e-16  Score=159.72  Aligned_cols=353  Identities=12%  Similarity=0.070  Sum_probs=292.9

Q ss_pred             CCCcchHHHHHHHHhc----CCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccC----chhhhhhhHHHHHHHHhcCCC
Q 036661          220 LRTVVSWNSIIGGCTY----GDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVC----PEALVQGRLVHSHGIHYGFDL  291 (615)
Q Consensus       220 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~  291 (615)
                      ..+...+..+...|..    .+++++|+..|++..+.|   +...+..+...+..    .++.+.|...+....+.|   
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---  109 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---  109 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence            4466677777777777    899999999999998864   45566666666666    889999999999998875   


Q ss_pred             ChhHHHHHHHHHHh----cCCHHHHHHHHhccCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHH
Q 036661          292 DVSVINTLISMYSK----CGDIDSARFLFDGMCDR-TRVSWTAMISGYAQ----KGDLDEALRLFFAMEAAGEVPDLVTV  362 (615)
Q Consensus       292 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  362 (615)
                      ++..+..|...|..    .+++++|...|+..... +...+..+...|..    .+++++|++.|++..+.|   +...+
T Consensus       110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~  186 (490)
T 2xm6_A          110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC  186 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            56677788888988    88999999999987443 56678888888887    789999999999998875   56667


Q ss_pred             HHHHHhhcc----cchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChHHHHHHHH
Q 036661          363 LSMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK----CGSIGDARELFYALPE-KTVVSWTTMIA  433 (615)
Q Consensus       363 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~  433 (615)
                      ..+...+..    .++.++|..+++...+.+   +...+..+...|..    .+++++|.+.|++..+ .+...+..+..
T Consensus       187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  263 (490)
T 2xm6_A          187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY  263 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            777777766    789999999999998865   45667778888876    7899999999998665 56778888888


Q ss_pred             HHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc-----CchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661          434 GCAL----NGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA-----GFLEKGWGYFNLMTKVYQVNPELNHYSCMAD  504 (615)
Q Consensus       434 ~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  504 (615)
                      .|..    .+++++|+..|++..+.|   +...+..+...|...     +++++|...+++..+.    .+...+..+..
T Consensus       264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~  336 (490)
T 2xm6_A          264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA  336 (490)
T ss_dssp             HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence            8888    899999999999998764   455666777777776     8999999999999853    34566778888


Q ss_pred             HHHhcC---ChHHHHHHHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc---
Q 036661          505 LLGRKG---KLKEALDFVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL---  574 (615)
Q Consensus       505 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---  574 (615)
                      +|.+.|   ++++|+++|++.....+...+..+...+..    .+++++|...++++.+..  ++.++..|+.+|..   
T Consensus       337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g  414 (490)
T 2xm6_A          337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG  414 (490)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred             HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence            888867   889999999998744567788889999988    899999999999999864  57899999999998   


Q ss_pred             -cCChHHHHHHHHHHHhcCc
Q 036661          575 -GGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       575 -~g~~~~A~~~~~~~~~~~~  593 (615)
                       .+++++|.+.|++..+.+.
T Consensus       415 ~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          415 VERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHCCC
Confidence             8999999999999998874

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.80  E-value=2e-18  Score=163.80  Aligned_cols=288  Identities=10%  Similarity=0.025  Sum_probs=121.6

Q ss_pred             ccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHH
Q 036661          202 KCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVH  281 (615)
Q Consensus       202 ~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  281 (615)
                      +.|++++|.++++++.  .|  .+|..+..++.+.|++++|++.|.+.      +|..+|..++.++...|++++|..++
T Consensus        15 ~~~~ld~A~~fae~~~--~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl   84 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN--EP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL   84 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC--Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            4566777888877775  33  37778888888888888888887552      56677888888888888888888877


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 036661          282 SHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVT  361 (615)
Q Consensus       282 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  361 (615)
                      ...++.  .+++.+.+.++.+|.+.|+++++.++++.   |+..+|+.+...|...|.+++|...|..+         ..
T Consensus        85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n  150 (449)
T 1b89_A           85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN  150 (449)
T ss_dssp             --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred             HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence            766663  34466777788888888888887777753   56668888888888888888888888765         35


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCCh
Q 036661          362 VLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEF  441 (615)
Q Consensus       362 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~  441 (615)
                      |..+..++.+.|+++.|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus       151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~  223 (449)
T 1b89_A          151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF  223 (449)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence            777888888888888888887776      267778888888888888888877666554 3444444677788888888


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC------ChhHHHHHHHHHHhcCChHHH
Q 036661          442 VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP------ELNHYSCMADLLGRKGKLKEA  515 (615)
Q Consensus       442 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A  515 (615)
                      ++|+.+++...... +-....|.-|.-+|++- ++++..+.++...++.+++|      +...|..++..|..-++++.|
T Consensus       224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A  301 (449)
T 1b89_A          224 EELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA  301 (449)
T ss_dssp             HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence            88888888877653 33345666665555543 23333333333333335544      356788888888888888887


Q ss_pred             HHHHHhC
Q 036661          516 LDFVQSM  522 (615)
Q Consensus       516 ~~~~~~~  522 (615)
                      ....-+-
T Consensus       302 ~~tm~~h  308 (449)
T 1b89_A          302 IITMMNH  308 (449)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhC
Confidence            7766554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.80  E-value=1.4e-18  Score=169.19  Aligned_cols=261  Identities=10%  Similarity=-0.048  Sum_probs=212.6

Q ss_pred             CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 036661          323 TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALID  402 (615)
Q Consensus       323 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  402 (615)
                      +...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            44568888888999999999999999888764 4567788888888899999999999999888765 556788888999


Q ss_pred             HHHhcCChHHHHHHHhcCCCCC-------------hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 036661          403 MYSKCGSIGDARELFYALPEKT-------------VVSWTTMIAGCALNGEFVEALDLFHQMMELDLR-PNRVTFLAVLQ  468 (615)
Q Consensus       403 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~  468 (615)
                      +|...|++++|...++++...+             ...+..+...+...|++++|+..++++.+.... ++..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            9999999999999998876521             123344578889999999999999999997421 15788999999


Q ss_pred             HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhH
Q 036661          469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEI  546 (615)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~  546 (615)
                      .+...|++++|...++++.+.  .+.+..++..++.+|...|++++|.+.++++. ..| +...+..++.++...|++++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999863  24457789999999999999999999999987 344 57788999999999999999


Q ss_pred             HHHHHHHHhccCCC------------CCCChHhHHHHHHccCChHHHHHHHHH
Q 036661          547 GEYVAYRLFELEPH------------SAAPYVEMANIYALGGRWDGVANLRTM  587 (615)
Q Consensus       547 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  587 (615)
                      |...+++++++.|+            +...|..++.++...|+.+.|.++.++
T Consensus       300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999999999887            367899999999999999999988765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.79  E-value=5.3e-17  Score=151.36  Aligned_cols=271  Identities=10%  Similarity=-0.044  Sum_probs=214.6

Q ss_pred             HHHHhcCCHHHHHHHHhccCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhh
Q 036661          301 SMYSKCGDIDSARFLFDGMCDRTR----VSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALE  376 (615)
Q Consensus       301 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  376 (615)
                      .-....|++..|+..++.....++    .....+.++|...|+++.|+..++.    .-+|+..++..+...+...++.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence            345567999999999887654432    2445678899999999999986654    24677788888888999999999


Q ss_pred             HHHHHHHHHHhcCC-CCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 036661          377 LGKWFDNYACSGGL-KDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELD  455 (615)
Q Consensus       377 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  455 (615)
                      .|.+.++.+...+. +.+...+..+..++...|++++|.+.+++  ..+...+..++..+.+.|++++|.+.++++.+. 
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-  159 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-  159 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence            99999999887764 44566777888999999999999999998  567889999999999999999999999999987 


Q ss_pred             CCCCHHHH---HHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhh
Q 036661          456 LRPNRVTF---LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGI  530 (615)
Q Consensus       456 ~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~  530 (615)
                       .|+....   ..++..+...|++++|..+|+++.+.  .+.+...++.++.++.+.|++++|.+.++++.  .+.+..+
T Consensus       160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~  236 (291)
T 3mkr_A          160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET  236 (291)
T ss_dssp             -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence             4554321   22334445668999999999999964  45677889999999999999999999999986  4446678


Q ss_pred             HHHHHHHHHHhCChhH-HHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHH
Q 036661          531 WGTLLCACKIHRNIEI-GEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLR  585 (615)
Q Consensus       531 ~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  585 (615)
                      +..++..+...|+.++ +.++++++++++|+++.+.    +...+.+.+++|..-|
T Consensus       237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence            8889989989998865 6789999999999976543    4455566666665544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=4.4e-18  Score=162.99  Aligned_cols=259  Identities=12%  Similarity=-0.038  Sum_probs=180.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 036661          327 WTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSK  406 (615)
Q Consensus       327 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (615)
                      +..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+...+..
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN  101 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence            3444444445555555555555444432 2233444444444555555555555555544433 3344445555555555


Q ss_pred             cCChHHHHHHHhcCCC---CChHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661          407 CGSIGDARELFYALPE---KTVVSWTTM--------------IA-GCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ  468 (615)
Q Consensus       407 ~g~~~~A~~~~~~~~~---~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  468 (615)
                      .|++++|.+.++++..   .+...+..+              .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~  180 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV  180 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            5555555555554332   111122221              22 3667789999999999999874 446788899999


Q ss_pred             HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhH
Q 036661          469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEI  546 (615)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~  546 (615)
                      .+...|++++|...++++.+.  .+.+...+..++.++...|++++|.+.++++.  .+.+...+..++..+...|++++
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~  258 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL  258 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence            999999999999999999853  23456788899999999999999999999986  44457788899999999999999


Q ss_pred             HHHHHHHHhccCCC------------CCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          547 GEYVAYRLFELEPH------------SAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       547 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      |...++++++..|+            ++..+..++.+|...|++++|.+++++..+
T Consensus       259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  314 (327)
T 3cv0_A          259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE  314 (327)
T ss_dssp             HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred             HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999999999            788999999999999999999999976544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=3.9e-17  Score=154.97  Aligned_cols=285  Identities=13%  Similarity=0.090  Sum_probs=100.9

Q ss_pred             cCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 036661          101 KCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSF  180 (615)
Q Consensus       101 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  180 (615)
                      +.|++++|.+.++++..|  .+|..++.++.+.|++++|++.|.+      .+|..+|..++.++...|++++|...++.
T Consensus        15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            556677777777777554  3777888888888888888877754      25666777777777777778777777776


Q ss_pred             HHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHh
Q 036661          181 GIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTT  260 (615)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  260 (615)
                      .++.  .+++.+.+.++.+|.+.|+++++.++++     .|+..+|+.+...|...|.+++|...|..+         ..
T Consensus        87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n  150 (449)
T 1b89_A           87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN  150 (449)
T ss_dssp             ------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT---------TC
T ss_pred             HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence            6663  3456677778888888888888776664     356667888888888888888888888766         35


Q ss_pred             HHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCCh
Q 036661          261 VVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDL  340 (615)
Q Consensus       261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~  340 (615)
                      |..+..++.+.|+++.|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++
T Consensus       151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~  223 (449)
T 1b89_A          151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF  223 (449)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence            666666666666666666666665      256667777777777777777766655543 2333344566677777777


Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHhhcc--cchhhHHHHHHHHHHhcCCCC------chHHHHHHHHHHHhcCChHH
Q 036661          341 DEALRLFFAMEAAGEVPDLVTVLSMISGCGQ--SGALELGKWFDNYACSGGLKD------NVMVCNALIDMYSKCGSIGD  412 (615)
Q Consensus       341 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~  412 (615)
                      ++|+.+++...... +.....|+-+...+++  .+++.+..+.|..  +.+++|      ...+|..++..|...++++.
T Consensus       224 eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~  300 (449)
T 1b89_A          224 EELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN  300 (449)
T ss_dssp             HHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence            77777777665443 3333444444333332  2333333333221  122222      23455566666666666666


Q ss_pred             HHHHHhc
Q 036661          413 ARELFYA  419 (615)
Q Consensus       413 A~~~~~~  419 (615)
                      |...+-+
T Consensus       301 A~~tm~~  307 (449)
T 1b89_A          301 AIITMMN  307 (449)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6554443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.78  E-value=1.1e-17  Score=155.99  Aligned_cols=248  Identities=8%  Similarity=-0.016  Sum_probs=204.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC
Q 036661          331 ISGYAQKGDLDEALRLFFAMEAAGEVPDL--VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG  408 (615)
Q Consensus       331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  408 (615)
                      ++.....|++..|+..++.....  .|+.  .....+.+++...|+++.|...++.    .-+|+..++..+...+...+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence            45566789999999998876543  3443  3456678899999999999876543    23667788889999999999


Q ss_pred             ChHHHHHHHhcCC----CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHH
Q 036661          409 SIGDARELFYALP----EK-TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYF  483 (615)
Q Consensus       409 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  483 (615)
                      +.++|.+.++++.    .| +...+..+...+...|++++|++.+++      +.+...+..++..+.+.|++++|.+.+
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999753    23 567788888999999999999999987      466788999999999999999999999


Q ss_pred             HHHHHhhCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661          484 NLMTKVYQVNPELNH---YSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELE  558 (615)
Q Consensus       484 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  558 (615)
                      +++.+.   .|+...   ...++..+...|++++|..+|+++.  .+.+...+..++.++.+.|++++|+..++++++.+
T Consensus       154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999854   455321   1223345556699999999999987  55577788999999999999999999999999999


Q ss_pred             CCCCCChHhHHHHHHccCChHH-HHHHHHHHHhcCc
Q 036661          559 PHSAAPYVEMANIYALGGRWDG-VANLRTMMKRNQV  593 (615)
Q Consensus       559 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~  593 (615)
                      |+++.++..++.++...|++++ +.++++++.+..+
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P  266 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR  266 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999986 5789999887664

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.77  E-value=1.5e-15  Score=155.48  Aligned_cols=409  Identities=12%  Similarity=0.043  Sum_probs=283.7

Q ss_pred             CchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHH
Q 036661          119 DVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWIS  198 (615)
Q Consensus       119 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  198 (615)
                      +...|..++. +.+.|++++|..+|+.+.+.. +-+...|...+..+.+.|+++.|..+|+.+++..  |+...|..++.
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~   87 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS   87 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence            6778999998 478999999999999998742 3356678899999999999999999999999864  57677777775


Q ss_pred             HH-HccCCHHHHHH----HHHhcccC----CCCcchHHHHHHHHhc---------CCChhhHHHHHHHHHHCCCCCCH--
Q 036661          199 AY-AKCNDLKMAEL----VFRGIEEG----LRTVVSWNSIIGGCTY---------GDKFDDSLNFYRHMIYDGFRPDV--  258 (615)
Q Consensus       199 ~~-~~~~~~~~A~~----~~~~~~~~----~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~--  258 (615)
                      .. ...|+.+.|.+    +|+.....    .++...|...+.....         .|+++.|..+|++.++.   |..  
T Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~  164 (530)
T 2ooe_A           88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI  164 (530)
T ss_dssp             HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred             HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence            33 34677777665    66655321    3456778887776654         68899999999999873   332  


Q ss_pred             -HhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhc----------c---CCCC-
Q 036661          259 -TTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDG----------M---CDRT-  323 (615)
Q Consensus       259 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------~---~~~~-  323 (615)
                       ..|..........|. ..+.                   .++.  .+.++++.|..++..          .   ..|+ 
T Consensus       165 ~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~  222 (530)
T 2ooe_A          165 EQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN  222 (530)
T ss_dssp             HHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred             HHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence             222222111000000 0000                   0110  012233344333332          1   1111 


Q ss_pred             -------cccHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCCCHHHHHHHHHhhcc-------cchhh-----
Q 036661          324 -------RVSWTAMISGYAQK----GDL----DEALRLFFAMEAAGEVPDLVTVLSMISGCGQ-------SGALE-----  376 (615)
Q Consensus       324 -------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-----  376 (615)
                             ...|...+......    ++.    ..+..+|++.... .+-+...|......+..       .|+++     
T Consensus       223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~  301 (530)
T 2ooe_A          223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF  301 (530)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence                   12344443322221    232    3677888888775 24466677777666654       68876     


Q ss_pred             --HHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Ch-HHHHHHHHHHHhcCChHHHHHHHHH
Q 036661          377 --LGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K-TV-VSWTTMIAGCALNGEFVEALDLFHQ  450 (615)
Q Consensus       377 --~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~  450 (615)
                        .|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++..  | +. ..|..++..+.+.|++++|..+|++
T Consensus       302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  381 (530)
T 2ooe_A          302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  381 (530)
T ss_dssp             HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence              8899999888633356788899999999999999999999998664  3 33 4889999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHH-hhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C---C
Q 036661          451 MMELDLRPNRVTFLAVLQA-CTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-I---K  525 (615)
Q Consensus       451 ~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~  525 (615)
                      ..+.. +.+...+...... +...|+.++|..+|++..+..  +.+...|..++..+.+.|+.++|..+|+++. .   .
T Consensus       382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred             HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence            99862 2233333332222 345899999999999998653  3457889999999999999999999999986 2   2


Q ss_pred             CC--hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          526 SD--AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       526 p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      |+  ...|...+......|+.+.+..+.+++.+..|+
T Consensus       459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence            22  337878888888899999999999999999885

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.76  E-value=8.9e-18  Score=163.82  Aligned_cols=257  Identities=12%  Similarity=0.004  Sum_probs=204.8

Q ss_pred             HHhcCChhHHHH-HHHHHHHCCC-CC--CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 036661          334 YAQKGDLDEALR-LFFAMEAAGE-VP--DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGS  409 (615)
Q Consensus       334 ~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  409 (615)
                      +...|++++|+. .+++...... .|  +...+..+...+...|+++.|...++.+.+.. +.+...+..+..++...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            444578889988 8876554321 11  34557778888999999999999999999876 6678889999999999999


Q ss_pred             hHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHH---------------HHHHh
Q 036661          410 IGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLA---------------VLQAC  470 (615)
Q Consensus       410 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~---------------l~~~~  470 (615)
                      +++|.+.++++..   .+..++..+...+...|++++|...++++.+..  |+. ..+..               .+..+
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            9999999997654   467899999999999999999999999999863  332 22211               23333


Q ss_pred             hccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHH
Q 036661          471 THAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGE  548 (615)
Q Consensus       471 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~  548 (615)
                      ...|++++|..+++++.+.....++..++..++.+|.+.|++++|.+.++++.  .+.+...+..++..+...|++++|+
T Consensus       192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            48899999999999998642222247888999999999999999999999986  4445678999999999999999999


Q ss_pred             HHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          549 YVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ..++++++++|+++.++..++.+|.+.|++++|.+.++++.+..+
T Consensus       272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  316 (368)
T 1fch_A          272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR  316 (368)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999987654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.76  E-value=1.1e-17  Score=162.79  Aligned_cols=233  Identities=11%  Similarity=0.001  Sum_probs=197.3

Q ss_pred             CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHH
Q 036661          358 DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAG  434 (615)
Q Consensus       358 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~  434 (615)
                      +...+..+...+...|+++.|..+++.+.+.. +.+..++..+..+|...|++++|.+.|+++..   .+..+|..+..+
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34457778888999999999999999999876 56788999999999999999999999998765   467899999999


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 036661          435 CALNGEFVEALDLFHQMMELDLRPNRV-----------TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMA  503 (615)
Q Consensus       435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  503 (615)
                      |...|++++|+..++++.+.  .|+..           .+..+...+...|++++|..+++++.+.....++...+..++
T Consensus       143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999985  34422           233457789999999999999999996532222578899999


Q ss_pred             HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHH
Q 036661          504 DLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGV  581 (615)
Q Consensus       504 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  581 (615)
                      .+|.+.|++++|.+.++++.  .+.+..++..++.++...|++++|+..++++++++|+++.++..++.+|...|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999987  4456778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCc
Q 036661          582 ANLRTMMKRNQV  593 (615)
Q Consensus       582 ~~~~~~~~~~~~  593 (615)
                      .+.++++.+...
T Consensus       301 ~~~~~~al~~~~  312 (365)
T 4eqf_A          301 VSNFLTALSLQR  312 (365)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc
Confidence            999999987554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.73  E-value=8.6e-17  Score=143.25  Aligned_cols=195  Identities=13%  Similarity=0.025  Sum_probs=158.6

Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036661          391 KDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVL  467 (615)
Q Consensus       391 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~  467 (615)
                      +++...+..+...+.+.|++++|...|++...   .++..+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            56777888889999999999999999997655   467789999999999999999999999999873 33557888899


Q ss_pred             HHhhcc-----------CchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHH
Q 036661          468 QACTHA-----------GFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGT  533 (615)
Q Consensus       468 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~  533 (615)
                      .++...           |++++|+..+++..+.   .| +...+..++.+|...|++++|+..|+++.  . .+...+..
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~  156 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence            999999           9999999999999853   45 46788889999999999999999999986  5 77788999


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          534 LLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ++.++...|++++|+..++++++++|+++.++..++.++...|++++|++.+++...
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999987643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=3.9e-15  Score=150.37  Aligned_cols=390  Identities=10%  Similarity=-0.041  Sum_probs=225.1

Q ss_pred             chhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC-ccchHHHHHH
Q 036661          120 VASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDA-DVSVCNTWIS  198 (615)
Q Consensus       120 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~  198 (615)
                      ...||.|..++...|++++|++.|++..+.                            ..........| ...+|+.+..
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~----------------------------~~~~~~~~~~~~~~~~~~nla~  102 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEEL----------------------------IQQEHADQAEIRSLVTWGNYAW  102 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHSGGGCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------------------HHhcCccccchHHHHHHHHHHH
Confidence            456777777777778888887777765431                            00000000112 2346777888


Q ss_pred             HHHccCCHHHHHHHHHhcccC--------CC-CcchHHHHHHHHh--cCCChhhHHHHHHHHHHCCCCCCH-HhHHHHHH
Q 036661          199 AYAKCNDLKMAELVFRGIEEG--------LR-TVVSWNSIIGGCT--YGDKFDDSLNFYRHMIYDGFRPDV-TTVVSLLS  266 (615)
Q Consensus       199 ~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~  266 (615)
                      +|...|++++|...++++...        .+ ...++.....++.  ..+++++|++.|++..+..  |+. ..+..+..
T Consensus       103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~  180 (472)
T 4g1t_A          103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAI  180 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence            888888888888887765432        11 2334554444444  4567999999999998854  543 34444443


Q ss_pred             hc---cCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHh----cCCHHHHHHHHhcc---CCCCcccHHHHHHHHHh
Q 036661          267 SC---VCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSK----CGDIDSARFLFDGM---CDRTRVSWTAMISGYAQ  336 (615)
Q Consensus       267 ~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~  336 (615)
                      ++   ...++.+.|...++...+.. +.+..++..+...+..    .++.++|.+.++..   .+.+...+..+...|..
T Consensus       181 ~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~  259 (472)
T 4g1t_A          181 ASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR  259 (472)
T ss_dssp             HHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            33   34456677888888887765 4455556655555544    46678888888776   34456678888899999


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 036661          337 KGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAREL  416 (615)
Q Consensus       337 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  416 (615)
                      .|++++|+..+++..+.. +-+..++..+...+...+.....         .. .      ..........+..+.|...
T Consensus       260 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~---------~~-~------~~~~~~~~~~~~~~~A~~~  322 (472)
T 4g1t_A          260 KDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN---------LR-E------NGMYGKRKLLELIGHAVAH  322 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh---------HH-H------HHHHHHHHHHhhHHHHHHH
Confidence            999999999999888753 33445555554444322111100         00 0      0000111112235667777


Q ss_pred             HhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HhhccCchHHHHHHHHHHHHhh
Q 036661          417 FYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRV--TFLAVLQ-ACTHAGFLEKGWGYFNLMTKVY  490 (615)
Q Consensus       417 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~  490 (615)
                      ++....   .+..++..+...+...|++++|+..|++..+....|...  .+..+.. .....|++++|+..|++..   
T Consensus       323 ~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---  399 (472)
T 4g1t_A          323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---  399 (472)
T ss_dssp             HHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---
T ss_pred             HHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---
Confidence            665543   455678889999999999999999999999874333221  2333332 3457799999999999988   


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661          491 QVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEM  568 (615)
Q Consensus       491 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  568 (615)
                      .+.|+.......         ...+.+++++..  .+.+..++..++..+...|++++|++.|++++++.|.+|.++..+
T Consensus       400 ~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          400 KINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             HSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             hcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence            445664332222         223344444443  344677899999999999999999999999999999998887766


Q ss_pred             H
Q 036661          569 A  569 (615)
Q Consensus       569 ~  569 (615)
                      |
T Consensus       471 G  471 (472)
T 4g1t_A          471 G  471 (472)
T ss_dssp             -
T ss_pred             C
Confidence            5

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.71  E-value=1.6e-16  Score=151.96  Aligned_cols=258  Identities=9%  Similarity=0.017  Sum_probs=137.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccch
Q 036661          298 TLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGA  374 (615)
Q Consensus       298 ~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  374 (615)
                      .+...+...|++++|..+|+++   .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+
T Consensus        26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~  104 (327)
T 3cv0_A           26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN  104 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence            3334444444444444444443   11233344444444444444444444444444432 2233444444444444444


Q ss_pred             hhHHHHHHHHHHhcCCCCchHHHHHH--------------HH-HHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHH
Q 036661          375 LELGKWFDNYACSGGLKDNVMVCNAL--------------ID-MYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCA  436 (615)
Q Consensus       375 ~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~  436 (615)
                      ++.|...++.+.+.. +.+...+..+              .. .+...|++++|.+.++++..   .+...+..+...+.
T Consensus       105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  183 (327)
T 3cv0_A          105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN  183 (327)
T ss_dssp             HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            444444444444322 1111111111              11 24555566666666655433   24556666666667


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036661          437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL  516 (615)
Q Consensus       437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  516 (615)
                      ..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+...+..++.++.+.|++++|.
T Consensus       184 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~  260 (327)
T 3cv0_A          184 LSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAA  260 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHH
Confidence            7777777777777766652 334556666666777777777777777776642  1233556666777777777777777


Q ss_pred             HHHHhCC-CCC-------------ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          517 DFVQSMP-IKS-------------DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       517 ~~~~~~~-~~p-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      +.++++. ..|             +...+..+..++...|++++|...++++++..|+
T Consensus       261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  318 (327)
T 3cv0_A          261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK  318 (327)
T ss_dssp             HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred             HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence            7776654 222             2446666777777777777777777766655443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=8.5e-16  Score=141.39  Aligned_cols=216  Identities=10%  Similarity=-0.001  Sum_probs=157.8

Q ss_pred             HHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC--C----C----hHHHHHHHH
Q 036661          364 SMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE--K----T----VVSWTTMIA  433 (615)
Q Consensus       364 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~l~~  433 (615)
                      .+...+...|+++.|..+++.+.+..  .+...+..+..++...|++++|.+.++++..  |    +    ..+|..+..
T Consensus        10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~   87 (258)
T 3uq3_A           10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN   87 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence            33344444444444444444444433  3444455555555555555555555554433  1    1    467778888


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 036661          434 GCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLK  513 (615)
Q Consensus       434 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  513 (615)
                      .+...|++++|+..++++.+.  .|+.       ..+...|++++|...++++...  .+.+...+..++.++...|+++
T Consensus        88 ~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  156 (258)
T 3uq3_A           88 AYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWP  156 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHH
Confidence            888889999999999888885  4553       3355567888999999888742  2233567778889999999999


Q ss_pred             HHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          514 EALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       514 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      +|.+.++++.  .+.+...+..++.++...|++++|+..++++++.+|+++..|..++.+|...|++++|.+.+++..+.
T Consensus       157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            9999998886  44456788888899999999999999999999999999999999999999999999999999998775


Q ss_pred             C
Q 036661          592 Q  592 (615)
Q Consensus       592 ~  592 (615)
                      .
T Consensus       237 ~  237 (258)
T 3uq3_A          237 D  237 (258)
T ss_dssp             H
T ss_pred             C
Confidence            5

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.5e-15  Score=139.73  Aligned_cols=233  Identities=11%  Similarity=-0.039  Sum_probs=174.1

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCC--CCc----hHHHHH
Q 036661          326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGL--KDN----VMVCNA  399 (615)
Q Consensus       326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~  399 (615)
                      .+..+...+...|++++|+..|++..+..  .+...+..+...+...|+++.|...++.+.+...  .++    ..++..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            35556666666677777777777666655  5566666666667777777777777766655321  111    466777


Q ss_pred             HHHHHHhcCChHHHHHHHhcCCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCch
Q 036661          400 LIDMYSKCGSIGDARELFYALPE--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFL  476 (615)
Q Consensus       400 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~  476 (615)
                      +...+...|++++|.+.++++..  ++       ...+...|++++|...++++...  .|+ ...+..+...+...|++
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  155 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW  155 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence            78888888888888888877654  33       23456678889999999999886  444 45788888899999999


Q ss_pred             HHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHH
Q 036661          477 EKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRL  554 (615)
Q Consensus       477 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~  554 (615)
                      ++|...++++.+.  .+.+...+..++.++.+.|++++|.+.++++.  .+.+...+..++.++...|++++|...++++
T Consensus       156 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          156 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999853  23456788889999999999999999999886  4445678888999999999999999999999


Q ss_pred             hccC------CCCCCChHhHHHH
Q 036661          555 FELE------PHSAAPYVEMANI  571 (615)
Q Consensus       555 ~~~~------p~~~~~~~~l~~~  571 (615)
                      ++++      |++...+..+..+
T Consensus       234 ~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          234 RTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHhChhhcCCCchHHHHHHHHHh
Confidence            9998      7766666655443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.64  E-value=5e-15  Score=137.67  Aligned_cols=241  Identities=10%  Similarity=-0.108  Sum_probs=187.2

Q ss_pred             hcCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHH
Q 036661          336 QKGDLDEALRLFFAMEAAGEV---PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGD  412 (615)
Q Consensus       336 ~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  412 (615)
                      ..|++++|+..++++.+....   .+...+..+...+...|+++.|...++.+.+.. +.+..++..+...|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence            346778888888888775321   234567777778888888888888888887765 5567788888899999999999


Q ss_pred             HHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHh
Q 036661          413 ARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKV  489 (615)
Q Consensus       413 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  489 (615)
                      |.+.++++..   .+...+..+...+...|++++|...++++.+.  .|+.......+..+...|++++|...+++....
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            9999987665   45778999999999999999999999999986  455544444555567779999999999888753


Q ss_pred             hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661          490 YQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA  563 (615)
Q Consensus       490 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  563 (615)
                        .+++... ..++..+...++.++|.+.+++.. ..|.     ...+..++..+...|++++|...++++++.+|++  
T Consensus       174 --~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--  248 (275)
T 1xnf_A          174 --SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--  248 (275)
T ss_dssp             --SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred             --CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence              2334333 347788888899999999999876 3332     4678888999999999999999999999999976  


Q ss_pred             ChHhHHHHHHccCChHHHHHHH
Q 036661          564 PYVEMANIYALGGRWDGVANLR  585 (615)
Q Consensus       564 ~~~~l~~~~~~~g~~~~A~~~~  585 (615)
                       +...+.++...|++++|++.+
T Consensus       249 -~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 -FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             -CHHHHHHHHHHHHHHHC----
T ss_pred             -HHHHHHHHHHHHHHHhhHHHH
Confidence             445577899999999998887

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.64  E-value=9.2e-15  Score=135.66  Aligned_cols=246  Identities=10%  Similarity=-0.036  Sum_probs=125.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcc---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHhhc
Q 036661          296 INTLISMYSKCGDIDSARFLFDGM---CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPD--LVTVLSMISGCG  370 (615)
Q Consensus       296 ~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~  370 (615)
                      +......+...|++++|...|+..   .+.+...+..+...+...|++++|+..+++..+.+..|+  ...+..+...+.
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            344555556666666666666554   222333555566666666666666666666555221111  122444444444


Q ss_pred             ccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661          371 QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQ  450 (615)
Q Consensus       371 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  450 (615)
                      ..|+++.|...++...+.. +.+.                               .+|..+...|...|++++|+..+++
T Consensus        86 ~~~~~~~A~~~~~~a~~~~-~~~~-------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~  133 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRD-TTRL-------------------------------DMYGQIGSYFYNKGNFPLAIQYMEK  133 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCT-------------------------------HHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred             HcccHHHHHHHHHHHHhcC-cccH-------------------------------HHHHHHHHHHHHccCHHHHHHHHHH
Confidence            5555555555555444432 2233                               3444444455555555555555554


Q ss_pred             HHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC----
Q 036661          451 MMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGK---LKEALDFVQSMP----  523 (615)
Q Consensus       451 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----  523 (615)
                      ..+.. +.+...+..+...+...+++++|...++++.+.  .+.+...+..++.++...|+   +++|...++++.    
T Consensus       134 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~  210 (272)
T 3u4t_A          134 QIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA  210 (272)
T ss_dssp             GCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred             HhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence            44431 222333433431222223555555555555432  11123344444555555454   444555444443    


Q ss_pred             CCCC------hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC
Q 036661          524 IKSD------AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG  576 (615)
Q Consensus       524 ~~p~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  576 (615)
                      ..|+      ...+..++..+...|++++|...++++++++|+++.++..+..+....+
T Consensus       211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence            1122      1356667788888999999999999999999998888887777665544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.64  E-value=6.3e-14  Score=139.55  Aligned_cols=376  Identities=11%  Similarity=0.024  Sum_probs=180.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCH---HHHHHHHHhcccCCCCcchHHHHHHHHhcCC-
Q 036661          162 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDL---KMAELVFRGIEEGLRTVVSWNSIIGGCTYGD-  237 (615)
Q Consensus       162 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~-  237 (615)
                      ...+.+.|++++|.++++...+.|   +...+..+...|...|+.   ++|...|++..+.  +...+..+...+...+ 
T Consensus        10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~   84 (452)
T 3e4b_A           10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPG   84 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC--
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCC
Confidence            334445566666666666666554   344455566666666776   7888888877743  5566666666444444 


Q ss_pred             ----ChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhh---hhHHHHHHHHhcCCCChhHHHHHHHHHHhcCC--
Q 036661          238 ----KFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQ---GRLVHSHGIHYGFDLDVSVINTLISMYSKCGD--  308 (615)
Q Consensus       238 ----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  308 (615)
                          ++++|+..|++..+.|...   .+..+...+...+..+.   +...+......|   ++.....+...|...+.  
T Consensus        85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~  158 (452)
T 3e4b_A           85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD  158 (452)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred             CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence                6778888888887765422   34444444444333332   333333333333   23445556666666553  


Q ss_pred             --HHHHHHHHhccCCCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHH
Q 036661          309 --IDSARFLFDGMCDRTRVSWTAMISGYAQKG---DLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDN  383 (615)
Q Consensus       309 --~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  383 (615)
                        .+.+..+++.....++..+..+...|...|   +.++|+..|++..+.| .++...+..+...|....          
T Consensus       159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~----------  227 (452)
T 3e4b_A          159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT----------  227 (452)
T ss_dssp             GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG----------
T ss_pred             cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC----------
Confidence              334444455445555556666666666666   6666666666666655 333333333333332220          


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCH
Q 036661          384 YACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAG-C--ALNGEFVEALDLFHQMMELDLRPNR  460 (615)
Q Consensus       384 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~  460 (615)
                                           ...+++++|.+.|++....++..+..+... +  ...+++++|+..|++..+.|   +.
T Consensus       228 ---------------------~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~  283 (452)
T 3e4b_A          228 ---------------------LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QP  283 (452)
T ss_dssp             ---------------------GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CH
T ss_pred             ---------------------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CH
Confidence                                 000344444444444332233344444444 2  23556666666666666554   34


Q ss_pred             HHHHHHHHHhhccC-----chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhH
Q 036661          461 VTFLAVLQACTHAG-----FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIW  531 (615)
Q Consensus       461 ~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~  531 (615)
                      ..+..|...|. .|     ++++|..+|++..     +-+......|+.+|..    ..++++|..+|++....-+....
T Consensus       284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~  357 (452)
T 3e4b_A          284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSAD  357 (452)
T ss_dssp             HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHH
T ss_pred             HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHH
Confidence            44444554444 33     6666666666544     2334445555555554    23666666666665433334444


Q ss_pred             HHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHH--ccCChHHHHHHHHHHHhc
Q 036661          532 GTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA--LGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       532 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~  591 (615)
                      ..+...|..    ..|.++|...++++.+..+.  .....+..+..  ..++..+|.+..++..+.
T Consensus       358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            455555543    34667777777777665543  23333333332  223455666666655443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.64  E-value=1.8e-16  Score=162.56  Aligned_cols=149  Identities=12%  Similarity=0.092  Sum_probs=122.3

Q ss_pred             hHHHHHHHHHhhcCCChhHHHHhhccCC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHH
Q 036661           89 IFVQTTMVDMYAKCDRLDCAYKLFDKMP-------DRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGL  161 (615)
Q Consensus        89 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  161 (615)
                      ..+||++|++|++.|++++|.++|++|.       .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            3589999999999999999999997753       589999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCh-hHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC---CCCcchHHHHHHHHhcCC
Q 036661          162 TQAAIHAKHL-SLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG---LRTVVSWNSIIGGCTYGD  237 (615)
Q Consensus       162 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~li~~~~~~~  237 (615)
                      |.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++...++...+...   .|...+...|...|.+.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence            9999999985 789999999999999999999999988776654444333333222211   112445555666677655

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.62  E-value=1.8e-14  Score=131.94  Aligned_cols=198  Identities=10%  Similarity=-0.052  Sum_probs=157.0

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036661          394 VMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC  470 (615)
Q Consensus       394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  470 (615)
                      ...+..+...+...|++++|.+.++++..   .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            44566667777777777777777776543   356677888888888888888888888888763 34567788888888


Q ss_pred             hccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHH
Q 036661          471 THAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIG  547 (615)
Q Consensus       471 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A  547 (615)
                      ...|++++|.++++++.+ .+..| +...+..++.++...|++++|.+.++++.  .+.+...+..++..+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            888999999999888875 12344 35667778888888999999999888876  333566788888888899999999


Q ss_pred             HHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          548 EYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       548 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ...++++++..|+++..+..++.+|...|++++|.+.++++.+..+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p  240 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP  240 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence            9999999999998888888999999999999999999998887654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.62  E-value=2e-14  Score=124.43  Aligned_cols=167  Identities=12%  Similarity=0.080  Sum_probs=146.1

Q ss_pred             ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 036661          424 TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMA  503 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  503 (615)
                      +...|..+...|...|++++|++.|++..+.. +-+...+..+..++.+.|++++|...+..+...  .+.+...+..++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence            56788899999999999999999999999873 335578888999999999999999999998853  233456777788


Q ss_pred             HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHH
Q 036661          504 DLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGV  581 (615)
Q Consensus       504 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  581 (615)
                      ..+...++++.|.+.+++..  .+.+...+..++..+...|++++|++.++++++++|+++.+|..+|.+|.+.|++++|
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999876  4445678888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCc
Q 036661          582 ANLRTMMKRNQV  593 (615)
Q Consensus       582 ~~~~~~~~~~~~  593 (615)
                      ++.+++..+..+
T Consensus       161 ~~~~~~al~~~p  172 (184)
T 3vtx_A          161 VKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHTTH
T ss_pred             HHHHHHHHhCCc
Confidence            999999987654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.62  E-value=5.9e-15  Score=134.35  Aligned_cols=197  Identities=13%  Similarity=0.104  Sum_probs=117.6

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036661          394 VMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC  470 (615)
Q Consensus       394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  470 (615)
                      ...+..+...+...|++++|...|+++..   .+...+..+...+...|++++|+..++++.+.. +.+...+..+...+
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~  101 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY  101 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence            33444555555566666666665555433   244566666666667777777777777766652 33455666666677


Q ss_pred             hccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHH
Q 036661          471 THAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGE  548 (615)
Q Consensus       471 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~  548 (615)
                      ...|++++|..+++++.+.  .+.+...+..++.++.+.|++++|.+.++++.  .+.+...+..++..+...|++++|+
T Consensus       102 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence            7777777777777776643  23345566666777777777777777776665  3334556666677777777777777


Q ss_pred             HHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          549 YVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ..++++++..|+++.++..++.+|...|++++|.+.++++.+..+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence            777777777777777777777777777777777777777766543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.62  E-value=1e-13  Score=128.61  Aligned_cols=189  Identities=11%  Similarity=-0.012  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHh----cCChHHHHHHHhcCCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036661          396 VCNALIDMYSK----CGSIGDARELFYALPE-KTVVSWTTMIAGCAL----NGEFVEALDLFHQMMELDLRPNRVTFLAV  466 (615)
Q Consensus       396 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  466 (615)
                      .+..+...|..    .+++++|.+.|++..+ .++..+..+...|..    .+++++|+..+++..+.+   +...+..+
T Consensus        40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  116 (273)
T 1ouv_A           40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASL  116 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHH
Confidence            34444444555    5555555555554433 345556666666666    777777777777777754   55666667


Q ss_pred             HHHhhc----cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHH
Q 036661          467 LQACTH----AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIWGTLLCAC  538 (615)
Q Consensus       467 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~  538 (615)
                      ...|..    .+++++|...|++..+. +   +...+..++.+|..    .+++++|.+.+++.....+...+..+...+
T Consensus       117 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~  192 (273)
T 1ouv_A          117 GGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMY  192 (273)
T ss_dssp             HHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            777776    77778888777777743 2   44556667777776    778888888877765333456667777777


Q ss_pred             HH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc----cCChHHHHHHHHHHHhcCc
Q 036661          539 KI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL----GGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       539 ~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  593 (615)
                      ..    .+++++|...++++++.+|  +..+..++.+|..    .|++++|.+.+++..+.+.
T Consensus       193 ~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          193 HHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             HHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence            77    7888888888888887766  5677888888888    8888888888888877664

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.62  E-value=3e-14  Score=127.86  Aligned_cols=200  Identities=10%  Similarity=-0.026  Sum_probs=160.1

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661          392 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ  468 (615)
Q Consensus       392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  468 (615)
                      .+...+..+...+...|++++|.+.++++..   .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            3455667777778888888888888776544   356678888888888899999999999888863 445678888888


Q ss_pred             Hhhcc-CchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCCh
Q 036661          469 ACTHA-GFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNI  544 (615)
Q Consensus       469 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~  544 (615)
                      .+... |++++|...++++.+ .+..|+ ...+..++.++...|++++|.+.++++.  .+.+...+..++..+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence            88889 999999999998885 223343 5677788888999999999999998876  333466788888888999999


Q ss_pred             hHHHHHHHHHhccCC-CCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          545 EIGEYVAYRLFELEP-HSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       545 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ++|...++++++..| +++..+..++.++...|++++|..+++.+.+..+
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p  213 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP  213 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence            999999999999999 8888888888888999999999999988876543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.61  E-value=8.8e-15  Score=133.20  Aligned_cols=213  Identities=12%  Similarity=0.060  Sum_probs=152.5

Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHH
Q 036661          360 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCA  436 (615)
Q Consensus       360 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~  436 (615)
                      ..+..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|.+.++++..   .+...+..+...+.
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            344444555555666666666666655533 34556666677777777777777777776543   35677888888899


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 036661          437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEAL  516 (615)
Q Consensus       437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  516 (615)
                      ..|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.  .+.+...+..++.++.+.|++++|.
T Consensus       103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999998864 456678888889999999999999999998853  2345678888999999999999999


Q ss_pred             HHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC
Q 036661          517 DFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG  576 (615)
Q Consensus       517 ~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  576 (615)
                      +.++++.  .+.+...+..++.++...|++++|...++++++.+|+++..+..++.+....|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence            9999886  44456788889999999999999999999999999999888887766654443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.61  E-value=2.8e-14  Score=142.05  Aligned_cols=345  Identities=11%  Similarity=-0.005  Sum_probs=229.4

Q ss_pred             HHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhh---hhhhHHHHHHHHhcCCCChhHHHHHHHHHH
Q 036661          228 SIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEAL---VQGRLVHSHGIHYGFDLDVSVINTLISMYS  304 (615)
Q Consensus       228 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  304 (615)
                      .+...+.+.|++++|+++|++..+.|.   ...+..+...+...|+.   ++|...++...+.    ++..+..+...+.
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence            356677888999999999999988763   23334444455567777   8999999888855    4445666666555


Q ss_pred             hcC-----CHHHHHHHHhccCCC-CcccHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchh
Q 036661          305 KCG-----DIDSARFLFDGMCDR-TRVSWTAMISGYAQKGDLD---EALRLFFAMEAAGEVPDLVTVLSMISGCGQSGAL  375 (615)
Q Consensus       305 ~~~-----~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  375 (615)
                      ..+     +.++|...|++...+ +...+..+...|...+..+   ++.+.+......|.   ......+...+...+.+
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~  157 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY  157 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence            554     788999999887443 5557888888888766544   45555555555553   23444555566666655


Q ss_pred             hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC---ChHHHHHHHhcCCC---CChHHHHHHHHHHHhc----CChHHHH
Q 036661          376 ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG---SIGDARELFYALPE---KTVVSWTTMIAGCALN----GEFVEAL  445 (615)
Q Consensus       376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~  445 (615)
                      +.+......+.+.-...++..+..|...|...|   +.++|.+.|++..+   ++...+..+...|...    +++++|+
T Consensus       158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~  237 (452)
T 3e4b_A          158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ  237 (452)
T ss_dssp             GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence            544444333333222333447788888899999   89999999987654   3444446777777654    7999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHH-h--hccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC-----ChHHHHH
Q 036661          446 DLFHQMMELDLRPNRVTFLAVLQA-C--THAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG-----KLKEALD  517 (615)
Q Consensus       446 ~~~~~~~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~  517 (615)
                      ..|++.. .|   +...+..+... +  ...+++++|..+|++..+. +   +...+..|+.+|. .|     ++++|++
T Consensus       238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~  308 (452)
T 3e4b_A          238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA  308 (452)
T ss_dssp             HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred             HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence            9999987 43   34455555555 3  5688999999999998853 3   5667777888887 55     9999999


Q ss_pred             HHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc----cCChHHHHHHHHHHH
Q 036661          518 FVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL----GGRWDGVANLRTMMK  589 (615)
Q Consensus       518 ~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~  589 (615)
                      +|++.. +-+......+...|..    ..++++|...++++.+  +.++..+..|+.+|..    ..++++|...+++..
T Consensus       309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~  385 (452)
T 3e4b_A          309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK  385 (452)
T ss_dssp             HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            999999 6667778888877765    3499999999999987  4568899999999985    458999999999999


Q ss_pred             hcCcc
Q 036661          590 RNQVK  594 (615)
Q Consensus       590 ~~~~~  594 (615)
                      +.|..
T Consensus       386 ~~g~~  390 (452)
T 3e4b_A          386 AQDTP  390 (452)
T ss_dssp             TTCCH
T ss_pred             HCCCH
Confidence            88753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.59  E-value=6.6e-14  Score=134.82  Aligned_cols=244  Identities=10%  Similarity=0.021  Sum_probs=185.9

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccch-hhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 036661          326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGA-LELGKWFDNYACSGGLKDNVMVCNALIDMY  404 (615)
Q Consensus       326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (615)
                      .|..+...+.+.|++++|+..+++.+... +-+...|..+...+...|+ ++.|...++.+.+.. +.+...|..+..++
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            56667777777888888888888877653 3455666677777777775 888888888777765 55677788888888


Q ss_pred             HhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCchHHH-
Q 036661          405 SKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH-AGFLEKG-  479 (615)
Q Consensus       405 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a-  479 (615)
                      ...|++++|+..|+++..   .+...|..+..++...|++++|+..++++++.+ +-+...|+.+..++.. .|..++| 
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~  255 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV  255 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence            888888888888887665   466788888889999999999999999999873 3356788888888888 5665777 


Q ss_pred             ----HHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-ChhhHHHHHHHHHHhC--------C
Q 036661          480 ----WGYFNLMTKVYQVNPE-LNHYSCMADLLGRKG--KLKEALDFVQSMPIKS-DAGIWGTLLCACKIHR--------N  543 (615)
Q Consensus       480 ----~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~--------~  543 (615)
                          +..++++...   .|+ ...|..+..++...|  ++++|++.++++...| +...+..++..+.+.|        +
T Consensus       256 ~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~  332 (382)
T 2h6f_A          256 LEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED  332 (382)
T ss_dssp             HHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence                4778877742   444 567888888888888  6889988888775334 4557777888887764        2


Q ss_pred             -hhHHHHHHHHH-hccCCCCCCChHhHHHHHHcc
Q 036661          544 -IEIGEYVAYRL-FELEPHSAAPYVEMANIYALG  575 (615)
Q Consensus       544 -~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~  575 (615)
                       .++|+++++++ .+++|.....|..++..+...
T Consensus       333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence             58899999999 899999888888888776543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.59  E-value=3.4e-14  Score=136.79  Aligned_cols=229  Identities=10%  Similarity=0.025  Sum_probs=194.5

Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC-hHHHHHHHhcCCC---CChHHHHHHHHHH
Q 036661          360 VTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGS-IGDARELFYALPE---KTVVSWTTMIAGC  435 (615)
Q Consensus       360 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~  435 (615)
                      ..+..+...+...|+++.|...++.+++.. +.+...|+.+..++...|+ +++|+..|+++..   .+...|..+..++
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            456666777888899999999999999876 6678889999999999997 9999999998775   4678999999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh-cCChHH
Q 036661          436 ALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR-KGKLKE  514 (615)
Q Consensus       436 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~  514 (615)
                      ...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.+.  -+-+...|..++.++.+ .|..++
T Consensus       177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence            99999999999999999973 445679999999999999999999999999953  23346789999999999 666588


Q ss_pred             H-----HHHHHhCC-CCC-ChhhHHHHHHHHHHhC--ChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC--------C
Q 036661          515 A-----LDFVQSMP-IKS-DAGIWGTLLCACKIHR--NIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG--------R  577 (615)
Q Consensus       515 A-----~~~~~~~~-~~p-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~  577 (615)
                      |     ++.++++. ..| +...|..+...+...|  ++++|++.++++ +.+|+++.++..++++|.+.|        +
T Consensus       254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~  332 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED  332 (382)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence            8     47888876 444 5668888888888877  689999999998 999999999999999999975        3


Q ss_pred             -hHHHHHHHHHH-HhcCc
Q 036661          578 -WDGVANLRTMM-KRNQV  593 (615)
Q Consensus       578 -~~~A~~~~~~~-~~~~~  593 (615)
                       +++|+++++++ .+..+
T Consensus       333 ~~~~A~~~~~~l~~~~DP  350 (382)
T 2h6f_A          333 ILNKALELCEILAKEKDT  350 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHhCc
Confidence             59999999998 55543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.58  E-value=1.8e-15  Score=155.19  Aligned_cols=129  Identities=15%  Similarity=0.172  Sum_probs=110.0

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhcc-------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 036661          292 DVSVINTLISMYSKCGDIDSARFLFDGM-------CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLS  364 (615)
Q Consensus       292 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  364 (615)
                      -..+|++||++|++.|++++|.++|+.|       ..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            3457999999999999999999999665       468999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccchh-hHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcC
Q 036661          365 MISGCGQSGAL-ELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL  420 (615)
Q Consensus       365 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  420 (615)
                      +|.++++.|+. +.|.+++++|.+.|+.||..+|++++....+.+-++.+.++...+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f  262 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF  262 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence            99999999874 788999999999999999999999887777665555554444333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.57  E-value=1.9e-13  Score=125.11  Aligned_cols=197  Identities=15%  Similarity=0.008  Sum_probs=136.1

Q ss_pred             HhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHH
Q 036661          367 SGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVE  443 (615)
Q Consensus       367 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~  443 (615)
                      ..+...|+++.|...++.+.+.. +.+...+..+...|...|++++|.+.++++..   .+...+..+...+...|++++
T Consensus        45 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  123 (252)
T 2ho1_A           45 LGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE  123 (252)
T ss_dssp             HHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence            33333444444444444443332 23344555555566666666666666655433   345667777778888888888


Q ss_pred             HHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 036661          444 ALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSM  522 (615)
Q Consensus       444 a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  522 (615)
                      |.++++++.+.+..|+ ...+..+...+...|++++|...++++.+.  .+.+...+..++.++...|++++|...++++
T Consensus       124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  201 (252)
T 2ho1_A          124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLF  201 (252)
T ss_dssp             HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8888888877333554 357777788888888899998888888753  2334667788888899999999999998887


Q ss_pred             C--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH
Q 036661          523 P--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV  566 (615)
Q Consensus       523 ~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  566 (615)
                      .  .+.+...+..+...+...|++++|.+.++++++..|+++....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  247 (252)
T 2ho1_A          202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE  247 (252)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred             HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            5  3345567777888888999999999999999999998765443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.57  E-value=9e-13  Score=122.12  Aligned_cols=240  Identities=11%  Similarity=-0.009  Sum_probs=169.0

Q ss_pred             HHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCcc----cHHHHH
Q 036661          258 VTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCD--RTRV----SWTAMI  331 (615)
Q Consensus       258 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~ll  331 (615)
                      ...+......+...|+++.|...++.+.+.. +.+...+..+...|...|++++|...++....  ++..    .|..+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            3445566777889999999999999998875 34566788899999999999999999998743  3333    388899


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 036661          332 SGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIG  411 (615)
Q Consensus       332 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  411 (615)
                      ..+...|++++|+..|++..+.. +.+...+..+..                                   .|...|+++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~-----------------------------------~~~~~~~~~  125 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGS-----------------------------------YFYNKGNFP  125 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH-----------------------------------HHHHTTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHH-----------------------------------HHHHccCHH
Confidence            99999999999999999998853 223344444443                                   445556666


Q ss_pred             HHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc---hHHHHHHHHH
Q 036661          412 DARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGF---LEKGWGYFNL  485 (615)
Q Consensus       412 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~  485 (615)
                      +|.+.+++...   .+...|..+...+...+++++|...++++.+.. +.+...+..+..++...|+   +++|...+++
T Consensus       126 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  204 (272)
T 3u4t_A          126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK  204 (272)
T ss_dssp             HHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred             HHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence            66666665544   244556666633334458888888888888763 3335667777777777777   7778888888


Q ss_pred             HHHhhCCCCCh------hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-hhhHHHHH
Q 036661          486 MTKVYQVNPEL------NHYSCMADLLGRKGKLKEALDFVQSMP-IKSD-AGIWGTLL  535 (615)
Q Consensus       486 ~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~  535 (615)
                      +.+...-.|+.      ..+..++..|...|++++|.+.++++. ..|+ ...+..+.
T Consensus       205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~  262 (272)
T 3u4t_A          205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK  262 (272)
T ss_dssp             HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence            77554333442      467778888888888999888888876 4443 33444333

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.57  E-value=4.3e-14  Score=131.30  Aligned_cols=222  Identities=13%  Similarity=-0.045  Sum_probs=183.6

Q ss_pred             hhcccchhhHHHHHHHHHHhcCC---CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCCh
Q 036661          368 GCGQSGALELGKWFDNYACSGGL---KDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEF  441 (615)
Q Consensus       368 ~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~  441 (615)
                      .....|+++.|...++.+.+...   +.+..++..+...+...|++++|...|+++..   .+..+|..+...+...|++
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence            34566899999999999988632   22467888899999999999999999998764   4678999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036661          442 VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQS  521 (615)
Q Consensus       442 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  521 (615)
                      ++|+..++++.+.. +.+...+..+..++...|++++|...++++.+.   .|+..........+...|++++|...+++
T Consensus        94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A           94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999999999973 345678999999999999999999999999853   45555445555566778999999999977


Q ss_pred             CC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC----CCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          522 MP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH----SAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       522 ~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      .. ..|+......++..+...++.++|...++++++..|.    ++..+..++.+|...|++++|.+.++++.+..+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  246 (275)
T 1xnf_A          170 HFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  246 (275)
T ss_dssp             HHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence            65 3333333344777778888999999999999988774    368899999999999999999999999988764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.57  E-value=2.6e-14  Score=141.50  Aligned_cols=260  Identities=10%  Similarity=0.018  Sum_probs=165.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHhhcccchhhHHHHHHHHHHhc----C-CCCchHHHHHH
Q 036661          330 MISGYAQKGDLDEALRLFFAMEAAGEVPDL----VTVLSMISGCGQSGALELGKWFDNYACSG----G-LKDNVMVCNAL  400 (615)
Q Consensus       330 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l  400 (615)
                      +...+...|++++|+..|++..+.+ +.+.    ..+..+...+...|+++.|...++...+.    + .+.....+..+
T Consensus        54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  132 (411)
T 4a1s_A           54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL  132 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence            3344444555555555555544432 1111    23444444455555555555555544331    1 11223455556


Q ss_pred             HHHHHhcCChHHHHHHHhcCCC---------CChHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHc
Q 036661          401 IDMYSKCGSIGDARELFYALPE---------KTVVSWTTMIAGCALNGE-----------------FVEALDLFHQMMEL  454 (615)
Q Consensus       401 ~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~  454 (615)
                      ...|...|++++|...+++...         ....++..+...|...|+                 +++|+..+++..+.
T Consensus       133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  212 (411)
T 4a1s_A          133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL  212 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            6666666676666666665433         122466677777777777                 77887777776542


Q ss_pred             ----CCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 036661          455 ----DLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP-I  524 (615)
Q Consensus       455 ----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~  524 (615)
                          +-.|. ..++..+...+...|++++|..++++..+...-.++    ...+..++.+|...|++++|.+.+++.. .
T Consensus       213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence                11122 236777778888888999998888887653221122    2367778888889999999988888765 1


Q ss_pred             ---CC----ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC------CCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          525 ---KS----DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS------AAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       525 ---~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                         ..    ...++..++..+...|++++|...+++++++.+..      ..++..++.+|...|++++|.+++++..+
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence               11    13466777888888999999999999998876543      34788899999999999999999988865

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.56  E-value=2e-14  Score=144.02  Aligned_cols=209  Identities=9%  Similarity=-0.004  Sum_probs=175.2

Q ss_pred             hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh-HHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661          375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSI-GDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQ  450 (615)
Q Consensus       375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~  450 (615)
                      ++.+...++...... +.+...+..+...+...|++ ++|.+.|++..+   .+...|..+..+|...|++++|+..|++
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            444455555444332 45667777888888888888 888888887654   3567899999999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHhhcc---------CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc--------CChH
Q 036661          451 MMELDLRPNRVTFLAVLQACTHA---------GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK--------GKLK  513 (615)
Q Consensus       451 ~~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~  513 (615)
                      ..+.  .|+...+..+..++...         |++++|+..++++.+.  .+.+...|..++.+|...        |+++
T Consensus       163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            9986  67778888999999999         9999999999999853  233467888999999998        9999


Q ss_pred             HHHHHHHhCC-CCC----ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661          514 EALDFVQSMP-IKS----DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       514 ~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                      +|++.|+++. ..|    +...+..++.++...|++++|++.++++++++|+++.++..++.++...|++++|++.+.++
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999987 445    67789999999999999999999999999999999999999999999999999999866544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.56  E-value=1.7e-13  Score=121.90  Aligned_cols=190  Identities=16%  Similarity=0.031  Sum_probs=73.7

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 036661          326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS  405 (615)
Q Consensus       326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (615)
                      .+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+..++.
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~   84 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV   84 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            33334444444444444444444444321 2233333333333444444444444444433332 223333334444443


Q ss_pred             hc-----------CChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 036661          406 KC-----------GSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACT  471 (615)
Q Consensus       406 ~~-----------g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  471 (615)
                      ..           |++++|...+++..+   .+...|..+..++...|++++|+..|++..+..  .+...+..+..++.
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~  162 (217)
T 2pl2_A           85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL  162 (217)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred             HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence            33           444444444443322   123344444444444445555555555444443  33444444444444


Q ss_pred             ccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 036661          472 HAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQS  521 (615)
Q Consensus       472 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  521 (615)
                      ..|++++|+..|+++.+.  .+.+...+..++.++.+.|++++|.+.+++
T Consensus       163 ~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          163 SMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred             HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            455555555555444421  112233344444444444444444444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.56  E-value=5.7e-14  Score=138.70  Aligned_cols=295  Identities=12%  Similarity=0.049  Sum_probs=182.7

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhccC--CC-C----cccHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-C
Q 036661          291 LDVSVINTLISMYSKCGDIDSARFLFDGMC--DR-T----RVSWTAMISGYAQKGDLDEALRLFFAMEAA----GEVP-D  358 (615)
Q Consensus       291 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~  358 (615)
                      .....+......+...|++++|...|++..  .| +    ...+..+...+...|++++|...+++....    +..| .
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            344556667778888888888888887762  22 2    235677777888888888888888876442    2122 2


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHHHhc----CC-CCchHHHHHHHHHHHhcCC--------------------hHHH
Q 036661          359 LVTVLSMISGCGQSGALELGKWFDNYACSG----GL-KDNVMVCNALIDMYSKCGS--------------------IGDA  413 (615)
Q Consensus       359 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~--------------------~~~A  413 (615)
                      ...+..+...+...|+++.|...++...+.    +. .....++..+...|...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            345566667777778888888777776542    10 1113466667777777777                    7777


Q ss_pred             HHHHhcCCC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCchHHH
Q 036661          414 RELFYALPE-----K----TVVSWTTMIAGCALNGEFVEALDLFHQMMELDL-RPN----RVTFLAVLQACTHAGFLEKG  479 (615)
Q Consensus       414 ~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a  479 (615)
                      .+.+++...     .    ...++..+...+...|++++|...+++..+... .++    ..++..+...+...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            666655432     1    123566677777777777777777777665210 111    12566666677777777777


Q ss_pred             HHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHHhCChhHH
Q 036661          480 WGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHRNIEIG  547 (615)
Q Consensus       480 ~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A  547 (615)
                      ...+++......-.++    ..++..++.+|...|++++|.+.+++..    ..++    ..++..++..+...|++++|
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            7777776543211111    3456667777777777777777776654    1111    33556666777777777777


Q ss_pred             HHHHHHHhccCCCCC------CChHhHHHHHHccCChHHHHHHH
Q 036661          548 EYVAYRLFELEPHSA------APYVEMANIYALGGRWDGVANLR  585 (615)
Q Consensus       548 ~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~  585 (615)
                      ...+++++++.+...      .++..++.+|...|+...+...+
T Consensus       327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~  370 (406)
T 3sf4_A          327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI  370 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence            777777777777652      24555666666666666544444

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.55  E-value=1.2e-12  Score=121.25  Aligned_cols=225  Identities=12%  Similarity=0.041  Sum_probs=170.1

Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcc----cchhhHHHHHHHHHHhcCCCCchHHHHH
Q 036661          324 RVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQ----SGALELGKWFDNYACSGGLKDNVMVCNA  399 (615)
Q Consensus       324 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  399 (615)
                      ..++..+...+...|++++|+..|++..+.   -+...+..+...+..    .+++++|...++...+.+   +...+..
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~   79 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   79 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            345555666666667777777777766662   234455555566666    677777777777776654   5566667


Q ss_pred             HHHHHHh----cCChHHHHHHHhcCCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036661          400 LIDMYSK----CGSIGDARELFYALPE-KTVVSWTTMIAGCAL----NGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC  470 (615)
Q Consensus       400 l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  470 (615)
                      +...|..    .+++++|.+.|++..+ .+...+..+...|..    .+++++|+..+++..+.+   +...+..+...|
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~  156 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY  156 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence            7777777    7888888888876554 466778888888888    899999999999999865   556677777777


Q ss_pred             hc----cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHH--
Q 036661          471 TH----AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGKLKEALDFVQSMPIKSDAGIWGTLLCACKI--  540 (615)
Q Consensus       471 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~--  540 (615)
                      ..    .+++++|...|++..+.    .+...+..++.+|..    .+++++|++.+++.....+...+..+...+..  
T Consensus       157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~  232 (273)
T 1ouv_A          157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE  232 (273)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence            77    89999999999998853    345677788899999    99999999999987622336677888888888  


Q ss_pred             --hCChhHHHHHHHHHhccCCCC
Q 036661          541 --HRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       541 --~~~~~~A~~~~~~~~~~~p~~  561 (615)
                        .+++++|...++++++.+|++
T Consensus       233 ~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          233 GVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             SSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             CcccCHHHHHHHHHHHHHcCCHH
Confidence              899999999999999998863

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.55  E-value=7.2e-14  Score=133.99  Aligned_cols=261  Identities=11%  Similarity=0.044  Sum_probs=171.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHhhcccchhhHHHHHHHHHHhc----CC-CCchHHHHHHH
Q 036661          331 ISGYAQKGDLDEALRLFFAMEAAGEVPD----LVTVLSMISGCGQSGALELGKWFDNYACSG----GL-KDNVMVCNALI  401 (615)
Q Consensus       331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~  401 (615)
                      ...+...|++++|...|+++.+.. +.+    ...+..+...+...|+++.|...++...+.    +. +....++..+.
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~   90 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   90 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            334445555555555555554432 111    133444444555555555555555544321    11 11234556666


Q ss_pred             HHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 036661          402 DMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGCALNGE--------------------FVEALDLFHQMM  452 (615)
Q Consensus       402 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~  452 (615)
                      ..+...|++++|...+++...     ++    ..++..+...+...|+                    +++|...+++..
T Consensus        91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~  170 (338)
T 3ro2_A           91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL  170 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            667777777777776665433     11    2366777777777787                    888888877765


Q ss_pred             Hc----CCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661          453 EL----DLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       453 ~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      ..    +-.|. ...+..+...+...|++++|...+++..+...-.++    ...+..++.++...|++++|.+.+++..
T Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  250 (338)
T 3ro2_A          171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  250 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            42    11122 246777788888999999999999888743221122    2367788899999999999999998875


Q ss_pred             ----CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC------CCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661          524 ----IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS------AAPYVEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       524 ----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                          ..++    ..++..++..+...|++++|...+++++++.|..      ..++..++.+|...|++++|.+.+++..
T Consensus       251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  330 (338)
T 3ro2_A          251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  330 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                1111    3466778888999999999999999998876653      3378889999999999999999999987


Q ss_pred             hcC
Q 036661          590 RNQ  592 (615)
Q Consensus       590 ~~~  592 (615)
                      +..
T Consensus       331 ~~~  333 (338)
T 3ro2_A          331 EIS  333 (338)
T ss_dssp             HC-
T ss_pred             HHH
Confidence            654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.55  E-value=3.5e-13  Score=120.80  Aligned_cols=205  Identities=11%  Similarity=-0.043  Sum_probs=145.3

Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHh
Q 036661          361 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCAL  437 (615)
Q Consensus       361 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~  437 (615)
                      .+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.++++..   .+..++..+...+..
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~   88 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            33444444444455555555555444433 33344556666666666666666666665443   355677778888888


Q ss_pred             c-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 036661          438 N-GEFVEALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEA  515 (615)
Q Consensus       438 ~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  515 (615)
                      . |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.  .+.+...+..++.++.+.|++++|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence            8 889999999888887333454 457788888889999999999999988853  233467788888999999999999


Q ss_pred             HHHHHhCC--CC-CChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661          516 LDFVQSMP--IK-SDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEM  568 (615)
Q Consensus       516 ~~~~~~~~--~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  568 (615)
                      .+.++++.  .+ .+...+..+...+...|+.+.|..+++.+.+.+|+++.....+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            99998876  33 4556677777777889999999999999999999877655443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.52  E-value=5.1e-14  Score=139.09  Aligned_cols=289  Identities=13%  Similarity=0.010  Sum_probs=196.7

Q ss_pred             CCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhccCC-----C----
Q 036661          256 PDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLD----VSVINTLISMYSKCGDIDSARFLFDGMCD-----R----  322 (615)
Q Consensus       256 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----  322 (615)
                      +....+......+...|+++.|...++.+.+.+ +.+    ..++..+...+...|++++|...+++...     .    
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            444556666677788888888888888888774 223    24677788888888888888888876511     1    


Q ss_pred             CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHhhcccch--------------------hhH
Q 036661          323 TRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE-VPD----LVTVLSMISGCGQSGA--------------------LEL  377 (615)
Q Consensus       323 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~--------------------~~~  377 (615)
                      ...++..+...+...|++++|...+++..+... .++    ..++..+...+...|+                    ++.
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            233677777888888888888888887765310 011    3366677777888888                    888


Q ss_pred             HHHHHHHHHhc----CC-CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHHHhcCChHH
Q 036661          378 GKWFDNYACSG----GL-KDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGCALNGEFVE  443 (615)
Q Consensus       378 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~  443 (615)
                      |...+....+.    +. +....++..+...|...|++++|...+++...     ++    ..++..+...+...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            88888776542    11 11234677778888888888888888877654     12    2367778888888889999


Q ss_pred             HHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHH
Q 036661          444 ALDLFHQMMELDL-RPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKE  514 (615)
Q Consensus       444 a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~  514 (615)
                      |...+++..+... .++    ..++..+...+...|++++|...+++..+...-.++    ..++..++.+|...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            8888888775310 111    346777788888888899998888887653222222    4467778888888889888


Q ss_pred             HHHHHHhCC-----C--CC-ChhhHHHHHHHHHHhCChh
Q 036661          515 ALDFVQSMP-----I--KS-DAGIWGTLLCACKIHRNIE  545 (615)
Q Consensus       515 A~~~~~~~~-----~--~p-~~~~~~~l~~~~~~~~~~~  545 (615)
                      |.+.+++..     .  .+ ...++..+...+...|+..
T Consensus       326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            888888764     1  11 1224444555555555544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.51  E-value=2.6e-10  Score=117.30  Aligned_cols=216  Identities=9%  Similarity=0.003  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHH-HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcC
Q 036661          342 EALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGK-WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL  420 (615)
Q Consensus       342 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  420 (615)
                      .+..+|++.... .+-+...|...+.-+...|+.+.|. .+++...... +.+...+..++....+.|++++|.++|+.+
T Consensus       327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            355667777665 3456667777777777778888886 8998887643 566777777888888899999999998876


Q ss_pred             CC-------------C------------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhcc-
Q 036661          421 PE-------------K------------TVVSWTTMIAGCALNGEFVEALDLFHQMMEL-DLRPNRVTFLAVLQACTHA-  473 (615)
Q Consensus       421 ~~-------------~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~-  473 (615)
                      ..             |            ...+|...+....+.|+.+.|..+|.+.++. + .+....|...+..-.+. 
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence            53             2            1236777788778888999999999999875 2 22233443333322333 


Q ss_pred             CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----ChhhHHHHHHHHHHhCChhHHH
Q 036661          474 GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS----DAGIWGTLLCACKIHRNIEIGE  548 (615)
Q Consensus       474 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~A~  548 (615)
                      ++.+.|..+|+...+.+  +.+...+...++.....|+.+.|..+|++.. ..|    ....|...+..-...|+.+.+.
T Consensus       484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~  561 (679)
T 4e6h_A          484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR  561 (679)
T ss_dssp             SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred             CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            45899999999998753  3455567788888888999999999999877 333    2346777777778889999999


Q ss_pred             HHHHHHhccCCCCC
Q 036661          549 YVAYRLFELEPHSA  562 (615)
Q Consensus       549 ~~~~~~~~~~p~~~  562 (615)
                      .+.+++.+..|+++
T Consensus       562 ~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          562 TLEKRFFEKFPEVN  575 (679)
T ss_dssp             HHHHHHHHHSTTCC
T ss_pred             HHHHHHHHhCCCCc
Confidence            99999999999864

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.50  E-value=5.8e-13  Score=115.19  Aligned_cols=168  Identities=10%  Similarity=0.014  Sum_probs=143.8

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036661          392 DNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ  468 (615)
Q Consensus       392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  468 (615)
                      .+..+|..+...|.+.|++++|.+.|++..+   .++.+|..+..+|...|++++|+..++...... +.+...+..+..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            3567788899999999999999999988765   467789999999999999999999999998873 445567778888


Q ss_pred             HhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhH
Q 036661          469 ACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEI  546 (615)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~  546 (615)
                      .+...++++.+...+.+..+.  .+.+...+..++.+|.+.|++++|++.|++..  .+.+..++..++.++.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            899999999999999998853  23456788889999999999999999999987  44466789999999999999999


Q ss_pred             HHHHHHHHhccCCCCC
Q 036661          547 GEYVAYRLFELEPHSA  562 (615)
Q Consensus       547 A~~~~~~~~~~~p~~~  562 (615)
                      |+..++++++++|+++
T Consensus       160 A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          160 AVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHhCCccCH
Confidence            9999999999999753

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.48  E-value=6e-13  Score=138.52  Aligned_cols=163  Identities=17%  Similarity=0.195  Sum_probs=145.3

Q ss_pred             ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHH
Q 036661          424 TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSC  501 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~  501 (615)
                      +..+|+.|...|.+.|++++|++.|++.++.  .|+ ...+..+..+|.+.|++++|+..|+++.+.   .|+ ...|..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n   82 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN   82 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence            3467888999999999999999999999986  554 578999999999999999999999999853   454 678899


Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChH
Q 036661          502 MADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWD  579 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  579 (615)
                      ++.+|.+.|++++|++.|+++. ..| +...+..++.++...|++++|++.++++++++|+++.++..++.+|...|+|+
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            9999999999999999999987 444 56789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc
Q 036661          580 GVANLRTMMKRN  591 (615)
Q Consensus       580 ~A~~~~~~~~~~  591 (615)
                      +|.+.++++.+.
T Consensus       163 ~A~~~~~kal~l  174 (723)
T 4gyw_A          163 DYDERMKKLVSI  174 (723)
T ss_dssp             THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988763

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.47  E-value=8.4e-13  Score=114.23  Aligned_cols=164  Identities=12%  Similarity=0.030  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 036661          428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLG  507 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  507 (615)
                      +..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.  .+.+...+..++..+.
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence            4444445555555555555555554431 223445555555555666666666666665532  1223445555666666


Q ss_pred             hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHH
Q 036661          508 RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLR  585 (615)
Q Consensus       508 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  585 (615)
                      ..|++++|.+.++++.  .+.+...+..++..+...|++++|...++++++..|+++.++..++.+|...|++++|.+.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            6666666666666654  33345566777777788888888888888888888888888888888888888888888888


Q ss_pred             HHHHhcCcc
Q 036661          586 TMMKRNQVK  594 (615)
Q Consensus       586 ~~~~~~~~~  594 (615)
                      +++.+..+.
T Consensus       168 ~~~~~~~~~  176 (186)
T 3as5_A          168 KKANELDEG  176 (186)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHcCCC
Confidence            887765543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.45  E-value=1.4e-12  Score=128.95  Aligned_cols=234  Identities=12%  Similarity=0.052  Sum_probs=148.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHhhcccchhhHHHHHHHHHHhc----C-CCCchHH
Q 036661          327 WTAMISGYAQKGDLDEALRLFFAMEAA----GE-VPDLVTVLSMISGCGQSGALELGKWFDNYACSG----G-LKDNVMV  396 (615)
Q Consensus       327 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~  396 (615)
                      +..+...|...|++++|+..+++..+.    +. +.....+..+...+...|+++.|...++...+.    + .+....+
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  168 (411)
T 4a1s_A           89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA  168 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence            444444445555555555555444321    10 112233444444555555555555555544431    1 1122335


Q ss_pred             HHHHHHHHHhcCC-----------------hHHHHHHHhcCCC-----C----ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661          397 CNALIDMYSKCGS-----------------IGDARELFYALPE-----K----TVVSWTTMIAGCALNGEFVEALDLFHQ  450 (615)
Q Consensus       397 ~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~  450 (615)
                      +..+...|...|+                 +++|.+.+++...     .    ...++..+...+...|++++|+..+++
T Consensus       169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  248 (411)
T 4a1s_A          169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE  248 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            5556666666666                 6666666554432     1    224677788888899999999999888


Q ss_pred             HHHcCC-CCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 036661          451 MMELDL-RPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQS  521 (615)
Q Consensus       451 ~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~  521 (615)
                      ..+... .++    ...+..+...|...|++++|...+++......-..+    ..++..++.+|...|++++|.+.+++
T Consensus       249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (411)
T 4a1s_A          249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR  328 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            876310 012    136777888999999999999999988753221111    45677889999999999999999988


Q ss_pred             CC-C---CCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          522 MP-I---KSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       522 ~~-~---~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      .. .   .++    ..++..++..+...|++++|...+++++++.+.
T Consensus       329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            75 1   111    236777888899999999999999999987764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.44  E-value=2.1e-10  Score=117.95  Aligned_cols=438  Identities=10%  Similarity=-0.036  Sum_probs=282.5

Q ss_pred             ChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCC---HHHHHH
Q 036661          135 FLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCND---LKMAEL  211 (615)
Q Consensus       135 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~  211 (615)
                      ...+-+..|+.....+ +-|..+|..++..+...+.++.+..+++.++.. ++.....|...+..-.+.+.   ++.+..
T Consensus        47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~  124 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP  124 (679)
T ss_dssp             CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence            3445555566666654 358888999999998889999999999999876 45567788888888888888   999999


Q ss_pred             HHHhcccCC---CCcchHHHHHHHHhcCCCh--------hhHHHHHHHHHH-CCC-CCCH-HhHHHHHHhcc--------
Q 036661          212 VFRGIEEGL---RTVVSWNSIIGGCTYGDKF--------DDSLNFYRHMIY-DGF-RPDV-TTVVSLLSSCV--------  269 (615)
Q Consensus       212 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~--------  269 (615)
                      +|++.....   |++..|...+....+.++.        +.+.++|+..+. .|. .|+. ..|...+....        
T Consensus       125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~  204 (679)
T 4e6h_A          125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF  204 (679)
T ss_dssp             HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence            999988775   8888888888766554443        233466666544 355 4543 44444443221        


Q ss_pred             -CchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 036661          270 -CPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFF  348 (615)
Q Consensus       270 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  348 (615)
                       ..++++.+..+|..++......-..+|......-...+. ..+.+++               .-  ...+++.|...+.
T Consensus       205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~---------------~e--~~~~y~~Ar~~~~  266 (679)
T 4e6h_A          205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHI---------------GE--LSAQYMNARSLYQ  266 (679)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHH---------------HH--HHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHH---------------HH--hhHHHHHHHHHHH
Confidence             123456677777777642111111222211111000000 0011111               10  0112333333343


Q ss_pred             HHHHC--CC----C-----------C-----CH---HHHHHHHHhhcccc-------hhhHHHHHHHHHHhcCCCCchHH
Q 036661          349 AMEAA--GE----V-----------P-----DL---VTVLSMISGCGQSG-------ALELGKWFDNYACSGGLKDNVMV  396 (615)
Q Consensus       349 ~~~~~--~~----~-----------~-----~~---~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~  396 (615)
                      ++...  ++    +           |     +.   ..|...+.---..+       ..+.+..+|+++.... +....+
T Consensus       267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~l  345 (679)
T 4e6h_A          267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEI  345 (679)
T ss_dssp             HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHH
T ss_pred             HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHH
Confidence            32210  11    0           1     00   12222222211111       2334566777777653 557788


Q ss_pred             HHHHHHHHHhcCChHHHH-HHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---------CCC----
Q 036661          397 CNALIDMYSKCGSIGDAR-ELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDL---------RPN----  459 (615)
Q Consensus       397 ~~~l~~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~p~----  459 (615)
                      |...+..+...|+.+.|. ++|+....   .+...|...+....+.|++++|..+|+++.+...         .|+    
T Consensus       346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~  425 (679)
T 4e6h_A          346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA  425 (679)
T ss_dssp             HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence            888888888899998896 99887655   3556677888888899999999999999986410         142    


Q ss_pred             --------HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCC--CCCCh
Q 036661          460 --------RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG-KLKEALDFVQSMP--IKSDA  528 (615)
Q Consensus       460 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~p~~  528 (615)
                              ...|...+....+.|..+.|..+|.++.+.. -.+....|...+..-.+.| +.+.|.++|+...  .+.+.
T Consensus       426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~  504 (679)
T 4e6h_A          426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG  504 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred             hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch
Confidence                    2367777777788899999999999998641 1223445555555545554 5899999999886  44456


Q ss_pred             hhHHHHHHHHHHhCChhHHHHHHHHHhccCCC---CCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          529 GIWGTLLCACKIHRNIEIGEYVAYRLFELEPH---SAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      ..|..++......|+.+.|..+|+++++..|+   ....|..+...-...|+.+.+.++.+++.+..+.
T Consensus       505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            67778888888899999999999999998883   4567888888888999999999999999987764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.44  E-value=1.4e-13  Score=130.41  Aligned_cols=237  Identities=13%  Similarity=0.101  Sum_probs=132.5

Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhc------CCC
Q 036661          325 VSWTAMISGYAQKGDLDEALRLFFAMEAA-------GEVPDLVTVLSMISGCGQSGALELGKWFDNYACSG------GLK  391 (615)
Q Consensus       325 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~  391 (615)
                      .++..+...+...|++++|...++++.+.       ..+.....+..+...+...|+++.|...++...+.      +..
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  107 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH  107 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            35666777777777888777777776652       11222334444455555555555555555544331      000


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HHHHH
Q 036661          392 DNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL------DLRPN-RVTFL  464 (615)
Q Consensus       392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~  464 (615)
                      |                              ....++..+...+...|++++|...++++.+.      +-.|+ ...+.
T Consensus       108 ~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  157 (311)
T 3nf1_A          108 P------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN  157 (311)
T ss_dssp             H------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             h------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            0                              11234555666666666666666666666553      21222 23566


Q ss_pred             HHHHHhhccCchHHHHHHHHHHHHhhC-----CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-C---------CCCh
Q 036661          465 AVLQACTHAGFLEKGWGYFNLMTKVYQ-----VNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP-I---------KSDA  528 (615)
Q Consensus       465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---------~p~~  528 (615)
                      .+...+...|++++|..+++++.+...     ..| ....+..++.+|...|++++|.+.++++. .         .+..
T Consensus       158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  237 (311)
T 3nf1_A          158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN  237 (311)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence            666777777777777777777664311     012 23456667777777777777777776654 0         1111


Q ss_pred             -h------hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          529 -G------IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       529 -~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                       .      .+......+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence             1      11222233344567777777888888888888888999999999999999999999887653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.43  E-value=9.1e-12  Score=117.43  Aligned_cols=221  Identities=11%  Similarity=0.011  Sum_probs=156.7

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHhhcc-------cchh-------hHHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 036661          341 DEALRLFFAMEAAGEVPDLVTVLSMISGCGQ-------SGAL-------ELGKWFDNYACSGGLKDNVMVCNALIDMYSK  406 (615)
Q Consensus       341 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (615)
                      ++|...|++..... +.+...|..+...+..       .|+.       ++|..+++...+.-.+.+...+..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            67888888887752 4556666666666542       3664       7888888888773224556678888888888


Q ss_pred             cCChHHHHHHHhcCCC--C-ChH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-hccCchHHHHH
Q 036661          407 CGSIGDARELFYALPE--K-TVV-SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC-THAGFLEKGWG  481 (615)
Q Consensus       407 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~  481 (615)
                      .|++++|.++|+++.+  | +.. .|..++..+.+.|++++|..+|++..+.+ +++...|....... ...|++++|..
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8888888888887665  2 343 78888888888888888888888888763 23334444333332 23688888888


Q ss_pred             HHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CC--ChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661          482 YFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPI----KS--DAGIWGTLLCACKIHRNIEIGEYVAYRLF  555 (615)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  555 (615)
                      +|++..+..  +.+...|..++..+.+.|++++|..+|+++..    +|  ....|..++......|+.+.|..++++++
T Consensus       191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888887542  33566777888888888888888888888752    33  24467777777778888888888888888


Q ss_pred             ccCCCCCCCh
Q 036661          556 ELEPHSAAPY  565 (615)
Q Consensus       556 ~~~p~~~~~~  565 (615)
                      +..|+++...
T Consensus       269 ~~~p~~~~~~  278 (308)
T 2ond_A          269 TAFREEYEGK  278 (308)
T ss_dssp             HHTTTTTSSC
T ss_pred             HHcccccccc
Confidence            8888765443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.43  E-value=1.8e-12  Score=126.78  Aligned_cols=224  Identities=10%  Similarity=-0.017  Sum_probs=147.6

Q ss_pred             HhhcccchhhHHHHHHHHHHhc--CCCC---chHHHHHHHHHHHhcCChHHHHHHHhcCCC-----C-----ChHHHHHH
Q 036661          367 SGCGQSGALELGKWFDNYACSG--GLKD---NVMVCNALIDMYSKCGSIGDARELFYALPE-----K-----TVVSWTTM  431 (615)
Q Consensus       367 ~~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l  431 (615)
                      ..+...|+++.|...++...+.  ..+.   ...++..+...|...|+++.|...+++..+     +     ...+++.+
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            3345566666666666666542  1111   234566667777777777777666665432     1     12467777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhh---CC-CCChhHHHHH
Q 036661          432 IAGCALNGEFVEALDLFHQMMELDL-RPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVY---QV-NPELNHYSCM  502 (615)
Q Consensus       432 ~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l  502 (615)
                      ...|...|++++|+..+++..+... .++    ..++..+..+|...|++++|...+++..+-.   +. +....++..+
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  270 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI  270 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            7888888888888888887765310 111    1367777888888888888888888876421   12 2224567778


Q ss_pred             HHHHHhcCChHHHHHHHHhCC------CCCCh-hhHHHHHHHHHHhCC---hhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661          503 ADLLGRKGKLKEALDFVQSMP------IKSDA-GIWGTLLCACKIHRN---IEIGEYVAYRLFELEPHSAAPYVEMANIY  572 (615)
Q Consensus       503 ~~~~~~~g~~~~A~~~~~~~~------~~p~~-~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  572 (615)
                      +.+|.+.|++++|.+.+++..      ..|.. ..+..+...+...|+   .++|...+++. ...|.....+..++.+|
T Consensus       271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y  349 (383)
T 3ulq_A          271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY  349 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence            888888888888888888765      12221 224556666777777   77777777776 33344456778889999


Q ss_pred             HccCChHHHHHHHHHHHhc
Q 036661          573 ALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       573 ~~~g~~~~A~~~~~~~~~~  591 (615)
                      ...|++++|.+++++..+.
T Consensus       350 ~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          350 HERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            9999999999999888763

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.43  E-value=2.8e-12  Score=115.19  Aligned_cols=167  Identities=10%  Similarity=0.004  Sum_probs=102.2

Q ss_pred             ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHH
Q 036661          424 TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCM  502 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l  502 (615)
                      ++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..+++..+   ..| +...+..+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l   82 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGK   82 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHH
Confidence            34455555566666666666666666666653224555555566666666666666666666653   223 23455556


Q ss_pred             HHHHHhcCChHHHHHHHHhCC-CCC-Ch-------hhHHHHHHHHHHhCChhHHHHHHHHHhccCCC--CCCChHhHHHH
Q 036661          503 ADLLGRKGKLKEALDFVQSMP-IKS-DA-------GIWGTLLCACKIHRNIEIGEYVAYRLFELEPH--SAAPYVEMANI  571 (615)
Q Consensus       503 ~~~~~~~g~~~~A~~~~~~~~-~~p-~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~  571 (615)
                      +.+|...|++++|.+.+++.. ..| +.       ..+..++..+...|++++|+..++++++++|+  ++.++..++.+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            666666666666666666654 222 22       23555555566666666666666666666666  66666666666


Q ss_pred             HHccCCh---------------------------HHHHHHHHHHHhcCc
Q 036661          572 YALGGRW---------------------------DGVANLRTMMKRNQV  593 (615)
Q Consensus       572 ~~~~g~~---------------------------~~A~~~~~~~~~~~~  593 (615)
                      |...|+.                           ++|++.+++..+..+
T Consensus       163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p  211 (228)
T 4i17_A          163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP  211 (228)
T ss_dssp             HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            6666666                           999999999887654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.42  E-value=2.7e-12  Score=122.93  Aligned_cols=135  Identities=14%  Similarity=0.092  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----h
Q 036661          426 VSWTTMIAGCALNGEFVEALDLFHQMMELDL-RPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----L  496 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~  496 (615)
                      ..+..+...+...|++++|...+++..+... .++    ..++..+...+...|++++|...+++......-.++    .
T Consensus       184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  263 (338)
T 3ro2_A          184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA  263 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            4677778888888899999888888765310 111    236777888888999999999999888753222222    4


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          497 NHYSCMADLLGRKGKLKEALDFVQSMP-I---KSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      ..+..++.++...|++++|...++++. .   ..+    ..++..+...+...|++++|...+++++++.+.
T Consensus       264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            567778899999999999999998875 1   111    336677888999999999999999999988765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.42  E-value=1.2e-12  Score=131.09  Aligned_cols=180  Identities=7%  Similarity=-0.046  Sum_probs=157.7

Q ss_pred             hHHHHHHHhcCCC---CChHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHH
Q 036661          410 IGDARELFYALPE---KTVVSWTTMIAGCALNGEF-VEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNL  485 (615)
Q Consensus       410 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  485 (615)
                      ++++...+++...   .+...+..+...+...|++ ++|+..|++..+.. +.+...+..+..+|...|++++|...|++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4555555554333   4678899999999999999 99999999999873 33467999999999999999999999999


Q ss_pred             HHHhhCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhCC--CCCChhhHHHHHHHHHHh--------CChhH
Q 036661          486 MTKVYQVNPELNHYSCMADLLGRK---------GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH--------RNIEI  546 (615)
Q Consensus       486 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~--------~~~~~  546 (615)
                      +.   ...|+...+..++.+|...         |++++|.+.++++.  .+.+...|..++.++...        |++++
T Consensus       163 al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          163 AL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            98   4468888899999999999         99999999999987  444577899999999988        99999


Q ss_pred             HHHHHHHHhccCC---CCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          547 GEYVAYRLFELEP---HSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       547 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      |+..++++++++|   +++..|..++.+|...|++++|++.+++..+..+
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  289 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP  289 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999999   9999999999999999999999999999987654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.42  E-value=3.4e-11  Score=113.51  Aligned_cols=214  Identities=6%  Similarity=-0.013  Sum_probs=144.6

Q ss_pred             hHHHHHHHHHHhcCCCCchHHHHHHHHHHHh-------cCCh-------HHHHHHHhcCCC----CChHHHHHHHHHHHh
Q 036661          376 ELGKWFDNYACSGGLKDNVMVCNALIDMYSK-------CGSI-------GDARELFYALPE----KTVVSWTTMIAGCAL  437 (615)
Q Consensus       376 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~----~~~~~~~~l~~~~~~  437 (615)
                      ++|..+|+.+.... +.++..|..++..+..       .|++       ++|..+|++...    .+...|..++..+..
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            46666777666643 5566666666666543       4665       778877776543    244577777777888


Q ss_pred             cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH-hcCChHH
Q 036661          438 NGEFVEALDLFHQMMELDLRPN-RV-TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLG-RKGKLKE  514 (615)
Q Consensus       438 ~~~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~  514 (615)
                      .|++++|..+|+++.+.  .|+ .. .|..++..+.+.|++++|..+|+++.+.  .+++...|...+.... ..|++++
T Consensus       112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred             cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence            88888888888888774  454 23 6777777777778888888888887742  1233444443333322 2688888


Q ss_pred             HHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhcc---CCC-CCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661          515 ALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFEL---EPH-SAAPYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       515 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                      |.++|+++.  .+.+...|..++..+.+.|++++|+.+++++++.   .|+ +...|..++..+.+.|++++|..+++++
T Consensus       188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888887775  3334567777777777778888888888888874   443 4557777778888888888888888887


Q ss_pred             HhcCcc
Q 036661          589 KRNQVK  594 (615)
Q Consensus       589 ~~~~~~  594 (615)
                      .+..+.
T Consensus       268 ~~~~p~  273 (308)
T 2ond_A          268 FTAFRE  273 (308)
T ss_dssp             HHHTTT
T ss_pred             HHHccc
Confidence            766553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.39  E-value=2.2e-11  Score=105.12  Aligned_cols=169  Identities=10%  Similarity=-0.014  Sum_probs=145.7

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 036661          394 VMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQAC  470 (615)
Q Consensus       394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  470 (615)
                      ...+..+...+...|++++|.+.++++..   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            34566778889999999999999998876   366788999999999999999999999999873 44667888899999


Q ss_pred             hccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHH
Q 036661          471 THAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGE  548 (615)
Q Consensus       471 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~  548 (615)
                      ...|++++|.++++++.+.  .+.+...+..++.++...|++++|.+.++++.  .+.+...+..++..+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999863  34556788889999999999999999999986  4445678888999999999999999


Q ss_pred             HHHHHHhccCCCCCCCh
Q 036661          549 YVAYRLFELEPHSAAPY  565 (615)
Q Consensus       549 ~~~~~~~~~~p~~~~~~  565 (615)
                      ..++++++..|+++...
T Consensus       165 ~~~~~~~~~~~~~~~~~  181 (186)
T 3as5_A          165 PHFKKANELDEGASVEL  181 (186)
T ss_dssp             HHHHHHHHHHHCCCGGG
T ss_pred             HHHHHHHHcCCCchhhH
Confidence            99999999999876544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.39  E-value=9.9e-12  Score=111.58  Aligned_cols=206  Identities=10%  Similarity=-0.010  Sum_probs=144.5

Q ss_pred             CCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHH
Q 036661          357 PDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIA  433 (615)
Q Consensus       357 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~  433 (615)
                      .|+..+......+...|++++|...++...+...+++...+..+..++...|++++|.+.+++...   .+...|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            456677777777888888888888888888766436666666688888888888888888876654   34567778888


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---hhHHHHHH
Q 036661          434 GCALNGEFVEALDLFHQMMELDLRPNR-------VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMA  503 (615)
Q Consensus       434 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~  503 (615)
                      ++...|++++|+..+++..+.. +.+.       ..+..+...+...|++++|+..|+++.   ...|+   ...+..++
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~  160 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence            8888888888888888888752 2233       346666777778888888888888887   33554   45666777


Q ss_pred             HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          504 DLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       504 ~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      .+|...|+.     .++++.  ...+...+...  .....+.+++|+..++++++++|+++.+...++.+..
T Consensus       161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          161 VLFYNNGAD-----VLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHHH-----HHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHH-----HHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            777665543     222222  11222222222  2334567899999999999999999888877776654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.39  E-value=9e-12  Score=121.73  Aligned_cols=230  Identities=10%  Similarity=0.064  Sum_probs=163.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHhhcccchhhHHHHHHHHHHhc--CC----CCchHHHH
Q 036661          330 MISGYAQKGDLDEALRLFFAMEAA----GEVP-DLVTVLSMISGCGQSGALELGKWFDNYACSG--GL----KDNVMVCN  398 (615)
Q Consensus       330 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~  398 (615)
                      ....+...|++++|+..+++....    +..+ ...++..+...+...|+++.|...+....+.  ..    +....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            344455666666776666666542    1111 2245556666666677777777666666541  11    11234677


Q ss_pred             HHHHHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHH
Q 036661          399 ALIDMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGCALNGEFVEALDLFHQMMEL----DLRPN-RVTFL  464 (615)
Q Consensus       399 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~  464 (615)
                      .+...|...|++++|.+.+++...     ++    ..++..+..+|...|++++|+..+++..+.    +..|+ ..++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            778888888888888888876653     11    247888999999999999999999998872    32244 46788


Q ss_pred             HHHHHhhccCchHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-hhhHHHHHHH
Q 036661          465 AVLQACTHAGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGRKGK---LKEALDFVQSMPIKSD-AGIWGTLLCA  537 (615)
Q Consensus       465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~  537 (615)
                      .+..++...|++++|...+++..+...-.++   ...+..+...+...|+   +++|+.++++....|+ ...+..++..
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  348 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY  348 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            8999999999999999999998753221112   2335678889999999   8999999999874443 3466778899


Q ss_pred             HHHhCChhHHHHHHHHHhccCC
Q 036661          538 CKIHRNIEIGEYVAYRLFELEP  559 (615)
Q Consensus       538 ~~~~~~~~~A~~~~~~~~~~~p  559 (615)
                      +...|++++|...+++++++..
T Consensus       349 y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          349 YHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999987654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.38  E-value=1.5e-10  Score=112.64  Aligned_cols=155  Identities=12%  Similarity=0.011  Sum_probs=69.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHhcc---CCC-Ccc----cHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHHHH
Q 036661          298 TLISMYSKCGDIDSARFLFDGM---CDR-TRV----SWTAMISGYAQKGDLDEALRLFFAMEAAGE-VPDL----VTVLS  364 (615)
Q Consensus       298 ~l~~~~~~~~~~~~a~~~~~~~---~~~-~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~  364 (615)
                      .....+...|++++|...+++.   .+. +..    .++.+...+...|++++|...+++...... ..+.    .++..
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   98 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   98 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3344555666666666666553   111 111    334445555666666666666665543210 0111    12333


Q ss_pred             HHHhhcccchhhHHHHHHHHHHhc----CCC--C-chHHHHHHHHHHHhcCChHHHHHHHhcCCC--C------ChHHHH
Q 036661          365 MISGCGQSGALELGKWFDNYACSG----GLK--D-NVMVCNALIDMYSKCGSIGDARELFYALPE--K------TVVSWT  429 (615)
Q Consensus       365 ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~  429 (615)
                      +...+...|+++.|...++...+.    +..  | ....+..+...+...|++++|...+++...  +      ...++.
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  178 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            444455555555555555554431    111  1 122333344444555555555544443221  0      112334


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHH
Q 036661          430 TMIAGCALNGEFVEALDLFHQMM  452 (615)
Q Consensus       430 ~l~~~~~~~~~~~~a~~~~~~~~  452 (615)
                      .+...+...|++++|...+++..
T Consensus       179 ~la~~~~~~g~~~~A~~~l~~a~  201 (373)
T 1hz4_A          179 MLIQCSLARGDLDNARSQLNRLE  201 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            44444444555555555554444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.35  E-value=2.9e-12  Score=121.26  Aligned_cols=245  Identities=12%  Similarity=0.080  Sum_probs=154.9

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhccCC--------C---CcccHHHHHHHHHhcCChhHHHHHHHHHHHC------C
Q 036661          292 DVSVINTLISMYSKCGDIDSARFLFDGMCD--------R---TRVSWTAMISGYAQKGDLDEALRLFFAMEAA------G  354 (615)
Q Consensus       292 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~  354 (615)
                      ...++..+...+...|++++|..+|+++..        .   ....+..+...|...|++++|...+++....      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            456788899999999999999999988733        2   2346788899999999999999999998764      2


Q ss_pred             CCC-CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHH
Q 036661          355 EVP-DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIA  433 (615)
Q Consensus       355 ~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~  433 (615)
                      ..| ....+..+...+...|+++.|...++.+.+..               .+         .+..-.......+..+..
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---------------~~---------~~~~~~~~~~~~~~~la~  161 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR---------------EK---------VLGKDHPDVAKQLNNLAL  161 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH---------------HH---------HHCTTCHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH---------------HH---------hcCCCChHHHHHHHHHHH
Confidence            222 34566677777778888888888777765421               00         000000011234556666


Q ss_pred             HHHhcCChHHHHHHHHHHHHc------CCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhh------CCCCCh----
Q 036661          434 GCALNGEFVEALDLFHQMMEL------DLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVY------QVNPEL----  496 (615)
Q Consensus       434 ~~~~~~~~~~a~~~~~~~~~~------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~----  496 (615)
                      .+...|++++|+.+++++.+.      +-.|+. .++..+..++...|++++|..+++++.+..      ...+..    
T Consensus       162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  241 (311)
T 3nf1_A          162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW  241 (311)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence            677777777777777776653      213332 466777778888888888888888776421      111111    


Q ss_pred             ---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          497 ---NHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       497 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                         ..+..+...+...+.+.+|...++... ..| ...++..++.++...|++++|...+++++++.|.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence               122233334445566666667777665 333 3457788899999999999999999999998775

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.34  E-value=1.3e-11  Score=120.21  Aligned_cols=222  Identities=11%  Similarity=-0.004  Sum_probs=150.6

Q ss_pred             hhcccchhhHHHHHHHHHHhcC--CC---CchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----C-----ChHHHHHHH
Q 036661          368 GCGQSGALELGKWFDNYACSGG--LK---DNVMVCNALIDMYSKCGSIGDARELFYALPE-----K-----TVVSWTTMI  432 (615)
Q Consensus       368 ~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~  432 (615)
                      .+...|+++.|...++...+..  .+   ....++..+...|...|+++.|...+++...     +     ...+++.+.
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            3456677777777777665421  11   1234566677777788887777776665432     1     134677788


Q ss_pred             HHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhh---CCCCChhHHHHHHH
Q 036661          433 AGCALNGEFVEALDLFHQMMEL----DLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVY---QVNPELNHYSCMAD  504 (615)
Q Consensus       433 ~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~  504 (615)
                      .+|...|++++|.+.+++..+.    +-.+. ..++..+..+|...|++++|...+++.....   +.+....++..++.
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  269 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW  269 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence            8888889999998888887662    11111 2467778888888999999999888887521   12222556778888


Q ss_pred             HHHhcCChHHHHHHHHhCC------CCCCh-hhHHHHHHHHHHhCC---hhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661          505 LLGRKGKLKEALDFVQSMP------IKSDA-GIWGTLLCACKIHRN---IEIGEYVAYRLFELEPHSAAPYVEMANIYAL  574 (615)
Q Consensus       505 ~~~~~g~~~~A~~~~~~~~------~~p~~-~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  574 (615)
                      ++.+.|++++|.+.+++..      ..|.. ..+..+...+...++   +++|...+++. ...|.....+..++.+|..
T Consensus       270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~  348 (378)
T 3q15_A          270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES  348 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence            9999999999999988764      12222 234445555666677   77777777762 2334445677789999999


Q ss_pred             cCChHHHHHHHHHHHh
Q 036661          575 GGRWDGVANLRTMMKR  590 (615)
Q Consensus       575 ~g~~~~A~~~~~~~~~  590 (615)
                      .|++++|.+.+++..+
T Consensus       349 ~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          349 SCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999988865

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.31  E-value=4e-11  Score=111.96  Aligned_cols=202  Identities=11%  Similarity=0.017  Sum_probs=140.0

Q ss_pred             hhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHHHhcCChHHH
Q 036661          374 ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGCALNGEFVEA  444 (615)
Q Consensus       374 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a  444 (615)
                      +++.|...+...               ...|...|++++|.+.|++...     .+    ..+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            466666665554               3346667777777776665433     11    35778888888889999999


Q ss_pred             HHHHHHHHHcCC---CCC--HHHHHHHHHHhhcc-CchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHH
Q 036661          445 LDLFHQMMELDL---RPN--RVTFLAVLQACTHA-GFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKE  514 (615)
Q Consensus       445 ~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~  514 (615)
                      +..+++..+...   .+.  ..++..+..+|... |++++|+..|++..+...-..+    ..++..++.++.+.|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            988888876311   111  34678888889986 9999999999998753221111    3467888999999999999


Q ss_pred             HHHHHHhCC-CCCChh--------hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC-----hHhHHHHHH--ccCCh
Q 036661          515 ALDFVQSMP-IKSDAG--------IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP-----YVEMANIYA--LGGRW  578 (615)
Q Consensus       515 A~~~~~~~~-~~p~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~  578 (615)
                      |++.++++. ..|+..        .+..++.++...|++++|+..++++++++|+.+..     +..++.+|.  ..+++
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~  256 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence            999999876 333221        45677788889999999999999999999986654     344566664  55778


Q ss_pred             HHHHHHHHHHHh
Q 036661          579 DGVANLRTMMKR  590 (615)
Q Consensus       579 ~~A~~~~~~~~~  590 (615)
                      ++|++.|+++..
T Consensus       257 ~~A~~~~~~~~~  268 (292)
T 1qqe_A          257 SEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHHTTSSC
T ss_pred             HHHHHHhccCCc
Confidence            888888866543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.29  E-value=1.3e-10  Score=103.82  Aligned_cols=65  Identities=8%  Similarity=-0.033  Sum_probs=57.7

Q ss_pred             HHHHHHHHhCChhHHHHHHHHHhccCCCCC---CChHhHHHHHHccCChHHHHHHHHHHHhcCcccCC
Q 036661          533 TLLCACKIHRNIEIGEYVAYRLFELEPHSA---APYVEMANIYALGGRWDGVANLRTMMKRNQVKKFP  597 (615)
Q Consensus       533 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  597 (615)
                      .++..+...|++++|+..++++++..|+++   .++..++.+|.+.|++++|++.++++...++....
T Consensus       152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence            456778899999999999999999999976   57999999999999999999999999988775544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.27  E-value=1.4e-10  Score=106.52  Aligned_cols=183  Identities=13%  Similarity=0.042  Sum_probs=95.4

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 036661          393 NVMVCNALIDMYSKCGSIGDARELFYALPE--K-T---VVSWTTMIAGCALNGEFVEALDLFHQMMELDL-RPN-RVTFL  464 (615)
Q Consensus       393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-~~~~~  464 (615)
                      +...+..+...+.+.|++++|...|+++..  | +   ...+..+..++...|++++|+..|+++.+... .|. ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            344445555555666666666666655543  2 2   34555555566666666666666666655421 111 23444


Q ss_pred             HHHHHhhc--------cCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHH
Q 036661          465 AVLQACTH--------AGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLL  535 (615)
Q Consensus       465 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~  535 (615)
                      .+..++..        .|++++|...|+++.+.   .|+. .....+.......++.               ...+..++
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la  155 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA  155 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence            45555555        56666666666665543   2221 1111110000000000               00124456


Q ss_pred             HHHHHhCChhHHHHHHHHHhccCCCCC---CChHhHHHHHHcc----------CChHHHHHHHHHHHhcCc
Q 036661          536 CACKIHRNIEIGEYVAYRLFELEPHSA---APYVEMANIYALG----------GRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       536 ~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~  593 (615)
                      ..+...|++++|+..++++++..|+++   ..+..++.+|...          |++++|.+.++++.+..+
T Consensus       156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p  226 (261)
T 3qky_A          156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP  226 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence            666677777777777777777777643   3666677777655          667777777777765443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.25  E-value=4.1e-10  Score=102.44  Aligned_cols=242  Identities=10%  Similarity=-0.009  Sum_probs=135.2

Q ss_pred             HHHHhcCCHHHHHHHHhccCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHH
Q 036661          301 SMYSKCGDIDSARFLFDGMCDRTRV-SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGK  379 (615)
Q Consensus       301 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  379 (615)
                      +-..-.|.+..++.-...+.+.+.. .-.-+.++|...|++...         ..-.|....+..+...+. .+    +.
T Consensus        21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~-~~----a~   86 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLD-TK----NI   86 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHT-TT----CC
T ss_pred             HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhc-cc----HH
Confidence            3445568888887766665433322 223345777777776631         112344434443333332 11    55


Q ss_pred             HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036661          380 WFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-----KTVVSWTTMIAGCALNGEFVEALDLFHQMMEL  454 (615)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  454 (615)
                      ..++.....+ +++...+..+..++...|++++|++++.+...     .+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus        87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~  165 (310)
T 3mv2_B           87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA  165 (310)
T ss_dssp             HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            5666555544 34444445666777777777777777776533     23456666677777777777777777777664


Q ss_pred             CCCC-----CHHHHHHHHHH--hhccC--chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-
Q 036661          455 DLRP-----NRVTFLAVLQA--CTHAG--FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPI-  524 (615)
Q Consensus       455 ~~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-  524 (615)
                        .|     +..+...++.+  ....|  ++++|..+|+++...   .|+......+..++.+.|++++|.+.++.+.. 
T Consensus       166 --~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          166 --IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             --SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             --CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              55     24444445444  22223  677777777776632   34422222233366677777777777665431 


Q ss_pred             ----------CC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661          525 ----------KS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP  564 (615)
Q Consensus       525 ----------~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  564 (615)
                                .| ++.++..++......|+  +|.++++++.+..|++|.+
T Consensus       241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i  289 (310)
T 3mv2_B          241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI  289 (310)
T ss_dssp             HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred             cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence                      13 33444455544455565  6677777777777775543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.24  E-value=3.7e-11  Score=111.71  Aligned_cols=197  Identities=15%  Similarity=0.189  Sum_probs=121.4

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHhcCCC-----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 036661          394 VMVCNALIDMYSKCGSIGDARELFYALPE-----------KTVVSWTTMIAGCALNGEFVEALDLFHQMMEL------DL  456 (615)
Q Consensus       394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~  456 (615)
                      ..++..+...|...|++++|...++++..           ....++..+...|...|++++|...++++.+.      .-
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            44555566666666666666666654431           12346677777777788888888877777653      11


Q ss_pred             CCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhh-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC------
Q 036661          457 RPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVY-----QVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP------  523 (615)
Q Consensus       457 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------  523 (615)
                      .|+ ..++..+...+...|++++|..+++++.+..     +..| ...++..++.+|.+.|++++|.++++++.      
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            232 3467777778888888888888888876431     0022 24567778888888888888888887764      


Q ss_pred             ----CCCCh-hhHHHHHHHHHHhC------ChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          524 ----IKSDA-GIWGTLLCACKIHR------NIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       524 ----~~p~~-~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                          ..+.. ..+..+.......+      .+..+...++......|..+.++..++.+|...|++++|.+++++..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                12222 23333333333322      233344444444444566667888999999999999999999988765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.24  E-value=5.8e-10  Score=108.54  Aligned_cols=227  Identities=8%  Similarity=0.040  Sum_probs=167.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHhhcccchhhHHHHHHHHHHhc--CC---C-CchHHHH
Q 036661          330 MISGYAQKGDLDEALRLFFAMEAAGE-VPD----LVTVLSMISGCGQSGALELGKWFDNYACSG--GL---K-DNVMVCN  398 (615)
Q Consensus       330 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~-~~~~~~~  398 (615)
                      ....+...|++++|+..|++...... .++    ..++..+...+...|+++.|...+....+.  ..   . ....+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34456677888888888887765311 122    345666777778888888888887776652  11   1 1245677


Q ss_pred             HHHHHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCC-HHHH
Q 036661          399 ALIDMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGCALNGEFVEALDLFHQMME-----LDLRPN-RVTF  463 (615)
Q Consensus       399 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~-~~~~  463 (615)
                      .+...|...|++++|.+.+++...     ++    ..++..+..+|...|++++|+..+++..+     .  .|. ..++
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~  264 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV--PDLLPKVL  264 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC--GGGHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC--ChhHHHHH
Confidence            788888999999998888876554     12    24678889999999999999999999887     3  333 4678


Q ss_pred             HHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-hhhHHHHHH
Q 036661          464 LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGRKGK---LKEALDFVQSMPIKSD-AGIWGTLLC  536 (615)
Q Consensus       464 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~  536 (615)
                      ..+..++.+.|++++|..++++..+...-.++   ...+..+...+...|+   +++|+..+++....|+ ...+..++.
T Consensus       265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~  344 (378)
T 3q15_A          265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA  344 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            88899999999999999999998864322122   3356667777888888   8999999998763333 345677888


Q ss_pred             HHHHhCChhHHHHHHHHHhccC
Q 036661          537 ACKIHRNIEIGEYVAYRLFELE  558 (615)
Q Consensus       537 ~~~~~~~~~~A~~~~~~~~~~~  558 (615)
                      .|...|++++|...++++++..
T Consensus       345 ~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          345 VFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999998643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.21  E-value=1e-11  Score=102.84  Aligned_cols=141  Identities=9%  Similarity=-0.020  Sum_probs=92.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC
Q 036661          433 AGCALNGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGK  511 (615)
Q Consensus       433 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  511 (615)
                      ..+...|++++|+..++.....  .|+. ..+..+...|.+.|++++|++.|+++.+.  -+-+...|..++.+|.+.|+
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence            3344456666666666665543  3333 34555666777777777777777777642  12235566677777777777


Q ss_pred             hHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHH-HHHHHhccCCCCCCChHhHHHHHHccCC
Q 036661          512 LKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEY-VAYRLFELEPHSAAPYVEMANIYALGGR  577 (615)
Q Consensus       512 ~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~  577 (615)
                      +++|...|+++. ..| +...+..++..+.+.|++++|.+ +++++++++|+++.+|...+.++...|+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            777777777765 333 45677777777888887765544 4588888888888888888888877775

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.21  E-value=1e-10  Score=121.85  Aligned_cols=165  Identities=14%  Similarity=0.177  Sum_probs=140.9

Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 036661          391 KDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN-RVTFLAV  466 (615)
Q Consensus       391 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l  466 (615)
                      +.+...++.|..+|.+.|++++|++.|++..+   .+..+|..+..+|.+.|++++|+..|++.++.  .|+ ...+..+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL   83 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM   83 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            33467788889999999999999999987765   45678999999999999999999999999986  454 5789999


Q ss_pred             HHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCC
Q 036661          467 LQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRN  543 (615)
Q Consensus       467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~  543 (615)
                      ..++...|++++|++.|+++.+.   .|+ ...+..++.+|.+.|++++|++.|+++. ..| +...+..++.++...|+
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence            99999999999999999999853   454 6788999999999999999999999987 444 46688899999999999


Q ss_pred             hhHHHHHHHHHhccCCC
Q 036661          544 IEIGEYVAYRLFELEPH  560 (615)
Q Consensus       544 ~~~A~~~~~~~~~~~p~  560 (615)
                      +++|.+.+++++++.|+
T Consensus       161 ~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          161 WTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChh
Confidence            99999999999886653

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.21  E-value=1.9e-10  Score=105.59  Aligned_cols=205  Identities=11%  Similarity=-0.037  Sum_probs=148.8

Q ss_pred             CCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHhcCChHHHHHHHhcCCC--C----ChH
Q 036661          356 VPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDN---VMVCNALIDMYSKCGSIGDARELFYALPE--K----TVV  426 (615)
Q Consensus       356 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~  426 (615)
                      +.+...+......+...|+++.|...|+.+.+.. +.+   ...+..+..+|.+.|++++|...|+.+..  |    ...
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            4456777778888999999999999999998865 223   67788899999999999999999998765  2    135


Q ss_pred             HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh
Q 036661          427 SWTTMIAGCAL--------NGEFVEALDLFHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN  497 (615)
Q Consensus       427 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  497 (615)
                      .+..+..++..        .|++++|+..|+++++.  .|+. .....              ...+..+...     -..
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~  149 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LAR  149 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHH
Confidence            67788888888        99999999999999986  4443 22211              1111111110     012


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHHh----------CChhHHHHHHHHHhccCCCCC
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIH----------RNIEIGEYVAYRLFELEPHSA  562 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~  562 (615)
                      .+..++.+|.+.|++++|+..|+++. ..|+    ...+..++.++...          |++++|+..++++++..|+++
T Consensus       150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  229 (261)
T 3qky_A          150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP  229 (261)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence            24567788888899999988888875 3333    34566677777655          899999999999999999986


Q ss_pred             C---ChHhHHHHHHccCChHHHH
Q 036661          563 A---PYVEMANIYALGGRWDGVA  582 (615)
Q Consensus       563 ~---~~~~l~~~~~~~g~~~~A~  582 (615)
                      .   +...+..++.+.|+++++.
T Consensus       230 ~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          230 LLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhh
Confidence            4   4455666666666655443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.19  E-value=2.6e-10  Score=105.91  Aligned_cols=175  Identities=11%  Similarity=0.010  Sum_probs=141.3

Q ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhC
Q 036661          412 DARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ  491 (615)
Q Consensus       412 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  491 (615)
                      ...+.+......+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++++...  
T Consensus       104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--  180 (287)
T 3qou_A          104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--  180 (287)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence            34444444444455667778888899999999999999999873 335578888999999999999999999988743  


Q ss_pred             CCCChhHHHH-HHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC--CCChH
Q 036661          492 VNPELNHYSC-MADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS--AAPYV  566 (615)
Q Consensus       492 ~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~  566 (615)
                       .|+...... ....+.+.|+.++|.+.+++..  .+.+...+..++..+...|++++|+..++++++.+|++  +.++.
T Consensus       181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~  259 (287)
T 3qou_A          181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX  259 (287)
T ss_dssp             -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred             -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence             455443332 3344677888899999998876  44467788999999999999999999999999999998  78999


Q ss_pred             hHHHHHHccCChHHHHHHHHHHHh
Q 036661          567 EMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       567 ~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      .++.+|...|+.++|...+++...
T Consensus       260 ~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          260 TFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHH
Confidence            999999999999999999988754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.19  E-value=2.8e-10  Score=92.18  Aligned_cols=127  Identities=16%  Similarity=0.206  Sum_probs=77.9

Q ss_pred             HHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHh
Q 036661          464 LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH  541 (615)
Q Consensus       464 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~  541 (615)
                      ..+...+...|++++|..+++++.+.  .+.+...+..++..+...|++++|..+++++.  .+.+...+..++..+...
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            33444444555555555555554432  12233344445555555555555555555543  223344556666677777


Q ss_pred             CChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          542 RNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       542 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      |++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            777777777777777777777777788888888888888888887776544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.17  E-value=8.8e-11  Score=123.09  Aligned_cols=168  Identities=13%  Similarity=-0.064  Sum_probs=98.2

Q ss_pred             HhcCChHHHHHHHhcCC--------C---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 036661          405 SKCGSIGDARELFYALP--------E---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA  473 (615)
Q Consensus       405 ~~~g~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  473 (615)
                      ...|++++|.+.+++..        .   .+...+..+..++...|++++|+..++++.+.+ +.+...+..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            45566666666665544        1   234556666666666666666666666666642 22345566666666666


Q ss_pred             CchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHH
Q 036661          474 GFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYV  550 (615)
Q Consensus       474 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~  550 (615)
                      |++++|...|+++.+.   .| +...+..++.+|.+.|++++ .+.|+++.  .+.+...+..++.++...|++++|+..
T Consensus       481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6666666666666632   23 34455566666666666666 66666654  222344566666666666666666666


Q ss_pred             HHHHhccCCCCCCChHhHHHHHHccCC
Q 036661          551 AYRLFELEPHSAAPYVEMANIYALGGR  577 (615)
Q Consensus       551 ~~~~~~~~p~~~~~~~~l~~~~~~~g~  577 (615)
                      ++++++++|+++.++..++.+|...|+
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHhhcccCcccHHHHHHHHHHHHccCC
Confidence            666666666666666666666655443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.17  E-value=3e-09  Score=96.84  Aligned_cols=241  Identities=10%  Similarity=0.026  Sum_probs=168.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 036661          331 ISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSI  410 (615)
Q Consensus       331 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  410 (615)
                      ++-..-.|.+..++.-...+.   .........-+.+++...|++...         ..-.|....+..+... ...+  
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~--   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK--   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT--
T ss_pred             HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc--
Confidence            445566788888887433322   122223333445666666665532         1123333344444433 3333  


Q ss_pred             HHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCchHHHHHHHHHH
Q 036661          411 GDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP-NRVTFLAVLQACTHAGFLEKGWGYFNLM  486 (615)
Q Consensus       411 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~  486 (615)
                        |...|++...   ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.+++|
T Consensus        85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              6677776553   455666788899999999999999999988765323 3467888899999999999999999999


Q ss_pred             HHhhCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661          487 TKVYQVNP-----ELNHYSCMADL--LGRKG--KLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE  556 (615)
Q Consensus       487 ~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  556 (615)
                      .+.   .|     +..+...++.+  ....|  ++++|..+|+++. ..|+......+..++.+.|++++|++.++.+.+
T Consensus       163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            843   66     34555556655  33444  9999999999987 445533334444588899999999999998887


Q ss_pred             c----------CCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          557 L----------EPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       557 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      .          +|+++.++.+++.+....|+  +|.+++.++.+..+
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P  284 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH  284 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence            6          58899999899888888897  89999999988664

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.17  E-value=1.7e-10  Score=98.56  Aligned_cols=159  Identities=11%  Similarity=0.041  Sum_probs=106.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHH-H
Q 036661          428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADL-L  506 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~  506 (615)
                      +..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++...   .|+...+..+... +
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL   84 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence            3344555666666666666666665542 223455666666666667777777666666532   2232222222211 1


Q ss_pred             HhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC--CCChHhHHHHHHccCChHHHH
Q 036661          507 GRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS--AAPYVEMANIYALGGRWDGVA  582 (615)
Q Consensus       507 ~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~  582 (615)
                      ...++..+|...+++.. ..| +...+..++.++...|++++|+..++++++.+|+.  +..+..++.+|...|+.++|.
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            22233345677777665 344 56788888899999999999999999999999875  458999999999999999999


Q ss_pred             HHHHHHHh
Q 036661          583 NLRTMMKR  590 (615)
Q Consensus       583 ~~~~~~~~  590 (615)
                      ..|++...
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.16  E-value=3.6e-11  Score=99.48  Aligned_cols=125  Identities=13%  Similarity=0.003  Sum_probs=104.8

Q ss_pred             HHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhC
Q 036661          466 VLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHR  542 (615)
Q Consensus       466 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~  542 (615)
                      |...+...|++++|+..++....   ..|+ ...+..++.+|.+.|++++|.+.|+++.  .+.+..+|..++.++...|
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            45667788999999999998873   3343 3456679999999999999999999987  4446778999999999999


Q ss_pred             ChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHH-HHHHHhcCc
Q 036661          543 NIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANL-RTMMKRNQV  593 (615)
Q Consensus       543 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~  593 (615)
                      ++++|+..++++++++|+++.+|..++.+|.+.|++++|.+. +++..+..+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P  131 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP  131 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999999999887765 588877554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.14  E-value=4.8e-09  Score=101.90  Aligned_cols=266  Identities=12%  Similarity=-0.025  Sum_probs=195.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHhhcccchhhHHHHHHHHHHhcC--C-CC--chHHHH
Q 036661          328 TAMISGYAQKGDLDEALRLFFAMEAAGEVPDLV----TVLSMISGCGQSGALELGKWFDNYACSGG--L-KD--NVMVCN  398 (615)
Q Consensus       328 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~  398 (615)
                      ......+...|++++|...+++........+..    .+..+...+...|+++.|...++......  . .+  ....+.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            344556778999999999999988764223332    45556677888999999999999877521  1 11  123456


Q ss_pred             HHHHHHHhcCChHHHHHHHhcCCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHH
Q 036661          399 ALIDMYSKCGSIGDARELFYALPE-------K----TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLR--P--NRVTF  463 (615)
Q Consensus       399 ~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p--~~~~~  463 (615)
                      .+...+...|++++|.+.+++...       +    ....+..+...+...|++++|...+++..+....  +  ...++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            778889999999999998886543       1    1235667888899999999999999998875322  1  23567


Q ss_pred             HHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----hhhHH
Q 036661          464 LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYS-----CMADLLGRKGKLKEALDFVQSMP-IKSD-----AGIWG  532 (615)
Q Consensus       464 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~  532 (615)
                      ..+...+...|++++|...+++......-......+.     ..+..+...|++++|...+++.. ..|.     ...+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            7788899999999999999999875422111111121     23355789999999999999987 2221     22456


Q ss_pred             HHHHHHHHhCChhHHHHHHHHHhccCCCCCC------ChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          533 TLLCACKIHRNIEIGEYVAYRLFELEPHSAA------PYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       533 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      .+...+...|++++|...++++++..+....      .+..++.+|...|++++|...+++..+...
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence            7778889999999999999999998776433      344568899999999999999999887643

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.13  E-value=2.2e-09  Score=94.64  Aligned_cols=162  Identities=6%  Similarity=-0.086  Sum_probs=134.6

Q ss_pred             CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC----chHHHHHHHHHHHHhhCCCCChhH
Q 036661          423 KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAG----FLEKGWGYFNLMTKVYQVNPELNH  498 (615)
Q Consensus       423 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~  498 (615)
                      .++..+..+...|...+++++|+..|++..+.|   +...+..|...|.. +    ++++|..+|++..+.    -+...
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a   87 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG   87 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence            466777778888888899999999999998865   55677777777877 6    899999999998742    35667


Q ss_pred             HHHHHHHHHh----cCChHHHHHHHHhCC-CCCC---hhhHHHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChH
Q 036661          499 YSCMADLLGR----KGKLKEALDFVQSMP-IKSD---AGIWGTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYV  566 (615)
Q Consensus       499 ~~~l~~~~~~----~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~  566 (615)
                      +..|..+|..    .+++++|+++|++.. ..|.   ...+..+...|..    .+++++|+..++++.+. |.++..+.
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~  166 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY  166 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence            7788888887    889999999999987 4442   6788888888888    78999999999999998 67788999


Q ss_pred             hHHHHHHcc-C-----ChHHHHHHHHHHHhcCc
Q 036661          567 EMANIYALG-G-----RWDGVANLRTMMKRNQV  593 (615)
Q Consensus       567 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~  593 (615)
                      .|+.+|... |     ++++|.+.+++..+.|.
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            999999864 3     89999999999988775

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.13  E-value=7.2e-10  Score=103.39  Aligned_cols=174  Identities=9%  Similarity=0.003  Sum_probs=139.1

Q ss_pred             ChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhhccCchHHHHHHH
Q 036661          409 SIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL----DLRPN-RVTFLAVLQACTHAGFLEKGWGYF  483 (615)
Q Consensus       409 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~  483 (615)
                      ++++|...|++.           +..|...|++++|...|++..+.    |-.++ ..++..+..+|...|++++|+..+
T Consensus        32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~  100 (292)
T 1qqe_A           32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (292)
T ss_dssp             HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            488888876653           66788899999999999988763    31222 358889999999999999999999


Q ss_pred             HHHHHhhCCCCC----hhHHHHHHHHHHhc-CChHHHHHHHHhCC-CCC---C----hhhHHHHHHHHHHhCChhHHHHH
Q 036661          484 NLMTKVYQVNPE----LNHYSCMADLLGRK-GKLKEALDFVQSMP-IKS---D----AGIWGTLLCACKIHRNIEIGEYV  550 (615)
Q Consensus       484 ~~~~~~~~~~~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-~~p---~----~~~~~~l~~~~~~~~~~~~A~~~  550 (615)
                      ++..+-..-..+    ..++..++.+|... |++++|++.+++.. ..|   +    ..++..++..+...|++++|+..
T Consensus       101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  180 (292)
T 1qqe_A          101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI  180 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            998754321122    35788899999996 99999999999886 222   1    34678888999999999999999


Q ss_pred             HHHHhccCCCCCC-------ChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          551 AYRLFELEPHSAA-------PYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       551 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +++++++.|+++.       .|..++.+|...|++++|+..+++..+..+
T Consensus       181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  230 (292)
T 1qqe_A          181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP  230 (292)
T ss_dssp             HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            9999999998765       367889999999999999999998876443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.12  E-value=2.2e-09  Score=86.78  Aligned_cols=131  Identities=16%  Similarity=0.276  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHH
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLL  506 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  506 (615)
                      .|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++...  .+.+...+..++.++
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence            56777888888899999999999988764 345677888888888999999999999998853  234566778888999


Q ss_pred             HhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          507 GRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       507 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      ...|++++|.+.++++.  .+.+...+..++..+...|++++|...++++++.+|+
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            99999999999998876  3445667888888999999999999999999998886

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.11  E-value=2.5e-10  Score=93.68  Aligned_cols=102  Identities=11%  Similarity=0.019  Sum_probs=87.3

Q ss_pred             CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661          492 VNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEM  568 (615)
Q Consensus       492 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  568 (615)
                      +.|+ ...+..++..+.+.|++++|.+.|+++.  .+.+...|..++.++...|++++|+..|+++++++|+++.+|..+
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l  110 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT  110 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence            3443 3567778888888999999999998886  444677888999999999999999999999999999999999999


Q ss_pred             HHHHHccCChHHHHHHHHHHHhcCc
Q 036661          569 ANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       569 ~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      |.+|...|++++|++.|++..+...
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999987654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.10  E-value=1.5e-09  Score=95.40  Aligned_cols=127  Identities=7%  Similarity=-0.017  Sum_probs=98.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHh
Q 036661          430 TMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGR  508 (615)
Q Consensus       430 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~  508 (615)
                      .+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|...|+++.+.   .| +...+..++.+|..
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence            38889999999999999999999873 335678888999999999999999999999853   44 46778888888876


Q ss_pred             cCC--hHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          509 KGK--LKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       509 ~g~--~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      .|+  .+.+...+++.. ..|....+.....++...|++++|+..++++++++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            654  455677777765 2222334555666777889999999999999999997

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.10  E-value=5.5e-10  Score=115.16  Aligned_cols=160  Identities=8%  Similarity=-0.012  Sum_probs=123.1

Q ss_pred             cCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHH
Q 036661          407 CGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYF  483 (615)
Q Consensus       407 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  483 (615)
                      .|++++|.+.+++..+   .+...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4788999999998776   356789999999999999999999999999863 335678888999999999999999999


Q ss_pred             HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHh---CChhHHHHHHHHHhccC
Q 036661          484 NLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH---RNIEIGEYVAYRLFELE  558 (615)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~  558 (615)
                      ++..+.  .+.+...+..++.+|.+.|++++|.+.+++..  .+.+...+..++.++...   |++++|.+.++++++.+
T Consensus        81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            999853  23346788889999999999999999999986  334566888888999999   99999999999999999


Q ss_pred             CCCCCChHhHH
Q 036661          559 PHSAAPYVEMA  569 (615)
Q Consensus       559 p~~~~~~~~l~  569 (615)
                      |++...+..++
T Consensus       159 p~~~~~~~~l~  169 (568)
T 2vsy_A          159 VGAVEPFAFLS  169 (568)
T ss_dssp             CCCSCHHHHTT
T ss_pred             CcccChHHHhC
Confidence            99888887776

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.08  E-value=2.3e-09  Score=99.45  Aligned_cols=199  Identities=13%  Similarity=0.040  Sum_probs=121.4

Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHHhc------CC-CCchHHHHHHHHHHHhcCChHHHHHHHhcCCC----------
Q 036661          360 VTVLSMISGCGQSGALELGKWFDNYACSG------GL-KDNVMVCNALIDMYSKCGSIGDARELFYALPE----------  422 (615)
Q Consensus       360 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------  422 (615)
                      .++..+...+...|+++.|...++.+.+.      +- +....++..+...|...|++++|.+.+++...          
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  123 (283)
T 3edt_B           44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH  123 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34444445555555555555555544432      11 22334556666666667777766666665432          


Q ss_pred             -CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHhhccCchHHHHHHHHHHHHhh----
Q 036661          423 -KTVVSWTTMIAGCALNGEFVEALDLFHQMMEL------DLRPN-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVY----  490 (615)
Q Consensus       423 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----  490 (615)
                       ....++..+...+...|++++|...++++.+.      +-.|+ ..++..+..++...|++++|..+++++.+..    
T Consensus       124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~  203 (283)
T 3edt_B          124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE  203 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence             12356777888888889999999988888764      11333 3577888889999999999999999887531    


Q ss_pred             --CCCCC-hhHHHHHHHHHHhcCC------hHHHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661          491 --QVNPE-LNHYSCMADLLGRKGK------LKEALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELE  558 (615)
Q Consensus       491 --~~~~~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  558 (615)
                        ...+. ...+..+...+...+.      +.++...++... ..|+ ...+..++..+...|++++|...++++++..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence              11222 2334444444444333      344444555544 2232 3467888899999999999999999998753

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.06  E-value=4.5e-10  Score=117.77  Aligned_cols=154  Identities=10%  Similarity=-0.034  Sum_probs=134.5

Q ss_pred             HhcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 036661          436 ALNGEFVEALDLFHQMM--------ELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLG  507 (615)
Q Consensus       436 ~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  507 (615)
                      ...|++++|++.+++..        +.. +.+...+..+..++...|++++|+..|+++.+.  .+.+...+..++.+|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence            67899999999999998        432 334578888899999999999999999999863  2345678889999999


Q ss_pred             hcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHH
Q 036661          508 RKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLR  585 (615)
Q Consensus       508 ~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  585 (615)
                      ..|++++|.+.|+++. ..| +...+..++.++...|++++ ++.|+++++++|+++.+|..++.+|.+.|++++|++.+
T Consensus       479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999987 444 56688899999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHhcCc
Q 036661          586 TMMKRNQV  593 (615)
Q Consensus       586 ~~~~~~~~  593 (615)
                      +++.+..+
T Consensus       558 ~~al~l~P  565 (681)
T 2pzi_A          558 DEVPPTSR  565 (681)
T ss_dssp             HTSCTTST
T ss_pred             HhhcccCc
Confidence            88876554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.06  E-value=8.8e-10  Score=87.76  Aligned_cols=108  Identities=12%  Similarity=-0.034  Sum_probs=60.0

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACK  539 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~  539 (615)
                      .+......|.+.|++++|++.|++..+.  .+.+...|..++.+|.+.|++++|++.+++..  .+.+...|..++.++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            4445555566666666666666655532  12234455555555556666666665555554  2233445555666666


Q ss_pred             HhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661          540 IHRNIEIGEYVAYRLFELEPHSAAPYVEMANI  571 (615)
Q Consensus       540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  571 (615)
                      ..|++++|++.++++++++|+++.++..++.+
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            66666666666666666666665555555443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.05  E-value=1.3e-09  Score=95.90  Aligned_cols=162  Identities=11%  Similarity=0.059  Sum_probs=123.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHH----------------HHHHhhccCchHHHHHHHHHHHHhh
Q 036661          428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-VTFLA----------------VLQACTHAGFLEKGWGYFNLMTKVY  490 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~  490 (615)
                      +......+...|++++|+..|++..+.  .|+. ..+..                +..++...|++++|+..|++..+. 
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-   83 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-   83 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence            334455667778888888888888775  4543 45555                888999999999999999999853 


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhC--ChhHHHHHHHHHhccCCCCCCChH
Q 036661          491 QVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHR--NIEIGEYVAYRLFELEPHSAAPYV  566 (615)
Q Consensus       491 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~  566 (615)
                       .+-+...+..++.+|...|++++|.+.|+++. ..| +...+..++.++...|  +.+.+...++++....|. ...+.
T Consensus        84 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~  161 (208)
T 3urz_A           84 -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY  161 (208)
T ss_dssp             -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence             23356788999999999999999999999987 444 5678888888876654  445667777777654443 23567


Q ss_pred             hHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          567 EMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       567 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      .++.++...|++++|++.|++..+..+.
T Consensus       162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          162 RDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            7888999999999999999999887654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.03  E-value=1.1e-09  Score=87.25  Aligned_cols=102  Identities=11%  Similarity=0.059  Sum_probs=91.8

Q ss_pred             CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661          492 VNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEM  568 (615)
Q Consensus       492 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  568 (615)
                      +.|+ ...+...+..|.+.|++++|++.|++..  .+.+...|..++.++...|++++|+..++++++++|+++.+|..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            4455 3567788999999999999999999987  445677899999999999999999999999999999999999999


Q ss_pred             HHHHHccCChHHHHHHHHHHHhcCc
Q 036661          569 ANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       569 ~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      |.+|...|++++|++.|++..+..+
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            9999999999999999999988654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.00  E-value=1e-08  Score=96.29  Aligned_cols=221  Identities=10%  Similarity=0.016  Sum_probs=156.5

Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 036661          336 QKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARE  415 (615)
Q Consensus       336 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  415 (615)
                      ..|++++|.+++++..+... ..         .+...++++.|...+...               ...|...|++++|.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            35677888888887765321 11         111146677777666554               456778888888888


Q ss_pred             HHhcCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHhhccCchHHHHH
Q 036661          416 LFYALPE-----KT----VVSWTTMIAGCALNGEFVEALDLFHQMMELDL---RPN--RVTFLAVLQACTHAGFLEKGWG  481 (615)
Q Consensus       416 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~  481 (615)
                      .|.+...     .+    ..+|+.+...|...|++++|+..+++..+.-.   .|.  ..++..+..+|.. |++++|+.
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            7776543     11    34788889999999999999999998876311   222  2467788888988 99999999


Q ss_pred             HHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----hhhHHHHHHHHHHhCChhHHHH
Q 036661          482 YFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP-I---KSD----AGIWGTLLCACKIHRNIEIGEY  549 (615)
Q Consensus       482 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~~~~~~A~~  549 (615)
                      .|++......-..+    ..++..++.+|.+.|++++|++.+++.. .   .+.    ...+..++.++...|++++|..
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99998754221111    3578889999999999999999999876 1   111    1255566677778899999999


Q ss_pred             HHHHHhccCCCCCCC-----hHhHHHHHHccCChHHHHHH
Q 036661          550 VAYRLFELEPHSAAP-----YVEMANIYALGGRWDGVANL  584 (615)
Q Consensus       550 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~  584 (615)
                      .+++++ ++|+....     ...++.++ ..|+.+.+.++
T Consensus       217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            999999 99986654     33455555 56777666653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.00  E-value=4e-09  Score=93.25  Aligned_cols=130  Identities=11%  Similarity=-0.033  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHH
Q 036661          426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADL  505 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  505 (615)
                      ..+..+...+...|++++|+..+++..    .|+...+..+..++...|++++|...+++..+.  .+.+...+..++.+
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence            345667778888999999999998773    667888888999999999999999999998853  23456778888999


Q ss_pred             HHhcCChHHHHHHHHhCC-CCC-Ch----------------hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          506 LGRKGKLKEALDFVQSMP-IKS-DA----------------GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       506 ~~~~g~~~~A~~~~~~~~-~~p-~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                      |...|++++|.+.++++. ..| +.                ..+..++.++...|++++|...++++++++|++
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            999999999999998875 222 22                577788888889999999999999999999985

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.00  E-value=9.1e-09  Score=106.02  Aligned_cols=152  Identities=13%  Similarity=-0.028  Sum_probs=85.5

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 036661          439 GEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDF  518 (615)
Q Consensus       439 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  518 (615)
                      |++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+.  .+.+...+..++.+|...|++++|.+.
T Consensus         3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            56666666666666542 223456666666666667777777777666631  122345566666667777777777777


Q ss_pred             HHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc---CChHHHHHHHHHHHhcCc
Q 036661          519 VQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG---GRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       519 ~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~  593 (615)
                      +++..  .+.+...+..++.++...|++++|.+.++++++.+|+++..+..++.+|...   |++++|.+.+++..+.+.
T Consensus        80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A           80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence            66665  2333456666666666677777777777777777776666666777777766   667777777666665544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.00  E-value=6.4e-10  Score=91.53  Aligned_cols=96  Identities=8%  Similarity=-0.068  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661          497 NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL  574 (615)
Q Consensus       497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  574 (615)
                      ..+..++..+.+.|++++|...|+++.  .+.+...|..++.++...|++++|+..++++++++|+++..+..++.+|..
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            445556666666677777766666654  333455666666677777777777777777777777777777777777777


Q ss_pred             cCChHHHHHHHHHHHhcC
Q 036661          575 GGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       575 ~g~~~~A~~~~~~~~~~~  592 (615)
                      .|++++|++.+++..+..
T Consensus       102 ~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A          102 XGELAEAESGLFLAQELI  119 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHC
Confidence            777777777777666544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.98  E-value=5.7e-08  Score=89.52  Aligned_cols=191  Identities=15%  Similarity=0.159  Sum_probs=118.7

Q ss_pred             HHHHHHHHHhcC--ChHHHHHHHhcCCC---CChHHHHHHHHHH----Hhc---CChHHHHHHHHHHHHcCCCCCHHHHH
Q 036661          397 CNALIDMYSKCG--SIGDARELFYALPE---KTVVSWTTMIAGC----ALN---GEFVEALDLFHQMMELDLRPNRVTFL  464 (615)
Q Consensus       397 ~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~  464 (615)
                      ++.-..++...|  +++++++.++.+..   .+..+|+.-...+    ...   +++++++.+++++.+.. +-|..+|.
T Consensus        70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~  148 (306)
T 3dra_A           70 WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWS  148 (306)
T ss_dssp             HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            333333333344  55555555554443   2233444433333    333   56777777777777753 34556666


Q ss_pred             HHHHHhhccCchH--HHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhCC--CCCChhhHHHH
Q 036661          465 AVLQACTHAGFLE--KGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGK------LKEALDFVQSMP--IKSDAGIWGTL  534 (615)
Q Consensus       465 ~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~--~~p~~~~~~~l  534 (615)
                      .-..++.+.|.++  +++++++++.+.  -+-+...|+.-..++.+.|+      ++++++.++++.  .+-+...|..+
T Consensus       149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~  226 (306)
T 3dra_A          149 YRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYL  226 (306)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHH
Confidence            6666666666666  777777777743  23344566666666666665      677777777765  44456677777


Q ss_pred             HHHHHHhCC-hhHHHHHHHHHhccC---CCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          535 LCACKIHRN-IEIGEYVAYRLFELE---PHSAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       535 ~~~~~~~~~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ...+.+.|+ .+.+....+++++++   |.++.++..++.+|.+.|+.++|+++++++.+
T Consensus       227 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          227 LGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            777777665 344556777777665   67777788888888888888888888888765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.97  E-value=4.8e-08  Score=91.09  Aligned_cols=203  Identities=9%  Similarity=0.019  Sum_probs=139.9

Q ss_pred             HHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC
Q 036661          383 NYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVV---SWTTMIAGCALNGEFVEALDLFHQMMELDL-RP  458 (615)
Q Consensus       383 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p  458 (615)
                      ..+......|+..+...+...+.-.-     ..++..-...+..   .+...+..+...|++++|..++++..+... .|
T Consensus        35 s~~e~g~~~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~  109 (293)
T 3u3w_A           35 SRIESGAVYPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP  109 (293)
T ss_dssp             HHHHTTSCCCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHCCCCCCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCCh
Confidence            33333334566666655555443211     1223222222222   233346778889999999999999887421 22


Q ss_pred             CHH----HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-----CC
Q 036661          459 NRV----TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP-----IK  525 (615)
Q Consensus       459 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~  525 (615)
                      +..    .+..+...+...|++++|+..++++.....-.++    ..+++.++.+|...|++++|.+.++++.     .+
T Consensus       110 ~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~  189 (293)
T 3u3w_A          110 EFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH  189 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence            221    2334666777888999999999999853222223    2368889999999999999999998875     11


Q ss_pred             CC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC------CCChHhHHHHHHccCC-hHHHHHHHHHHHh
Q 036661          526 SD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS------AAPYVEMANIYALGGR-WDGVANLRTMMKR  590 (615)
Q Consensus       526 p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~  590 (615)
                      .+    ..++..++..|...|++++|+..+++++++.+..      +.+|..+|.+|.+.|+ +++|.+.+++...
T Consensus       190 ~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            12    2367788899999999999999999999876543      4678899999999995 6999999998865

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.97  E-value=9.3e-07  Score=88.29  Aligned_cols=204  Identities=8%  Similarity=-0.072  Sum_probs=130.3

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcC
Q 036661          341 DEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYAL  420 (615)
Q Consensus       341 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  420 (615)
                      +.+..+|+++... .+.+...|...+.-+...|+.+.|..+++.....  +.+...+...... ...++.  ...+.+..
T Consensus       196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~  269 (493)
T 2uy1_A          196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKY  269 (493)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHT
T ss_pred             HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHHH
Confidence            3466778877765 3455666766677777788888999999888877  4444333322211 111111  11222211


Q ss_pred             C----------C--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCchHHHHHHHHHHH
Q 036661          421 P----------E--KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH-AGFLEKGWGYFNLMT  487 (615)
Q Consensus       421 ~----------~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~  487 (615)
                      .          .  .....|...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|..+|+...
T Consensus       270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al  347 (493)
T 2uy1_A          270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL  347 (493)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred             HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            1          0  11245666777777778899999999988 321 2344444432222222 336899999999998


Q ss_pred             HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661          488 KVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFE  556 (615)
Q Consensus       488 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  556 (615)
                      +.++  .+...+...++...+.|+.+.|..+|+++.  .....|...+..-...|+.+.+..++++.++
T Consensus       348 ~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          348 LKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7542  234456667787888899999999999985  2456777777777788999999998888874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.97  E-value=6.6e-09  Score=96.40  Aligned_cols=137  Identities=11%  Similarity=-0.021  Sum_probs=114.9

Q ss_pred             CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHH
Q 036661          457 RPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLL  535 (615)
Q Consensus       457 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~  535 (615)
                      +.+...+..+...+...|++++|...|+++.+.  .+-+...+..++.++.+.|++++|...++++. ..|+........
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence            334467778888999999999999999999853  23346778889999999999999999999998 566655433333


Q ss_pred             -HHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661          536 -CACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKK  595 (615)
Q Consensus       536 -~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  595 (615)
                       ..+...++.++|...++++++.+|+++..+..++.+|...|++++|++.++++.+..+..
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence             346678889999999999999999999999999999999999999999999999876543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.95  E-value=1.9e-08  Score=93.80  Aligned_cols=164  Identities=9%  Similarity=-0.011  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhhccCchHHHHHHHHHHHHhhCC--CCC--hh
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR-----VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV--NPE--LN  497 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~  497 (615)
                      .+...+..+...|++++|.+.+++..+.....+.     ..+..+...+...|++++|+..+++..+...-  .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            4455667778889999999988888775322111     12334555677888999999999888742111  111  34


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC------C
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP----IKSD-----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS------A  562 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~  562 (615)
                      ++..++..|...|++++|...++++.    ..|+     ..++..++..|...|++++|+..+++++++.++.      +
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            78888999999999999999998764    1222     1477888889999999999999999998765431      4


Q ss_pred             CChHhHHHHHHccCChHHH-HHHHHHHHh
Q 036661          563 APYVEMANIYALGGRWDGV-ANLRTMMKR  590 (615)
Q Consensus       563 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  590 (615)
                      .+|..+|.+|...|++++| ...+++...
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            5778899999999999999 777887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.95  E-value=1.5e-08  Score=90.30  Aligned_cols=160  Identities=13%  Similarity=0.054  Sum_probs=98.2

Q ss_pred             HHHHHHhcCChHHHHHHHhcCCC--CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 036661          400 LIDMYSKCGSIGDARELFYALPE--KT----VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR----VTFLAVLQA  469 (615)
Q Consensus       400 l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~  469 (615)
                      +...+.+.|++++|...|+++..  |+    ...+..+..++...|++++|+..|+++.+.  .|+.    ..+..+..+
T Consensus        10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~g~~   87 (225)
T 2yhc_A           10 TAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMRGLT   87 (225)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHHHHH
Confidence            34444455555555555554432  11    124444555555555555555555555543  2221    122222222


Q ss_pred             hh------------------ccCchHHHHHHHHHHHHhhCCCCChh-HH-----------------HHHHHHHHhcCChH
Q 036661          470 CT------------------HAGFLEKGWGYFNLMTKVYQVNPELN-HY-----------------SCMADLLGRKGKLK  513 (615)
Q Consensus       470 ~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~-~~-----------------~~l~~~~~~~g~~~  513 (615)
                      +.                  ..|++++|...|+++.+.   .|+.. .+                 ..++..|.+.|+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~  164 (225)
T 2yhc_A           88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV  164 (225)
T ss_dssp             HHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence            22                  356677777777777643   23321 11                 34677889999999


Q ss_pred             HHHHHHHhCC-CCCCh----hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661          514 EALDFVQSMP-IKSDA----GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP  564 (615)
Q Consensus       514 ~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  564 (615)
                      +|+..|+++. ..|+.    ..+..++.++.+.|+.++|++.++++....|++...
T Consensus       165 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~  220 (225)
T 2yhc_A          165 AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH  220 (225)
T ss_dssp             HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred             HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence            9999999986 44442    467888899999999999999999999999987554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.91  E-value=3.2e-09  Score=90.75  Aligned_cols=125  Identities=7%  Similarity=0.045  Sum_probs=78.3

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHH-HHhcCCh--
Q 036661          436 ALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADL-LGRKGKL--  512 (615)
Q Consensus       436 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--  512 (615)
                      ...|++++|+..+++..+.. +.+...+..+...|...|++++|...|+++.+..  +.+...+..++.+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence            34566777777777776653 3345667777777777777777777777776431  2344556666666 5667776  


Q ss_pred             HHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661          513 KEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA  563 (615)
Q Consensus       513 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  563 (615)
                      ++|...++++. ..| +...+..++..+...|++++|...++++++.+|+++.
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            77777777665 223 3456666667777777777777777777777776544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.91  E-value=1.1e-08  Score=86.09  Aligned_cols=127  Identities=7%  Similarity=-0.066  Sum_probs=96.2

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACK  539 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~  539 (615)
                      .+..+...+...|++++|...+++..+.  .+.+...+..++.++...|++++|.+.+++..  .+.+...+..++.++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4555666677777777777777777642  23345667777777788888888888877765  3345667888888889


Q ss_pred             HhCChhHHHHHHHHHhccCCCCCCChHhHHH--HHHccCChHHHHHHHHHHHh
Q 036661          540 IHRNIEIGEYVAYRLFELEPHSAAPYVEMAN--IYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ..|++++|...++++++.+|+++..+..++.  .+...|++++|++.+++..+
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            9999999999999999999998887755444  48888999999999887754

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.91  E-value=1.8e-08  Score=85.76  Aligned_cols=155  Identities=10%  Similarity=-0.021  Sum_probs=117.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhc
Q 036661          397 CNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQA-CTH  472 (615)
Q Consensus       397 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~  472 (615)
                      +..+...+...|++++|...+++...   .+...+..+..++...|++++|+..++++...  .|+......+... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence            44566778889999999999998886   46678888999999999999999999998775  3444433322211 222


Q ss_pred             cCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---hhhHHHHHHHHHHhCChhHH
Q 036661          473 AGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD---AGIWGTLLCACKIHRNIEIG  547 (615)
Q Consensus       473 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~~~~~~A  547 (615)
                      .+...+|...+++..+.   .| +...+..++.++...|++++|...++++. ..|+   ...+..++..+...|+.++|
T Consensus        87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            22334578888888743   44 46788889999999999999999998876 4554   44788888999999999999


Q ss_pred             HHHHHHHhc
Q 036661          548 EYVAYRLFE  556 (615)
Q Consensus       548 ~~~~~~~~~  556 (615)
                      ...|++++.
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.90  E-value=3.7e-08  Score=86.92  Aligned_cols=152  Identities=13%  Similarity=0.036  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 036661          396 VCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGF  475 (615)
Q Consensus       396 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~  475 (615)
                      .+..+...+...|++++|.+.|++...++...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|+
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence            455677788899999999999999988888999999999999999999999999999874 4456788889999999999


Q ss_pred             hHHHHHHHHHHHHhhCCCC--------------ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHH
Q 036661          476 LEKGWGYFNLMTKVYQVNP--------------ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKI  540 (615)
Q Consensus       476 ~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~  540 (615)
                      +++|...|+++.+...-.+              ....+..++.+|.+.|++++|.+.++++. ..|+.           .
T Consensus        87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----------~  155 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------R  155 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------G
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc-----------c
Confidence            9999999999986321111              12678889999999999999999999876 56654           2


Q ss_pred             hCChhHHHHHHHHHhccCC
Q 036661          541 HRNIEIGEYVAYRLFELEP  559 (615)
Q Consensus       541 ~~~~~~A~~~~~~~~~~~p  559 (615)
                      .+..+.|...+++.....|
T Consensus       156 ~~~~~~a~~~~~~~~~~~~  174 (213)
T 1hh8_A          156 HSKIDKAMECVWKQKLYEP  174 (213)
T ss_dssp             GGHHHHHHHHHHTTCCCCC
T ss_pred             cchHHHHHHHHHhcccccc
Confidence            3455666666655444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.89  E-value=7.8e-09  Score=84.47  Aligned_cols=95  Identities=13%  Similarity=-0.084  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG  575 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  575 (615)
                      .+..++..+.+.|++++|...|+++.  .+.+...|..++.++...|++++|+..++++++++|+++..+..++.+|...
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            34445555555666666666665554  2234445555666666666666666666666666666666666666666666


Q ss_pred             CChHHHHHHHHHHHhcC
Q 036661          576 GRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       576 g~~~~A~~~~~~~~~~~  592 (615)
                      |++++|++.+++..+..
T Consensus       100 g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A          100 GDLDGAESGFYSARALA  116 (142)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            66666666666665543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.89  E-value=5e-09  Score=99.58  Aligned_cols=95  Identities=13%  Similarity=-0.033  Sum_probs=82.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ...+..++.+|.+.|++++|+..++++.  .+.+...+..++.++...|++++|+..++++++++|+++.++..++.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            3567788888999999999999998886  44466788889999999999999999999999999999999999999999


Q ss_pred             ccCChHHH-HHHHHHHHh
Q 036661          574 LGGRWDGV-ANLRTMMKR  590 (615)
Q Consensus       574 ~~g~~~~A-~~~~~~~~~  590 (615)
                      ..|++++| .+.+++|.+
T Consensus       276 ~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          276 RIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            99999999 456666643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.87  E-value=7.2e-09  Score=82.68  Aligned_cols=96  Identities=10%  Similarity=0.013  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661          497 NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL  574 (615)
Q Consensus       497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  574 (615)
                      ..+..++..+.+.|++++|++.|++..  .+.+...+..++.++...|++++|+..++++++++|+++.+|..++.+|..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            345556666777777777777776665  333456677777777777777777777777777777777777777777777


Q ss_pred             cCChHHHHHHHHHHHhcC
Q 036661          575 GGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       575 ~g~~~~A~~~~~~~~~~~  592 (615)
                      .|++++|++.+++..+..
T Consensus        85 ~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           85 VKEYASALETLDAARTKD  102 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhC
Confidence            777777777777776644

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.86  E-value=1.6e-08  Score=81.47  Aligned_cols=115  Identities=10%  Similarity=-0.024  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC  538 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~  538 (615)
                      ..+..+...+...|++++|...+++..+.  .+.+...+..++.++...|++++|.+.++++.  .+.+...+..++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            45555666666666666666666666531  12244556666666666666666666666654  233456777777888


Q ss_pred             HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCC
Q 036661          539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGR  577 (615)
Q Consensus       539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  577 (615)
                      ...|++++|+..++++++.+|+++..+..++.++...|+
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            888888888888888888888888888888888877664

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.86  E-value=4.2e-09  Score=97.34  Aligned_cols=192  Identities=12%  Similarity=-0.041  Sum_probs=131.8

Q ss_pred             chHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036661          393 NVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQA  469 (615)
Q Consensus       393 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  469 (615)
                      +...+..+...+.+.|++++|...|++...   .+...|..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            345566777788888888888888887654   366788888888999999999999999888763 3345678888889


Q ss_pred             hhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHH
Q 036661          470 CTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGE  548 (615)
Q Consensus       470 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~  548 (615)
                      +...|++++|...|+++.+..   |+. ..+...+....+..+...... .......++......+.. + ..|+.++|+
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~  155 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAEREREL  155 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHH
Confidence            999999999999998887432   221 011111222222211111111 222233334434333333 2 368999999


Q ss_pred             HHHHHHhccCCCCCCChHhHHHHHHcc-CChHHHHHHHHHHHhc
Q 036661          549 YVAYRLFELEPHSAAPYVEMANIYALG-GRWDGVANLRTMMKRN  591 (615)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~  591 (615)
                      +.++++++.+|++......+..++.+. +.+++|.++|.++.+.
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999999999887778888888777 7799999999988764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.85  E-value=1.7e-08  Score=80.88  Aligned_cols=117  Identities=8%  Similarity=-0.042  Sum_probs=89.9

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC  538 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~  538 (615)
                      ..+..+...+...|++++|...++++...  .+.+...+..++.++...|++++|.+.+++..  .+.+...+..++..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            45666666777777777777777777643  23345667777777778888888888877765  333466778888888


Q ss_pred             HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChH
Q 036661          539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWD  579 (615)
Q Consensus       539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  579 (615)
                      ...|++++|...++++++.+|+++..+..++.++...|+++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            89999999999999999999998899999999998888763

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.85  E-value=5.1e-09  Score=82.62  Aligned_cols=96  Identities=10%  Similarity=-0.070  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG  575 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  575 (615)
                      .+..++..+.+.|++++|...++++.  .+.+...|..++.++...|++++|+..++++++++|+++.++..++.+|...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            45567788899999999999999887  3446778888999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCc
Q 036661          576 GRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       576 g~~~~A~~~~~~~~~~~~  593 (615)
                      |++++|++.++++.+..+
T Consensus        99 g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQP  116 (121)
T ss_dssp             HHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHhCc
Confidence            999999999999887554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.85  E-value=1.2e-08  Score=79.25  Aligned_cols=100  Identities=11%  Similarity=0.007  Sum_probs=85.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC--CCCChHhHHH
Q 036661          495 ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH--SAAPYVEMAN  570 (615)
Q Consensus       495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~  570 (615)
                      +...+..++..+.+.|++++|...++++.  .+.+...+..++..+...|++++|...++++++.+|+  ++.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            34566678888888888888888888876  3445667888889999999999999999999999999  9999999999


Q ss_pred             HHHcc-CChHHHHHHHHHHHhcCcc
Q 036661          571 IYALG-GRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       571 ~~~~~-g~~~~A~~~~~~~~~~~~~  594 (615)
                      +|... |++++|.+.+++..+..+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccC
Confidence            99999 9999999999999877654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.83  E-value=2.5e-08  Score=79.12  Aligned_cols=115  Identities=15%  Similarity=0.198  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHH
Q 036661          460 RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA  537 (615)
Q Consensus       460 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~  537 (615)
                      ...+..+...+...|++++|.+.++++.+.  .+.+...+..++.++.+.|++++|..+++++.  .+.+...+..++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            345666666777777777777777777643  12345566677777777777777777777765  33455677778888


Q ss_pred             HHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC
Q 036661          538 CKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG  576 (615)
Q Consensus       538 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  576 (615)
                      +...|++++|...++++++.+|+++..+..++.++...|
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            888889999999999999888988888888888876554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.83  E-value=2.8e-08  Score=93.26  Aligned_cols=197  Identities=8%  Similarity=-0.042  Sum_probs=151.1

Q ss_pred             ccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 036661          371 QSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQ  450 (615)
Q Consensus       371 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  450 (615)
                      ..|++++|.+++++..+... .+         .+...++++.|...|.+           ....|...|++++|...+.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~   61 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ   61 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence            46788899999888776321 11         01115788888887654           46778899999999999998


Q ss_pred             HHHcCC---CC-C-HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 036661          451 MMELDL---RP-N-RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQS  521 (615)
Q Consensus       451 ~~~~~~---~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~  521 (615)
                      ..+...   .+ . ..++..+..+|...|++++|+..|++...-+.-..+    ..++..++.+|.. |++++|++.+++
T Consensus        62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~  140 (307)
T 2ifu_A           62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            876311   11 1 247888889999999999999999998754221111    3577889999988 999999999998


Q ss_pred             CC-CCC---C----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC------ChHhHHHHHHccCChHHHHHHHHH
Q 036661          522 MP-IKS---D----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA------PYVEMANIYALGGRWDGVANLRTM  587 (615)
Q Consensus       522 ~~-~~p---~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~  587 (615)
                      .. ..|   +    ..++..++..+...|++++|+..+++++++.|++..      .+..++.++...|++++|+..+++
T Consensus       141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            75 111   1    346778889999999999999999999998776543      677788899999999999999999


Q ss_pred             HH
Q 036661          588 MK  589 (615)
Q Consensus       588 ~~  589 (615)
                      ..
T Consensus       221 al  222 (307)
T 2ifu_A          221 SY  222 (307)
T ss_dssp             HT
T ss_pred             Hh
Confidence            88

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.82  E-value=4.3e-08  Score=80.28  Aligned_cols=105  Identities=9%  Similarity=-0.065  Sum_probs=88.3

Q ss_pred             CCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHH
Q 036661          456 LRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWG  532 (615)
Q Consensus       456 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~  532 (615)
                      +.|+. ..+..+...+.+.|++++|...|+++...  -+.+...|..++.+|...|++++|++.|+++.  .+.++..+.
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            35554 46777888999999999999999999853  23356788889999999999999999999987  344567889


Q ss_pred             HHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661          533 TLLCACKIHRNIEIGEYVAYRLFELEPHSA  562 (615)
Q Consensus       533 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  562 (615)
                      .++.++...|++++|+..+++++++.|+++
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999853

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.82  E-value=1.1e-08  Score=81.61  Aligned_cols=95  Identities=5%  Similarity=-0.060  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC-------ChHhH
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA-------PYVEM  568 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~l  568 (615)
                      .+..++..+.+.|++++|++.|+++.  .+.+...+..++.++...|++++|+..++++++++|+++.       +|..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            45567777777777777777777765  3334567777788888888888888888888888877654       45667


Q ss_pred             HHHHHccCChHHHHHHHHHHHhcC
Q 036661          569 ANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       569 ~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      |.+|...|++++|++.|++.++..
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC
Confidence            777788888888888888877644

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.82  E-value=1.5e-06  Score=80.10  Aligned_cols=226  Identities=8%  Similarity=-0.044  Sum_probs=158.4

Q ss_pred             hhHHHHHHHHHHHCCCCCCHH-HHHHHHHhhcccc--hhhHHHHHHHHHHhcCCCCchHHHHHHHHHH----Hhc---CC
Q 036661          340 LDEALRLFFAMEAAGEVPDLV-TVLSMISGCGQSG--ALELGKWFDNYACSGGLKDNVMVCNALIDMY----SKC---GS  409 (615)
Q Consensus       340 ~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~  409 (615)
                      .++|+.+++.++..  .|+.. .++.--..+...+  +++++...++.+...+ +-+..+++.-...+    ...   ++
T Consensus        49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence            35677777666664  23332 3333333344444  6777777777766654 33333443333333    333   67


Q ss_pred             hHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc------hHH
Q 036661          410 IGDARELFYALPE---KTVVSWTTMIAGCALNGEFV--EALDLFHQMMELDLRPNRVTFLAVLQACTHAGF------LEK  478 (615)
Q Consensus       410 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~~  478 (615)
                      +++++++++.+.+   .|..+|+--..++.+.+.++  +++++++++++.+ .-|...|+.-...+...+.      +++
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence            8888888887765   46678888777888888888  9999999999975 4466777777776777666      889


Q ss_pred             HHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhCC-C----CCChhhHHHHHHHHHHhCChhHHHHHHH
Q 036661          479 GWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE-ALDFVQSMP-I----KSDAGIWGTLLCACKIHRNIEIGEYVAY  552 (615)
Q Consensus       479 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~p~~~~~~~l~~~~~~~~~~~~A~~~~~  552 (615)
                      +++.++++...  .+-+...|+.+..++.+.|+..+ +.++.+++. .    ..+...+..++..+.+.|+.++|+++++
T Consensus       205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            99999998853  34456788888888988888655 556777765 2    3356788888899999999999999999


Q ss_pred             HHhc-cCCCCCCChHhHHHH
Q 036661          553 RLFE-LEPHSAAPYVEMANI  571 (615)
Q Consensus       553 ~~~~-~~p~~~~~~~~l~~~  571 (615)
                      .+.+ .+|-....|...+..
T Consensus       283 ~l~~~~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          283 LLKSKYNPIRSNFWDYQISK  302 (306)
T ss_dssp             HHHHTTCGGGHHHHHHHHHT
T ss_pred             HHHhccChHHHHHHHHHHhh
Confidence            9996 899877777766543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.81  E-value=6.1e-09  Score=85.62  Aligned_cols=116  Identities=8%  Similarity=-0.024  Sum_probs=89.5

Q ss_pred             HHHHHHcCCCCCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 036661          448 FHQMMELDLRPNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--I  524 (615)
Q Consensus       448 ~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~  524 (615)
                      ++++.+.  .|+. ..+..+...+...|++++|...|+++...  -+.+...|..++.+|...|++++|++.|+++.  .
T Consensus        10 ~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A           10 IAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             HHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            4444443  4543 46677777888889999999999888753  23356677888888999999999999998876  3


Q ss_pred             CCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh
Q 036661          525 KSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE  567 (615)
Q Consensus       525 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  567 (615)
                      +.+...+..++.++...|++++|+..++++++++|+++.....
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  128 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL  128 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence            3456688888899999999999999999999999987766443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.80  E-value=2.7e-07  Score=81.06  Aligned_cols=172  Identities=6%  Similarity=-0.080  Sum_probs=126.0

Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC-CChHHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 036661          378 GKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE-KTVVSWTTMIAGCALNG----EFVEALDLFHQMM  452 (615)
Q Consensus       378 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~  452 (615)
                      |.+.|+...+.|   ++..+..+...|...+++++|.+.|++..+ .++..+..|...|.. +    ++++|++.|++..
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            445555555543   455666677777777788888877776554 456677777777776 5    8889999999887


Q ss_pred             HcCCCCCHHHHHHHHHHhhc----cCchHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHHh
Q 036661          453 ELDLRPNRVTFLAVLQACTH----AGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGR----KGKLKEALDFVQS  521 (615)
Q Consensus       453 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~  521 (615)
                      +.|   +...+..|...|..    .+++++|..+|++..+   ..|+   ...+..|..+|..    .+++++|+.+|++
T Consensus        81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            754   55667777777776    7889999999998874   3443   6677788888888    7889999999988


Q ss_pred             CC-CCCChhhHHHHHHHHHHh-C-----ChhHHHHHHHHHhccCC
Q 036661          522 MP-IKSDAGIWGTLLCACKIH-R-----NIEIGEYVAYRLFELEP  559 (615)
Q Consensus       522 ~~-~~p~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p  559 (615)
                      .. ...+......+...|... |     +.++|...++++.+..+
T Consensus       155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            86 334556677777777653 3     89999999999987754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.79  E-value=1.5e-08  Score=85.13  Aligned_cols=111  Identities=10%  Similarity=-0.044  Sum_probs=92.8

Q ss_pred             CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHH
Q 036661          459 NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLC  536 (615)
Q Consensus       459 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~  536 (615)
                      +...+..+...+...|++++|+..|++..+.  .+.+...+..++.+|.+.|++++|+..+++..  .+.+...+..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3457888888999999999999999999853  23356788889999999999999999999987  3445678888999


Q ss_pred             HHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661          537 ACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI  571 (615)
Q Consensus       537 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  571 (615)
                      ++...|++++|+..++++++++|+++..|...+..
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            99999999999999999999999998866655543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.79  E-value=4.2e-08  Score=88.11  Aligned_cols=125  Identities=11%  Similarity=-0.066  Sum_probs=61.2

Q ss_pred             HHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCh----hhHHHHHHHHHHh
Q 036661          466 VLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDA----GIWGTLLCACKIH  541 (615)
Q Consensus       466 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~  541 (615)
                      +...+...|++++|.++|+.+..   ..|+......+...+.+.|++++|+..|+.....|+.    ..+..+..++...
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L  184 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL  184 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence            34445555555555555555442   1232223334444555555555555555544422211    2344455555555


Q ss_pred             CChhHHHHHHHHHhccC--CC-CCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          542 RNIEIGEYVAYRLFELE--PH-SAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       542 ~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      |++++|+..|+++..-.  |. .+..+..++.++.+.|+.++|...|+++....+
T Consensus       185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P  239 (282)
T 4f3v_A          185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP  239 (282)
T ss_dssp             TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            55555555555555322  22 223445555555555555555555555555443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.77  E-value=3.4e-08  Score=80.03  Aligned_cols=97  Identities=11%  Similarity=-0.115  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ...+..++..+...|++++|...|++..  .+.+...+..++.++...|++++|+..++++++++|+++.++..++.+|.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            4445555555555555555555555544  22234455556666666666666666666666666666666666666666


Q ss_pred             ccCChHHHHHHHHHHHhcC
Q 036661          574 LGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       574 ~~g~~~~A~~~~~~~~~~~  592 (615)
                      ..|++++|++.++++.+..
T Consensus        89 ~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           89 EMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHC
Confidence            6666666666666665543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.74  E-value=7.3e-08  Score=82.14  Aligned_cols=124  Identities=6%  Similarity=0.011  Sum_probs=99.7

Q ss_pred             hhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHH-HHHhCCh--
Q 036661          470 CTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCA-CKIHRNI--  544 (615)
Q Consensus       470 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~-~~~~~~~--  544 (615)
                      +...|++++|...+++..+.  .+.+...+..++.+|...|++++|...++++.  .+.+...+..++.+ +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            45678899999999988753  23456788889999999999999999999886  33456677778888 7788998  


Q ss_pred             hHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661          545 EIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKK  595 (615)
Q Consensus       545 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  595 (615)
                      ++|+..++++++.+|+++..+..++.+|...|++++|.+.++++.+..+..
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999999999999998876543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.73  E-value=4.6e-08  Score=85.16  Aligned_cols=97  Identities=11%  Similarity=-0.062  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661          497 NHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL  574 (615)
Q Consensus       497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  574 (615)
                      ..+..++.+|.+.|++++|+..++++.  .+.+...+..++.++...|++++|+..++++++++|+++.++..++.++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            566778888888899999988888876  344567888899999999999999999999999999999999999999999


Q ss_pred             cCChHHHH-HHHHHHHhcCc
Q 036661          575 GGRWDGVA-NLRTMMKRNQV  593 (615)
Q Consensus       575 ~g~~~~A~-~~~~~~~~~~~  593 (615)
                      .|+.+++. ..++.+...+.
T Consensus       169 ~~~~~~~~~~~~~~~f~~~~  188 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMFDKGP  188 (198)
T ss_dssp             HHHHHC--------------
T ss_pred             HHHHHHHHHHHHHHHhcccc
Confidence            99988888 66666655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.73  E-value=4.1e-07  Score=84.72  Aligned_cols=162  Identities=12%  Similarity=-0.002  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhcCCC---CCh------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 036661          396 VCNALIDMYSKCGSIGDARELFYALPE---KTV------VSWTTMIAGCALNGEFVEALDLFHQMMELDL---RPN--RV  461 (615)
Q Consensus       396 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~  461 (615)
                      .+...+..+...|++++|.+.+++..+   ...      ..+..+...+...|++++|+..+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            444566778888999999888864332   111      2344466667788899999999999886321   222  34


Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-------Ch
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-----LNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-------DA  528 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------~~  528 (615)
                      +++.+...|...|++++|..+++++.+.....|+     ..++..++.+|.+.|++++|.+.+++.. ..+       -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7888899999999999999999998743222232     2578889999999999999999998875 111       14


Q ss_pred             hhHHHHHHHHHHhCChhHH-HHHHHHHhcc
Q 036661          529 GIWGTLLCACKIHRNIEIG-EYVAYRLFEL  557 (615)
Q Consensus       529 ~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~  557 (615)
                      .++..++.++...|++++| ...+++++.+
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            5778888999999999999 8889988753

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.73  E-value=8.6e-07  Score=88.54  Aligned_cols=375  Identities=8%  Similarity=-0.088  Sum_probs=225.4

Q ss_pred             hcC-ChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCC-hhhHHH
Q 036661          167 HAK-HLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDK-FDDSLN  244 (615)
Q Consensus       167 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~  244 (615)
                      +.| +++.|..+++.+++.-  |.              |+++.+..+|++.....|+...|...+....+.+. .+....
T Consensus         6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~   69 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE   69 (493)
T ss_dssp             ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred             HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence            345 4778888888777642  22              89999999999998888999999999887776653 456777


Q ss_pred             HHHHHHHC-CCCC-CHHhHHHHHHhccC----chhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036661          245 FYRHMIYD-GFRP-DVTTVVSLLSSCVC----PEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDG  318 (615)
Q Consensus       245 ~~~~m~~~-~~~p-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  318 (615)
                      +|+..+.. |..| +...|...+..+..    .++.+.+..+|+..+......-...+...... .+......+.+++..
T Consensus        70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~  148 (493)
T 2uy1_A           70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGD  148 (493)
T ss_dssp             HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHH
Confidence            78877654 4333 55667777665542    46788899999998873211111122211111 111122223222221


Q ss_pred             cCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhccc----c---hhhHHHHHHHHHHhcCCC
Q 036661          319 MCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQS----G---ALELGKWFDNYACSGGLK  391 (615)
Q Consensus       319 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~---~~~~a~~~~~~~~~~~~~  391 (615)
                                     ..  +.+..|..+++++...-...+...|...+.--...    .   ..+.+..+++.+.... +
T Consensus       149 ---------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p  210 (493)
T 2uy1_A          149 ---------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-Y  210 (493)
T ss_dssp             ---------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-T
T ss_pred             ---------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-C
Confidence                           11  12334444444443210011233444433332111    1   1355677888887754 5


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHhcCCC-C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCCC-
Q 036661          392 DNVMVCNALIDMYSKCGSIGDARELFYALPE-K-TVVSWTTMIAGCALNGEFVEALDLFHQMMELD---------LRPN-  459 (615)
Q Consensus       392 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~p~-  459 (615)
                      .+..++...+..+.+.|+.+.|..++++... | +...|.    .|....+.++.   ++.+.+.-         ..+. 
T Consensus       211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~  283 (493)
T 2uy1_A          211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSK  283 (493)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhccc
Confidence            5678888888888999999999999986544 2 222222    22222222222   33333210         0111 


Q ss_pred             --HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCC--CCCChhhHHHH
Q 036661          460 --RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG-KLKEALDFVQSMP--IKSDAGIWGTL  534 (615)
Q Consensus       460 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~--~~p~~~~~~~l  534 (615)
                        ...|...+....+.+..+.|..+|+++ +.  ...+..+|...+..-.+.| +.+.|..+|+...  .+.++..|...
T Consensus       284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~y  360 (493)
T 2uy1_A          284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEF  360 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHH
Confidence              235666666666778899999999998 32  1234455554444444444 6999999998876  32234566667


Q ss_pred             HHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          535 LCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       535 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      +......|+.+.|..+++++.    .+...|...+..-...|+.+.+.+++++..+
T Consensus       361 id~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          361 FLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            777778999999999999983    3456777888878888999999999888875

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.73  E-value=5.8e-08  Score=76.07  Aligned_cols=109  Identities=10%  Similarity=0.013  Sum_probs=54.1

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC  538 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~  538 (615)
                      ..+..+...+...|++++|...+++....  .+.+...+..++.++...|++++|...+++..  .+.+...+..++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34444555555555555555555555532  12233444455555555555555555555543  222334444455555


Q ss_pred             HHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661          539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI  571 (615)
Q Consensus       539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  571 (615)
                      ...|++++|...++++++.+|+++..+..++.+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            555555555555555555555554444444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.72  E-value=1.5e-06  Score=80.82  Aligned_cols=159  Identities=11%  Similarity=-0.027  Sum_probs=120.4

Q ss_pred             HHHHHHHhcCChHHHHHHHhcCCCC---Ch------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 036661          399 ALIDMYSKCGSIGDARELFYALPEK---TV------VSWTTMIAGCALNGEFVEALDLFHQMMELDLR-PN----RVTFL  464 (615)
Q Consensus       399 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~  464 (615)
                      ..+..+...|++++|.+.+++....   +.      ..+..+...+...+++++|+..+++..+.... ++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            3466788899999999999876541   11      13334666777788999999999999984322 22    23688


Q ss_pred             HHHHHhhccCchHHHHHHHHHHHHhhCCC----CC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC-hhhH
Q 036661          465 AVLQACTHAGFLEKGWGYFNLMTKVYQVN----PE-LNHYSCMADLLGRKGKLKEALDFVQSMP-------IKSD-AGIW  531 (615)
Q Consensus       465 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~  531 (615)
                      .+..+|...|++++|..+++++.+...-.    +. ..++..++.+|.+.|++++|.+.+++..       ..+. ..++
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            89999999999999999999988532211    11 2477889999999999999999998875       1112 4578


Q ss_pred             HHHHHHHHHhCC-hhHHHHHHHHHhcc
Q 036661          532 GTLLCACKIHRN-IEIGEYVAYRLFEL  557 (615)
Q Consensus       532 ~~l~~~~~~~~~-~~~A~~~~~~~~~~  557 (615)
                      ..++.++...|+ +++|...+++++++
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            888899999995 69999999999864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.72  E-value=2.1e-08  Score=81.81  Aligned_cols=109  Identities=11%  Similarity=-0.048  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC  538 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~  538 (615)
                      ..+..+...+...|++++|...|+++...  -+.+...|..++.+|.+.|++++|+..|+++.  .+.+...+..++.++
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            35556667777888888888888887743  23345667778888888888888888888876  333556778888889


Q ss_pred             HHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661          539 KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI  571 (615)
Q Consensus       539 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  571 (615)
                      ...|++++|+..++++++++|+++........+
T Consensus        97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence            999999999999999999999887765554433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.71  E-value=3e-07  Score=80.29  Aligned_cols=129  Identities=5%  Similarity=-0.049  Sum_probs=58.1

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhC---CCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCC-C----h
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQ---VNP-ELNHYSCMADLLGRKGKLKEALDFVQSMP----IKS-D----A  528 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~----~  528 (615)
                      .+..+...+...|++++|...+++......   ..| ....+..++.++...|++++|.+.+++..    ..+ +    .
T Consensus        28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  107 (203)
T 3gw4_A           28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS  107 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence            444444444444444444444444432111   011 12234444444555555555544444432    011 1    1


Q ss_pred             hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC------CCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          529 GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS------AAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ..+..+...+...|++++|...+++++++.+..      ..++..++.+|...|++++|.+.+++..+
T Consensus       108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            233444455555555555555555555432211      11234556666666666666666655543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.71  E-value=1.5e-07  Score=73.72  Aligned_cols=98  Identities=10%  Similarity=0.082  Sum_probs=80.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ...+..++..+...|++++|...+++..  .+.+...+..++..+...|++++|...++++++.+|+++..+..++.+|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4456677888888888888888888876  33456677788888888888888888888888888888888888888888


Q ss_pred             ccCChHHHHHHHHHHHhcCc
Q 036661          574 LGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       574 ~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ..|++++|.+.+++..+..+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCT
T ss_pred             HHhhHHHHHHHHHHHHHcCC
Confidence            88888888888888877654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.70  E-value=9.6e-08  Score=85.76  Aligned_cols=136  Identities=10%  Similarity=-0.065  Sum_probs=83.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC--hhHHHHHHHHH
Q 036661          429 TTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE--LNHYSCMADLL  506 (615)
Q Consensus       429 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~  506 (615)
                      -.+...+...|++++|.+.|+.+...  .|+......+...+.+.+++++|+..|+...+. . .|.  ...+..+..++
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence            33445556666666666666666553  344334444445666777777777777644321 0 111  23455667777


Q ss_pred             HhcCChHHHHHHHHhCCCC---CC--hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661          507 GRKGKLKEALDFVQSMPIK---SD--AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA  569 (615)
Q Consensus       507 ~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  569 (615)
                      .+.|++++|++.|++....   |.  ...+..+..++.+.|+.++|...|++++..+|+ +.++..|.
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            7777777777777776411   32  235566777777888888888888888888887 55555543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.70  E-value=6.1e-08  Score=77.92  Aligned_cols=100  Identities=10%  Similarity=0.018  Sum_probs=89.8

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHH
Q 036661          494 PELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANI  571 (615)
Q Consensus       494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  571 (615)
                      .+...+..++..+.+.|++++|.+.+++.. ..| +...+..++..+...|++++|+..++++++.+|+++.++..++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            345678889999999999999999999976 344 667888899999999999999999999999999999999999999


Q ss_pred             HHccCChHHHHHHHHHHHhcCc
Q 036661          572 YALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       572 ~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      |...|++++|.+.+++..+...
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p  115 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDS  115 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCG
T ss_pred             HHHHhhHHHHHHHHHHHHHhCC
Confidence            9999999999999999987654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.67  E-value=4.1e-08  Score=79.30  Aligned_cols=62  Identities=11%  Similarity=-0.096  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhcc-------CCCCCCCh----HhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFEL-------EPHSAAPY----VEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      .|..+..++...|++++|+..+++++++       +|+++..|    +.+|.+|...|++++|++.|++..+.
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            6666777777777777777777777777       77777777    77788888888888888877777653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=2.4e-07  Score=76.04  Aligned_cols=111  Identities=10%  Similarity=-0.086  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHH
Q 036661          460 RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGT  533 (615)
Q Consensus       460 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~  533 (615)
                      ...+..+...+...|++++|...|++..   ...|+    ...+..++.+|...|++++|.+.+++..  .+.+...+..
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            3445555555566666666666666555   22343    3455556666666666666666666554  2224456666


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          534 LLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       534 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ++.++...|++++|...++++++++|+++..+..+..+..
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            6777777777777777777777777777666666655543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.67  E-value=9.8e-08  Score=75.97  Aligned_cols=111  Identities=8%  Similarity=-0.153  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCAC  538 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~  538 (615)
                      ..+..+...+.+.|++++|+..|++..+.  .+.+...+..++.+|.+.|++++|+..+++..  .+.+...+..++.++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34555666677777777777777777642  22345667777777777777777777777765  333456777888888


Q ss_pred             HHhCChhHHHHHHHHHhccC------CCCCCChHhHHHHHH
Q 036661          539 KIHRNIEIGEYVAYRLFELE------PHSAAPYVEMANIYA  573 (615)
Q Consensus       539 ~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~  573 (615)
                      ...|++++|+..++++++++      |+++.++..+..+..
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            88888899999999888888      777666666665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.66  E-value=1.7e-07  Score=78.66  Aligned_cols=95  Identities=17%  Similarity=0.069  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHH
Q 036661          426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADL  505 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  505 (615)
                      ..|..+...+...|++++|+..|++.++.. +.+...+..+..+|...|++++|+..++++.+.  .+.+...+..++.+
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~   88 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            445555555666666666666666665542 223445555555666666666666666665532  12224455555666


Q ss_pred             HHhcCChHHHHHHHHhCC
Q 036661          506 LGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       506 ~~~~g~~~~A~~~~~~~~  523 (615)
                      |...|++++|.+.|++..
T Consensus        89 ~~~~g~~~~A~~~~~~al  106 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGI  106 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHH
Confidence            666666666666665554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.65  E-value=1.8e-07  Score=92.92  Aligned_cols=96  Identities=9%  Similarity=0.017  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ...|..++.+|.+.|++++|+..++++.  .+.+...+..++.++...|++++|+..++++++++|+++.++..++.++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3567788899999999999999998887  44456788899999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHH-HHHHHHhc
Q 036661          574 LGGRWDGVAN-LRTMMKRN  591 (615)
Q Consensus       574 ~~g~~~~A~~-~~~~~~~~  591 (615)
                      +.|++++|.+ .+++|.++
T Consensus       397 ~~~~~~~a~~~~~~~~f~k  415 (457)
T 1kt0_A          397 KAKEHNERDRRIYANMFKK  415 (457)
T ss_dssp             HHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            9999998874 45555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.65  E-value=1.1e-07  Score=75.39  Aligned_cols=98  Identities=16%  Similarity=0.233  Sum_probs=88.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ...+..++..+...|++++|.+.++++.  .+.+...+..++..+...|++++|...++++++..|+++..+..++.+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            4677888999999999999999999986  44456788889999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHHhcCc
Q 036661          574 LGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       574 ~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ..|++++|.+.++++.+..+
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~  108 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDP  108 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCT
T ss_pred             HhcCHHHHHHHHHHHHHhCC
Confidence            99999999999999987654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.64  E-value=7.4e-08  Score=77.03  Aligned_cols=90  Identities=14%  Similarity=0.046  Sum_probs=44.3

Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-CCCCh----hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC---CCChHhHHHHHH
Q 036661          502 MADLLGRKGKLKEALDFVQSMP-IKSDA----GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS---AAPYVEMANIYA  573 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~  573 (615)
                      ++..+...|++++|.+.|+++. ..|+.    ..+..++.++...|++++|+..++++++..|++   +.++..++.+|.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            3344444455555555544443 12221    244444455555555555555555555555555   344555555555


Q ss_pred             ccCChHHHHHHHHHHHhc
Q 036661          574 LGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       574 ~~g~~~~A~~~~~~~~~~  591 (615)
                      ..|++++|.+.++++.+.
T Consensus        88 ~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            555555555555555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=1.4e-07  Score=77.52  Aligned_cols=99  Identities=11%  Similarity=-0.013  Sum_probs=89.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661          495 ELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA  569 (615)
Q Consensus       495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  569 (615)
                      +...+..++..+...|++++|.+.|++.. ..|+    ...+..+..++...|++++|+..++++++.+|+++..+..++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            45678889999999999999999999986 5666    567888889999999999999999999999999999999999


Q ss_pred             HHHHccCChHHHHHHHHHHHhcCc
Q 036661          570 NIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       570 ~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      .+|...|++++|.+.+++..+..+
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~~p  130 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVSLEP  130 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999987654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.63  E-value=8e-08  Score=91.29  Aligned_cols=151  Identities=7%  Similarity=-0.081  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661          425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD  504 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  504 (615)
                      ...+..+...+.+.|++++|+..|++....  .|+...       +...++.+++...+   .        ...|..++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~  238 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence            345667777777888888888888888775  454432       23334444443222   1        136778999


Q ss_pred             HHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH-HccCChHHH
Q 036661          505 LLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY-ALGGRWDGV  581 (615)
Q Consensus       505 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A  581 (615)
                      +|.+.|++++|+..++++.  .+.+...+..++.++...|++++|+..++++++++|+++.++..++.+. ...+..+++
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987  3445678899999999999999999999999999999999999999884 456778889


Q ss_pred             HHHHHHHHhcCccc
Q 036661          582 ANLRTMMKRNQVKK  595 (615)
Q Consensus       582 ~~~~~~~~~~~~~~  595 (615)
                      .+.|++|.+..+..
T Consensus       319 ~~~~~~~l~~~p~~  332 (338)
T 2if4_A          319 KEMYKGIFKGKDEG  332 (338)
T ss_dssp             --------------
T ss_pred             HHHHHHhhCCCCCC
Confidence            99999988766543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.61  E-value=3e-07  Score=80.26  Aligned_cols=154  Identities=14%  Similarity=0.013  Sum_probs=104.0

Q ss_pred             HhcCChHHHHH---HHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHhhccCch
Q 036661          405 SKCGSIGDARE---LFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMME----LDLRPN-RVTFLAVLQACTHAGFL  476 (615)
Q Consensus       405 ~~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~~~~  476 (615)
                      ...|++++|.+   .+..-......++..+...+...|++++|...+++..+    .+..|. ..++..+...+...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            34567777777   55443333456777778888888888888888887766    121222 24677777788888888


Q ss_pred             HHHHHHHHHHHHhhCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHHhCC
Q 036661          477 EKGWGYFNLMTKVYQVNP-E----LNHYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHRN  543 (615)
Q Consensus       477 ~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~  543 (615)
                      ++|...+++......-.+ +    ...+..++.++...|++++|...+++..    ..++    ..++..+...+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            888888888765422222 2    2456778888888899998888887764    1112    1234667788888999


Q ss_pred             hhHHHHHHHHHhccC
Q 036661          544 IEIGEYVAYRLFELE  558 (615)
Q Consensus       544 ~~~A~~~~~~~~~~~  558 (615)
                      +++|...+++++++.
T Consensus       163 ~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          163 LLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999888654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.61  E-value=1.7e-07  Score=74.95  Aligned_cols=99  Identities=10%  Similarity=-0.017  Sum_probs=89.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661          495 ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY  572 (615)
Q Consensus       495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  572 (615)
                      +...+..++..+...|++++|.+.++++.  .+.+...+..++..+...|++++|...++++++.+|+++..+..++.+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            34567788899999999999999999986  4446678888999999999999999999999999999999999999999


Q ss_pred             HccCChHHHHHHHHHHHhcCc
Q 036661          573 ALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       573 ~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ...|++++|.+.+++..+..+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p  111 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDP  111 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST
T ss_pred             HHhCCHHHHHHHHHHHHhcCc
Confidence            999999999999999987654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.60  E-value=9.8e-07  Score=73.95  Aligned_cols=129  Identities=13%  Similarity=0.041  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHH
Q 036661          426 VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADL  505 (615)
Q Consensus       426 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  505 (615)
                      ..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.  .+.+...+..++.+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~   90 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence            456777888888999999999999988863 345678888888899999999999999998853  23456778888899


Q ss_pred             HHhcCChHHHHHHHHhCC-CCC-ChhhHHH--HHHHHHHhCChhHHHHHHHHHhcc
Q 036661          506 LGRKGKLKEALDFVQSMP-IKS-DAGIWGT--LLCACKIHRNIEIGEYVAYRLFEL  557 (615)
Q Consensus       506 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~  557 (615)
                      +...|++++|.+.++++. ..| +...+..  .+..+...|++++|...+++..++
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            999999999999998876 333 4444433  334467789999999998877553

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.56  E-value=3.2e-06  Score=78.68  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=27.2

Q ss_pred             CCCCCChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          559 PHSAAPYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       559 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      +.++.++..|+++|...|+.++|.++++.+.+
T Consensus       299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            45667788899999999999999999999864

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.55  E-value=3.1e-07  Score=74.27  Aligned_cols=101  Identities=8%  Similarity=-0.146  Sum_probs=73.3

Q ss_pred             CCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHH
Q 036661          458 PNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLL  535 (615)
Q Consensus       458 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~  535 (615)
                      .+...+..+...+...|++++|...|++....  .+.+...+..++.++...|++++|...+++..  .+.+...+..++
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            34566667777777777777777777777643  12335667777777777777777777777765  333456777788


Q ss_pred             HHHHHhCChhHHHHHHHHHhccCCC
Q 036661          536 CACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       536 ~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      .++...|++++|+..++++++++|+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChh
Confidence            8888888888888888888888887

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.52  E-value=1.7e-07  Score=78.45  Aligned_cols=102  Identities=11%  Similarity=-0.030  Sum_probs=55.2

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhC----------------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQ----------------VNPELNHYSCMADLLGRKGKLKEALDFVQSMP-  523 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-  523 (615)
                      ..+......+.+.|++++|+..|.+......                .+.....|..++.+|.+.|++++|+..++++. 
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            4566667777777888888888777764210                01112344445555555555555555555544 


Q ss_pred             -CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC
Q 036661          524 -IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA  562 (615)
Q Consensus       524 -~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~  562 (615)
                       .+.+...+..++.++...|++++|...++++++++|+++
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence             222334455555555555555555555555555555544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.52  E-value=5.5e-06  Score=76.72  Aligned_cols=166  Identities=13%  Similarity=0.044  Sum_probs=90.4

Q ss_pred             ChHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc-hHHHHHHHHHHHHhhCCCCChhHHH
Q 036661          424 TVVSWTTMIAGCALNG--EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGF-LEKGWGYFNLMTKVYQVNPELNHYS  500 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~  500 (615)
                      +..+|+.-..++...+  ++++++.+++++.+.. +-|...|+.-..++...|. ++++++.++++.+.  -+-+...|+
T Consensus       107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~  183 (331)
T 3dss_A          107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWH  183 (331)
T ss_dssp             CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHH
T ss_pred             CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHH
Confidence            4445555555555544  3566666666666653 3344555555555555555 46666666666642  123344455


Q ss_pred             HHHHHHHhc--------------CChHHHHHHHHhCC--CCCChhhHHHHHHHHHHh-----------CChhHHHHHHHH
Q 036661          501 CMADLLGRK--------------GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIH-----------RNIEIGEYVAYR  553 (615)
Q Consensus       501 ~l~~~~~~~--------------g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~  553 (615)
                      ....++.+.              +.++++++.+.+..  .+-|...|..+...+...           +.++++++.+++
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e  263 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE  263 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence            444444433              34566666666655  333455555444444333           346777777788


Q ss_pred             HhccCCCCCCChHhHHHHH---HccCChHHHHHHHHHHHhcC
Q 036661          554 LFELEPHSAAPYVEMANIY---ALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       554 ~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~  592 (615)
                      +++++|++..++..++.+.   ...|..++....+.++.+-.
T Consensus       264 lle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D  305 (331)
T 3dss_A          264 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  305 (331)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred             HHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence            8888887644433333221   13566777777777776544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.51  E-value=3.5e-08  Score=77.37  Aligned_cols=89  Identities=8%  Similarity=0.044  Sum_probs=40.6

Q ss_pred             cCchHHHHHHHHHHHHhhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHH
Q 036661          473 AGFLEKGWGYFNLMTKVYQ--VNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGE  548 (615)
Q Consensus       473 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~  548 (615)
                      .|++++|+..|+++.+. +  -+.+...+..++.+|...|++++|.+.++++.  .+.+...+..++.++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            35555566666655521 1  01122344445555555555555555555543  2222334444455555555555555


Q ss_pred             HHHHHHhccCCCCC
Q 036661          549 YVAYRLFELEPHSA  562 (615)
Q Consensus       549 ~~~~~~~~~~p~~~  562 (615)
                      ..++++++..|+++
T Consensus        82 ~~~~~al~~~p~~~   95 (117)
T 3k9i_A           82 ELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHHCCCH
T ss_pred             HHHHHHHHhCCCcH
Confidence            55555555555443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.50  E-value=4.4e-07  Score=83.71  Aligned_cols=114  Identities=6%  Similarity=-0.156  Sum_probs=90.4

Q ss_pred             CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHH
Q 036661          459 NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLC  536 (615)
Q Consensus       459 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~  536 (615)
                      +...+..+...+...|++++|...|+++.+.  .+.+...+..++.+|.+.|++++|.+.++++. ..| +...+..++.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4567777888888999999999999988853  22356778888899999999999999998876 444 4567788888


Q ss_pred             HHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661          537 ACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL  574 (615)
Q Consensus       537 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  574 (615)
                      ++...|++++|+..++++++++|+++..+...++...+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~  118 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR  118 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH
Confidence            88899999999999999999998887776666655553

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.50  E-value=1.9e-07  Score=93.17  Aligned_cols=119  Identities=7%  Similarity=-0.057  Sum_probs=93.2

Q ss_pred             HHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCC
Q 036661          466 VLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRN  543 (615)
Q Consensus       466 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~  543 (615)
                      +...+.+.|++++|.+.++++.+.  .+.+...+..++.+|.+.|++++|++.++++. ..| +...+..++.++...|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            344566778888888888888753  22346678888888888888888888888876 444 46678888899999999


Q ss_pred             hhHHHHHHHHHhccCCCCCCChHhHHHH--HHccCChHHHHHHHH
Q 036661          544 IEIGEYVAYRLFELEPHSAAPYVEMANI--YALGGRWDGVANLRT  586 (615)
Q Consensus       544 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~  586 (615)
                      +++|++.++++++++|+++..+..++.+  +.+.|++++|++.++
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999888  888899999999987

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.50  E-value=2.3e-07  Score=74.18  Aligned_cols=109  Identities=5%  Similarity=-0.005  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-C----CCC----hhhH
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-I----KSD----AGIW  531 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~p~----~~~~  531 (615)
                      ..+..+...+...|++++|...+++..+.  .+.+...+..++.++...|++++|...++++. .    .++    ...+
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            34555666666666777777666666642  12344555566666666666666666666554 1    111    3445


Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661          532 GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY  572 (615)
Q Consensus       532 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  572 (615)
                      ..++.++...|++++|...++++++..| ++.....++.++
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~  122 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence            5555666666666666666666666655 555555544443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.49  E-value=6.3e-07  Score=70.45  Aligned_cols=98  Identities=8%  Similarity=-0.024  Sum_probs=67.8

Q ss_pred             HHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHH
Q 036661          463 FLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKI  540 (615)
Q Consensus       463 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~  540 (615)
                      +..+...+.+.|++++|+..++++.+.  .+.+...+..++.++...|++++|+..+++.. ..| +...+..++.++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            344556667777888888887777743  22345667777777888888888888887775 333 45677788888888


Q ss_pred             hCChhHHHHHHHHHhccCCCCC
Q 036661          541 HRNIEIGEYVAYRLFELEPHSA  562 (615)
Q Consensus       541 ~~~~~~A~~~~~~~~~~~p~~~  562 (615)
                      .|++++|+..++++++.+|+++
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHC------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCC
Confidence            8999999999999999888754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.48  E-value=5.5e-08  Score=84.65  Aligned_cols=97  Identities=6%  Similarity=-0.056  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-C----------------hhhHHHHHHHHHHhCChhHHHHHHHHHhccC
Q 036661          497 NHYSCMADLLGRKGKLKEALDFVQSMP-IKS-D----------------AGIWGTLLCACKIHRNIEIGEYVAYRLFELE  558 (615)
Q Consensus       497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  558 (615)
                      ..+..++..+.+.|++++|.+.|++.. ..| +                ...+..++.++...|++++|+..++++++++
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            345566777777777777777777664 222 2                2577888899999999999999999999999


Q ss_pred             CCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          559 PHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       559 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      |+++.++..++.+|...|++++|++.+++..+..+
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  153 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  153 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999987654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.48  E-value=7.9e-05  Score=69.34  Aligned_cols=232  Identities=12%  Similarity=-0.005  Sum_probs=154.1

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccc-hhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhc-C-ChH
Q 036661          335 AQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDMYSKC-G-SIG  411 (615)
Q Consensus       335 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~  411 (615)
                      .+.+..++|++++++++..+ +-+...++.--..+...| .++++..+++.+.... +-+..+++.-..++.+. + +++
T Consensus        65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence            33444567788777777653 223333443333344445 4777888888777765 45566666655555555 5 788


Q ss_pred             HHHHHHhcCCC---CChHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc-----
Q 036661          412 DARELFYALPE---KTVVSWTTMIAGCALNGEFV--------EALDLFHQMMELDLRPNRVTFLAVLQACTHAGF-----  475 (615)
Q Consensus       412 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-----  475 (615)
                      +++++++.+.+   .|..+|+--..++.+.+.++        ++++.++++++.+ .-|...|+.....+.+.+.     
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~  221 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS  221 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence            88888888776   35567766666665555555        8999999999874 4466788888777777775     


Q ss_pred             --hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhCC-C-------C
Q 036661          476 --LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKL--------------------KEALDFVQSMP-I-------K  525 (615)
Q Consensus       476 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~-~-------~  525 (615)
                        ++++++.++++...  .+-+...|+-+-..+.+.|+.                    .+..++..++. .       .
T Consensus       222 ~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (349)
T 3q7a_A          222 RSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL  299 (349)
T ss_dssp             HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred             HHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence              68888888888843  234556777777777777664                    34455555554 1       2


Q ss_pred             CChhhHHHHHHHHHHhCChhHHHHHHHHHh-ccCCCCCCChHhHHHH
Q 036661          526 SDAGIWGTLLCACKIHRNIEIGEYVAYRLF-ELEPHSAAPYVEMANI  571 (615)
Q Consensus       526 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~  571 (615)
                      +....+..++..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus       300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~  346 (349)
T 3q7a_A          300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE  346 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            456678888899999999999999999997 7788766666555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.47  E-value=3.9e-07  Score=73.63  Aligned_cols=106  Identities=12%  Similarity=0.012  Sum_probs=77.6

Q ss_pred             HHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHhCC-C-----
Q 036661          464 LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-------------LNHYSCMADLLGRKGKLKEALDFVQSMP-I-----  524 (615)
Q Consensus       464 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-----  524 (615)
                      ......+.+.|++++|+..|++..+-   .|+             ...|..++.++.+.|++++|+..+++.. .     
T Consensus        15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           15 LSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            33444555566666666666665532   222             2267777888888888888888877765 4     


Q ss_pred             --CCCh-hhH----HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661          525 --KSDA-GIW----GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY  572 (615)
Q Consensus       525 --~p~~-~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  572 (615)
                        .|+. ..|    ...+.++...|++++|+..|+++++++|++...+..+..+-
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~  146 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM  146 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence              7764 477    88999999999999999999999999999988887775543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.43  E-value=4.5e-07  Score=75.63  Aligned_cols=93  Identities=13%  Similarity=0.115  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC------CCC
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH------SAA  563 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~  563 (615)
                      .+..++..+...|++++|.+.+++..    ..++    ...+..++..+...|++++|...++++++..+.      .+.
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            34445555555555555555555442    0011    234455666666777777777777777654322      134


Q ss_pred             ChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          564 PYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       564 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      .+..++.+|...|++++|.+.+++..+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            677788888888888888888887765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.42  E-value=3.8e-07  Score=76.25  Aligned_cols=92  Identities=12%  Similarity=0.068  Sum_probs=52.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHhCC-C------------------CCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          501 CMADLLGRKGKLKEALDFVQSMP-I------------------KSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       501 ~l~~~~~~~g~~~~A~~~~~~~~-~------------------~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      ..+..+.+.|++++|+..|++.. .                  .|. ...+..++.++.+.|++++|+..++++++++|+
T Consensus        16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~   95 (162)
T 3rkv_A           16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET   95 (162)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence            34555556666666666665543 1                  111 134555555566666666666666666666666


Q ss_pred             CCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          561 SAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       561 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      ++.+|..+|.+|...|++++|.+.+++..+..
T Consensus        96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           96 NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            66666666666666666666666666655543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.42  E-value=2e-06  Score=85.24  Aligned_cols=164  Identities=9%  Similarity=-0.123  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHhhccCchHHHHHHHHHHHHhh---CCCCC-hh
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELD-LRPNR----VTFLAVLQACTHAGFLEKGWGYFNLMTKVY---QVNPE-LN  497 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~  497 (615)
                      ++..++..|...|++++|.+.+.++...- -.++.    .+.+.+...+...|+++.+..+++......   +..+. ..
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            35677888888888888888888776521 11222    123334445566788999998888776422   22222 45


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC-------C
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP-------IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS-------A  562 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~  562 (615)
                      ++..++..|...|++++|..++++..       .++. ..++..++..|...|++++|...+++++...|..       .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            67788999999999999999988763       1221 3467778888999999999999999988765332       2


Q ss_pred             CChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          563 APYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       563 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ..+..++.++...|++++|...+.+..+
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3566678888899999999998887765

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.42  E-value=1.6e-06  Score=69.09  Aligned_cols=102  Identities=13%  Similarity=0.007  Sum_probs=67.8

Q ss_pred             HHHHhhccCchHHHHHHHHHHHHhhCCCCC-h---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHH
Q 036661          466 VLQACTHAGFLEKGWGYFNLMTKVYQVNPE-L---NHYSCMADLLGRKGKLKEALDFVQSMP-IKSD----AGIWGTLLC  536 (615)
Q Consensus       466 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~  536 (615)
                      +...+...|++++|...|+++.+.   .|+ .   ..+..++.++.+.|++++|...++++. ..|+    ...+..++.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            445566667777777777776643   222 2   355566777777777777777777665 2232    445667777


Q ss_pred             HHHHhCChhHHHHHHHHHhccCCCCCCChHhHHH
Q 036661          537 ACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMAN  570 (615)
Q Consensus       537 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  570 (615)
                      ++...|++++|...++++++..|+++........
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            8888888888888888888888886655444433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.41  E-value=1.3e-06  Score=67.47  Aligned_cols=100  Identities=13%  Similarity=0.055  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---ChhhHHHHHH
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS---DAGIWGTLLC  536 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~  536 (615)
                      ..+..+...+...|++++|...++++.+.  .+.+...+..++.++...|++++|.+.+++.. ..|   +...+..++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            34455556666666666666666666642  12334556666667777777777777776664 333   3556677777


Q ss_pred             HHHHh-CChhHHHHHHHHHhccCCCCC
Q 036661          537 ACKIH-RNIEIGEYVAYRLFELEPHSA  562 (615)
Q Consensus       537 ~~~~~-~~~~~A~~~~~~~~~~~p~~~  562 (615)
                      ++... |++++|.+.++++++..|.++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            77777 888888888888887777654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.41  E-value=6.4e-07  Score=71.49  Aligned_cols=107  Identities=14%  Similarity=0.113  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCC-CCC----hhHHHH
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQV-NPE----LNHYSC  501 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~  501 (615)
                      .|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.....- .++    ...+..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            45555566666666666666666666542 334455555566666666666666666665533111 111    445555


Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHH
Q 036661          502 MADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTL  534 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l  534 (615)
                      ++.++...|++++|.+.++++. ..|+...+..+
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l  118 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC  118 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            6666666666666666666554 33444333333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.40  E-value=7e-08  Score=74.76  Aligned_cols=94  Identities=6%  Similarity=-0.061  Sum_probs=78.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC------CCChH
Q 036661          495 ELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS------AAPYV  566 (615)
Q Consensus       495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~  566 (615)
                      +...+..++..+.+.|++++|.+.+++..  .+.+...+..++.++...|++++|+..++++++++|++      ...+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            44567778888888888888888888876  34456788888999999999999999999999999998      77888


Q ss_pred             hHHHHHHccCChHHHHHHHHHH
Q 036661          567 EMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       567 ~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                      .++.++...|++++|.+.++++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHhHhhhHhHHHHh
Confidence            8899999999888887766544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.39  E-value=3.8e-06  Score=79.61  Aligned_cols=128  Identities=9%  Similarity=-0.033  Sum_probs=97.7

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhhccCchHHHHHHHHHHHH
Q 036661          425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPN----------------RVTFLAVLQACTHAGFLEKGWGYFNLMTK  488 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  488 (615)
                      ...|..+...+.+.|++++|+..|++.++..  |+                ...+..+..+|.+.|++++|+..++++.+
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567777778888888888888888888763  33                46788888888889999999999988885


Q ss_pred             hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHH-HHHHHHHhc
Q 036661          489 VYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIG-EYVAYRLFE  556 (615)
Q Consensus       489 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~  556 (615)
                      .  .+.+...+..++.+|...|++++|...|+++. ..| +...+..+..++...|+.++| ...+++++.
T Consensus       225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3  23356778888888999999999999988876 334 456777888888888888888 456666654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.38  E-value=8.5e-07  Score=85.10  Aligned_cols=89  Identities=9%  Similarity=-0.050  Sum_probs=78.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          496 LNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ...|..++.+|.+.|++++|++.++++. ..| +...+..++.++...|++++|+..++++++++|+++.++..++.++.
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~  352 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  352 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4678888999999999999999999886 444 56688889999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHH
Q 036661          574 LGGRWDGVANL  584 (615)
Q Consensus       574 ~~g~~~~A~~~  584 (615)
                      ..++++++.+.
T Consensus       353 ~~~~~~~a~k~  363 (370)
T 1ihg_A          353 KIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            99988887654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.38  E-value=1.2e-06  Score=87.43  Aligned_cols=125  Identities=14%  Similarity=0.071  Sum_probs=72.5

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChH
Q 036661          434 GCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLK  513 (615)
Q Consensus       434 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  513 (615)
                      .+.+.|++++|++.+++..+.. +.+...+..+..+|.+.|++++|++.++++.+.  .+.+...+..++.+|.+.|+++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence            3445667777777777766652 223456666666777777777777777776632  2223456666677777777777


Q ss_pred             HHHHHHHhCC-CCC-ChhhHHHHHHH--HHHhCChhHHHHHHH-----------HHhccCCCC
Q 036661          514 EALDFVQSMP-IKS-DAGIWGTLLCA--CKIHRNIEIGEYVAY-----------RLFELEPHS  561 (615)
Q Consensus       514 ~A~~~~~~~~-~~p-~~~~~~~l~~~--~~~~~~~~~A~~~~~-----------~~~~~~p~~  561 (615)
                      +|.+.++++. ..| +...+..+..+  +...|++++|++.++           ++++++|+.
T Consensus        92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            7777776664 222 23344444444  566677777777777           666666553

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.38  E-value=5.3e-06  Score=65.76  Aligned_cols=60  Identities=10%  Similarity=0.046  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMT  487 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  487 (615)
                      .+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            34455555666666666666666666542 2233455555566666666666666666555

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.37  E-value=3.7e-07  Score=71.40  Aligned_cols=86  Identities=16%  Similarity=0.041  Sum_probs=63.9

Q ss_pred             hcCChHHHHHHHHhCC-C---CCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHH
Q 036661          508 RKGKLKEALDFVQSMP-I---KSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVA  582 (615)
Q Consensus       508 ~~g~~~~A~~~~~~~~-~---~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  582 (615)
                      ..|++++|+..|++.. .   .|+ ...+..++.++...|++++|+..++++++.+|+++.++..++.+|...|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            3577888888888776 3   243 3467777788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCc
Q 036661          583 NLRTMMKRNQV  593 (615)
Q Consensus       583 ~~~~~~~~~~~  593 (615)
                      +.+++..+..+
T Consensus        82 ~~~~~al~~~p   92 (117)
T 3k9i_A           82 ELLLKIIAETS   92 (117)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhCC
Confidence            88888776543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.37  E-value=1.1e-05  Score=81.94  Aligned_cols=169  Identities=8%  Similarity=0.016  Sum_probs=135.9

Q ss_pred             ChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC-
Q 036661          409 SIGDARELFYALPE---KTVVSWTTMIAGCALNGE----------FVEALDLFHQMMELDLRPNRVTFLAVLQACTHAG-  474 (615)
Q Consensus       409 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-  474 (615)
                      ..++|.+.++.+..   .+..+|+.-..++...++          ++++++.++++.+.. +-+..+|..-..++.+.+ 
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            34667777777665   345677776666666666          899999999999873 445678888888888888 


Q ss_pred             -chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHh---------
Q 036661          475 -FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG-KLKEALDFVQSMP-IKS-DAGIWGTLLCACKIH---------  541 (615)
Q Consensus       475 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~---------  541 (615)
                       +++++++.++++.+.  -+-+...|+.-..++.+.| .++++++.++++. ..| +..+|......+...         
T Consensus       123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence             679999999999963  2445678888888888889 8999999999987 444 677888887776653         


Q ss_pred             -----CChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHH
Q 036661          542 -----RNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDG  580 (615)
Q Consensus       542 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  580 (615)
                           +.++++.+.++++++.+|++..+|..+.+++.+.|++++
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                 567999999999999999999999999999999998665

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.35  E-value=6.1e-05  Score=69.75  Aligned_cols=193  Identities=12%  Similarity=0.022  Sum_probs=129.7

Q ss_pred             hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC--ChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCC-hHHHHHHH
Q 036661          375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG--SIGDARELFYALPE---KTVVSWTTMIAGCALNGE-FVEALDLF  448 (615)
Q Consensus       375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~  448 (615)
                      ++.+..+++.+.... +-+..+++.-.-++.+.+  .++++..+++.+.+   .|..+|+--..++...|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            566677777776655 455666666555566666  47888888887765   466778777777777787 58899999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHhhcc--------------CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc-----
Q 036661          449 HQMMELDLRPNRVTFLAVLQACTHA--------------GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK-----  509 (615)
Q Consensus       449 ~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  509 (615)
                      +++++.. +-|...|+.....+...              +.++++++.+......  .+-+...|+-+-..+.+.     
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence            9998874 34556666655544433              4578888888888742  234455666555555544     


Q ss_pred             ------CChHHHHHHHHhCC-CCCChhhHHHHHHHH-----HHhCChhHHHHHHHHHhccCCCCCCChHhHHHHH
Q 036661          510 ------GKLKEALDFVQSMP-IKSDAGIWGTLLCAC-----KIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIY  572 (615)
Q Consensus       510 ------g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  572 (615)
                            +.++++++.++++. ..|+. .|..+..+.     ...|..++....+.++.+++|.....|..+..-+
T Consensus       246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence                  45788888888887 56664 343322222     2357788999999999999998766666665443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.31  E-value=2.5e-07  Score=74.59  Aligned_cols=84  Identities=10%  Similarity=-0.073  Sum_probs=51.4

Q ss_pred             CChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCC----------hhHHHHHHHHHhccCCCCCCChHhHHHHHHccC-
Q 036661          510 GKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRN----------IEIGEYVAYRLFELEPHSAAPYVEMANIYALGG-  576 (615)
Q Consensus       510 g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-  576 (615)
                      +.+++|++.+++..  .+.+...|..+..++...++          +++|+..++++++++|+++.+|..+|.+|...| 
T Consensus        16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~   95 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF   95 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence            34444544444443  22233444444444444433          457777777777777777777777777777664 


Q ss_pred             ----------ChHHHHHHHHHHHhcCc
Q 036661          577 ----------RWDGVANLRTMMKRNQV  593 (615)
Q Consensus       577 ----------~~~~A~~~~~~~~~~~~  593 (615)
                                ++++|++.|++..+..+
T Consensus        96 l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           96 LTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cCcchhhhhccHHHHHHHHHHHHHhCC
Confidence                      67777777777776554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.29  E-value=1.9e-06  Score=64.91  Aligned_cols=66  Identities=17%  Similarity=0.083  Sum_probs=57.3

Q ss_pred             ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcC
Q 036661          527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      +...+..++.++...|++++|+..++++++++|+++.+|..++.+|...|++++|++.+++..+..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            456778888888889999999999999999999999999999999999999999999998887643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.28  E-value=2.8e-06  Score=80.54  Aligned_cols=153  Identities=10%  Similarity=0.004  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 036661          394 VMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHA  473 (615)
Q Consensus       394 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  473 (615)
                      ...+..+...+.+.|++++|...|++....++...     .+...++..++...+.          ...+..+..+|.+.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~  243 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL  243 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence            44577788889999999999999987654221111     1122333333332221          13677888899999


Q ss_pred             CchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCh-hhHHHHHHHH-HHhCChhHHHHH
Q 036661          474 GFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA-GIWGTLLCAC-KIHRNIEIGEYV  550 (615)
Q Consensus       474 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~-~~~~~~~~A~~~  550 (615)
                      |++++|+..++++.+.  .+.+...+..++.+|...|++++|...|+++. ..|+. ..+..+.... ...+..+.+...
T Consensus       244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~  321 (338)
T 2if4_A          244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM  321 (338)
T ss_dssp             TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999853  23356788899999999999999999999987 55543 3455555442 345678889999


Q ss_pred             HHHHhccCCCCCC
Q 036661          551 AYRLFELEPHSAA  563 (615)
Q Consensus       551 ~~~~~~~~p~~~~  563 (615)
                      ++++++..|+++.
T Consensus       322 ~~~~l~~~p~~~~  334 (338)
T 2if4_A          322 YKGIFKGKDEGGA  334 (338)
T ss_dssp             -------------
T ss_pred             HHHhhCCCCCCCC
Confidence            9999999998653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.26  E-value=4.7e-06  Score=69.31  Aligned_cols=133  Identities=13%  Similarity=0.088  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC----hh
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDL-RPNR----VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE----LN  497 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~  497 (615)
                      ++..+...+...|++++|+..+++..+... .++.    .++..+...+...|++++|...+++..+...-.++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            456666777777777777777777665310 0111    35666777788888888888888877643221122    34


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhccCC
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFELEP  559 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p  559 (615)
                      .+..++.++...|++++|.+.+++..    ...+    ...+..+...+...|++++|...+++++++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            56677888888888888888887764    1111    23566777888889999999999999887644

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.24  E-value=3.4e-06  Score=62.02  Aligned_cols=73  Identities=11%  Similarity=0.015  Sum_probs=62.5

Q ss_pred             CCChhhHHHHHHHHHHhCC---hhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcccCCc
Q 036661          525 KSDAGIWGTLLCACKIHRN---IEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVKKFPG  598 (615)
Q Consensus       525 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  598 (615)
                      +++...+..++.++...++   .++|..+++++++++|+++.++..+|..+.+.|+|++|+..|+++.+..+. +|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~   78 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD   78 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence            3456677778877765554   699999999999999999999999999999999999999999999998876 553

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.22  E-value=2.7e-06  Score=62.74  Aligned_cols=81  Identities=17%  Similarity=0.229  Sum_probs=61.3

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          496 LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ...+..++..+...|++++|...+++..  .+.+...+..++.++...|++++|...++++++++|+++..+..++.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            3456667777777777777777777765  33345677778888888888888888888888888888888888888876


Q ss_pred             ccC
Q 036661          574 LGG  576 (615)
Q Consensus       574 ~~g  576 (615)
                      +.|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.22  E-value=1.5e-06  Score=67.67  Aligned_cols=81  Identities=6%  Similarity=-0.103  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHh
Q 036661          478 KGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLF  555 (615)
Q Consensus       478 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  555 (615)
                      +|+..|++..+.  .+.+...+..++.+|...|++++|...+++..  .+.+...+..++.++...|++++|...+++++
T Consensus         3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344555555421  12233445555555555555555555555544  22233445555555555555555555555555


Q ss_pred             ccCCC
Q 036661          556 ELEPH  560 (615)
Q Consensus       556 ~~~p~  560 (615)
                      ++.|+
T Consensus        81 ~~~~~   85 (115)
T 2kat_A           81 AAAQS   85 (115)
T ss_dssp             HHHHH
T ss_pred             Hhccc
Confidence            55443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=9.1e-06  Score=80.43  Aligned_cols=160  Identities=9%  Similarity=-0.021  Sum_probs=119.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC
Q 036661          432 IAGCALNGEFVEALDLFHQMMELDLRPN----------------RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE  495 (615)
Q Consensus       432 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  495 (615)
                      ...+...|++++|++.|.++.+......                ...+..+...|...|++++|.+++..+.+..+..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            3455677888888888888887532111                124677889999999999999999988764433333


Q ss_pred             h----hHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccC-----
Q 036661          496 L----NHYSCMADLLGRKGKLKEALDFVQSMP-------IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELE-----  558 (615)
Q Consensus       496 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----  558 (615)
                      .    .+.+.+...+...|++++|.+++++..       ..+. ..++..++..+...|++++|...+++++...     
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            2    233445556667899999999987763       2222 4467788899999999999999999987642     


Q ss_pred             -CCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          559 -PHSAAPYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       559 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                       |....++..++.+|...|++++|..++++....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  204 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA  204 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence             223458889999999999999999999988753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.18  E-value=2.7e-06  Score=84.41  Aligned_cols=67  Identities=6%  Similarity=-0.042  Sum_probs=61.4

Q ss_pred             hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          528 AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      ...+..+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|+++.+..+.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~  383 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ  383 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            4678889999999999999999999999999999999999999999999999999999999876543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.18  E-value=5.4e-06  Score=81.98  Aligned_cols=126  Identities=10%  Similarity=-0.001  Sum_probs=89.3

Q ss_pred             hhccCchHHHHHHHHHHHHhhC--CCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCh-hhHHH
Q 036661          470 CTHAGFLEKGWGYFNLMTKVYQ--VNP----ELNHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDA-GIWGT  533 (615)
Q Consensus       470 ~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~  533 (615)
                      +..+|++++|+.++++..+...  +.|    ...+++.|+.+|...|++++|..++++..         ..|+. .+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4566777777777776654211  112    13467777777778888888777776653         33432 36778


Q ss_pred             HHHHHHHhCChhHHHHHHHHHhc-----cCCCCCC---ChHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661          534 LLCACKIHRNIEIGEYVAYRLFE-----LEPHSAA---PYVEMANIYALGGRWDGVANLRTMMKRNQVKK  595 (615)
Q Consensus       534 l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  595 (615)
                      ++..|...|++++|+.+++++++     +.|++|.   ....+..++..+|++++|..+|+++++.....
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~  468 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN  468 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88888899999999999998876     4577654   44577888889999999999999998865433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.09  E-value=5.1e-06  Score=79.67  Aligned_cols=114  Identities=4%  Similarity=-0.073  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 036661          461 VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKS-DAGIWGTLLCACK  539 (615)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~  539 (615)
                      ..+..+...+.+.|++++|+..|+++.+..   +...          .....+++.+      ..| +...+..+..++.
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~~------~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGAK------LQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHGG------GHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHHH------HHHHHHHHHHHHHHHHH
Confidence            456667777778888888888888777421   1100          0001111110      112 3457888899999


Q ss_pred             HhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          540 IHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +.|++++|+..++++++++|+++.+|..++.+|...|++++|++.++++.+..+
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P  338 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  338 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999987654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.06  E-value=4.5e-05  Score=77.42  Aligned_cols=152  Identities=9%  Similarity=0.006  Sum_probs=126.2

Q ss_pred             CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCc----------hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 036661          439 GEFVEALDLFHQMMELDLRPN-RVTFLAVLQACTHAGF----------LEKGWGYFNLMTKVYQVNPELNHYSCMADLLG  507 (615)
Q Consensus       439 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  507 (615)
                      ...++|++.++++...  .|+ ...|+.-..++...|+          ++++++.++.+.+.  .+.+..+|..-..++.
T Consensus        43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS  118 (567)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            3456889999999997  555 4567766666666666          89999999999863  3456678888888999


Q ss_pred             hcC--ChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhC-ChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc-------
Q 036661          508 RKG--KLKEALDFVQSMP--IKSDAGIWGTLLCACKIHR-NIEIGEYVAYRLFELEPHSAAPYVEMANIYALG-------  575 (615)
Q Consensus       508 ~~g--~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------  575 (615)
                      +.|  ++++++++++++.  .+-+..+|..........| .++++.+.++++++.+|++..+|...+.++...       
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence            999  6699999999997  5556789999888888888 899999999999999999999999999998874       


Q ss_pred             -------CChHHHHHHHHHHHhcCcc
Q 036661          576 -------GRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       576 -------g~~~~A~~~~~~~~~~~~~  594 (615)
                             +++++|+++++++....+.
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~P~  224 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTDPN  224 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred             ccccccHHHHHHHHHHHHHHHhhCCC
Confidence                   5679999999998876644

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.00  E-value=1.1e-05  Score=62.11  Aligned_cols=68  Identities=9%  Similarity=-0.075  Sum_probs=62.5

Q ss_pred             ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          527 DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       527 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      +...+..++..+...|++++|+..++++++++|+++.++..++.+|...|++++|++.+++..+..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   70 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST   70 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            45577888899999999999999999999999999999999999999999999999999999876654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.95  E-value=4.8e-05  Score=61.10  Aligned_cols=90  Identities=3%  Similarity=-0.133  Sum_probs=51.7

Q ss_pred             HHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc---
Q 036661          502 MADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL---  574 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---  574 (615)
                      |...|...+.+++|+++|++....-+......+...|..    .+++++|...++++.+.  .++..+..|+.+|..   
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g  108 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG  108 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence            344444444444444444444322334444445555544    55666777777766655  446667777777777   


Q ss_pred             -cCChHHHHHHHHHHHhcCc
Q 036661          575 -GGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       575 -~g~~~~A~~~~~~~~~~~~  593 (615)
                       .+++++|.+++++..+.|.
T Consensus       109 ~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A          109 VVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             SCCCHHHHHHHHHHHHHTTC
T ss_pred             CCcCHHHHHHHHHHHHHCCC
Confidence             6777777777777766654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.86  E-value=2.8e-05  Score=57.10  Aligned_cols=66  Identities=18%  Similarity=0.217  Sum_probs=60.8

Q ss_pred             hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          528 AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.+++..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p   74 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   74 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            456777888999999999999999999999999999999999999999999999999999987654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.86  E-value=1.3e-05  Score=64.51  Aligned_cols=50  Identities=12%  Similarity=0.111  Sum_probs=33.9

Q ss_pred             HHHHHHHHhCC-CCC-ChhhHHHHHHHHHHh-----------CChhHHHHHHHHHhccCCCCC
Q 036661          513 KEALDFVQSMP-IKS-DAGIWGTLLCACKIH-----------RNIEIGEYVAYRLFELEPHSA  562 (615)
Q Consensus       513 ~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~  562 (615)
                      ++|+..|++.. ..| ...+|..++.+|...           |++++|++.|+++++++|++.
T Consensus        63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            35555555554 233 344555555555554           589999999999999999864

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.85  E-value=3.5e-06  Score=79.32  Aligned_cols=259  Identities=13%  Similarity=0.159  Sum_probs=156.1

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhh
Q 036661           21 QWNSQIREAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYA  100 (615)
Q Consensus        21 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (615)
                      .|+.|.++..+.+++.+|++.|-+.      -|+..|..++.++.+.|.+++-...+.-..+..  .++.+-+.|+-+|+
T Consensus        56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA  127 (624)
T 3lvg_A           56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA  127 (624)
T ss_dssp             CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence            7999999999999888888766432      267788999999999999998888777665553  45555678888999


Q ss_pred             cCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 036661          101 KCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSF  180 (615)
Q Consensus       101 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  180 (615)
                      +.++..+.++.+.   .||..-...+.+-|...|.++.|.-+|..+.                                 
T Consensus       128 k~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------------------------------  171 (624)
T 3lvg_A          128 KTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------------------------  171 (624)
T ss_dssp             TSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------------------------------
T ss_pred             hhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------------------------------
Confidence            9888776554443   3677667777777777777776655554332                                 


Q ss_pred             HHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHh
Q 036661          181 GIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTT  260 (615)
Q Consensus       181 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  260 (615)
                                 -|..|...+.+.|++..|.+.-++    ..++.+|-.+-.+|...+.+.-|.-.--.++   +.|  ..
T Consensus       172 -----------N~akLAstLV~L~~yq~AVdaArK----Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vha--de  231 (624)
T 3lvg_A          172 -----------NFGRLASTLVHLGEYQAAVDGARK----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DE  231 (624)
T ss_dssp             -----------CCTTTSSSSSSCSGGGSSTTTTTT----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCS--SC
T ss_pred             -----------cHHHHHHHHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccH--HH
Confidence                       223333344444555444333222    2355566666666666666554433322222   111  12


Q ss_pred             HHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CcccHHH
Q 036661          261 VVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDR-----------TRVSWTA  329 (615)
Q Consensus       261 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~  329 (615)
                      ...++..|-..|.+++...+++...... ......|+-|.-.|++- ++++..+.++..-.+           ....|.-
T Consensus       232 L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~E  309 (624)
T 3lvg_A          232 LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE  309 (624)
T ss_dssp             CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHH
Confidence            2334555666666666666666555211 23445566666666664 444544444443111           3345777


Q ss_pred             HHHHHHhcCChhHHHH
Q 036661          330 MISGYAQKGDLDEALR  345 (615)
Q Consensus       330 ll~~~~~~~~~~~a~~  345 (615)
                      ++-.|.+-.+++.|..
T Consensus       310 lvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          310 LVFLYDKYEEYDNAII  325 (624)
T ss_dssp             HHHHHHHHTCHHHHHH
T ss_pred             HHHHHhcchhHHHHHH
Confidence            7777777777776543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.84  E-value=2.5e-05  Score=60.57  Aligned_cols=77  Identities=9%  Similarity=0.013  Sum_probs=50.2

Q ss_pred             HHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          515 ALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       515 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      |++.+++.. ..| +...+..++..+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            444555443 223 44566666666777777777777777777777777777777777777777777777777766553

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.84  E-value=1.4e-05  Score=59.89  Aligned_cols=81  Identities=14%  Similarity=0.047  Sum_probs=59.9

Q ss_pred             HHHHHHhcCChHHHHHHHHhCC-CCC-Chh-hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCCh
Q 036661          502 MADLLGRKGKLKEALDFVQSMP-IKS-DAG-IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRW  578 (615)
Q Consensus       502 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  578 (615)
                      .+..+.+.|++++|.+.++++. ..| +.. .+..++.++...|++++|+..++++++++|+++.++..        +.+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~   77 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV   77 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence            4566778888888888888776 333 456 77788888888899999999999999999988776632        555


Q ss_pred             HHHHHHHHHHHh
Q 036661          579 DGVANLRTMMKR  590 (615)
Q Consensus       579 ~~A~~~~~~~~~  590 (615)
                      .+|...+++...
T Consensus        78 ~~a~~~~~~~~~   89 (99)
T 2kc7_A           78 MDILNFYNKDMY   89 (99)
T ss_dssp             HHHHHHHCCTTH
T ss_pred             HHHHHHHHHHhc
Confidence            666666654433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.74  E-value=0.0004  Score=55.63  Aligned_cols=112  Identities=13%  Similarity=0.049  Sum_probs=92.7

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHH
Q 036661          439 GEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGKLKE  514 (615)
Q Consensus       439 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~  514 (615)
                      +++++|++.|++..+.| .|+..    |...|...+.+++|.++|++..+.    -+...+..|..+|..    .+++++
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            47889999999999987 55544    777788888889999999998853    456677888889988    899999


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCC
Q 036661          515 ALDFVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEP  559 (615)
Q Consensus       515 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p  559 (615)
                      |+++|++....-+......+...|..    .+|.++|...++++.+...
T Consensus        80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999998744567778888888888    8899999999999988743

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.68  E-value=6e-05  Score=56.37  Aligned_cols=63  Identities=17%  Similarity=0.156  Sum_probs=57.3

Q ss_pred             HHHHHHHHhCChhHHHHHHHHHhccCCCCCC-ChHhHHHHHHccCChHHHHHHHHHHHhcCccc
Q 036661          533 TLLCACKIHRNIEIGEYVAYRLFELEPHSAA-PYVEMANIYALGGRWDGVANLRTMMKRNQVKK  595 (615)
Q Consensus       533 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  595 (615)
                      ..+..+...|++++|+..++++++.+|+++. .+..+|.+|...|++++|++.+++..+..+..
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            3566778899999999999999999999999 99999999999999999999999998876543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.65  E-value=0.00019  Score=71.04  Aligned_cols=123  Identities=10%  Similarity=-0.002  Sum_probs=86.0

Q ss_pred             HHHhcCChHHHHHHHHHHHHcC---CC---CCH-HHHHHHHHHhhccCchHHHHHHHHHHHHhh--CCC---CC-hhHHH
Q 036661          434 GCALNGEFVEALDLFHQMMELD---LR---PNR-VTFLAVLQACTHAGFLEKGWGYFNLMTKVY--QVN---PE-LNHYS  500 (615)
Q Consensus       434 ~~~~~~~~~~a~~~~~~~~~~~---~~---p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~-~~~~~  500 (615)
                      .+...|++++|+.++++..+..   +.   |+. .+++.|..+|...|++++|..++++...-.  -+.   |+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3456788888888887776521   12   222 477888888888899998888888776421  112   22 35688


Q ss_pred             HHHHHHHhcCChHHHHHHHHhCC---------CCCChh-hHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661          501 CMADLLGRKGKLKEALDFVQSMP---------IKSDAG-IWGTLLCACKIHRNIEIGEYVAYRLFE  556 (615)
Q Consensus       501 ~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~  556 (615)
                      .|+.+|...|++++|..+++++.         ..|+.. +...+..++...+.+++|+.+++++.+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999988888764         233322 345555677788899999999988865

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.62  E-value=2.7e-05  Score=73.52  Aligned_cols=236  Identities=11%  Similarity=0.079  Sum_probs=138.7

Q ss_pred             cchHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhcc
Q 036661          190 VSVCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCV  269 (615)
Q Consensus       190 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~  269 (615)
                      +.+|..|..+....+++.+|.+.|-+.    .|...|..+|.+..+.|.+++-+..+.-..+..-.|  ..=+.++-+|+
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA  127 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA  127 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence            445556666666655555555444332    244455556666666666666665554444332222  22234555555


Q ss_pred             CchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC------------------------CCCcc
Q 036661          270 CPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC------------------------DRTRV  325 (615)
Q Consensus       270 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------~~~~~  325 (615)
                      +.++..+.+.++.       .|+..-...+.+-|...|.++.|.-+|..+.                        ..++.
T Consensus       128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k  200 (624)
T 3lvg_A          128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR  200 (624)
T ss_dssp             TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred             hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence            5555444333322       3444445556666666666666666655541                        12667


Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 036661          326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYS  405 (615)
Q Consensus       326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (615)
                      +|-.+-.+|...+++.-|.-.--.++-   .||  ....++..|...|-+++...+++.-.... .....+|+-|.-.|+
T Consensus       201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs  274 (624)
T 3lvg_A          201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS  274 (624)
T ss_dssp             SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence            899999999999988766544333332   122  12245667888888888888887766422 456677888887777


Q ss_pred             hcCChHHHHHHHhcCCC----C-------ChHHHHHHHHHHHhcCChHHHH
Q 036661          406 KCGSIGDARELFYALPE----K-------TVVSWTTMIAGCALNGEFVEAL  445 (615)
Q Consensus       406 ~~g~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~  445 (615)
                      +- ++++..+.++....    |       ....|.-++-.|..-.+++.|.
T Consensus       275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            65 45666665554332    2       3457888888888888888764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.58  E-value=0.0018  Score=60.14  Aligned_cols=137  Identities=13%  Similarity=0.015  Sum_probs=72.4

Q ss_pred             CChHHHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhc----cC----chHHHHHHHHHHHH
Q 036661          423 KTVVSWTTMIAGCA--LNG---EFVEALDLFHQMMELDLRPNR-VTFLAVLQACTH----AG----FLEKGWGYFNLMTK  488 (615)
Q Consensus       423 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~  488 (615)
                      .+...|...+++..  ..+   +..+|..+|++.++.  .|+. ..+..+..+|..    .+    ........++....
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            35666666665533  333   347888999999986  6664 455544444431    00    00011111111111


Q ss_pred             hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          489 VYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       489 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                      ....+.+...+..+...+...|++++|...++++. ..|+...+..+...+...|+.++|.+.+++++.++|..
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            11223444555555555555566666666666665 34555555555566666666666666666666666653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.50  E-value=0.00021  Score=63.38  Aligned_cols=85  Identities=9%  Similarity=0.076  Sum_probs=57.2

Q ss_pred             HHHHHHHhCC-CCCC---hhhHHHHHHHHHH-----hCChhHHHHHHHHHhccCCCC-CCChHhHHHHHHcc-CChHHHH
Q 036661          514 EALDFVQSMP-IKSD---AGIWGTLLCACKI-----HRNIEIGEYVAYRLFELEPHS-AAPYVEMANIYALG-GRWDGVA  582 (615)
Q Consensus       514 ~A~~~~~~~~-~~p~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~  582 (615)
                      .|...++++. ..|+   ...+..++..|.+     -|+.++|+++|+++++++|+. ..+++.+++.|++. |++++|.
T Consensus       181 ~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~  260 (301)
T 3u64_A          181 AAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD  260 (301)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence            3444444443 3343   3455666666655     378888888888888888864 77888888877774 7788888


Q ss_pred             HHHHHHHhcCcccCCc
Q 036661          583 NLRTMMKRNQVKKFPG  598 (615)
Q Consensus       583 ~~~~~~~~~~~~~~~~  598 (615)
                      +++++.+..++..+|+
T Consensus       261 ~~L~kAL~a~p~~~P~  276 (301)
T 3u64_A          261 EALDRALAIDPESVPH  276 (301)
T ss_dssp             HHHHHHHHCCGGGCSS
T ss_pred             HHHHHHHcCCCCCCCC
Confidence            8888887777765554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.50  E-value=0.00054  Score=51.17  Aligned_cols=83  Identities=12%  Similarity=0.053  Sum_probs=50.7

Q ss_pred             ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 036661          424 TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMA  503 (615)
Q Consensus       424 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  503 (615)
                      +...|..+..+|...|++++|+..|++..+.+ +.+...|..+..+|...|++++|.+.|++..+...-.++......+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~   84 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ   84 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence            45566677777777777777777777777653 22345666777777777777777777777664322233444333344


Q ss_pred             HHHH
Q 036661          504 DLLG  507 (615)
Q Consensus       504 ~~~~  507 (615)
                      ..+.
T Consensus        85 ~~l~   88 (100)
T 3ma5_A           85 DAKL   88 (100)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.46  E-value=6e-05  Score=73.23  Aligned_cols=62  Identities=6%  Similarity=-0.022  Sum_probs=47.3

Q ss_pred             hhHHHHHHHHHHhCChhHHHHHHHHHhcc-----CCCCC---CChHhHHHHHHccCChHHHHHHHHHHHh
Q 036661          529 GIWGTLLCACKIHRNIEIGEYVAYRLFEL-----EPHSA---APYVEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      .+++.++.+|...|++++|+.++++++++     .|++|   ..+..||.+|..+|++++|+.++++..+
T Consensus       341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            35677777788888888888888887753     34443   4677888889999999999988888765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.27  E-value=0.00018  Score=70.12  Aligned_cols=85  Identities=12%  Similarity=0.093  Sum_probs=55.1

Q ss_pred             HHhcCChHHHHHHHHhCC------CCCC----hhhHHHHHHHHHHhCChhHHHHHHHHHhcc-----CCCCC---CChHh
Q 036661          506 LGRKGKLKEALDFVQSMP------IKSD----AGIWGTLLCACKIHRNIEIGEYVAYRLFEL-----EPHSA---APYVE  567 (615)
Q Consensus       506 ~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~  567 (615)
                      +.+.|++++|.+++++..      ..|+    ..+++.++.+|...|++++|+.++++++++     .|++|   ..+..
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            334556666666555432      1121    235666777777778888888777777653     34443   45677


Q ss_pred             HHHHHHccCChHHHHHHHHHHHh
Q 036661          568 MANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       568 l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ||.+|..+|++++|+.++++..+
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Confidence            88888888888888888887765

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.18  E-value=0.0012  Score=64.17  Aligned_cols=93  Identities=12%  Similarity=0.006  Sum_probs=58.0

Q ss_pred             ccCchHHHHHHHHHHHHhh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCh-hhHHHHH
Q 036661          472 HAGFLEKGWGYFNLMTKVY--QVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDA-GIWGTLL  535 (615)
Q Consensus       472 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~l~  535 (615)
                      ..|++++|+.++++..+..  -+.|+    ..+++.|+.+|...|++++|..+++++.         ..|+. .+++.++
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            3456666666666655321  11122    2456667777777777777777766653         33333 3567788


Q ss_pred             HHHHHhCChhHHHHHHHHHhcc-----CCCCCCC
Q 036661          536 CACKIHRNIEIGEYVAYRLFEL-----EPHSAAP  564 (615)
Q Consensus       536 ~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~  564 (615)
                      ..|..+|++++|+.++++++++     .|++|.+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            8888888888888888888763     4665443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.18  E-value=0.019  Score=43.64  Aligned_cols=141  Identities=11%  Similarity=0.036  Sum_probs=99.6

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 036661          435 CALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE  514 (615)
Q Consensus       435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  514 (615)
                      +.-.|..++..++..+....   .+..-++.++--....-+-+-..++++.+-+-|.+.+              +|+...
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr   79 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS   79 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence            34568888888888888763   3444555555555555666777777777765433322              344444


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          515 ALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       515 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      ....+-.+.  .+.......+.....+|.-++-.+++..++..+|-+|..+..++.+|.+.|+..+|.++++++-++|++
T Consensus        80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            444443332  234455666777888999999999999987777767999999999999999999999999999999874

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.15  E-value=0.0023  Score=59.53  Aligned_cols=134  Identities=13%  Similarity=0.096  Sum_probs=91.8

Q ss_pred             CCCHHHHHHHHHHh--hccC---chHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHH---hcC-C-------hHHHHHHH
Q 036661          457 RPNRVTFLAVLQAC--THAG---FLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLG---RKG-K-------LKEALDFV  519 (615)
Q Consensus       457 ~p~~~~~~~l~~~~--~~~~---~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~---~~g-~-------~~~A~~~~  519 (615)
                      +.+...|...+++.  ...+   +..+|..+|+++.+   ..|+. ..+..+..+|.   ..+ .       ...|.+..
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~  267 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI  267 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence            45556676666543  3333   46789999999984   36763 34444444432   111 1       11222222


Q ss_pred             HhCC-CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          520 QSMP-IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       520 ~~~~-~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      ..+. .+.+..++..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|.+.+++.....+.
T Consensus       268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            2233 3456667777777777789999999999999999985 667789999999999999999999999876653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.14  E-value=0.0039  Score=45.44  Aligned_cols=68  Identities=9%  Similarity=-0.087  Sum_probs=53.8

Q ss_pred             CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          493 NPELNHYSCMADLLGRKGK---LKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       493 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      +.+...+..++.++...++   .++|..++++..  .+.+...+..++..+.+.|++++|+..|+++++.+|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4556777778877765554   688888888887  3445667777888889999999999999999999998

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.11  E-value=0.3  Score=49.55  Aligned_cols=114  Identities=5%  Similarity=-0.082  Sum_probs=74.0

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 036661          439 GEFVEALDLFHQMMELDLRPNRV----TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE  514 (615)
Q Consensus       439 ~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  514 (615)
                      ++.+.|...+......+ ..+..    ....+.......+...++...+.....   ..++.......+....+.|+++.
T Consensus       228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~  303 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG  303 (618)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred             cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence            48899999998887643 23332    223333344455535566666666542   23444445555666668899999


Q ss_pred             HHHHHHhCCCCC-C-hhhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661          515 ALDFVQSMPIKS-D-AGIWGTLLCACKIHRNIEIGEYVAYRLFE  556 (615)
Q Consensus       515 A~~~~~~~~~~p-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  556 (615)
                      |...|+.+...+ + .....-+..+....|+.++|..+|+++.+
T Consensus       304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            999999998332 2 22233355667778999999999999985

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.06  E-value=0.0014  Score=52.11  Aligned_cols=90  Identities=12%  Similarity=-0.038  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCC-CC-C--ChhhHHHHHHHHHHhCChhHHH
Q 036661          476 LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG---KLKEALDFVQSMP-IK-S--DAGIWGTLLCACKIHRNIEIGE  548 (615)
Q Consensus       476 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~A~  548 (615)
                      ...+.+.|.+..+. + +++..+...++.++++.+   +.++++.++++.. .. |  ....+..+.-++.+.|++++|+
T Consensus        14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            34444445544432 2 356666666777777766   4556777776655 22 4  3456777888889999999999


Q ss_pred             HHHHHHhccCCCCCCChHh
Q 036661          549 YVAYRLFELEPHSAAPYVE  567 (615)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~  567 (615)
                      +.++++++++|++..+...
T Consensus        92 ~y~~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHH
Confidence            9999999999987554443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.05  E-value=0.0026  Score=61.92  Aligned_cols=98  Identities=10%  Similarity=-0.123  Sum_probs=62.0

Q ss_pred             HhhccCchHHHHHHHHHHHHhhC--CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCh-hhHH
Q 036661          469 ACTHAGFLEKGWGYFNLMTKVYQ--VNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP---------IKSDA-GIWG  532 (615)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~  532 (615)
                      .+.++|++++|+.++++..+...  +.|+    ..+++.++.+|...|++++|+.+++++.         ..|+. ..++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            34456677777777766653211  1121    3456667777777777777777776653         23332 3567


Q ss_pred             HHHHHHHHhCChhHHHHHHHHHhc-----cCCCCCCChH
Q 036661          533 TLLCACKIHRNIEIGEYVAYRLFE-----LEPHSAAPYV  566 (615)
Q Consensus       533 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~  566 (615)
                      .++..|...|++++|+.+++++++     +.|++|.+-.
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            788888888888888888888876     3566654443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.04  E-value=0.0016  Score=49.01  Aligned_cols=71  Identities=8%  Similarity=0.097  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCC---------CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHH
Q 036661          499 YSCMADLLGRKGKLKEALDFVQSMP---------IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMA  569 (615)
Q Consensus       499 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~  569 (615)
                      +..++..+.+.|+++.|...++.+.         ..+...++..++.++.+.|+++.|...++++++++|+++.+...+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            3345555555555555555555443         0123457788888999999999999999999999999876655553

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.01  E-value=0.00058  Score=54.31  Aligned_cols=80  Identities=8%  Similarity=-0.131  Sum_probs=65.7

Q ss_pred             HHHHHHHhCC--CCCChhhHHHHHHHHHHhC---ChhHHHHHHHHHhccC-C-CCCCChHhHHHHHHccCChHHHHHHHH
Q 036661          514 EALDFVQSMP--IKSDAGIWGTLLCACKIHR---NIEIGEYVAYRLFELE-P-HSAAPYVEMANIYALGGRWDGVANLRT  586 (615)
Q Consensus       514 ~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~  586 (615)
                      .+.+.|.+..  ..++..+...+.+++.+.+   ++++++.+++++++.+ | ++...++.|+-.|.+.|+|++|+++++
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            3344444332  3567788888999999987   6779999999999998 7 568899999999999999999999999


Q ss_pred             HHHhcCc
Q 036661          587 MMKRNQV  593 (615)
Q Consensus       587 ~~~~~~~  593 (615)
                      ++++..+
T Consensus        96 ~lL~ieP  102 (152)
T 1pc2_A           96 GLLQTEP  102 (152)
T ss_dssp             HHHHHCT
T ss_pred             HHHhcCC
Confidence            9987665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.50  E-value=0.068  Score=57.33  Aligned_cols=158  Identities=14%  Similarity=0.056  Sum_probs=106.9

Q ss_pred             HHHHHHhcCChhHHHH-HHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCC
Q 036661           25 QIREAVDKNEAHKALL-LFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCD  103 (615)
Q Consensus        25 ll~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  103 (615)
                      ..+.....+++++|.+ ++..+.      +...+..++..+.+.|.++.|.++.+.         +.   .-.......|
T Consensus       605 ~~~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~  666 (814)
T 3mkq_A          605 EFQTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVG  666 (814)
T ss_dssp             HHHHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHT
T ss_pred             HHhHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcC
Confidence            3455567888888877 552211      122347777888888998888876431         11   1133456779


Q ss_pred             ChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661          104 RLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIH  183 (615)
Q Consensus       104 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  183 (615)
                      +++.|.++.+.+.  +...|..+...+.+.|+++.|.++|..+..         |..+...+...++.+...++.+....
T Consensus       667 ~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          667 QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999988774  467899999999999999999999998754         34455555557777766666555554


Q ss_pred             hcCCCccchHHHHHHHHHccCCHHHHHHHHHhcc
Q 036661          184 IGVDADVSVCNTWISAYAKCNDLKMAELVFRGIE  217 (615)
Q Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  217 (615)
                      .|      -++....+|.+.|++++|.+++.++.
T Consensus       736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          736 TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            33      23444555666777777777766554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.49  E-value=0.019  Score=43.80  Aligned_cols=91  Identities=12%  Similarity=-0.078  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhCC-CC-C--ChhhHHHHHHHHHHhCChhHHH
Q 036661          476 LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE---ALDFVQSMP-IK-S--DAGIWGTLLCACKIHRNIEIGE  548 (615)
Q Consensus       476 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-p--~~~~~~~l~~~~~~~~~~~~A~  548 (615)
                      ...+.+-|...... + .|+..+--.++.++.+..+...   ++.++++.. .. |  ....+..+.-++.+.|++++|+
T Consensus        17 l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            34444455544432 2 2666666667777777776655   777777765 22 3  2345667778888999999999


Q ss_pred             HHHHHHhccCCCCCCChHhH
Q 036661          549 YVAYRLFELEPHSAAPYVEM  568 (615)
Q Consensus       549 ~~~~~~~~~~p~~~~~~~~l  568 (615)
                      +..+.+++.+|+|..+....
T Consensus        95 ~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           95 KYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHH
Confidence            99999999999876655443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.36  E-value=0.0077  Score=45.12  Aligned_cols=66  Identities=9%  Similarity=-0.150  Sum_probs=55.1

Q ss_pred             hhhHHHHHHHHHHhCChhHHHHHHHHHhccC-------CCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          528 AGIWGTLLCACKIHRNIEIGEYVAYRLFELE-------PHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ..-...++..+...|+++.|...++++++..       +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            3445578888999999999999999998853       23456789999999999999999999999987554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.35  E-value=0.0043  Score=55.15  Aligned_cols=104  Identities=12%  Similarity=0.038  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHHHhCC-CCCC--hhhHHHHHHHHHH-hCCh
Q 036661          477 EKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGRK-----GKLKEALDFVQSMP-IKSD--AGIWGTLLCACKI-HRNI  544 (615)
Q Consensus       477 ~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~p~--~~~~~~l~~~~~~-~~~~  544 (615)
                      ..|...++++.   .+.|+   -..|..++..|...     |+.++|.+.|++.. ..|+  ...+..+...++. .|+.
T Consensus       180 ~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          180 HAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            44555555555   34555   34566677777763     77777877777776 5553  4566666666666 4788


Q ss_pred             hHHHHHHHHHhccCCCC-CCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661          545 EIGEYVAYRLFELEPHS-AAPYVEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       545 ~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                      +++.+.+++++..+|+. |.  ..+    ...+...+|..+++++.
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~--~~l----an~~~q~eA~~LL~~~~  296 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPH--NKL----LVILSQKRARWLKAHVQ  296 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSS--CHH----HHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHcCCCCCCCC--hhH----HHHHHHHHHHHHHHHhH
Confidence            88888888888887774 33  122    23334456666665543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.25  E-value=0.013  Score=45.81  Aligned_cols=103  Identities=15%  Similarity=0.083  Sum_probs=69.9

Q ss_pred             CCCHHHHHHHHHHhhccCch------HHHHHHHHHHHHhhCCCCChh-HHHHHHH------HHHhcCChHHHHHHHHhCC
Q 036661          457 RPNRVTFLAVLQACTHAGFL------EKGWGYFNLMTKVYQVNPELN-HYSCMAD------LLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       457 ~p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~  523 (615)
                      +-|..+|...+....+.|+.      ++..++|+++..  .++|+.. .|...+.      .+...++.++|.++|+.+.
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34557888888877877888      888889998886  6677632 1222222      1234578888888887774


Q ss_pred             --CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          524 --IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       524 --~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                        .+.-...|...+..-.++|+...|.+++.+++.+.|..
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence              11125566666666677888888888888888887764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.22  E-value=0.32  Score=39.75  Aligned_cols=128  Identities=12%  Similarity=0.054  Sum_probs=74.1

Q ss_pred             HHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 036661          403 MYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGY  482 (615)
Q Consensus       403 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  482 (615)
                      .....|+++.|.++.+++  .+...|..|.......|+++-|.+.|++...         +..+.-.|.-.|+.+...++
T Consensus        14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence            345667777777776655  4566777777777777777777777777653         23344445555666555544


Q ss_pred             HHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHH
Q 036661          483 FNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRL  554 (615)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~  554 (615)
                      -+..... |      -++....++.-.|+++++.+++.+...-|      .........|-.+.|.++.+.+
T Consensus        83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~------eA~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLP------LAYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChH------HHHHHHHHcCcHHHHHHHHHHh
Confidence            4433321 1      13344455666777777777777655222      1112223356666666666554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.19  E-value=0.033  Score=59.80  Aligned_cols=76  Identities=11%  Similarity=-0.010  Sum_probs=37.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchH
Q 036661          398 NALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLE  477 (615)
Q Consensus       398 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~  477 (615)
                      ..++..+.+.|.++.|.++.+.     ..   .-.......|+++.|.++.+.+      .+...|..+...+.+.++++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~-----~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~  698 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPD-----QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFK  698 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCC-----HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhCCChHHheecCCC-----cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHH
Confidence            4444555555555555554421     10   1122233445555555543221      34455666666666666666


Q ss_pred             HHHHHHHHHH
Q 036661          478 KGWGYFNLMT  487 (615)
Q Consensus       478 ~a~~~~~~~~  487 (615)
                      .|.+.|.++.
T Consensus       699 ~A~~~y~~~~  708 (814)
T 3mkq_A          699 LAIEAFTNAH  708 (814)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcc
Confidence            6666665554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.016  Score=59.85  Aligned_cols=60  Identities=12%  Similarity=-0.016  Sum_probs=53.5

Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                      .+..-...|...|+++-|+++.++++..-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            344445667789999999999999999999999999999999999999999999998874

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.84  E-value=0.42  Score=39.01  Aligned_cols=129  Identities=9%  Similarity=0.033  Sum_probs=91.6

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCh
Q 036661          433 AGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKL  512 (615)
Q Consensus       433 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  512 (615)
                      ......|+++.|.++.+++      .+...|..|.......|+++-|.+.|.+...          +..+.-.|...|+.
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence            3445779999999988766      3577899999999999999999999998762          45677778888888


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHH
Q 036661          513 KEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMM  588 (615)
Q Consensus       513 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  588 (615)
                      +.-.++-+.....   .-++.....+...|+++++.+++.+.-+        +..-+-.....|--+.|.++.+.+
T Consensus        77 e~L~kla~iA~~~---g~~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           77 NKLSKMQNIAQTR---EDFGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHHHT---TCHHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHC---ccHHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence            7766555443311   2344556667788999999999877543        222223333456777777777765

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.76  E-value=2.5  Score=44.73  Aligned_cols=27  Identities=11%  Similarity=0.086  Sum_probs=21.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhHH
Q 036661          122 SWNAMIVGFAQMGFLEKVLCLFYNMRL  148 (615)
Q Consensus       122 ~~~~li~~~~~~g~~~~a~~~~~~m~~  148 (615)
                      -|..++++..+.++.+.+.++|+.+..
T Consensus       232 dy~~a~~~ai~LnD~~li~~if~~l~~  258 (963)
T 4ady_A          232 DYLTLNKVVVNLNDAGLALQLFKKLKE  258 (963)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            466677788888888888888888764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.59  E-value=0.097  Score=40.98  Aligned_cols=99  Identities=13%  Similarity=0.171  Sum_probs=67.2

Q ss_pred             CCChHHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HhhccCchHHHHHHHHHHHH
Q 036661          422 EKTVVSWTTMIAGCALNGEF------VEALDLFHQMMELDLRPNRV----TFLAVLQ---ACTHAGFLEKGWGYFNLMTK  488 (615)
Q Consensus       422 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~p~~~----~~~~l~~---~~~~~~~~~~a~~~~~~~~~  488 (615)
                      ..|..+|-..+...-+.|++      ++..++|++.... ++|+..    .|..+.-   .+...++.++|.++|+.+.+
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            35777888888887777888      7888888888875 566531    1111111   12334788888888888875


Q ss_pred             hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661          489 VYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       489 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      . .-.- ..+|-..+..-.|.|+...|.+++.+..
T Consensus        89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai  121 (161)
T 4h7y_A           89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV  121 (161)
T ss_dssp             H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence            3 2222 6667677777778888888888887765

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.44  E-value=0.019  Score=43.87  Aligned_cols=69  Identities=6%  Similarity=-0.148  Sum_probs=58.6

Q ss_pred             CCChhhHHHHHHHHHHhCChhH---HHHHHHHHhccC-C-CCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          525 KSDAGIWGTLLCACKIHRNIEI---GEYVAYRLFELE-P-HSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       525 ~p~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      .|+..+-..+++++.+.++...   ++.+++.+++.+ | ......+.|+-.+.+.|+|++|+++.+.+++..+
T Consensus        32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP  105 (126)
T 1nzn_A           32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  105 (126)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            4677788888899988776655   999999999877 5 4567889999999999999999999999987665

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.68  E-value=1.1  Score=34.41  Aligned_cols=141  Identities=10%  Similarity=0.017  Sum_probs=84.6

Q ss_pred             HhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHH
Q 036661          233 CTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSA  312 (615)
Q Consensus       233 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  312 (615)
                      +.-.|..++..++..+....   .+..-|+.++--....-   ....++..+.+-|-..|..          .+|++...
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a---~C~y~v~vLd~IGkiFDis----------~C~NlKrV   80 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESI---DCRYMFQVLDKIGSYFDLD----------KCQNLKSV   80 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHC---CHHHHHHHHHHHGGGSCGG----------GCSCTHHH
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhh---chhHHHHHHHHHhhhcCcH----------hhhcHHHH
Confidence            34467777777877777653   33344444443221111   1222333333333222221          23444444


Q ss_pred             HHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCC
Q 036661          313 RFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLK  391 (615)
Q Consensus       313 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  391 (615)
                      ...+-.+. .+....+..+.....+|.-++..+++.++.. +.+|++.....+..+|.+.|+..++.+++.+..+.|++
T Consensus        81 i~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           81 VECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            44443332 2334556677888888998988888888644 34788888888999999999999999999888887754

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.65  E-value=0.29  Score=38.01  Aligned_cols=74  Identities=11%  Similarity=0.009  Sum_probs=50.6

Q ss_pred             CCChhHHHHHHHHHHhcCChH---HHHHHHHhCC-CCC--ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH
Q 036661          493 NPELNHYSCMADLLGRKGKLK---EALDFVQSMP-IKS--DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV  566 (615)
Q Consensus       493 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  566 (615)
                      .|+..+--.++.++.+..+.+   +++.++++.. ..|  ....+..+.-++.+.|++++|+++.+.+++.+|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            456666556666776665443   4566666554 233  3346667778888999999999999999999998755433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.26  E-value=0.17  Score=39.27  Aligned_cols=70  Identities=3%  Similarity=-0.091  Sum_probs=58.1

Q ss_pred             CCChhhHHHHHHHHHHhC---ChhHHHHHHHHHhccCCC-CCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          525 KSDAGIWGTLLCACKIHR---NIEIGEYVAYRLFELEPH-SAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       525 ~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      .|+..+-..+.+++.++.   +..+++.+++.+++..|. ....++.|+-.+.+.|+|++|+++.+.+++..+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            567777778888888766   455788999999998884 4578889999999999999999999999876653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.15  E-value=0.23  Score=37.99  Aligned_cols=74  Identities=11%  Similarity=0.017  Sum_probs=47.3

Q ss_pred             CCChhHHHHHHHHHHhcCCh---HHHHHHHHhCC-CCC--ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH
Q 036661          493 NPELNHYSCMADLLGRKGKL---KEALDFVQSMP-IKS--DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV  566 (615)
Q Consensus       493 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  566 (615)
                      .|+..+--.++.++.+..+.   .+++.+++++. ..|  ....+..+.-++.+.|++++|++..+.+++.+|+|..+..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            35555555566666665544   24555555544 233  2446666777788888888888888888888888755433

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.06  E-value=7.3  Score=41.36  Aligned_cols=250  Identities=10%  Similarity=-0.066  Sum_probs=134.6

Q ss_pred             HHHhcCCHHHHHHHHhccCCC----Ccc--cHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------CCCHHHHH--HHH
Q 036661          302 MYSKCGDIDSARFLFDGMCDR----TRV--SWTAMISGYAQKGDLDEALRLFFAMEAAGE-------VPDLVTVL--SMI  366 (615)
Q Consensus       302 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~--~ll  366 (615)
                      +....|+.+++..+++.....    +..  .-..+.-+....|..+++..++.......-       .+....-.  .|-
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            455678888899999887542    211  222233345566666678887777654321       01111112  222


Q ss_pred             HhhcccchhhHHHHHHHHHHhcCCCCch--HHHHHHHHHHHhcCChHHHHHHHhcCCC-CCh--HHHHHHHHHHHhcCCh
Q 036661          367 SGCGQSGALELGKWFDNYACSGGLKDNV--MVCNALIDMYSKCGSIGDARELFYALPE-KTV--VSWTTMIAGCALNGEF  441 (615)
Q Consensus       367 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~  441 (615)
                      .++...++. .+.+.+..+.... .+..  ..-.++...+.-.|+.+....++..+.+ .+.  .-...+.-++...|+.
T Consensus       463 la~~GS~~e-ev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~  540 (963)
T 4ady_A          463 LAAMGSANI-EVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ  540 (963)
T ss_dssp             HHSTTCCCH-HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred             HHhcCCCCH-HHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence            233344443 3444444444322 1111  1222344445677787777777765433 222  2233344445577899


Q ss_pred             HHHHHHHHHHHHcCCCCCHH--HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 036661          442 VEALDLFHQMMELDLRPNRV--TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFV  519 (615)
Q Consensus       442 ~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  519 (615)
                      +.+..+++.+.... .|...  ....+.-+|+..|+.....+++..+..+  ...+..-...++-++...|+.+.+.+++
T Consensus       541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv  617 (963)
T 4ady_A          541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV  617 (963)
T ss_dssp             GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred             HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            99988888888741 23222  2234455788889988777788888753  2223333333444555677777777777


Q ss_pred             HhCCCCCChhhHHHHHHH--HHHhCCh-hHHHHHHHHHhc
Q 036661          520 QSMPIKSDAGIWGTLLCA--CKIHRNI-EIGEYVAYRLFE  556 (615)
Q Consensus       520 ~~~~~~p~~~~~~~l~~~--~~~~~~~-~~A~~~~~~~~~  556 (615)
                      +.+....++.+......+  ....|+. .++...++++..
T Consensus       618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            665533344333333333  3334443 577777777763

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.86  E-value=0.082  Score=40.45  Aligned_cols=71  Identities=3%  Similarity=-0.101  Sum_probs=58.2

Q ss_pred             CCCChhhHHHHHHHHHHhC---ChhHHHHHHHHHhccCCC-CCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          524 IKSDAGIWGTLLCACKIHR---NIEIGEYVAYRLFELEPH-SAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       524 ~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      ..|+..+--.+++++.+..   +..+++.+++.+++.+|. ....++.|+-.+.+.|+|++|+++.+.+++..+.
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~  110 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  110 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            3567777777888888766   445789999999988884 4678899999999999999999999999876543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.83  E-value=0.36  Score=38.68  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=19.2

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661          497 NHYSCMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      +.--.+..+|.+.|++++|+.+++.++
T Consensus       123 Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          123 EVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            444456777777777777777777776

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.21  E-value=0.2  Score=40.13  Aligned_cols=56  Identities=20%  Similarity=0.160  Sum_probs=29.3

Q ss_pred             HHHhhccCchHHHHHHHHHHHHhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhC
Q 036661          467 LQACTHAGFLEKGWGYFNLMTKVYQVNPEL-------NHYSCMADLLGRKGKLKEALDFVQSM  522 (615)
Q Consensus       467 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~  522 (615)
                      +..+...|.++.|+-+.+.+....+.+|+.       .++..+++++...|++..|...|++.
T Consensus        27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA   89 (167)
T 3ffl_A           27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA   89 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            444555566666665555544332333331       23444556666666666666666553

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=92.41  E-value=6.2  Score=35.82  Aligned_cols=133  Identities=10%  Similarity=-0.036  Sum_probs=80.7

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHH----HHHHHHCCCCCCHHhHHHHHHh
Q 036661          192 VCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNF----YRHMIYDGFRPDVTTVVSLLSS  267 (615)
Q Consensus       192 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~  267 (615)
                      .|.++..-|.+.+++++|.+++..-.             ..+.+.|+...+-++    ++...+.+++++..+...++..
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga-------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l  101 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQGA-------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL  101 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            34455566777888888888765433             334556666555554    4555666888888877777766


Q ss_pred             ccCchhhh-hhhHHHHHHHH----hc--CCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhc
Q 036661          268 CVCPEALV-QGRLVHSHGIH----YG--FDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQK  337 (615)
Q Consensus       268 ~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~  337 (615)
                      +......+ .-..+++.+++    .|  ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+...
T Consensus       102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~  178 (312)
T 2wpv_A          102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ  178 (312)
T ss_dssp             HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence            55432211 22334444432    22  1236778888899999999999998877533322444555555444443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.29  E-value=4  Score=39.66  Aligned_cols=187  Identities=10%  Similarity=0.065  Sum_probs=119.7

Q ss_pred             cCChhHHHHHHHHHHHC-----CCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHh-cCCCCchH--HHHHHHHHHHhcC
Q 036661          337 KGDLDEALRLFFAMEAA-----GEVPDLVTVLSMISGCGQSGALELGKWFDNYACS-GGLKDNVM--VCNALIDMYSKCG  408 (615)
Q Consensus       337 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~--~~~~l~~~~~~~g  408 (615)
                      .|+++.|++.+-.+.+.     ...........++..|...++++...+.+..+.+ +|..+...  ....++.......
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            36788888887666542     2345567788889999999999998888777665 33222211  1122233333333


Q ss_pred             ChH--HHHHHHhcCCC---C-------ChHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCCH---HHHHHHHHHhh
Q 036661          409 SIG--DARELFYALPE---K-------TVVSWTTMIAGCALNGEFVEALDLFHQMME--LDLRPNR---VTFLAVLQACT  471 (615)
Q Consensus       409 ~~~--~A~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~p~~---~~~~~l~~~~~  471 (615)
                      ..+  .-..+.+.+..   .       .......|...+...|++.+|..++.++..  .|..+..   ..+..-++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            332  23334443332   1       112346678889999999999999999864  2322222   35666678899


Q ss_pred             ccCchHHHHHHHHHHHHh-hCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661          472 HAGFLEKGWGYFNLMTKV-YQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       472 ~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                      ..+++..|..++.++... +...+.    ...+...+..+...+++.+|...|.++.
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            999999999999987532 122222    2356677888888999999988776643

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=91.36  E-value=8.5  Score=35.21  Aligned_cols=134  Identities=11%  Similarity=0.028  Sum_probs=80.7

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHH----HHHHHCCCCCCHHhHHHHHHh
Q 036661          192 VCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFY----RHMIYDGFRPDVTTVVSLLSS  267 (615)
Q Consensus       192 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~  267 (615)
                      +|.++..-|.+.+++++|.+++..-.             ..+.+.|+...+-++-    +.+.+.++++|..+...++..
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~GA-------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L  103 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILASVS-------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC  103 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHH-------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            34455666788889999888875433             3455566665555544    555667888888887777776


Q ss_pred             ccCchhhh-hhhHHHHHHH----Hhc--CCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcC
Q 036661          268 CVCPEALV-QGRLVHSHGI----HYG--FDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKG  338 (615)
Q Consensus       268 ~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~  338 (615)
                      +......+ .-..+.+.++    +.|  ..-++.....+...|.+.+++.+|+..|-.-.+++...+..++.-+...+
T Consensus       104 ~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~  181 (336)
T 3lpz_A          104 LRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD  181 (336)
T ss_dssp             HTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred             HHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            65544221 1122333333    233  23467777888888899999999888874322222345555554444433

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=91.06  E-value=2.5  Score=37.04  Aligned_cols=122  Identities=15%  Similarity=0.153  Sum_probs=76.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChh----HHHHHHHHHHhc
Q 036661          434 GCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELN----HYSCMADLLGRK  509 (615)
Q Consensus       434 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~  509 (615)
                      ...+.|+.++++.....-++.. +-|...-..++..++-.|++++|.+-++...+   +.|+..    .|..++.+    
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a----   77 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA----   77 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence            4557788899988888887763 44566677778888899999999988888773   355543    33333332    


Q ss_pred             CChHHHH-HHHHhC--C--CCCChhhHHHHHHHH--HHhCChhHHHHHHHHHhccCCCCCCChH
Q 036661          510 GKLKEAL-DFVQSM--P--IKSDAGIWGTLLCAC--KIHRNIEIGEYVAYRLFELEPHSAAPYV  566 (615)
Q Consensus       510 g~~~~A~-~~~~~~--~--~~p~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~  566 (615)
                         +... ++|..-  +  ......-...++.+.  ...|+.++|..+-.++++..|..+....
T Consensus        78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~  138 (273)
T 1zbp_A           78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  138 (273)
T ss_dssp             ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence               1121 222221  1  111222334444444  4579999999999999998887655443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.82  E-value=8.5  Score=42.77  Aligned_cols=143  Identities=8%  Similarity=0.041  Sum_probs=89.1

Q ss_pred             HHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCC--------------------
Q 036661          364 SMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEK--------------------  423 (615)
Q Consensus       364 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------  423 (615)
                      .++..+...+..+.+.++....     +.++.....+..+|...|++++|.+.|++....                    
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence            3444555556666555544322     334444456677888899999999999876431                    


Q ss_pred             ------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC
Q 036661          424 ------TVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNR----VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVN  493 (615)
Q Consensus       424 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  493 (615)
                            -..-|..++..+.+.+.++.++++-+..++....-+.    ..|..+...+...|++++|...+-.+...   .
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~  968 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P  968 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence                  0112566777777888888888887777764212121    14677778888888888888777666521   2


Q ss_pred             CChhHHHHHHHHHHhcCChHH
Q 036661          494 PELNHYSCMADLLGRKGKLKE  514 (615)
Q Consensus       494 ~~~~~~~~l~~~~~~~g~~~~  514 (615)
                      --...+..|+..++..|..+.
T Consensus       969 ~r~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          969 LKKSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             SCHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHHhCCChhh
Confidence            234556667666666655443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=90.33  E-value=12  Score=35.29  Aligned_cols=58  Identities=19%  Similarity=0.080  Sum_probs=29.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHhhccCchHHHHHHHHHHH
Q 036661          430 TMIAGCALNGEFVEALDLFHQMMEL--DLRPNR---VTFLAVLQACTHAGFLEKGWGYFNLMT  487 (615)
Q Consensus       430 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~  487 (615)
                      .++..|...|++.+|.+++.++.+.  ......   ..+..-+..|...+++.++...+....
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~  166 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR  166 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3555566666666666666655542  111111   123333445555666666666665554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.33  E-value=2.3  Score=40.44  Aligned_cols=71  Identities=7%  Similarity=0.016  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH----hhCCCCChhHH
Q 036661          428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTK----VYQVNPELNHY  499 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~  499 (615)
                      ...++..+...|++++++..++.+.... +-+...+..++.++...|+..+|++.|++..+    +.|+.|+..+-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            3446677778899999999988888763 55778899999999999999999998888654    46888887654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.06  E-value=0.51  Score=45.05  Aligned_cols=57  Identities=12%  Similarity=-0.051  Sum_probs=34.8

Q ss_pred             HHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHH
Q 036661          533 TLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMK  589 (615)
Q Consensus       533 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  589 (615)
                      .++..+...|+.+++...++.++..+|-+...|..+..+|.+.|+..+|++.|+++.
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344445556666666666666666666655566666666666666666666666553

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.36  E-value=2.6  Score=46.79  Aligned_cols=192  Identities=10%  Similarity=0.011  Sum_probs=124.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------------------
Q 036661          397 CNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRP------------------  458 (615)
Q Consensus       397 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p------------------  458 (615)
                      ...++..+...+..+.+.++..-... ++..--.+..++...|++++|...|++... |+..                  
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccc
Confidence            44566777788888888877665544 444445677889999999999999987532 1100                  


Q ss_pred             -----CHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChh
Q 036661          459 -----NRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE---LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAG  529 (615)
Q Consensus       459 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~  529 (615)
                           -..-|..++..+.+.+.++.+.++-+.+.+..+-.++   ...|..+.+.+...|++++|...+-.++ ..-...
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~  972 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKS  972 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHH
Confidence                 1123667778888889999999888887754221211   2367888999999999999999998776 333456


Q ss_pred             hHHHHHHHHHHhCChhHH------------HHHHH-HHhcc-CCCC-CCChHhHHHHHHccCChHHHHHH-HHHHHh
Q 036661          530 IWGTLLCACKIHRNIEIG------------EYVAY-RLFEL-EPHS-AAPYVEMANIYALGGRWDGVANL-RTMMKR  590 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A------------~~~~~-~~~~~-~p~~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~  590 (615)
                      .+..++...+..|..+.-            ..++. ++... ++.+ |..|..|=-.+...|++.+|..+ |+++.+
T Consensus       973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B          973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence            777777766665554443            33332 22222 3333 34455555556667776665554 666543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.23  E-value=19  Score=34.79  Aligned_cols=197  Identities=12%  Similarity=0.078  Sum_probs=113.9

Q ss_pred             CCHHHHHHHHhccC-----CC----CcccHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHhh----ccc
Q 036661          307 GDIDSARFLFDGMC-----DR----TRVSWTAMISGYAQKGDLDEALRLFFAMEAA-GEVPDLVTVLSMISGC----GQS  372 (615)
Q Consensus       307 ~~~~~a~~~~~~~~-----~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~----~~~  372 (615)
                      |+++.|.+.+-.+.     ..    .......++..|...++++...+.+.-+... |..+..  ...++..+    ...
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence            67788877665441     11    2335677888899999999888877665543 332222  23344332    222


Q ss_pred             chhhH--HHHHHHHHHh--cC-CCC---chHHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHH
Q 036661          373 GALEL--GKWFDNYACS--GG-LKD---NVMVCNALIDMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGC  435 (615)
Q Consensus       373 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~  435 (615)
                      ...+.  -..+.+.+..  .| +-.   .......|...|...|++.+|.+++.++..     .+    +..+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            22222  1111111111  11 111   234456788889999999999999887653     11    34667778888


Q ss_pred             HhcCChHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 036661          436 ALNGEFVEALDLFHQMME----LDLRPNR--VTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRK  509 (615)
Q Consensus       436 ~~~~~~~~a~~~~~~~~~----~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  509 (615)
                      ...+++..|..+++++..    ....|+.  ..+...+..+...+++.+|...|                ..+...+...
T Consensus       188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y----------------~e~~~~~~~~  251 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL----------------QEIYQTDAIK  251 (445)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH----------------HHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH----------------HHHHhccccc
Confidence            999999999999888643    2222222  23445555666677777665443                3344556666


Q ss_pred             CChHHHHHHHHh
Q 036661          510 GKLKEALDFVQS  521 (615)
Q Consensus       510 g~~~~A~~~~~~  521 (615)
                      ++.......+..
T Consensus       252 ~d~~~~~~~L~~  263 (445)
T 4b4t_P          252 SDEAKWKPVLSH  263 (445)
T ss_dssp             SCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            666555444444

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=87.70  E-value=26  Score=35.57  Aligned_cols=309  Identities=10%  Similarity=-0.006  Sum_probs=162.7

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCchhHhHHHHHHhhcCCCCChHHHHHHHHHhhcCCChhH
Q 036661           28 EAVDKNEAHKALLLFRRMKKNDIEPNNLTFPFIAKACAKLSDFLYSQMIHGHIVKSPFWSDIFVQTTMVDMYAKCDRLDC  107 (615)
Q Consensus        28 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  107 (615)
                      ...+.|++..+..+...+...-+.|- ..|..+...+ ......++...+.+-.  +.+.....-+.-+..+.+.+++..
T Consensus        15 ~a~~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~~~~w~~   90 (618)
T 1qsa_A           15 QAWDNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELARREDWRG   90 (618)
T ss_dssp             HHHHTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHhCCCHHH
Confidence            34556888877777666643211111 1232222211 1123444444443321  112223344566777888899999


Q ss_pred             HHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHH--HHHHHHHHhc
Q 036661          108 AYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLK--SVHSFGIHIG  185 (615)
Q Consensus       108 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~--~~~~~~~~~~  185 (615)
                      ....+.. ...+...-.....+....|+..+|......+-..| .........++..+...|.+....  +=++.+...|
T Consensus        91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~  168 (618)
T 1qsa_A           91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG  168 (618)
T ss_dssp             HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence            9998877 43344444456778888999888888888877766 334556666777776666543322  2222222221


Q ss_pred             -----------CCCccc-hHHHHHHHHHccCCHHHHHHHHHhcccCCCCcch---HHHHHHHHhcCCChhhHHHHHHHHH
Q 036661          186 -----------VDADVS-VCNTWISAYAKCNDLKMAELVFRGIEEGLRTVVS---WNSIIGGCTYGDKFDDSLNFYRHMI  250 (615)
Q Consensus       186 -----------~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~  250 (615)
                                 ++++.. ....++..+.   +...+.......   .++...   +...+.-+.+ .+.+.|...+....
T Consensus       169 ~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~---~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~  241 (618)
T 1qsa_A          169 NTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT---GATDFTRQMAAVAFASVAR-QDAENARLMIPSLA  241 (618)
T ss_dssp             CHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS---CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc---CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhh
Confidence                       111111 0111111111   112222222111   111111   1112222333 37789999998886


Q ss_pred             HCCCCCCHHh----HHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCc--
Q 036661          251 YDGFRPDVTT----VVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTR--  324 (615)
Q Consensus       251 ~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--  324 (615)
                      .... .+...    ...+.......+....+...+......  ..+.......+....+.|+++.|...|..+.....  
T Consensus       242 ~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~  318 (618)
T 1qsa_A          242 QAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEK  318 (618)
T ss_dssp             HHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGS
T ss_pred             hccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHcccccccc
Confidence            5432 23222    222333445555344555555554332  34444455555566678999999999999965422  


Q ss_pred             -ccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661          325 -VSWTAMISGYAQKGDLDEALRLFFAMEA  352 (615)
Q Consensus       325 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~  352 (615)
                       ...-=+.+++...|+.++|..+|..+..
T Consensus       319 ~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          319 DEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence             1223345677789999999999999874

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=87.59  E-value=3.6  Score=42.67  Aligned_cols=125  Identities=18%  Similarity=0.184  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHhcCC-hHHHHHHHhcCCCCCh--HHH--HHHHHHHHhcC-ChHHHHHHHHHHHHc------CCCCCHH--
Q 036661          396 VCNALIDMYSKCGS-IGDARELFYALPEKTV--VSW--TTMIAGCALNG-EFVEALDLFHQMMEL------DLRPNRV--  461 (615)
Q Consensus       396 ~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~--~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~p~~~--  461 (615)
                      ....++..+...++ .+.|..+|+++...++  ..+  ..++..+...+ +--+|.+++.+..+.      ...+...  
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            34455555555666 4778888887765333  222  12222222222 223466666665531      1122110  


Q ss_pred             ---------HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 036661          462 ---------TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP  523 (615)
Q Consensus       462 ---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  523 (615)
                               ....-..-|...|+++-|+++-++...   ..|+ ..+|..|+.+|...|+++.|+-.++.++
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                     111112345567888888888888874   3454 5788888899999999999988888887

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=87.56  E-value=0.48  Score=41.49  Aligned_cols=55  Identities=18%  Similarity=0.246  Sum_probs=29.6

Q ss_pred             HHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCC
Q 036661          506 LGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       506 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~  560 (615)
                      +.+.|++++|++.+..-. ..| |...-..++..++-.|++++|.+-++-..+++|+
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            445566666655554443 333 3334444555555566666666666666666655

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=87.13  E-value=4.1  Score=29.32  Aligned_cols=63  Identities=14%  Similarity=0.172  Sum_probs=44.8

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661          440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD  504 (615)
Q Consensus       440 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  504 (615)
                      |.-+..+-++.+...++-|++......+++|.+.+++..|.++++.++.+.+-.  ..+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence            344566667777777788888888888888888888888888888887653332  445655543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=85.96  E-value=24  Score=33.37  Aligned_cols=126  Identities=10%  Similarity=-0.026  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CcccHHHHHHHHHhcCC-hhHHHHHHHHHHH----CCC-CCCH
Q 036661          294 SVINTLISMYSKCGDIDSARFLFDGMCDR--------TRVSWTAMISGYAQKGD-LDEALRLFFAMEA----AGE-VPDL  359 (615)
Q Consensus       294 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~----~~~-~~~~  359 (615)
                      .....|...|.+.|+.++..+++....+-        .......++..+....+ .+.-.++..+..+    ..- -...
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999888888776321        11234455555555322 2333333333222    100 0000


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHHhc--CCCCc---hHHHHHHHHHHHhcCChHHHHHHHhc
Q 036661          360 VTVLSMISGCGQSGALELGKWFDNYACSG--GLKDN---VMVCNALIDMYSKCGSIGDARELFYA  419 (615)
Q Consensus       360 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~  419 (615)
                      ..=..+...|...|++.+|..++..+.+.  .....   ..++..-++.|...+++.++...+..
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~  164 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS  164 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            01124555566666666666666665541  11111   12333444556666666666655544

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=82.37  E-value=11  Score=26.88  Aligned_cols=86  Identities=13%  Similarity=0.024  Sum_probs=56.8

Q ss_pred             hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036661          375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL  454 (615)
Q Consensus       375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  454 (615)
                      .++|..|-+.+...+.  ...+--+-+..+...|++++|..+.+...-||...|.+|-.  .+.|-.+++..-+.++...
T Consensus        22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s   97 (115)
T 2uwj_G           22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS   97 (115)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence            3455555555544432  22222223445678899999999999999899998877654  4678888888877788877


Q ss_pred             CCCCCHHHHHH
Q 036661          455 DLRPNRVTFLA  465 (615)
Q Consensus       455 ~~~p~~~~~~~  465 (615)
                      | .|....|..
T Consensus        98 g-~p~~q~Fa~  107 (115)
T 2uwj_G           98 S-DPALADFAA  107 (115)
T ss_dssp             S-SHHHHHHHH
T ss_pred             C-CHHHHHHHH
Confidence            6 665555543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=81.67  E-value=10  Score=27.33  Aligned_cols=47  Identities=2%  Similarity=-0.148  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661          137 EKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIH  183 (615)
Q Consensus       137 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  183 (615)
                      -+..+-++.+....+.|++....+.+++|.+.+++..|.++++..+.
T Consensus        27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34455555555556677777777777777777777777777666654

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=81.61  E-value=12  Score=26.76  Aligned_cols=86  Identities=13%  Similarity=0.071  Sum_probs=55.1

Q ss_pred             hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036661          375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL  454 (615)
Q Consensus       375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  454 (615)
                      .++|..|-+.+...+.  ...+--+-+..+...|++++|..+.+...-||...|.+|-.  .+.|-.+++..-+.++...
T Consensus        23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s   98 (116)
T 2p58_C           23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS   98 (116)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence            3455555554444432  22222222345678899999999999988899988877654  3667777777777777777


Q ss_pred             CCCCCHHHHHH
Q 036661          455 DLRPNRVTFLA  465 (615)
Q Consensus       455 ~~~p~~~~~~~  465 (615)
                      | .|....|..
T Consensus        99 g-~p~~q~Fa~  108 (116)
T 2p58_C           99 Q-DPRIQTFVN  108 (116)
T ss_dssp             C-CHHHHHHHH
T ss_pred             C-CHHHHHHHH
Confidence            6 565555543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=80.50  E-value=8  Score=29.56  Aligned_cols=62  Identities=16%  Similarity=0.207  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHH
Q 036661          441 FVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMAD  504 (615)
Q Consensus       441 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  504 (615)
                      .-+..+-++.+...++-|++......+++|.+.+++..|.++|+-++.+.+  +...+|..+++
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq  130 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence            345556666677777888888888888888888888888888888876433  33445655553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	615
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 30/194 (15%), Positives = 64/194 (32%), Gaps = 10/194 (5%)

Query: 392 DNVMVCNALIDMYSKCGSIGDARELFY---ALPEKTVVSWTTMIAGCALNGEFVEALDLF 448
           +  +  + L  +++  G I  A   F     L    + ++  +         F  A+  +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY 226

Query: 449 HQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLG 507
            + + L    + V    +       G ++     +    +  ++ P   + Y  +A+ L 
Sbjct: 227 LRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYR---RAIELQPHFPDAYCNLANALK 282

Query: 508 RKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAY--RLFELEPHSAAPY 565
            KG + EA D   +               A        I E V    +  E+ P  AA +
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342

Query: 566 VEMANIYALGGRWD 579
             +A++    G+  
Sbjct: 343 SNLASVLQQQGKLQ 356

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	615
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.67
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.62
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.29
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.23
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.19
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.17
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.14
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.13
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.1
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.09
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.07
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.05
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.97
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.88
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.85
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.8
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.77
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.77
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.76
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.74
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.72
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.66
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.57
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.54
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.51
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.47
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.47
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.44
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.4
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.39
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.32
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.29
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.27
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.11
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.09
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.09
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.07
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.07
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.05
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.05
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.05
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.03
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.86
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.8
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.75
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.73
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.54
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.53
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.32
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.96
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.43
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.31
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.1
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.07
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.32
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.11
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	85.65
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	80.36

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.1e-23  Score=200.16  Aligned_cols=374  Identities=11%  Similarity=0.058  Sum_probs=264.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChh
Q 036661          162 TQAAIHAKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFD  240 (615)
Q Consensus       162 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~  240 (615)
                      ...+.+.|+++.|.+.++.+++.. +-+..++..+..+|.+.|++++|...|+++.+..| +..+|..+...+...|+++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence            344566777777777777777653 22455667777777777777777777777655434 4556667777777777777


Q ss_pred             hHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhcc-
Q 036661          241 DSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGM-  319 (615)
Q Consensus       241 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-  319 (615)
                      +|+..+......... +..                                   ............+....+....... 
T Consensus        85 ~A~~~~~~~~~~~~~-~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (388)
T d1w3ba_          85 EAIEHYRHALRLKPD-FID-----------------------------------GYINLAAALVAAGDMEGAVQAYVSAL  128 (388)
T ss_dssp             HHHHHHHHHHHHCTT-CHH-----------------------------------HHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred             ccccccccccccccc-ccc-----------------------------------cccccccccccccccccccccccccc
Confidence            777777776654321 111                                   1122222222222222222222211 


Q ss_pred             --CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHH
Q 036661          320 --CDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVC  397 (615)
Q Consensus       320 --~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  397 (615)
                        ..................+....+...+....... +.+...+..+...+...|+.+.|...++...+.. +.+...+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  206 (388)
T d1w3ba_         129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY  206 (388)
T ss_dssp             HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             ccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHH
Confidence              22233344444555556666666666666655542 3345566666667777777777777777776654 4456677


Q ss_pred             HHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 036661          398 NALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAG  474 (615)
Q Consensus       398 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  474 (615)
                      ..+...+...|++++|...++....   .+...+..+...+.+.|++++|+..+++..+.. +-+..++..+..++...|
T Consensus       207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~  285 (388)
T d1w3ba_         207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG  285 (388)
T ss_dssp             HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred             HHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            7788888888888888888876544   456678888889999999999999999998863 334578888999999999


Q ss_pred             chHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHH
Q 036661          475 FLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAY  552 (615)
Q Consensus       475 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~  552 (615)
                      ++++|.+.++....  ..+.+...+..++.++.+.|++++|++.+++.. ..| +..++..++.++...|++++|+..++
T Consensus       286 ~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  363 (388)
T d1w3ba_         286 SVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK  363 (388)
T ss_dssp             CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999885  345566788889999999999999999999876 455 45678889999999999999999999


Q ss_pred             HHhccCCCCCCChHhHHHHHHccCC
Q 036661          553 RLFELEPHSAAPYVEMANIYALGGR  577 (615)
Q Consensus       553 ~~~~~~p~~~~~~~~l~~~~~~~g~  577 (615)
                      ++++++|+++.+|..+|.+|.+.||
T Consensus       364 ~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         364 EAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999999999999998886

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-21  Score=189.36  Aligned_cols=357  Identities=14%  Similarity=0.068  Sum_probs=277.2

Q ss_pred             HHHHHHccCCHHHHHHHHHhcccCCC-CcchHHHHHHHHhcCCChhhHHHHHHHHHHCCCCCCHHhHHHHHHhccCchhh
Q 036661          196 WISAYAKCNDLKMAELVFRGIEEGLR-TVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGFRPDVTTVVSLLSSCVCPEAL  274 (615)
Q Consensus       196 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  274 (615)
                      +...+.+.|++++|.+.|+++.+..| +...+..+...+.+.|++++|+..+++.++..                     
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------------------   63 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN---------------------   63 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Confidence            45566677777777777777665544 45566666677777777777777777765532                     


Q ss_pred             hhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 036661          275 VQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMC---DRTRVSWTAMISGYAQKGDLDEALRLFFAME  351 (615)
Q Consensus       275 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  351 (615)
                                     +.+..++..+..+|.+.|++++|...+....   ..+...+..........+....+........
T Consensus        64 ---------------p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (388)
T d1w3ba_          64 ---------------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL  128 (388)
T ss_dssp             ---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred             ---------------CCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                           2344567778888899999999999988873   3334445555555666666666666666655


Q ss_pred             HCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHH
Q 036661          352 AAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPE---KTVVSW  428 (615)
Q Consensus       352 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~  428 (615)
                      .... ................+....+...+....... +.....+..+...+...|+++.|...+++...   .+...|
T Consensus       129 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  206 (388)
T d1w3ba_         129 QYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY  206 (388)
T ss_dssp             HHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccc-ccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHH
Confidence            5443 333334444455556666677777776666554 55667788889999999999999999987654   456789


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 036661          429 TTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR  508 (615)
Q Consensus       429 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  508 (615)
                      ..+...+...|++++|+..+++....+ +.+...+..+...+.+.|++++|...|+++.+.  .+-+...+..++.++..
T Consensus       207 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~  283 (388)
T d1w3ba_         207 INLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKE  283 (388)
T ss_dssp             HHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHH
T ss_pred             HHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999874 556678888899999999999999999999852  23346788899999999


Q ss_pred             cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHH
Q 036661          509 KGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRT  586 (615)
Q Consensus       509 ~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  586 (615)
                      .|++++|.+.++...  .+.+...+..++..+...|++++|+..++++++++|+++.++..+|.+|...|++++|++.++
T Consensus       284 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  363 (388)
T d1w3ba_         284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK  363 (388)
T ss_dssp             HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999876  555677888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCc
Q 036661          587 MMKRNQV  593 (615)
Q Consensus       587 ~~~~~~~  593 (615)
                      ++.+..+
T Consensus       364 ~al~l~P  370 (388)
T d1w3ba_         364 EAIRISP  370 (388)
T ss_dssp             HHHTTCT
T ss_pred             HHHHhCC
Confidence            9987654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-15  Score=142.85  Aligned_cols=241  Identities=14%  Similarity=-0.005  Sum_probs=141.1

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC
Q 036661          329 AMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG  408 (615)
Q Consensus       329 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  408 (615)
                      .....+.+.|++++|+..|+++.+.. +-+..++..+..++...|+++.|...+....+.. +.+...+..+...|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            45666778888888888888877753 3345666667777777777777777777766654 334555666666666666


Q ss_pred             ChHHHHHHHhcCCCCCh---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHH
Q 036661          409 SIGDARELFYALPEKTV---VSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNL  485 (615)
Q Consensus       409 ~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  485 (615)
                      ++++|.+.++.....++   ..+.......                    ...+.......+..+...+.+.++...+.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            66666666654332110   0000000000                    000000001111122333455566666666


Q ss_pred             HHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC
Q 036661          486 MTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA  563 (615)
Q Consensus       486 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  563 (615)
                      +.+.....++...+..++.++...|++++|...+++..  .+.+...|..++.++...|++++|++.++++++++|+++.
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  241 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR  241 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence            65432223344556666677777777777777777664  2234556666777777777777777777777777777777


Q ss_pred             ChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          564 PYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       564 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      +|..+|.+|.+.|++++|++.|++..+.
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            7777777777777777777777776653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.4e-14  Score=134.27  Aligned_cols=268  Identities=10%  Similarity=0.028  Sum_probs=197.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHhcc--CC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccch
Q 036661          298 TLISMYSKCGDIDSARFLFDGM--CD-RTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGA  374 (615)
Q Consensus       298 ~l~~~~~~~~~~~~a~~~~~~~--~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  374 (615)
                      .....+.+.|++++|...|+.+  .. .+..+|..+..++...|++++|...|.+..+.. +-+...+..+...+...|+
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence            4677788999999999999997  23 356689999999999999999999999988764 4466778888889999999


Q ss_pred             hhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 036661          375 LELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL  454 (615)
Q Consensus       375 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  454 (615)
                      ++.|.+.++.+....... ............                ..+.......+..+...+.+.+|...+++..+.
T Consensus       103 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAY-AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccch-HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            999999999987754211 111000000000                001111111222334456678888888888775


Q ss_pred             CC-CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhH
Q 036661          455 DL-RPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIW  531 (615)
Q Consensus       455 ~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~  531 (615)
                      .. .++...+..+...+...|++++|+..+++....  .+-+...|..++.+|.+.|++++|.+.++++. ..| +..++
T Consensus       166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  243 (323)
T d1fcha_         166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR  243 (323)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence            32 235677888888999999999999999998853  23346788889999999999999999999986 444 56688


Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC-----------hHhHHHHHHccCChHHHHHHH
Q 036661          532 GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP-----------YVEMANIYALGGRWDGVANLR  585 (615)
Q Consensus       532 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~~  585 (615)
                      ..++.+|...|++++|+..|+++++++|++...           |..+..++...|+.+.+....
T Consensus       244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~  308 (323)
T d1fcha_         244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD  308 (323)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999987653           345677777778777665443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2.5e-10  Score=108.03  Aligned_cols=164  Identities=13%  Similarity=0.048  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-----hh
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDL----RPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-----LN  497 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~  497 (615)
                      .+..+...+...|+++.+...+........    ......+......+...++...+...+............     ..
T Consensus       135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~  214 (366)
T d1hz4a_         135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN  214 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence            344455666667777777777766655321    112234444555566667777776666665533221111     12


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC-CCC-----ChhhHHHHHHHHHHhCChhHHHHHHHHHhc------cCCCCCCCh
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP-IKS-----DAGIWGTLLCACKIHRNIEIGEYVAYRLFE------LEPHSAAPY  565 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~  565 (615)
                      .+..++..+...|++++|...+++.. ..|     ....+..++.++...|++++|...+++++.      ..|+...++
T Consensus       215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  294 (366)
T d1hz4a_         215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL  294 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence            34445566667777777777777664 111     122344556667777777777777777653      234445567


Q ss_pred             HhHHHHHHccCChHHHHHHHHHHHh
Q 036661          566 VEMANIYALGGRWDGVANLRTMMKR  590 (615)
Q Consensus       566 ~~l~~~~~~~g~~~~A~~~~~~~~~  590 (615)
                      ..++.+|.+.|++++|.+.+++..+
T Consensus       295 ~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         295 LLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7777777777777777777776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1e-10  Score=107.73  Aligned_cols=224  Identities=11%  Similarity=0.093  Sum_probs=153.6

Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC-ChHHHHHHHhcCCC---CChHHHHHHHHHHH
Q 036661          361 TVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCG-SIGDARELFYALPE---KTVVSWTTMIAGCA  436 (615)
Q Consensus       361 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~  436 (615)
                      .++.+...+.+.+..++|...++.+++.+ |-+...|+....++...| ++++|...++.+..   .+..+|..+...+.
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            44455555666777888888888888776 566667777777777765 47888888876654   45677888888888


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCC-ChhHHHHHHHHHHhcCC----
Q 036661          437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNP-ELNHYSCMADLLGRKGK----  511 (615)
Q Consensus       437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~----  511 (615)
                      +.|++++|+..++++.+.. +-+...|..+...+...|++++|++.++++.+.   .| +...|+.++.++.+.|.    
T Consensus       124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchh
Confidence            8888888888888888763 334567888888888888888888888888742   34 35567766666666555    


Q ss_pred             --hHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCC--ChHhHHHHHHcc--CChHHHHH
Q 036661          512 --LKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAA--PYVEMANIYALG--GRWDGVAN  583 (615)
Q Consensus       512 --~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~A~~  583 (615)
                        +++|++.+.++. ..| +...|..+...+. ....+++.+.++++++++|+...  .+..++.+|...  +..+.+..
T Consensus       200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~  278 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED  278 (315)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence              467777777665 334 4556666655543 34467777888888777776443  344566666543  66677777


Q ss_pred             HHHHHHh
Q 036661          584 LRTMMKR  590 (615)
Q Consensus       584 ~~~~~~~  590 (615)
                      .+++..+
T Consensus       279 ~~~ka~~  285 (315)
T d2h6fa1         279 ILNKALE  285 (315)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=4.1e-11  Score=107.76  Aligned_cols=91  Identities=16%  Similarity=0.047  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 036661          396 VCNALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH  472 (615)
Q Consensus       396 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  472 (615)
                      ++..+..+|.+.|++++|.+.|++...   .++.+|+.+..++...|++++|+..|+++.+.. +-+..++..+..++..
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHH
Confidence            333444455555555555555554332   234455555555555555555555555555531 1122344445555555


Q ss_pred             cCchHHHHHHHHHHH
Q 036661          473 AGFLEKGWGYFNLMT  487 (615)
Q Consensus       473 ~~~~~~a~~~~~~~~  487 (615)
                      .|++++|...|++..
T Consensus       118 ~g~~~~A~~~~~~al  132 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFY  132 (259)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHH
Confidence            555555555555554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=4.4e-10  Score=103.42  Aligned_cols=226  Identities=11%  Similarity=0.032  Sum_probs=161.9

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccc-hhhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 036661          326 SWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSG-ALELGKWFDNYACSGGLKDNVMVCNALIDMY  404 (615)
Q Consensus       326 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  404 (615)
                      .++.+...+.+.+.+++|+++++++++.. +-+...|.....++...| ++++|...++...+.. +-+..+|..+...+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence            56677778888899999999999998863 344456666666666665 5899999999988876 66788888889999


Q ss_pred             HhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc------
Q 036661          405 SKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGF------  475 (615)
Q Consensus       405 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------  475 (615)
                      .+.|++++|++.++++.+   .+...|..+...+...|++++|+..++++++.+ +.+...|+.+...+.+.+.      
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~  201 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV  201 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhh
Confidence            999999999999998765   467889999999999999999999999999874 3355677766666554443      


Q ss_pred             hHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---ChhhHHHHHHHHHH--hCChhHHHH
Q 036661          476 LEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS---DAGIWGTLLCACKI--HRNIEIGEY  549 (615)
Q Consensus       476 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~--~~~~~~A~~  549 (615)
                      +++|++.+..+.+.  .+.+...|..+..++... ..+++.+.++... ..|   +...+..++..+..  .++.+.+..
T Consensus       202 ~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~  278 (315)
T d2h6fa1         202 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED  278 (315)
T ss_dssp             HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             hHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            67888888887743  233456666666665544 4566666666554 222   33344555555533  355566666


Q ss_pred             HHHHHhcc
Q 036661          550 VAYRLFEL  557 (615)
Q Consensus       550 ~~~~~~~~  557 (615)
                      .++++.++
T Consensus       279 ~~~ka~~l  286 (315)
T d2h6fa1         279 ILNKALEL  286 (315)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=3.8e-11  Score=112.41  Aligned_cols=259  Identities=8%  Similarity=-0.126  Sum_probs=177.9

Q ss_pred             CCHHHHHHHHhccC--CC-CcccHHHHHHH----------HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcc--
Q 036661          307 GDIDSARFLFDGMC--DR-TRVSWTAMISG----------YAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQ--  371 (615)
Q Consensus       307 ~~~~~a~~~~~~~~--~~-~~~~~~~ll~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--  371 (615)
                      +..++|.++++.+.  .| +...|+..-..          +...|++++|+..++...+.. +-+...+..+..++..  
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence            33466666666652  23 22234332222          233445678888888887753 3355555555444444  


Q ss_pred             cchhhHHHHHHHHHHhcCCCCchHHH-HHHHHHHHhcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHH
Q 036661          372 SGALELGKWFDNYACSGGLKDNVMVC-NALIDMYSKCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDL  447 (615)
Q Consensus       372 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~  447 (615)
                      .++.+.+...+..+.+.. +++...+ ......+...+.++.|...++.+..   .+...|+.+..++.+.|++++|...
T Consensus       122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~  200 (334)
T d1dcea1         122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence            445788888888888765 3344443 4455777788999999999998877   3567888899999999999888766


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC
Q 036661          448 FHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS  526 (615)
Q Consensus       448 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p  526 (615)
                      ++.....  .|+..   .+...+...+..+++...+.....  .-++....+..++..+...|+.++|...+.+.. ..|
T Consensus       201 ~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  273 (334)
T d1dcea1         201 GRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK  273 (334)
T ss_dssp             CSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            6655543  22221   223334455667778888777764  333445556667788888899999999998876 455


Q ss_pred             C-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc
Q 036661          527 D-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL  574 (615)
Q Consensus       527 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  574 (615)
                      + ...+..++.++...|++++|.+.++++++++|+++..|..|+..+.-
T Consensus       274 ~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         274 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence            3 45778888899999999999999999999999988888888777754

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=2.5e-10  Score=102.47  Aligned_cols=219  Identities=11%  Similarity=-0.091  Sum_probs=142.3

Q ss_pred             hhHHHHHHHHHHHCCCCC---CHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 036661          340 LDEALRLFFAMEAAGEVP---DLVTVLSMISGCGQSGALELGKWFDNYACSGGLKDNVMVCNALIDMYSKCGSIGDAREL  416 (615)
Q Consensus       340 ~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  416 (615)
                      .+.++..+++........   ...++..+...+.+.|+++.|...|+...+.. +.++.++..+..+|.+.|++++|.+.
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            445555666665442211   12355566677788888888888888888765 56778888899999999999999999


Q ss_pred             HhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCC
Q 036661          417 FYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVN  493 (615)
Q Consensus       417 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  493 (615)
                      |+++..   .+..++..+..++...|++++|...+++..+.. +.+......+..++.+.+..+.+..+......   ..
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  169 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SD  169 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SC
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cc
Confidence            988765   356688889999999999999999999998863 33444444444455556655555555555542   22


Q ss_pred             CChhHHHHHHHHHHhcCChH----HHHHHHHhCC-CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC
Q 036661          494 PELNHYSCMADLLGRKGKLK----EALDFVQSMP-IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP  564 (615)
Q Consensus       494 ~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  564 (615)
                      +....+. ++..+.......    .+...+.... ..|+ ..++..++..+...|++++|...++++++.+|++...
T Consensus       170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  245 (259)
T d1xnfa_         170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  245 (259)
T ss_dssp             CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence            2222222 223332222222    2222221111 1222 2356678888999999999999999999999986433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=3.4e-09  Score=97.38  Aligned_cols=220  Identities=11%  Similarity=0.006  Sum_probs=134.7

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccc--------------hhhHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 036661          340 LDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSG--------------ALELGKWFDNYACSGGLKDNVMVCNALIDMYS  405 (615)
Q Consensus       340 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  405 (615)
                      .+.+..+|+++... ++.++..|...+.-+...+              ..+.+..+++...+...+.+...+..++..+.
T Consensus        32 ~~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          32 TKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34566677776664 2344444444444333322              23566677777666544555666666777777


Q ss_pred             hcCChHHHHHHHhcCCC--C-C-hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HhhccCchHHHH
Q 036661          406 KCGSIGDARELFYALPE--K-T-VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQ-ACTHAGFLEKGW  480 (615)
Q Consensus       406 ~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~  480 (615)
                      +.|+++.|..+|+.+..  | + ...|...+..+.+.|+++.|.++|+++.+.+ +.+...|..... -+...|+.+.|.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHH
Confidence            77777777777776544  2 2 2356777777777777777777777777653 223333333332 233456777777


Q ss_pred             HHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC--hhhHHHHHHHHHHhCChhHHHHHHHHH
Q 036661          481 GYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP----IKSD--AGIWGTLLCACKIHRNIEIGEYVAYRL  554 (615)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~--~~~~~~l~~~~~~~~~~~~A~~~~~~~  554 (615)
                      .+|+.+.+.  .+.+...|..+++.+.+.|+++.|..+|++..    .+|+  ...|...+..-...|+.+.+..+++++
T Consensus       190 ~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         190 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777777753  23345667777777777777777777777753    2222  235666666666677777777777777


Q ss_pred             hccCCCCCC
Q 036661          555 FELEPHSAA  563 (615)
Q Consensus       555 ~~~~p~~~~  563 (615)
                      .+..|+...
T Consensus       268 ~~~~~~~~~  276 (308)
T d2onda1         268 FTAFREEYE  276 (308)
T ss_dssp             HHHTTTTTS
T ss_pred             HHHCccccc
Confidence            777776544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=9.6e-09  Score=94.25  Aligned_cols=183  Identities=5%  Similarity=-0.014  Sum_probs=137.3

Q ss_pred             ChHHHHHHHhcCCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHH
Q 036661          409 SIGDARELFYALPE----KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFN  484 (615)
Q Consensus       409 ~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  484 (615)
                      ..+.|..+|+....    .+...|...+..+...|+++.|..+++++.+.........|...+..+.+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45778888876543    35567888888888899999999999998875322234578888888888889999999999


Q ss_pred             HHHHhhCCCCChhHHHHHHHH-HHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          485 LMTKVYQVNPELNHYSCMADL-LGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       485 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                      ++.+.  .+.+...|...+.. +...|+.+.|..+|+.+.  .+.+...|..++......|+++.|+.+|+++++..|.+
T Consensus       159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            88853  23344455554543 334688899999998886  44456788888888888999999999999999877765


Q ss_pred             CC----ChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          562 AA----PYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       562 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +.    .|...+......|+.+.+.++++++.+.-.
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            44    577777777788999999999988876543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=5.8e-09  Score=98.28  Aligned_cols=286  Identities=12%  Similarity=-0.005  Sum_probs=179.2

Q ss_pred             HHHHHHhcCCHHHHHHHHhcc--CCC-C-----cccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 036661          299 LISMYSKCGDIDSARFLFDGM--CDR-T-----RVSWTAMISGYAQKGDLDEALRLFFAMEAAGE-VPD----LVTVLSM  365 (615)
Q Consensus       299 l~~~~~~~~~~~~a~~~~~~~--~~~-~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l  365 (615)
                      ....+...|++++|..++++.  ..| +     ...+..+...+...|++++|+..+++..+... .++    ...+..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            345556677777777777664  112 1     12455566677777777777777776654210 111    1234445


Q ss_pred             HHhhcccchhhHHHHHHHHHHh----cCCCC---chHHHHHHHHHHHhcCChHHHHHHHhcCCC--------CChHHHHH
Q 036661          366 ISGCGQSGALELGKWFDNYACS----GGLKD---NVMVCNALIDMYSKCGSIGDARELFYALPE--------KTVVSWTT  430 (615)
Q Consensus       366 l~~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~  430 (615)
                      ...+...|++..+...+.....    .....   ....+..+...+...|+++.+...+.....        .....+..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  177 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  177 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            5556677777777777666543    11111   123455566778888888888877765432        12345566


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC--hhHHHHH
Q 036661          431 MIAGCALNGEFVEALDLFHQMMELD--LRPN----RVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE--LNHYSCM  502 (615)
Q Consensus       431 l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l  502 (615)
                      ....+...+++..+...+.+.....  ....    ...+..+...+...|++++|...++.......-.+.  ...+..+
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  257 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  257 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            6677778888888888877765521  1111    124555566778889999999988877632111111  2345567


Q ss_pred             HHHHHhcCChHHHHHHHHhCC-------CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC---------CCh
Q 036661          503 ADLLGRKGKLKEALDFVQSMP-------IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA---------APY  565 (615)
Q Consensus       503 ~~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---------~~~  565 (615)
                      +.++...|++++|...++++.       ..|+ ...+..+...+...|++++|++.+++++++.+...         ..+
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~  337 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM  337 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence            888999999999999888764       2222 34667778889999999999999999988754321         223


Q ss_pred             HhHHHHHHccCChHHHHHH
Q 036661          566 VEMANIYALGGRWDGVANL  584 (615)
Q Consensus       566 ~~l~~~~~~~g~~~~A~~~  584 (615)
                      ..+...+...|+.+++.+.
T Consensus       338 ~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         338 AQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHhcCCChHHHHH
Confidence            3445556667777777554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=1.2e-10  Score=108.89  Aligned_cols=254  Identities=8%  Similarity=-0.109  Sum_probs=184.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HH---HHHHh-------hcccchhhHHHHHHHHHHhcCCCCchHHHH
Q 036661          330 MISGYAQKGDLDEALRLFFAMEAAGEVPDLVT-VL---SMISG-------CGQSGALELGKWFDNYACSGGLKDNVMVCN  398 (615)
Q Consensus       330 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~---~ll~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  398 (615)
                      ++......+..++|++++++..+.  .|+..+ |+   .++..       +...|.++.+..+++.+.+.. +.+...+.
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~  111 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH  111 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence            333333444458999999999875  465543 22   22222       233456788899999888765 55666666


Q ss_pred             HHHHHHHhcC--ChHHHHHHHhcCCC---CChHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 036661          399 ALIDMYSKCG--SIGDARELFYALPE---KTVVSWT-TMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTH  472 (615)
Q Consensus       399 ~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  472 (615)
                      .+..++...+  ++++|...++.+..   ++...+. .....+...+.+++|+..++.+++.+ +-+...|..+..++..
T Consensus       112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~  190 (334)
T d1dcea1         112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ  190 (334)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred             HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            6666666555  57899988887654   3455554 44567777899999999999999874 3456788888999999


Q ss_pred             cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHH
Q 036661          473 AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYV  550 (615)
Q Consensus       473 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~  550 (615)
                      .|++++|...++...+.   .|..   ..+...+...+..+++...+.+..  .++....+..++..+...|+.++|...
T Consensus       191 ~~~~~~A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  264 (334)
T d1dcea1         191 LHPQPDSGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKE  264 (334)
T ss_dssp             HSCCCCSSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHH
Confidence            99998887666655432   1221   223344566677778887777664  334455666677778888999999999


Q ss_pred             HHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          551 AYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       551 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      +.++++.+|++..++..+|.+|...|++++|.+.++++.+..+
T Consensus       265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            9999999999999999999999999999999999999987654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=8.9e-10  Score=94.36  Aligned_cols=118  Identities=7%  Similarity=-0.133  Sum_probs=71.3

Q ss_pred             CCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHH
Q 036661          458 PNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLL  535 (615)
Q Consensus       458 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~  535 (615)
                      |+...+......+.+.|++++|+..|+++...  .+.+...|..++.+|.+.|++++|+..|+++. ..| ...+|..++
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence            55555666666666667777777777666632  12334556666666666666666666666665 334 344566666


Q ss_pred             HHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCC
Q 036661          536 CACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGR  577 (615)
Q Consensus       536 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  577 (615)
                      .++...|++++|+..++++++++|++...+...+..+...++
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  121 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  121 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666655555555555444433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.3e-09  Score=81.90  Aligned_cols=89  Identities=10%  Similarity=0.076  Sum_probs=46.7

Q ss_pred             HHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHH
Q 036661          503 ADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDG  580 (615)
Q Consensus       503 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  580 (615)
                      +..+.+.|++++|+..|+++.  .+.+...|..++.++...|++++|+..++++++++|+++..|..+|.+|...|++++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence            344445555555555555543  222344455555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHhc
Q 036661          581 VANLRTMMKRN  591 (615)
Q Consensus       581 A~~~~~~~~~~  591 (615)
                      |+..+++..+.
T Consensus        90 A~~~~~~a~~~  100 (117)
T d1elwa_          90 AKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            55555555443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=6.7e-09  Score=79.26  Aligned_cols=106  Identities=11%  Similarity=0.020  Sum_probs=89.3

Q ss_pred             HHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCC
Q 036661          466 VLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRN  543 (615)
Q Consensus       466 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~  543 (615)
                      -...+.+.|++++|+..|+++.+.  -+.+...|..++.+|...|++++|+..++++.  .+.+...|..++.++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            355678889999999999998853  23445678888999999999999999998886  45567789999999999999


Q ss_pred             hhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          544 IEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       544 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      +++|+..++++++++|+++.++..+.++..
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999998888887754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.88  E-value=1.4e-09  Score=82.28  Aligned_cols=91  Identities=10%  Similarity=-0.068  Sum_probs=82.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC
Q 036661          499 YSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG  576 (615)
Q Consensus       499 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  576 (615)
                      ...++..+.+.|++++|...|+++. ..| +...|..++.++.+.|++++|+..++++++++|+++.+|..++.+|...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            3456788899999999999999987 444 57789999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHH
Q 036661          577 RWDGVANLRTMMK  589 (615)
Q Consensus       577 ~~~~A~~~~~~~~  589 (615)
                      ++++|.+.+++.+
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999864

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.4e-08  Score=85.31  Aligned_cols=128  Identities=11%  Similarity=0.026  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHH
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLL  506 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  506 (615)
                      .|+. ...+...|+++.|++.|.++    .+|+..++..+..+|...|++++|++.|++..+.  -+.....|..++.+|
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHH
Confidence            4543 56677889999999988764    2677788888899999999999999999998853  133456788899999


Q ss_pred             HhcCChHHHHHHHHhCC--CCCC----------------hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC
Q 036661          507 GRKGKLKEALDFVQSMP--IKSD----------------AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS  561 (615)
Q Consensus       507 ~~~g~~~~A~~~~~~~~--~~p~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~  561 (615)
                      .+.|++++|++.|++..  .+++                ..++..++.++...|++++|.+.+++++++.|+.
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            99999999998888763  1111                1345567778888999999999999999988873

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.4e-07  Score=79.00  Aligned_cols=148  Identities=13%  Similarity=0.044  Sum_probs=117.9

Q ss_pred             HHHHHhcCChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHH
Q 036661          401 IDMYSKCGSIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGW  480 (615)
Q Consensus       401 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  480 (615)
                      ...+...|+++.|.+.|.++..+++.+|..+..+|...|++++|++.|++.++.+ +.+...|..+..+|.+.|++++|+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~   90 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI   90 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence            4567889999999999999998999999999999999999999999999999974 445678999999999999999999


Q ss_pred             HHHHHHHHhhCCCC-------------C-hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHHhCChh
Q 036661          481 GYFNLMTKVYQVNP-------------E-LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDAGIWGTLLCACKIHRNIE  545 (615)
Q Consensus       481 ~~~~~~~~~~~~~~-------------~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~  545 (615)
                      ..|++......-.+             + ..++..++.++.+.|++++|.+.++.+. ..|+.           .++..+
T Consensus        91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~-----------~~~~~~  159 (192)
T d1hh8a_          91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------RHSKID  159 (192)
T ss_dssp             HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------GGGHHH
T ss_pred             HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----------chHHHH
Confidence            99999874211111             1 2456678899999999999999998875 45543           334556


Q ss_pred             HHHHHHHHHhccCCC
Q 036661          546 IGEYVAYRLFELEPH  560 (615)
Q Consensus       546 ~A~~~~~~~~~~~p~  560 (615)
                      .|+..+++....+|.
T Consensus       160 ~Al~~~~~~~~~~~~  174 (192)
T d1hh8a_         160 KAMECVWKQKLYEPV  174 (192)
T ss_dssp             HHHHHHHTTCCCCCC
T ss_pred             HHHHHHHhhhhCCcc
Confidence            676666666666654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.6e-08  Score=86.33  Aligned_cols=92  Identities=8%  Similarity=-0.013  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-hhHHHHHHHH
Q 036661          427 SWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-LNHYSCMADL  505 (615)
Q Consensus       427 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~  505 (615)
                      .+......+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+++.   .+.|+ ...|..++.+
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHHHHHH
Confidence            33444445555555555555555555442 2233445555555555555555555555554   22332 3344455555


Q ss_pred             HHhcCChHHHHHHHHhC
Q 036661          506 LGRKGKLKEALDFVQSM  522 (615)
Q Consensus       506 ~~~~g~~~~A~~~~~~~  522 (615)
                      |.+.|++++|+..|+++
T Consensus        82 ~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          82 QLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHH
Confidence            55555555555555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.4e-08  Score=82.60  Aligned_cols=121  Identities=7%  Similarity=-0.068  Sum_probs=99.5

Q ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 036661          462 TFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACK  539 (615)
Q Consensus       462 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~  539 (615)
                      .+......|.+.|++++|+..|+++.+.  -+-+...|..++.+|...|++++|.+.|+++.  .+.+..+|..++.++.
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            3455667889999999999999999853  23456788889999999999999999999987  4445578999999999


Q ss_pred             HhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH--ccCChHHHHHH
Q 036661          540 IHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA--LGGRWDGVANL  584 (615)
Q Consensus       540 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~  584 (615)
                      ..|++++|...++++++++|+++.++..+..+..  ..+.+++|...
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999988888776643  44556677654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=7.1e-08  Score=87.40  Aligned_cols=190  Identities=10%  Similarity=0.018  Sum_probs=130.9

Q ss_pred             HHHHHHhcCChHHHHHHHhcCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HHHHHH
Q 036661          400 LIDMYSKCGSIGDARELFYALPE-----KT----VVSWTTMIAGCALNGEFVEALDLFHQMMELDL---RPN--RVTFLA  465 (615)
Q Consensus       400 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~~~~  465 (615)
                      ....|...|++++|.+.|.+..+     .+    ..+|..+..+|.+.|++++|++.+++..+...   .+.  ..++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            45678888888888888876543     12    25788889999999999999999998765211   121  245666


Q ss_pred             HHHHhh-ccCchHHHHHHHHHHHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCh--------hhH
Q 036661          466 VLQACT-HAGFLEKGWGYFNLMTKVYQVNPE----LNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA--------GIW  531 (615)
Q Consensus       466 l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~--------~~~  531 (615)
                      +...|. ..|++++|++.+++..+-.....+    ..++..++..+...|++++|++.++++. ..|..        ..+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            666674 469999999999988643221221    3457789999999999999999998865 22211        123


Q ss_pred             HHHHHHHHHhCChhHHHHHHHHHhccCCCCCCC-----hHhHHHHHHc--cCChHHHHHHHHHHH
Q 036661          532 GTLLCACKIHRNIEIGEYVAYRLFELEPHSAAP-----YVEMANIYAL--GGRWDGVANLRTMMK  589 (615)
Q Consensus       532 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~A~~~~~~~~  589 (615)
                      ...+..+...|+++.|...++++.+++|..+..     +..++.++..  .+++++|+..|+++.
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            445556678899999999999999999875443     3445556654  356889998886554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=1.2e-07  Score=85.85  Aligned_cols=174  Identities=9%  Similarity=0.011  Sum_probs=131.8

Q ss_pred             ChHHHHHHHhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHhhccCchHHHHHHH
Q 036661          409 SIGDARELFYALPEKTVVSWTTMIAGCALNGEFVEALDLFHQMMEL----DLRPNR-VTFLAVLQACTHAGFLEKGWGYF  483 (615)
Q Consensus       409 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~  483 (615)
                      ++++|.++           |......|...+++++|.+.|.++.+.    +-+++. .+|..+..+|.+.|++++|.+.+
T Consensus        32 ~~~~Aa~~-----------y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~  100 (290)
T d1qqea_          32 KFEEAADL-----------CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (290)
T ss_dssp             HHHHHHHH-----------HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHH-----------HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            45667666           445678899999999999999998763    212222 57888899999999999999999


Q ss_pred             HHHHHhhCCCCC----hhHHHHHHHHHHh-cCChHHHHHHHHhCC----CCCC----hhhHHHHHHHHHHhCChhHHHHH
Q 036661          484 NLMTKVYQVNPE----LNHYSCMADLLGR-KGKLKEALDFVQSMP----IKSD----AGIWGTLLCACKIHRNIEIGEYV  550 (615)
Q Consensus       484 ~~~~~~~~~~~~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~A~~~  550 (615)
                      ++...-..-..+    ...+..++..|.. .|++++|.+.+++..    ...+    ..++..++..+...|++++|...
T Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~  180 (290)
T d1qqea_         101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI  180 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence            987653222222    3456677777754 699999999998874    1111    23567788999999999999999


Q ss_pred             HHHHhccCCCCCCC-------hHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          551 AYRLFELEPHSAAP-------YVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       551 ~~~~~~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ++++....|.++..       +...+.++...|+++.|.+.+++..+..+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~  230 (290)
T d1qqea_         181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP  230 (290)
T ss_dssp             HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred             HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            99999998886543       45667788889999999999998876553

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.1e-08  Score=79.77  Aligned_cols=93  Identities=15%  Similarity=0.117  Sum_probs=64.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 036661          428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLG  507 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  507 (615)
                      +......|.+.|++++|+..|++.++.+ +-+...|..+..+|...|++++|...|+++.+.  .+.+...|..++.++.
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHH
Confidence            4445566777777777777777777763 334566777777777777777777777777742  1233466777777777


Q ss_pred             hcCChHHHHHHHHhCC
Q 036661          508 RKGKLKEALDFVQSMP  523 (615)
Q Consensus       508 ~~g~~~~A~~~~~~~~  523 (615)
                      ..|++++|.+.+++..
T Consensus        90 ~~g~~~eA~~~~~~a~  105 (159)
T d1a17a_          90 ALGKFRAALRDYETVV  105 (159)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            7777777777777765

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=5.2e-08  Score=79.90  Aligned_cols=85  Identities=12%  Similarity=-0.028  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG  575 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  575 (615)
                      +|..++.+|.+.|++++|+..+++.. ..| +..++..++.++...|++++|+..++++++++|+++.+...++.+..+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            56678899999999999999999987 444 6778999999999999999999999999999999999999999998877


Q ss_pred             CChHHHH
Q 036661          576 GRWDGVA  582 (615)
Q Consensus       576 g~~~~A~  582 (615)
                      +...+..
T Consensus       144 ~~~~~~e  150 (170)
T d1p5qa1         144 RRQLARE  150 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.1e-08  Score=75.51  Aligned_cols=108  Identities=15%  Similarity=-0.051  Sum_probs=82.5

Q ss_pred             HHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC-CCCCh---hhHHHHHH
Q 036661          464 LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGK---LKEALDFVQSMP-IKSDA---GIWGTLLC  536 (615)
Q Consensus       464 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~p~~---~~~~~l~~  536 (615)
                      ..++..+...+++++|.+.|++..+.  -+.+..++..++.++.+.++   +++|+++++++. ..|.+   .++..++.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            45677777888899999999988853  24456778888888877554   456888888876 34433   36778889


Q ss_pred             HHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          537 ACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       537 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      +|.+.|++++|++.++++++++|++..+...+..+..
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            9999999999999999999999998877766655543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.57  E-value=4.1e-07  Score=74.29  Aligned_cols=93  Identities=9%  Similarity=-0.030  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG  575 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  575 (615)
                      +|..++.+|.+.|++++|+..++++.  .+.+..++..++.++...|++++|+..++++++++|+++.+...+..+....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            46678889999999999999999987  4556778889999999999999999999999999999999999999988877


Q ss_pred             CChHH-HHHHHHHHHh
Q 036661          576 GRWDG-VANLRTMMKR  590 (615)
Q Consensus       576 g~~~~-A~~~~~~~~~  590 (615)
                      +.+.+ ..+.+.+|-+
T Consensus       146 ~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         146 KEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHh
Confidence            76543 4555555544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.1e-07  Score=73.58  Aligned_cols=94  Identities=7%  Similarity=0.035  Sum_probs=77.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChH-------hHH
Q 036661          499 YSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYV-------EMA  569 (615)
Q Consensus       499 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-------~l~  569 (615)
                      +..++..+.+.|++++|++.|++..  .+.+...+..++.+|.+.|++++|+..++++++++|+++..+.       .+|
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            4457788889999999999998887  4445778888999999999999999999999999998876544       466


Q ss_pred             HHHHccCChHHHHHHHHHHHhcC
Q 036661          570 NIYALGGRWDGVANLRTMMKRNQ  592 (615)
Q Consensus       570 ~~~~~~g~~~~A~~~~~~~~~~~  592 (615)
                      .++...+++++|++.+++.....
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcC
Confidence            67788889999999998877543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.7e-07  Score=76.81  Aligned_cols=64  Identities=5%  Similarity=-0.127  Sum_probs=59.7

Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ++..++.+|.+.|++++|+..++++++++|+++.+|..+|.+|...|++++|+..|++..+..+
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P  127 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP  127 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            5666888899999999999999999999999999999999999999999999999999988654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.47  E-value=1.1e-05  Score=71.44  Aligned_cols=150  Identities=12%  Similarity=-0.002  Sum_probs=98.8

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--hhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCC
Q 036661          438 NGEFVEALDLFHQMMELDLRPNRVTFLAVLQA--CTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGK  511 (615)
Q Consensus       438 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  511 (615)
                      ..+.+.|...+++..+.|. +...........  .........+...+.....    ..+...+..|+..|..    ..+
T Consensus        87 ~~~~~~a~~~~~~a~~~g~-~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~  161 (265)
T d1ouva_          87 SQNTNKALQYYSKACDLKY-AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKD  161 (265)
T ss_dssp             CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCC
T ss_pred             chhhHHHHHHHhhhhhhhh-hhHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccc
Confidence            3566777777777777652 222111111111  1223456666666666553    2445566667777764    345


Q ss_pred             hHHHHHHHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCCCCCCChHhHHHHHHc----cCChHHHHH
Q 036661          512 LKEALDFVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL----GGRWDGVAN  583 (615)
Q Consensus       512 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~  583 (615)
                      ...+..+++......+......+...+..    ..++++|+..|+++.+..  ++..+..||.+|.+    ..++++|.+
T Consensus       162 ~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~  239 (265)
T d1ouva_         162 LKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIE  239 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred             cccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence            66677777766544456666667666655    568999999999998874  47889999999986    448999999


Q ss_pred             HHHHHHhcCcc
Q 036661          584 LRTMMKRNQVK  594 (615)
Q Consensus       584 ~~~~~~~~~~~  594 (615)
                      +|++..+.|..
T Consensus       240 ~~~kAa~~g~~  250 (265)
T d1ouva_         240 NFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHTCH
T ss_pred             HHHHHHHCcCH
Confidence            99999887753

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8.8e-08  Score=72.95  Aligned_cols=95  Identities=9%  Similarity=-0.091  Sum_probs=80.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhC---ChhHHHHHHHHHhccCCCC--CCChHhHHHHH
Q 036661          500 SCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHR---NIEIGEYVAYRLFELEPHS--AAPYVEMANIY  572 (615)
Q Consensus       500 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~  572 (615)
                      ..++..+...+++++|.+.|++..  .+.+..++..++.++.+.+   ++++|+.+++++++.+|.+  +.++..+|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            457788889999999999999987  4556778888999887644   5567999999999998764  35899999999


Q ss_pred             HccCChHHHHHHHHHHHhcCcc
Q 036661          573 ALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       573 ~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      .+.|++++|++.|+++++..+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~  104 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQ  104 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHhhhHHHHHHHHHHHHhCcC
Confidence            9999999999999999986643

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.44  E-value=5e-07  Score=72.36  Aligned_cols=76  Identities=13%  Similarity=0.037  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ++..++.+|.+.|++++|++.++++.  .+.+..+|..++.++...|++++|+..++++++++|+++.+...+..+..
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45567777777777777777777765  33355677777777777777777777777777777777766666655543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.40  E-value=5e-07  Score=72.35  Aligned_cols=65  Identities=5%  Similarity=-0.058  Sum_probs=60.4

Q ss_pred             hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          529 GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      .++..++.++.+.|++++|+..++++++++|++..+|..+|.+|...|++++|+..|++..+..+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            35667888999999999999999999999999999999999999999999999999999988664

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.39  E-value=4.8e-07  Score=74.06  Aligned_cols=86  Identities=9%  Similarity=-0.051  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-ChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHH
Q 036661          496 LNHYSCMADLLGRKGKLKEALDFVQSMP-IKS-DAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYA  573 (615)
Q Consensus       496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  573 (615)
                      ...+..++.++.+.|++++|+..++++. ..| +...|..++.++...|++++|+..++++++++|+++.++..+..++.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3456667888888888888888888876 334 45678888888888888888888888888888888888888777766


Q ss_pred             ccCChHHH
Q 036661          574 LGGRWDGV  581 (615)
Q Consensus       574 ~~g~~~~A  581 (615)
                      +.....++
T Consensus       157 ~l~~~~~~  164 (169)
T d1ihga1         157 KIKAQKDK  164 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55544443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.2e-08  Score=97.06  Aligned_cols=94  Identities=11%  Similarity=-0.048  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccC
Q 036661          497 NHYSCMADLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGG  576 (615)
Q Consensus       497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  576 (615)
                      ..+..++..+.+.|+.++|...+++........++..++..+...|++++|+..|+++++++|+++..|..||.+|...|
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~  200 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence            34445555555666666655554443300012344555556666666666666666666666666666666666666666


Q ss_pred             ChHHHHHHHHHHHh
Q 036661          577 RWDGVANLRTMMKR  590 (615)
Q Consensus       577 ~~~~A~~~~~~~~~  590 (615)
                      ++.+|+..|.+...
T Consensus       201 ~~~~A~~~y~ral~  214 (497)
T d1ya0a1         201 DHLTTIFYYCRSIA  214 (497)
T ss_dssp             CHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHh
Confidence            66666666665554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.29  E-value=6.9e-07  Score=73.08  Aligned_cols=66  Identities=6%  Similarity=-0.096  Sum_probs=60.8

Q ss_pred             hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          528 AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       528 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ...+..++.++.+.|++++|+..++++++++|+++.+|..+|.+|...|++++|++.|++..+..+
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p  142 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  142 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            346677888899999999999999999999999999999999999999999999999999988654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.27  E-value=1.9e-06  Score=70.25  Aligned_cols=64  Identities=6%  Similarity=-0.048  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      ++..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|++.|+++.+..+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P  129 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  129 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4556778889999999999999999999999999999999999999999999999999987654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.11  E-value=1.2e-05  Score=60.05  Aligned_cols=88  Identities=8%  Similarity=-0.065  Sum_probs=50.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcC
Q 036661          431 MIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKG  510 (615)
Q Consensus       431 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  510 (615)
                      +...+.+.|++++|+..+++.+... +-+...|..+..++.+.|++++|+..+++..+.  .+.+...+..++.+|...|
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCC
Confidence            4455556666666666666666642 223456666666666666666666666666532  1223455555666666666


Q ss_pred             ChHHHHHHHHh
Q 036661          511 KLKEALDFVQS  521 (615)
Q Consensus       511 ~~~~A~~~~~~  521 (615)
                      ++++|.+.+++
T Consensus        99 ~~~~A~~~l~~  109 (112)
T d1hxia_          99 NANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            66666666554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.5e-06  Score=61.49  Aligned_cols=75  Identities=9%  Similarity=0.087  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhCC--------CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhH
Q 036661          498 HYSCMADLLGRKGKLKEALDFVQSMP--------IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEM  568 (615)
Q Consensus       498 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l  568 (615)
                      .+-.++..+.+.|++++|...|+++.        ..++ ..++..++.++.+.|++++|+..++++++++|+++.++..+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            34456677777777777777776653        1112 35778899999999999999999999999999999888887


Q ss_pred             HHHH
Q 036661          569 ANIY  572 (615)
Q Consensus       569 ~~~~  572 (615)
                      +...
T Consensus        87 ~~~~   90 (95)
T d1tjca_          87 KYFE   90 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.09  E-value=6e-06  Score=67.49  Aligned_cols=121  Identities=11%  Similarity=-0.079  Sum_probs=83.2

Q ss_pred             HHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCChhhHHHHHHHHHHhC
Q 036661          464 LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKL-KEALDFVQSMPIKSDAGIWGTLLCACKIHR  542 (615)
Q Consensus       464 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~  542 (615)
                      ..........|++++|.+.|.....-   .+....-    .  ...+.+ ..-..-++.    .....+..++.++...|
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l---~rG~~l~----~--~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALRE---WRGPVLD----D--LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT---CCSSTTG----G--GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhh---Ccccccc----c--CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence            33445677788888888888888742   2211000    0  000000 000000111    12346677888999999


Q ss_pred             ChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHh-----cCcccCC
Q 036661          543 NIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKR-----NQVKKFP  597 (615)
Q Consensus       543 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~  597 (615)
                      ++++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.+     -|+.+.+
T Consensus        82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            999999999999999999999999999999999999999999999844     4666554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.07  E-value=0.0031  Score=56.29  Aligned_cols=219  Identities=9%  Similarity=0.001  Sum_probs=101.0

Q ss_pred             ChHHHHHHHHHhhcCCChhHHHHhhccCCCCCchhHHHHHHHHHhcCChHHHHHHHHHhHHcCCcCChhHHHHHHHHHHh
Q 036661           88 DIFVQTTMVDMYAKCDRLDCAYKLFDKMPDRDVASWNAMIVGFAQMGFLEKVLCLFYNMRLVGIQADFVTVMGLTQAAIH  167 (615)
Q Consensus        88 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  167 (615)
                      +..-...+...|.+.|.++.|..++..+..     |.-++..+.+.+++..|.+++...      -+..+|..+...|.+
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~   81 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD   81 (336)
T ss_dssp             ----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHh
Confidence            333334445555566666666666655432     555666666666666666655433      134456666666655


Q ss_pred             cCChhHHHHHHHHHHHhcCCCccchHHHHHHHHHccCCHHHHHHHHHhcccC-CCCcchHHHHHHHHhcCCChhhHHHHH
Q 036661          168 AKHLSLLKSVHSFGIHIGVDADVSVCNTWISAYAKCNDLKMAELVFRGIEEG-LRTVVSWNSIIGGCTYGDKFDDSLNFY  246 (615)
Q Consensus       168 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~  246 (615)
                      ......+.     +.......++.....++..|-..|.+++...+++..... ..+...++.++..|++.+ .++..+.+
T Consensus        82 ~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l  155 (336)
T d1b89a_          82 GKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHL  155 (336)
T ss_dssp             TTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             CcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence            54433321     111222234444456667777777777777777754432 445556666777666653 33333333


Q ss_pred             HHHHHCCCCCCHHhHHHHHHhccCchhhhhhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCccc
Q 036661          247 RHMIYDGFRPDVTTVVSLLSSCVCPEALVQGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVS  326 (615)
Q Consensus       247 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  326 (615)
                      ...   +-.-|   ...++..|...+-                      +..++..|.+.|+++.|..+.-.- .++...
T Consensus       156 ~~~---s~~y~---~~k~~~~c~~~~l----------------------~~elv~Ly~~~~~~~~A~~~~i~~-~~~~~~  206 (336)
T d1b89a_         156 ELF---WSRVN---IPKVLRAAEQAHL----------------------WAELVFLYDKYEEYDNAIITMMNH-PTDAWK  206 (336)
T ss_dssp             HHH---STTSC---HHHHHHHHHTTTC----------------------HHHHHHHHHHTTCHHHHHHHHHHS-TTTTCC
T ss_pred             Hhc---cccCC---HHHHHHHHHHcCC----------------------hHHHHHHHHhcCCHHHHHHHHHHc-chhhhh
Confidence            222   11111   1122233322222                      334555566666666665544222 112223


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661          327 WTAMISGYAQKGDLDEALRLFFAMEA  352 (615)
Q Consensus       327 ~~~ll~~~~~~~~~~~a~~~~~~~~~  352 (615)
                      ....+..+.+..+.+...++.....+
T Consensus       207 ~~~f~e~~~k~~N~e~~~~~i~~yL~  232 (336)
T d1b89a_         207 EGQFKDIITKVANVELYYRAIQFYLE  232 (336)
T ss_dssp             HHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHH
Confidence            34455556666666655555554443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.07  E-value=3.7e-06  Score=66.24  Aligned_cols=127  Identities=7%  Similarity=0.025  Sum_probs=69.3

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc----------hHHHHHHHHHHHHhhCCCCC-hhHHHHHH
Q 036661          435 CALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGF----------LEKGWGYFNLMTKVYQVNPE-LNHYSCMA  503 (615)
Q Consensus       435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~-~~~~~~l~  503 (615)
                      |-+.+.+++|+..++...+.. +.+...+..+..++...++          +++|+..|+++.+   +.|+ ...|..++
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG   82 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG   82 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHH
Confidence            344555667777777776652 3344556555555553322          3344444444442   1222 23344444


Q ss_pred             HHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHH
Q 036661          504 DLLGRKGKLKEALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVAN  583 (615)
Q Consensus       504 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  583 (615)
                      .+|...|+..            ++..         ...+++++|.+.|+++++++|++...+..|+...       +|.+
T Consensus        83 ~~y~~~g~~~------------~~~~---------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~  134 (145)
T d1zu2a1          83 NAYTSFAFLT------------PDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQ  134 (145)
T ss_dssp             HHHHHHHHHC------------CCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHH
T ss_pred             HHHHHcccch------------hhHH---------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHH
Confidence            4443332210            0000         0123478899999999999999877776766654       5666


Q ss_pred             HHHHHHhcCc
Q 036661          584 LRTMMKRNQV  593 (615)
Q Consensus       584 ~~~~~~~~~~  593 (615)
                      .+.++.++|+
T Consensus       135 ~~~e~~k~~~  144 (145)
T d1zu2a1         135 LHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHSSS
T ss_pred             HHHHHHHHhc
Confidence            6666666553

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.05  E-value=9.3e-07  Score=69.80  Aligned_cols=86  Identities=10%  Similarity=-0.063  Sum_probs=59.5

Q ss_pred             hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH----------HhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHcc
Q 036661          508 RKGKLKEALDFVQSMP--IKSDAGIWGTLLCACK----------IHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALG  575 (615)
Q Consensus       508 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~----------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  575 (615)
                      +.+.+++|.+.+++..  .+.+..++..++.++.          ..+.+++|+..++++++++|+++.+|..+|.+|...
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            3344455555554443  2223334444444443          234568999999999999999999999999999887


Q ss_pred             CC-----------hHHHHHHHHHHHhcCc
Q 036661          576 GR-----------WDGVANLRTMMKRNQV  593 (615)
Q Consensus       576 g~-----------~~~A~~~~~~~~~~~~  593 (615)
                      |+           +++|.+.|++..+..+
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P  117 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDEQP  117 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence            64           6889999988887654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.05  E-value=0.0011  Score=57.97  Aligned_cols=114  Identities=13%  Similarity=0.037  Sum_probs=64.9

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCC
Q 036661          440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTH----AGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGK  511 (615)
Q Consensus       440 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  511 (615)
                      ....+...+......   .+...+..|...+..    ..+...+..+++...+.    .+......++..|..    ..+
T Consensus       125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d  197 (265)
T d1ouva_         125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKN  197 (265)
T ss_dssp             CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCC
T ss_pred             hhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccc
Confidence            445555555555442   334444445554443    34455666666665532    344445556555554    457


Q ss_pred             hHHHHHHHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCCC
Q 036661          512 LKEALDFVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEPH  560 (615)
Q Consensus       512 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~  560 (615)
                      +++|..+|++....-++.....|+..|..    .+|.++|.+.++++.+..+.
T Consensus       198 ~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         198 FKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             hhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            77787777776533344555566666654    33778888888888776543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.05  E-value=0.0021  Score=57.51  Aligned_cols=39  Identities=3%  Similarity=-0.092  Sum_probs=19.5

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHH
Q 036661          437 LNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEK  478 (615)
Q Consensus       437 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~  478 (615)
                      +.++......+++...+.|   +....+.+...|...++++.
T Consensus       260 k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~  298 (336)
T d1b89a_         260 KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQA  298 (336)
T ss_dssp             HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHH
T ss_pred             hcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHH
Confidence            4445555555555544332   23455555556666665443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.03  E-value=5.6e-06  Score=66.35  Aligned_cols=63  Identities=11%  Similarity=-0.165  Sum_probs=50.3

Q ss_pred             hhHHHHHHHHHHhCChhHHHHHHHHHhccCCCC-----------CCChHhHHHHHHccCChHHHHHHHHHHHhc
Q 036661          529 GIWGTLLCACKIHRNIEIGEYVAYRLFELEPHS-----------AAPYVEMANIYALGGRWDGVANLRTMMKRN  591 (615)
Q Consensus       529 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  591 (615)
                      .+|..++.++...|++++|...+++++++.|..           ..++..+|.+|...|++++|++.|++..+.
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456677888888888888888888888765432           225788999999999999999999998764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.1e-05  Score=59.34  Aligned_cols=94  Identities=18%  Similarity=0.157  Sum_probs=53.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCC-----hhHHHHH
Q 036661          428 WTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPE-----LNHYSCM  502 (615)
Q Consensus       428 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l  502 (615)
                      +..+...+.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|+..++++.+...-.+.     ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3345566677777777777777777753 334556666777777777777777777776632111111     1233444


Q ss_pred             HHHHHhcCChHHHHHHHHhC
Q 036661          503 ADLLGRKGKLKEALDFVQSM  522 (615)
Q Consensus       503 ~~~~~~~g~~~~A~~~~~~~  522 (615)
                      +..+...+++++|++.|++.
T Consensus        86 g~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHH
Confidence            44445555555555555443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.86  E-value=1.6e-05  Score=69.39  Aligned_cols=129  Identities=12%  Similarity=0.052  Sum_probs=92.4

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCCh-hHHHHHHHHHHhcCChH
Q 036661          435 CALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPEL-NHYSCMADLLGRKGKLK  513 (615)
Q Consensus       435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~  513 (615)
                      ..+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+.   .|+. ..+..+..++...+..+
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence            346799999999999999873 445678889999999999999999999998843   5653 44555556665555555


Q ss_pred             HHHHHHHhCC--CCCC-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHh
Q 036661          514 EALDFVQSMP--IKSD-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVE  567 (615)
Q Consensus       514 ~A~~~~~~~~--~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  567 (615)
                      ++..-.....  .+|+ ...+...+..+...|+.++|...++++.+..|+.+..+..
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~  138 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND  138 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence            5444333221  2332 2333444566778899999999999999999998776654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=5.3e-06  Score=80.88  Aligned_cols=129  Identities=9%  Similarity=-0.050  Sum_probs=58.8

Q ss_pred             hcCChHHHHHHHhcCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHH
Q 036661          406 KCGSIGDARELFYALPE---KTVVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGY  482 (615)
Q Consensus       406 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  482 (615)
                      ..+.++.|...++....   ++...+..+...+.+.|+.+.|...++.....  .| ..++..+...+...|++++|...
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHH
Confidence            34555666665554433   23445556666666666666666666555432  11 23555566666666777777777


Q ss_pred             HHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHH
Q 036661          483 FNLMTKVYQVNPE-LNHYSCMADLLGRKGKLKEALDFVQSMP--IKSDAGIWGTLLCACKI  540 (615)
Q Consensus       483 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~  540 (615)
                      |+++.+   +.|+ ...|+.|+.++...|+..+|...|.+..  .+|-..++..|...+.+
T Consensus       175 y~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         175 YRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            776663   2343 3566667777777777777777666654  44455556665555443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.75  E-value=0.0001  Score=58.67  Aligned_cols=97  Identities=11%  Similarity=-0.035  Sum_probs=58.9

Q ss_pred             HhhccCchHHHHHHHHHHHHhhCCCCC----------hhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCC---
Q 036661          469 ACTHAGFLEKGWGYFNLMTKVYQVNPE----------LNHYSCMADLLGRKGKLKEALDFVQSMP--------IKSD---  527 (615)
Q Consensus       469 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~---  527 (615)
                      .+...|++++|+..|++...-..-.|+          ...|+.++.+|...|++++|.+.+++..        ..++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344445555555555555432221121          2345556666666677666666665543        1111   


Q ss_pred             --hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661          528 --AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPY  565 (615)
Q Consensus       528 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  565 (615)
                        ...+..++.++...|++++|+..|++++++.|+.....
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~  137 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET  137 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence              12456678889999999999999999999877655443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.9e-05  Score=54.96  Aligned_cols=65  Identities=8%  Similarity=-0.155  Sum_probs=55.9

Q ss_pred             hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCC-------CChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          530 IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSA-------APYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       530 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                      ....++..+.+.|++++|+..+++++++.|.++       .++..||.+|.+.|++++|++.++++++..+.
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~   78 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence            345688889999999999999999998876543       35888999999999999999999999887653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.54  E-value=0.00092  Score=54.04  Aligned_cols=74  Identities=8%  Similarity=0.043  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHH----hhCCCCChhHH
Q 036661          425 VVSWTTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTK----VYQVNPELNHY  499 (615)
Q Consensus       425 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~  499 (615)
                      ...+..+...+...|++++|+..++++.+.. +-+...|..++.+|...|+..+|++.|+++.+    ..|+.|+..+-
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            3567788889999999999999999999873 44667899999999999999999999998753    46889987653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.53  E-value=3.3e-05  Score=67.38  Aligned_cols=122  Identities=12%  Similarity=0.007  Sum_probs=88.5

Q ss_pred             hhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCh-hhHHHHHHHHHHhCChhHH
Q 036661          470 CTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKEALDFVQSMP-IKSDA-GIWGTLLCACKIHRNIEIG  547 (615)
Q Consensus       470 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~~~~~~A  547 (615)
                      ..+.|++++|+..+++..+  .-+.+...+..++.+|+..|++++|.+.++... ..|+. ..+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            4567999999999999996  334556889999999999999999999999987 55654 4555555555544444444


Q ss_pred             HHHHHHHhc-cCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          548 EYVAYRLFE-LEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       548 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      .....+... .+|++...+...+.++.+.|++++|.+.++++.+..+
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            333222222 2344445556678889999999999999999987654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.069  Score=50.15  Aligned_cols=114  Identities=5%  Similarity=-0.071  Sum_probs=67.4

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 036661          439 GEFVEALDLFHQMMELDLRPNRVTF----LAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE  514 (615)
Q Consensus       439 ~~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  514 (615)
                      .+.+.+...+....... ..+...+    ..+.......+..+.+...+......   ..+.......+....+.+++..
T Consensus       228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~  303 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG  303 (450)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred             cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHH
Confidence            56777777777776643 2222222    12223334455667777776665532   3344444445555566788888


Q ss_pred             HHHHHHhCCCCCCh--hhHHHHHHHHHHhCChhHHHHHHHHHhc
Q 036661          515 ALDFVQSMPIKSDA--GIWGTLLCACKIHRNIEIGEYVAYRLFE  556 (615)
Q Consensus       515 A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~  556 (615)
                      +...++.+...|..  ....-++.++...|+.+.|...++.+-.
T Consensus       304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            88888887733322  2223355667778888888888888764

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.96  E-value=0.027  Score=40.34  Aligned_cols=141  Identities=10%  Similarity=0.015  Sum_probs=101.6

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 036661          435 CALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGRKGKLKE  514 (615)
Q Consensus       435 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  514 (615)
                      +...|..++..+++.+....   .+..-++.++--....-+-+-..++++.+-+-|.+.|-. ....++.++.+.+.   
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~---   84 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT---   84 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC---
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhcc---
Confidence            45578888999998888873   344455555555556667777788888777654443322 23344555555443   


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHHHHHHHhcCcc
Q 036661          515 ALDFVQSMPIKSDAGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANLRTMMKRNQVK  594 (615)
Q Consensus       515 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  594 (615)
                                  +.......+.....+|.-++-.++++.+++.+.-+|+....++.+|.+.|...++.+++.++-++|++
T Consensus        85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence                        34455566677788999999999999988876667899999999999999999999999999999874

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.0019  Score=47.24  Aligned_cols=73  Identities=11%  Similarity=-0.004  Sum_probs=51.3

Q ss_pred             CCChhHHHHHHHHHHhcC---ChHHHHHHHHhCC-CCC-C-hhhHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCCh
Q 036661          493 NPELNHYSCMADLLGRKG---KLKEALDFVQSMP-IKS-D-AGIWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPY  565 (615)
Q Consensus       493 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~p-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  565 (615)
                      .|+..+--.++.++.+..   +.++++.+++++. ..| + ...+..++-+|.+.|++++|++.++++++++|++..+.
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            355556666777777664   4457888887765 333 3 24667777888888888888888888888888875543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.013  Score=42.65  Aligned_cols=68  Identities=3%  Similarity=-0.098  Sum_probs=42.5

Q ss_pred             CChhhHHHHHHHHHHhC---ChhHHHHHHHHHhccCCCCC-CChHhHHHHHHccCChHHHHHHHHHHHhcCc
Q 036661          526 SDAGIWGTLLCACKIHR---NIEIGEYVAYRLFELEPHSA-APYVEMANIYALGGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       526 p~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  593 (615)
                      |...+--.+++++.++.   +.++++.+++++++.+|.+. ..++.|+-+|.+.|+|++|+++++++++..+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP  104 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  104 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            33444455555555443   44567777777776666543 5666777777777777777777777766543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.55  Score=43.67  Aligned_cols=350  Identities=10%  Similarity=-0.047  Sum_probs=180.3

Q ss_pred             HHHHHccCCHHHHHHHHHhcccCCCCcchHHHHHHHHhcCCChhhHHHHHHHHHHCCC-CCCHHhHHHHHHhccCchhhh
Q 036661          197 ISAYAKCNDLKMAELVFRGIEEGLRTVVSWNSIIGGCTYGDKFDDSLNFYRHMIYDGF-RPDVTTVVSLLSSCVCPEALV  275 (615)
Q Consensus       197 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~  275 (615)
                      +..+.+.+++......+..   .+.+...-..+..+....|+...|...+..+-..|. .|+                  
T Consensus        79 l~~L~~~~~w~~~~~~~~~---~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~------------------  137 (450)
T d1qsaa1          79 VNELARREDWRGLLAFSPE---KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN------------------  137 (450)
T ss_dssp             HHHHHHTTCHHHHHHHCCS---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT------------------
T ss_pred             HHHHHhccCHHHHHHhccC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch------------------
Confidence            4455556666554443321   122333333455666677777777766666544432 121                  


Q ss_pred             hhhHHHHHHHHhcCCCChhHHHHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036661          276 QGRLVHSHGIHYGFDLDVSVINTLISMYSKCGDIDSARFLFDGMCDRTRVSWTAMISGYAQKGDLDEALRLFFAMEAAGE  355 (615)
Q Consensus       276 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  355 (615)
                      ....++..+.+.| ..+...+-.-+......|+...|..+...+...........+.....   ...+.....   .  .
T Consensus       138 ~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~---~--~  208 (450)
T d1qsaa1         138 ACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--T  208 (450)
T ss_dssp             HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--S
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHh---c--C
Confidence            2223333333333 33444444555566667788888888777654443334444443322   222222211   1  1


Q ss_pred             CCCHHHHHHHHHhhcc--cchhhHHHHHHHHHHhcCCCCchHH---HHHHHHHHHhcCChHHHHHHHhcCCC--CChHHH
Q 036661          356 VPDLVTVLSMISGCGQ--SGALELGKWFDNYACSGGLKDNVMV---CNALIDMYSKCGSIGDARELFYALPE--KTVVSW  428 (615)
Q Consensus       356 ~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~  428 (615)
                      .++......+..++.+  ..+.+.+..++..............   ...+.......+..+.+...+.....  .+....
T Consensus       209 ~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  288 (450)
T d1qsaa1         209 GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLI  288 (450)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHH
T ss_pred             CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHH
Confidence            2333333333333322  2355666666666655331211111   11122222344555666655543322  233333


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 036661          429 TTMIAGCALNGEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR  508 (615)
Q Consensus       429 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  508 (615)
                      .-.+......+++..+...++.|... ......-..-+.+++...|+.+.|...|..+..    .++  -|..|+..  +
T Consensus       289 ~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~  359 (450)
T d1qsaa1         289 ERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--R  359 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--H
T ss_pred             HHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--H
Confidence            33444455678888888888777542 122234445567888889999999999888763    233  34433322  2


Q ss_pred             cCChHHHHHHHHhCCCCCChh----hHHHHHHHHHHhCChhHHHHHHHHHhccCCCCCCChHhHHHHHHccCChHHHHHH
Q 036661          509 KGKLKEALDFVQSMPIKSDAG----IWGTLLCACKIHRNIEIGEYVAYRLFELEPHSAAPYVEMANIYALGGRWDGVANL  584 (615)
Q Consensus       509 ~g~~~~A~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  584 (615)
                      .|..-.. . .......+...    .-...+..+...|....|...+..+.+..  ++.-...++.+..+.|.++.|+..
T Consensus       360 Lg~~~~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a  435 (450)
T d1qsaa1         360 IGEEYEL-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQA  435 (450)
T ss_dssp             TTCCCCC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCCC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHH
Confidence            2221000 0 00001111111    11223455678899999999998887543  356777889999999999999988


Q ss_pred             HHHHH
Q 036661          585 RTMMK  589 (615)
Q Consensus       585 ~~~~~  589 (615)
                      ..+..
T Consensus       436 ~~~~~  440 (450)
T d1qsaa1         436 TIAGK  440 (450)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            77653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.07  E-value=0.016  Score=43.74  Aligned_cols=50  Identities=4%  Similarity=-0.141  Sum_probs=35.9

Q ss_pred             CChhHHHHHHHHHhccCCCCCCChHhHHHHHHc----cCChHHHHHHHHHHHhcCc
Q 036661          542 RNIEIGEYVAYRLFELEPHSAAPYVEMANIYAL----GGRWDGVANLRTMMKRNQV  593 (615)
Q Consensus       542 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  593 (615)
                      .|.++|.++++++.+..  ++.....|+.+|..    ..+.++|.+++++..+.|.
T Consensus        73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            46777777777776643  45677778887776    3578888888888777664

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.32  E-value=0.13  Score=38.44  Aligned_cols=112  Identities=13%  Similarity=0.082  Sum_probs=73.6

Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHh----cCChHH
Q 036661          439 GEFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMADLLGR----KGKLKE  514 (615)
Q Consensus       439 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~  514 (615)
                      .|+++|+++|++..+.| .|..  ...|.  .....+.++|.+++++..+. +   ++.....|...|..    ..+.++
T Consensus         7 kd~~~A~~~~~kaa~~g-~~~a--~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~   77 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN-EMFG--CLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK   77 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTH--HHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHHCC-Chhh--hhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHH
Confidence            36778888888888876 3332  22222  34456788888888887743 2   34445556666654    456788


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHH----hCChhHHHHHHHHHhccCC
Q 036661          515 ALDFVQSMPIKSDAGIWGTLLCACKI----HRNIEIGEYVAYRLFELEP  559 (615)
Q Consensus       515 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p  559 (615)
                      |.++|++....-++.....+...|..    ..|.++|..+++++.+...
T Consensus        78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            99998887633344555566666654    4588899999999887654

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.11  E-value=0.35  Score=34.57  Aligned_cols=67  Identities=10%  Similarity=0.021  Sum_probs=52.4

Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCC
Q 036661          324 RVSWTAMISGYAQKGDLDEALRLFFAMEAAGEVPDLVTVLSMISGCGQSGALELGKWFDNYACSGGLK  391 (615)
Q Consensus       324 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  391 (615)
                      ....+..+.....+|.-+...++++.+.+.+ .|++.....+..+|.+.|+..++.+++.+..+.|++
T Consensus        86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          86 NEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            3445666778888888888888888877644 788888888888999999999998888888887754

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.65  E-value=2.2  Score=28.75  Aligned_cols=62  Identities=16%  Similarity=0.216  Sum_probs=44.0

Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCchHHHHHHHHHHHHhhCCCCChhHHHHHH
Q 036661          440 EFVEALDLFHQMMELDLRPNRVTFLAVLQACTHAGFLEKGWGYFNLMTKVYQVNPELNHYSCMA  503 (615)
Q Consensus       440 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  503 (615)
                      |.-++.+-++.+...++-|++......+++|.+.+++..|.++++.++.+.+  ++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHH
Confidence            3445666667777777788888888888888888888888888888875433  2344555444

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.36  E-value=5.1  Score=26.91  Aligned_cols=47  Identities=2%  Similarity=-0.148  Sum_probs=31.5

Q ss_pred             HHHHHHHHHhHHcCCcCChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036661          137 EKVLCLFYNMRLVGIQADFVTVMGLTQAAIHAKHLSLLKSVHSFGIH  183 (615)
Q Consensus       137 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  183 (615)
                      -++.+-++.+....+.|++....+.+++|.+.+++..|.++++..+.
T Consensus        23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34455555555566777777777777777777777777777776654