Citrus Sinensis ID: 036689

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-----
Protein Sequence
MRTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGAPCWDGDLNTTIQQLHRVKLLDGSSSHSNTY
Secondary Structure (PSIPRED)
ccEEEccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEccccccEEEcccccccccccccccccEEEEcccccccccccccccccccccccEEEEccccccccccccccccccccccEEEEEEccccEEEEEEccccccccccccccccccEEEcccccccccHHHHHHcHHccccccccccccccccccccccccccHHcccccccccEEEEcccccEEEccccccccccccccccEEEEEEccccccEEcccccccccccccEEEEEccccccEEccccccccccccccccccccEEEEEccccccEEcccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEccccccccccccEEEEcccccccEEEcccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEccccccEEEccccccccccccccccccEEEEccccccccccccccccccccccEEEEEcccccEEEcccccccccccEEEEEccccccccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccHHHHHHHHHHHHHHHEEEHHccccccEEccccccccccccEEEEEEcccccEEEEccccccccHHccccccEEEEccHHHHHHHHccccccccccccEEEEEcccHccHHcccHHHHHHHHHccEEEEcccHcHEEEEEcccccccccccccccccccEEEEcccHHHHHHccccccccccccccEEEEcccccEEEEEcccccccccEEccccccEEEEcccccHHHcccccccccEEEccccEEEEEcccccHHHEccHHHHHHHHHHcEEEEcccHHHHEEEcccccccccccEEEcccccEEEEcccccccEccccccccccccccEEEEcccccEEEEccccccHHHccHHcccccccccccccHHHHcccHHHEEEccccEEEEEccccHHHHHHHccccccccccccEEccccHcHccccccccEEccccEEEEEEccccHHHEccHHHHHHHHHHcEEEEcccHHHHEEEEcccccccccEEEcccccEEEEcccHHHHHccccccccccccccEEEEEcccccEEEcccccccccccEEEEEcccccccccccccHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MRTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHlhvqnnpdfmcivdskervplddafpileslnlynLIKLERICQDrlsvqsfnELKTIRVELCDQLSNIFLLSAakclprleRIAVINCRNIqeifvvdgeydaidhqkiefgqlstlclgslpeltsFCCEVKknrqaqgmhetcsnkissledkldissplfneKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTrlilrkcpklKYIFSASMLGSFEHLQHLEIRYCKGLQEIIskegaddqvppnfvfpqvtilrlvglpelkclypgmhtsewpalklldvsacdqvtvFDSELFSfcesseedkpdipaqqplflpekvfpnleelgldgkdirmiwhgdfpqhlfggLKVLQLKFDASAAVVSSCDNLLIllpsssvsfrnlkILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLslldldsltsfcsgnyifkfpslevlfvvgcpkmnifttgelstpprvdvmyrnrgapcwdgdlntTIQQLHRVklldgssshsnty
Flexible Loop (DISEMBL)
mrtlklkfnsvsicskklqgikDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKnrqaqgmhetcsnKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKegaddqvppnFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIfttgelstpprvdVMYRNRGAPCWDGDLNTTIQQLHrvklldgssshsnty
Low Complexity Region (SEG)
MRTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVfdselfsfcesseeDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNlvassaaqslvalvKMQVFGCRAMTQVVKSEGNQLAREEIVFNklkmlslldldslTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGAPCWDGDLNTTIQQLHRVKLLDGSSSHSNTY
Disordered region (IsUnstruct)
*****LKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKK**********************DISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFC***************LFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGAPCWDGDLNTTIQQLHRVKL***********
Disordered Region (DISOPRED)
MRTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVV*************FGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA*DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELF**********PDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHG*********LKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQV************IVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTG****PPR**VMYRNRGAPCWDGDLNTTIQQL****************
Disordered Region (DISEMBL)
MRTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSF**********IPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGAPCWDGDLNTTIQQLHRVKLL**********
Disordered Region (DISPRO)
MRTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGAPCWDGDLNTTIQQLHRVKLL**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGAPCWDGDLNTTIQQLHRVKLLDGSSSHSNTY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	595	2.2.26 [Sep-21-2011]
Q42484	909	Disease resistance protei	yes	no	0.173	0.113	0.314	3e-05

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 74  DDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRL 133
           +D  P LE L L++L  L R+  + +S      ++ I +  C++L N+   S  + LP+L
Sbjct: 741 NDWLPSLEVLTLHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNV---SWVQKLPKL 797

Query: 134 ERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSF 181
           E I + +CR I+E+ + + E  +++   + F  L TL    LPEL S 
Sbjct: 798 EVIELFDCREIEEL-ISEHESPSVEDPTL-FPSLKTLRTRDLPELNSI 843

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	595
224143316	1337	cc-nbs-lrr resistance protein [Populus t	0.900	0.400	0.318	2e-62
255574526	1232	Disease resistance protein RFL1, putativ	0.842	0.406	0.336	2e-61
224111284	1340	cc-nbs-lrr resistance protein [Populus t	0.934	0.414	0.307	5e-61
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.880	0.398	0.324	1e-58
296087872	1152	unnamed protein product [Vitis vinifera]	0.806	0.416	0.319	1e-57
357439641	1261	Cc-nbs resistance protein, partial [Medi	0.793	0.374	0.318	7e-57
255563252	1603	Disease resistance protein RPS5, putativ	0.842	0.312	0.323	4e-56
356555123	1512	PREDICTED: disease resistance protein At	0.884	0.347	0.303	9e-56
357456329	1280	Cc-nbs resistance protein [Medicago trun	0.848	0.394	0.303	2e-55
224083436	758	predicted protein [Populus trichocarpa]	0.917	0.720	0.301	4e-55

>gi|224143316|ref|XP_002336027.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222838884|gb|EEE77235.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 192/603 (31%), Positives = 299/603 (49%), Gaps = 67/603 (11%)

Query: 2    RTLKLKFNSVSICSKKLQGI-KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPD 60
            RTLKLK N+V    +++  + K  E L L +   VK++L DLD EGF QLK LHVQN P 
Sbjct: 717  RTLKLKLNTVIQLEERVNTLLKITEELHLQELNGVKSILNDLDEEGFCQLKDLHVQNCPG 776

Query: 61   FMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSN 120
               I++S    P   AF  L+SL L NL  LE+IC  +L  +S   L+ ++VE C +L N
Sbjct: 777  VQYIINSMRMGP-RTAFLNLDSLFLENLDNLEKICHGQLMAESLGNLRILKVESCHRLKN 835

Query: 121  IFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS 180
            +F +S A+ + RLE I +I+C+ ++E+   + E D  D + IEF QL  L L  LP+ TS
Sbjct: 836  LFSVSIARRVVRLEEITIIDCKIMEEVVAEESENDTADGEPIEFTQLRRLTLQCLPQFTS 895

Query: 181  FCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWH 240
            F      NR+ + +     +K     ++L  S  LFN K+    LE L ++ + +EKIWH
Sbjct: 896  F----HSNRRQKLLASDVRSKEIVAGNELGTSMSLFNTKILFPKLEDLMLSSIKVEKIWH 951

Query: 241  NQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEG- 299
            +Q  V    C +NL  +++  C  L Y+ ++SM+ S   L+ LEI  CK ++EI+  EG 
Sbjct: 952  DQHAVQP-PCVKNLASIVVESCSNLNYLLTSSMVESLAQLKSLEICNCKSMEEIVVPEGI 1010

Query: 300  ADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFS 359
             + ++    +FP++ IL L+ LP+L   +   +  E  +LK+L +  C ++  F S + S
Sbjct: 1011 GEGKMMSKMLFPKLHILSLIRLPKL-TRFCTSNLLECHSLKVLTLGKCPELKEFIS-IPS 1068

Query: 360  FCESSEEDKPDIPAQQPLFLPEKVFPNLEE-LGLDGKDIRMIWHGDFPQHLFGGLKVLQL 418
              +     KPD   +  LF  +  FPNL   +  +  ++++IWH +     F  LK+L +
Sbjct: 1069 SADVPAMSKPD-NTKSALFDDKVAFPNLVVFVSFEMDNLKVIWHNELHPDSFCRLKILHV 1127

Query: 419  K--------FDASA---------AVVSSCDNLLILL------------------------ 437
                     F +S           V++ CD++  +                         
Sbjct: 1128 GHGKNLLNIFPSSMLGRFHNLENLVINDCDSVEEIFDLQALINVEQRLAVTASQLRVVRL 1187

Query: 438  -------------PSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAM 484
                         P   VSF NL  + V GC  L +L  +S AQ+L+ L ++++  C   
Sbjct: 1188 TNLPHLKHVWNRDPQGIVSFHNLCTVHVQGCLGLRSLFPASIAQNLLQLEELRIDKCGVE 1247

Query: 485  TQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNI 544
              V K EG +    E VF K+  L L +L  L  F  G +  ++P L+ L V  C K+ I
Sbjct: 1248 EIVAKDEGLEEG-PEFVFPKVTFLQLRELPELKRFYPGIHTSEWPRLKTLRVYDCEKIEI 1306

Query: 545  FTT 547
            F +
Sbjct: 1307 FPS 1309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 198/589 (33%), Positives = 305/589 (51%), Gaps = 88/589 (14%)

Query: 2    RTLKLKFNSVSICSKK-----LQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQ 56
            R LKLK N+ SI S+      L+G  D   L L  ++ V ++L++L+ EGF QLK L VQ
Sbjct: 710  RVLKLKLNT-SIHSEYEVNQFLEGTDD---LSLADARGVNSILYNLNSEGFPQLKRLIVQ 765

Query: 57   NNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCD 116
            N P+  C+V++ E VP   AFP+L+SL L NL+ LE+ C   L   SF+EL++I+V  C+
Sbjct: 766  NCPEIHCLVNASESVP-TVAFPLLKSLLLENLMNLEKFCHGELVGGSFSELRSIKVRSCN 824

Query: 117  QLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLP 176
            +L N+   S  + L +L+ + VI+CRN+ EIF  +G    I+ +     +L +L L  LP
Sbjct: 825  ELKNLLSFSMVRFLMQLQEMEVIDCRNVMEIFKYEGADSDIEDKAAALTRLRSLTLERLP 884

Query: 177  ELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIE 236
            +L SFC   +      G+ E  S      E     S PLF     +  LE L ++ +  E
Sbjct: 885  KLNSFCSIKEPLTIDPGLEEIVS------ESDYGPSVPLFQ----VPTLEDLILSSIPCE 934

Query: 237  KIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEII- 295
             IWH +L  A   C  +L  LI+  C   KY+F+ SM+ SF  L+ LEI  C+ ++ II 
Sbjct: 935  TIWHGELSTA---C-SHLKSLIVENCRDWKYLFTLSMIRSFIRLEKLEICNCEFMEGIIR 990

Query: 296  SKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDS 355
            ++E ++++     +FP++  L+L  L ++  L  G    E P+L+ L+++  +       
Sbjct: 991  TEEFSEEEGMIKLMFPRLNFLKLKNLSDVSSLRIGHGLIECPSLRHLELNRLN------- 1043

Query: 356  ELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLF-GGLK 414
                                                    D++ IW  +     F   ++
Sbjct: 1044 ----------------------------------------DLKNIWSRNIHFDPFLQNVE 1063

Query: 415  VLQLKFDASAAVVSSCDNLLIL-LPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVAL 473
            +L+++F         C+NL  L +PS+  SF+NL  LEV  C K+ NLV SS A S+V L
Sbjct: 1064 ILKVQF---------CENLTNLAMPSA--SFQNLTCLEVLHCSKVINLVTSSVATSMVQL 1112

Query: 474  VKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEV 533
            V M +  C  +T +V  E ++ A  EI+F KLK L+L+ L +LTSFC     F FPSLE 
Sbjct: 1113 VTMHIEDCDMLTGIVADEKDETAG-EIIFTKLKTLALVRLQNLTSFCLRGNTFNFPSLEE 1171

Query: 534  LFVVGCPKMNIFTTGEL--STPPRVDVMYRNRGAPCWDGDLNTTIQQLH 580
            + V  CPK+ +F+ G    S   RV + + +     W+G+LN TI+Q++
Sbjct: 1172 VTVAKCPKLRVFSPGITIASKLERVLIEFPSEDKWRWEGNLNATIEQMY 1220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111284|ref|XP_002332949.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834261|gb|EEE72738.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 196/637 (30%), Positives = 314/637 (49%), Gaps = 81/637 (12%)

Query: 2    RTLKLKFNSVSICSKKLQGI-KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPD 60
            RTLKLK N+V    + +  + K  E L L + + VK++L DLD E F +LKHLHVQN P 
Sbjct: 717  RTLKLKLNTVIQLEEWVNTLLKSTEELHLQELKGVKSILNDLDGEDFPRLKHLHVQNCPG 776

Query: 61   FMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSN 120
               I++S    P   AF  L+SL L NL  LE+IC  +L  +S  +L+ ++VE C +L N
Sbjct: 777  VQYIINSIRMGP-RTAFLNLDSLFLENLDNLEKICHGQLMAESLGKLRILKVESCHRLKN 835

Query: 121  IFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS 180
            +F +S A+ L RLE I +I+C+ ++E+   + E D  D + IEF QL  L L  LP+ TS
Sbjct: 836  LFSVSMARRLVRLEEITIIDCKIMEEVVAEESENDTADGEPIEFAQLRRLTLQCLPQFTS 895

Query: 181  FCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWH 240
            F      NR+ + +     +K     ++L  S  LFN K+   NLE L+++ + +EKIWH
Sbjct: 896  F----HSNRRQKLLASDVRSKEIVAGNELGTSMSLFNTKILFPNLEDLKLSSIKVEKIWH 951

Query: 241  NQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEG- 299
            +Q P     C +NL  +++  C  L Y+ ++SM+ S   L+ LEI  C+ ++EI+  EG 
Sbjct: 952  DQ-PAVQPPCVKNLASMVVESCSNLNYLLTSSMVESLAQLERLEICNCESMEEIVVPEGI 1010

Query: 300  ADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFS 359
             + ++    +FP++ +L L GLP+L   +   +  E  +LK+L V  C ++  F S + S
Sbjct: 1011 GEGKMMSKMLFPKLHLLELSGLPKL-TRFCTSNLLECHSLKVLMVGNCPELKEFIS-IPS 1068

Query: 360  FCESSEEDKPDIPAQQPLFLPEKV-FPNLEE-LGLDGKDIRMIWHGDFPQHLFGGLKVLQ 417
              +     KPD    +  F  +KV FP+LE  L  +  +++ IWH +     F  LK+L 
Sbjct: 1069 SADVPVMSKPD--NTKSAFFDDKVAFPDLEVFLIFEMDNLKAIWHNELHSDSFCELKILH 1126

Query: 418  LK--------FDASA---------AVVSSCD------NLLILL----------------- 437
            +         F +S           +++ CD      +L +L+                 
Sbjct: 1127 VGHGKNLLNIFPSSMLGRLHNLENLIINDCDSVEEIFDLQVLINVEQRLADTATQLRVVR 1186

Query: 438  --------------PSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRA 483
                          P   +SF NL  + V GC  L +L  +S A +L+ L ++ +  C  
Sbjct: 1187 LRNLPHLKHVWNRDPQGILSFHNLCTVHVRGCPGLRSLFPASIALNLLQLEELLIENCGV 1246

Query: 484  MTQVVKSEGNQLAREEIVFN--KLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPK 541
               V K EG +       F+  K+  L L+++  L  F  G ++ ++P L+  +V  C K
Sbjct: 1247 EEIVAKDEGLEEGPSSFRFSFPKVTYLHLVEVPELKRFYPGVHVSEWPRLKKFWVYHCKK 1306

Query: 542  MNIFTTGELSTPPRVDVMYRNRGAPCWDGDLNTTIQQ 578
            + IF       P  +   +     PCW+  ++   QQ
Sbjct: 1307 IEIF-------PSEIKCSHE----PCWEDHVDIEGQQ 1332

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 192/592 (32%), Positives = 294/592 (49%), Gaps = 68/592 (11%)

Query: 2    RTLKLKFNSVSICSKKLQGI-KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPD 60
            RTLKLK N+V    + +  + K  E L L +   VK++L DLD EGF QL+HLHVQN P 
Sbjct: 717  RTLKLKLNTVIQLEEGVNTLLKITEELHLQELNGVKSILNDLDGEGFPQLRHLHVQNCPG 776

Query: 61   FMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSN 120
               I++S    P   AF  L+SL L NL  LE+IC  +L  +S   L+ ++VE C +L N
Sbjct: 777  VQYIINSIRMGP-RTAFLNLDSLFLENLDNLEKICHGQLMAESLGNLRILKVESCHRLKN 835

Query: 121  IFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKI-EFGQLSTLCLGSLPELT 179
            +F +S A+ L RLE I +I+C+ ++E+   + E DA D + I EF QL  L L  LP+ T
Sbjct: 836  LFSVSMARRLVRLEEITIIDCKIMEEVVAEESENDAADGEPIIEFTQLRRLTLQCLPQFT 895

Query: 180  SFCCEVKKNRQAQGMHETCSNKISSLE----DKLDISSPLFNEKVALSNLEVLEMNKVNI 235
            SF   V+++  +Q   +  +++  S E    ++L  S  LFN K+   NLE L+++ + +
Sbjct: 896  SFHSNVEESSDSQRRQKLLASEARSKEIVAGNELGTSMSLFNTKILFPNLEDLKLSSIKV 955

Query: 236  EKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEII 295
            EKIWH+Q P     C +NL  + +  C  L Y+ ++SM+ S   L+ LEI  CK ++EI+
Sbjct: 956  EKIWHDQ-PSVQSPCVKNLASIAVENCRNLNYLLTSSMVESLAQLKKLEICNCKSMEEIV 1014

Query: 296  SKEG-ADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFD 354
              E   + ++    +FP++ IL L+ LP+L   +   +  E  +LK+L V  C ++  F 
Sbjct: 1015 VPEDIGEGKMMSKMLFPKLLILSLIRLPKL-TRFCTSNLLECHSLKVLTVGNCPELKEFI 1073

Query: 355  SELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKD-IRMIWHGD--------- 404
            S + S  +     KPD   +  LF  +  FP+LEE  +   D +++IWH +         
Sbjct: 1074 S-IPSSADVPAMSKPD-NTKSALFDDKVAFPDLEEFLIAEMDNLKVIWHSELHSDSFCKL 1131

Query: 405  --------------FPQHL---FGGLKVL----------------------QLKFDASAA 425
                          FP  +   F  L+ L                      +L   AS  
Sbjct: 1132 KTLHVVLVKNLLNIFPSSMLRRFHNLENLTIGACDSVEEIFDLQELINVEQRLAVTASQL 1191

Query: 426  VVSSCDNLLILL------PSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVF 479
             V    NL  L       P   +SF NL I+ V GC  L +L  +S A +L+ L +  + 
Sbjct: 1192 RVVRLTNLPHLKHVWNRDPQGILSFHNLCIVHVRGCLGLRSLFPASVALNLLQLEEFLIV 1251

Query: 480  GCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSL 531
             C     V K EG +    E +F K+  L L+++  L  F  G +  ++P L
Sbjct: 1252 NCGVEEIVAKDEGLEEG-PEFLFPKVTYLHLVEVPELKRFYPGIHTSEWPRL 1302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087872|emb|CBI35155.3| unnamed protein product [Vitis vinifera]

 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 183/573 (31%), Positives = 277/573 (48%), Gaps = 93/573 (16%)

Query: 18   LQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAF 77
            L+G KD   L L +     NV   LDREGFLQLK LHV+ +P+   I++S + +    AF
Sbjct: 561  LKGAKD---LHLRELSGAANVFPKLDREGFLQLKCLHVERSPEMQHIMNSMDPILSPCAF 617

Query: 78   PILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIA 137
            P+LESL L  LI L+ +C  +L V SF+ L+ ++VE CD L  +F +S A+ L RLE+I 
Sbjct: 618  PVLESLFLNQLINLQEVCHGQLLVGSFSYLRIVKVEYCDGLKFLFSMSMARGLSRLEKIE 677

Query: 138  VINCRNIQEIFVVDGEYDAIDH-QKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHE 196
            +  C+N+ ++ V  G+ D  D    I F +L  L L  LP+L +FC E K          
Sbjct: 678  ITRCKNMYKM-VAQGKEDGDDAVDAILFAELRYLTLQHLPKLRNFCLEGKTMPSTTKRSP 736

Query: 197  TCSNKISSL--EDKLDISSPLFNEKVALSNL-------------------------EVLE 229
            T + + + +  E +LD  + +FN+ V  S++                         EV +
Sbjct: 737  TTNVRFNGICSEGELDNQTSVFNQLVCHSSIILSNYMLKRLQSLQFLKAVDCSSLEEVFD 796

Query: 230  MNKVN--------------------IEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIF 269
            M  +N                    +++IW N+ P  + L FQNL  +++ +C  LK +F
Sbjct: 797  MEGINVKEAVAVTQLSKLILQFLPKVKQIW-NKEPRGI-LTFQNLKSVMIDQCQSLKNLF 854

Query: 270  SASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYP 329
             AS++     LQ L++  C G++ I++K+    +    FVFP+VT LRL  L +L+  YP
Sbjct: 855  PASLVRDLVQLQELQVWSC-GIEVIVAKDNG-VKTAAKFVFPKVTSLRLSHLHQLRSFYP 912

Query: 330  GMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKV-FPNLE 388
            G HTS+WP LK L V  C +V +F  E  +F +       D+   QPLFL ++V FPNLE
Sbjct: 913  GAHTSQWPLLKELKVHECPEVDLFAFETPTFQQIHHMGNLDMLIHQPLFLVQQVAFPNLE 972

Query: 389  ELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLK 448
            EL LD  +   IW   FP + F  L+VL          V    ++L+++PS  +      
Sbjct: 973  ELTLDYNNATEIWQEQFPVNSFCRLRVLN---------VCEYGDILVVIPSFML------ 1017

Query: 449  ILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKML 508
                               Q L  L K+ V  C ++ ++ + EG+    +  +  +L+ +
Sbjct: 1018 -------------------QRLHNLEKLNVKRCSSVKEIFQLEGHDEENQAKMLGRLREI 1058

Query: 509  SLLDLDSLTSFCSGNYI--FKFPSLEVLFVVGC 539
             L DL  LT     N        SLE L V  C
Sbjct: 1059 WLRDLPGLTHLWKENSKPGLDLQSLESLEVWNC 1091

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357439641|ref|XP_003590098.1| Cc-nbs resistance protein, partial [Medicago truncatula] gi|355479146|gb|AES60349.1| Cc-nbs resistance protein, partial [Medicago truncatula]

 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 173/543 (31%), Positives = 268/543 (49%), Gaps = 71/543 (13%)

Query: 21   IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80
            +K VE L LD+   ++NVL+ L+  GF  LKHLH+QNN +   IVDSKER     +FPIL
Sbjct: 725  VKGVENLYLDEVDGIQNVLYQLNGVGFPLLKHLHIQNNVNMKHIVDSKERNQFHVSFPIL 784

Query: 81   ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN 140
            E+L L+NL  LE IC   L + SF  L  I+V+ C QL  +F  + AK L  L  I V +
Sbjct: 785  ETLVLHNLKNLEHICDGPLLITSFENLSAIKVKKCSQLKYLFSFTMAKGLSHLSNIEVCD 844

Query: 141  CRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSN 200
            C +++EI + D    A + +KIEF QL +L L  L  L +F             H     
Sbjct: 845  CNSMKEIVLKDNNLSANNDEKIEFLQLRSLTLEHLETLDNFF-------SYYLTHSGNMQ 897

Query: 201  KISSLEDKLDISSPLFNEKVALSNLEVLEMNKV-NIEKIWHNQLPVAMFLCFQNLTRLIL 259
            K   LE    +S+P F  +VA  NLE L+++ + N+ KIW +    +M+    NLT LI+
Sbjct: 898  KYQGLEPY--VSTPFFGAQVAFCNLETLKLSSLRNLNKIWDDS-HYSMY----NLTTLIV 950

Query: 260  RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLV 319
             KC  LKY+FS++++GSF++LQHLEI  C  ++EII+KE   D +  +  F    I+ L 
Sbjct: 951  EKCGALKYLFSSTVVGSFKNLQHLEISNCPLMEEIIAKEEISDALKEDNFFKLEKII-LK 1009

Query: 320  GLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFL 379
             +  LK ++      ++  +K+L+V+ C Q+ V                           
Sbjct: 1010 DMDNLKTIW----YRQFETVKMLEVNNCKQIVV--------------------------- 1038

Query: 380  PEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCD-------- 431
               VFP+  +   +  +I ++ +  F + +F      +L F+ + +V  +          
Sbjct: 1039 ---VFPSSMQKTYNMLEILVVTNCAFVEEIF------ELTFNGNTSVEDTSQLKEFTIGE 1089

Query: 432  -----NLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQ 486
                  +    P    +F NL  +E++ C +L  L+  S A     L ++ +  C +M +
Sbjct: 1090 LPKLKKIWSRDPQGIPNFGNLIHVELNNCSRLEYLLPLSIATRCSHLKELGIKNCASMKE 1149

Query: 487  VV--KSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNI 544
            +V  + E +  A     FNKL  L   +L  L  F +GNY    PSL  + V  C K+N+
Sbjct: 1150 IVAKEKENSVFADPIFEFNKLSRLMFYNLGKLKGFYAGNYTLVCPSLRDIHVFNCAKLNV 1209

Query: 545  FTT 547
            + T
Sbjct: 1210 YRT 1212

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 183/565 (32%), Positives = 290/565 (51%), Gaps = 64/565 (11%)

Query: 2    RTLKLKFNSVSICSKKLQGI--KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNP 59
            RTLKLK N+ SI  +    I  +  E L L + + +K+VL+DLD +GF QLKHL VQN+P
Sbjct: 722  RTLKLKLNTSSIHLEHGLSILLEVTEDLYLAEVKGIKSVLYDLDSQGFTQLKHLDVQNDP 781

Query: 60   DFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLS 119
            +   I+D   R P + AFPILESL L NL+ LE+IC  +L+  SF++L+++ V  CD+L 
Sbjct: 782  EIQYIIDPNRRSPCN-AFPILESLYLDNLMSLEKICCGKLTTGSFSKLRSLTVVKCDRLK 840

Query: 120  NIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT 179
            N+F  S  +CL +L+++ V++C N++EI     E    D++ ++  QL +L L  LP   
Sbjct: 841  NLFSFSMMRCLLQLQQMKVVDCANLEEIVACGSEDTDNDYEAVKLTQLCSLTLKRLPMFK 900

Query: 180  SFCCEVKKNR-----QAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVN 234
            SFC + K +      Q Q   +T   +I+  + +L    PLFNE     NLE LE++ + 
Sbjct: 901  SFCSKKKVSPISLRVQKQLTTDTGLKEIAP-KGELGDPLPLFNEMFCFPNLENLELSSIA 959

Query: 235  IEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEI 294
             EKI  +QL         NL  LI+ +C  LKY+F++S++ +   L+ LE+  C  ++ I
Sbjct: 960  CEKICDDQLSAIS----SNLMSLIVERCWNLKYLFTSSLVKNLLLLKRLEVFDCMSVEGI 1015

Query: 295  I-SKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVF 353
            I ++E  +++     +FP++  L+L  LP +     G +  E+ +L+ L +  C  + +F
Sbjct: 1016 IVAEELVEEERNRKKLFPELDFLKLKNLPHITRFCDG-YPVEFSSLRKLLIENCPALNMF 1074

Query: 354  DSELFS--FCESSE-----EDKPDIPAQQPLFLPEKVFPNLEELGLDGKD-IRMIWHGDF 405
             S+  S    ES E      +K      QPLF  +  FP+LEE+ L   D +R IWH   
Sbjct: 1075 VSKSPSADMIESREAKGMNSEKNHHTETQPLFNEKVAFPSLEEIELSYIDNLRRIWHN-- 1132

Query: 406  PQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASS 465
                         + DA                    SF  LKI+ ++GCKKL  +  S 
Sbjct: 1133 -------------QLDAG-------------------SFCKLKIMRINGCKKLRTIFPSY 1160

Query: 466  AAQSLVALVKMQVFGCRAMTQVVKSEG-NQLAREEIVFNKLKMLSLLDLDSLTSFCS--- 521
              +    L K+ +  C A+ ++ + +G N   +  +  + L+ L +  L  L S  S   
Sbjct: 1161 LLERFQCLEKLSLSDCYALEEIYELQGLNFKEKHLLATSGLRELYIRSLPQLKSILSKDP 1220

Query: 522  -GNYIFKFPSLEVLFVVGCPKMNIF 545
             GN  F F +L ++ +  C   N+F
Sbjct: 1221 QGN--FTFLNLRLVDISYCSMKNLF 1243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555123|ref|XP_003545887.1| PREDICTED: disease resistance protein At4g27190-like [Glycine max]

 Score =  224 bits (571), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 180/593 (30%), Positives = 278/593 (46%), Gaps = 67/593 (11%)

Query: 2    RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDF 61
            RTLKL  +S +     +  +  VE L L + + VK++L+DLD EGF QLKHLH+  + + 
Sbjct: 700  RTLKLTGSSWT----SISSLTTVEDLRLAELKGVKDLLYDLDVEGFPQLKHLHIHGSDEL 755

Query: 62   MCIVDSKE-RVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSN 120
            + I++S+  R P   AFP L+SL LYNL  +E IC   +   SF +L+ I+V  C  L N
Sbjct: 756  LHIINSRRLRNPHSSAFPNLKSLLLYNLYTMEEICHGPIPTLSFAKLEVIKVRNCHGLDN 815

Query: 121  IFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS 180
            + L S A+ L +L  + + NCR ++EI  ++   D  +  +I   +L +L L  L  L S
Sbjct: 816  LLLYSLARNLSQLHEMEINNCRCMKEIIAMEEHEDEKELLEIVLPELRSLALVELTRLQS 875

Query: 181  FCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWH 240
            FC  +  +     +                I   LFN++V    LE L++  ++I KIW 
Sbjct: 876  FCLPLTVDMGDPSIQ--------------GIPLALFNQQVVTPKLETLKLYDMDICKIWD 921

Query: 241  NQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA 300
            ++LP  +  CFQNLT LI+ +C  L  +F++ M      LQ+L I +C+ L+ I  +E  
Sbjct: 922  DKLP--LHSCFQNLTHLIVVRCNSLTSLFASWMGRGLVKLQYLNIYWCQMLKAIFVQE-- 977

Query: 301  DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSF 360
             DQ      FP    + +  + + K + P           L       ++ ++D E   F
Sbjct: 978  -DQ------FPNSETVEISIMNDWKSIRPNQEPPNSFHHNL-------KINIYDCESMDF 1023

Query: 361  CESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKF 420
                       P      L +  F  +   G+     +     D   H++          
Sbjct: 1024 V---------FPVSAAKELRQHQFLEIRSCGIKNIFEKSDITCDM-THVY---------- 1063

Query: 421  DASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFG 480
                  V  C  +  ++P S V F+ L  L VS C  L N++  S   SL  L  +++  
Sbjct: 1064 -LEKITVEKCPGMKTIIP-SFVLFQCLDKLIVSSCHTLVNIIRPSTTTSLPNLRILRISE 1121

Query: 481  CRAMTQVVKS--EGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVG 538
            C  + ++  S  E +     EI F KL+ L+L  L  LTSFC G+Y F+FPSL+++ +  
Sbjct: 1122 CDELEEIYGSNNESDDAPLGEIAFRKLEELTLKYLPRLTSFCQGSYDFRFPSLQIVIIEE 1181

Query: 539  CPKMNIFTTGELSTPPRVDVMYR------NRGAPCWDGDLNTTIQQLHRVKLL 585
            CP M+ F  G ++TP    V YR       R    W GDLNTT++     K L
Sbjct: 1182 CPVMDTFCQGNITTPSLTKVEYRLSRDNWYRIEDHWYGDLNTTVRTAFTKKYL 1234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456329|ref|XP_003598445.1| Cc-nbs resistance protein [Medicago truncatula] gi|355487493|gb|AES68696.1| Cc-nbs resistance protein [Medicago truncatula]

 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 175/576 (30%), Positives = 278/576 (48%), Gaps = 71/576 (12%)

Query: 24   VEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESL 83
             E L L + + VK VL++L+ EGF QLKHL+++   +   I+        D AFP LESL
Sbjct: 744  AEDLYLAELKGVKEVLYELNDEGFSQLKHLNIKTCDEMESIIGPTIWSVHDHAFPNLESL 803

Query: 84   NLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRN 143
             + N++KLERIC D L  ++F +L+ I+V+ CD + ++FL S  + L  L  I +  CR 
Sbjct: 804  IIQNMMKLERICSDPLPAEAFAKLQVIKVKNCDLMESVFLHSMVQHLTELVEIEISECRY 863

Query: 144  IQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKIS 203
            +  I     + +  +  KI   +L +L L SLP L S               E+C NK S
Sbjct: 864  MNYIIAKKIQENEGEDDKIALPKLRSLTLESLPSLVSLS------------PESC-NKDS 910

Query: 204  SLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCP 263
              E+  D SS L N+KV   +LE L++  +N+++IW ++L      CFQNLT L +  C 
Sbjct: 911  --ENNNDFSSQLLNDKVEFPSLETLKLYSINVQRIWDDKLSANS--CFQNLTNLTVDGCE 966

Query: 264  KLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD------------DQVPPNFVFP 311
             LK++FS S+      LQHL I  CK + +I  +E               + VP   +FP
Sbjct: 967  SLKHLFSFSVAEKLVKLQHLLISSCKLVDKIFVREETTHHHLHIRKSHPVEMVP---IFP 1023

Query: 312  QVTILRLVGLPELKCLYPG-MHTSEWPALKLLDVSACDQV-TVFDSELFSFCESSEEDKP 369
             +  L +  +  LK ++P  +  + +  LK L++ +CDQ+ +VF S + +          
Sbjct: 1024 NLETLVISHMDNLKSIWPNQLIQTSFCKLKKLEIISCDQLLSVFPSHVLN---------- 1073

Query: 370  DIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLF--GGLKVLQLKFDASAAVV 427
                            N+E L L        WH    + ++   G+   +L+       +
Sbjct: 1074 -------------KLQNIESLNL--------WHCLAVKVIYEVNGISEEELEIPLRNLSL 1112

Query: 428  SSCDNLLILL---PSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAM 484
                NL  L    P   + F+NL +++ + C+ L ++   S A+ L+ L  +++  C   
Sbjct: 1113 GHLPNLKYLWNKDPQGKIKFQNLSMVKATKCESLNHVFPFSVAKDLLQLQVLEISDCGVE 1172

Query: 485  TQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNI 544
              + K +G       +VF++L  L  L+L  L  FCSGN+ F+FP L  L+VV CP M  
Sbjct: 1173 EIIAKDQGEVEEDLGLVFSRLVTLKFLNLQELRCFCSGNHNFRFPLLNKLYVVECPAMET 1232

Query: 545  FTTGELSTPPRVDVMYRNRGAPCW-DGDLNTTIQQL 579
            F+ G L       +     G  C+ + DLNTTI+ +
Sbjct: 1233 FSHGILRASILRRICLNENGDQCYLEADLNTTIRNI 1268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083436|ref|XP_002307026.1| predicted protein [Populus trichocarpa] gi|222856475|gb|EEE94022.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 198/657 (30%), Positives = 305/657 (46%), Gaps = 111/657 (16%)

Query: 1   MRTLKLKFNSVS--ICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNN 58
           +RTLKLK N+ +  +    L  +K  + L L + + V NV+ ++D EGFLQL+HLH+ N+
Sbjct: 121 LRTLKLKLNTSANHLEHGVLMLLKRTQDLYLLELKGVNNVVSEMDTEGFLQLRHLHLHNS 180

Query: 59  PDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQL 118
            D   I+++   VP    FP+LESL LYNL+ LE++C   L+ +SF +L  I V  C +L
Sbjct: 181 SDIQYIINTSSEVP-SHVFPVLESLFLYNLVSLEKLCHGILTAESFRKLTIIEVGNCVKL 239

Query: 119 SNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKI---EFGQLSTLCLGSL 175
            ++F  S A+ L +L+ I + +C  ++EI   +G+     H  I   EF QLS+L L  L
Sbjct: 240 KHLFPFSIARGLSQLQTINISSCLTMEEIVAEEGDEFEDSHTAIDVMEFNQLSSLSLRCL 299

Query: 176 PELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNI 235
           P L +F    K +R  Q    T +  +             F+    +  L+V +  +  +
Sbjct: 300 PHLKNFFSREKTSRLCQAQPNTVATSVG------------FD---GVKRLKVSDFPQ--L 342

Query: 236 EKIWHNQLPVAMFLCFQNLTRLILRK-CPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEI 294
           +K WH QLP   F  F NLT L + + C  L  +  +++L     L  L++R C  L+ +
Sbjct: 343 KKRWHCQLP---FNFFSNLTSLTVDEYCYSLDAL-PSTLLQFMNDLLELQVRNCDLLEGV 398

Query: 295 ISKEGADDQVPPNFVFPQVTILRLVGLPELK--CLYPGMHTSEWPALKLLDVSACDQ-VT 351
              +G   +       P +  L L+GL  L+  C        E+  L  L+V  C   + 
Sbjct: 399 FDLKGLGPE-EGRVWLPCLYELNLIGLSSLRHICNTDPQGILEFRNLNFLEVHDCSSLIN 457

Query: 352 VFDSEL-----------FSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMI 400
           +F   +              C+  EE      A +   + + +FP L+ + L+       
Sbjct: 458 IFTPSMALSLVHLQKIVIRNCDKMEEIITKERAGEEEAMNKIIFPVLKVIILE------- 510

Query: 401 WHGDFPQ--HLFGGLKVLQLKFDASAAVVSSCDNLLILLPS------------------- 439
                P+  +++ G  VL L        +  C N+ I + S                   
Sbjct: 511 ---SLPELSNIYSGSGVLNLT-SLEEICIDDCPNMKIFISSLVEEPEPNSVGKGKEQRQG 566

Query: 440 ------------SSVSFRNLK--------ILEVS--------------GCKKLTNLVASS 465
                         V+F  LK        I+EV+               C  L NL  SS
Sbjct: 567 QGGNYNFTALLNYKVAFPELKKLRVDWNTIMEVTQRGQFRTEFFCRLKSCLGLLNLFTSS 626

Query: 466 AAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYI 525
            A+SLV LVK+ +  C+ MT VV  +G   A +EI+F+KL+ L LLDL +LTSFC  NY 
Sbjct: 627 TAKSLVQLVKLTIAHCKKMTVVVARQGGDEADDEIIFSKLEYLELLDLQNLTSFCFENYA 686

Query: 526 FKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYR--NRGAPCWDGDLNTTIQQLH 580
           F+FPSL+ + V  CP M  F+ G LSTP    V ++  ++    W G+L+ TIQ L+
Sbjct: 687 FRFPSLKEMVVEECPNMKSFSPGVLSTPKLQGVHWKKYSKNTVHWHGNLDITIQHLY 743

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	595
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.253	0.166	0.268	0.00023

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 43/160 (26%), Positives = 81/160 (50%)

Query:    22 KDVEYLCLDKSQDVKNV-LFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80
             K +++L +++  ++    L  L   G   L+ L +++  D   +V   +    +D  P L
Sbjct:   691 KHIQHLHVEECNELLYFNLPSLTNHG-RNLRRLSIKSCHDLEYLVTPADFE--NDWLPSL 747

Query:    81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN 140
             E L L++L  L R+  + +S      ++ I +  C++L N+   S  + LP+LE I + +
Sbjct:   748 EVLTLHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNV---SWVQKLPKLEVIELFD 804

Query:   141 CRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS 180
             CR I+E+ + + E  +++   + F  L TL    LPEL S
Sbjct:   805 CREIEEL-ISEHESPSVEDPTL-FPSLKTLRTRDLPELNS 842

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	595
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.82
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.75
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.74
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.67
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.6
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.53
KOG4341	483	consensus F-box protein containing LRR [General fu	99.41
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.4
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.4
KOG4341	483	consensus F-box protein containing LRR [General fu	99.39
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.21
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.16
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.74
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.71
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.58
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.54
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.23
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.23
PRK15386	426	type III secretion protein GogB; Provisional	98.13
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.11
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.96
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.93
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.92
PRK15386	426	type III secretion protein GogB; Provisional	97.8
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.64
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.56
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.5
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.47
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.25
PLN03150	623	hypothetical protein; Provisional	97.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.1
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.81
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.54
PLN03150	623	hypothetical protein; Provisional	96.53
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.53
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.42
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.13
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.5
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.15
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.84
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.6
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.51
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.18
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	89.79
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.78
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.49
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	85.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	84.91
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.95
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.83
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	81.26

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=3.4e-27  Score=273.56  Aligned_cols=300  Identities=17%  Similarity=0.084  Sum_probs=158.6

Q ss_pred             ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689            2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE   81 (595)
Q Consensus         2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~   81 (595)
                      |.|+|+.|.+.-. -..+.+++|++|++++|......+..+  +.+++|++|++++| .+....+.     .+..+++|+
T Consensus       121 ~~L~Ls~n~l~~~-~p~~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n-~l~~~~p~-----~~~~l~~L~  191 (968)
T PLN00113        121 RYLNLSNNNFTGS-IPRGSIPNLETLDLSNNMLSGEIPNDI--GSFSSLKVLDLGGN-VLVGKIPN-----SLTNLTSLE  191 (968)
T ss_pred             CEEECcCCccccc-cCccccCCCCEEECcCCcccccCChHH--hcCCCCCEEECccC-cccccCCh-----hhhhCcCCC
Confidence            4566666543211 111367889999999887755554445  78899999999888 44433233     456788899


Q ss_pred             EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689           82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK  161 (595)
Q Consensus        82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  161 (595)
                      +|+++++ .+...  .+..++.+++|++|++++|. +....+ ..++++++|++|++++|.....++.          ..
T Consensus       192 ~L~L~~n-~l~~~--~p~~l~~l~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~----------~l  256 (968)
T PLN00113        192 FLTLASN-QLVGQ--IPRELGQMKSLKWIYLGYNN-LSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPS----------SL  256 (968)
T ss_pred             eeeccCC-CCcCc--CChHHcCcCCccEEECcCCc-cCCcCC-hhHhcCCCCCEEECcCceeccccCh----------hH
Confidence            9999886 44332  13346788889999998864 443332 6678888999999988654444432          23


Q ss_pred             ccccccceEecCCCCCcccccccc-ccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecc
Q 036689          162 IEFGQLSTLCLGSLPELTSFCCEV-KKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWH  240 (595)
Q Consensus       162 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  240 (595)
                      ..+++|+.|+++++.-...++... ....+..+....|.-.        ..   .-.....+++|+.|++++|.+...  
T Consensus       257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--------~~---~p~~~~~l~~L~~L~l~~n~~~~~--  323 (968)
T PLN00113        257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS--------GE---IPELVIQLQNLEILHLFSNNFTGK--  323 (968)
T ss_pred             hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec--------cC---CChhHcCCCCCcEEECCCCccCCc--
Confidence            446778888777654332222111 0011111111111000        00   000112355666666666644322  


Q ss_pred             cCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecC
Q 036689          241 NQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVG  320 (595)
Q Consensus       241 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~  320 (595)
                        .|..+ ..+++|+.|++++|..... .+. .++.+++|+.|++++|. +....+....        .+++|+.|++.+
T Consensus       324 --~~~~~-~~l~~L~~L~L~~n~l~~~-~p~-~l~~~~~L~~L~Ls~n~-l~~~~p~~~~--------~~~~L~~L~l~~  389 (968)
T PLN00113        324 --IPVAL-TSLPRLQVLQLWSNKFSGE-IPK-NLGKHNNLTVLDLSTNN-LTGEIPEGLC--------SSGNLFKLILFS  389 (968)
T ss_pred             --CChhH-hcCCCCCEEECcCCCCcCc-CCh-HHhCCCCCcEEECCCCe-eEeeCChhHh--------CcCCCCEEECcC
Confidence              13332 4556666666665532222 222 24556666666666665 4332221111        145566666655


Q ss_pred             CCCcccccCCCccccCcccceeeecCCCCccccc
Q 036689          321 LPELKCLYPGMHTSEWPALKLLDVSACDQVTVFD  354 (595)
Q Consensus       321 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  354 (595)
                      +.....++...  ..+++|+.|++.+|.....+|
T Consensus       390 n~l~~~~p~~~--~~~~~L~~L~L~~n~l~~~~p  421 (968)
T PLN00113        390 NSLEGEIPKSL--GACRSLRRVRLQDNSFSGELP  421 (968)
T ss_pred             CEecccCCHHH--hCCCCCCEEECcCCEeeeECC
Confidence            44222222211  125666666666655433333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=2.8e-27  Score=274.19  Aligned_cols=486  Identities=16%  Similarity=0.104  Sum_probs=257.6

Q ss_pred             eecccccccc-cCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689            3 TLKLKFNSVS-ICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE   81 (595)
Q Consensus         3 ~l~l~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~   81 (595)
                      .|+|..+.++ ..+..++.+++|++|+|+++.....++..+ ...+++|++|++++| .++...       ....+++|+
T Consensus        73 ~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~-~~~l~~L~~L~Ls~n-~l~~~~-------p~~~l~~L~  143 (968)
T PLN00113         73 SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI-FTTSSSLRYLNLSNN-NFTGSI-------PRGSIPNLE  143 (968)
T ss_pred             EEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHH-hccCCCCCEEECcCC-cccccc-------CccccCCCC
Confidence            4555555432 125556688999999999987755554443 258899999999988 454321       224578899


Q ss_pred             EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689           82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK  161 (595)
Q Consensus        82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  161 (595)
                      +|+++++ .+...  .+..++.+++|++|++++|......|  ..+.++++|++|++++|.....+|.          ..
T Consensus       144 ~L~Ls~n-~~~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~----------~l  208 (968)
T PLN00113        144 TLDLSNN-MLSGE--IPNDIGSFSSLKVLDLGGNVLVGKIP--NSLTNLTSLEFLTLASNQLVGQIPR----------EL  208 (968)
T ss_pred             EEECcCC-ccccc--CChHHhcCCCCCEEECccCcccccCC--hhhhhCcCCCeeeccCCCCcCcCCh----------HH
Confidence            9999886 44422  13347788889999998864333333  5677888899998888765444442          23


Q ss_pred             ccccccceEecCCCCCcccccccc-ccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecc
Q 036689          162 IEFGQLSTLCLGSLPELTSFCCEV-KKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWH  240 (595)
Q Consensus       162 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  240 (595)
                      ..+++|+.|+++++.-....+... ....+..+....|.-.        ..   .-.....+++|+.|++++|.+...  
T Consensus       209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--------~~---~p~~l~~l~~L~~L~L~~n~l~~~--  275 (968)
T PLN00113        209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT--------GP---IPSSLGNLKNLQYLFLYQNKLSGP--  275 (968)
T ss_pred             cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec--------cc---cChhHhCCCCCCEEECcCCeeecc--
Confidence            345667777766654332222211 1111111111111000        00   001122355566666665544322  


Q ss_pred             cCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecC
Q 036689          241 NQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVG  320 (595)
Q Consensus       241 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~  320 (595)
                        +|..+ ..+++|++|++++|. +....+. .+.++++|++|++++|. +....+....        .+++|+.|++.+
T Consensus       276 --~p~~l-~~l~~L~~L~Ls~n~-l~~~~p~-~~~~l~~L~~L~l~~n~-~~~~~~~~~~--------~l~~L~~L~L~~  341 (968)
T PLN00113        276 --IPPSI-FSLQKLISLDLSDNS-LSGEIPE-LVIQLQNLEILHLFSNN-FTGKIPVALT--------SLPRLQVLQLWS  341 (968)
T ss_pred             --CchhH-hhccCcCEEECcCCe-eccCCCh-hHcCCCCCcEEECCCCc-cCCcCChhHh--------cCCCCCEEECcC
Confidence              13332 345566666665542 2222222 23555666666665554 3322211111        155566666655


Q ss_pred             CCCcccccCCCccccCcccceeeecCCCCccccccccccccC-CCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCee
Q 036689          321 LPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCE-SSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRM  399 (595)
Q Consensus       321 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~  399 (595)
                      +.....++...  ..+++|+.|+++++.....+|..+..... ....... ..-.......+..+++|+.|++++|+..+
T Consensus       342 n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~-n~l~~~~p~~~~~~~~L~~L~L~~n~l~~  418 (968)
T PLN00113        342 NKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS-NSLEGEIPKSLGACRSLRRVRLQDNSFSG  418 (968)
T ss_pred             CCCcCcCChHH--hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcC-CEecccCCHHHhCCCCCCEEECcCCEeee
Confidence            44322222211  11455555555554433223321111000 0000000 00000011112334455555555554332


Q ss_pred             ccCCC----------------------CCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCC
Q 036689          400 IWHGD----------------------FPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKK  457 (595)
Q Consensus       400 ~~~~~----------------------~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~  457 (595)
                      ..+..                      .....+++|+.|++.         .| .+....+ .....++|+.|++++| .
T Consensus       419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~---------~n-~~~~~~p-~~~~~~~L~~L~ls~n-~  486 (968)
T PLN00113        419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA---------RN-KFFGGLP-DSFGSKRLENLDLSRN-Q  486 (968)
T ss_pred             ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc---------Cc-eeeeecC-cccccccceEEECcCC-c
Confidence            21110                      011233445555543         22 2332333 2223567888888875 4


Q ss_pred             CcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEe
Q 036689          458 LTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVV  537 (595)
Q Consensus       458 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~  537 (595)
                      +....+ ..+..+++|++|++++|.-...++....        .+++|+.|++++|.-...+|...  ..+++|+.|+++
T Consensus       487 l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--------~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls  555 (968)
T PLN00113        487 FSGAVP-RKLGSLSELMQLKLSENKLSGEIPDELS--------SCKKLVSLDLSHNQLSGQIPASF--SEMPVLSQLDLS  555 (968)
T ss_pred             cCCccC-hhhhhhhccCEEECcCCcceeeCChHHc--------CccCCCEEECCCCcccccCChhH--hCcccCCEEECC
Confidence            444333 3456788899999988874334444333        38899999999975444555444  348999999999


Q ss_pred             CCCCccccCCCCCCCCCcceEEeccCCC
Q 036689          538 GCPKMNIFTTGELSTPPRVDVMYRNRGA  565 (595)
Q Consensus       538 ~C~~l~~lp~~~~~~~~L~~l~i~~~~~  565 (595)
                      +|.....+|..+.++++|+++++++|..
T Consensus       556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        556 QNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             CCcccccCChhHhcCcccCEEeccCCcc
Confidence            9987778999998899999999997654

>PLN03210 Resistant to P

Probab=99.89  E-value=5.5e-22  Score=230.55  Aligned_cols=355  Identities=18%  Similarity=0.243  Sum_probs=252.4

Q ss_pred             ccCcccccccccccEEEeccCCCC------cccccccccccc-CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEe
Q 036689           12 SICSKKLQGIKDVEYLCLDKSQDV------KNVLFDLDREGF-LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLN   84 (595)
Q Consensus        12 ~~~~~~~~~l~~L~~L~L~~~~~~------~~~~~~~~~~~l-~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~   84 (595)
                      .+++++|..+.+|+.|.+.....-      ..++..+  ..+ ++|+.|++.++ .++.++..       ..+.+|++|+
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~--~~lp~~Lr~L~~~~~-~l~~lP~~-------f~~~~L~~L~  617 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF--DYLPPKLRLLRWDKY-PLRCMPSN-------FRPENLVKLQ  617 (1153)
T ss_pred             eecHHHHhcCccccEEEEecccccccccceeecCcch--hhcCcccEEEEecCC-CCCCCCCc-------CCccCCcEEE
Confidence            455777889999999999765321      1122222  334 46999999988 56666322       2468999999


Q ss_pred             ccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccc
Q 036689           85 LYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEF  164 (595)
Q Consensus        85 l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~  164 (595)
                      +.++ +++.+|.+   +..+++|++|++++|..++.+|   .++.+++|++|++++|..+..+|.          .+..+
T Consensus       618 L~~s-~l~~L~~~---~~~l~~Lk~L~Ls~~~~l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~----------si~~L  680 (1153)
T PLN03210        618 MQGS-KLEKLWDG---VHSLTGLRNIDLRGSKNLKEIP---DLSMATNLETLKLSDCSSLVELPS----------SIQYL  680 (1153)
T ss_pred             CcCc-cccccccc---cccCCCCCEEECCCCCCcCcCC---ccccCCcccEEEecCCCCccccch----------hhhcc
Confidence            9995 78887554   6789999999999988888764   367899999999999999888773          34568


Q ss_pred             cccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccc-cceeecccCC
Q 036689          165 GQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKV-NIEKIWHNQL  243 (595)
Q Consensus       165 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~  243 (595)
                      ++|+.|++++|..+..++.+.                                   ++++|+.|++++| .+..+     
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~i-----------------------------------~l~sL~~L~Lsgc~~L~~~-----  720 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTGI-----------------------------------NLKSLYRLNLSGCSRLKSF-----  720 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCcC-----------------------------------CCCCCCEEeCCCCCCcccc-----
Confidence            899999999999988866421                                   4788999999998 55544     


Q ss_pred             CccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCC
Q 036689          244 PVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPE  323 (595)
Q Consensus       244 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~  323 (595)
                      |.    ...+|+.|++.++ .++.++..   ..+++|++|.+.++. ...+... ...........+++|+.|++++|+.
T Consensus       721 p~----~~~nL~~L~L~~n-~i~~lP~~---~~l~~L~~L~l~~~~-~~~l~~~-~~~l~~~~~~~~~sL~~L~Ls~n~~  790 (1153)
T PLN03210        721 PD----ISTNISWLDLDET-AIEEFPSN---LRLENLDELILCEMK-SEKLWER-VQPLTPLMTMLSPSLTRLFLSDIPS  790 (1153)
T ss_pred             cc----ccCCcCeeecCCC-cccccccc---ccccccccccccccc-hhhcccc-ccccchhhhhccccchheeCCCCCC
Confidence            53    2578999999875 46665432   367888888887765 2222110 0000000011257899999999988


Q ss_pred             cccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCC
Q 036689          324 LKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHG  403 (595)
Q Consensus       324 l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~  403 (595)
                      +..+|....  .+++|+.|++++|..++.+|.                         ...+++|++|++++|..+..++.
T Consensus       791 l~~lP~si~--~L~~L~~L~Ls~C~~L~~LP~-------------------------~~~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        791 LVELPSSIQ--NLHKLEHLEIENCINLETLPT-------------------------GINLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             ccccChhhh--CCCCCCEEECCCCCCcCeeCC-------------------------CCCccccCEEECCCCCccccccc
Confidence            887776533  389999999999999998887                         23688999999999987654322


Q ss_pred             CCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCccc
Q 036689          404 DFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRA  483 (595)
Q Consensus       404 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~  483 (595)
                           ...+|+.|++.          .+.+..++. ++..+++|+.|++++|++++.++.  ....++.|+.+++++|..
T Consensus       844 -----~~~nL~~L~Ls----------~n~i~~iP~-si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        844 -----ISTNISDLNLS----------RTGIEEVPW-WIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             -----cccccCEeECC----------CCCCccChH-HHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcc
Confidence                 23567777773          344555543 667788888888888888887643  235678888888888887


Q ss_pred             ccchh
Q 036689          484 MTQVV  488 (595)
Q Consensus       484 l~~i~  488 (595)
                      ++.+.
T Consensus       906 L~~~~  910 (1153)
T PLN03210        906 LTEAS  910 (1153)
T ss_pred             ccccc
Confidence            76553

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.4e-23  Score=209.16  Aligned_cols=372  Identities=18%  Similarity=0.179  Sum_probs=251.2

Q ss_pred             cCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhh
Q 036689           47 FLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSA  126 (595)
Q Consensus        47 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~  126 (595)
                      .+.-+.|++++| .+..+...     ++..+|+|+++.+.++ .++.++..   .....+|+.|+|.+ +.++++.. ..
T Consensus        77 p~~t~~LdlsnN-kl~~id~~-----~f~nl~nLq~v~l~~N-~Lt~IP~f---~~~sghl~~L~L~~-N~I~sv~s-e~  144 (873)
T KOG4194|consen   77 PSQTQTLDLSNN-KLSHIDFE-----FFYNLPNLQEVNLNKN-ELTRIPRF---GHESGHLEKLDLRH-NLISSVTS-EE  144 (873)
T ss_pred             ccceeeeecccc-ccccCcHH-----HHhcCCcceeeeeccc-hhhhcccc---cccccceeEEeeec-cccccccH-HH
Confidence            345667999888 66655322     5678899999999984 88887443   45567799999998 67776654 67


Q ss_pred             hhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccccc
Q 036689          127 AKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLE  206 (595)
Q Consensus       127 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (595)
                      ++.++.|+.||++. +.+.+++..                             +|+                        
T Consensus       145 L~~l~alrslDLSr-N~is~i~~~-----------------------------sfp------------------------  170 (873)
T KOG4194|consen  145 LSALPALRSLDLSR-NLISEIPKP-----------------------------SFP------------------------  170 (873)
T ss_pred             HHhHhhhhhhhhhh-chhhcccCC-----------------------------CCC------------------------
Confidence            78899999999998 666665421                             111                        


Q ss_pred             ccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEee
Q 036689          207 DKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIR  286 (595)
Q Consensus       207 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~  286 (595)
                                    .-.++++|++++|.++.+..+.|     ..+.+|..|.|++ +.++.++.. .+.++++|+.|++.
T Consensus       171 --------------~~~ni~~L~La~N~It~l~~~~F-----~~lnsL~tlkLsr-NrittLp~r-~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  171 --------------AKVNIKKLNLASNRITTLETGHF-----DSLNSLLTLKLSR-NRITTLPQR-SFKRLPKLESLDLN  229 (873)
T ss_pred             --------------CCCCceEEeeccccccccccccc-----cccchheeeeccc-CcccccCHH-Hhhhcchhhhhhcc
Confidence                          23467777777777777744433     3566777777775 456665443 45777788888777


Q ss_pred             cccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCC
Q 036689          287 YCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEE  366 (595)
Q Consensus       287 ~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~  366 (595)
                      .+. +..+-...+.+        +++|+.|.+..+ .+..+..|+.. .+.++++|++..+. +..+..+          
T Consensus       230 rN~-irive~ltFqg--------L~Sl~nlklqrN-~I~kL~DG~Fy-~l~kme~l~L~~N~-l~~vn~g----------  287 (873)
T KOG4194|consen  230 RNR-IRIVEGLTFQG--------LPSLQNLKLQRN-DISKLDDGAFY-GLEKMEHLNLETNR-LQAVNEG----------  287 (873)
T ss_pred             ccc-eeeehhhhhcC--------chhhhhhhhhhc-CcccccCccee-eecccceeecccch-hhhhhcc----------
Confidence            776 65553323333        777777777663 34444333322 15677777776542 3333331          


Q ss_pred             CCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCC
Q 036689          367 DKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRN  446 (595)
Q Consensus       367 ~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~  446 (595)
                                   -+-.+++|+.|+++.|..-.+-.  ......++|++|+|          +.+.+++++++.+..++.
T Consensus       288 -------------~lfgLt~L~~L~lS~NaI~rih~--d~WsftqkL~~LdL----------s~N~i~~l~~~sf~~L~~  342 (873)
T KOG4194|consen  288 -------------WLFGLTSLEQLDLSYNAIQRIHI--DSWSFTQKLKELDL----------SSNRITRLDEGSFRVLSQ  342 (873)
T ss_pred             -------------cccccchhhhhccchhhhheeec--chhhhcccceeEec----------cccccccCChhHHHHHHH
Confidence                         12346778888888776444211  12224567888888          557788888888888999


Q ss_pred             ccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccc
Q 036689          447 LKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIF  526 (595)
Q Consensus       447 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~  526 (595)
                      |+.|+++. ++++++ ....+..+++|++|+++++. +.-.+++...    +.-.+++|+.|.+.+ +++.+++..++. 
T Consensus       343 Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~-ls~~IEDaa~----~f~gl~~LrkL~l~g-Nqlk~I~krAfs-  413 (873)
T KOG4194|consen  343 LEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNE-LSWCIEDAAV----AFNGLPSLRKLRLTG-NQLKSIPKRAFS-  413 (873)
T ss_pred             hhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCe-EEEEEecchh----hhccchhhhheeecC-ceeeecchhhhc-
Confidence            99999998 888887 55667889999999998876 4333322111    122489999999999 689999988765 


Q ss_pred             cCCCccEEEEeCCCCccccCCCCCCCCCcceEEecc
Q 036689          527 KFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRN  562 (595)
Q Consensus       527 ~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~  562 (595)
                      .+++||.|++.+.+-.+-=|..+.++ .||++.++.
T Consensus       414 gl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  414 GLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             cCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            58999999999865433336666666 999998863

>PLN03210 Resistant to P

Probab=99.88  E-value=1.9e-21  Score=226.15  Aligned_cols=386  Identities=18%  Similarity=0.207  Sum_probs=272.8

Q ss_pred             cccCCCcEEEcccCC-----CceEecCCCCCCCcCCcC-CCccEEeccCccCccccccccccccCCCCccEEEecCCCCc
Q 036689           45 EGFLQLKHLHVQNNP-----DFMCIVDSKERVPLDDAF-PILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQL  118 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~-----~l~~i~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l  118 (595)
                      .++++|+.|.+.+..     .+..-.+.     .+..+ ++|+.|++.+. .++.++.   .+ .+.+|++|++.++ .+
T Consensus       555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~-----~~~~lp~~Lr~L~~~~~-~l~~lP~---~f-~~~~L~~L~L~~s-~l  623 (1153)
T PLN03210        555 KGMRNLLFLKFYTKKWDQKKEVRWHLPE-----GFDYLPPKLRLLRWDKY-PLRCMPS---NF-RPENLVKLQMQGS-KL  623 (1153)
T ss_pred             hcCccccEEEEecccccccccceeecCc-----chhhcCcccEEEEecCC-CCCCCCC---cC-CccCCcEEECcCc-cc
Confidence            789999999996542     11111111     23334 46999999985 5565532   23 4689999999995 67


Q ss_pred             ccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccc
Q 036689          119 SNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETC  198 (595)
Q Consensus       119 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~  198 (595)
                      ..++  ..+..+++|+.|++++|..+..+|.           ...+++|+.|++++|..+..++..              
T Consensus       624 ~~L~--~~~~~l~~Lk~L~Ls~~~~l~~ip~-----------ls~l~~Le~L~L~~c~~L~~lp~s--------------  676 (1153)
T PLN03210        624 EKLW--DGVHSLTGLRNIDLRGSKNLKEIPD-----------LSMATNLETLKLSDCSSLVELPSS--------------  676 (1153)
T ss_pred             cccc--cccccCCCCCEEECCCCCCcCcCCc-----------cccCCcccEEEecCCCCccccchh--------------
Confidence            7776  5567899999999999888877762           345789999999999988776542              


Q ss_pred             cCccccccccccCCCccccccccCCccceeecccc-cceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhcc
Q 036689          199 SNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKV-NIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSF  277 (595)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l  277 (595)
                                          ...+++|+.|++++| .++.+     |..+  .+++|+.|++++|..++..+.     ..
T Consensus       677 --------------------i~~L~~L~~L~L~~c~~L~~L-----p~~i--~l~sL~~L~Lsgc~~L~~~p~-----~~  724 (1153)
T PLN03210        677 --------------------IQYLNKLEDLDMSRCENLEIL-----PTGI--NLKSLYRLNLSGCSRLKSFPD-----IS  724 (1153)
T ss_pred             --------------------hhccCCCCEEeCCCCCCcCcc-----CCcC--CCCCCCEEeCCCCCCcccccc-----cc
Confidence                                125789999999998 77766     7654  689999999999988776432     24


Q ss_pred             CCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCC------ccccCcccceeeecCCCCcc
Q 036689          278 EHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGM------HTSEWPALKLLDVSACDQVT  351 (595)
Q Consensus       278 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~------~~~~~~~L~~L~l~~c~~l~  351 (595)
                      ++|++|++.++. ++.+|...          .+++|+.|.+.++....- +...      ....+++|+.|++++|+.+.
T Consensus       725 ~nL~~L~L~~n~-i~~lP~~~----------~l~~L~~L~l~~~~~~~l-~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~  792 (1153)
T PLN03210        725 TNISWLDLDETA-IEEFPSNL----------RLENLDELILCEMKSEKL-WERVQPLTPLMTMLSPSLTRLFLSDIPSLV  792 (1153)
T ss_pred             CCcCeeecCCCc-cccccccc----------cccccccccccccchhhc-cccccccchhhhhccccchheeCCCCCCcc
Confidence            689999999987 77776521          278999999987553211 1100      11125789999999999888


Q ss_pred             ccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCc
Q 036689          352 VFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCD  431 (595)
Q Consensus       352 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~  431 (595)
                      .+|.                       . ++.+++|+.|++++|..++.++..   ..+++|+.|+++         +|.
T Consensus       793 ~lP~-----------------------s-i~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls---------~c~  836 (1153)
T PLN03210        793 ELPS-----------------------S-IQNLHKLEHLEIENCINLETLPTG---INLESLESLDLS---------GCS  836 (1153)
T ss_pred             ccCh-----------------------h-hhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECC---------CCC
Confidence            8887                       2 467999999999999887744422   257788998886         555


Q ss_pred             cccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecc
Q 036689          432 NLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLL  511 (595)
Q Consensus       432 ~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~  511 (595)
                      .+..++.    ..++|+.|++++ +.++.++  ..+..+++|++|++.+|+.++.++.....        +++|+.+++.
T Consensus       837 ~L~~~p~----~~~nL~~L~Ls~-n~i~~iP--~si~~l~~L~~L~L~~C~~L~~l~~~~~~--------L~~L~~L~l~  901 (1153)
T PLN03210        837 RLRTFPD----ISTNISDLNLSR-TGIEEVP--WWIEKFSNLSFLDMNGCNNLQRVSLNISK--------LKHLETVDFS  901 (1153)
T ss_pred             ccccccc----cccccCEeECCC-CCCccCh--HHHhcCCCCCEEECCCCCCcCccCccccc--------ccCCCeeecC
Confidence            5555433    146899999998 6777764  34678999999999999999988775554        8899999999


Q ss_pred             ccccccccccCcc-----------cccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCC
Q 036689          512 DLDSLTSFCSGNY-----------IFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRG  564 (595)
Q Consensus       512 ~~~~l~~l~~~~~-----------~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~  564 (595)
                      +|++++.++....           ...+|+...+.+.+|.++..-+ .+.+....+.+.+.|..
T Consensus       902 ~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a-~l~~~~~~~~~~l~g~e  964 (1153)
T PLN03210        902 DCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEA-LLQQQSIFKQLILSGEE  964 (1153)
T ss_pred             CCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchh-hhcccccceEEECCCcc
Confidence            9999886653211           0124455666777887765322 22222334555555433

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.82  E-value=1.1e-20  Score=188.82  Aligned_cols=375  Identities=17%  Similarity=0.197  Sum_probs=268.4

Q ss_pred             ccCCC-cEEEcccCCCceEecCCCCCCCcC-CcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccc
Q 036689           46 GFLQL-KHLHVQNNPDFMCIVDSKERVPLD-DAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL  123 (595)
Q Consensus        46 ~l~~L-~~L~L~~~~~l~~i~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~  123 (595)
                      .|+.. +.|+.++. ++..+    +|.... .-++.-++|+++++ ++.++.  ...+..+++|+++++.+ +.++.+| 
T Consensus        49 ~c~c~~~lldcs~~-~lea~----~~~~l~g~lp~~t~~LdlsnN-kl~~id--~~~f~nl~nLq~v~l~~-N~Lt~IP-  118 (873)
T KOG4194|consen   49 TCPCNTRLLDCSDR-ELEAI----DKSRLKGFLPSQTQTLDLSNN-KLSHID--FEFFYNLPNLQEVNLNK-NELTRIP-  118 (873)
T ss_pred             cCCCCceeeecCcc-ccccc----cccccCCcCccceeeeecccc-ccccCc--HHHHhcCCcceeeeecc-chhhhcc-
Confidence            45544 34555554 45443    122222 23445788999995 888873  33378999999999999 6888876 


Q ss_pred             hhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccc
Q 036689          124 LSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKIS  203 (595)
Q Consensus       124 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  203 (595)
                       .......+|+.|++.+ +.+..+..                                                      
T Consensus       119 -~f~~~sghl~~L~L~~-N~I~sv~s------------------------------------------------------  142 (873)
T KOG4194|consen  119 -RFGHESGHLEKLDLRH-NLISSVTS------------------------------------------------------  142 (873)
T ss_pred             -cccccccceeEEeeec-cccccccH------------------------------------------------------
Confidence             5555566799999998 55544321                                                      


Q ss_pred             cccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEE
Q 036689          204 SLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHL  283 (595)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L  283 (595)
                                   .++..++.|++||++.|.+.++-...+|.     -.++++|+|++ +.++.+ ....+.++.+|-.|
T Consensus       143 -------------e~L~~l~alrslDLSrN~is~i~~~sfp~-----~~ni~~L~La~-N~It~l-~~~~F~~lnsL~tl  202 (873)
T KOG4194|consen  143 -------------EELSALPALRSLDLSRNLISEIPKPSFPA-----KVNIKKLNLAS-NRITTL-ETGHFDSLNSLLTL  202 (873)
T ss_pred             -------------HHHHhHhhhhhhhhhhchhhcccCCCCCC-----CCCceEEeecc-cccccc-ccccccccchheee
Confidence                         12234788999999999999986666654     36899999996 567765 44456888899999


Q ss_pred             EeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCC
Q 036689          284 EIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCES  363 (595)
Q Consensus       284 ~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~  363 (595)
                      .++++. ++.+|...+-.        +|+|+.|+|.. ++++... +..-..+++|+.|.+.++ ++..+..        
T Consensus       203 kLsrNr-ittLp~r~Fk~--------L~~L~~LdLnr-N~irive-~ltFqgL~Sl~nlklqrN-~I~kL~D--------  262 (873)
T KOG4194|consen  203 KLSRNR-ITTLPQRSFKR--------LPKLESLDLNR-NRIRIVE-GLTFQGLPSLQNLKLQRN-DISKLDD--------  262 (873)
T ss_pred             ecccCc-ccccCHHHhhh--------cchhhhhhccc-cceeeeh-hhhhcCchhhhhhhhhhc-CcccccC--------
Confidence            999998 99998754432        89999999988 4444331 111223788999988765 3544544        


Q ss_pred             CCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccc
Q 036689          364 SEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVS  443 (595)
Q Consensus       364 ~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~  443 (595)
                                     ..+-.+..+++|++..|+...+-.+  ...++..|++|++          +.+.+.++.+..+..
T Consensus       263 ---------------G~Fy~l~kme~l~L~~N~l~~vn~g--~lfgLt~L~~L~l----------S~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  263 ---------------GAFYGLEKMEHLNLETNRLQAVNEG--WLFGLTSLEQLDL----------SYNAIQRIHIDSWSF  315 (873)
T ss_pred             ---------------cceeeecccceeecccchhhhhhcc--cccccchhhhhcc----------chhhhheeecchhhh
Confidence                           2235688999999999987664332  2336788999999          456788887777778


Q ss_pred             cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccC-
Q 036689          444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSG-  522 (595)
Q Consensus       444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-  522 (595)
                      +++|+.|++++ ++++.+.+ ..+..+..|++|.++++. +..+.+..+.       .+.+|+.|+++...--..+.++ 
T Consensus       316 tqkL~~LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~Ns-i~~l~e~af~-------~lssL~~LdLr~N~ls~~IEDaa  385 (873)
T KOG4194|consen  316 TQKLKELDLSS-NRITRLDE-GSFRVLSQLEELNLSHNS-IDHLAEGAFV-------GLSSLHKLDLRSNELSWCIEDAA  385 (873)
T ss_pred             cccceeEeccc-cccccCCh-hHHHHHHHhhhhcccccc-hHHHHhhHHH-------HhhhhhhhcCcCCeEEEEEecch
Confidence            89999999998 88998844 556889999999999987 7777655443       5889999999884322222222 


Q ss_pred             -cccccCCCccEEEEeCCCCccccCC-CCCCCCCcceEEeccCCC
Q 036689          523 -NYIFKFPSLEVLFVVGCPKMNIFTT-GELSTPPRVDVMYRNRGA  565 (595)
Q Consensus       523 -~~~~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~i~~~~~  565 (595)
                       ++. .+|+|++|++.|. +++.+|. .+..+++|+++++.+|.-
T Consensus       386 ~~f~-gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  386 VAFN-GLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             hhhc-cchhhhheeecCc-eeeecchhhhccCcccceecCCCCcc
Confidence             222 3899999999995 8999984 456699999999987665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.75  E-value=2.8e-20  Score=187.05  Aligned_cols=369  Identities=19%  Similarity=0.216  Sum_probs=223.3

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .++.++..+++++...+...|.- ...+++++.|.|.+. ++..++.      ....+.+||+|.+..+ +++.+.-+  
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt-~L~~vPe------EL~~lqkLEHLs~~HN-~L~~vhGE--   73 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRT-KLEQVPE------ELSRLQKLEHLSMAHN-QLISVHGE--   73 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchh-HHHhhheeEEEechh-hhhhChH------HHHHHhhhhhhhhhhh-hhHhhhhh--
Confidence            46778888888888765544432 378889999999876 6776643      3567888899988884 77766322  


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT  179 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  179 (595)
                       ...+|.||.+.++. +.+++.-.+..+-++..|..||+++ +.+.++|..                |            
T Consensus        74 -Ls~Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~----------------L------------  122 (1255)
T KOG0444|consen   74 -LSDLPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTN----------------L------------  122 (1255)
T ss_pred             -hccchhhHHHhhhc-cccccCCCCchhcccccceeeecch-hhhhhcchh----------------h------------
Confidence             56788888888888 5666644336666788888888888 566665521                0            


Q ss_pred             ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689          180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL  259 (595)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L  259 (595)
                                                              -...++-+|++++|+|..+     |..+|.++..|-.|++
T Consensus       123 ----------------------------------------E~AKn~iVLNLS~N~IetI-----Pn~lfinLtDLLfLDL  157 (1255)
T KOG0444|consen  123 ----------------------------------------EYAKNSIVLNLSYNNIETI-----PNSLFINLTDLLFLDL  157 (1255)
T ss_pred             ----------------------------------------hhhcCcEEEEcccCccccC-----CchHHHhhHhHhhhcc
Confidence                                                    1245666788888877777     7776667777777888


Q ss_pred             ecCCCCccccchhhhhccCCCcEEEeecccc----cceecccccCCCCCCCCcCCCcccEEeecCCCCc-ccccCCCccc
Q 036689          260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKG----LQEIISKEGADDQVPPNFVFPQVTILRLVGLPEL-KCLYPGMHTS  334 (595)
Q Consensus       260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~----l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l-~~~~~~~~~~  334 (595)
                      ++ +.+..+||-  +..+..|+.|.++++.-    +..+|.             +.+|.+|.+++-.+. ..+|..... 
T Consensus       158 S~-NrLe~LPPQ--~RRL~~LqtL~Ls~NPL~hfQLrQLPs-------------mtsL~vLhms~TqRTl~N~Ptsld~-  220 (1255)
T KOG0444|consen  158 SN-NRLEMLPPQ--IRRLSMLQTLKLSNNPLNHFQLRQLPS-------------MTSLSVLHMSNTQRTLDNIPTSLDD-  220 (1255)
T ss_pred             cc-chhhhcCHH--HHHHhhhhhhhcCCChhhHHHHhcCcc-------------chhhhhhhcccccchhhcCCCchhh-
Confidence            85 467766553  47777888888887761    222222             555666666664332 223332211 


Q ss_pred             cCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCce
Q 036689          335 EWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLK  414 (595)
Q Consensus       335 ~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~  414 (595)
                       +.+|..++++. +.+..+|..                        .-.+++|+.|++++|+..+..   .......+|+
T Consensus       221 -l~NL~dvDlS~-N~Lp~vPec------------------------ly~l~~LrrLNLS~N~iteL~---~~~~~W~~lE  271 (1255)
T KOG0444|consen  221 -LHNLRDVDLSE-NNLPIVPEC------------------------LYKLRNLRRLNLSGNKITELN---MTEGEWENLE  271 (1255)
T ss_pred             -hhhhhhccccc-cCCCcchHH------------------------HhhhhhhheeccCcCceeeee---ccHHHHhhhh
Confidence             56666666653 456556651                        245677888888877644311   0111223455


Q ss_pred             eEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCcc
Q 036689          415 VLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQ  494 (595)
Q Consensus       415 ~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~  494 (595)
                      .|++          +-+.++.++. .+..++.|+.|+..+ ++++--...+-++.+..|+++...++. ++-+|.+.-  
T Consensus       272 tLNl----------SrNQLt~LP~-avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglc--  336 (1255)
T KOG0444|consen  272 TLNL----------SRNQLTVLPD-AVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLC--  336 (1255)
T ss_pred             hhcc----------ccchhccchH-HHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccc-cccCchhhh--
Confidence            5555          2234444433 455566666666655 444422222334556666666665544 544444322  


Q ss_pred             ccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCcccc
Q 036689          495 LAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIF  545 (595)
Q Consensus       495 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~l  545 (595)
                            .+++|+.|.+.. +.+..+|++...  +|.|+.|++...|++-.-
T Consensus       337 ------RC~kL~kL~L~~-NrLiTLPeaIHl--L~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  337 ------RCVKLQKLKLDH-NRLITLPEAIHL--LPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             ------hhHHHHHhcccc-cceeechhhhhh--cCCcceeeccCCcCccCC
Confidence                  256666666665 455556666543  666666666666666443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.74  E-value=7.4e-20  Score=184.01  Aligned_cols=341  Identities=16%  Similarity=0.224  Sum_probs=240.3

Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS  180 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  180 (595)
                      ...+..++.|.|.. .++..+|  ..++.+.+|++|.+++ +.+..+.          .+...++.|+.+.+.+.+ |+.
T Consensus        28 v~qMt~~~WLkLnr-t~L~~vP--eEL~~lqkLEHLs~~H-N~L~~vh----------GELs~Lp~LRsv~~R~N~-LKn   92 (1255)
T KOG0444|consen   28 VEQMTQMTWLKLNR-TKLEQVP--EELSRLQKLEHLSMAH-NQLISVH----------GELSDLPRLRSVIVRDNN-LKN   92 (1255)
T ss_pred             HHHhhheeEEEech-hhhhhCh--HHHHHHhhhhhhhhhh-hhhHhhh----------hhhccchhhHHHhhhccc-ccc
Confidence            34455666666666 5666665  5566666666666666 3332221          122234444444333211 111


Q ss_pred             cccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEe
Q 036689          181 FCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILR  260 (595)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~  260 (595)
                                                  ..++..+|+    +..|..|++++|++++.     |..+ ..-+++-.|+++
T Consensus        93 ----------------------------sGiP~diF~----l~dLt~lDLShNqL~Ev-----P~~L-E~AKn~iVLNLS  134 (1255)
T KOG0444|consen   93 ----------------------------SGIPTDIFR----LKDLTILDLSHNQLREV-----PTNL-EYAKNSIVLNLS  134 (1255)
T ss_pred             ----------------------------CCCCchhcc----cccceeeecchhhhhhc-----chhh-hhhcCcEEEEcc
Confidence                                        134444555    88899999999999988     8876 677899999999


Q ss_pred             cCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCc----ccccCCCccccC
Q 036689          261 KCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPEL----KCLYPGMHTSEW  336 (595)
Q Consensus       261 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l----~~~~~~~~~~~~  336 (595)
                      + +++..+| ...+.+++.|-+|+++++. ++.+|+..         -.+.+|++|.|+++|-.    +.+|.      .
T Consensus       135 ~-N~IetIP-n~lfinLtDLLfLDLS~Nr-Le~LPPQ~---------RRL~~LqtL~Ls~NPL~hfQLrQLPs------m  196 (1255)
T KOG0444|consen  135 Y-NNIETIP-NSLFINLTDLLFLDLSNNR-LEMLPPQI---------RRLSMLQTLKLSNNPLNHFQLRQLPS------M  196 (1255)
T ss_pred             c-CccccCC-chHHHhhHhHhhhccccch-hhhcCHHH---------HHHhhhhhhhcCCChhhHHHHhcCcc------c
Confidence            6 5777764 4567899999999999998 98888732         12789999999998732    22222      4


Q ss_pred             cccceeeecCCCC-ccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCcee
Q 036689          337 PALKLLDVSACDQ-VTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKV  415 (595)
Q Consensus       337 ~~L~~L~l~~c~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  415 (595)
                      ++|+.|.+++-.. +..+|.                        .+..+.+|..++++.|..-.+.   ...-.+++|+.
T Consensus       197 tsL~vLhms~TqRTl~N~Pt------------------------sld~l~NL~dvDlS~N~Lp~vP---ecly~l~~Lrr  249 (1255)
T KOG0444|consen  197 TSLSVLHMSNTQRTLDNIPT------------------------SLDDLHNLRDVDLSENNLPIVP---ECLYKLRNLRR  249 (1255)
T ss_pred             hhhhhhhcccccchhhcCCC------------------------chhhhhhhhhccccccCCCcch---HHHhhhhhhhe
Confidence            5666666666543 444665                        1467899999999987643221   11235678999


Q ss_pred             EEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcc-cccchhcccCcc
Q 036689          416 LQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCR-AMTQVVKSEGNQ  494 (595)
Q Consensus       416 L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~-~l~~i~~~~~~~  494 (595)
                      |+|++          +.++.+.. ......+|+.|+++. +.++.+|  ..+-.++.|+.|.+.++. ..+.||.+.+. 
T Consensus       250 LNLS~----------N~iteL~~-~~~~W~~lEtLNlSr-NQLt~LP--~avcKL~kL~kLy~n~NkL~FeGiPSGIGK-  314 (1255)
T KOG0444|consen  250 LNLSG----------NKITELNM-TEGEWENLETLNLSR-NQLTVLP--DAVCKLTKLTKLYANNNKLTFEGIPSGIGK-  314 (1255)
T ss_pred             eccCc----------Cceeeeec-cHHHHhhhhhhcccc-chhccch--HHHhhhHHHHHHHhccCcccccCCccchhh-
Confidence            99943          55666544 555677899999998 7888874  445788999999997765 25677777765 


Q ss_pred             ccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCCC
Q 036689          495 LAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGA  565 (595)
Q Consensus       495 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~~  565 (595)
                             +.+|+++...+ ++++-+|++..  +|+.|+.|.++ |..+-.+|.++.-++.|+.++++.|..
T Consensus       315 -------L~~Levf~aan-N~LElVPEglc--RC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  315 -------LIQLEVFHAAN-NKLELVPEGLC--RCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             -------hhhhHHHHhhc-cccccCchhhh--hhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcC
Confidence                   88999999988 68999999985  49999999997 568888999998899999999998776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.68  E-value=1.8e-19  Score=172.68  Aligned_cols=461  Identities=15%  Similarity=0.124  Sum_probs=226.2

Q ss_pred             ccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccc
Q 036689           18 LQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQD   97 (595)
Q Consensus        18 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~   97 (595)
                      +..+.-+..|++.++... ..++.+  +.+..++.|..+++ .+..+++      ...+.++|..|+.++. .+.++   
T Consensus        64 l~nL~~l~vl~~~~n~l~-~lp~ai--g~l~~l~~l~vs~n-~ls~lp~------~i~s~~~l~~l~~s~n-~~~el---  129 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLS-QLPAAI--GELEALKSLNVSHN-KLSELPE------QIGSLISLVKLDCSSN-ELKEL---  129 (565)
T ss_pred             hhcccceeEEEeccchhh-hCCHHH--HHHHHHHHhhcccc-hHhhccH------HHhhhhhhhhhhcccc-ceeec---
Confidence            444555566666666552 344444  66777777777666 4544422      2445666677776663 45544   


Q ss_pred             cccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCC
Q 036689           98 RLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPE  177 (595)
Q Consensus        98 ~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  177 (595)
                      +..++.+-.|..++..+ +++..+|  +.+.++.+|..+++.+ +++++.+.          +.+.+..|++|+.-. .-
T Consensus       130 ~~~i~~~~~l~dl~~~~-N~i~slp--~~~~~~~~l~~l~~~~-n~l~~l~~----------~~i~m~~L~~ld~~~-N~  194 (565)
T KOG0472|consen  130 PDSIGRLLDLEDLDATN-NQISSLP--EDMVNLSKLSKLDLEG-NKLKALPE----------NHIAMKRLKHLDCNS-NL  194 (565)
T ss_pred             CchHHHHhhhhhhhccc-cccccCc--hHHHHHHHHHHhhccc-cchhhCCH----------HHHHHHHHHhcccch-hh
Confidence            23356666666666666 4555555  4455566666666666 34444332          222244455543211 01


Q ss_pred             ccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEE
Q 036689          178 LTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRL  257 (595)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L  257 (595)
                      +..+|....  ++..+.   |-    -+.++.-.   ...+...++.|++++++.|++..+     |..++..++++..|
T Consensus       195 L~tlP~~lg--~l~~L~---~L----yL~~Nki~---~lPef~gcs~L~Elh~g~N~i~~l-----pae~~~~L~~l~vL  257 (565)
T KOG0472|consen  195 LETLPPELG--GLESLE---LL----YLRRNKIR---FLPEFPGCSLLKELHVGENQIEML-----PAEHLKHLNSLLVL  257 (565)
T ss_pred             hhcCChhhc--chhhhH---HH----Hhhhcccc---cCCCCCccHHHHHHHhcccHHHhh-----HHHHhcccccceee
Confidence            112121100  000000   00    00000000   011112344455555555544444     44443445555555


Q ss_pred             EEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCcc-ccC
Q 036689          258 ILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHT-SEW  336 (595)
Q Consensus       258 ~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~-~~~  336 (595)
                      |+.+ ++++++|.  .+..+.+|++|+++++. ++++|.. .        ..+ +|+.|.+.|+| ++.+...... +.-
T Consensus       258 DLRd-Nklke~Pd--e~clLrsL~rLDlSNN~-is~Lp~s-L--------gnl-hL~~L~leGNP-lrTiRr~ii~~gT~  322 (565)
T KOG0472|consen  258 DLRD-NKLKEVPD--EICLLRSLERLDLSNND-ISSLPYS-L--------GNL-HLKFLALEGNP-LRTIRREIISKGTQ  322 (565)
T ss_pred             eccc-cccccCch--HHHHhhhhhhhcccCCc-cccCCcc-c--------ccc-eeeehhhcCCc-hHHHHHHHHcccHH
Confidence            5554 34555433  23455555555555554 5555431 1        113 55555555544 1111110000 000


Q ss_pred             cccceeeecCCCCccccccccccccCCCC-CCCCCCCC-CCCCCCcCccCCCcceEeccCCCCeeccCCCCCc-----cc
Q 036689          337 PALKLLDVSACDQVTVFDSELFSFCESSE-EDKPDIPA-QQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQ-----HL  409 (595)
Q Consensus       337 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~-~~~~~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~  409 (595)
                      .-|++|.=           .+.+...+.. +...+..+ ....|.......+.+.|++++-+...+....+.+     ..
T Consensus       323 ~vLKyLrs-----------~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt  391 (565)
T KOG0472|consen  323 EVLKYLRS-----------KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVT  391 (565)
T ss_pred             HHHHHHHH-----------hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceE
Confidence            01121110           0000001111 11111111 2333444456777888888776544422111110     11


Q ss_pred             ccCceeEEeecccc--------ccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCc
Q 036689          410 FGGLKVLQLKFDAS--------AAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGC  481 (595)
Q Consensus       410 ~~~L~~L~L~~~~~--------~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  481 (595)
                      ..++..-.+..+|+        .-.+.--++..++++..+..+++|..|++++ +-+.++|. . .+++..|+.|+++.+
T Consensus       392 ~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~-e-~~~lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  392 SVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPE-E-MGSLVRLQTLNLSFN  468 (565)
T ss_pred             EEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcch-h-hhhhhhhheeccccc
Confidence            11122222233333        0011122344455555667789999999998 67777753 3 267778999999887


Q ss_pred             ccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEec
Q 036689          482 RAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYR  561 (595)
Q Consensus       482 ~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~  561 (595)
                      . ...+|..-..        +..|+.+-.++ +++.+++.... ..|..|.+|++.+. .+..+|++++++++|+++.+.
T Consensus       469 r-Fr~lP~~~y~--------lq~lEtllas~-nqi~~vd~~~l-~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~  536 (565)
T KOG0472|consen  469 R-FRMLPECLYE--------LQTLETLLASN-NQIGSVDPSGL-KNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELD  536 (565)
T ss_pred             c-cccchHHHhh--------HHHHHHHHhcc-ccccccChHHh-hhhhhcceeccCCC-chhhCChhhccccceeEEEec
Confidence            4 6666543322        23344444443 67888876522 35889999999874 788999999999999999999


Q ss_pred             cCCC
Q 036689          562 NRGA  565 (595)
Q Consensus       562 ~~~~  565 (595)
                      ||..
T Consensus       537 gNpf  540 (565)
T KOG0472|consen  537 GNPF  540 (565)
T ss_pred             CCcc
Confidence            8877

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.67  E-value=1.4e-18  Score=182.70  Aligned_cols=419  Identities=20%  Similarity=0.209  Sum_probs=221.2

Q ss_pred             ccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccc
Q 036689           16 KKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERIC   95 (595)
Q Consensus        16 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~   95 (595)
                      +.+...-+|+.|+++++.. ...+.++  -.+++|+.|.++.+ .+..++ .     ......+|++|.|.+. .+..+ 
T Consensus        39 ~~~~~~v~L~~l~lsnn~~-~~fp~~i--t~l~~L~~ln~s~n-~i~~vp-~-----s~~~~~~l~~lnL~~n-~l~~l-  106 (1081)
T KOG0618|consen   39 EFVEKRVKLKSLDLSNNQI-SSFPIQI--TLLSHLRQLNLSRN-YIRSVP-S-----SCSNMRNLQYLNLKNN-RLQSL-  106 (1081)
T ss_pred             HHhhheeeeEEeecccccc-ccCCchh--hhHHHHhhcccchh-hHhhCc-h-----hhhhhhcchhheeccc-hhhcC-
Confidence            3344333499999998877 3444444  68889999999988 677663 2     4567788999999984 66665 


Q ss_pred             cccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccc-----cccc-ccccccccc-
Q 036689           96 QDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYD-----AIDH-QKIEFGQLS-  168 (595)
Q Consensus        96 ~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~-----~~~~-~~~~~~~L~-  168 (595)
                        |.++..+.+|++|++++ +.+...|  ..+..+..++.+..+++.++..+....-...     .+.. -......++ 
T Consensus       107 --P~~~~~lknl~~LdlS~-N~f~~~P--l~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~  181 (1081)
T KOG0618|consen  107 --PASISELKNLQYLDLSF-NHFGPIP--LVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH  181 (1081)
T ss_pred             --chhHHhhhcccccccch-hccCCCc--hhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe
Confidence              55588899999999999 5666665  5566777777777776533332221100000     0000 000011111 


Q ss_pred             ----------eEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceee
Q 036689          169 ----------TLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKI  238 (595)
Q Consensus       169 ----------~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  238 (595)
                                +++++.+..++.+.+.             |.++              ..-...-++++.|+...|.++..
T Consensus       182 ~ldLr~N~~~~~dls~~~~l~~l~c~-------------rn~l--------------s~l~~~g~~l~~L~a~~n~l~~~  234 (1081)
T KOG0618|consen  182 QLDLRYNEMEVLDLSNLANLEVLHCE-------------RNQL--------------SELEISGPSLTALYADHNPLTTL  234 (1081)
T ss_pred             eeecccchhhhhhhhhccchhhhhhh-------------hccc--------------ceEEecCcchheeeeccCcceee
Confidence                      2222222333222221             1111              00001123444444444433322


Q ss_pred             cccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC--------------CC
Q 036689          239 WHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD--------------QV  304 (595)
Q Consensus       239 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~--------------~~  304 (595)
                      ....       .-.+|++++++. +.+..++  ++++.+++|+.+.+.++. ++.++..-+...              ..
T Consensus       235 ~~~p-------~p~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~nel~yip  303 (1081)
T KOG0618|consen  235 DVHP-------VPLNLQYLDISH-NNLSNLP--EWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNELEYIP  303 (1081)
T ss_pred             cccc-------ccccceeeecch-hhhhcch--HHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhhhhhCC
Confidence            1110       123455555554 3444432  344555555555555544 443332110000              00


Q ss_pred             CCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccC
Q 036689          305 PPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVF  384 (595)
Q Consensus       305 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  384 (595)
                      .....+.+|++|+|.. .++..++.........+|..|..+. .++...|.                       .-...+
T Consensus       304 ~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~-----------------------~~e~~~  358 (1081)
T KOG0618|consen  304 PFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPS-----------------------YEENNH  358 (1081)
T ss_pred             Ccccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhh-cccccccc-----------------------ccchhh
Confidence            0000144455555554 2233333211000011133333321 12222222                       112356


Q ss_pred             CCcceEeccCCCCee-ccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccccc
Q 036689          385 PNLEELGLDGKDIRM-IWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVA  463 (595)
Q Consensus       385 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  463 (595)
                      +.|+.|.+.+|...+ .+   ....++++||.|+|          +-+++.+++...+..+..|+.|+++| ++++.++ 
T Consensus       359 ~~Lq~LylanN~Ltd~c~---p~l~~~~hLKVLhL----------syNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp-  423 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCF---PVLVNFKHLKVLHL----------SYNRLNSFPASKLRKLEELEELNLSG-NKLTTLP-  423 (1081)
T ss_pred             HHHHHHHHhcCcccccch---hhhccccceeeeee----------cccccccCCHHHHhchHHhHHHhccc-chhhhhh-
Confidence            778888888877554 22   12446778888888          45777777777777788888888888 7888874 


Q ss_pred             chHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCc
Q 036689          464 SSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKM  542 (595)
Q Consensus       464 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l  542 (595)
                      .. +..+..|++|...++. +..+| ...        .++.|+.++++. ++|+.+...... ..|.|++|+++|..++
T Consensus       424 ~t-va~~~~L~tL~ahsN~-l~~fP-e~~--------~l~qL~~lDlS~-N~L~~~~l~~~~-p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  424 DT-VANLGRLHTLRAHSNQ-LLSFP-ELA--------QLPQLKVLDLSC-NNLSEVTLPEAL-PSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             HH-HHhhhhhHHHhhcCCc-eeech-hhh--------hcCcceEEeccc-chhhhhhhhhhC-CCcccceeeccCCccc
Confidence            33 3567888888776654 66666 222        378888888886 566654433221 1377888888887653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.60  E-value=2.9e-17  Score=173.03  Aligned_cols=225  Identities=19%  Similarity=0.188  Sum_probs=134.5

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD  301 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  301 (595)
                      +.+|+.+...+|++..+     |..+ ....+|+.|.+..| .++.+++.  ...+..|++|++..+. +.++|...+.-
T Consensus       263 ~~nle~l~~n~N~l~~l-----p~ri-~~~~~L~~l~~~~n-el~yip~~--le~~~sL~tLdL~~N~-L~~lp~~~l~v  332 (1081)
T KOG0618|consen  263 CANLEALNANHNRLVAL-----PLRI-SRITSLVSLSAAYN-ELEYIPPF--LEGLKSLRTLDLQSNN-LPSLPDNFLAV  332 (1081)
T ss_pred             cccceEecccchhHHhh-----HHHH-hhhhhHHHHHhhhh-hhhhCCCc--ccccceeeeeeehhcc-ccccchHHHhh
Confidence            44444444444444333     3222 12344555555443 45554443  3556667777776665 65555411100


Q ss_pred             CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689          302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVT-VFDSELFSFCESSEEDKPDIPAQQPLFLP  380 (595)
Q Consensus       302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  380 (595)
                             ....|+.|..+.. .+...+.- .....+.|+.|++.++..-. .+|.                         
T Consensus       333 -------~~~~l~~ln~s~n-~l~~lp~~-~e~~~~~Lq~LylanN~Ltd~c~p~-------------------------  378 (1081)
T KOG0618|consen  333 -------LNASLNTLNVSSN-KLSTLPSY-EENNHAALQELYLANNHLTDSCFPV-------------------------  378 (1081)
T ss_pred             -------hhHHHHHHhhhhc-cccccccc-cchhhHHHHHHHHhcCcccccchhh-------------------------
Confidence                   0112444444432 23322211 12226778888888765322 2444                         


Q ss_pred             CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689          381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN  460 (595)
Q Consensus       381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~  460 (595)
                      +..+.+|+.|++++|+.-.+.+  .....++.|++|+|+          .+.++.++. .+..+..|+.|...+ +.+..
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpa--s~~~kle~LeeL~LS----------GNkL~~Lp~-tva~~~~L~tL~ahs-N~l~~  444 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPA--SKLRKLEELEELNLS----------GNKLTTLPD-TVANLGRLHTLRAHS-NQLLS  444 (1081)
T ss_pred             hccccceeeeeecccccccCCH--HHHhchHHhHHHhcc----------cchhhhhhH-HHHhhhhhHHHhhcC-Cceee
Confidence            6789999999999997554322  122356778888894          477888775 778899999999887 77777


Q ss_pred             cccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccc
Q 036689          461 LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDS  515 (595)
Q Consensus       461 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~  515 (595)
                      .|  . +..++.|+.++++.+. ++.+......       .-|+|++|++++...
T Consensus       445 fP--e-~~~l~qL~~lDlS~N~-L~~~~l~~~~-------p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  445 FP--E-LAQLPQLKVLDLSCNN-LSEVTLPEAL-------PSPNLKYLDLSGNTR  488 (1081)
T ss_pred             ch--h-hhhcCcceEEecccch-hhhhhhhhhC-------CCcccceeeccCCcc
Confidence            64  2 4678999999997654 7776544332       237999999999765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.53  E-value=2.5e-17  Score=158.16  Aligned_cols=410  Identities=16%  Similarity=0.152  Sum_probs=225.5

Q ss_pred             cccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccc
Q 036689           15 SKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERI   94 (595)
Q Consensus        15 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~   94 (595)
                      +.+|+-+.+++.|+.+.++. ..+++++  +..++|++|+++.+ .+..+++      .+..+-.|+.|+-.++ ++..+
T Consensus        84 p~aig~l~~l~~l~vs~n~l-s~lp~~i--~s~~~l~~l~~s~n-~~~el~~------~i~~~~~l~dl~~~~N-~i~sl  152 (565)
T KOG0472|consen   84 PAAIGELEALKSLNVSHNKL-SELPEQI--GSLISLVKLDCSSN-ELKELPD------SIGRLLDLEDLDATNN-QISSL  152 (565)
T ss_pred             CHHHHHHHHHHHhhcccchH-hhccHHH--hhhhhhhhhhcccc-ceeecCc------hHHHHhhhhhhhcccc-ccccC
Confidence            66677677888888888877 4566666  78888888888887 5555533      2444556677766663 45544


Q ss_pred             ccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceE----
Q 036689           95 CQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTL----  170 (595)
Q Consensus        95 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L----  170 (595)
                         +..++.+.+|..+++.+ ++++.+++ ..+ ++..|++|+... +.++.+|..          ...+..|+-|    
T Consensus       153 ---p~~~~~~~~l~~l~~~~-n~l~~l~~-~~i-~m~~L~~ld~~~-N~L~tlP~~----------lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  153 ---PEDMVNLSKLSKLDLEG-NKLKALPE-NHI-AMKRLKHLDCNS-NLLETLPPE----------LGGLESLELLYLRR  215 (565)
T ss_pred             ---chHHHHHHHHHHhhccc-cchhhCCH-HHH-HHHHHHhcccch-hhhhcCChh----------hcchhhhHHHHhhh
Confidence               33456666777777777 56666654 222 366677776655 455555532          2222222222    


Q ss_pred             -------ecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCC
Q 036689          171 -------CLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQL  243 (595)
Q Consensus       171 -------~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~  243 (595)
                             ++.+|+.+..++.+.+-...  +-                     -.....++++.+||+..|.++++     
T Consensus       216 Nki~~lPef~gcs~L~Elh~g~N~i~~--lp---------------------ae~~~~L~~l~vLDLRdNklke~-----  267 (565)
T KOG0472|consen  216 NKIRFLPEFPGCSLLKELHVGENQIEM--LP---------------------AEHLKHLNSLLVLDLRDNKLKEV-----  267 (565)
T ss_pred             cccccCCCCCccHHHHHHHhcccHHHh--hH---------------------HHHhcccccceeeeccccccccC-----
Confidence                   23455555555544310000  00                     01122578999999999999988     


Q ss_pred             CccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC----------------------
Q 036689          244 PVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD----------------------  301 (595)
Q Consensus       244 ~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~----------------------  301 (595)
                      |..+ .-+.+|.+||+++ +.++.++..  ++++ .|+.|-+.++. +..+...-..+                      
T Consensus       268 Pde~-clLrsL~rLDlSN-N~is~Lp~s--Lgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se  341 (565)
T KOG0472|consen  268 PDEI-CLLRSLERLDLSN-NDISSLPYS--LGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE  341 (565)
T ss_pred             chHH-HHhhhhhhhcccC-CccccCCcc--cccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence            8876 4678899999996 577776553  6888 99999999886 44432110000                      


Q ss_pred             C-----CCCCCcC------CCcccEEeecCCCCcccccCCCccc-cCcccceeeecCCCCccccccccccccCCCCCCCC
Q 036689          302 D-----QVPPNFV------FPQVTILRLVGLPELKCLYPGMHTS-EWPALKLLDVSACDQVTVFDSELFSFCESSEEDKP  369 (595)
Q Consensus       302 ~-----~~~~~~~------l~~L~~L~L~~~~~l~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~  369 (595)
                      +     ...+.+.      ..+.|.|++++ .+++.+|...... .-.-.+..+++.. .+..+|.++.           
T Consensus       342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~-----------  408 (565)
T KOG0472|consen  342 GGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLV-----------  408 (565)
T ss_pred             ccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccc-hHhhhhhhhH-----------
Confidence            0     0011111      23456666665 3444444332110 0001223333332 1333443211           


Q ss_pred             CCCCCCCCCCcCccCCCcce-EeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCcc
Q 036689          370 DIPAQQPLFLPEKVFPNLEE-LGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLK  448 (595)
Q Consensus       370 ~~~~~~~l~~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~  448 (595)
                                   .+..+.+ +.++++ .....+  .....+++|..|++++          +-+-+++ ..++++..|+
T Consensus       409 -------------~lkelvT~l~lsnn-~isfv~--~~l~~l~kLt~L~L~N----------N~Ln~LP-~e~~~lv~Lq  461 (565)
T KOG0472|consen  409 -------------ELKELVTDLVLSNN-KISFVP--LELSQLQKLTFLDLSN----------NLLNDLP-EEMGSLVRLQ  461 (565)
T ss_pred             -------------HHHHHHHHHHhhcC-ccccch--HHHHhhhcceeeeccc----------chhhhcc-hhhhhhhhhh
Confidence                         1111111 112221 111100  1112334444444432          1122332 3556677789


Q ss_pred             EEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccC
Q 036689          449 ILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKF  528 (595)
Q Consensus       449 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~  528 (595)
                      .|+|+. +++..+|  .+..-+..|+.+-.+++ ++.++....-.       ...+|+.|++.+ +.+..+|.+.  ..|
T Consensus       462 ~LnlS~-NrFr~lP--~~~y~lq~lEtllas~n-qi~~vd~~~l~-------nm~nL~tLDL~n-Ndlq~IPp~L--gnm  527 (565)
T KOG0472|consen  462 TLNLSF-NRFRMLP--ECLYELQTLETLLASNN-QIGSVDPSGLK-------NMRNLTTLDLQN-NDLQQIPPIL--GNM  527 (565)
T ss_pred             eecccc-cccccch--HHHhhHHHHHHHHhccc-cccccChHHhh-------hhhhcceeccCC-CchhhCChhh--ccc
Confidence            999987 6666653  22333344555544444 36666544111       377889999988 5788888877  459


Q ss_pred             CCccEEEEeCCC
Q 036689          529 PSLEVLFVVGCP  540 (595)
Q Consensus       529 ~~L~~L~l~~C~  540 (595)
                      .+|++|++.|.|
T Consensus       528 tnL~hLeL~gNp  539 (565)
T KOG0472|consen  528 TNLRHLELDGNP  539 (565)
T ss_pred             cceeEEEecCCc
Confidence            999999999865

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.41  E-value=4.6e-15  Score=143.75  Aligned_cols=324  Identities=18%  Similarity=0.196  Sum_probs=168.6

Q ss_pred             CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhh
Q 036689           48 LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA  127 (595)
Q Consensus        48 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~  127 (595)
                      ..||.|.+.||..+..-    ....+...+|++++|.+.+|.+++....... -..+++|+.|++..|..+++.......
T Consensus       138 g~lk~LSlrG~r~v~~s----slrt~~~~CpnIehL~l~gc~~iTd~s~~sl-a~~C~~l~~l~L~~c~~iT~~~Lk~la  212 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDS----SLRTFASNCPNIEHLALYGCKKITDSSLLSL-ARYCRKLRHLNLHSCSSITDVSLKYLA  212 (483)
T ss_pred             cccccccccccccCCcc----hhhHHhhhCCchhhhhhhcceeccHHHHHHH-HHhcchhhhhhhcccchhHHHHHHHHH
Confidence            46778888777554421    1223456778888888888876665422211 246788888888888888876655567


Q ss_pred             hcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccccc
Q 036689          128 KCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLED  207 (595)
Q Consensus       128 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (595)
                      ..|++|++|++++|+.++.--        +..-.-.+..++.+...+|..+..-                          
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~g--------v~~~~rG~~~l~~~~~kGC~e~~le--------------------------  258 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNG--------VQALQRGCKELEKLSLKGCLELELE--------------------------  258 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCc--------chHHhccchhhhhhhhcccccccHH--------------------------
Confidence            778888888888887765410        0000001122333322233222110                          


Q ss_pred             cccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeec
Q 036689          208 KLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRY  287 (595)
Q Consensus       208 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~  287 (595)
                                                   .+  ....    +.++-+.++++..|..+++.....+...+..|++|+.++
T Consensus       259 -----------------------------~l--~~~~----~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~  303 (483)
T KOG4341|consen  259 -----------------------------AL--LKAA----AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSS  303 (483)
T ss_pred             -----------------------------HH--HHHh----ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccC
Confidence                                         00  0000    123444455555555555543333344555666666666


Q ss_pred             ccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCC
Q 036689          288 CKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEED  367 (595)
Q Consensus       288 c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~  367 (595)
                      |..+++.+......       ..++|+.+.+.+|.++.+.........++.|+.+++.+|....+-              
T Consensus       304 ~t~~~d~~l~aLg~-------~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--------------  362 (483)
T KOG4341|consen  304 CTDITDEVLWALGQ-------HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--------------  362 (483)
T ss_pred             CCCCchHHHHHHhc-------CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--------------
Confidence            66554443322111       156666666666666655544444444666666666666443321              


Q ss_pred             CCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCc
Q 036689          368 KPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNL  447 (595)
Q Consensus       368 ~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L  447 (595)
                              .+.....+++.|+.+.+++|...+.-.                              +..+.. ...+...|
T Consensus       363 --------tL~sls~~C~~lr~lslshce~itD~g------------------------------i~~l~~-~~c~~~~l  403 (483)
T KOG4341|consen  363 --------TLASLSRNCPRLRVLSLSHCELITDEG------------------------------IRHLSS-SSCSLEGL  403 (483)
T ss_pred             --------hHhhhccCCchhccCChhhhhhhhhhh------------------------------hhhhhh-cccccccc
Confidence                    011223466777777777665443110                              000000 12234556


Q ss_pred             cEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccc
Q 036689          448 KILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLD  512 (595)
Q Consensus       448 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~  512 (595)
                      +.+.+++|+.+++. .......+++|+.+++.+|..+..-+.....      .++|++++..+..
T Consensus       404 ~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~------~~lp~i~v~a~~a  461 (483)
T KOG4341|consen  404 EVLELDNCPLITDA-TLEHLSICRNLERIELIDCQDVTKEAISRFA------THLPNIKVHAYFA  461 (483)
T ss_pred             ceeeecCCCCchHH-HHHHHhhCcccceeeeechhhhhhhhhHHHH------hhCccceehhhcc
Confidence            77777777766664 3344566677777777777655444332211      1356666554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.40  E-value=2.7e-12  Score=139.74  Aligned_cols=98  Identities=19%  Similarity=0.151  Sum_probs=53.0

Q ss_pred             CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689          223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD  302 (595)
Q Consensus       223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  302 (595)
                      ++|+.|++++|+++.+     |..    ..+|+.|++++| .++.++..     ..+|++|++++|. ++.+|..     
T Consensus       302 ~~L~~LdLS~N~L~~L-----p~l----p~~L~~L~Ls~N-~L~~LP~l-----p~~Lq~LdLS~N~-Ls~LP~l-----  360 (788)
T PRK15387        302 PGLQELSVSDNQLASL-----PAL----PSELCKLWAYNN-QLTSLPTL-----PSGLQELSVSDNQ-LASLPTL-----  360 (788)
T ss_pred             cccceeECCCCccccC-----CCC----cccccccccccC-cccccccc-----ccccceEecCCCc-cCCCCCC-----
Confidence            4577777777766554     331    245666666654 44443321     1357777777765 6655431     


Q ss_pred             CCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCcccccc
Q 036689          303 QVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDS  355 (595)
Q Consensus       303 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  355 (595)
                             .++|+.|++++ +.+..++..     ..+|+.|+++++ .++.+|.
T Consensus       361 -------p~~L~~L~Ls~-N~L~~LP~l-----~~~L~~LdLs~N-~Lt~LP~  399 (788)
T PRK15387        361 -------PSELYKLWAYN-NRLTSLPAL-----PSGLKELIVSGN-RLTSLPV  399 (788)
T ss_pred             -------Ccccceehhhc-cccccCccc-----ccccceEEecCC-cccCCCC
Confidence                   34566666665 334444332     345677777654 3444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.40  E-value=3.1e-12  Score=139.28  Aligned_cols=96  Identities=21%  Similarity=0.164  Sum_probs=52.6

Q ss_pred             ccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCC
Q 036689          224 NLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQ  303 (595)
Q Consensus       224 ~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  303 (595)
                      +|+.|++.+|+++.+     |..    .++|++|+++++ .++.++.     ..++|++|++.+|. ++.++..      
T Consensus       223 ~L~~L~L~~N~Lt~L-----P~l----p~~Lk~LdLs~N-~LtsLP~-----lp~sL~~L~Ls~N~-L~~Lp~l------  280 (788)
T PRK15387        223 HITTLVIPDNNLTSL-----PAL----PPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSNP-LTHLPAL------  280 (788)
T ss_pred             CCCEEEccCCcCCCC-----CCC----CCCCcEEEecCC-ccCcccC-----cccccceeeccCCc-hhhhhhc------
Confidence            566666766666654     432    466777777653 5555432     13466667666665 5554431      


Q ss_pred             CCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccc
Q 036689          304 VPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFD  354 (595)
Q Consensus       304 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  354 (595)
                            +.+|+.|++.++ .+..++..     .++|+.|+++++ .++.+|
T Consensus       281 ------p~~L~~L~Ls~N-~Lt~LP~~-----p~~L~~LdLS~N-~L~~Lp  318 (788)
T PRK15387        281 ------PSGLCKLWIFGN-QLTSLPVL-----PPGLQELSVSDN-QLASLP  318 (788)
T ss_pred             ------hhhcCEEECcCC-cccccccc-----ccccceeECCCC-ccccCC
Confidence                  345666666663 34444332     456666666654 343343

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.39  E-value=3.2e-15  Score=144.76  Aligned_cols=97  Identities=15%  Similarity=0.191  Sum_probs=53.7

Q ss_pred             cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCc
Q 036689          444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGN  523 (595)
Q Consensus       444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  523 (595)
                      ++.|+.+++.+|..+.+.-......+++.|++|.++.|..+++-.....   +........|..+.+.+||.+++-....
T Consensus       345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l---~~~~c~~~~l~~lEL~n~p~i~d~~Le~  421 (483)
T KOG4341|consen  345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL---SSSSCSLEGLEVLELDNCPLITDATLEH  421 (483)
T ss_pred             ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh---hhccccccccceeeecCCCCchHHHHHH
Confidence            4567777776666555542233345667777777776665543311110   0111235567777777777666444332


Q ss_pred             ccccCCCccEEEEeCCCCccc
Q 036689          524 YIFKFPSLEVLFVVGCPKMNI  544 (595)
Q Consensus       524 ~~~~~~~L~~L~l~~C~~l~~  544 (595)
                      . ..|+.|+.+++.+|..+..
T Consensus       422 l-~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  422 L-SICRNLERIELIDCQDVTK  441 (483)
T ss_pred             H-hhCcccceeeeechhhhhh
Confidence            2 2467777777777776654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.21  E-value=2.9e-11  Score=132.61  Aligned_cols=244  Identities=18%  Similarity=0.181  Sum_probs=128.5

Q ss_pred             ccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCC
Q 036689          224 NLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQ  303 (595)
Q Consensus       224 ~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  303 (595)
                      +...|+++++.++.+     |..+   .++|+.|+++++ +++.++..    ..++|++|++++|. ++.++.. .    
T Consensus       179 ~~~~L~L~~~~LtsL-----P~~I---p~~L~~L~Ls~N-~LtsLP~~----l~~nL~~L~Ls~N~-LtsLP~~-l----  239 (754)
T PRK15370        179 NKTELRLKILGLTTI-----PACI---PEQITTLILDNN-ELKSLPEN----LQGNIKTLYANSNQ-LTSIPAT-L----  239 (754)
T ss_pred             CceEEEeCCCCcCcC-----Cccc---ccCCcEEEecCC-CCCcCChh----hccCCCEEECCCCc-cccCChh-h----
Confidence            345666666655554     5433   346777777653 56554321    22467777777665 6655431 0    


Q ss_pred             CCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCcc
Q 036689          304 VPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKV  383 (595)
Q Consensus       304 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  383 (595)
                            .++|+.|+++++. +..++...    ..+|+.|+++++ .++.+|.                          ..
T Consensus       240 ------~~~L~~L~Ls~N~-L~~LP~~l----~s~L~~L~Ls~N-~L~~LP~--------------------------~l  281 (754)
T PRK15370        240 ------PDTIQEMELSINR-ITELPERL----PSALQSLDLFHN-KISCLPE--------------------------NL  281 (754)
T ss_pred             ------hccccEEECcCCc-cCcCChhH----hCCCCEEECcCC-ccCcccc--------------------------cc
Confidence                  3456777777643 44444321    345777777543 4555554                          12


Q ss_pred             CCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccccc
Q 036689          384 FPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVA  463 (595)
Q Consensus       384 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  463 (595)
                      .++|+.|++++|+...+..     ...++|+.|++.          .+.+..++. .+  .++|+.|++++| .++.++ 
T Consensus       282 ~~sL~~L~Ls~N~Lt~LP~-----~lp~sL~~L~Ls----------~N~Lt~LP~-~l--~~sL~~L~Ls~N-~Lt~LP-  341 (754)
T PRK15370        282 PEELRYLSVYDNSIRTLPA-----HLPSGITHLNVQ----------SNSLTALPE-TL--PPGLKTLEAGEN-ALTSLP-  341 (754)
T ss_pred             CCCCcEEECCCCccccCcc-----cchhhHHHHHhc----------CCccccCCc-cc--cccceeccccCC-ccccCC-
Confidence            2466777777665432211     111345555552          233443332 11  246777777664 455442 


Q ss_pred             chHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCcc
Q 036689          464 SSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMN  543 (595)
Q Consensus       464 ~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~  543 (595)
                      ..+   .++|+.|++++|. +..++..          ..++|+.|++++| .++.+|...    .++|+.|++++| ++.
T Consensus       342 ~~l---~~sL~~L~Ls~N~-L~~LP~~----------lp~~L~~LdLs~N-~Lt~LP~~l----~~sL~~LdLs~N-~L~  401 (754)
T PRK15370        342 ASL---PPELQVLDVSKNQ-ITVLPET----------LPPTITTLDVSRN-ALTNLPENL----PAALQIMQASRN-NLV  401 (754)
T ss_pred             hhh---cCcccEEECCCCC-CCcCChh----------hcCCcCEEECCCC-cCCCCCHhH----HHHHHHHhhccC-Ccc
Confidence            221   2567777777664 5544321          1346777777764 566665443    235777777664 455


Q ss_pred             ccCCCCC----CCCCcceEEeccCC
Q 036689          544 IFTTGEL----STPPRVDVMYRNRG  564 (595)
Q Consensus       544 ~lp~~~~----~~~~L~~l~i~~~~  564 (595)
                      .+|..+.    ..+++..+.+.+|.
T Consensus       402 ~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        402 RLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             cCchhHHHHhhcCCCccEEEeeCCC
Confidence            6654432    23666666666544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.16  E-value=1.1e-10  Score=128.14  Aligned_cols=252  Identities=13%  Similarity=0.099  Sum_probs=161.6

Q ss_pred             cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689           21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS  100 (595)
Q Consensus        21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  100 (595)
                      ..+...|++.++.. +.++..+    .++|+.|+|++| .++.++..        .+++|++|+++++ +++.++.    
T Consensus       177 ~~~~~~L~L~~~~L-tsLP~~I----p~~L~~L~Ls~N-~LtsLP~~--------l~~nL~~L~Ls~N-~LtsLP~----  237 (754)
T PRK15370        177 KNNKTELRLKILGL-TTIPACI----PEQITTLILDNN-ELKSLPEN--------LQGNIKTLYANSN-QLTSIPA----  237 (754)
T ss_pred             ccCceEEEeCCCCc-CcCCccc----ccCCcEEEecCC-CCCcCChh--------hccCCCEEECCCC-ccccCCh----
Confidence            35677888887755 4444333    357889999888 67766322        2468999999985 6776521    


Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS  180 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  180 (595)
                       ...++|+.|++++| .++.+|.  .+  ..+|+.|++++ +.+..+|..            ..++|+.|+++++ .++.
T Consensus       238 -~l~~~L~~L~Ls~N-~L~~LP~--~l--~s~L~~L~Ls~-N~L~~LP~~------------l~~sL~~L~Ls~N-~Lt~  297 (754)
T PRK15370        238 -TLPDTIQEMELSIN-RITELPE--RL--PSALQSLDLFH-NKISCLPEN------------LPEELRYLSVYDN-SIRT  297 (754)
T ss_pred             -hhhccccEEECcCC-ccCcCCh--hH--hCCCCEEECcC-CccCccccc------------cCCCCcEEECCCC-cccc
Confidence             22357899999985 5666653  22  24789999885 566666531            1247888888875 3443


Q ss_pred             cccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEe
Q 036689          181 FCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILR  260 (595)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~  260 (595)
                      ++..                                    -.++|+.|++++|.++.+     |..+   .++|+.|+++
T Consensus       298 LP~~------------------------------------lp~sL~~L~Ls~N~Lt~L-----P~~l---~~sL~~L~Ls  333 (754)
T PRK15370        298 LPAH------------------------------------LPSGITHLNVQSNSLTAL-----PETL---PPGLKTLEAG  333 (754)
T ss_pred             Cccc------------------------------------chhhHHHHHhcCCccccC-----Cccc---cccceecccc
Confidence            3311                                    024678888888877655     5443   4688888888


Q ss_pred             cCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccc
Q 036689          261 KCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALK  340 (595)
Q Consensus       261 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~  340 (595)
                      +| .++.++. .   -.++|+.|++++|. ++.+|. ..          .++|+.|++++|. +..++...    ..+|+
T Consensus       334 ~N-~Lt~LP~-~---l~~sL~~L~Ls~N~-L~~LP~-~l----------p~~L~~LdLs~N~-Lt~LP~~l----~~sL~  391 (754)
T PRK15370        334 EN-ALTSLPA-S---LPPELQVLDVSKNQ-ITVLPE-TL----------PPTITTLDVSRNA-LTNLPENL----PAALQ  391 (754)
T ss_pred             CC-ccccCCh-h---hcCcccEEECCCCC-CCcCCh-hh----------cCCcCEEECCCCc-CCCCCHhH----HHHHH
Confidence            76 4665432 1   23689999999887 776543 11          4678899998864 55555432    34688


Q ss_pred             eeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCe
Q 036689          341 LLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIR  398 (595)
Q Consensus       341 ~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  398 (595)
                      .|+++++. +..+|..+.                    .....++++..|++.+|+..
T Consensus       392 ~LdLs~N~-L~~LP~sl~--------------------~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        392 IMQASRNN-LVRLPESLP--------------------HFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHhhccCC-cccCchhHH--------------------HHhhcCCCccEEEeeCCCcc
Confidence            88888753 555554211                    12334577888888888743

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=7.5e-10  Score=123.48  Aligned_cols=100  Identities=26%  Similarity=0.365  Sum_probs=56.9

Q ss_pred             cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCcc--ccccccccccccce-eccccccccccc
Q 036689          444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQ--LAREEIVFNKLKML-SLLDLDSLTSFC  520 (595)
Q Consensus       444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~--~~~~~~~l~~L~~L-~l~~~~~l~~l~  520 (595)
                      ++++..+.+.+|..+.++   .|..-.++|+.|.+..|..++++.......  .......|.++..+ .+.+.+.+.++.
T Consensus       746 f~~l~~~~~~~~~~~r~l---~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~  822 (889)
T KOG4658|consen  746 FPNLSKVSILNCHMLRDL---TWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLY  822 (889)
T ss_pred             HHHHHHHHhhcccccccc---chhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeE
Confidence            445555666666655554   232334666666666666555554332211  11123346666666 466666666555


Q ss_pred             cCcccccCCCccEEEEeCCCCccccCCC
Q 036689          521 SGNYIFKFPSLEVLFVVGCPKMNIFTTG  548 (595)
Q Consensus       521 ~~~~~~~~~~L~~L~l~~C~~l~~lp~~  548 (595)
                      .....  ++.|+.+.+..||+++.+|..
T Consensus       823 ~~~l~--~~~l~~~~ve~~p~l~~~P~~  848 (889)
T KOG4658|consen  823 WLPLS--FLKLEELIVEECPKLGKLPLL  848 (889)
T ss_pred             ecccC--ccchhheehhcCcccccCccc
Confidence            44433  666888888888888877653

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.79  E-value=1.4e-10  Score=112.17  Aligned_cols=87  Identities=26%  Similarity=0.347  Sum_probs=54.4

Q ss_pred             CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689          381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN  460 (595)
Q Consensus       381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~  460 (595)
                      ++.+++|+.|++++|+...+-.+.+  .....++.|.|          .-+++..+....+..+..|+.|++++ ++++.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aF--e~~a~l~eL~L----------~~N~l~~v~~~~f~~ls~L~tL~L~~-N~it~  336 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAF--EGAAELQELYL----------TRNKLEFVSSGMFQGLSGLKTLSLYD-NQITT  336 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhh--cchhhhhhhhc----------CcchHHHHHHHhhhccccceeeeecC-CeeEE
Confidence            4667888888888887665433322  23445666666          33445555444566677788888887 67776


Q ss_pred             cccchHHhhcccccEEEEcCc
Q 036689          461 LVASSAAQSLVALVKMQVFGC  481 (595)
Q Consensus       461 ~~~~~~~~~l~~L~~L~l~~c  481 (595)
                      + ....+..+.+|.+|++-.+
T Consensus       337 ~-~~~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  337 V-APGAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             E-ecccccccceeeeeehccC
Confidence            6 3344566677777777543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.79  E-value=3.2e-10  Score=114.57  Aligned_cols=120  Identities=18%  Similarity=0.021  Sum_probs=53.4

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccc---hhhhhccCCCcEEEeecccccceecccc
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFS---ASMLGSFEHLQHLEIRYCKGLQEIISKE  298 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~  298 (595)
                      ++.|++|++++|.++......++..+ ..+++|++|++++|. +++...   ...+..+++|++|++++|. +++.....
T Consensus       164 ~~~L~~L~l~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~  240 (319)
T cd00116         164 NRDLKELNLANNGIGDAGIRALAEGL-KANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAA  240 (319)
T ss_pred             CCCcCEEECcCCCCchHHHHHHHHHH-HhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHH
Confidence            44566666666655432111112211 234567777776653 322111   1123455667777777765 44321111


Q ss_pred             cCCCCCCCCcCCCcccEEeecCCCCccccc---CCCccccCcccceeeecCCC
Q 036689          299 GADDQVPPNFVFPQVTILRLVGLPELKCLY---PGMHTSEWPALKLLDVSACD  348 (595)
Q Consensus       299 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~---~~~~~~~~~~L~~L~l~~c~  348 (595)
                      .....  . ...+.|++|++.+|. +++..   .......+++|+.++++++.
T Consensus       241 l~~~~--~-~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         241 LASAL--L-SPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHH--h-ccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            11000  0 013567777777754 22100   00011124667777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.78  E-value=1.6e-09  Score=109.46  Aligned_cols=270  Identities=19%  Similarity=0.082  Sum_probs=153.7

Q ss_pred             eecccccccccC-ccc-ccccccccEEEeccCCCCccccccc--cccccCCCcEEEcccCCCceEecCCCCCC---CcCC
Q 036689            3 TLKLKFNSVSIC-SKK-LQGIKDVEYLCLDKSQDVKNVLFDL--DREGFLQLKHLHVQNNPDFMCIVDSKERV---PLDD   75 (595)
Q Consensus         3 ~l~l~~~~~~~~-~~~-~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~i~~~~~~~---~~~~   75 (595)
                      .|+|+.+.++.. ... +..+.+|+.|++.++.........+  .....++|++|.++++ .+...  ...+.   ....
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~--~~~~~~~~~~l~   78 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRI--PRGLQSLLQGLT   78 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCc--chHHHHHHHHHH
Confidence            466666655433 222 3367789999999987632211111  1256778999999887 33311  11111   1233


Q ss_pred             cCCCccEEeccCccCccccccccccccCC---CCccEEEecCCCCcccccc---hhhhhcC-CCCcEEEEcccCCcceee
Q 036689           76 AFPILESLNLYNLIKLERICQDRLSVQSF---NELKTIRVELCDQLSNIFL---LSAAKCL-PRLERIAVINCRNIQEIF  148 (595)
Q Consensus        76 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~l---~~L~~L~L~~c~~l~~~~~---~~~~~~l-~~L~~L~l~~c~~l~~~~  148 (595)
                      .+++|++|+++++ .+....  +..+..+   ++|++|++++|. +.+...   ...+..+ ++|++|++++|.......
T Consensus        79 ~~~~L~~L~l~~~-~~~~~~--~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          79 KGCGLQELDLSDN-ALGPDG--CGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             hcCceeEEEccCC-CCChhH--HHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            4679999999997 443211  1112233   459999999974 442111   1334556 899999999976432111


Q ss_pred             cccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCcccee
Q 036689          149 VVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVL  228 (595)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L  228 (595)
                      .      ........+.+|++|+++++. +......                             .+.......++|+.|
T Consensus       155 ~------~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-----------------------------~l~~~l~~~~~L~~L  198 (319)
T cd00116         155 E------ALAKALRANRDLKELNLANNG-IGDAGIR-----------------------------ALAEGLKANCNLEVL  198 (319)
T ss_pred             H------HHHHHHHhCCCcCEEECcCCC-CchHHHH-----------------------------HHHHHHHhCCCCCEE
Confidence            0      001122345689999988754 2210000                             011122345799999


Q ss_pred             ecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhc----cCCCcEEEeecccccceecccccCCCCC
Q 036689          229 EMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGS----FEHLQHLEIRYCKGLQEIISKEGADDQV  304 (595)
Q Consensus       229 ~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~----l~~L~~L~l~~c~~l~~~~~~~~~~~~~  304 (595)
                      ++++|.+++.....++..+ ..+++|++|++++|. +++.....++..    .+.|++|++.+|. +++........   
T Consensus       199 ~L~~n~i~~~~~~~l~~~~-~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~---  272 (319)
T cd00116         199 DLNNNGLTDEGASALAETL-ASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAE---  272 (319)
T ss_pred             eccCCccChHHHHHHHHHh-cccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHH---
Confidence            9999977654333333332 457899999999874 554322223333    3799999999997 65221111100   


Q ss_pred             CCCcCCCcccEEeecCCC
Q 036689          305 PPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       305 ~~~~~l~~L~~L~L~~~~  322 (595)
                       ....+++|+.++++++.
T Consensus       273 -~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         273 -VLAEKESLLELDLRGNK  289 (319)
T ss_pred             -HHhcCCCccEEECCCCC
Confidence             01116889999999954

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.74  E-value=5.7e-10  Score=95.73  Aligned_cols=160  Identities=21%  Similarity=0.303  Sum_probs=111.9

Q ss_pred             ccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchh
Q 036689           46 GFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLS  125 (595)
Q Consensus        46 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~  125 (595)
                      .+.+...|.|+++ .++.+++.      ...+.+||.|++.++ .++++   +.++..+++|+.|++.- +.+..+|  .
T Consensus        31 ~~s~ITrLtLSHN-Kl~~vppn------ia~l~nlevln~~nn-qie~l---p~~issl~klr~lnvgm-nrl~~lp--r   96 (264)
T KOG0617|consen   31 NMSNITRLTLSHN-KLTVVPPN------IAELKNLEVLNLSNN-QIEEL---PTSISSLPKLRILNVGM-NRLNILP--R   96 (264)
T ss_pred             chhhhhhhhcccC-ceeecCCc------HHHhhhhhhhhcccc-hhhhc---Chhhhhchhhhheecch-hhhhcCc--c
Confidence            4566677788887 77777543      556778888888884 77776   55578888888888876 5666665  7


Q ss_pred             hhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccc
Q 036689          126 AAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSL  205 (595)
Q Consensus       126 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (595)
                      .++.++.|+.||+..++.-+...                                 +                 |+    
T Consensus        97 gfgs~p~levldltynnl~e~~l---------------------------------p-----------------gn----  122 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSL---------------------------------P-----------------GN----  122 (264)
T ss_pred             ccCCCchhhhhhccccccccccC---------------------------------C-----------------cc----
Confidence            78888888888888743221110                                 0                 11    


Q ss_pred             cccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEe
Q 036689          206 EDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEI  285 (595)
Q Consensus       206 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l  285 (595)
                               .|    .++.|+.|+++.|.+..+     |..+ +.+.+|+.|.+.+. .+-.++.  .++.++.|++|.|
T Consensus       123 ---------ff----~m~tlralyl~dndfe~l-----p~dv-g~lt~lqil~lrdn-dll~lpk--eig~lt~lrelhi  180 (264)
T KOG0617|consen  123 ---------FF----YMTTLRALYLGDNDFEIL-----PPDV-GKLTNLQILSLRDN-DLLSLPK--EIGDLTRLRELHI  180 (264)
T ss_pred             ---------hh----HHHHHHHHHhcCCCcccC-----Chhh-hhhcceeEEeeccC-chhhCcH--HHHHHHHHHHHhc
Confidence                     11    255677778887766655     7766 78889999998874 4444433  3688999999999


Q ss_pred             ecccccceecc
Q 036689          286 RYCKGLQEIIS  296 (595)
Q Consensus       286 ~~c~~l~~~~~  296 (595)
                      .++. ++.+|+
T Consensus       181 qgnr-l~vlpp  190 (264)
T KOG0617|consen  181 QGNR-LTVLPP  190 (264)
T ss_pred             ccce-eeecCh
Confidence            9887 877765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.71  E-value=1e-09  Score=106.28  Aligned_cols=277  Identities=13%  Similarity=0.100  Sum_probs=131.3

Q ss_pred             ccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCC
Q 036689          224 NLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQ  303 (595)
Q Consensus       224 ~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  303 (595)
                      .-..++|..|.|+.+     |...|+.+++|++|+|++ ++++.+.+. .+..++.|-.|-+.+.+.|++++...+.+  
T Consensus        68 ~tveirLdqN~I~~i-----P~~aF~~l~~LRrLdLS~-N~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g--  138 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSI-----PPGAFKTLHRLRRLDLSK-NNISFIAPD-AFKGLASLLSLVLYGNNKITDLPKGAFGG--  138 (498)
T ss_pred             cceEEEeccCCcccC-----Chhhccchhhhceecccc-cchhhcChH-hhhhhHhhhHHHhhcCCchhhhhhhHhhh--
Confidence            455667777767666     655556677777777775 456665443 34666666666666644477776644443  


Q ss_pred             CCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCcc
Q 036689          304 VPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKV  383 (595)
Q Consensus       304 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  383 (595)
                            +..|+.|.+..+. +..+..+. ...+++|..|.+.+. .+..++.                       ..+..
T Consensus       139 ------L~slqrLllNan~-i~Cir~~a-l~dL~~l~lLslyDn-~~q~i~~-----------------------~tf~~  186 (498)
T KOG4237|consen  139 ------LSSLQRLLLNANH-INCIRQDA-LRDLPSLSLLSLYDN-KIQSICK-----------------------GTFQG  186 (498)
T ss_pred             ------HHHHHHHhcChhh-hcchhHHH-HHHhhhcchhcccch-hhhhhcc-----------------------ccccc
Confidence                  5566666665532 22111111 111455555555553 2333333                       12344


Q ss_pred             CCCcceEeccCCCCeeccCCCCCcccccCceeEEe---------ecccc-ccccccCccccccCCCCccc-cCCccEEeE
Q 036689          384 FPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQL---------KFDAS-AAVVSSCDNLLILLPSSSVS-FRNLKILEV  452 (595)
Q Consensus       384 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L---------~~~~~-~l~~~~~~~l~~~~~~~~~~-l~~L~~L~l  452 (595)
                      +.+++.+.+..++....          .+|+++.=         ++..- .-+...-+.+..+....+.. ..++..-.-
T Consensus       187 l~~i~tlhlA~np~icd----------CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~  256 (498)
T KOG4237|consen  187 LAAIKTLHLAQNPFICD----------CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLS  256 (498)
T ss_pred             hhccchHhhhcCccccc----------cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhc
Confidence            56666666655553321          01111100         00000 00000000000000000000 001111112


Q ss_pred             eCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCcc
Q 036689          453 SGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLE  532 (595)
Q Consensus       453 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~  532 (595)
                      +.|...... |...++.+++|++|+++++. ++.|....+.       ....++.|.+.. +++..+..+++. .+..|+
T Consensus       257 ~~d~~d~~c-P~~cf~~L~~L~~lnlsnN~-i~~i~~~aFe-------~~a~l~eL~L~~-N~l~~v~~~~f~-~ls~L~  325 (498)
T KOG4237|consen  257 SEDFPDSIC-PAKCFKKLPNLRKLNLSNNK-ITRIEDGAFE-------GAAELQELYLTR-NKLEFVSSGMFQ-GLSGLK  325 (498)
T ss_pred             cccCcCCcC-hHHHHhhcccceEeccCCCc-cchhhhhhhc-------chhhhhhhhcCc-chHHHHHHHhhh-ccccce
Confidence            233322222 33345667777777776665 6666544333       355666666666 466666555543 456677


Q ss_pred             EEEEeCCCCcccc-CCCCCCCCCcceEEeccC
Q 036689          533 VLFVVGCPKMNIF-TTGELSTPPRVDVMYRNR  563 (595)
Q Consensus       533 ~L~l~~C~~l~~l-p~~~~~~~~L~~l~i~~~  563 (595)
                      .|.+++. +++.+ |..+..+.+|.+|.+-+|
T Consensus       326 tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~N  356 (498)
T KOG4237|consen  326 TLSLYDN-QITTVAPGAFQTLFSLSTLNLLSN  356 (498)
T ss_pred             eeeecCC-eeEEEecccccccceeeeeehccC
Confidence            7777764 45554 444556666777666543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.67  E-value=1.4e-08  Score=113.46  Aligned_cols=132  Identities=25%  Similarity=0.250  Sum_probs=72.4

Q ss_pred             cccCCccceeecccccceeecccCCCcccccc-CCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceeccc
Q 036689          219 KVALSNLEVLEMNKVNIEKIWHNQLPVAMFLC-FQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISK  297 (595)
Q Consensus       219 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~-l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  297 (595)
                      ...+.+|+.|.+.++...++............ |+++..+.+.+|...+++.+.   ...|+|+.|.+..|..++++.+.
T Consensus       713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l~~~~~~e~~i~~  789 (889)
T KOG4658|consen  713 LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSLVSCRLLEDIIPK  789 (889)
T ss_pred             cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh---hccCcccEEEEecccccccCCCH
Confidence            44678888998888855432111111111012 667777777788777765443   45688999999999877766543


Q ss_pred             ccCCCCCC-CCcCCCcccEE-eecCCCCcccccCCCccccCcccceeeecCCCCcccccc
Q 036689          298 EGADDQVP-PNFVFPQVTIL-RLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDS  355 (595)
Q Consensus       298 ~~~~~~~~-~~~~l~~L~~L-~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  355 (595)
                      ........ ....+.++..+ .+.+.+.+..+......  ++.|+.+.+..||++..+|.
T Consensus       790 ~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~--~~~l~~~~ve~~p~l~~~P~  847 (889)
T KOG4658|consen  790 LKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS--FLKLEELIVEECPKLGKLPL  847 (889)
T ss_pred             HHHhhhcccEEecccccccceeeecCCCCceeEecccC--ccchhheehhcCcccccCcc
Confidence            22111000 11224444444 24443333333222111  56688888888877765544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.58  E-value=2.5e-09  Score=91.87  Aligned_cols=146  Identities=16%  Similarity=0.209  Sum_probs=100.9

Q ss_pred             ecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEE
Q 036689            4 LKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESL   83 (595)
Q Consensus         4 l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L   83 (595)
                      |.|+.|.++..+.+|+.+++|+.|++.++.. .+++..+  ..++.|++|.+.-+ .+..++ .     .+.+||-||+|
T Consensus        38 LtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~i--ssl~klr~lnvgmn-rl~~lp-r-----gfgs~p~levl  107 (264)
T KOG0617|consen   38 LTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSI--SSLPKLRILNVGMN-RLNILP-R-----GFGSFPALEVL  107 (264)
T ss_pred             hhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhh--hhchhhhheecchh-hhhcCc-c-----ccCCCchhhhh
Confidence            4566666555577788888999999988866 5666666  78899999988644 554442 2     57789999999


Q ss_pred             eccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccccc
Q 036689           84 NLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIE  163 (595)
Q Consensus        84 ~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~  163 (595)
                      |+.++ ++.+- ..+..+..+..|+.|.+++ +.+..+|  +.++++++|+.|.++++ .+-.+|          .++..
T Consensus       108 dltyn-nl~e~-~lpgnff~m~tlralyl~d-ndfe~lp--~dvg~lt~lqil~lrdn-dll~lp----------keig~  171 (264)
T KOG0617|consen  108 DLTYN-NLNEN-SLPGNFFYMTTLRALYLGD-NDFEILP--PDVGKLTNLQILSLRDN-DLLSLP----------KEIGD  171 (264)
T ss_pred             hcccc-ccccc-cCCcchhHHHHHHHHHhcC-CCcccCC--hhhhhhcceeEEeeccC-chhhCc----------HHHHH
Confidence            99985 55432 1222244556778888888 5666665  67888889999888884 344444          24556


Q ss_pred             ccccceEecCCC
Q 036689          164 FGQLSTLCLGSL  175 (595)
Q Consensus       164 ~~~L~~L~l~~~  175 (595)
                      +.+|+.|.+.+.
T Consensus       172 lt~lrelhiqgn  183 (264)
T KOG0617|consen  172 LTRLRELHIQGN  183 (264)
T ss_pred             HHHHHHHhcccc
Confidence            777888877653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.1e-08  Score=100.57  Aligned_cols=238  Identities=17%  Similarity=0.205  Sum_probs=133.7

Q ss_pred             EEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCccccc-chhhhhcC
Q 036689           52 HLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIF-LLSAAKCL  130 (595)
Q Consensus        52 ~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~-~~~~~~~l  130 (595)
                      .+.+++ ..++.+.-+ ....-...+.+|+++.+.++ .+...... .-...|++++.|+|+. +-+.+.. ....+..+
T Consensus        97 ~~si~n-K~vE~iGfD-ki~akQsn~kkL~~IsLdn~-~V~~~~~~-~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqL  171 (505)
T KOG3207|consen   97 VLSISN-KQVEFIGFD-KIAAKQSNLKKLREISLDNY-RVEDAGIE-EYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQL  171 (505)
T ss_pred             HhhhcC-ceeEEecHH-HHHHHhhhHHhhhheeecCc-cccccchh-hhhhhCCcceeecchh-hhHHhHHHHHHHHHhc
Confidence            344433 355555321 11223456777888888875 44433211 1135678888888887 4444432 23566778


Q ss_pred             CCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccccccccc
Q 036689          131 PRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLD  210 (595)
Q Consensus       131 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (595)
                      ++|+.|+++.+ .+.......        ....+++|+.|.++.|---.                               
T Consensus       172 p~Le~LNls~N-rl~~~~~s~--------~~~~l~~lK~L~l~~CGls~-------------------------------  211 (505)
T KOG3207|consen  172 PSLENLNLSSN-RLSNFISSN--------TTLLLSHLKQLVLNSCGLSW-------------------------------  211 (505)
T ss_pred             ccchhcccccc-cccCCcccc--------chhhhhhhheEEeccCCCCH-------------------------------
Confidence            88888888873 333221110        11135667777776653110                               


Q ss_pred             CCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccc
Q 036689          211 ISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKG  290 (595)
Q Consensus       211 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~  290 (595)
                        ..+......+|+|++|++.+|+.  +.....+..   .++.|+.|+|++.+.+ +.......+.+|.|+.|.++.|. 
T Consensus       212 --k~V~~~~~~fPsl~~L~L~~N~~--~~~~~~~~~---i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tg-  282 (505)
T KOG3207|consen  212 --KDVQWILLTFPSLEVLYLEANEI--ILIKATSTK---ILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTG-  282 (505)
T ss_pred             --HHHHHHHHhCCcHHHhhhhcccc--cceecchhh---hhhHHhhccccCCccc-ccccccccccccchhhhhccccC-
Confidence              00111123578888999888841  111222443   4788899999876444 33434456888889999888887 


Q ss_pred             cceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecC
Q 036689          291 LQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSA  346 (595)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~  346 (595)
                      +.++...+...  .--...+|+|+.|++..++ +.+|..-.+...+++|+.|.+..
T Consensus       283 i~si~~~d~~s--~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  283 IASIAEPDVES--LDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             cchhcCCCccc--hhhhcccccceeeecccCc-cccccccchhhccchhhhhhccc
Confidence            77664322210  0112248899999998844 55554433444467777777643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=7.6e-09  Score=101.65  Aligned_cols=188  Identities=15%  Similarity=0.221  Sum_probs=100.7

Q ss_pred             ccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccc-hhhhhccCCCcEEEeecccccceecccc
Q 036689          220 VALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFS-ASMLGSFEHLQHLEIRYCKGLQEIISKE  298 (595)
Q Consensus       220 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~  298 (595)
                      .++..|++..+.++.+...+...   .. ..|++++.|+|++. -+..+.+ ..++.++|+|+.|+++.+. +.......
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~---~~-k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~  191 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEE---YS-KILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSN  191 (505)
T ss_pred             hhHHhhhheeecCccccccchhh---hh-hhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCcccc
Confidence            34566777777766555443221   11 45778888888753 3333322 2356778888888887776 33222111


Q ss_pred             cCCCCCCCCcCCCcccEEeecCCCCc-ccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCC
Q 036689          299 GADDQVPPNFVFPQVTILRLVGLPEL-KCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPL  377 (595)
Q Consensus       299 ~~~~~~~~~~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l  377 (595)
                      ...       .+++|+.|.++.|.-- .++  +.....||+|+.|++..+..+.....                      
T Consensus       192 ~~~-------~l~~lK~L~l~~CGls~k~V--~~~~~~fPsl~~L~L~~N~~~~~~~~----------------------  240 (505)
T KOG3207|consen  192 TTL-------LLSHLKQLVLNSCGLSWKDV--QWILLTFPSLEVLYLEANEIILIKAT----------------------  240 (505)
T ss_pred             chh-------hhhhhheEEeccCCCCHHHH--HHHHHhCCcHHHhhhhcccccceecc----------------------
Confidence            111       2677778887777521 111  11233477777777776643221111                      


Q ss_pred             CCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCC
Q 036689          378 FLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKK  457 (595)
Q Consensus       378 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~  457 (595)
                        ..+.+..|++|++++|+.++....                                   .....++.|+.|+++.| +
T Consensus       241 --~~~i~~~L~~LdLs~N~li~~~~~-----------------------------------~~~~~l~~L~~Lnls~t-g  282 (505)
T KOG3207|consen  241 --STKILQTLQELDLSNNNLIDFDQG-----------------------------------YKVGTLPGLNQLNLSST-G  282 (505)
T ss_pred             --hhhhhhHHhhccccCCcccccccc-----------------------------------cccccccchhhhhcccc-C
Confidence              024566777777777765532110                                   02334667777777764 3


Q ss_pred             CcccccchH-----HhhcccccEEEEcCcc
Q 036689          458 LTNLVASSA-----AQSLVALVKMQVFGCR  482 (595)
Q Consensus       458 l~~~~~~~~-----~~~l~~L~~L~l~~c~  482 (595)
                      +.++-....     ...+++|++|++..++
T Consensus       283 i~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  283 IASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             cchhcCCCccchhhhcccccceeeecccCc
Confidence            444311111     2346778888877765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=7.6e-09  Score=96.71  Aligned_cols=69  Identities=17%  Similarity=0.272  Sum_probs=41.3

Q ss_pred             CcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcce
Q 036689           75 DAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQE  146 (595)
Q Consensus        75 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  146 (595)
                      ..+.+|+.|.+.+. .+..-.  ...+.+=.+|+.|+++.|+.+++....-++++|+.|.+|++++|....+
T Consensus       207 s~C~kLk~lSlEg~-~LdD~I--~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~  275 (419)
T KOG2120|consen  207 SQCSKLKNLSLEGL-RLDDPI--VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE  275 (419)
T ss_pred             HHHHhhhhcccccc-ccCcHH--HHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch
Confidence            34566666666664 343311  1114455667777777777777654445666777777777777765544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=3.2e-08  Score=92.59  Aligned_cols=187  Identities=16%  Similarity=0.132  Sum_probs=114.9

Q ss_pred             CccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcccccccc
Q 036689          106 ELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEV  185 (595)
Q Consensus       106 ~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  185 (595)
                      .||++||++ ..++.-....+++.|.+|+.|.+.|. .+.+-         +...+.+-.+|+.|+++.|+.++.+....
T Consensus       186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~---------I~~~iAkN~~L~~lnlsm~sG~t~n~~~l  254 (419)
T KOG2120|consen  186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGL-RLDDP---------IVNTIAKNSNLVRLNLSMCSGFTENALQL  254 (419)
T ss_pred             hhHHhhcch-hheeHHHHHHHHHHHHhhhhcccccc-ccCcH---------HHHHHhccccceeeccccccccchhHHHH
Confidence            588888887 45655444466777888888888773 32221         11245566788888888888777654322


Q ss_pred             ccccccccccccccCccccccccccCCCccccccccCCccceeeccccc-ceeecccCCCccccccCCCccEEEEecCCC
Q 036689          186 KKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVN-IEKIWHNQLPVAMFLCFQNLTRLILRKCPK  264 (595)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~  264 (595)
                                                   ++   .+++.|..|++++|. .++... ..-.   .--++|+.|+++||..
T Consensus       255 -----------------------------l~---~scs~L~~LNlsWc~l~~~~Vt-v~V~---hise~l~~LNlsG~rr  298 (419)
T KOG2120|consen  255 -----------------------------LL---SSCSRLDELNLSWCFLFTEKVT-VAVA---HISETLTQLNLSGYRR  298 (419)
T ss_pred             -----------------------------HH---HhhhhHhhcCchHhhccchhhh-HHHh---hhchhhhhhhhhhhHh
Confidence                                         11   257788888888883 333311 1111   2257888888888743


Q ss_pred             C-ccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceee
Q 036689          265 L-KYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLD  343 (595)
Q Consensus       265 l-~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~  343 (595)
                      - ..--.......+|+|.+|+++.|..++.-...++..        |+.|++|.++.|..+..--. ......|+|.+|+
T Consensus       299 nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k--------f~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLd  369 (419)
T KOG2120|consen  299 NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK--------FNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLD  369 (419)
T ss_pred             hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh--------cchheeeehhhhcCCChHHe-eeeccCcceEEEE
Confidence            2 111112245778888889888887665533323332        88888888888876532111 1122368888888


Q ss_pred             ecCCC
Q 036689          344 VSACD  348 (595)
Q Consensus       344 l~~c~  348 (595)
                      +.+|-
T Consensus       370 v~g~v  374 (419)
T KOG2120|consen  370 VFGCV  374 (419)
T ss_pred             ecccc
Confidence            88773

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.23  E-value=7.5e-07  Score=79.90  Aligned_cols=132  Identities=17%  Similarity=0.201  Sum_probs=50.8

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      ...++++|+|.++....  ...+. ..+.+|++|++++| +++.+.       ....++.|++|+++++ .++.+..   
T Consensus        17 n~~~~~~L~L~~n~I~~--Ie~L~-~~l~~L~~L~Ls~N-~I~~l~-------~l~~L~~L~~L~L~~N-~I~~i~~---   81 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST--IENLG-ATLDKLEVLDLSNN-QITKLE-------GLPGLPRLKTLDLSNN-RISSISE---   81 (175)
T ss_dssp             ---------------------S---TT-TT--EEE-TTS---S--T-------T----TT--EEE--SS----S-CH---
T ss_pred             ccccccccccccccccc--ccchh-hhhcCCCEEECCCC-CCcccc-------CccChhhhhhcccCCC-CCCcccc---
Confidence            44568999999998732  23341 36889999999998 788773       3556899999999995 7776521   


Q ss_pred             cc-cCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccc-ccccccccceEecCCC
Q 036689          100 SV-QSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDH-QKIEFGQLSTLCLGSL  175 (595)
Q Consensus       100 ~~-~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~  175 (595)
                      .+ ..+|+|++|++++ +++.++.....++.+++|++|++.+++-... .       .-+. -+..+|+|+.|+-...
T Consensus        82 ~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~-------~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK-K-------NYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             HHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS-T-------THHHHHHHH-TT-SEETTEET
T ss_pred             chHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccch-h-------hHHHHHHHHcChhheeCCEEc
Confidence            12 3589999999998 6777765556778899999999998664321 0       1111 2456788998875543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.23  E-value=4.1e-08  Score=105.25  Aligned_cols=123  Identities=20%  Similarity=0.147  Sum_probs=71.7

Q ss_pred             cCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecc-cccceecccccCCCCCCCCcCCCcccEEeecCCCCccccc
Q 036689          250 CFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYC-KGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLY  328 (595)
Q Consensus       250 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~  328 (595)
                      .+++|+.+.+.+|..+.+......+..+++|+.|++++| ......+....     .....+++|+.|+++.+..+.+..
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~~~~L~~l~l~~~~~isd~~  260 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLL-----LLLSICRKLKSLDLSGCGLVTDIG  260 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhh-----hhhhhcCCcCccchhhhhccCchh
Confidence            367777777777777666332334567777888887763 22222211000     011126777788887777655554


Q ss_pred             CCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCee
Q 036689          329 PGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRM  399 (595)
Q Consensus       329 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~  399 (595)
                      .......|++|+.|.+.+|..++....                      ..+...+++|++|++++|..++
T Consensus       261 l~~l~~~c~~L~~L~l~~c~~lt~~gl----------------------~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLSNCSNLTDEGL----------------------VSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             HHHHHhhCCCcceEccCCCCccchhHH----------------------HHHHHhcCcccEEeeecCccch
Confidence            443444477888888777766443211                      1223467778888888777653

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.13  E-value=9e-06  Score=82.01  Aligned_cols=39  Identities=18%  Similarity=0.270  Sum_probs=19.1

Q ss_pred             cccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccc
Q 036689          312 QVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFD  354 (595)
Q Consensus       312 ~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  354 (595)
                      +|++|.+.+|..+..++...    .++|+.|.+.+|..+..+|
T Consensus        73 sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             CCcEEEccCCCCcccCCchh----hhhhhheEccCcccccccc
Confidence            45555555555554443221    2455556555555444333

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.11  E-value=2.3e-06  Score=76.76  Aligned_cols=110  Identities=23%  Similarity=0.352  Sum_probs=35.9

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      .....+++|+|.++ .++.+. .     ....+.+|++|+++++ .++.+.    .+..+++|++|++++ +.++++.. 
T Consensus        16 ~n~~~~~~L~L~~n-~I~~Ie-~-----L~~~l~~L~~L~Ls~N-~I~~l~----~l~~L~~L~~L~L~~-N~I~~i~~-   81 (175)
T PF14580_consen   16 NNPVKLRELNLRGN-QISTIE-N-----LGATLDKLEVLDLSNN-QITKLE----GLPGLPRLKTLDLSN-NRISSISE-   81 (175)
T ss_dssp             ----------------------S-------TT-TT--EEE-TTS---S--T----T----TT--EEE--S-S---S-CH-
T ss_pred             cccccccccccccc-cccccc-c-----hhhhhcCCCEEECCCC-CCcccc----CccChhhhhhcccCC-CCCCcccc-
Confidence            34556888999888 777662 1     2235788899999985 677652    256788899999988 67777642 


Q ss_pred             hhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCC
Q 036689          125 SAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPE  177 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  177 (595)
                      .....+++|++|++++ +.+..+...        .....+++|+.|++.+.+-
T Consensus        82 ~l~~~lp~L~~L~L~~-N~I~~l~~l--------~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSN-NKISDLNEL--------EPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             HHHHH-TT--EEE-TT-S---SCCCC--------GGGGG-TT--EEE-TT-GG
T ss_pred             chHHhCCcCCEEECcC-CcCCChHHh--------HHHHcCCCcceeeccCCcc
Confidence            2334688999999887 555544211        2344578888998887664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.10  E-value=2.8e-07  Score=98.82  Aligned_cols=66  Identities=24%  Similarity=0.326  Sum_probs=38.7

Q ss_pred             CCccceeecccc-cceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeeccccc
Q 036689          222 LSNLEVLEMNKV-NIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGL  291 (595)
Q Consensus       222 l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l  291 (595)
                      ++.|+.|+++++ .+++.+...+.    ..+++|+.|.+.+|..+++..-..++..++.|++|++++|..+
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~----~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALA----SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHH----hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            456666666666 34444222221    2366777777777766555444445566777777777777655

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.06  E-value=1.9e-06  Score=80.95  Aligned_cols=83  Identities=23%  Similarity=0.316  Sum_probs=40.0

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD  301 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  301 (595)
                      +++|+.|++++|.++.+     .-|- ..+.|++.|.+++ +.+.++   +.++.+-+|.+|++++++ +..+......+
T Consensus       328 L~~L~~LDLS~N~Ls~~-----~Gwh-~KLGNIKtL~La~-N~iE~L---SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG  396 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLAEC-----VGWH-LKLGNIKTLKLAQ-NKIETL---SGLRKLYSLVNLDLSSNQ-IEELDEVNHIG  396 (490)
T ss_pred             cccceEeecccchhHhh-----hhhH-hhhcCEeeeehhh-hhHhhh---hhhHhhhhheeccccccc-hhhHHHhcccc
Confidence            45555666666544433     1121 2355566666654 233332   234555566666666555 44443322222


Q ss_pred             CCCCCCcCCCcccEEeecCCC
Q 036689          302 DQVPPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       302 ~~~~~~~~l~~L~~L~L~~~~  322 (595)
                             .+|.|+.+.+.++|
T Consensus       397 -------~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  397 -------NLPCLETLRLTGNP  410 (490)
T ss_pred             -------cccHHHHHhhcCCC
Confidence                   25555555555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.96  E-value=1.9e-05  Score=57.83  Aligned_cols=58  Identities=34%  Similarity=0.396  Sum_probs=25.2

Q ss_pred             CccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEccc
Q 036689           79 ILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINC  141 (595)
Q Consensus        79 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  141 (595)
                      +|++|+++++ +++.+..+  .+..+++|++|++++ +.++.+++ ..+.++++|++|++++|
T Consensus         2 ~L~~L~l~~n-~l~~i~~~--~f~~l~~L~~L~l~~-N~l~~i~~-~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPPD--SFSNLPNLETLDLSN-NNLTSIPP-DAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSS-TESEECTT--TTTTGTTESEEEETS-SSESEEET-TTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCC-CCCccCHH--HHcCCCCCCEeEccC-CccCccCH-HHHcCCCCCCEEeCcCC
Confidence            3444444443 44443221  134445555555554 23443332 34444555555555443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.93  E-value=1.8e-05  Score=58.00  Aligned_cols=60  Identities=25%  Similarity=0.322  Sum_probs=48.4

Q ss_pred             CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCC
Q 036689           48 LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCD  116 (595)
Q Consensus        48 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~  116 (595)
                      |+|++|++++| .++.+++.     .+..+++|++|+++++ +++.+..+  .+..+++|++|++++|+
T Consensus         1 p~L~~L~l~~n-~l~~i~~~-----~f~~l~~L~~L~l~~N-~l~~i~~~--~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPD-----SFSNLPNLETLDLSNN-NLTSIPPD--AFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTT-----TTTTGTTESEEEETSS-SESEEETT--TTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHH-----HHcCCCCCCEeEccCC-ccCccCHH--HHcCCCCCCEEeCcCCc
Confidence            67899999998 88888655     6778899999999985 78777443  37889999999999863

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.92  E-value=7.9e-06  Score=76.89  Aligned_cols=229  Identities=18%  Similarity=0.157  Sum_probs=130.7

Q ss_pred             hhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC--CcccccCCCccccCcccceeeecCCCCcc
Q 036689          274 LGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP--ELKCLYPGMHTSEWPALKLLDVSACDQVT  351 (595)
Q Consensus       274 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~l~~~~~~~~~~~~~~L~~L~l~~c~~l~  351 (595)
                      +.-+..|++|.++....-.+-.- ....-.+.....|.+|+.+.++.|.  ++.++...     -|.|+++.+.+..- .
T Consensus       178 ldf~~~l~~l~vs~~~~p~~~sn-i~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~-----kptl~t~~v~~s~~-~  250 (490)
T KOG1259|consen  178 LDFCTQLVALVVTPVKDPIDRSN-IIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELL-----KPTLQTICVHNTTI-Q  250 (490)
T ss_pred             HHhhhheeEEEecCCCCCCcccc-ccccccccchHHhhhhheeeeeccchhheeceeec-----Cchhheeeeecccc-c
Confidence            34456677777665442111000 0000011223337788888888876  33333221     47888888765421 1


Q ss_pred             ccccccccccCCCCCCCC--CCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeecccccccccc
Q 036689          352 VFDSELFSFCESSEEDKP--DIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSS  429 (595)
Q Consensus       352 ~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~  429 (595)
                      ..|.-.+.  ......+.  ......+.......-+.|+++++++|....   .+.+....|.++.|++++         
T Consensus       251 ~~~~l~pe--~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~---iDESvKL~Pkir~L~lS~---------  316 (490)
T KOG1259|consen  251 DVPSLLPE--TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQ---IDESVKLAPKLRRLILSQ---------  316 (490)
T ss_pred             ccccccch--hhhcCccCCCCCccCCceEEecchHhhhhhccccccchhh---hhhhhhhccceeEEeccc---------
Confidence            11110000  00000000  111112222222334678899999986443   234566778999999854         


Q ss_pred             CccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCcccccccccccccccee
Q 036689          430 CDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLS  509 (595)
Q Consensus       430 ~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~  509 (595)
                       +.+..+.  .++.+++|+.|++++ +.+..+.  +|-..+-+.++|.+.++. ++++..- +        .+-+|..|+
T Consensus       317 -N~i~~v~--nLa~L~~L~~LDLS~-N~Ls~~~--Gwh~KLGNIKtL~La~N~-iE~LSGL-~--------KLYSLvnLD  380 (490)
T KOG1259|consen  317 -NRIRTVQ--NLAELPQLQLLDLSG-NLLAECV--GWHLKLGNIKTLKLAQNK-IETLSGL-R--------KLYSLVNLD  380 (490)
T ss_pred             -cceeeeh--hhhhcccceEeeccc-chhHhhh--hhHhhhcCEeeeehhhhh-Hhhhhhh-H--------hhhhheecc
Confidence             4455443  366788999999998 6666652  555677888999988775 6666421 1        266788888


Q ss_pred             ccccccccccccCcccccCCCccEEEEeCCC
Q 036689          510 LLDLDSLTSFCSGNYIFKFPSLEVLFVVGCP  540 (595)
Q Consensus       510 l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~  540 (595)
                      +++ ++++.+........+|.|+.+.+.+.|
T Consensus       381 l~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  381 LSS-NQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence            888 467767655555679999999998876

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.80  E-value=0.00011  Score=74.18  Aligned_cols=32  Identities=22%  Similarity=0.079  Sum_probs=23.5

Q ss_pred             ccccceeccccccccccccCcccccCCCccEEEEeCC
Q 036689          503 NKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGC  539 (595)
Q Consensus       503 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C  539 (595)
                      ++|+.|.+.+|..+. +|.+.    .++|+.|.+..+
T Consensus       156 sSLk~L~Is~c~~i~-LP~~L----P~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-LPEKL----PESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-Ccccc----cccCcEEEeccc
Confidence            579999999987553 44333    457999998765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.64  E-value=1.9e-05  Score=86.38  Aligned_cols=140  Identities=14%  Similarity=0.148  Sum_probs=94.3

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .-.+||+|++++...+..-.+...+..+|.|++|.+.+- .+    ..+++.....+||+|+.||++++ ++..+    .
T Consensus       120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~----~~~dF~~lc~sFpNL~sLDIS~T-nI~nl----~  189 (699)
T KOG3665|consen  120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QF----DNDDFSQLCASFPNLRSLDISGT-NISNL----S  189 (699)
T ss_pred             HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-ee----cchhHHHHhhccCccceeecCCC-CccCc----H
Confidence            346899999988766644444444578999999999875 22    23334446679999999999996 77776    3


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCC
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGS  174 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  174 (595)
                      +++.+++|+.|.+.+-+. ........+-++++|+.||++.-...... .....   -.+....+|+|+.|+.++
T Consensus       190 GIS~LknLq~L~mrnLe~-e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~q---Ylec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  190 GISRLKNLQVLSMRNLEF-ESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQ---YLECGMVLPELRFLDCSG  259 (699)
T ss_pred             HHhccccHHHHhccCCCC-CchhhHHHHhcccCCCeeeccccccccch-HHHHH---HHHhcccCccccEEecCC
Confidence            388999999999998644 33222255668999999999984333221 00000   001223378999998875

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=1.1e-05  Score=75.96  Aligned_cols=70  Identities=24%  Similarity=0.264  Sum_probs=40.6

Q ss_pred             CCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccC
Q 036689          251 FQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYP  329 (595)
Q Consensus       251 l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~  329 (595)
                      ||++..+.+..|+ +++.........+|.+-.|.++.++ +.+....+...       .||.|..|++...|-+..+..
T Consensus       198 Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~Ln-------~f~~l~dlRv~~~Pl~d~l~~  267 (418)
T KOG2982|consen  198 FPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDALN-------GFPQLVDLRVSENPLSDPLRG  267 (418)
T ss_pred             cccchheeeecCc-ccchhhcccCCCCCcchhhhhcccc-cccHHHHHHHc-------CCchhheeeccCCcccccccC
Confidence            6777777776663 4444444444566666666666555 55443322222       277888888877776554433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.50  E-value=6.3e-06  Score=84.17  Aligned_cols=197  Identities=20%  Similarity=0.206  Sum_probs=109.7

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+..-...+++.+.. ..++.++  ..|-.|+.|.|..+ -+..++.      ....+..|..|+|+.+ .+..+   +.
T Consensus        73 ~ltdt~~aDlsrNR~-~elp~~~--~~f~~Le~liLy~n-~~r~ip~------~i~~L~~lt~l~ls~N-qlS~l---p~  138 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRF-SELPEEA--CAFVSLESLILYHN-CIRTIPE------AICNLEALTFLDLSSN-QLSHL---PD  138 (722)
T ss_pred             cccchhhhhcccccc-ccCchHH--HHHHHHHHHHHHhc-cceecch------hhhhhhHHHHhhhccc-hhhcC---Ch
Confidence            566666777777766 4555555  66777777777666 5665532      2445566666666663 44444   32


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT  179 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  179 (595)
                      .+..+| |+.|-+++ ++++.+|  ..++.++.|..|+.+.| .+..++.          +.+.+..|+.|.+.... +.
T Consensus       139 ~lC~lp-Lkvli~sN-Nkl~~lp--~~ig~~~tl~~ld~s~n-ei~slps----------ql~~l~slr~l~vrRn~-l~  202 (722)
T KOG0532|consen  139 GLCDLP-LKVLIVSN-NKLTSLP--EEIGLLPTLAHLDVSKN-EIQSLPS----------QLGYLTSLRDLNVRRNH-LE  202 (722)
T ss_pred             hhhcCc-ceeEEEec-CccccCC--cccccchhHHHhhhhhh-hhhhchH----------HhhhHHHHHHHHHhhhh-hh
Confidence            344444 77777777 5677666  44556777777777653 3444332          23334444444443321 11


Q ss_pred             ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689          180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL  259 (595)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L  259 (595)
                      .++.+                                  +. .-.|..||++.|++..+     |..+ ..+..|++|-|
T Consensus       203 ~lp~E----------------------------------l~-~LpLi~lDfScNkis~i-----Pv~f-r~m~~Lq~l~L  241 (722)
T KOG0532|consen  203 DLPEE----------------------------------LC-SLPLIRLDFSCNKISYL-----PVDF-RKMRHLQVLQL  241 (722)
T ss_pred             hCCHH----------------------------------Hh-CCceeeeecccCceeec-----chhh-hhhhhheeeee
Confidence            11110                                  11 22466778877777777     7665 56777777777


Q ss_pred             ecCCCCccccchhh--hhccCCCcEEEeeccc
Q 036689          260 RKCPKLKYIFSASM--LGSFEHLQHLEIRYCK  289 (595)
Q Consensus       260 ~~c~~l~~l~~~~~--~~~l~~L~~L~l~~c~  289 (595)
                      .+ +-++. +|..+  -+..-=.|+|++.-|+
T Consensus       242 en-NPLqS-PPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  242 EN-NPLQS-PPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             cc-CCCCC-ChHHHHhccceeeeeeecchhcc
Confidence            74 45554 34321  1222235667776664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.47  E-value=0.00015  Score=75.62  Aligned_cols=82  Identities=23%  Similarity=0.329  Sum_probs=43.1

Q ss_pred             CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689          223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD  302 (595)
Q Consensus       223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  302 (595)
                      ..|+++.++++.....     +..+ ..+.++..+.+.+ ..+...  ...++.++.+++|+++++. +++++.  ..  
T Consensus       209 ~~L~~l~~~~N~~~~~-----~~~~-~~~~~l~~l~l~~-n~~~~~--~~~~~~l~~l~~L~~s~n~-i~~i~~--~~--  274 (394)
T COG4886         209 SALEELDLSNNSIIEL-----LSSL-SNLKNLSGLELSN-NKLEDL--PESIGNLSNLETLDLSNNQ-ISSISS--LG--  274 (394)
T ss_pred             hhhhhhhhcCCcceec-----chhh-hhcccccccccCC-ceeeec--cchhccccccceecccccc-cccccc--cc--
Confidence            3466666666632211     2211 3455555555443 233321  1234667777777777776 666644  11  


Q ss_pred             CCCCCcCCCcccEEeecCCCCc
Q 036689          303 QVPPNFVFPQVTILRLVGLPEL  324 (595)
Q Consensus       303 ~~~~~~~l~~L~~L~L~~~~~l  324 (595)
                            .+.+|+.|++++....
T Consensus       275 ------~~~~l~~L~~s~n~~~  290 (394)
T COG4886         275 ------SLTNLRELDLSGNSLS  290 (394)
T ss_pred             ------ccCccCEEeccCcccc
Confidence                  1667777777774433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.32  E-value=2e-05  Score=76.04  Aligned_cols=244  Identities=21%  Similarity=0.131  Sum_probs=133.0

Q ss_pred             eecccccccccC-c----ccccccccccEEEeccCCCCc---ccccccc-----ccccCCCcEEEcccCC-CceEecCCC
Q 036689            3 TLKLKFNSVSIC-S----KKLQGIKDVEYLCLDKSQDVK---NVLFDLD-----REGFLQLKHLHVQNNP-DFMCIVDSK   68 (595)
Q Consensus         3 ~l~l~~~~~~~~-~----~~~~~l~~L~~L~L~~~~~~~---~~~~~~~-----~~~l~~L~~L~L~~~~-~l~~i~~~~   68 (595)
                      .|+|++|++..- .    +.+...++|+..+++++---.   .++..+.     ..++|+|++|+|+.|. +.+.+.   
T Consensus        34 ~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~---  110 (382)
T KOG1909|consen   34 KLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR---  110 (382)
T ss_pred             EEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH---
Confidence            467777876544 3    334456678888887664311   1221110     1567899999999883 111110   


Q ss_pred             CCCCcCCcCCCccEEeccCccCcccccc-----------ccccccCCCCccEEEecCCCCcccccc---hhhhhcCCCCc
Q 036689           69 ERVPLDDAFPILESLNLYNLIKLERICQ-----------DRLSVQSFNELKTIRVELCDQLSNIFL---LSAAKCLPRLE  134 (595)
Q Consensus        69 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~-----------~~~~~~~l~~L~~L~L~~c~~l~~~~~---~~~~~~l~~L~  134 (595)
                      .+.....++..|++|.+.+| .+....-           ....+.+-++||++...+ +.+.+.+.   ...++..+.|+
T Consensus       111 ~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  111 GLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             HHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccccc
Confidence            01113456788999999998 3322100           011134567899999988 56665432   24556678899


Q ss_pred             EEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCc
Q 036689          135 RIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSP  214 (595)
Q Consensus       135 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (595)
                      ++.+..+..-..     +  .                                                         .-
T Consensus       189 evr~~qN~I~~e-----G--~---------------------------------------------------------~a  204 (382)
T KOG1909|consen  189 EVRLSQNGIRPE-----G--V---------------------------------------------------------TA  204 (382)
T ss_pred             eEEEecccccCc-----h--h---------------------------------------------------------HH
Confidence            998877432111     0  0                                                         00


Q ss_pred             cccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccc----hhhhhccCCCcEEEeecccc
Q 036689          215 LFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFS----ASMLGSFEHLQHLEIRYCKG  290 (595)
Q Consensus       215 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~----~~~~~~l~~L~~L~l~~c~~  290 (595)
                      ++.+...+++|++|++..|-++.-+...+...+ ..+++|+.|++++|. ++.--.    -.+-...|.|+.|.+.+|. 
T Consensus       205 l~eal~~~~~LevLdl~DNtft~egs~~LakaL-~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe-  281 (382)
T KOG1909|consen  205 LAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL-SSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE-  281 (382)
T ss_pred             HHHHHHhCCcceeeecccchhhhHHHHHHHHHh-cccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch-
Confidence            122233577777777777755543322211111 345788888888873 322111    1122446788888888876 


Q ss_pred             cceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689          291 LQEIISKEGADDQVPPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  322 (595)
                      ++.-......    ......|.|..|+|++|.
T Consensus       282 It~da~~~la----~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  282 ITRDAALALA----ACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             hHHHHHHHHH----HHHhcchhhHHhcCCccc
Confidence            5432211000    011116788888888854

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=7.6e-05  Score=70.44  Aligned_cols=167  Identities=20%  Similarity=0.200  Sum_probs=90.8

Q ss_pred             ccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceeccccc
Q 036689          220 VALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEG  299 (595)
Q Consensus       220 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  299 (595)
                      .++|.|++|+++.|++....+ ..|    ....+|+.|-+.+. .+.--...+++..+|.+++|.++.+. +..+-..+.
T Consensus        94 e~lP~l~~LNls~N~L~s~I~-~lp----~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~  166 (418)
T KOG2982|consen   94 EQLPALTTLNLSCNSLSSDIK-SLP----LPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDN  166 (418)
T ss_pred             hcCccceEeeccCCcCCCccc-cCc----ccccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccch-hhhhccccc
Confidence            357888888888886653211 122    13678999888763 33322233356788889999888774 333222111


Q ss_pred             CCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCC
Q 036689          300 ADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFL  379 (595)
Q Consensus       300 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  379 (595)
                      ..+     .--+.+++|.+.+|+...-.........||++..+.+..||--+.-..                       .
T Consensus       167 c~e-----~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e-----------------------k  218 (418)
T KOG2982|consen  167 CIE-----DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE-----------------------K  218 (418)
T ss_pred             ccc-----ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc-----------------------c
Confidence            110     013567777777775321111111122389999999988864221111                       1


Q ss_pred             cCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccc
Q 036689          380 PEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDA  422 (595)
Q Consensus       380 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~  422 (595)
                      ....++.+..|++..++.. .|+.......+++|+.|.+.+.|
T Consensus       219 ~se~~p~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  219 GSEPFPSLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             cCCCCCcchhhhhcccccc-cHHHHHHHcCCchhheeeccCCc
Confidence            1234555556666554432 33333344466777777776554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.25  E-value=0.0003  Score=73.36  Aligned_cols=106  Identities=26%  Similarity=0.378  Sum_probs=70.4

Q ss_pred             CCccceeecccccceeecccCCCccccccCC-CccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQ-NLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~-~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  300 (595)
                      .+.++.|++.+++++++     +... ..+. +|+.|++++ +.+..++  ..++.+++|+.|++++++ +.+++.... 
T Consensus       115 ~~~l~~L~l~~n~i~~i-----~~~~-~~~~~nL~~L~l~~-N~i~~l~--~~~~~l~~L~~L~l~~N~-l~~l~~~~~-  183 (394)
T COG4886         115 LTNLTSLDLDNNNITDI-----PPLI-GLLKSNLKELDLSD-NKIESLP--SPLRNLPNLKNLDLSFND-LSDLPKLLS-  183 (394)
T ss_pred             ccceeEEecCCcccccC-----cccc-ccchhhcccccccc-cchhhhh--hhhhccccccccccCCch-hhhhhhhhh-
Confidence            46788888888877777     5443 2343 888888886 4566543  125788889999988888 777765221 


Q ss_pred             CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCC
Q 036689          301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQ  349 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~  349 (595)
                              ..+.|+.|++++ ..+..++....  ....|+++.+.+.+.
T Consensus       184 --------~~~~L~~L~ls~-N~i~~l~~~~~--~~~~L~~l~~~~N~~  221 (394)
T COG4886         184 --------NLSNLNNLDLSG-NKISDLPPEIE--LLSALEELDLSNNSI  221 (394)
T ss_pred             --------hhhhhhheeccC-CccccCchhhh--hhhhhhhhhhcCCcc
Confidence                    267888888888 44666554311  134477777777653

>PLN03150 hypothetical protein; Provisional

Probab=97.14  E-value=0.00087  Score=73.68  Aligned_cols=89  Identities=12%  Similarity=0.081  Sum_probs=53.2

Q ss_pred             CCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhh
Q 036689           49 QLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAK  128 (595)
Q Consensus        49 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~  128 (595)
                      .+..|+|.++ ++....+.     .+..+++|+.|+|+++ .+...  .+..++.+++|+.|++++| .+....+ ..++
T Consensus       419 ~v~~L~L~~n-~L~g~ip~-----~i~~L~~L~~L~Ls~N-~l~g~--iP~~~~~l~~L~~LdLs~N-~lsg~iP-~~l~  487 (623)
T PLN03150        419 FIDGLGLDNQ-GLRGFIPN-----DISKLRHLQSINLSGN-SIRGN--IPPSLGSITSLEVLDLSYN-SFNGSIP-ESLG  487 (623)
T ss_pred             EEEEEECCCC-CccccCCH-----HHhCCCCCCEEECCCC-cccCc--CChHHhCCCCCCEEECCCC-CCCCCCc-hHHh
Confidence            3666777766 45433232     3456677777777775 44422  1223667777777777774 4554333 5667


Q ss_pred             cCCCCcEEEEcccCCcceee
Q 036689          129 CLPRLERIAVINCRNIQEIF  148 (595)
Q Consensus       129 ~l~~L~~L~l~~c~~l~~~~  148 (595)
                      ++++|++|++++|.....+|
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP  507 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVP  507 (623)
T ss_pred             cCCCCCEEECcCCcccccCC
Confidence            77777777777765544554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.12  E-value=3.5e-05  Score=78.89  Aligned_cols=178  Identities=15%  Similarity=0.159  Sum_probs=118.2

Q ss_pred             cccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccc
Q 036689           15 SKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERI   94 (595)
Q Consensus        15 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~   94 (595)
                      |..+..|..|+.|.|+.|.. ..++..+  ..+..|.+|+|+.+ ++..+++.       -++-=|+.|.++++ +++.+
T Consensus        91 p~~~~~f~~Le~liLy~n~~-r~ip~~i--~~L~~lt~l~ls~N-qlS~lp~~-------lC~lpLkvli~sNN-kl~~l  158 (722)
T KOG0532|consen   91 PEEACAFVSLESLILYHNCI-RTIPEAI--CNLEALTFLDLSSN-QLSHLPDG-------LCDLPLKVLIVSNN-KLTSL  158 (722)
T ss_pred             chHHHHHHHHHHHHHHhccc-eecchhh--hhhhHHHHhhhccc-hhhcCChh-------hhcCcceeEEEecC-ccccC
Confidence            54455778888888887776 4555555  78888888999887 67766432       23344888888884 77766


Q ss_pred             ccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCC
Q 036689           95 CQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGS  174 (595)
Q Consensus        95 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  174 (595)
                         +..++..+.|..|+.+.| .+..++  +.++.+.+|+.|.++. +.+..+|...+           .-.|..|+++ 
T Consensus       159 ---p~~ig~~~tl~~ld~s~n-ei~slp--sql~~l~slr~l~vrR-n~l~~lp~El~-----------~LpLi~lDfS-  219 (722)
T KOG0532|consen  159 ---PEEIGLLPTLAHLDVSKN-EIQSLP--SQLGYLTSLRDLNVRR-NHLEDLPEELC-----------SLPLIRLDFS-  219 (722)
T ss_pred             ---CcccccchhHHHhhhhhh-hhhhch--HHhhhHHHHHHHHHhh-hhhhhCCHHHh-----------CCceeeeecc-
Confidence               455788888999999885 556566  6778888899998888 45555553321           2335566654 


Q ss_pred             CCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCcccc--ccCC
Q 036689          175 LPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMF--LCFQ  252 (595)
Q Consensus       175 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~--~~l~  252 (595)
                      |.++..++..                               |   ..|+.|++|.|.+|.++.=     |..++  +...
T Consensus       220 cNkis~iPv~-------------------------------f---r~m~~Lq~l~LenNPLqSP-----PAqIC~kGkVH  260 (722)
T KOG0532|consen  220 CNKISYLPVD-------------------------------F---RKMRHLQVLQLENNPLQSP-----PAQICEKGKVH  260 (722)
T ss_pred             cCceeecchh-------------------------------h---hhhhhheeeeeccCCCCCC-----hHHHHhcccee
Confidence            5556555542                               2   2588999999999977643     44431  1122


Q ss_pred             CccEEEEecC
Q 036689          253 NLTRLILRKC  262 (595)
Q Consensus       253 ~L~~L~L~~c  262 (595)
                      =.++|++.-|
T Consensus       261 IFKyL~~qA~  270 (722)
T KOG0532|consen  261 IFKYLSTQAC  270 (722)
T ss_pred             eeeeecchhc
Confidence            2455666666

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.10  E-value=0.00016  Score=79.44  Aligned_cols=37  Identities=16%  Similarity=0.118  Sum_probs=17.9

Q ss_pred             cCCCccEEEEecCCCCccccchhhhhccCCCcEEEeec
Q 036689          250 CFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRY  287 (595)
Q Consensus       250 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~  287 (595)
                      .+|+|+.||.++. .+....-...+..-|+|+.+.+.+
T Consensus       248 ~LpeLrfLDcSgT-di~~~~le~ll~sH~~L~~i~~~~  284 (699)
T KOG3665|consen  248 VLPELRFLDCSGT-DINEEILEELLNSHPNLQQIAALD  284 (699)
T ss_pred             cCccccEEecCCc-chhHHHHHHHHHhCccHhhhhhhh
Confidence            3566666666653 333322223344445555554443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.81  E-value=6.7e-05  Score=78.99  Aligned_cols=36  Identities=14%  Similarity=0.420  Sum_probs=20.3

Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcc
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN  140 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~  140 (595)
                      ..-++.|+.|+|+. ++++.+   ..+..|+.|++|||+.
T Consensus       183 Lqll~ale~LnLsh-Nk~~~v---~~Lr~l~~LkhLDlsy  218 (1096)
T KOG1859|consen  183 LQLLPALESLNLSH-NKFTKV---DNLRRLPKLKHLDLSY  218 (1096)
T ss_pred             HHHHHHhhhhccch-hhhhhh---HHHHhccccccccccc
Confidence            34455666666666 455544   4555566666666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.62  E-value=8.4e-05  Score=71.81  Aligned_cols=124  Identities=18%  Similarity=0.079  Sum_probs=80.5

Q ss_pred             ccccccccccEEEeccCCCCccccccc--cccccCCCcEEEcccCCCceEecCCCC---------CCCcCCcCCCccEEe
Q 036689           16 KKLQGIKDVEYLCLDKSQDVKNVLFDL--DREGFLQLKHLHVQNNPDFMCIVDSKE---------RVPLDDAFPILESLN   84 (595)
Q Consensus        16 ~~~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~l~~i~~~~~---------~~~~~~~~~~L~~L~   84 (595)
                      +++...++|++|+|++|..-..-++.+  ....+..|++|.|.|| ++.-.... .         ...-..+-++|++++
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~-~l~~al~~l~~~kk~~~~~~Lrv~i  163 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGG-RLGRALFELAVNKKAASKPKLRVFI  163 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHH-HHHHHHHHHHHHhccCCCcceEEEE
Confidence            344456699999999998754443333  2367999999999999 66533111 1         001233457899999


Q ss_pred             ccCccCccccccc--cccccCCCCccEEEecCCCCcccc---cchhhhhcCCCCcEEEEcccCC
Q 036689           85 LYNLIKLERICQD--RLSVQSFNELKTIRVELCDQLSNI---FLLSAAKCLPRLERIAVINCRN  143 (595)
Q Consensus        85 l~~~~~l~~~~~~--~~~~~~l~~L~~L~L~~c~~l~~~---~~~~~~~~l~~L~~L~l~~c~~  143 (595)
                      ..++ .++.-...  ...+...+.|+.+.+... .+..-   .....+..|++|++|+++++..
T Consensus       164 ~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtf  225 (382)
T KOG1909|consen  164 CGRN-RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTF  225 (382)
T ss_pred             eecc-ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchh
Confidence            9985 55542110  111456689999999984 44321   1225677899999999999554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.58  E-value=0.0027  Score=57.02  Aligned_cols=110  Identities=21%  Similarity=0.191  Sum_probs=81.2

Q ss_pred             cc-ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccc
Q 036689           18 LQ-GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ   96 (595)
Q Consensus        18 ~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   96 (595)
                      ++ ..+....++|.++.....  ..+  ..+++|.+|.|.+| .|+.|.+.     ....+|+|.+|.+.++ ++.++. 
T Consensus        37 lg~~~d~~d~iDLtdNdl~~l--~~l--p~l~rL~tLll~nN-rIt~I~p~-----L~~~~p~l~~L~LtnN-si~~l~-  104 (233)
T KOG1644|consen   37 LGATLDQFDAIDLTDNDLRKL--DNL--PHLPRLHTLLLNNN-RITRIDPD-----LDTFLPNLKTLILTNN-SIQELG-  104 (233)
T ss_pred             ccccccccceecccccchhhc--ccC--CCccccceEEecCC-cceeeccc-----hhhhccccceEEecCc-chhhhh-
Confidence            55 677888999998877443  233  67999999999888 89988554     4567899999999995 666652 


Q ss_pred             ccccccCCCCccEEEecCCCCccccc--chhhhhcCCCCcEEEEcc
Q 036689           97 DRLSVQSFNELKTIRVELCDQLSNIF--LLSAAKCLPRLERIAVIN  140 (595)
Q Consensus        97 ~~~~~~~l~~L~~L~L~~c~~l~~~~--~~~~~~~l~~L~~L~l~~  140 (595)
                      +..+...||.|++|.+-+. .++...  -..++..+|+|+.||+.+
T Consensus       105 dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  105 DLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             hcchhccCCccceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence            2334678999999999884 333321  014566899999999876

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.54  E-value=0.0044  Score=55.66  Aligned_cols=112  Identities=20%  Similarity=0.203  Sum_probs=74.4

Q ss_pred             cCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhh
Q 036689           47 FLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSA  126 (595)
Q Consensus        47 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~  126 (595)
                      .-+...++|+++ ++..+.       .+..++.|.+|.+.++ ++..+..+-  ...+|+|+.|.+.+ +.+..+.....
T Consensus        41 ~d~~d~iDLtdN-dl~~l~-------~lp~l~rL~tLll~nN-rIt~I~p~L--~~~~p~l~~L~Ltn-Nsi~~l~dl~p  108 (233)
T KOG1644|consen   41 LDQFDAIDLTDN-DLRKLD-------NLPHLPRLHTLLLNNN-RITRIDPDL--DTFLPNLKTLILTN-NSIQELGDLDP  108 (233)
T ss_pred             ccccceeccccc-chhhcc-------cCCCccccceEEecCC-cceeeccch--hhhccccceEEecC-cchhhhhhcch
Confidence            446667888887 555442       4567888999999984 777774331  34568899999998 56666554466


Q ss_pred             hhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCC
Q 036689          127 AKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPE  177 (595)
Q Consensus       127 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  177 (595)
                      +..|+.|++|.+-+++--.. . .+..+     -+.++++|+.|+..+-..
T Consensus       109 La~~p~L~~Ltll~Npv~~k-~-~YR~y-----vl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  109 LASCPKLEYLTLLGNPVEHK-K-NYRLY-----VLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             hccCCccceeeecCCchhcc-c-CceeE-----EEEecCcceEeehhhhhH
Confidence            67899999998887443221 0 00000     245688999998877553

>PLN03150 hypothetical protein; Provisional

Probab=96.53  E-value=0.0036  Score=68.90  Aligned_cols=113  Identities=14%  Similarity=0.084  Sum_probs=82.1

Q ss_pred             cccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccccc
Q 036689           23 DVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQ  102 (595)
Q Consensus        23 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  102 (595)
                      .++.|+|.++.....++..+  +.+++|+.|+|++| .+....+.     .+..+++|+.|+++++ ++...  .+..++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i--~~L~~L~~L~Ls~N-~l~g~iP~-----~~~~l~~L~~LdLs~N-~lsg~--iP~~l~  487 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDI--SKLRHLQSINLSGN-SIRGNIPP-----SLGSITSLEVLDLSYN-SFNGS--IPESLG  487 (623)
T ss_pred             EEEEEECCCCCccccCCHHH--hCCCCCCEEECCCC-cccCcCCh-----HHhCCCCCCEEECCCC-CCCCC--CchHHh
Confidence            47889999988766666665  89999999999998 56533233     4678899999999996 66543  244478


Q ss_pred             CCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCccee
Q 036689          103 SFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEI  147 (595)
Q Consensus       103 ~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~  147 (595)
                      .+++|+.|++++| .+....|........++..+++.++..+...
T Consensus       488 ~L~~L~~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        488 QLTSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             cCCCCCEEECcCC-cccccCChHHhhccccCceEEecCCccccCC
Confidence            9999999999996 5554444233333457788999887665543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.53  E-value=0.0053  Score=41.18  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=19.9

Q ss_pred             CCccEEEecCCCCcccccchhhhhcCCCCcEEEEccc
Q 036689          105 NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINC  141 (595)
Q Consensus       105 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  141 (595)
                      ++|++|++++ +.+++++  +.++++++|++|++++|
T Consensus         1 ~~L~~L~l~~-N~i~~l~--~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSN-NQITDLP--PELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETS-SS-SSHG--GHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccC-CCCcccC--chHhCCCCCCEEEecCC
Confidence            3566777776 3566554  33566777777777764

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.42  E-value=0.00058  Score=71.47  Aligned_cols=80  Identities=21%  Similarity=0.381  Sum_probs=47.8

Q ss_pred             ccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchh
Q 036689           46 GFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLS  125 (595)
Q Consensus        46 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~  125 (595)
                      .+..++.+.+..+ .+..+..      ....+.+|+.|++.+. +++.+...   +..+++|++|++++ +.++.+   .
T Consensus        70 ~l~~l~~l~l~~n-~i~~~~~------~l~~~~~l~~l~l~~n-~i~~i~~~---l~~~~~L~~L~ls~-N~I~~i---~  134 (414)
T KOG0531|consen   70 SLTSLKELNLRQN-LIAKILN------HLSKLKSLEALDLYDN-KIEKIENL---LSSLVNLQVLDLSF-NKITKL---E  134 (414)
T ss_pred             HhHhHHhhccchh-hhhhhhc------ccccccceeeeecccc-chhhcccc---hhhhhcchheeccc-cccccc---c
Confidence            4556666665554 3443211      2456677777777774 66665221   45677777777777 566665   4


Q ss_pred             hhhcCCCCcEEEEcc
Q 036689          126 AAKCLPRLERIAVIN  140 (595)
Q Consensus       126 ~~~~l~~L~~L~l~~  140 (595)
                      .+..++.|+.|++.+
T Consensus       135 ~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen  135 GLSTLTLLKELNLSG  149 (414)
T ss_pred             chhhccchhhheecc
Confidence            445566677777776

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.29  E-value=0.00014  Score=76.75  Aligned_cols=112  Identities=21%  Similarity=0.179  Sum_probs=84.8

Q ss_pred             cccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccc
Q 036689           15 SKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERI   94 (595)
Q Consensus        15 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~   94 (595)
                      .++++.++.+|.|+|++|+..+--  .+  ..|+.|++|+|+.| .++.++.-     ...++ +|..|.|+++ .++.+
T Consensus       180 D~SLqll~ale~LnLshNk~~~v~--~L--r~l~~LkhLDlsyN-~L~~vp~l-----~~~gc-~L~~L~lrnN-~l~tL  247 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTKVD--NL--RRLPKLKHLDLSYN-CLRHVPQL-----SMVGC-KLQLLNLRNN-ALTTL  247 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhhhH--HH--Hhcccccccccccc-hhcccccc-----chhhh-hheeeeeccc-HHHhh
Confidence            667788999999999999885322  33  78999999999988 67776422     12233 3999999995 67765


Q ss_pred             ccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCC
Q 036689           95 CQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRN  143 (595)
Q Consensus        95 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~  143 (595)
                       .+   +.++.+|+.||+++ +.+.+......+..+..|++|.+.|++.
T Consensus       248 -~g---ie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  248 -RG---IENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             -hh---HHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence             23   78899999999999 5676655445666788899999988653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.13  E-value=0.0065  Score=40.77  Aligned_cols=39  Identities=28%  Similarity=0.336  Sum_probs=24.2

Q ss_pred             ccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEe
Q 036689           22 KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCI   64 (595)
Q Consensus        22 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i   64 (595)
                      ++|++|+++++.. +++++.+  +.+++|++|++++| .++.+
T Consensus         1 ~~L~~L~l~~N~i-~~l~~~l--~~l~~L~~L~l~~N-~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQI-TDLPPEL--SNLPNLETLNLSNN-PISDI   39 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHG--TTCTTSSEEEETSS-CCSBE
T ss_pred             CcceEEEccCCCC-cccCchH--hCCCCCCEEEecCC-CCCCC
Confidence            4677777777766 3554445  67777777777777 45533

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.50  E-value=0.0015  Score=58.59  Aligned_cols=60  Identities=22%  Similarity=0.233  Sum_probs=41.6

Q ss_pred             cccccceeccccccccccccCcccccCCCccEEEEeCCCCccccC-CCCCCCCCcceEEec
Q 036689          502 FNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFT-TGELSTPPRVDVMYR  561 (595)
Q Consensus       502 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp-~~~~~~~~L~~l~i~  561 (595)
                      +++++.|.+.+|.++.+.+.+....-.|+|+.|++++|+++++.. ..+..+++|+.+.+.
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            667777777777777766655444457788888888888887653 334557777777776

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.15  E-value=0.0037  Score=58.87  Aligned_cols=101  Identities=20%  Similarity=0.240  Sum_probs=71.0

Q ss_pred             cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCc
Q 036689          444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGN  523 (595)
Q Consensus       444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  523 (595)
                      +.+.++|+.+|| +++++   ++...++.|++|.++-+. ++++..-         ..+++|+.|.|.. +.+.++.+-.
T Consensus        18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNk-IssL~pl---------~rCtrLkElYLRk-N~I~sldEL~   82 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNK-ISSLAPL---------QRCTRLKELYLRK-NCIESLDELE   82 (388)
T ss_pred             HHHhhhhcccCC-CccHH---HHHHhcccceeEEeeccc-cccchhH---------HHHHHHHHHHHHh-cccccHHHHH
Confidence            567888999997 57777   677889999999998765 5555321         1478999999988 4777777666


Q ss_pred             ccccCCCccEEEEeCCCCccccCC-----CCCCCCCcceEE
Q 036689          524 YIFKFPSLEVLFVVGCPKMNIFTT-----GELSTPPRVDVM  559 (595)
Q Consensus       524 ~~~~~~~L~~L~l~~C~~l~~lp~-----~~~~~~~L~~l~  559 (595)
                      +...+|+|+.|-+...|=-..-+.     -+.-+|+||+|+
T Consensus        83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            666789999998887553321111     112378888877

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.84  E-value=0.019  Score=53.81  Aligned_cols=89  Identities=19%  Similarity=0.254  Sum_probs=38.3

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      ..+.+|+.|.+.++ +++.+.       .+-.+|+|++|.++++ ......-......++|+|+++++++ ++++.+...
T Consensus        40 d~~~~le~ls~~n~-gltt~~-------~~P~Lp~LkkL~lsdn-~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl  109 (260)
T KOG2739|consen   40 DEFVELELLSVINV-GLTTLT-------NFPKLPKLKKLELSDN-YRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTL  109 (260)
T ss_pred             ccccchhhhhhhcc-ceeecc-------cCCCcchhhhhcccCC-cccccccceehhhhCCceeEEeecC-Ccccccccc
Confidence            34445555555554 333321       2334455555555553 1111100011123446666666665 344433222


Q ss_pred             hhhhcCCCCcEEEEcccCC
Q 036689          125 SAAKCLPRLERIAVINCRN  143 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c~~  143 (595)
                      ..+..+.+|..|++..|..
T Consensus       110 ~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  110 RPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             chhhhhcchhhhhcccCCc
Confidence            3344455555555555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.60  E-value=0.0016  Score=61.18  Aligned_cols=103  Identities=21%  Similarity=0.162  Sum_probs=70.1

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD  301 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  301 (595)
                      +.+.+.|+..+|.++++.     -  +..++.|+.|.|+- ++++.+.+   +..|+.|++|.++.+. |.++.......
T Consensus        18 l~~vkKLNcwg~~L~DIs-----i--c~kMp~lEVLsLSv-NkIssL~p---l~rCtrLkElYLRkN~-I~sldEL~YLk   85 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS-----I--CEKMPLLEVLSLSV-NKISSLAP---LQRCTRLKELYLRKNC-IESLDELEYLK   85 (388)
T ss_pred             HHHhhhhcccCCCccHHH-----H--HHhcccceeEEeec-cccccchh---HHHHHHHHHHHHHhcc-cccHHHHHHHh
Confidence            456778888888877762     1  14688999999984 57766654   4889999999998876 77664433322


Q ss_pred             CCCCCCcCCCcccEEeecCCCCcccccCCC---ccccCcccceee
Q 036689          302 DQVPPNFVFPQVTILRLVGLPELKCLYPGM---HTSEWPALKLLD  343 (595)
Q Consensus       302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~---~~~~~~~L~~L~  343 (595)
                             .+|+|+.|+|..+|.-..-+...   ....+|+|+.|+
T Consensus        86 -------nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   86 -------NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             -------cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence                   38999999999877654432221   122378888775

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.51  E-value=0.0092  Score=62.49  Aligned_cols=105  Identities=24%  Similarity=0.243  Sum_probs=67.3

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  300 (595)
                      .+.+|+.|++.++.+..+     ...+ .++++|++|++++ +.++.+.+   +..++.|+.|++.++. +..+....  
T Consensus        93 ~~~~l~~l~l~~n~i~~i-----~~~l-~~~~~L~~L~ls~-N~I~~i~~---l~~l~~L~~L~l~~N~-i~~~~~~~--  159 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKI-----ENLL-SSLVNLQVLDLSF-NKITKLEG---LSTLTLLKELNLSGNL-ISDISGLE--  159 (414)
T ss_pred             cccceeeeeccccchhhc-----ccch-hhhhcchheeccc-cccccccc---hhhccchhhheeccCc-chhccCCc--
Confidence            467888888888877766     2211 3578888888886 46665544   3667778888888887 76664311  


Q ss_pred             CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCC
Q 036689          301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACD  348 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~  348 (595)
                              .+++|+.+++.++. +..+.... ...+.+++.+.+.+..
T Consensus       160 --------~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  160 --------SLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNS  197 (414)
T ss_pred             --------cchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCc
Confidence                    16778888887743 33333310 1226777777776653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.26  E-value=0.0048  Score=55.46  Aligned_cols=68  Identities=16%  Similarity=0.188  Sum_probs=36.5

Q ss_pred             hhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCC
Q 036689          274 LGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQ  349 (595)
Q Consensus       274 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~  349 (595)
                      +..++.++.|.+.+|..+.+.......+       ..++|+.|++++|+++++.... ....+++|+.|.+.+.+.
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~-------~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGG-------LAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcc-------cccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCchh
Confidence            3455556666666666554433321111       1667777777777776654322 122366677776666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.18  E-value=0.026  Score=52.99  Aligned_cols=118  Identities=17%  Similarity=0.161  Sum_probs=76.2

Q ss_pred             ccccc-ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccc
Q 036689           15 SKKLQ-GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLER   93 (595)
Q Consensus        15 ~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~   93 (595)
                      ..|+. .+.+|+.|.+.++...+..  .+  ..+|+||.|.++.+. ....+   .........|+|++|+++++ ++..
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~--~~--P~Lp~LkkL~lsdn~-~~~~~---~l~vl~e~~P~l~~l~ls~N-ki~~  105 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLT--NF--PKLPKLKKLELSDNY-RRVSG---GLEVLAEKAPNLKVLNLSGN-KIKD  105 (260)
T ss_pred             cccccccccchhhhhhhccceeecc--cC--CCcchhhhhcccCCc-ccccc---cceehhhhCCceeEEeecCC-cccc
Confidence            45555 6788888888877764332  23  578999999998872 11110   11113345599999999995 5554


Q ss_pred             cccccccccCCCCccEEEecCCCCccc-ccchhhhhcCCCCcEEEEcccC
Q 036689           94 ICQDRLSVQSFNELKTIRVELCDQLSN-IFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus        94 ~~~~~~~~~~l~~L~~L~L~~c~~l~~-~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      +.. ..+...+++|..|++.+|+...- ..-...+.-+++|++|+-..+.
T Consensus       106 lst-l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  106 LST-LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             ccc-cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            321 22356788999999999953321 1122566778999999866543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=89.79  E-value=0.19  Score=27.88  Aligned_cols=20  Identities=20%  Similarity=0.198  Sum_probs=12.6

Q ss_pred             CccEEEEeCCCCccccCCCCC
Q 036689          530 SLEVLFVVGCPKMNIFTTGEL  550 (595)
Q Consensus       530 ~L~~L~l~~C~~l~~lp~~~~  550 (595)
                      +|++|++++| +++.+|.++.
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTT
T ss_pred             CccEEECCCC-cCEeCChhhc
Confidence            3667777776 6666666543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.78  E-value=0.22  Score=25.69  Aligned_cols=17  Identities=18%  Similarity=0.286  Sum_probs=7.8

Q ss_pred             CCccEEEEeCCCCccccC
Q 036689          529 PSLEVLFVVGCPKMNIFT  546 (595)
Q Consensus       529 ~~L~~L~l~~C~~l~~lp  546 (595)
                      ++|+.|++++|. ++.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            356666666664 55544

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.49  E-value=2.4  Score=35.75  Aligned_cols=103  Identities=9%  Similarity=0.116  Sum_probs=34.5

Q ss_pred             ccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccc
Q 036689          441 SVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFC  520 (595)
Q Consensus       441 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~  520 (595)
                      +..+++|+.+.+..  .++.+ ....+.++++|+.+.+.+.  ++.+......       ..++|+.+.+.+  .+..+.
T Consensus         8 F~~~~~l~~i~~~~--~~~~I-~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~-------~~~~l~~i~~~~--~~~~i~   73 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKI-GENAFSNCTSLKSINFPNN--LTSIGDNAFS-------NCKSLESITFPN--NLKSIG   73 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE--TTTTTT-TT-SEEEESST--TSCE-TTTTT-------T-TT-EEEEETS--TT-EE-
T ss_pred             HhCCCCCCEEEECC--CeeEe-Chhhccccccccccccccc--ccccceeeee-------cccccccccccc--cccccc
Confidence            33344555555542  23333 2223344455555555431  3343322222       233455555543  333343


Q ss_pred             cCcccccCCCccEEEEeCCCCccccCCC-CCCCCCcceEEec
Q 036689          521 SGNYIFKFPSLEVLFVVGCPKMNIFTTG-ELSTPPRVDVMYR  561 (595)
Q Consensus       521 ~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~i~  561 (595)
                      ...+. .++.|+.+.+..  ++..++.. ..++ .|+++.+.
T Consensus        74 ~~~F~-~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   74 DNAFS-NCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TTTTT-T-TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred             ccccc-ccccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence            33211 255555555532  34444332 2233 55555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=85.01  E-value=0.049  Score=46.00  Aligned_cols=103  Identities=17%  Similarity=0.304  Sum_probs=60.6

Q ss_pred             cccEEEeccCCCC--ccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689           23 DVEYLCLDKSQDV--KNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS  100 (595)
Q Consensus        23 ~L~~L~L~~~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  100 (595)
                      .+-.++|++|...  -+.+...  .+-.+|+..+|++| +++.+++.     +...||-++.|++.++ .+.+++.+   
T Consensus        28 E~h~ldLssc~lm~i~davy~l--~~~~el~~i~ls~N-~fk~fp~k-----ft~kf~t~t~lNl~~n-eisdvPeE---   95 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYML--SKGYELTKISLSDN-GFKKFPKK-----FTIKFPTATTLNLANN-EISDVPEE---   95 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHH--hCCceEEEEecccc-hhhhCCHH-----Hhhccchhhhhhcchh-hhhhchHH---
Confidence            3445555555442  1122222  45556777777777 66655433     4456677788888774 66666333   


Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcc
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN  140 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~  140 (595)
                      +..++.||.|+++. +.+...|  ..+..+.++-.|+..+
T Consensus        96 ~Aam~aLr~lNl~~-N~l~~~p--~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   96 LAAMPALRSLNLRF-NPLNAEP--RVIAPLIKLDMLDSPE  132 (177)
T ss_pred             HhhhHHhhhccccc-Cccccch--HHHHHHHhHHHhcCCC
Confidence            66778888888887 3444444  4444566666666555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=84.91  E-value=4.6  Score=33.97  Aligned_cols=81  Identities=20%  Similarity=0.162  Sum_probs=30.5

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      .++++|+.+.+.+  .++.+...     .+..+++|+.+++.+  .+..+..  ..+..+++|+.+.+.+  .+..+.. 
T Consensus         9 ~~~~~l~~i~~~~--~~~~I~~~-----~F~~~~~l~~i~~~~--~~~~i~~--~~F~~~~~l~~i~~~~--~~~~i~~-   74 (129)
T PF13306_consen    9 YNCSNLESITFPN--TIKKIGEN-----AFSNCTSLKSINFPN--NLTSIGD--NAFSNCKSLESITFPN--NLKSIGD-   74 (129)
T ss_dssp             TT-TT--EEEETS--T--EE-TT-----TTTT-TT-SEEEESS--TTSCE-T--TTTTT-TT-EEEEETS--TT-EE-T-
T ss_pred             hCCCCCCEEEECC--CeeEeChh-----hcccccccccccccc--cccccce--eeeecccccccccccc--ccccccc-
Confidence            4455555555542  34444322     344455555555554  2333321  1234444555555543  2222222 


Q ss_pred             hhhhcCCCCcEEEEc
Q 036689          125 SAAKCLPRLERIAVI  139 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~  139 (595)
                      ..+..+++|+.+.+.
T Consensus        75 ~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   75 NAFSNCTNLKNIDIP   89 (129)
T ss_dssp             TTTTT-TTECEEEET
T ss_pred             ccccccccccccccC
Confidence            344455555555554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.95  E-value=0.66  Score=26.89  Aligned_cols=18  Identities=11%  Similarity=0.407  Sum_probs=13.1

Q ss_pred             CCCccEEEecCCCCcccc
Q 036689          104 FNELKTIRVELCDQLSNI  121 (595)
Q Consensus       104 l~~L~~L~L~~c~~l~~~  121 (595)
                      +++|++|+|++|+.+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            467788888888777753

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.83  E-value=0.58  Score=27.12  Aligned_cols=17  Identities=29%  Similarity=0.563  Sum_probs=13.2

Q ss_pred             CCCccEEEEeCCCCccc
Q 036689          528 FPSLEVLFVVGCPKMNI  544 (595)
Q Consensus       528 ~~~L~~L~l~~C~~l~~  544 (595)
                      ||+|+.|++.+|+++++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            57788888888887764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=81.26  E-value=0.22  Score=42.19  Aligned_cols=68  Identities=10%  Similarity=0.047  Sum_probs=43.7

Q ss_pred             cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCc
Q 036689          444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGN  523 (595)
Q Consensus       444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  523 (595)
                      ...|+..++++ +.+++. +..+...++..+.|++.++. +.++|.....        .|.|+.|+++.. .+...+...
T Consensus        52 ~~el~~i~ls~-N~fk~f-p~kft~kf~t~t~lNl~~ne-isdvPeE~Aa--------m~aLr~lNl~~N-~l~~~p~vi  119 (177)
T KOG4579|consen   52 GYELTKISLSD-NGFKKF-PKKFTIKFPTATTLNLANNE-ISDVPEELAA--------MPALRSLNLRFN-PLNAEPRVI  119 (177)
T ss_pred             CceEEEEeccc-chhhhC-CHHHhhccchhhhhhcchhh-hhhchHHHhh--------hHHhhhcccccC-ccccchHHH
Confidence            34566777777 667765 44555666777777777765 7777765443        777888877774 454455433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	595
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 83/566 (14%), Positives = 152/566 (26%), Gaps = 177/566 (31%)

Query: 21  IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL 80
           + + +  C D     K++L   + +  +  K         F  ++  +E +     F + 
Sbjct: 30  VDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV--QKF-VE 84

Query: 81  ESLN-----LYNLIKLERI-----------CQDRL--SVQSFNELKTIRVELCDQL---- 118
           E L      L + IK E+             +DRL    Q F +    R++   +L    
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 119 ------SNIFL----------LSAAKCLPRLERIAVINCRNIQEIFVVD-GEYDAIDHQK 161
                  N+ +          ++   C         + C+   +IF ++    +      
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVC-----LSYKVQCKMDFKIFWLNLKNCN-SPETV 198

Query: 162 IEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVA 221
           +E   L  L     P  TS        +           +I S++ +L     L   K  
Sbjct: 199 LE--MLQKLLYQIDPNWTSRSDHSSNIKL----------RIHSIQAEL---RRLLKSKPY 243

Query: 222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKL-----KYIFSASMLGS 276
            + L VL         + + +     F    NL       C  L     K +       +
Sbjct: 244 ENCLLVLL-------NVQNAKA-WNAF----NL------SCKILLTTRFKQVTDFLSAAT 285

Query: 277 FEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKC----LYPGM- 331
             H+          L     K           +  +    R   LP            + 
Sbjct: 286 TTHISLDHHS--MTLTPDEVKS----------LLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 332 ------HTSEWPALKLLDVSACDQV-TVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVF 384
                   + W   K ++   CD++ T+ +S L          +P     + +F    VF
Sbjct: 334 AESIRDGLATWDNWKHVN---CDKLTTIIESSL-------NVLEPAE--YRKMFDRLSVF 381

Query: 385 PNLEELGLDGKDIRMIWHGDFPQHLFGGLKVL--QLKFDASAAVVSSCDNLLILLPSSSV 442
           P           I        P  L   L ++   +       VV+              
Sbjct: 382 P-------PSAHI--------PTIL---LSLIWFDVIKSDVMVVVNKL------------ 411

Query: 443 SFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVF 502
                        K    LV     +S +++  +       +   VK E        IV 
Sbjct: 412 ------------HKYS--LVEKQPKESTISIPSIY------LELKVKLENEYALHRSIV- 450

Query: 503 NKLKMLSLLDLDSLTSFCSGNYIFKF 528
           +   +    D D L       Y +  
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSH 476

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 45/346 (13%), Positives = 96/346 (27%), Gaps = 98/346 (28%)

Query: 199 SNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQL---PVAMFLC-FQNL 254
            N+  S        + L +++     +++  M         +N L   P +  L     L
Sbjct: 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMG--------YNNLEEFPASASLQKMVKL 575

Query: 255 TRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVT 314
             L      K++++      G+   L  L++ Y + ++EI           P        
Sbjct: 576 GLLDCVHN-KVRHL---EAFGTNVKLTDLKLDYNQ-IEEI-----------PEDFCAFTD 619

Query: 315 ILRLVGLP--ELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIP 372
            +  +G    +LK +    +      +  +D S   ++                      
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIG------------------SEG 660

Query: 373 AQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDN 432
                 + +    N   + L   +I+       P  LF     +      S       +N
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKF-----PTELFATGSPIS-TIILS-------NN 707

Query: 433 LLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEG 492
           L+  +P +S+  ++           LT +                               
Sbjct: 708 LMTSIPENSLKPKDGNY---KNTYLLTTIDLR---------------------------F 737

Query: 493 NQLAR--EEIVFNKLKMLSLLDLDS--LTSFCSGNYIFKFPSLEVL 534
           N+L    ++     L  LS +D+     +SF +         L+  
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQ--PLNSSQLKAF 781

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 80/512 (15%), Positives = 144/512 (28%), Gaps = 120/512 (23%)

Query: 2   RTLKLKFN---SVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFL----QLKHLH 54
             L+L F       +     + +K +  L L K     N +  L           LK + 
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK-----NQIRSLYLHPSFGKLNSLKSID 154

Query: 55  VQNNPDFMCIVDSKERVPLDDAFPILESLNL-YNLIKLERICQDRLSVQSFNELKTIRVE 113
             +N     I    E          L   +L  N +            +  N  + + +E
Sbjct: 155 FSSNQ----IFLVCEHELEPLQGKTLSFFSLAANSLYSR---VSVDWGKCMNPFRNMVLE 207

Query: 114 LCDQLSN-IFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCL 172
           + D   N   +         + +    +      I      +  I     +    + L  
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD--PDQNTFAGLAR 265

Query: 173 GSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNK 232
            S+  L                       + S      ++S +F     L +L+VL +  
Sbjct: 266 SSVRHLD-----------------LSHGFVFS------LNSRVFE---TLKDLKVLNLAY 299

Query: 233 VNIEKIWHNQLPVAMFLCFQNLTRLILRKC-------------PKLKYI------FSASM 273
             I KI         F    NL  L L                PK+ YI       +   
Sbjct: 300 NKINKIADE-----AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 274 LGSFEHLQHLE-----------IRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP 322
             +F+ L+ L+           I +   + +I         +P   +   +  L    L 
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL- 413

Query: 323 ELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK 382
             + L         P L++L ++     +    +  S                       
Sbjct: 414 --ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN--------------------- 450

Query: 383 VFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQ-LKFDASAAVVSSCDNLLILLPSSS 441
             P+LE+L L    +++ W  +    +F GL  LQ L        ++    L  L P   
Sbjct: 451 --PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY-------LNHN-YLNSLPPGVF 500

Query: 442 VSFRNLKILEVSGCKKLTNLVASSAAQSLVAL 473
                L+ L ++   +LT L  +    +L  L
Sbjct: 501 SHLTALRGLSLNSN-RLTVLSHNDLPANLEIL 531

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 54/328 (16%), Positives = 99/328 (30%), Gaps = 74/328 (22%)

Query: 2   RTLKLKFNS-VSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFL---QLKHLHVQN 57
           R L L      S+ S+  + +KD++ L L       N +  +  E F     L+ L++  
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-----NKINKIADEAFYGLDNLQVLNLSY 323

Query: 58  NPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQ 117
           N                     L S N Y L K+       + +   N +  I+ +    
Sbjct: 324 NL-----------------LGELYSSNFYGLPKVAY-----IDL-QKNHIAIIQDQTFKF 360

Query: 118 LSNIFLLS----AAKCLPRLERIAVIN--CRNIQEIFVVDGEYDAIDHQKIEFGQLSTLC 171
           L  +  L     A   +  +  I  I      +  +  ++   + I   +     L  L 
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420

Query: 172 -LGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEM 230
            L  +P L                     N+ SS       S           +LE L +
Sbjct: 421 FLLRVPHLQILILN--------------QNRFSSCSGDQTPSE--------NPSLEQLFL 458

Query: 231 NKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKG 290
            +  ++  W  +L   +F    +L  L L     L  +    +      L+ L +   + 
Sbjct: 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSL-PPGVFSHLTALRGLSLNSNR- 515

Query: 291 LQEIISKEGADDQVPPNFVFPQVTILRL 318
           L  +            N +   + IL +
Sbjct: 516 LTVL----------SHNDLPANLEILDI 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 50/342 (14%), Positives = 103/342 (30%), Gaps = 58/342 (16%)

Query: 199 SNKISSLEDKLDISSPLFNEKVALS-NLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRL 257
            N ++ ++        +   K+ L  N + L + K  I+ +   ++          L   
Sbjct: 186 LNPMNFIQP--GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV--------HRLVLG 235

Query: 258 ILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILR 317
             R    L+         + E L +L I   +        +   D      +F  +T + 
Sbjct: 236 EFRNEGNLEKF----DKSALEGLCNLTIEEFRLAYLDYYLDDIID------LFNCLTNVS 285

Query: 318 LVGLPE--LKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQ 375
              L    ++ +    +   W  L+L++       T+    L     +S +   +  ++ 
Sbjct: 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-NAFSEV 344

Query: 376 PLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLI 435
            L       P+LE L L    +              G   L+         +    N +I
Sbjct: 345 DL-------PSLEFLDLSRNGLSFK---GCCSQSDFGTTSLK--------YLDLSFNGVI 386

Query: 436 LLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQL 495
            + S+ +    L+ L+      L  +   S   SL  L+ + +                 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDI------------SHTHT 433

Query: 496 AR-EEIVFNKLKMLSLLDLD--SLTSFCSGNYIFKFPSLEVL 534
                 +FN L  L +L +   S       +   +  +L  L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 55/471 (11%), Positives = 148/471 (31%), Gaps = 79/471 (16%)

Query: 73  LDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPR 132
           + +    L+S++   +  +  +  DRL+    ++L+T++++ C   +   LLS      +
Sbjct: 107 ISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRK 165

Query: 133 LERIAVINCRNIQEIFVVDGEY----DAIDHQKIEFGQLSTLCLGSLPELTSFCC---EV 185
           ++ + +      ++      E      +++       + + +    L  +   C     V
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 186 KKNRQAQGMHETCSNKISSLED--KLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQL 243
           K                ++LE+     ++  +   +  ++ +   ++ ++ +  +  N++
Sbjct: 226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285

Query: 244 PVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYC---KGLQEIISKEGA 300
           P+        + +L L            +++    +L+ LE R     +GL+ +      
Sbjct: 286 PILFPFA-AQIRKLDLLYALLETEDH-CTLIQKCPNLEVLETRNVIGDRGLEVLAQY--- 340

Query: 301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHT----------SEWPALKLLDVSACDQV 350
                      Q+  LR+    + + +                     L+ + V     +
Sbjct: 341 ---------CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDI 390

Query: 351 TVFDSELFSFCE-------------SSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGK-- 395
           T  +  L S                  EE   D+P    +         L       +  
Sbjct: 391 T--NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448

Query: 396 ---DIRMIWHGDFPQHLFGGLKVLQLKF-----DASAAVVSSCDNLLIL----------- 436
              D+ + + G +  +    ++ + L +     +        C NL  L           
Sbjct: 449 GLTDLGLSYIGQYSPN----VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504

Query: 437 LPSSSVSFRNLKILEVSGCK-KLTNLVASSAAQSLVALVKMQVFGCRAMTQ 486
           + ++     +L+ L V G +  +T       A+    +  +       + Q
Sbjct: 505 IAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQ 555

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	595
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.88
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.87
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.82
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.77
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.76
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.74
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.74
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.72
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.72
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.71
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.71
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.71
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.7
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.69
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.68
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.67
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.65
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.65
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.57
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.56
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.53
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.53
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.51
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.51
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.5
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.5
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.49
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.49
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.48
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.47
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.45
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.44
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.38
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.35
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.33
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.3
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.29
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.28
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.28
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.27
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.25
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.22
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.03
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.02
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.01
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.01
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.99
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.99
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.99
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.98
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.92
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.86
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.85
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.85
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.8
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.79
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.79
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.75
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.69
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.61
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.4
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.39
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.21
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.12
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.03
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.98
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.91
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.76
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.65
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.39
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.72
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.97
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.95
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.44
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	83.03

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=1.6e-29  Score=277.35  Aligned_cols=488  Identities=16%  Similarity=0.152  Sum_probs=274.5

Q ss_pred             ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689            2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL   80 (595)
Q Consensus         2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L   80 (595)
                      +.|+|..|.+ .+.+..|+.+++|++|++++|......+..+  +++++|++|+|++| .++.+.+.     .+..+++|
T Consensus        36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~-----~~~~l~~L  107 (606)
T 3t6q_A           36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF--QSQHRLDTLVLTAN-PLIFMAET-----ALSGPKAL  107 (606)
T ss_dssp             CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTT--TTCTTCCEEECTTC-CCSEECTT-----TTSSCTTC
T ss_pred             cEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhc--cCccccCeeeCCCC-cccccChh-----hhcccccc
Confidence            5677777765 3446677788888888888887643323334  78888888888888 67666444     45677888


Q ss_pred             cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecc-c--------
Q 036689           81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVV-D--------  151 (595)
Q Consensus        81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~--------  151 (595)
                      ++|+++++ .+..+.  +..+..+++|++|++++| .++.++. +.+..+++|++|++++|. +..++.. .        
T Consensus       108 ~~L~L~~n-~i~~l~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  181 (606)
T 3t6q_A          108 KHLFFIQT-GISSID--FIPLHNQKTLESLYLGSN-HISSIKL-PKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATN  181 (606)
T ss_dssp             CEEECTTS-CCSCGG--GSCCTTCTTCCEEECCSS-CCCCCCC-CTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCS
T ss_pred             cEeecccc-CcccCC--cchhccCCcccEEECCCC-cccccCc-ccccCCcccCEEEcccCc-ccccChhhhhhhcccce
Confidence            88888885 566542  233677888888888884 5555433 223347788888887743 3333210 0        


Q ss_pred             -------CcccccccccccccccceEecCCCCCccccccccccccccccccccccCccc-------------------cc
Q 036689          152 -------GEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKIS-------------------SL  205 (595)
Q Consensus       152 -------~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~  205 (595)
                             ..........+...+|+.|+++++..+.....+........+....+.+...                   .+
T Consensus       182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l  261 (606)
T 3t6q_A          182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL  261 (606)
T ss_dssp             EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred             eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence                   0000001122233445555555444222211111000010010000000000                   00


Q ss_pred             cc--cccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEE
Q 036689          206 ED--KLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHL  283 (595)
Q Consensus       206 ~~--~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L  283 (595)
                      .+  ....+...   ...+++|++|++++|.++.+     |.++ ..+++|++|+++++ .++...+. .+..+++|++|
T Consensus       262 ~~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~l-----p~~l-~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L  330 (606)
T 3t6q_A          262 QKHYFFNISSNT---FHCFSGLQELDLTATHLSEL-----PSGL-VGLSTLKKLVLSAN-KFENLCQI-SASNFPSLTHL  330 (606)
T ss_dssp             TTCCCSSCCTTT---TTTCTTCSEEECTTSCCSCC-----CSSC-CSCTTCCEEECTTC-CCSBGGGG-CGGGCTTCSEE
T ss_pred             ecCccCccCHHH---hccccCCCEEeccCCccCCC-----Chhh-cccccCCEEECccC-CcCcCchh-hhhccCcCCEE
Confidence            00  00111111   12355666666666655544     4443 45566666666654 34443232 34566666666


Q ss_pred             EeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccccc-CCCccccCcccceeeecCCCCccccccccccccC
Q 036689          284 EIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLY-PGMHTSEWPALKLLDVSACDQVTVFDSELFSFCE  362 (595)
Q Consensus       284 ~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~  362 (595)
                      ++++|.....++.....        .+++|++|+++++. +.... .......+++|+.|++++|.... ++.       
T Consensus       331 ~l~~n~~~~~~~~~~~~--------~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~-------  393 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLE--------NLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKT-------  393 (606)
T ss_dssp             ECCSCSSCCBCCSSTTT--------TCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEE-ECT-------
T ss_pred             ECCCCCcccccchhhhh--------ccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCc-CCH-------
Confidence            66666522233321111        26666666666644 22221 01112225667777766654322 222       


Q ss_pred             CCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCcc
Q 036689          363 SSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSV  442 (595)
Q Consensus       363 ~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~  442 (595)
                                      ..+..+++|++|++++|+....... .....+++|+.|+++          .+.+....+..+.
T Consensus       394 ----------------~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~----------~n~l~~~~~~~~~  446 (606)
T 3t6q_A          394 ----------------EAFKECPQLELLDLAFTRLKVKDAQ-SPFQNLHLLKVLNLS----------HSLLDISSEQLFD  446 (606)
T ss_dssp             ----------------TTTTTCTTCSEEECTTCCEECCTTC-CTTTTCTTCCEEECT----------TCCCBTTCTTTTT
T ss_pred             ----------------HHhcCCccCCeEECCCCcCCCcccc-hhhhCcccCCEEECC----------CCccCCcCHHHHh
Confidence                            2245678888888888876543221 123467788888884          3556666666778


Q ss_pred             ccCCccEEeEeCCCCCcc--cccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccc
Q 036689          443 SFRNLKILEVSGCKKLTN--LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFC  520 (595)
Q Consensus       443 ~l~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~  520 (595)
                      .+++|+.|+++++. +..  ++....++.+++|++|++++|. +++++.....       .+++|+.|+++++ .++...
T Consensus       447 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~~~~  516 (606)
T 3t6q_A          447 GLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFT-------SLKMMNHVDLSHN-RLTSSS  516 (606)
T ss_dssp             TCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECCSS-CCCGGG
T ss_pred             CCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhc-------cccCCCEEECCCC-ccCcCC
Confidence            89999999999854 443  2222456788999999999986 6666443322       4889999999996 555554


Q ss_pred             cCcccccCCCccEEEEeCCCCccccC-CCCCCCCCcceEEeccCCCccccCch
Q 036689          521 SGNYIFKFPSLEVLFVVGCPKMNIFT-TGELSTPPRVDVMYRNRGAPCWDGDL  572 (595)
Q Consensus       521 ~~~~~~~~~~L~~L~l~~C~~l~~lp-~~~~~~~~L~~l~i~~~~~~~~~~~~  572 (595)
                      .... ..++.| +|++++| +++.+| ..+..+++|+++++++|. |.++...
T Consensus       517 ~~~l-~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-~~c~c~~  565 (606)
T 3t6q_A          517 IEAL-SHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP-LDCTCSN  565 (606)
T ss_dssp             GGGG-TTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC-EECSGGG
T ss_pred             hhHh-Cccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC-ccccCCc
Confidence            3332 357888 9999998 455554 445678999999998654 5555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.97  E-value=1.2e-28  Score=270.52  Aligned_cols=482  Identities=16%  Similarity=0.137  Sum_probs=298.2

Q ss_pred             ceeccccccc-ccCcccccccccccEEEeccCCCCccccc-cccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCC
Q 036689            2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLF-DLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPI   79 (595)
Q Consensus         2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~   79 (595)
                      +.|+|..|.+ .+.+..|+.+++|++|+++++... .+.+ .+  +++++|++|+|++| .++.+.+.     .+..+++
T Consensus        35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~--~~l~~L~~L~Ls~n-~l~~~~p~-----~~~~l~~  105 (606)
T 3vq2_A           35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAW--HGLHHLSNLILTGN-PIQSFSPG-----SFSGLTS  105 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTT--TTCTTCCEEECTTC-CCCCCCTT-----SSTTCTT
T ss_pred             CEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHh--hchhhcCEeECCCC-cccccChh-----hcCCccc
Confidence            5677777765 344667778899999999988763 3333 34  78999999999988 57766444     5678899


Q ss_pred             ccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccC-------
Q 036689           80 LESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDG-------  152 (595)
Q Consensus        80 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-------  152 (595)
                      |++|+++++ .+..+..  ..++.+++|++|++++| .++....+..++++++|++|++++| .+..++....       
T Consensus       106 L~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~  180 (606)
T 3vq2_A          106 LENLVAVET-KLASLES--FPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENP  180 (606)
T ss_dssp             CCEEECTTS-CCCCSSS--SCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCT
T ss_pred             CCEEEccCC-ccccccc--cccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccc
Confidence            999999996 6666532  33788999999999996 5554322267888999999999985 4444432100       


Q ss_pred             -----------cccccccccccccccceEecCCCCCcccc-cccc-cccccc--ccccccccCcc--c------------
Q 036689          153 -----------EYDAIDHQKIEFGQLSTLCLGSLPELTSF-CCEV-KKNRQA--QGMHETCSNKI--S------------  203 (595)
Q Consensus       153 -----------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~-~~~~~~--~~~~~~~~~~~--~------------  203 (595)
                                 ....+....+...+|+.|+++++..-... +... ....+.  .+....+.+..  .            
T Consensus       181 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~  260 (606)
T 3vq2_A          181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD  260 (606)
T ss_dssp             TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred             cccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence                       00001112223336666666654321000 0000 000000  00000000000  0            


Q ss_pred             -cccc----cccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccC
Q 036689          204 -SLED----KLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFE  278 (595)
Q Consensus       204 -~~~~----~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~  278 (595)
                       .+..    ..............+++|+.|+++++.+..+     | ++ ..+++|++|++++|.. +.++.   + .++
T Consensus       261 l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-----~-~l-~~~~~L~~L~l~~n~l-~~lp~---~-~l~  328 (606)
T 3vq2_A          261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-----E-DV-PKHFKWQSLSIIRCQL-KQFPT---L-DLP  328 (606)
T ss_dssp             SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCC-----C-CC-CTTCCCSEEEEESCCC-SSCCC---C-CCS
T ss_pred             ccHhheeccccccccccccccccCCCCCEEEecCccchhh-----h-hc-cccccCCEEEcccccC-ccccc---C-CCC
Confidence             0000    0000000011133567788888887766655     3 22 4577888888887744 55432   2 778


Q ss_pred             CCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccccc-CCCccccCcccceeeecCCCCcccccccc
Q 036689          279 HLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLY-PGMHTSEWPALKLLDVSACDQVTVFDSEL  357 (595)
Q Consensus       279 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~  357 (595)
                      +|++|++++|..+..+..           ..+++|++|+++++. +.... .......+++|+.|++++|. ++.+|.  
T Consensus       329 ~L~~L~l~~n~~~~~~~~-----------~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~--  393 (606)
T 3vq2_A          329 FLKSLTLTMNKGSISFKK-----------VALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA--  393 (606)
T ss_dssp             SCCEEEEESCSSCEECCC-----------CCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECC--
T ss_pred             ccceeeccCCcCccchhh-----------ccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchh--
Confidence            888888888754443311           127888888888754 33321 01112236788888888775 444443  


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccC
Q 036689          358 FSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILL  437 (595)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~  437 (595)
                                            .+..+++|++|++++|......+. .....+++|+.|+++          .+.+....
T Consensus       394 ----------------------~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~----------~n~l~~~~  440 (606)
T 3vq2_A          394 ----------------------NFMGLEELQHLDFQHSTLKRVTEF-SAFLSLEKLLYLDIS----------YTNTKIDF  440 (606)
T ss_dssp             ----------------------CCTTCTTCCEEECTTSEEESTTTT-TTTTTCTTCCEEECT----------TSCCEECC
T ss_pred             ----------------------hccCCCCCCeeECCCCccCCccCh-hhhhccccCCEEECc----------CCCCCccc
Confidence                                  146789999999999876654321 223467889999994          35566666


Q ss_pred             CCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccccc
Q 036689          438 PSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLT  517 (595)
Q Consensus       438 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  517 (595)
                      +..+..+++|+.|++++| .+........++.+++|++|++++|. ++.++.....       .+++|+.|+++++ .++
T Consensus       441 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~Ls~N-~l~  510 (606)
T 3vq2_A          441 DGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFD-------TLHRLQLLNMSHN-NLL  510 (606)
T ss_dssp             TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECCSS-CCS
T ss_pred             hhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccChhhhc-------ccccCCEEECCCC-cCC
Confidence            667888999999999985 45542122445788999999999996 6666443322       4899999999997 565


Q ss_pred             cc-ccCcccccCCCccEEEEeCCCCccccCCCCCCCC-CcceEEeccCCCccccCc
Q 036689          518 SF-CSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTP-PRVDVMYRNRGAPCWDGD  571 (595)
Q Consensus       518 ~l-~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~-~L~~l~i~~~~~~~~~~~  571 (595)
                      .+ +...  ..+++|++|++++| +++.+|..+..++ +|+++++++|. |.++..
T Consensus       511 ~~~~~~~--~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~-~~c~c~  562 (606)
T 3vq2_A          511 FLDSSHY--NQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS-VACICE  562 (606)
T ss_dssp             CEEGGGT--TTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC-CCCSST
T ss_pred             CcCHHHc--cCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC-cccCCc
Confidence            55 4333  34899999999998 5889998887787 59999998654 444333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=2.5e-29  Score=282.71  Aligned_cols=464  Identities=14%  Similarity=0.022  Sum_probs=258.0

Q ss_pred             eecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccE
Q 036689            3 TLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILES   82 (595)
Q Consensus         3 ~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~   82 (595)
                      .++++++++.-.+++|+.+++|++|+|++|...+.++.....+.+++|++|+|++| .+....+.    .....+++|++
T Consensus        81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~----~~~~~l~~L~~  155 (768)
T 3rgz_A           81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN-TLDFPGKV----SGGLKLNSLEV  155 (768)
T ss_dssp             EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSS-EEECCSSC----CSCCCCTTCSE
T ss_pred             ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCC-ccCCcCCH----HHhccCCCCCE
Confidence            34445554211146777889999999998887555555212388999999999888 45433222    12256788888


Q ss_pred             EeccCccCcccccccc-ccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689           83 LNLYNLIKLERICQDR-LSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK  161 (595)
Q Consensus        83 L~l~~~~~l~~~~~~~-~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  161 (595)
                      |+++++ ++....... ..+..+++|++|++++| .+....+   +..+++|++|++++|.....++           ..
T Consensus       156 L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~-----------~l  219 (768)
T 3rgz_A          156 LDLSAN-SISGANVVGWVLSDGCGELKHLAISGN-KISGDVD---VSRCVNLEFLDVSSNNFSTGIP-----------FL  219 (768)
T ss_dssp             EECCSS-CCEEETHHHHHHTTCCTTCCEEECCSS-EEESCCB---CTTCTTCCEEECCSSCCCSCCC-----------BC
T ss_pred             EECCCC-ccCCcCChhhhhhccCCCCCEEECCCC-cccccCC---cccCCcCCEEECcCCcCCCCCc-----------cc
Confidence            888886 555431110 00456777777777775 3444322   2567777777777755433222           13


Q ss_pred             ccccccceEecCCCCCcccccccc-ccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecc
Q 036689          162 IEFGQLSTLCLGSLPELTSFCCEV-KKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWH  240 (595)
Q Consensus       162 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~  240 (595)
                      ..+++|++|+++++.--..++... ....++.+....|.-.        .    ... ...+++|++|++++|.++..  
T Consensus       220 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--------~----~~~-~~~l~~L~~L~L~~n~l~~~--  284 (768)
T 3rgz_A          220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV--------G----PIP-PLPLKSLQYLSLAENKFTGE--  284 (768)
T ss_dssp             TTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE--------E----SCC-CCCCTTCCEEECCSSEEEES--
T ss_pred             ccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCccc--------C----ccC-ccccCCCCEEECcCCccCCc--
Confidence            345666666666654222222111 1111111111111100        0    000 01466777777777766522  


Q ss_pred             cCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccc-eecccccCCCCCCCCcCCCcccEEeec
Q 036689          241 NQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQ-EIISKEGADDQVPPNFVFPQVTILRLV  319 (595)
Q Consensus       241 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~l~~L~~L~L~  319 (595)
                        +|.+++..+++|++|++++| .++...+. .++++++|++|++++|. ++ .++......        +++|++|+++
T Consensus       285 --ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~-~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~--------l~~L~~L~Ls  351 (768)
T 3rgz_A          285 --IPDFLSGACDTLTGLDLSGN-HFYGAVPP-FFGSCSLLESLALSSNN-FSGELPMDTLLK--------MRGLKVLDLS  351 (768)
T ss_dssp             --CCCCSCTTCTTCSEEECCSS-EEEECCCG-GGGGCTTCCEEECCSSE-EEEECCHHHHTT--------CTTCCEEECC
T ss_pred             --cCHHHHhhcCcCCEEECcCC-cCCCccch-HHhcCCCccEEECCCCc-ccCcCCHHHHhc--------CCCCCEEeCc
Confidence              24444233477888888765 34433333 35777788888887776 54 444321222        6777888877


Q ss_pred             CCCCcccccCCCccccCc-ccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCe
Q 036689          320 GLPELKCLYPGMHTSEWP-ALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIR  398 (595)
Q Consensus       320 ~~~~l~~~~~~~~~~~~~-~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  398 (595)
                      ++.-...++....  .++ +|+.|++++|.....+|..+.                      ...+++|++|++++|...
T Consensus       352 ~n~l~~~~p~~l~--~l~~~L~~L~Ls~N~l~~~~~~~~~----------------------~~~~~~L~~L~L~~n~l~  407 (768)
T 3rgz_A          352 FNEFSGELPESLT--NLSASLLTLDLSSNNFSGPILPNLC----------------------QNPKNTLQELYLQNNGFT  407 (768)
T ss_dssp             SSEEEECCCTTHH--HHTTTCSEEECCSSEEEEECCTTTT----------------------CSTTCCCCEEECCSSEEE
T ss_pred             CCccCccccHHHH--hhhcCCcEEEccCCCcCCCcChhhh----------------------hcccCCccEEECCCCccc
Confidence            7643323333221  133 777777777654444444100                      112566777777777655


Q ss_pred             eccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEE
Q 036689          399 MIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQV  478 (595)
Q Consensus       399 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l  478 (595)
                      +..+.  ....+++|+.|++.          .+.+....+..+..+++|+.|++++|. +....+ ..+..+++|++|++
T Consensus       408 ~~~p~--~l~~l~~L~~L~Ls----------~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          408 GKIPP--TLSNCSELVSLHLS----------FNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIP-QELMYVKTLETLIL  473 (768)
T ss_dssp             EECCG--GGGGCTTCCEEECC----------SSEEESCCCGGGGGCTTCCEEECCSSC-CCSCCC-GGGGGCTTCCEEEC
T ss_pred             cccCH--HHhcCCCCCEEECc----------CCcccCcccHHHhcCCCCCEEECCCCc-ccCcCC-HHHcCCCCceEEEe
Confidence            43221  12355677777773          344555555566667777777777743 443323 23456677777777


Q ss_pred             cCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceE
Q 036689          479 FGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDV  558 (595)
Q Consensus       479 ~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l  558 (595)
                      ++|.-...++....        .+++|+.|+++++.-...+|.+..  .+++|++|++++|.-...+|..+.++++|+++
T Consensus       474 ~~N~l~~~~p~~l~--------~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  543 (768)
T 3rgz_A          474 DFNDLTGEIPSGLS--------NCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFSGNIPAELGDCRSLIWL  543 (768)
T ss_dssp             CSSCCCSCCCGGGG--------GCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred             cCCcccCcCCHHHh--------cCCCCCEEEccCCccCCcCChHHh--cCCCCCEEECCCCcccCcCCHHHcCCCCCCEE
Confidence            77752223332222        367777777777643335555442  37777777777775555667666677777777


Q ss_pred             EeccC
Q 036689          559 MYRNR  563 (595)
Q Consensus       559 ~i~~~  563 (595)
                      ++++|
T Consensus       544 ~Ls~N  548 (768)
T 3rgz_A          544 DLNTN  548 (768)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            77655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=7.4e-28  Score=264.16  Aligned_cols=473  Identities=14%  Similarity=0.085  Sum_probs=249.0

Q ss_pred             cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689           21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS  100 (595)
Q Consensus        21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  100 (595)
                      ..++++|+++++......+..+  +++++|++|+|++| .++.+.+.     .+..+++|++|+++++ .+..+.  +..
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n-~i~~~~~~-----~~~~l~~L~~L~Ls~n-~l~~~~--~~~  100 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTF--SRLINLTFLDLTRC-QIYWIHED-----TFQSQHRLDTLVLTAN-PLIFMA--ETA  100 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTS--TTCTTCSEEECTTC-CCCEECTT-----TTTTCTTCCEEECTTC-CCSEEC--TTT
T ss_pred             CCcCcEEEccCCccCcCChhHh--ccCccceEEECCCC-ccceeChh-----hccCccccCeeeCCCC-cccccC--hhh
Confidence            4579999999998843323344  89999999999999 78777554     5778999999999996 666552  334


Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS  180 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  180 (595)
                      ++.+++|++|++++| .++.+.+ ..++++++|++|++++|. +..++.         .....+++|+.|+++++. +..
T Consensus       101 ~~~l~~L~~L~L~~n-~i~~l~~-~~~~~l~~L~~L~L~~n~-l~~~~~---------~~~~~l~~L~~L~L~~n~-l~~  167 (606)
T 3t6q_A          101 LSGPKALKHLFFIQT-GISSIDF-IPLHNQKTLESLYLGSNH-ISSIKL---------PKGFPTEKLKVLDFQNNA-IHY  167 (606)
T ss_dssp             TSSCTTCCEEECTTS-CCSCGGG-SCCTTCTTCCEEECCSSC-CCCCCC---------CTTCCCTTCCEEECCSSC-CCE
T ss_pred             hcccccccEeecccc-CcccCCc-chhccCCcccEEECCCCc-ccccCc---------ccccCCcccCEEEcccCc-ccc
Confidence            788999999999995 6776643 557899999999999954 443321         123347899999998864 222


Q ss_pred             ccccc--cccccc--ccccccccCccccccccccCCCccccccccCCccceeeccccc-cee------------ecc---
Q 036689          181 FCCEV--KKNRQA--QGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVN-IEK------------IWH---  240 (595)
Q Consensus       181 ~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~------------~~~---  240 (595)
                      +....  ....+.  .+....+.        ........|    ....|+.|+++++. +..            ++.   
T Consensus       168 ~~~~~~~~l~~L~~l~L~l~~n~--------l~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~  235 (606)
T 3t6q_A          168 LSKEDMSSLQQATNLSLNLNGND--------IAGIEPGAF----DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF  235 (606)
T ss_dssp             ECHHHHHTTTTCCSEEEECTTCC--------CCEECTTTT----TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCC
T ss_pred             cChhhhhhhcccceeEEecCCCc--------cCccChhHh----hhccccccccCCchhHHHHhhhccccchhheechhh
Confidence            22110  001111  11110000        001111111    23456666666541 110            000   


Q ss_pred             -----cCCCccccccC--CCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcc
Q 036689          241 -----NQLPVAMFLCF--QNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQV  313 (595)
Q Consensus       241 -----~~~~~~~~~~l--~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L  313 (595)
                           ..++...+..+  .+|+.|+++++ .++.+++ ..++.+++|++|++++|. ++.++. ...        .+++|
T Consensus       236 ~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~lp~-~l~--------~l~~L  303 (606)
T 3t6q_A          236 EDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISS-NTFHCFSGLQELDLTATH-LSELPS-GLV--------GLSTL  303 (606)
T ss_dssp             TTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCT-TTTTTCTTCSEEECTTSC-CSCCCS-SCC--------SCTTC
T ss_pred             ccccccccChhHhchhhcCceeEEEeecC-ccCccCH-HHhccccCCCEEeccCCc-cCCCCh-hhc--------ccccC
Confidence                 00111110111  15666666654 4454433 234667777777777775 665543 111        26677


Q ss_pred             cEEeecCCCCcccccCCCccccCcccceeeecCCCCcccccccc-ccc-cCCCCCCCCCCCCCCC-CCCcCccCCCcceE
Q 036689          314 TILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSEL-FSF-CESSEEDKPDIPAQQP-LFLPEKVFPNLEEL  390 (595)
Q Consensus       314 ~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~-~~~~~~~~~~~~~~~~-l~~~~~~l~~L~~L  390 (595)
                      ++|+++++. +...... ....+++|+.|+++++.....++.+. ... +............... ....+..+++|++|
T Consensus       304 ~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  381 (606)
T 3t6q_A          304 KKLVLSANK-FENLCQI-SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL  381 (606)
T ss_dssp             CEEECTTCC-CSBGGGG-CGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEE
T ss_pred             CEEECccCC-cCcCchh-hhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEE
Confidence            777777654 3322211 11225667777776665443343310 000 0000000000000000 00113445555555


Q ss_pred             eccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccC-CCCccccCCccEEeEeCCCCCcccccchHHhh
Q 036689          391 GLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILL-PSSSVSFRNLKILEVSGCKKLTNLVASSAAQS  469 (595)
Q Consensus       391 ~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  469 (595)
                      ++++|......+.  ....+++|+.|++.          .+.+.... +..+..+++|+.|++++| .++...+ ..++.
T Consensus       382 ~l~~n~l~~~~~~--~~~~l~~L~~L~l~----------~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~  447 (606)
T 3t6q_A          382 NLSYNEPLSLKTE--AFKECPQLELLDLA----------FTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSE-QLFDG  447 (606)
T ss_dssp             ECCSCSCEEECTT--TTTTCTTCSEEECT----------TCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCT-TTTTT
T ss_pred             ECCCCcCCcCCHH--HhcCCccCCeEECC----------CCcCCCcccchhhhCcccCCEEECCCC-ccCCcCH-HHHhC
Confidence            5555554433221  12234555555552          23333332 223556677777777764 3444322 33456


Q ss_pred             cccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCC
Q 036689          470 LVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGE  549 (595)
Q Consensus       470 l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~  549 (595)
                      +++|++|++++|. +.+......    .....+++|+.|++++| .++.++.... ..+++|++|++++|.--...|..+
T Consensus       448 l~~L~~L~L~~n~-l~~~~~~~~----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l  520 (606)
T 3t6q_A          448 LPALQHLNLQGNH-FPKGNIQKT----NSLQTLGRLEILVLSFC-DLSSIDQHAF-TSLKMMNHVDLSHNRLTSSSIEAL  520 (606)
T ss_dssp             CTTCCEEECTTCB-CGGGEECSS----CGGGGCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCGGGGGGG
T ss_pred             CCCCCEEECCCCC-CCccccccc----hhhccCCCccEEECCCC-ccCccChhhh-ccccCCCEEECCCCccCcCChhHh
Confidence            6777777777765 333111000    00113677777777775 4554533222 246777777777764333345566


Q ss_pred             CCCCCcceEEeccCCC
Q 036689          550 LSTPPRVDVMYRNRGA  565 (595)
Q Consensus       550 ~~~~~L~~l~i~~~~~  565 (595)
                      .++++| ++++++|.-
T Consensus       521 ~~l~~L-~L~L~~N~l  535 (606)
T 3t6q_A          521 SHLKGI-YLNLASNHI  535 (606)
T ss_dssp             TTCCSC-EEECCSSCC
T ss_pred             Cccccc-EEECcCCcc
Confidence            667777 777776544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=1.6e-27  Score=265.13  Aligned_cols=468  Identities=16%  Similarity=0.108  Sum_probs=230.9

Q ss_pred             ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689            2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL   80 (595)
Q Consensus         2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L   80 (595)
                      +.|+|..|.+ .+.+..|+.+++|++|+++++......+..+  +.+++|++|++++| .++.+++.     .+..+++|
T Consensus        28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~l~~~-----~~~~l~~L   99 (680)
T 1ziw_A           28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELC--QKLPMLKVLNLQHN-ELSQLSDK-----TFAFCTNL   99 (680)
T ss_dssp             SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHH--HHCTTCCEEECCSS-CCCCCCTT-----TTTTCTTC
T ss_pred             cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHH--hcccCcCEEECCCC-ccCccChh-----hhccCCCC
Confidence            4556655554 2334456666777777777665533222222  66777777777776 55555332     34566777


Q ss_pred             cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccc
Q 036689           81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQ  160 (595)
Q Consensus        81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  160 (595)
                      ++|+++++ .+..+..  ..++.+++|++|++++| .++..++ ..+.++++|++|++++|. +..++...       -.
T Consensus       100 ~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~-------~~  166 (680)
T 1ziw_A          100 TELHLMSN-SIQKIKN--NPFVKQKNLITLDLSHN-GLSSTKL-GTQVQLENLQELLLSNNK-IQALKSEE-------LD  166 (680)
T ss_dssp             SEEECCSS-CCCCCCS--CTTTTCTTCCEEECCSS-CCSCCCC-CSSSCCTTCCEEECCSSC-CCCBCHHH-------HG
T ss_pred             CEEECCCC-ccCccCh--hHccccCCCCEEECCCC-cccccCc-hhhcccccCCEEEccCCc-ccccCHHH-------hh
Confidence            77777775 4554422  23566777777777774 4444433 445667777777777643 33222100       01


Q ss_pred             cccccccceEecCCCCCcccccccc--ccccccccccccccCccccccccccCCCccccccccCCccceeecccccceee
Q 036689          161 KIEFGQLSTLCLGSLPELTSFCCEV--KKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKI  238 (595)
Q Consensus       161 ~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  238 (595)
                      ...+++|+.|+++++. +..+....  ....+..+....+.-.     .   .....+......++|+.|+++++.++.+
T Consensus       167 ~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~-----~---~~~~~~~~~l~~~~L~~L~L~~n~l~~~  237 (680)
T 1ziw_A          167 IFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLG-----P---SLTEKLCLELANTSIRNLSLSNSQLSTT  237 (680)
T ss_dssp             GGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCH-----H---HHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred             ccccccccEEECCCCc-ccccChhhhhhhhhhhhhhccccccC-----h---hhHHHHHHHhhhccccEEEccCCccccc
Confidence            1234667777776652 22222110  0001111100000000     0   0000000001235677777777766554


Q ss_pred             cccCCCccccccC--CCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEE
Q 036689          239 WHNQLPVAMFLCF--QNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTIL  316 (595)
Q Consensus       239 ~~~~~~~~~~~~l--~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L  316 (595)
                      .    |.++ ..+  ++|+.|+++++ .++.+.+. .++.+++|++|++++|. ++.+++..+.+        +++|+.|
T Consensus       238 ~----~~~~-~~l~~~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--------l~~L~~L  301 (680)
T 1ziw_A          238 S----NTTF-LGLKWTNLTMLDLSYN-NLNVVGND-SFAWLPQLEYFFLEYNN-IQHLFSHSLHG--------LFNVRYL  301 (680)
T ss_dssp             C----TTTT-GGGGGSCCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSCC-BSEECTTTTTT--------CTTCCEE
T ss_pred             C----hhHh-hccCcCCCCEEECCCC-CcCccCcc-cccCcccccEeeCCCCc-cCccChhhhcC--------CCCccEE
Confidence            2    2222 233  34777777765 34444332 34677777777777776 66655433322        6677777


Q ss_pred             eecCCCCcc-----cccC--CCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcce
Q 036689          317 RLVGLPELK-----CLYP--GMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEE  389 (595)
Q Consensus       317 ~L~~~~~l~-----~~~~--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~  389 (595)
                      ++.++..-.     .++.  ......+++|+.|+++++. ++.++.                       ..+..+++|++
T Consensus       302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~-----------------------~~~~~l~~L~~  357 (680)
T 1ziw_A          302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS-----------------------NMFTGLINLKY  357 (680)
T ss_dssp             ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT-----------------------TTTTTCTTCCE
T ss_pred             eccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCCh-----------------------hHhccccCCcE
Confidence            776532111     1110  0011125667777766653 222222                       11233444555


Q ss_pred             EeccC----------------------------CCCeeccCCCCCcccccCceeEEeeccccccccccCccccc-cCCCC
Q 036689          390 LGLDG----------------------------KDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLI-LLPSS  440 (595)
Q Consensus       390 L~l~~----------------------------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~-~~~~~  440 (595)
                      |++++                            |+...+.+.  ....+++|+.|++++          +.+.. +++..
T Consensus       358 L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~----------N~l~~~~~~~~  425 (680)
T 1ziw_A          358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD--AFSWLGHLEVLDLGL----------NEIGQELTGQE  425 (680)
T ss_dssp             EECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT--TTTTCTTCCEEECCS----------SCCEEECCSGG
T ss_pred             EECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh--hhhCCCCCCEEeCCC----------CcCccccCccc
Confidence            55544                            443332221  112344455555522          22322 22233


Q ss_pred             ccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCccccc---chhcccCccccccccccccccceecccccccc
Q 036689          441 SVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMT---QVVKSEGNQLAREEIVFNKLKMLSLLDLDSLT  517 (595)
Q Consensus       441 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~---~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~  517 (595)
                      +..+++|+.|+++++ .+..+.+ ..+..+++|++|+++++. +.   .++...        ..+++|+.|+++++ .++
T Consensus       426 ~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~--------~~l~~L~~L~Ls~N-~l~  493 (680)
T 1ziw_A          426 WRGLENIFEIYLSYN-KYLQLTR-NSFALVPSLQRLMLRRVA-LKNVDSSPSPF--------QPLRNLTILDLSNN-NIA  493 (680)
T ss_dssp             GTTCTTCCEEECCSC-SEEECCT-TTTTTCTTCCEEECTTSC-CBCTTCSSCTT--------TTCTTCCEEECCSS-CCC
T ss_pred             ccCcccccEEecCCC-CcceeCh-hhhhcCcccccchhcccc-ccccccCCccc--------ccCCCCCEEECCCC-CCC
Confidence            444555555555553 2333322 223445555555555543 22   111111        13677888888874 566


Q ss_pred             ccccCcccccCCCccEEEEeCCCCccccCC---------CCCCCCCcceEEeccCCC
Q 036689          518 SFCSGNYIFKFPSLEVLFVVGCPKMNIFTT---------GELSTPPRVDVMYRNRGA  565 (595)
Q Consensus       518 ~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~---------~~~~~~~L~~l~i~~~~~  565 (595)
                      .++.+.. ..+++|++|+++++ +++.++.         .+..+++|+++++++|+-
T Consensus       494 ~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l  548 (680)
T 1ziw_A          494 NINDDML-EGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGF  548 (680)
T ss_dssp             CCCTTTT-TTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred             cCChhhh-ccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence            6665543 24778888888876 4554421         245678888888887654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=2e-28  Score=275.31  Aligned_cols=271  Identities=14%  Similarity=0.039  Sum_probs=136.3

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD  301 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  301 (595)
                      +++|++|++++|.++..    +|..+ ..+++|+.|+++++ .++...+. .++.+++|++|++++|. ++...+.....
T Consensus       393 ~~~L~~L~L~~n~l~~~----~p~~l-~~l~~L~~L~Ls~N-~l~~~~p~-~l~~l~~L~~L~L~~n~-l~~~~p~~~~~  464 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGK----IPPTL-SNCSELVSLHLSFN-YLSGTIPS-SLGSLSKLRDLKLWLNM-LEGEIPQELMY  464 (768)
T ss_dssp             TCCCCEEECCSSEEEEE----CCGGG-GGCTTCCEEECCSS-EEESCCCG-GGGGCTTCCEEECCSSC-CCSCCCGGGGG
T ss_pred             cCCccEEECCCCccccc----cCHHH-hcCCCCCEEECcCC-cccCcccH-HHhcCCCCCEEECCCCc-ccCcCCHHHcC
Confidence            34566666666655422    13333 45566666666654 33322222 24556666666666665 44322212211


Q ss_pred             CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcC
Q 036689          302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPE  381 (595)
Q Consensus       302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  381 (595)
                              +++|++|+++++.....++...  ..+++|+.|++++|.....+|.                        .+
T Consensus       465 --------l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~------------------------~~  510 (768)
T 3rgz_A          465 --------VKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPK------------------------WI  510 (768)
T ss_dssp             --------CTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCG------------------------GG
T ss_pred             --------CCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCccCCcCCh------------------------HH
Confidence                    5666666666654322222221  1256666666666654434444                        13


Q ss_pred             ccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeecccc----ccccccC---------------------------
Q 036689          382 KVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDAS----AAVVSSC---------------------------  430 (595)
Q Consensus       382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~----~l~~~~~---------------------------  430 (595)
                      +.+++|++|++++|+..+..+.  ....+++|+.|++++.+-    .-.+..+                           
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH  588 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred             hcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence            5677788888888776653332  234567777777754321    0000000                           


Q ss_pred             -----------------------------ccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCc
Q 036689          431 -----------------------------DNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGC  481 (595)
Q Consensus       431 -----------------------------~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  481 (595)
                                                   +.+....+..+..+++|+.|++++ +.++...+. .++.++.|++|+++++
T Consensus       589 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~-N~l~g~ip~-~l~~l~~L~~L~Ls~N  666 (768)
T 3rgz_A          589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY-NMLSGYIPK-EIGSMPYLFILNLGHN  666 (768)
T ss_dssp             SSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS-SCCBSCCCG-GGGGCTTCCEEECCSS
T ss_pred             ccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC-CcccccCCH-HHhccccCCEEeCcCC
Confidence                                         000111122333456666777766 345443332 3466667777777666


Q ss_pred             ccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCC
Q 036689          482 RAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTG  548 (595)
Q Consensus       482 ~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~  548 (595)
                      .-...+|...+.        +++|+.|+++++.--..+|...  ..+++|++|++++|+--+.+|.+
T Consensus       667 ~l~g~ip~~l~~--------L~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          667 DISGSIPDEVGD--------LRGLNILDLSSNKLDGRIPQAM--SALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CCCSCCCGGGGG--------CTTCCEEECCSSCCEECCCGGG--GGCCCCSEEECCSSEEEEECCSS
T ss_pred             ccCCCCChHHhC--------CCCCCEEECCCCcccCcCChHH--hCCCCCCEEECcCCcccccCCCc
Confidence            532344443333        6667777777653333555444  23666777777766444455544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=2.4e-27  Score=260.06  Aligned_cols=439  Identities=14%  Similarity=0.076  Sum_probs=280.5

Q ss_pred             cccccEEEeccCCCCccccc-cccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           21 IKDVEYLCLDKSQDVKNVLF-DLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        21 l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+++++|+++++... .+++ .+  .++++|++|++++| .++.+.+.     .+..+++|++|+++++ .++.+.  +.
T Consensus        31 ~~~l~~L~Ls~n~l~-~~~~~~~--~~l~~L~~L~Ls~n-~l~~i~~~-----~~~~l~~L~~L~Ls~n-~l~~~~--p~   98 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLK-ILKSYSF--SNFSELQWLDLSRC-EIETIEDK-----AWHGLHHLSNLILTGN-PIQSFS--PG   98 (606)
T ss_dssp             CTTCCEEECTTSCCC-EECTTTT--TTCTTCCEEECTTC-CCCEECTT-----TTTTCTTCCEEECTTC-CCCCCC--TT
T ss_pred             CCCcCEEECCCCCcC-EeChhhc--cCCccCcEEeCCCC-cccccCHH-----HhhchhhcCEeECCCC-cccccC--hh
Confidence            478999999999874 3333 34  89999999999999 78887554     5678999999999996 666653  33


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcc-eeecccCcccccccccccccccceEecCCCCCc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQ-EIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPEL  178 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  178 (595)
                      .++.+++|++|++++| .++.+++ ..++++++|++|++++|.... .+|          .....+++|++|+++++. +
T Consensus        99 ~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp----------~~~~~l~~L~~L~Ls~n~-l  165 (606)
T 3vq2_A           99 SFSGLTSLENLVAVET-KLASLES-FPIGQLITLKKLNVAHNFIHSCKLP----------AYFSNLTNLVHVDLSYNY-I  165 (606)
T ss_dssp             SSTTCTTCCEEECTTS-CCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCC----------GGGGTCTTCCEEECCSSC-C
T ss_pred             hcCCcccCCEEEccCC-ccccccc-cccCCCCCCCEEeCCCCcccceech----------HhHhhcCCCCEEEccCCc-c
Confidence            4789999999999996 6666654 458899999999999965332 233          235568999999999864 3


Q ss_pred             ccccccc--cccccc----ccccccccCccccccccccCCCccccccccCCccceeeccccccee-e-------------
Q 036689          179 TSFCCEV--KKNRQA----QGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEK-I-------------  238 (595)
Q Consensus       179 ~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~-------------  238 (595)
                      .......  ....+.    .+....+.        ....+...|    ...+|+.|++++|.+.. .             
T Consensus       166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~--------l~~~~~~~~----~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  233 (606)
T 3vq2_A          166 QTITVNDLQFLRENPQVNLSLDMSLNP--------IDFIQDQAF----QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV  233 (606)
T ss_dssp             CEECTTTTHHHHHCTTCCCEEECTTCC--------CCEECTTTT----TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEE
T ss_pred             eecChhhhhhhhccccccceeeccCCC--------cceeCcccc----cCceeeeeeccCCccchhHHHHHhcccccccc
Confidence            3332211  000110    01110000        001111112    13368888888774320 0             


Q ss_pred             ------------------------------------c----ccCCCccccccCCCccEEEEecCCCCccccchhhhhccC
Q 036689          239 ------------------------------------W----HNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFE  278 (595)
Q Consensus       239 ------------------------------------~----~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~  278 (595)
                                                          .    .+..|.  +..+++|+.|+++++ .++.++   .+..++
T Consensus       234 l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~-~~~~l~---~l~~~~  307 (606)
T 3vq2_A          234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGV-SIKYLE---DVPKHF  307 (606)
T ss_dssp             EEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESC-CCCCCC---CCCTTC
T ss_pred             ccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCc-cchhhh---hccccc
Confidence                                                0    000111  134566666666654 334433   235566


Q ss_pred             CCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccc
Q 036689          279 HLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELF  358 (595)
Q Consensus       279 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~  358 (595)
                      +|++|++++|. ++.++.  .         .+++|++|+++++..+......    .+++|+.|+++++.. +..+.   
T Consensus       308 ~L~~L~l~~n~-l~~lp~--~---------~l~~L~~L~l~~n~~~~~~~~~----~l~~L~~L~ls~n~l-~~~~~---  367 (606)
T 3vq2_A          308 KWQSLSIIRCQ-LKQFPT--L---------DLPFLKSLTLTMNKGSISFKKV----ALPSLSYLDLSRNAL-SFSGC---  367 (606)
T ss_dssp             CCSEEEEESCC-CSSCCC--C---------CCSSCCEEEEESCSSCEECCCC----CCTTCCEEECCSSCE-EEEEE---
T ss_pred             cCCEEEccccc-Cccccc--C---------CCCccceeeccCCcCccchhhc----cCCCCCEEECcCCcc-CCCcc---
Confidence            66666666666 444442  1         1666777777666544443222    266777777766532 22210   


Q ss_pred             cccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCC
Q 036689          359 SFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLP  438 (595)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~  438 (595)
                                        ....+..+++|++|++++|....+.   .....+++|+.|++.          .+.+....+
T Consensus       368 ------------------~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~----------~n~l~~~~~  416 (606)
T 3vq2_A          368 ------------------CSYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQ----------HSTLKRVTE  416 (606)
T ss_dssp             ------------------CCHHHHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECT----------TSEEESTTT
T ss_pred             ------------------hhhhhccCCcccEeECCCCccccch---hhccCCCCCCeeECC----------CCccCCccC
Confidence                              0012356788888888888755433   234467888888884          345665555


Q ss_pred             -CCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccc-hhcccCccccccccccccccceeccccccc
Q 036689          439 -SSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQ-VVKSEGNQLAREEIVFNKLKMLSLLDLDSL  516 (595)
Q Consensus       439 -~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~-i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l  516 (595)
                       ..+..+++|+.|++++|. +....+ ..++.+++|++|++++|. +.. +......       .+++|+.|++++| .+
T Consensus       417 ~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~-------~l~~L~~L~Ls~n-~l  485 (606)
T 3vq2_A          417 FSAFLSLEKLLYLDISYTN-TKIDFD-GIFLGLTSLNTLKMAGNS-FKDNTLSNVFA-------NTTNLTFLDLSKC-QL  485 (606)
T ss_dssp             TTTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCE-EGGGEECSCCT-------TCTTCCEEECTTS-CC
T ss_pred             hhhhhccccCCEEECcCCC-CCccch-hhhcCCCCCCEEECCCCc-CCCcchHHhhc-------cCCCCCEEECCCC-cC
Confidence             567789999999999964 555433 345788999999999997 444 2222222       4899999999997 56


Q ss_pred             cccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCCC
Q 036689          517 TSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGA  565 (595)
Q Consensus       517 ~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~~  565 (595)
                      +.++.... ..+++|++|++++|.-....|..+..+++|+++++++|.-
T Consensus       486 ~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l  533 (606)
T 3vq2_A          486 EQISWGVF-DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI  533 (606)
T ss_dssp             CEECTTTT-TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred             CccChhhh-cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence            66654332 3589999999999854444478888899999999998766

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=4.5e-27  Score=266.98  Aligned_cols=476  Identities=15%  Similarity=0.122  Sum_probs=250.0

Q ss_pred             ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689            2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL   80 (595)
Q Consensus         2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L   80 (595)
                      +.|+|.+|.+ .+.+..|+.+++|++|+++++.....+.+.. .+.+++|++|+|++| .++.+.+.     .+..+++|
T Consensus        27 ~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N-~l~~~~p~-----~~~~l~~L   99 (844)
T 3j0a_A           27 ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSS-KIYFLHPD-----AFQGLFHL   99 (844)
T ss_dssp             CEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTC-CCCEECTT-----SSCSCSSC
T ss_pred             CEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCC-cCcccCHh-----HccCCccc
Confidence            5788888876 3447778889999999999997655553322 388999999999998 68777554     57789999


Q ss_pred             cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccc
Q 036689           81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQ  160 (595)
Q Consensus        81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  160 (595)
                      ++|+++++ .+.........+..+++|++|++++| .++..++...++++++|++|++++|. +..+..         ..
T Consensus       100 ~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~---------~~  167 (844)
T 3j0a_A          100 FELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCE---------HE  167 (844)
T ss_dssp             CCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCS---------GG
T ss_pred             CEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCc-CCeeCH---------HH
Confidence            99999996 56542222223678999999999995 56666554678899999999999854 332211         11


Q ss_pred             cccc--cccceEecCCCCCccccccccc-------ccccccccccccc--Cccc-cccccccCC-C-c------------
Q 036689          161 KIEF--GQLSTLCLGSLPELTSFCCEVK-------KNRQAQGMHETCS--NKIS-SLEDKLDIS-S-P------------  214 (595)
Q Consensus       161 ~~~~--~~L~~L~l~~~~~l~~~~~~~~-------~~~~~~~~~~~~~--~~~~-~~~~~~~~~-~-~------------  214 (595)
                      ...+  ++|+.|+++++.-....+....       ...+..+....+.  +..+ .+....... . .            
T Consensus       168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~  247 (844)
T 3j0a_A          168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF  247 (844)
T ss_dssp             GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred             cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence            1122  5677777766543222211100       0001111111110  0000 000000000 0 0            


Q ss_pred             -----------cccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEE
Q 036689          215 -----------LFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHL  283 (595)
Q Consensus       215 -----------~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L  283 (595)
                                 .|.+ ...++|+.|++++|.+..+.    +.. +..+++|+.|+++++ .++.+.+. .+..+++|++|
T Consensus       248 ~~~~l~~~~~~~f~~-l~~~~L~~L~Ls~n~l~~~~----~~~-~~~l~~L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L  319 (844)
T 3j0a_A          248 GFHNIKDPDQNTFAG-LARSSVRHLDLSHGFVFSLN----SRV-FETLKDLKVLNLAYN-KINKIADE-AFYGLDNLQVL  319 (844)
T ss_dssp             SCSSSTTGGGTTTTT-TTTSCCCEEECTTCCCCEEC----SCC-SSSCCCCCEEEEESC-CCCEECTT-TTTTCSSCCEE
T ss_pred             cccccCCCChhhhhc-cccCCccEEECCCCcccccC----hhh-hhcCCCCCEEECCCC-cCCCCChH-HhcCCCCCCEE
Confidence                       0000 01246677777766655442    121 245677777777764 44444332 34666777777


Q ss_pred             EeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCC
Q 036689          284 EIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCES  363 (595)
Q Consensus       284 ~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~  363 (595)
                      ++++|. ++.+.+..+.+        +++|+.|+++++ .+..++... ...+++|+.|+++++. ++.+          
T Consensus       320 ~Ls~N~-l~~~~~~~~~~--------l~~L~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~i----------  377 (844)
T 3j0a_A          320 NLSYNL-LGELYSSNFYG--------LPKVAYIDLQKN-HIAIIQDQT-FKFLEKLQTLDLRDNA-LTTI----------  377 (844)
T ss_dssp             EEESCC-CSCCCSCSCSS--------CTTCCEEECCSC-CCCCCCSSC-SCSCCCCCEEEEETCC-SCCC----------
T ss_pred             ECCCCC-CCccCHHHhcC--------CCCCCEEECCCC-CCCccChhh-hcCCCCCCEEECCCCC-CCcc----------
Confidence            777766 55554433322        667777777764 344443321 1225677777776653 2211          


Q ss_pred             CCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCC-------------------CCcccccCceeEEeeccccc
Q 036689          364 SEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGD-------------------FPQHLFGGLKVLQLKFDASA  424 (595)
Q Consensus       364 ~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-------------------~~~~~~~~L~~L~L~~~~~~  424 (595)
                                        ..+++|+.|++++|+...+....                   .....+++|+.|++++    
T Consensus       378 ------------------~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~----  435 (844)
T 3j0a_A          378 ------------------HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ----  435 (844)
T ss_dssp             ------------------SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES----
T ss_pred             ------------------cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCC----
Confidence                              12455555555555433221100                   0011334444444422    


Q ss_pred             cccccCccccccCCC-CccccCCccEEeEeCCCCCccccc----chHHhhcccccEEEEcCcccccchhcccCccccccc
Q 036689          425 AVVSSCDNLLILLPS-SSVSFRNLKILEVSGCKKLTNLVA----SSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREE  499 (595)
Q Consensus       425 l~~~~~~~l~~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~----~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~  499 (595)
                            +.+...++. ....+++|+.|++++ +.++....    ...++.+++|++|++++|. ++.++.....      
T Consensus       436 ------N~l~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~------  501 (844)
T 3j0a_A          436 ------NRFSSCSGDQTPSENPSLEQLFLGE-NMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVFS------  501 (844)
T ss_dssp             ------CCCCCCCSSSSSCSCTTCCBCEEES-CCCSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCTTSSS------
T ss_pred             ------CcccccccccccccCCccccccCCC-CccccccccccchhhhcCcccccEEECCCCc-ccccChhHcc------
Confidence                  222222111 122345555555555 23321110    1123445555555555553 4444433222      


Q ss_pred             cccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCCCccccCc
Q 036689          500 IVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGAPCWDGD  571 (595)
Q Consensus       500 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~~~~~~~~  571 (595)
                       .+++|+.|+++++ .++.++.+..   .++|+.|+++++ +++.++...  +++|+.+++.+|. |.|+.+
T Consensus       502 -~l~~L~~L~Ls~N-~l~~l~~~~~---~~~L~~L~Ls~N-~l~~~~~~~--~~~L~~l~l~~Np-~~C~c~  564 (844)
T 3j0a_A          502 -HLTALRGLSLNSN-RLTVLSHNDL---PANLEILDISRN-QLLAPNPDV--FVSLSVLDITHNK-FICECE  564 (844)
T ss_dssp             -SCCSCSEEEEESC-CCSSCCCCCC---CSCCCEEEEEEE-CCCCCCSCC--CSSCCEEEEEEEC-CCCSSS
T ss_pred             -chhhhheeECCCC-CCCccChhhh---hccccEEECCCC-cCCCCChhH--hCCcCEEEecCCC-cccccc
Confidence             3566666666663 5665554442   256666666665 344443322  4567777777543 444433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=2.1e-26  Score=256.14  Aligned_cols=128  Identities=13%  Similarity=0.098  Sum_probs=95.2

Q ss_pred             ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689            2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL   80 (595)
Q Consensus         2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L   80 (595)
                      +.|+|..|.+ .+.++.++.+++|++|+++++.. ..+++. ..+.+++|++|++++| .++.+++.     .+..+++|
T Consensus        52 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-----~~~~l~~L  123 (680)
T 1ziw_A           52 TSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDK-TFAFCTNLTELHLMSN-SIQKIKNN-----PFVKQKNL  123 (680)
T ss_dssp             SEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-CCCCTT-TTTTCTTCSEEECCSS-CCCCCCSC-----TTTTCTTC
T ss_pred             cEEECCCCccCccCHHHHhcccCcCEEECCCCcc-CccChh-hhccCCCCCEEECCCC-ccCccChh-----HccccCCC
Confidence            5677777765 34477777899999999999876 344442 1278999999999998 67766443     56788999


Q ss_pred             cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhh--hcCCCCcEEEEcccC
Q 036689           81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA--KCLPRLERIAVINCR  142 (595)
Q Consensus        81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~--~~l~~L~~L~l~~c~  142 (595)
                      ++|+++++ .+....  +..++.+++|++|++++| .++..++ ..+  ..+++|++|++++|.
T Consensus       124 ~~L~Ls~n-~l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          124 ITLDLSHN-GLSSTK--LGTQVQLENLQELLLSNN-KIQALKS-EELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CEEECCSS-CCSCCC--CCSSSCCTTCCEEECCSS-CCCCBCH-HHHGGGTTCEESEEECTTCC
T ss_pred             CEEECCCC-cccccC--chhhcccccCCEEEccCC-cccccCH-HHhhccccccccEEECCCCc
Confidence            99999996 565542  223678999999999995 5676654 333  356899999999864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=8.4e-27  Score=253.85  Aligned_cols=462  Identities=16%  Similarity=0.151  Sum_probs=275.1

Q ss_pred             ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689            2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL   80 (595)
Q Consensus         2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L   80 (595)
                      +.|+|+.|.+ .+.+..|+.+++|++|++++|.. ..+++.. .+++++|++|+++++ .++.+++.     .+..+++|
T Consensus        31 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i-~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~~~-----~~~~l~~L  102 (570)
T 2z63_A           31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGA-YQSLSHLSTLILTGN-PIQSLALG-----AFSGLSSL  102 (570)
T ss_dssp             CEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC-CEECTTT-TTTCTTCCEEECTTC-CCCEECTT-----TTTTCTTC
T ss_pred             cEEEccCCccCccChhHhhCCCCceEEECCCCcC-CccCccc-ccCchhCCEEeCcCC-cCCccCHh-----hhcCcccc
Confidence            4566666654 23355566777788888877755 3333221 267778888888777 56666443     45667778


Q ss_pred             cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccc
Q 036689           81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQ  160 (595)
Q Consensus        81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~  160 (595)
                      ++|+++++ .++.+...  +++.+++|++|++++| .++.+..+..++++++|++|++++|. +..++..         .
T Consensus       103 ~~L~L~~n-~l~~l~~~--~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~---------~  168 (570)
T 2z63_A          103 QKLVAVET-NLASLENF--PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCT---------D  168 (570)
T ss_dssp             CEEECTTS-CCCCSTTC--SCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGG---------G
T ss_pred             cccccccc-ccccCCCc--cccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-cceecHH---------H
Confidence            88888775 56555322  3667778888888874 45543222567777888888887743 3333211         1


Q ss_pred             ccccccc----ceEecCCCCCcccccccc-cccccccccccccc--------------Cc---------cccccccccCC
Q 036689          161 KIEFGQL----STLCLGSLPELTSFCCEV-KKNRQAQGMHETCS--------------NK---------ISSLEDKLDIS  212 (595)
Q Consensus       161 ~~~~~~L----~~L~l~~~~~l~~~~~~~-~~~~~~~~~~~~~~--------------~~---------~~~~~~~~~~~  212 (595)
                      ...+.+|    +.|+++++. +..+..+. ....+..+....+.              +.         ...........
T Consensus       169 ~~~l~~L~~~~~~L~l~~n~-l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~  247 (570)
T 2z63_A          169 LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD  247 (570)
T ss_dssp             GHHHHTCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred             ccchhccchhhhhcccCCCC-ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence            1223333    344444332 11111100 00001111000000              00         00000000111


Q ss_pred             CccccccccCCccceeecccc-cceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeeccccc
Q 036689          213 SPLFNEKVALSNLEVLEMNKV-NIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGL  291 (595)
Q Consensus       213 ~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l  291 (595)
                      ...+.....+ .++.+++.++ .+...    .|..+ ..+++|+.|+++++ .++.++.  .+..+ +|++|++++|. +
T Consensus       248 ~~~~~~l~~l-~l~~l~l~~~~~~~~~----~~~~~-~~l~~L~~L~l~~~-~l~~l~~--~~~~~-~L~~L~l~~n~-~  316 (570)
T 2z63_A          248 KSALEGLCNL-TIEEFRLAYLDYYLDD----IIDLF-NCLTNVSSFSLVSV-TIERVKD--FSYNF-GWQHLELVNCK-F  316 (570)
T ss_dssp             TTTTGGGGGS-EEEEEEEEETTEEESC----STTTT-GGGTTCSEEEEESC-EECSCCB--CCSCC-CCSEEEEESCB-C
T ss_pred             hhhhcccccc-chhhhhhhcchhhhhh----chhhh-cCcCcccEEEecCc-cchhhhh--hhccC-CccEEeeccCc-c
Confidence            1111111111 2344444444 32222    23333 56788999999876 4555433  24566 88999998887 6


Q ss_pred             ceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccc--cccccccccCCCCCCCC
Q 036689          292 QEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTV--FDSELFSFCESSEEDKP  369 (595)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~~~~~~~~~  369 (595)
                      ..++..           .+++|++|++.++......+.    ..+++|+.|+++++..-..  .+.              
T Consensus       317 ~~l~~~-----------~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~--------------  367 (570)
T 2z63_A          317 GQFPTL-----------KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQ--------------  367 (570)
T ss_dssp             SSCCBC-----------BCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEH--------------
T ss_pred             cccCcc-----------cccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCccccccc--------------
Confidence            655441           288899999988764433332    3388999999988753221  122              


Q ss_pred             CCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCC-CCccccCCcc
Q 036689          370 DIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLP-SSSVSFRNLK  448 (595)
Q Consensus       370 ~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~-~~~~~l~~L~  448 (595)
                                .+..+++|++|++++|...++...   ...+++|+.|++.+          +.+....+ ..+..+++|+
T Consensus       368 ----------~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~----------n~l~~~~~~~~~~~l~~L~  424 (570)
T 2z63_A          368 ----------SDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQH----------SNLKQMSEFSVFLSLRNLI  424 (570)
T ss_dssp             ----------HHHTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTT----------SEEESCTTSCTTTTCTTCC
T ss_pred             ----------cccccCccCEEECCCCcccccccc---ccccCCCCEEEccC----------CccccccchhhhhcCCCCC
Confidence                      135689999999999986654332   44678899999943          44555443 4567899999


Q ss_pred             EEeEeCCCCCcccccchHHhhcccccEEEEcCccccc--chhcccCccccccccccccccceecccccccccc-ccCccc
Q 036689          449 ILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMT--QVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSF-CSGNYI  525 (595)
Q Consensus       449 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~--~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~  525 (595)
                      .|++++| .+....+ ..+..+++|++|++++|. +.  .++....        .+++|+.|++++| .++.+ +...  
T Consensus       425 ~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~--------~l~~L~~L~l~~n-~l~~~~~~~~--  490 (570)
T 2z63_A          425 YLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNS-FQENFLPDIFT--------ELRNLTFLDLSQC-QLEQLSPTAF--  490 (570)
T ss_dssp             EEECTTS-CCEECCT-TTTTTCTTCCEEECTTCE-EGGGEECSCCT--------TCTTCCEEECTTS-CCCEECTTTT--
T ss_pred             EEeCcCC-cccccch-hhhhcCCcCcEEECcCCc-Cccccchhhhh--------cccCCCEEECCCC-ccccCChhhh--
Confidence            9999996 4555433 445789999999999997 43  3443333        3899999999997 56666 4333  


Q ss_pred             ccCCCccEEEEeCCCCccccCC-CCCCCCCcceEEeccCC
Q 036689          526 FKFPSLEVLFVVGCPKMNIFTT-GELSTPPRVDVMYRNRG  564 (595)
Q Consensus       526 ~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~i~~~~  564 (595)
                      ..+++|++|++++| +++.+|. .+.++++|+++++++|.
T Consensus       491 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          491 NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence            35899999999998 6777764 56789999999998754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=251.17  Aligned_cols=444  Identities=13%  Similarity=0.077  Sum_probs=281.1

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      ..+++++|+++++.........+  .++++|++|++++| .++.+.+.     .+..+++|++|+++++ .++.+..  .
T Consensus        26 l~~~l~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n-~i~~i~~~-----~~~~l~~L~~L~L~~n-~l~~~~~--~   94 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLGSYSF--FSFPELQVLDLSRC-EIQTIEDG-----AYQSLSHLSTLILTGN-PIQSLAL--G   94 (570)
T ss_dssp             SCSSCCEEECCSCCCCEECTTTT--TTCSSCCEEECTTC-CCCEECTT-----TTTTCTTCCEEECTTC-CCCEECT--T
T ss_pred             ccccccEEEccCCccCccChhHh--hCCCCceEEECCCC-cCCccCcc-----cccCchhCCEEeCcCC-cCCccCH--h
Confidence            34689999999998743222234  78999999999999 78887554     5678999999999996 6766532  3


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcc-eeecccCcccccccccccccccceEecCCCCCc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQ-EIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPEL  178 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  178 (595)
                      .++.+++|++|+++++ .++.++. ..++++++|++|++++|.... .+|          .....+++|++|+++++.- 
T Consensus        95 ~~~~l~~L~~L~L~~n-~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp----------~~~~~l~~L~~L~l~~n~l-  161 (570)
T 2z63_A           95 AFSGLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNLIQSFKLP----------EYFSNLTNLEHLDLSSNKI-  161 (570)
T ss_dssp             TTTTCTTCCEEECTTS-CCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCC----------GGGGGCTTCCEEECTTSCC-
T ss_pred             hhcCcccccccccccc-ccccCCC-ccccccccccEEecCCCccceecCh----------hhhcccCCCCEEeCcCCcc-
Confidence            4788999999999995 6777654 347899999999999964322 123          2345689999999988642 


Q ss_pred             cccccc-c-ccccc----cccccccccCccccccccccCCCccccccccCCccceeecccccce--ee------------
Q 036689          179 TSFCCE-V-KKNRQ----AQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIE--KI------------  238 (595)
Q Consensus       179 ~~~~~~-~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~~------------  238 (595)
                      ..++.. . ....+    ..+....+.        ........|.    ..+|+.|+++++...  .+            
T Consensus       162 ~~~~~~~~~~l~~L~~~~~~L~l~~n~--------l~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~  229 (570)
T 2z63_A          162 QSIYCTDLRVLHQMPLLNLSLDLSLNP--------MNFIQPGAFK----EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV  229 (570)
T ss_dssp             CEECGGGGHHHHTCTTCCCEEECTTCC--------CCEECTTTTT----TCEEEEEEEESCCSCTTHHHHHHHTTTTCEE
T ss_pred             ceecHHHccchhccchhhhhcccCCCC--------ceecCHHHhc----cCcceeEecccccccccchhhhhcCccccce
Confidence            222211 0 00000    000000000        0000011111    224666665554100  00            


Q ss_pred             ---cc---------cCCCccccccCC--CccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCC
Q 036689          239 ---WH---------NQLPVAMFLCFQ--NLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQV  304 (595)
Q Consensus       239 ---~~---------~~~~~~~~~~l~--~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  304 (595)
                         +.         ..++...+..++  .++.+++.++..+....+ ..+..+++|++|+++++. ++.++.. ..    
T Consensus       230 ~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-l~~l~~~-~~----  302 (570)
T 2z63_A          230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVT-IERVKDF-SY----  302 (570)
T ss_dssp             EEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCE-ECSCCBC-CS----
T ss_pred             eeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCcc-chhhhhh-hc----
Confidence               00         000100001111  234444444433333222 235677888888888887 6665441 11    


Q ss_pred             CCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccC
Q 036689          305 PPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVF  384 (595)
Q Consensus       305 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  384 (595)
                          .+ +|++|++.++. +..++..    .+++|+.|.+.++.....++.                          ..+
T Consensus       303 ----~~-~L~~L~l~~n~-~~~l~~~----~l~~L~~L~l~~n~~~~~~~~--------------------------~~~  346 (570)
T 2z63_A          303 ----NF-GWQHLELVNCK-FGQFPTL----KLKSLKRLTFTSNKGGNAFSE--------------------------VDL  346 (570)
T ss_dssp             ----CC-CCSEEEEESCB-CSSCCBC----BCSSCCEEEEESCBSCCBCCC--------------------------CBC
T ss_pred             ----cC-CccEEeeccCc-ccccCcc----cccccCEEeCcCCcccccccc--------------------------ccC
Confidence                15 88888888865 4444432    378888888888764433332                          578


Q ss_pred             CCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccc
Q 036689          385 PNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVAS  464 (595)
Q Consensus       385 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  464 (595)
                      ++|++|++++|..............+++|+.|++.+          +.+..+++ .+..+++|+.|+++++ .+...++.
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~----------n~l~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~  414 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF----------NGVITMSS-NFLGLEQLEHLDFQHS-NLKQMSEF  414 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCS----------CSEEEEEE-EEETCTTCCEEECTTS-EEESCTTS
T ss_pred             CCCCEEeCcCCccCccccccccccccCccCEEECCC----------Cccccccc-cccccCCCCEEEccCC-ccccccch
Confidence            999999999997654311011233568899999953          44666555 3778999999999995 45555444


Q ss_pred             hHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccc-cccccCcccccCCCccEEEEeCCCCcc
Q 036689          465 SAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSL-TSFCSGNYIFKFPSLEVLFVVGCPKMN  543 (595)
Q Consensus       465 ~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~~~~~~L~~L~l~~C~~l~  543 (595)
                      ..+..+++|++|++++|. +.........       .+++|+.|++.+|.-. ..+|...  ..+++|++|++++|. ++
T Consensus       415 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~p~~~--~~l~~L~~L~l~~n~-l~  483 (570)
T 2z63_A          415 SVFLSLRNLIYLDISHTH-TRVAFNGIFN-------GLSSLEVLKMAGNSFQENFLPDIF--TELRNLTFLDLSQCQ-LE  483 (570)
T ss_dssp             CTTTTCTTCCEEECTTSC-CEECCTTTTT-------TCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTSC-CC
T ss_pred             hhhhcCCCCCEEeCcCCc-ccccchhhhh-------cCCcCcEEECcCCcCccccchhhh--hcccCCCEEECCCCc-cc
Confidence            456789999999999997 5554333222       4899999999997533 2466544  358999999999985 55


Q ss_pred             cc-CCCCCCCCCcceEEeccCCC
Q 036689          544 IF-TTGELSTPPRVDVMYRNRGA  565 (595)
Q Consensus       544 ~l-p~~~~~~~~L~~l~i~~~~~  565 (595)
                      .+ |..+..+++|+++++++|.-
T Consensus       484 ~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          484 QLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCC
T ss_pred             cCChhhhhcccCCCEEeCCCCcC
Confidence            55 77888899999999997754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=2.2e-26  Score=252.94  Aligned_cols=437  Identities=14%  Similarity=0.096  Sum_probs=281.9

Q ss_pred             cccc--ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceE---ecCCCCC--------------------
Q 036689           16 KKLQ--GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMC---IVDSKER--------------------   70 (595)
Q Consensus        16 ~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~---i~~~~~~--------------------   70 (595)
                      .|+.  .-.+++.|+|.++...+.+++.+  +.+++|++|+|++|. +..   .+.....                    
T Consensus        73 ~GV~C~~~~~V~~L~L~~~~l~g~lp~~l--~~L~~L~~L~Ls~N~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~  149 (636)
T 4eco_A           73 PGVSLNSNGRVTGLSLEGFGASGRVPDAI--GQLTELEVLALGSHG-EKVNERLFGPKGISANMSDEQKQKMRMHYQKTF  149 (636)
T ss_dssp             TTEEECTTCCEEEEECTTSCCEEEECGGG--GGCTTCCEEESCCGG-GGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHH
T ss_pred             CCeEEcCCCCEEEEEecCcccCCcCChHH--hcCccceEEECcCCc-cccCCccccccccccCchHHHHHHHHhhHHHhh
Confidence            5565  12479999999998877777766  899999999998883 210   0000000                    


Q ss_pred             ---------C---------------CcCCcCCCccEEeccC-ccCccccccccccccCCCCccEEEecCCCCccc-----
Q 036689           71 ---------V---------------PLDDAFPILESLNLYN-LIKLERICQDRLSVQSFNELKTIRVELCDQLSN-----  120 (595)
Q Consensus        71 ---------~---------------~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----  120 (595)
                               .               ........++.+.+.. +.+++.+   |..++.+++|++|+++++ .++.     
T Consensus       150 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~i---p~~l~~l~~L~~L~Ls~n-~l~~~~~~~  225 (636)
T 4eco_A          150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV---SKAVMRLTKLRQFYMGNS-PFVAENICE  225 (636)
T ss_dssp             TCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE---CGGGGGCTTCCEEEEESC-CCCGGGBSS
T ss_pred             hccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccC---CHHHhcccCCCEEECcCC-ccccccccc
Confidence                     0               0000111222222222 2344444   344788899999999985 4776     


Q ss_pred             -------------ccchhhhh--cCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc--ccc
Q 036689          121 -------------IFLLSAAK--CLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS--FCC  183 (595)
Q Consensus       121 -------------~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~  183 (595)
                                   +|  ..+.  ++++|++|++++|.....+|.          .+..+++|+.|+++++..+..  ++.
T Consensus       226 ~~~~~~~~~~~~~ip--~~l~~~~l~~L~~L~L~~n~l~~~~p~----------~l~~l~~L~~L~Ls~n~~l~~~~lp~  293 (636)
T 4eco_A          226 AWENENSEYAQQYKT--EDLKWDNLKDLTDVEVYNCPNLTKLPT----------FLKALPEMQLINVACNRGISGEQLKD  293 (636)
T ss_dssp             SCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEECCTTCSSCCT----------TTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred             cccccccchhcccCc--hhhhhcccCCCCEEEecCCcCCccChH----------HHhcCCCCCEEECcCCCCCccccchH
Confidence                         44  5566  889999999998876666652          345678899999888764442  332


Q ss_pred             ccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCc--cccccCCCccEEEEec
Q 036689          184 EVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPV--AMFLCFQNLTRLILRK  261 (595)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~--~~~~~l~~L~~L~L~~  261 (595)
                      ...                            -+.....+++|++|++++|+++.+     |.  .+ ..+++|+.|++++
T Consensus       294 ~~~----------------------------~L~~~~~l~~L~~L~L~~n~l~~i-----p~~~~l-~~l~~L~~L~L~~  339 (636)
T 4eco_A          294 DWQ----------------------------ALADAPVGEKIQIIYIGYNNLKTF-----PVETSL-QKMKKLGMLECLY  339 (636)
T ss_dssp             HHH----------------------------HHHHSGGGGTCCEEECCSSCCSSC-----CCHHHH-TTCTTCCEEECCS
T ss_pred             HHH----------------------------hhhccccCCCCCEEECCCCcCCcc-----Cchhhh-ccCCCCCEEeCcC
Confidence            110                            000012347899999998877755     66  44 6788999999987


Q ss_pred             CCCCc-cccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCc-ccEEeecCCCCcccccCCCccccCccc
Q 036689          262 CPKLK-YIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQ-VTILRLVGLPELKCLYPGMHTSEWPAL  339 (595)
Q Consensus       262 c~~l~-~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~~l~~~~~~~~~~~~~~L  339 (595)
                      + .++ .++   .++.+++|++|++++|. ++.++. ...        .+++ |++|+++++. +..++.......+++|
T Consensus       340 N-~l~g~ip---~~~~l~~L~~L~L~~N~-l~~lp~-~l~--------~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L  404 (636)
T 4eco_A          340 N-QLEGKLP---AFGSEIKLASLNLAYNQ-ITEIPA-NFC--------GFTEQVENLSFAHNK-LKYIPNIFDAKSVSVM  404 (636)
T ss_dssp             C-CCEEECC---CCEEEEEESEEECCSSE-EEECCT-TSE--------EECTTCCEEECCSSC-CSSCCSCCCTTCSSCE
T ss_pred             C-cCccchh---hhCCCCCCCEEECCCCc-cccccH-hhh--------hhcccCcEEEccCCc-CcccchhhhhcccCcc
Confidence            6 455 543   35788899999999887 776654 222        2777 9999998865 5566554333335588


Q ss_pred             ceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEee
Q 036689          340 KLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLK  419 (595)
Q Consensus       340 ~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~  419 (595)
                      +.|+++++......|..++..                 ....-.+++|++|++++|....+...  ....+++|+.|+++
T Consensus       405 ~~L~Ls~N~l~~~~p~~l~~~-----------------~~~~~~~~~L~~L~Ls~N~l~~lp~~--~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKNFDPL-----------------DPTPFKGINVSSINLSNNQISKFPKE--LFSTGSPLSSINLM  465 (636)
T ss_dssp             EEEECCSSCTTTTTTCSSCTT-----------------CSSCCCCCCEEEEECCSSCCCSCCTH--HHHTTCCCSEEECC
T ss_pred             CEEECcCCcCCCcchhhhccc-----------------ccccccCCCCCEEECcCCccCcCCHH--HHccCCCCCEEECC
Confidence            999998886555444411100                 00001456889999998875532110  11246788888884


Q ss_pred             ccccccccccCccccccCCCCcccc-------CCccEEeEeCCCCCcccccchHH-hhcccccEEEEcCcccccchhccc
Q 036689          420 FDASAAVVSSCDNLLILLPSSSVSF-------RNLKILEVSGCKKLTNLVASSAA-QSLVALVKMQVFGCRAMTQVVKSE  491 (595)
Q Consensus       420 ~~~~~l~~~~~~~l~~~~~~~~~~l-------~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~l~~c~~l~~i~~~~  491 (595)
                                .+.+..++...+...       ++|+.|++++ +.++.++ ..+. ..+++|++|++++|. ++.++...
T Consensus       466 ----------~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp-~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~  532 (636)
T 4eco_A          466 ----------GNMLTEIPKNSLKDENENFKNTYLLTSIDLRF-NKLTKLS-DDFRATTLPYLVGIDLSYNS-FSKFPTQP  532 (636)
T ss_dssp             ----------SSCCSBCCSSSSEETTEECTTGGGCCEEECCS-SCCCBCC-GGGSTTTCTTCCEEECCSSC-CSSCCCGG
T ss_pred             ----------CCCCCCcCHHHhccccccccccCCccEEECcC-CcCCccC-hhhhhccCCCcCEEECCCCC-CCCcChhh
Confidence                      355665555433332       3899999998 4677663 3332 488999999999987 66666544


Q ss_pred             Cccccccccccccccceeccc------cccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCCC
Q 036689          492 GNQLAREEIVFNKLKMLSLLD------LDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGA  565 (595)
Q Consensus       492 ~~~~~~~~~~l~~L~~L~l~~------~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~~  565 (595)
                      ..        +++|+.|++++      +.-...+|....  .+++|++|++++|. ++.+|..+.  ++|+++++++|..
T Consensus       533 ~~--------l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~--~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l  599 (636)
T 4eco_A          533 LN--------SSTLKGFGIRNQRDAQGNRTLREWPEGIT--LCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDNPN  599 (636)
T ss_dssp             GG--------CSSCCEEECCSCBCTTCCBCCCCCCTTGG--GCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSCTT
T ss_pred             hc--------CCCCCEEECCCCcccccCcccccChHHHh--cCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCCCC
Confidence            44        88999999954      333456665553  48999999999984 588888765  8999999998765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1.5e-26  Score=250.70  Aligned_cols=455  Identities=14%  Similarity=0.094  Sum_probs=264.3

Q ss_pred             cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689           21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS  100 (595)
Q Consensus        21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  100 (595)
                      .++|++|+++++......+..+  +++++|++|++++| .++.+.+.     .+..+++|++|+++++ .+..+..  ..
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n-~i~~~~~~-----~~~~l~~L~~L~Ls~n-~l~~~~~--~~   93 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSS-RINTIEGD-----AFYSLGSLEHLDLSDN-HLSSLSS--SW   93 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTT--SSCTTCCEEECTTS-CCCEECTT-----TTTTCTTCCEEECTTS-CCCSCCH--HH
T ss_pred             CCCccEEECcCCccCccChhhh--hcCCcccEEECCCC-CcCccChh-----hccccccCCEEECCCC-ccCccCH--HH
Confidence            4688999998887633222234  78899999999888 67777544     5667888999999986 6665522  22


Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS  180 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  180 (595)
                      ++.+++|++|++++| .++.+.....++++++|++|++++|..+..++..         ....+++|++|+++++.--..
T Consensus        94 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---------~~~~l~~L~~L~L~~n~l~~~  163 (549)
T 2z81_A           94 FGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---------DFAGLTSLNELEIKALSLRNY  163 (549)
T ss_dssp             HTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---------TTTTCCEEEEEEEEETTCCEE
T ss_pred             hccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHh---------hhhcccccCeeeccCCccccc
Confidence            678889999999885 5664433356778889999999887766665421         234567788888876543222


Q ss_pred             ccccc-ccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689          181 FCCEV-KKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL  259 (595)
Q Consensus       181 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L  259 (595)
                      .+... ....+..+....+...        ..+...   ...+++|++|++++|+++.......+  +...+++|+.|++
T Consensus       164 ~~~~l~~l~~L~~L~l~~n~~~--------~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~L~~L~l  230 (549)
T 2z81_A          164 QSQSLKSIRDIHHLTLHLSESA--------FLLEIF---ADILSSVRYLELRDTNLARFQFSPLP--VDEVSSPMKKLAF  230 (549)
T ss_dssp             CTTTTTTCSEEEEEEEECSBST--------THHHHH---HHSTTTBSEEEEESCBCTTCCCCCCS--SCCCCCCCCEEEE
T ss_pred             ChhhhhccccCceEecccCccc--------ccchhh---HhhcccccEEEccCCccccccccccc--hhhhhhcccceec
Confidence            22111 0111111111111000        000000   11367888888888866554211111  1134677888888


Q ss_pred             ecCCCCccccchh---hhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC--------------
Q 036689          260 RKCPKLKYIFSAS---MLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP--------------  322 (595)
Q Consensus       260 ~~c~~l~~l~~~~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--------------  322 (595)
                      +++ .+++..+..   .+..+++|+.+++++|. +..+.......  ......+++|+.|.+.++.              
T Consensus       231 ~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~  306 (549)
T 2z81_A          231 RGS-VLTDESFNELLKLLRYILELSEVEFDDCT-LNGLGDFNPSE--SDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY  306 (549)
T ss_dssp             ESC-EEEHHHHHHHHGGGGGCTTCCEEEEESCE-EECCSCCCCCT--TTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred             ccc-ccchhHHHHHHHHhhhhcccccccccccc-ccccccccccc--hhhhhhhcccccccccccccchhhhcccchhhh
Confidence            765 333321111   23556778888888876 44432111000  0011124555555555432              


Q ss_pred             --------------CcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcc
Q 036689          323 --------------ELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLE  388 (595)
Q Consensus       323 --------------~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~  388 (595)
                                    .+..++... ...+++|+.|+++++.....+|..                     ....+.+++|+
T Consensus       307 ~~~~~L~~L~l~~n~l~~ip~~~-~~~l~~L~~L~Ls~N~l~~~~~~~---------------------~~~~~~l~~L~  364 (549)
T 2z81_A          307 SLLEKVKRITVENSKVFLVPCSF-SQHLKSLEFLDLSENLMVEEYLKN---------------------SACKGAWPSLQ  364 (549)
T ss_dssp             HHSTTCCEEEEESSCCCCCCHHH-HHHCTTCCEEECCSSCCCHHHHHH---------------------HTCTTSSTTCC
T ss_pred             hhcccceEEEeccCccccCCHHH-HhcCccccEEEccCCccccccccc---------------------hhhhhccccCc
Confidence                          122222110 011445555555554432222210                     01134567777


Q ss_pred             eEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHh
Q 036689          389 ELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQ  468 (595)
Q Consensus       389 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  468 (595)
                      +|++++|....+.........+++|+.|++++          +.+..++. .+..+++|+.|+++++ .++.++. .+  
T Consensus       365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~----------N~l~~lp~-~~~~~~~L~~L~Ls~N-~l~~l~~-~~--  429 (549)
T 2z81_A          365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISR----------NTFHPMPD-SCQWPEKMRFLNLSST-GIRVVKT-CI--  429 (549)
T ss_dssp             EEECTTSCCCCHHHHHHHGGGCTTCCEEECTT----------CCCCCCCS-CCCCCTTCCEEECTTS-CCSCCCT-TS--
T ss_pred             EEEccCCcccccccchhhhhcCCCCCEEECCC----------CCCccCCh-hhcccccccEEECCCC-Ccccccc-hh--
Confidence            78877776543211001133567777777743          45555544 5666788888888884 4665532 11  


Q ss_pred             hcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCC-
Q 036689          469 SLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTT-  547 (595)
Q Consensus       469 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~-  547 (595)
                       .++|++|++++|. +++++   .        .+++|+.|+++++ .++.+|...   .+++|++|++++| +++.+|. 
T Consensus       430 -~~~L~~L~Ls~N~-l~~~~---~--------~l~~L~~L~Ls~N-~l~~ip~~~---~l~~L~~L~Ls~N-~l~~~~~~  491 (549)
T 2z81_A          430 -PQTLEVLDVSNNN-LDSFS---L--------FLPRLQELYISRN-KLKTLPDAS---LFPVLLVMKISRN-QLKSVPDG  491 (549)
T ss_dssp             -CTTCSEEECCSSC-CSCCC---C--------CCTTCCEEECCSS-CCSSCCCGG---GCTTCCEEECCSS-CCCCCCTT
T ss_pred             -cCCceEEECCCCC-hhhhc---c--------cCChhcEEECCCC-ccCcCCCcc---cCccCCEEecCCC-ccCCcCHH
Confidence             2578888888885 55543   1        3899999999996 788888642   4899999999997 6777765 


Q ss_pred             CCCCCCCcceEEeccCCCcccc
Q 036689          548 GELSTPPRVDVMYRNRGAPCWD  569 (595)
Q Consensus       548 ~~~~~~~L~~l~i~~~~~~~~~  569 (595)
                      .+.++++|+++++++|. |.++
T Consensus       492 ~~~~l~~L~~L~l~~N~-~~~~  512 (549)
T 2z81_A          492 IFDRLTSLQKIWLHTNP-WDCS  512 (549)
T ss_dssp             GGGGCTTCCEEECCSSC-BCCC
T ss_pred             HHhcCcccCEEEecCCC-ccCC
Confidence            47789999999998754 4333

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=1.5e-25  Score=250.84  Aligned_cols=434  Identities=15%  Similarity=0.091  Sum_probs=271.6

Q ss_pred             cccc-c-cccccEEEeccCCCCccccccccccccCCCcEEEc-ccCCCceEecCCC--CC--------------------
Q 036689           16 KKLQ-G-IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHV-QNNPDFMCIVDSK--ER--------------------   70 (595)
Q Consensus        16 ~~~~-~-l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L-~~~~~l~~i~~~~--~~--------------------   70 (595)
                      .|+. . -.++..|+|.+++..+.+++.+  +.+++|++|+| +++ .+....+-.  ..                    
T Consensus       315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l--~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~  391 (876)
T 4ecn_A          315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAI--GQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF  391 (876)
T ss_dssp             TTEEECTTSCEEEEECTTTCCEEEECGGG--GGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHH
T ss_pred             CceEecCCCCEEEEECccCCCCCcCchHH--hccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhh
Confidence            4554 1 2579999999998877777777  89999999999 554 332110000  00                    


Q ss_pred             ------------------------CCcCCcCCCccEEeccC-ccCccccccccccccCCCCccEEEecCCCCccc-----
Q 036689           71 ------------------------VPLDDAFPILESLNLYN-LIKLERICQDRLSVQSFNELKTIRVELCDQLSN-----  120 (595)
Q Consensus        71 ------------------------~~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----  120 (595)
                                              .........++.+.+.. .++++.+   |..++.+++|++|+|+++ .++.     
T Consensus       392 l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~I---P~~l~~L~~L~~L~Ls~N-~Lsg~~i~~  467 (876)
T 4ecn_A          392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI---SKAIQRLTKLQIIYFANS-PFTYDNIAV  467 (876)
T ss_dssp             TCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE---CGGGGGCTTCCEEEEESC-CCCGGGBSS
T ss_pred             hccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccch---hHHHhcCCCCCEEECcCC-cCCCCcccc
Confidence                                    00001112233333332 1234444   344788888899999885 5666     


Q ss_pred             -------------ccchhhhh--cCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc--ccc
Q 036689          121 -------------IFLLSAAK--CLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS--FCC  183 (595)
Q Consensus       121 -------------~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~  183 (595)
                                   +|  ..++  ++++|++|++++|.....+|.          .+..+++|+.|+++++..+..  ++.
T Consensus       468 ~~~~~s~n~~~g~iP--~~l~f~~L~~L~~L~Ls~N~l~~~iP~----------~l~~L~~L~~L~Ls~N~~lsg~~iP~  535 (876)
T 4ecn_A          468 DWEDANSDYAKQYEN--EELSWSNLKDLTDVELYNCPNMTQLPD----------FLYDLPELQSLNIACNRGISAAQLKA  535 (876)
T ss_dssp             SCSCTTSHHHHHHTT--SCCCGGGCTTCCEEEEESCTTCCSCCG----------GGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred             cccccccccccccCC--hhhhhccCCCCCEEECcCCCCCccChH----------HHhCCCCCCEEECcCCCCcccccchH
Confidence                         44  4444  888899999888776666652          345678888888888764442  332


Q ss_pred             ccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCc--cccccCCCccEEEEec
Q 036689          184 EVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPV--AMFLCFQNLTRLILRK  261 (595)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~--~~~~~l~~L~~L~L~~  261 (595)
                      ....                           +......+++|+.|++++|.++.+     |.  .+ ..+++|+.|++++
T Consensus       536 ~i~~---------------------------L~~~~~~l~~L~~L~Ls~N~L~~i-----p~~~~l-~~L~~L~~L~Ls~  582 (876)
T 4ecn_A          536 DWTR---------------------------LADDEDTGPKIQIFYMGYNNLEEF-----PASASL-QKMVKLGLLDCVH  582 (876)
T ss_dssp             HHHH---------------------------HHHCTTTTTTCCEEECCSSCCCBC-----CCHHHH-TTCTTCCEEECTT
T ss_pred             HHHh---------------------------hhhcccccCCccEEEeeCCcCCcc-----CChhhh-hcCCCCCEEECCC
Confidence            1100                           000112466888888888877755     66  44 6788888888887


Q ss_pred             CCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCc-ccEEeecCCCCcccccCCCccccCcccc
Q 036689          262 CPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQ-VTILRLVGLPELKCLYPGMHTSEWPALK  340 (595)
Q Consensus       262 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~~l~~~~~~~~~~~~~~L~  340 (595)
                      + .++.++   .++.+++|++|++++|. ++.++. ...        .+++ |+.|+++++. +..++........++|+
T Consensus       583 N-~l~~lp---~~~~L~~L~~L~Ls~N~-l~~lp~-~l~--------~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~  647 (876)
T 4ecn_A          583 N-KVRHLE---AFGTNVKLTDLKLDYNQ-IEEIPE-DFC--------AFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMG  647 (876)
T ss_dssp             S-CCCBCC---CCCTTSEESEEECCSSC-CSCCCT-TSC--------EECTTCCEEECCSSC-CCSCCSCCCTTCSSCEE
T ss_pred             C-Ccccch---hhcCCCcceEEECcCCc-cccchH-HHh--------hccccCCEEECcCCC-CCcCchhhhccccCCCC
Confidence            5 455544   35788888888888887 665543 222        2677 8888888865 55555433332235588


Q ss_pred             eeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCc--cCCCcceEeccCCCCeeccCCCCCcccccCceeEEe
Q 036689          341 LLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK--VFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQL  418 (595)
Q Consensus       341 ~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L  418 (595)
                      .|++++|.....+|.. +                    ....  .+++|++|++++|....+...  ....+++|+.|++
T Consensus       648 ~L~Ls~N~l~g~ip~l-~--------------------~~l~~~~~~~L~~L~Ls~N~L~~lp~~--~~~~l~~L~~L~L  704 (876)
T 4ecn_A          648 SVDFSYNKIGSEGRNI-S--------------------CSMDDYKGINASTVTLSYNEIQKFPTE--LFATGSPISTIIL  704 (876)
T ss_dssp             EEECCSSCTTTTSSSC-S--------------------SCTTTCCCCCEEEEECCSSCCCSCCHH--HHHTTCCCSEEEC
T ss_pred             EEECcCCcCCCccccc-h--------------------hhhccccCCCcCEEEccCCcCCccCHH--HHccCCCCCEEEC
Confidence            8888887644333320 0                    0011  345788888888875532110  0124577888888


Q ss_pred             eccccccccccCccccccCCCCcc-------ccCCccEEeEeCCCCCcccccchHH-hhcccccEEEEcCcccccchhcc
Q 036689          419 KFDASAAVVSSCDNLLILLPSSSV-------SFRNLKILEVSGCKKLTNLVASSAA-QSLVALVKMQVFGCRAMTQVVKS  490 (595)
Q Consensus       419 ~~~~~~l~~~~~~~l~~~~~~~~~-------~l~~L~~L~l~~c~~l~~~~~~~~~-~~l~~L~~L~l~~c~~l~~i~~~  490 (595)
                      ++          +.+..++...+.       .+++|+.|++++| .++.++ ..+. ..+++|+.|++++|. ++.++..
T Consensus       705 s~----------N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp-~~l~~~~l~~L~~L~Ls~N~-L~~lp~~  771 (876)
T 4ecn_A          705 SN----------NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLS-DDFRATTLPYLSNMDVSYNC-FSSFPTQ  771 (876)
T ss_dssp             CS----------CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCC-GGGSTTTCTTCCEEECCSSC-CSSCCCG
T ss_pred             CC----------CcCCccChHHhccccccccccCCccEEECCCC-CCccch-HHhhhccCCCcCEEEeCCCC-CCccchh
Confidence            43          455555543332       2348999999985 666653 3332 378899999998886 6666554


Q ss_pred             cCccccccccccccccceeccc------cccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCC
Q 036689          491 EGNQLAREEIVFNKLKMLSLLD------LDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRG  564 (595)
Q Consensus       491 ~~~~~~~~~~~l~~L~~L~l~~------~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~  564 (595)
                      ...        +++|+.|++++      +.-...+|...  ..+++|+.|++++|. ++.+|..+.  ++|+.|++++|.
T Consensus       772 l~~--------L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~  838 (876)
T 4ecn_A          772 PLN--------SSQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNP  838 (876)
T ss_dssp             GGG--------CTTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCT
T ss_pred             hhc--------CCCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCC
Confidence            443        88899998876      33344555554  348899999999884 588888754  689999998776


Q ss_pred             C
Q 036689          565 A  565 (595)
Q Consensus       565 ~  565 (595)
                      .
T Consensus       839 l  839 (876)
T 4ecn_A          839 N  839 (876)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=2.2e-26  Score=249.44  Aligned_cols=425  Identities=16%  Similarity=0.126  Sum_probs=251.1

Q ss_pred             ccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCC
Q 036689           36 KNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELC  115 (595)
Q Consensus        36 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c  115 (595)
                      ..++..+    .++|++|++++| .++.+.+.     .+..+++|++|+++++ .+..+..  ..+..+++|++|++++|
T Consensus        18 ~~ip~~~----~~~L~~L~Ls~n-~l~~~~~~-----~~~~l~~L~~L~Ls~n-~i~~~~~--~~~~~l~~L~~L~Ls~n   84 (549)
T 2z81_A           18 TSIPSGL----TAAMKSLDLSFN-KITYIGHG-----DLRACANLQVLILKSS-RINTIEG--DAFYSLGSLEHLDLSDN   84 (549)
T ss_dssp             SSCCSCC----CTTCCEEECCSS-CCCEECSS-----TTSSCTTCCEEECTTS-CCCEECT--TTTTTCTTCCEEECTTS
T ss_pred             ccccccC----CCCccEEECcCC-ccCccChh-----hhhcCCcccEEECCCC-CcCccCh--hhccccccCCEEECCCC
Confidence            4555433    489999999999 68887554     5678999999999996 7776632  34788999999999995


Q ss_pred             CCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcccccccccccccccccc
Q 036689          116 DQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMH  195 (595)
Q Consensus       116 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~  195 (595)
                       .+++.++ ..++++++|++|++++|. +..+..        ......+++|++|+++++..+..++..           
T Consensus        85 -~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~--------~~~~~~l~~L~~L~L~~n~~~~~~~~~-----------  142 (549)
T 2z81_A           85 -HLSSLSS-SWFGPLSSLKYLNLMGNP-YQTLGV--------TSLFPNLTNLQTLRIGNVETFSEIRRI-----------  142 (549)
T ss_dssp             -CCCSCCH-HHHTTCTTCCEEECTTCC-CSSSCS--------SCSCTTCTTCCEEEEEESSSCCEECTT-----------
T ss_pred             -ccCccCH-HHhccCCCCcEEECCCCc-ccccch--------hhhhhccCCccEEECCCCccccccCHh-----------
Confidence             6777764 568899999999999964 332211        023446889999999987755544321           


Q ss_pred             ccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhh
Q 036689          196 ETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLG  275 (595)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~  275 (595)
                                            ....+++|++|++++|.++...    |..+ ..+++|++|+++++. ...+ +...++
T Consensus       143 ----------------------~~~~l~~L~~L~L~~n~l~~~~----~~~l-~~l~~L~~L~l~~n~-~~~~-~~~~~~  193 (549)
T 2z81_A          143 ----------------------DFAGLTSLNELEIKALSLRNYQ----SQSL-KSIRDIHHLTLHLSE-SAFL-LEIFAD  193 (549)
T ss_dssp             ----------------------TTTTCCEEEEEEEEETTCCEEC----TTTT-TTCSEEEEEEEECSB-STTH-HHHHHH
T ss_pred             ----------------------hhhcccccCeeeccCCcccccC----hhhh-hccccCceEecccCc-cccc-chhhHh
Confidence                                  1124788899999988776542    3333 567888888888653 3333 333456


Q ss_pred             ccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccc-----cCC--------------------
Q 036689          276 SFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCL-----YPG--------------------  330 (595)
Q Consensus       276 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-----~~~--------------------  330 (595)
                      .+++|++|+++++. ++..+.....     ....+++|+.|++.++. +...     ...                    
T Consensus       194 ~l~~L~~L~L~~n~-l~~~~~~~~~-----~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~  266 (549)
T 2z81_A          194 ILSSVRYLELRDTN-LARFQFSPLP-----VDEVSSPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGL  266 (549)
T ss_dssp             STTTBSEEEEESCB-CTTCCCCCCS-----SCCCCCCCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred             hcccccEEEccCCc-cccccccccc-----hhhhhhcccceeccccc-cchhHHHHHHHHhhhhcccccccccccccccc
Confidence            68888888888887 6554211000     00114566666665542 1110     000                    


Q ss_pred             --------CccccCcccceeeecCCCCcccccc--ccc-----cccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCC
Q 036689          331 --------MHTSEWPALKLLDVSACDQVTVFDS--ELF-----SFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGK  395 (595)
Q Consensus       331 --------~~~~~~~~L~~L~l~~c~~l~~l~~--~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~  395 (595)
                              .....+++|+.|.+.++..-. ...  .+.     ..+..............+. .+.+.+++|++|++++|
T Consensus       267 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~-~~~~~l~~L~~L~Ls~N  344 (549)
T 2z81_A          267 GDFNPSESDVVSELGKVETVTIRRLHIPQ-FYLFYDLSTVYSLLEKVKRITVENSKVFLVPC-SFSQHLKSLEFLDLSEN  344 (549)
T ss_dssp             SCCCCCTTTCCCCCTTCCEEEEESCBCSC-GGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH-HHHHHCTTCCEEECCSS
T ss_pred             ccccccchhhhhhhcccccccccccccch-hhhcccchhhhhhcccceEEEeccCccccCCH-HHHhcCccccEEEccCC
Confidence                    001113334444443331100 000  000     0000000000000000000 11134677777777777


Q ss_pred             CCeeccC-CCCCcccccCceeEEeeccccccccccCccccccCC--CCccccCCccEEeEeCCCCCcccccchHHhhccc
Q 036689          396 DIRMIWH-GDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLP--SSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVA  472 (595)
Q Consensus       396 ~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  472 (595)
                      ...+... .......+++|+.|++++          +.+..+++  ..+..+++|+.|++++| .++.++.  .++.+++
T Consensus       345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~----------N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~--~~~~~~~  411 (549)
T 2z81_A          345 LMVEEYLKNSACKGAWPSLQTLVLSQ----------NHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPD--SCQWPEK  411 (549)
T ss_dssp             CCCHHHHHHHTCTTSSTTCCEEECTT----------SCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCS--CCCCCTT
T ss_pred             ccccccccchhhhhccccCcEEEccC----------CcccccccchhhhhcCCCCCEEECCCC-CCccCCh--hhccccc
Confidence            6554211 011123556777777743          33433321  13455677777777774 5555532  2355677


Q ss_pred             ccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCCCCC
Q 036689          473 LVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELST  552 (595)
Q Consensus       473 L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~  552 (595)
                      |++|++++|. ++.++..          .+++|+.|+++++ .+++++     ..+++|++|++++| +++.+|.. ..+
T Consensus       412 L~~L~Ls~N~-l~~l~~~----------~~~~L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N-~l~~ip~~-~~l  472 (549)
T 2z81_A          412 MRFLNLSSTG-IRVVKTC----------IPQTLEVLDVSNN-NLDSFS-----LFLPRLQELYISRN-KLKTLPDA-SLF  472 (549)
T ss_dssp             CCEEECTTSC-CSCCCTT----------SCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSSCCCG-GGC
T ss_pred             ccEEECCCCC-cccccch----------hcCCceEEECCCC-Chhhhc-----ccCChhcEEECCCC-ccCcCCCc-ccC
Confidence            7777777775 5544321          1457888888886 566554     24899999999997 78889874 458


Q ss_pred             CCcceEEeccCCC
Q 036689          553 PPRVDVMYRNRGA  565 (595)
Q Consensus       553 ~~L~~l~i~~~~~  565 (595)
                      ++|+++++++|.-
T Consensus       473 ~~L~~L~Ls~N~l  485 (549)
T 2z81_A          473 PVLLVMKISRNQL  485 (549)
T ss_dssp             TTCCEEECCSSCC
T ss_pred             ccCCEEecCCCcc
Confidence            9999999998755

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=241.52  Aligned_cols=462  Identities=14%  Similarity=0.074  Sum_probs=293.2

Q ss_pred             ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689            2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE   81 (595)
Q Consensus         2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~   81 (595)
                      |.|++..|.++--|..+.  ++|++|+++++......+..+  .++++|++|++++| .++.+.+.     .+..+++|+
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~-----~~~~l~~L~   72 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDI--LSLSKLRILIISHN-RIQYLDIS-----VFKFNQELE   72 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHH--TTCTTCCEEECCSS-CCCEEEGG-----GGTTCTTCC
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhc--cccccccEEecCCC-ccCCcChH-----HhhcccCCC
Confidence            677888776432244343  899999999998743322334  78999999999999 78877554     567899999


Q ss_pred             EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689           82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK  161 (595)
Q Consensus        82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  161 (595)
                      +|+++++ +++.++..     .+++|++|++++| .++.++.+..++++++|++|++++|.. ..            ...
T Consensus        73 ~L~Ls~N-~l~~lp~~-----~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l-~~------------~~~  132 (520)
T 2z7x_B           73 YLDLSHN-KLVKISCH-----PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHL-EK------------SSV  132 (520)
T ss_dssp             EEECCSS-CCCEEECC-----CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSC-CG------------GGG
T ss_pred             EEecCCC-ceeecCcc-----ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCccc-ch------------hhc
Confidence            9999996 77766322     7899999999996 566544337788999999999999653 22            122


Q ss_pred             cccccc--ceEecCCCCC--ccccccccccc--cccccccccccCccccccccccCCCccccccccCCccceeeccccc-
Q 036689          162 IEFGQL--STLCLGSLPE--LTSFCCEVKKN--RQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVN-  234 (595)
Q Consensus       162 ~~~~~L--~~L~l~~~~~--l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-  234 (595)
                      ..+++|  +.|+++++.-  ....+......  ....+....+.          ......-.....+++|+.|++++|. 
T Consensus       133 ~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~----------~~~~~~~~~~~~l~~L~~L~l~~n~~  202 (520)
T 2z7x_B          133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK----------EFHFILDVSVKTVANLELSNIKCVLE  202 (520)
T ss_dssp             GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS----------CCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred             cccccceeeEEEeecccccccccccccccccccceEEEEeccCc----------chhhhhhhhhhcccceeecccccccc
Confidence            335666  8888887653  11111111000  00000000000          0000000112246778888888763 


Q ss_pred             ------ceeecccCCCccccccCCCccEEEEecCCCCccccchhhh--hccCCCcEEEeecccccc-eecccccCCCCCC
Q 036689          235 ------IEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASML--GSFEHLQHLEIRYCKGLQ-EIISKEGADDQVP  305 (595)
Q Consensus       235 ------l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~--~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~  305 (595)
                            +...    +| .+ ..+++|+.|+++++. +.........  ...++|++|++++|. ++ .++. ....   .
T Consensus       203 ~~~~~~~~~~----~~-~l-~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~-~~~~---~  270 (520)
T 2z7x_B          203 DNKCSYFLSI----LA-KL-QTNPKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVK-LQGQLDF-RDFD---Y  270 (520)
T ss_dssp             TTTTHHHHHH----HH-GG-GGCTTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEE-EESCCCC-CCCC---C
T ss_pred             ccccceeecc----hh-hh-ccccchhhccccccc-cCHHHHHHHHHHhhhCcccEEEeeccc-ccCcccc-chhh---c
Confidence                  2211    12 22 567888888888753 3221111111  124589999999887 55 4443 2210   0


Q ss_pred             CCcCCCcccEEeecCCCCcccccCCCccc--cCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCcc
Q 036689          306 PNFVFPQVTILRLVGLPELKCLYPGMHTS--EWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKV  383 (595)
Q Consensus       306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~--~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  383 (595)
                      ....+++|+.+++.++..  .++......  .-++|+.|+++++... ..+.                         ...
T Consensus       271 ~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~-------------------------~~~  322 (520)
T 2z7x_B          271 SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC-------------------------PSK  322 (520)
T ss_dssp             CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC-------------------------CSS
T ss_pred             ccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc-cccc-------------------------hhh
Confidence            002378888888887543  333111000  0156889999887532 2221                         257


Q ss_pred             CCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccC--CCCccccCCccEEeEeCCCCCcc-
Q 036689          384 FPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILL--PSSSVSFRNLKILEVSGCKKLTN-  460 (595)
Q Consensus       384 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~--~~~~~~l~~L~~L~l~~c~~l~~-  460 (595)
                      +++|++|++++|...+..+.  ....+++|+.|++++          +.+..++  +..+..+++|+.|+++++ .++. 
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~----------N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~  389 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFE--NCGHLTELETLILQM----------NQLKELSKIAEMTTQMKSLQQLDISQN-SVSYD  389 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTT--TCCCCSSCCEEECCS----------SCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCC
T ss_pred             CCcccEEEeECCccChhhhh--hhccCCCCCEEEccC----------CccCccccchHHHhhCCCCCEEECCCC-cCCcc
Confidence            89999999999986653332  235678999999954          4454321  124667899999999984 5665 


Q ss_pred             cccchHHhhcccccEEEEcCcccccchhcccCcccccccccc-ccccceeccccccccccccCcccccCCCccEEEEeCC
Q 036689          461 LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVF-NKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGC  539 (595)
Q Consensus       461 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C  539 (595)
                      + +...+..+++|++|++++|. ++.....          .+ ++|+.|+++++ .++.+|.+..  .+++|++|++++|
T Consensus       390 l-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----------~l~~~L~~L~Ls~N-~l~~ip~~~~--~l~~L~~L~L~~N  454 (520)
T 2z7x_B          390 E-KKGDCSWTKSLLSLNMSSNI-LTDTIFR----------CLPPRIKVLDLHSN-KIKSIPKQVV--KLEALQELNVASN  454 (520)
T ss_dssp             G-GGCSCCCCTTCCEEECCSSC-CCGGGGG----------SCCTTCCEEECCSS-CCCCCCGGGG--GCTTCCEEECCSS
T ss_pred             c-ccchhccCccCCEEECcCCC-CCcchhh----------hhcccCCEEECCCC-cccccchhhh--cCCCCCEEECCCC
Confidence            5 33345678999999999987 4332211          13 69999999996 7888887764  5999999999998


Q ss_pred             CCccccCCC-CCCCCCcceEEeccCCCccccCchH
Q 036689          540 PKMNIFTTG-ELSTPPRVDVMYRNRGAPCWDGDLN  573 (595)
Q Consensus       540 ~~l~~lp~~-~~~~~~L~~l~i~~~~~~~~~~~~~  573 (595)
                       +++.+|.. +.++++|+++++++|. |.++..+.
T Consensus       455 -~l~~l~~~~~~~l~~L~~L~l~~N~-~~c~c~~~  487 (520)
T 2z7x_B          455 -QLKSVPDGIFDRLTSLQKIWLHTNP-WDCSCPRI  487 (520)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECCSSC-BCCCHHHH
T ss_pred             -cCCccCHHHhccCCcccEEECcCCC-CcccCCch
Confidence             78899987 7789999999998653 55554433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=2.4e-24  Score=244.54  Aligned_cols=472  Identities=16%  Similarity=0.093  Sum_probs=301.9

Q ss_pred             ceeccccccc--ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCC
Q 036689            2 RTLKLKFNSV--SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPI   79 (595)
Q Consensus         2 ~~l~l~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~   79 (595)
                      |.|+|..|..  .+.+++|+.+++|++|+|+++......+..+  +++++|++|+|++| .++...+..   ..+..+++
T Consensus        51 ~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~n-~l~~~~~~~---~~~~~L~~  124 (844)
T 3j0a_A           51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF--QGLFHLFELRLYFC-GLSDAVLKD---GYFRNLKA  124 (844)
T ss_dssp             SEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS--CSCSSCCCEECTTC-CCSSCCSTT---CCCSSCSS
T ss_pred             eEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc--cCCcccCEeeCcCC-CCCcccccC---ccccccCC
Confidence            5678877632  4557888899999999999998754334444  89999999999999 565321111   13678999


Q ss_pred             ccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcC--CCCcEEEEcccCCcceeecccCccccc
Q 036689           80 LESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCL--PRLERIAVINCRNIQEIFVVDGEYDAI  157 (595)
Q Consensus        80 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l--~~L~~L~l~~c~~l~~~~~~~~~~~~~  157 (595)
                      |++|+++++ .+..... +..++.+++|++|+++++ .++...+ ..+..+  ++|++|++++|......+......   
T Consensus       125 L~~L~Ls~N-~l~~~~~-~~~~~~L~~L~~L~Ls~N-~i~~~~~-~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~---  197 (844)
T 3j0a_A          125 LTRLDLSKN-QIRSLYL-HPSFGKLNSLKSIDFSSN-QIFLVCE-HELEPLQGKTLSFFSLAANSLYSRVSVDWGKC---  197 (844)
T ss_dssp             CCEEEEESC-CCCCCCC-CGGGGTCSSCCEEEEESS-CCCCCCS-GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSS---
T ss_pred             CCEEECCCC-ccccccc-chhHhhCCCCCEEECCCC-cCCeeCH-HHcccccCCccceEECCCCccccccccchhhc---
Confidence            999999996 6655421 123789999999999995 5665543 455555  899999999976544333211000   


Q ss_pred             ccccccccccceEecCCCCCcccccccc----ccccccccc-------------------cccccCcc-ccc-----ccc
Q 036689          158 DHQKIEFGQLSTLCLGSLPELTSFCCEV----KKNRQAQGM-------------------HETCSNKI-SSL-----EDK  208 (595)
Q Consensus       158 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~~~~~-------------------~~~~~~~~-~~~-----~~~  208 (595)
                       ...+....|+.|+++++.--...+...    ....+..+.                   .....+.. +.+     .++
T Consensus       198 -~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n  276 (844)
T 3j0a_A          198 -MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG  276 (844)
T ss_dssp             -SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC
T ss_pred             -CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC
Confidence             001122348888888763211111100    000000000                   00000000 011     111


Q ss_pred             --ccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEee
Q 036689          209 --LDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIR  286 (595)
Q Consensus       209 --~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~  286 (595)
                        .....   .....+++|+.|++++|.++.+....+     ..+++|++|+++++ .++.+.+. .+..+++|++|+++
T Consensus       277 ~l~~~~~---~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~  346 (844)
T 3j0a_A          277 FVFSLNS---RVFETLKDLKVLNLAYNKINKIADEAF-----YGLDNLQVLNLSYN-LLGELYSS-NFYGLPKVAYIDLQ  346 (844)
T ss_dssp             CCCEECS---CCSSSCCCCCEEEEESCCCCEECTTTT-----TTCSSCCEEEEESC-CCSCCCSC-SCSSCTTCCEEECC
T ss_pred             cccccCh---hhhhcCCCCCEEECCCCcCCCCChHHh-----cCCCCCCEEECCCC-CCCccCHH-HhcCCCCCCEEECC
Confidence              11111   113468899999999998887733222     57899999999986 56665443 46889999999999


Q ss_pred             cccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCC
Q 036689          287 YCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEE  366 (595)
Q Consensus       287 ~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~  366 (595)
                      +|. +..++...+..        +++|+.|+++++. +..++.      +++|+.|.++++. ++.+|....  ......
T Consensus       347 ~N~-i~~~~~~~~~~--------l~~L~~L~Ls~N~-l~~i~~------~~~L~~L~l~~N~-l~~l~~~~~--~l~~L~  407 (844)
T 3j0a_A          347 KNH-IAIIQDQTFKF--------LEKLQTLDLRDNA-LTTIHF------IPSIPDIFLSGNK-LVTLPKINL--TANLIH  407 (844)
T ss_dssp             SCC-CCCCCSSCSCS--------CCCCCEEEEETCC-SCCCSS------CCSCSEEEEESCC-CCCCCCCCT--TCCEEE
T ss_pred             CCC-CCccChhhhcC--------CCCCCEEECCCCC-CCcccC------CCCcchhccCCCC-ccccccccc--ccceee
Confidence            997 87776543332        8999999999954 554433      7899999999875 445554211  111111


Q ss_pred             CCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCcccc-----ccCCCCc
Q 036689          367 DKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLL-----ILLPSSS  441 (595)
Q Consensus       367 ~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~-----~~~~~~~  441 (595)
                      .........+....+..+++|++|++++|+....... ......++|+.|++++          +.+.     ...+..+
T Consensus       408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~L~~L~Ls~----------N~l~~~~~~~~~~~~~  476 (844)
T 3j0a_A          408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD-QTPSENPSLEQLFLGE----------NMLQLAWETELCWDVF  476 (844)
T ss_dssp             CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS-SSSCSCTTCCBCEEES----------CCCSSSCCSCCCSSCS
T ss_pred             cccCccccCchhhhhhcCCccceeeCCCCcccccccc-cccccCCccccccCCC----------Cccccccccccchhhh
Confidence            1111222222222234789999999999986653322 2233478999999964          3343     2233356


Q ss_pred             cccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccccccccc
Q 036689          442 VSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCS  521 (595)
Q Consensus       442 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  521 (595)
                      ..+++|+.|++++ +.++.+++ ..+..+++|++|+++++. ++.++....         .++|+.|+++++ .++.++.
T Consensus       477 ~~l~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~~---------~~~L~~L~Ls~N-~l~~~~~  543 (844)
T 3j0a_A          477 EGLSHLQVLYLNH-NYLNSLPP-GVFSHLTALRGLSLNSNR-LTVLSHNDL---------PANLEILDISRN-QLLAPNP  543 (844)
T ss_dssp             SCBCCEECCCCCH-HHHTTCCT-TSSSSCCSCSEEEEESCC-CSSCCCCCC---------CSCCCEEEEEEE-CCCCCCS
T ss_pred             cCcccccEEECCC-CcccccCh-hHccchhhhheeECCCCC-CCccChhhh---------hccccEEECCCC-cCCCCCh
Confidence            6789999999999 46777644 445789999999999986 777755432         378999999995 6777765


Q ss_pred             CcccccCCCccEEEEeCCCCccc
Q 036689          522 GNYIFKFPSLEVLFVVGCPKMNI  544 (595)
Q Consensus       522 ~~~~~~~~~L~~L~l~~C~~l~~  544 (595)
                      ..    +++|+.|+++++|-...
T Consensus       544 ~~----~~~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          544 DV----FVSLSVLDITHNKFICE  562 (844)
T ss_dssp             CC----CSSCCEEEEEEECCCCS
T ss_pred             hH----hCCcCEEEecCCCcccc
Confidence            54    67999999998765543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=7.8e-24  Score=233.32  Aligned_cols=497  Identities=15%  Similarity=0.120  Sum_probs=258.4

Q ss_pred             ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689            2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL   80 (595)
Q Consensus         2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L   80 (595)
                      +.|+|++|.+ .+.+..|+.+++|++|+|++|.. ..+++.. .+++++|++|+|++| .++.+++.     .+..+++|
T Consensus        55 ~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i-~~i~~~~-f~~L~~L~~L~Ls~N-~l~~l~~~-----~f~~L~~L  126 (635)
T 4g8a_A           55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGA-YQSLSHLSTLILTGN-PIQSLALG-----AFSGLSSL  126 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC-CEECTTT-TTTCTTCCEEECTTC-CCCEECGG-----GGTTCTTC
T ss_pred             CEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC-CCcChhH-hcCCCCCCEEEccCC-cCCCCCHH-----HhcCCCCC
Confidence            5677777765 34466677788888888888765 3343321 267888888888887 67777543     45677888


Q ss_pred             cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccc-----
Q 036689           81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYD-----  155 (595)
Q Consensus        81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~-----  155 (595)
                      ++|+++++ +++.+...  .++.+++|++|+++++ .++....+..++.+++|++|++++| .+..++...-...     
T Consensus       127 ~~L~Ls~N-~l~~l~~~--~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~  201 (635)
T 4g8a_A          127 QKLVAVET-NLASLENF--PIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL  201 (635)
T ss_dssp             CEEECTTS-CCCCSTTC--CCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTT
T ss_pred             CEEECCCC-cCCCCChh--hhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhh
Confidence            88888885 66665322  3677888888888884 5655443366777888888888874 4444432110000     


Q ss_pred             -------------ccccccccccccceEecCCCCC-ccccccc---cccccccccccccccCccccccccccCCCccccc
Q 036689          156 -------------AIDHQKIEFGQLSTLCLGSLPE-LTSFCCE---VKKNRQAQGMHETCSNKISSLEDKLDISSPLFNE  218 (595)
Q Consensus       156 -------------~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (595)
                                   .+.........++.+.+.+... +......   ........+......+.    .......   ...
T Consensus       202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~----~~l~~~~---~~~  274 (635)
T 4g8a_A          202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE----GNLEKFD---KSA  274 (635)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTS----CCCSCCC---TTT
T ss_pred             hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccc----ccccccc---ccc
Confidence                         0000111111222222221100 0000000   00000000000000000    0000000   000


Q ss_pred             cccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccc
Q 036689          219 KVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKE  298 (595)
Q Consensus       219 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  298 (595)
                      ......+....+..+........ .+..+ ..+.+++.+.+.+.. +..+..   +.....|+.|++.++. +..++...
T Consensus       275 ~~~~~~l~~~~l~~~~~~~~~~~-~~~~~-~~~~~l~~l~~~~~~-~~~~~~---~~~~~~L~~L~l~~~~-~~~~~~~~  347 (635)
T 4g8a_A          275 LEGLCNLTIEEFRLAYLDYYLDG-IIDLF-NCLTNVSSFSLVSVT-IERVKD---FSYNFGWQHLELVNCK-FGQFPTLK  347 (635)
T ss_dssp             TGGGGGSEEEEEEEECCCSCEEE-CTTTT-GGGTTCSEEEEESCE-EEECGG---GGSCCCCSEEEEESCE-ESSCCCCB
T ss_pred             cccccchhhhhhhhhhhcccccc-hhhhh-hhhcccccccccccc-cccccc---cccchhhhhhhccccc-ccCcCccc
Confidence            01112222222221100000000 01110 234455555555432 222111   2334455555555554 33222100


Q ss_pred             cCC-----------CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCC
Q 036689          299 GAD-----------DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEED  367 (595)
Q Consensus       299 ~~~-----------~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~  367 (595)
                      ...           ........+++|+.++++++................+|+.+++..+.... .+             
T Consensus       348 l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~-------------  413 (635)
T 4g8a_A          348 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MS-------------  413 (635)
T ss_dssp             CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-EC-------------
T ss_pred             chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cc-------------
Confidence            000           00000111455555555543211110000011123445555544433221 11             


Q ss_pred             CCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCc
Q 036689          368 KPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNL  447 (595)
Q Consensus       368 ~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L  447 (595)
                                 ..+..+++|+.+++.++........ .....+++++.+++          ..+.+....+..+..+++|
T Consensus       414 -----------~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~l~~l~~l~l----------s~n~l~~~~~~~~~~~~~L  471 (635)
T 4g8a_A          414 -----------SNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDI----------SHTHTRVAFNGIFNGLSSL  471 (635)
T ss_dssp             -----------SCCTTCTTCCEEECTTSEEESTTSS-CTTTTCTTCCEEEC----------TTSCCEECCTTTTTTCTTC
T ss_pred             -----------ccccccccccchhhhhccccccccc-cccccccccccccc----------cccccccccccccccchhh
Confidence                       1135678888888887766553322 22345667788887          4456777767677788999


Q ss_pred             cEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCccccc
Q 036689          448 KILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFK  527 (595)
Q Consensus       448 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~  527 (595)
                      +.|+++++.......+ ..++.+++|++|++++|. +++++.....       .+++|+.|+++++ .++.++...+. .
T Consensus       472 ~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~-------~l~~L~~L~Ls~N-~l~~l~~~~~~-~  540 (635)
T 4g8a_A          472 EVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPTAFN-------SLSSLQVLNMSHN-NFFSLDTFPYK-C  540 (635)
T ss_dssp             CEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECTTS-CCCBCCCGGGT-T
T ss_pred             hhhhhhhcccccccCc-hhhhhccccCEEECCCCc-cCCcChHHHc-------CCCCCCEEECCCC-cCCCCChhHHh-C
Confidence            9999999765555433 456789999999999996 7777654433       4899999999995 78888765432 5


Q ss_pred             CCCccEEEEeCCCCcccc-CCCCCCC-CCcceEEeccCCCccccCchHH
Q 036689          528 FPSLEVLFVVGCPKMNIF-TTGELST-PPRVDVMYRNRGAPCWDGDLNT  574 (595)
Q Consensus       528 ~~~L~~L~l~~C~~l~~l-p~~~~~~-~~L~~l~i~~~~~~~~~~~~~~  574 (595)
                      +++|++|+++++ +++.+ |..+.++ ++|++|++++|. |.|+.++..
T Consensus       541 l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np-~~C~C~~~~  587 (635)
T 4g8a_A          541 LNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND-FACTCEHQS  587 (635)
T ss_dssp             CTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC-BCCSGGGHH
T ss_pred             CCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC-CcccCCcHH
Confidence            899999999997 56665 5556666 689999998543 777776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=5.6e-25  Score=241.70  Aligned_cols=365  Identities=14%  Similarity=0.100  Sum_probs=245.8

Q ss_pred             CceEecCCCCCCCcCCcCCCccEEeccCccCccc------------------ccccccccc--CCCCccEEEecCCCCcc
Q 036689           60 DFMCIVDSKERVPLDDAFPILESLNLYNLIKLER------------------ICQDRLSVQ--SFNELKTIRVELCDQLS  119 (595)
Q Consensus        60 ~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~~--~l~~L~~L~L~~c~~l~  119 (595)
                      .++.+ +.     .+..+++|++|+++++ .++.                  +   +..++  .+++|++|++++|....
T Consensus       194 ~l~~i-p~-----~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~i---p~~l~~~~l~~L~~L~L~~n~l~~  263 (636)
T 4eco_A          194 NITFV-SK-----AVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYK---TEDLKWDNLKDLTDVEVYNCPNLT  263 (636)
T ss_dssp             EEEEE-CG-----GGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHT---TSCCCGGGCTTCCEEEEECCTTCS
T ss_pred             CCccC-CH-----HHhcccCCCEEECcCC-ccccccccccccccccchhcccC---chhhhhcccCCCCEEEecCCcCCc
Confidence            56665 33     4667899999999996 5766                  4   44466  89999999999975555


Q ss_pred             cccchhhhhcCCCCcEEEEcccCCcc--eeecccCcccccccccccccccceEecCCCCCcccccccccccccccccccc
Q 036689          120 NIFLLSAAKCLPRLERIAVINCRNIQ--EIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHET  197 (595)
Q Consensus       120 ~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~  197 (595)
                      .+|  ..+.++++|++|++++|..+.  .+|...+..    .....+++|+.|+++++.- ..++.              
T Consensus       264 ~~p--~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L----~~~~~l~~L~~L~L~~n~l-~~ip~--------------  322 (636)
T 4eco_A          264 KLP--TFLKALPEMQLINVACNRGISGEQLKDDWQAL----ADAPVGEKIQIIYIGYNNL-KTFPV--------------  322 (636)
T ss_dssp             SCC--TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH----HHSGGGGTCCEEECCSSCC-SSCCC--------------
T ss_pred             cCh--HHHhcCCCCCEEECcCCCCCccccchHHHHhh----hccccCCCCCEEECCCCcC-CccCc--------------
Confidence            444  678889999999999976343  344221000    0111248899999887642 23321              


Q ss_pred             ccCccccccccccCCCccccccccCCccceeecccccce-eecccCCCccccccCCCccEEEEecCCCCccccchhhhhc
Q 036689          198 CSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIE-KIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGS  276 (595)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~  276 (595)
                                        ......+++|+.|++++|.++ .+     | .+ ..+++|+.|+++++ .++.++.  .+..
T Consensus       323 ------------------~~~l~~l~~L~~L~L~~N~l~g~i-----p-~~-~~l~~L~~L~L~~N-~l~~lp~--~l~~  374 (636)
T 4eco_A          323 ------------------ETSLQKMKKLGMLECLYNQLEGKL-----P-AF-GSEIKLASLNLAYN-QITEIPA--NFCG  374 (636)
T ss_dssp             ------------------HHHHTTCTTCCEEECCSCCCEEEC-----C-CC-EEEEEESEEECCSS-EEEECCT--TSEE
T ss_pred             ------------------hhhhccCCCCCEEeCcCCcCccch-----h-hh-CCCCCCCEEECCCC-ccccccH--hhhh
Confidence                              001235789999999999887 55     5 33 57899999999976 5665433  3688


Q ss_pred             cCC-CcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCC-----ccccCcccceeeecCCCCc
Q 036689          277 FEH-LQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGM-----HTSEWPALKLLDVSACDQV  350 (595)
Q Consensus       277 l~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~-----~~~~~~~L~~L~l~~c~~l  350 (595)
                      +++ |++|++++|. ++.++. ...      ...+++|+.|+++++.-....+...     ....+++|+.|+++++. +
T Consensus       375 l~~~L~~L~Ls~N~-l~~lp~-~~~------~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l  445 (636)
T 4eco_A          375 FTEQVENLSFAHNK-LKYIPN-IFD------AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-I  445 (636)
T ss_dssp             ECTTCCEEECCSSC-CSSCCS-CCC------TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-C
T ss_pred             hcccCcEEEccCCc-Ccccch-hhh------hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-c
Confidence            888 9999999998 776654 211      1125689999999965433322211     11136789999998874 4


Q ss_pred             cccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCC-----cccccCceeEEeecccccc
Q 036689          351 TVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFP-----QHLFGGLKVLQLKFDASAA  425 (595)
Q Consensus       351 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~~l  425 (595)
                      +.+|.                       ..+..+++|++|++++|....+....+.     ...+++|+.|+++      
T Consensus       446 ~~lp~-----------------------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls------  496 (636)
T 4eco_A          446 SKFPK-----------------------ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR------  496 (636)
T ss_dssp             CSCCT-----------------------HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECC------
T ss_pred             CcCCH-----------------------HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECc------
Confidence            46665                       3335689999999999986643322111     1122389999994      


Q ss_pred             ccccCccccccCCCCcc--ccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcc------cccchhcccCccccc
Q 036689          426 VVSSCDNLLILLPSSSV--SFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCR------AMTQVVKSEGNQLAR  497 (595)
Q Consensus       426 ~~~~~~~l~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~------~l~~i~~~~~~~~~~  497 (595)
                          .+.+..++. .+.  .+++|+.|++++ +.++.+ +.. +..+++|++|+++++.      -...++....     
T Consensus       497 ----~N~l~~lp~-~~~~~~l~~L~~L~Ls~-N~l~~i-p~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~-----  563 (636)
T 4eco_A          497 ----FNKLTKLSD-DFRATTLPYLVGIDLSY-NSFSKF-PTQ-PLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-----  563 (636)
T ss_dssp             ----SSCCCBCCG-GGSTTTCTTCCEEECCS-SCCSSC-CCG-GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG-----
T ss_pred             ----CCcCCccCh-hhhhccCCCcCEEECCC-CCCCCc-Chh-hhcCCCCCEEECCCCcccccCcccccChHHHh-----
Confidence                355665554 554  789999999999 567765 333 4689999999996543      2333333333     


Q ss_pred             cccccccccceeccccccccccccCcccccCCCccEEEEeCCCCc
Q 036689          498 EEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKM  542 (595)
Q Consensus       498 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l  542 (595)
                         .+++|+.|+++++ .++.+|...    +++|+.|++++|+-.
T Consensus       564 ---~l~~L~~L~Ls~N-~l~~ip~~~----~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          564 ---LCPSLTQLQIGSN-DIRKVNEKI----TPNISVLDIKDNPNI  600 (636)
T ss_dssp             ---GCSSCCEEECCSS-CCCBCCSCC----CTTCCEEECCSCTTC
T ss_pred             ---cCCCCCEEECCCC-cCCccCHhH----hCcCCEEECcCCCCc
Confidence               4899999999996 568888765    589999999998643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=3.6e-25  Score=247.83  Aligned_cols=366  Identities=13%  Similarity=0.061  Sum_probs=250.2

Q ss_pred             CceEecCCCCCCCcCCcCCCccEEeccCccCccc------------------ccccccccc--CCCCccEEEecCCCCcc
Q 036689           60 DFMCIVDSKERVPLDDAFPILESLNLYNLIKLER------------------ICQDRLSVQ--SFNELKTIRVELCDQLS  119 (595)
Q Consensus        60 ~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~~--~l~~L~~L~L~~c~~l~  119 (595)
                      .++.++ .     .+..+++|++|+++++ .+..                  +   |..++  .+++|++|++++|....
T Consensus       436 ~L~~IP-~-----~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~i---P~~l~f~~L~~L~~L~Ls~N~l~~  505 (876)
T 4ecn_A          436 RITFIS-K-----AIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYE---NEELSWSNLKDLTDVELYNCPNMT  505 (876)
T ss_dssp             EEEEEC-G-----GGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHT---TSCCCGGGCTTCCEEEEESCTTCC
T ss_pred             cccchh-H-----HHhcCCCCCEEECcCC-cCCCCcccccccccccccccccC---ChhhhhccCCCCCEEECcCCCCCc
Confidence            566553 3     4678899999999996 6766                  3   34456  89999999999976555


Q ss_pred             cccchhhhhcCCCCcEEEEcccCCcc--eeecccCcccccccccccccccceEecCCCCCcccccccccccccccccccc
Q 036689          120 NIFLLSAAKCLPRLERIAVINCRNIQ--EIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHET  197 (595)
Q Consensus       120 ~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~  197 (595)
                      .+|  ..+.++++|++|++++|..+.  .+|...+...   .....+++|+.|+++++.-- .++.              
T Consensus       506 ~iP--~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~---~~~~~l~~L~~L~Ls~N~L~-~ip~--------------  565 (876)
T 4ecn_A          506 QLP--DFLYDLPELQSLNIACNRGISAAQLKADWTRLA---DDEDTGPKIQIFYMGYNNLE-EFPA--------------  565 (876)
T ss_dssp             SCC--GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH---HCTTTTTTCCEEECCSSCCC-BCCC--------------
T ss_pred             cCh--HHHhCCCCCCEEECcCCCCcccccchHHHHhhh---hcccccCCccEEEeeCCcCC-ccCC--------------
Confidence            555  778899999999999976344  3443211000   01223568999999876422 3331              


Q ss_pred             ccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhcc
Q 036689          198 CSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSF  277 (595)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l  277 (595)
                                        ......+++|+.|++++|.++.+     | .+ ..+++|+.|+++++ .++.++.  .+..+
T Consensus       566 ------------------~~~l~~L~~L~~L~Ls~N~l~~l-----p-~~-~~L~~L~~L~Ls~N-~l~~lp~--~l~~l  617 (876)
T 4ecn_A          566 ------------------SASLQKMVKLGLLDCVHNKVRHL-----E-AF-GTNVKLTDLKLDYN-QIEEIPE--DFCAF  617 (876)
T ss_dssp             ------------------HHHHTTCTTCCEEECTTSCCCBC-----C-CC-CTTSEESEEECCSS-CCSCCCT--TSCEE
T ss_pred             ------------------hhhhhcCCCCCEEECCCCCcccc-----h-hh-cCCCcceEEECcCC-ccccchH--HHhhc
Confidence                              00123588999999999988755     5 33 67899999999986 4555433  36888


Q ss_pred             CC-CcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccccc---CCCccccCcccceeeecCCCCcccc
Q 036689          278 EH-LQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLY---PGMHTSEWPALKLLDVSACDQVTVF  353 (595)
Q Consensus       278 ~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~---~~~~~~~~~~L~~L~l~~c~~l~~l  353 (595)
                      ++ |++|++++|. ++.++. ...      ....++|+.|+++++.-...++   .......+++|+.|++++|. ++.+
T Consensus       618 ~~~L~~L~Ls~N~-L~~lp~-~~~------~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~l  688 (876)
T 4ecn_A          618 TDQVEGLGFSHNK-LKYIPN-IFN------AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKF  688 (876)
T ss_dssp             CTTCCEEECCSSC-CCSCCS-CCC------TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSC
T ss_pred             cccCCEEECcCCC-CCcCch-hhh------ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCcc
Confidence            98 9999999998 776653 111      1124569999999975433222   12222235689999999875 4466


Q ss_pred             ccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCC-----cccccCceeEEeeccccccccc
Q 036689          354 DSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFP-----QHLFGGLKVLQLKFDASAAVVS  428 (595)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~~l~~~  428 (595)
                      |.                       .....+++|+.|++++|....+....+.     ...+++|+.|++++        
T Consensus       689 p~-----------------------~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~--------  737 (876)
T 4ecn_A          689 PT-----------------------ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF--------  737 (876)
T ss_dssp             CH-----------------------HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS--------
T ss_pred             CH-----------------------HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC--------
Confidence            66                       3335689999999999976643332221     12344899999943        


Q ss_pred             cCccccccCCCCcc--ccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcc------cccchhcccCcccccccc
Q 036689          429 SCDNLLILLPSSSV--SFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCR------AMTQVVKSEGNQLAREEI  500 (595)
Q Consensus       429 ~~~~l~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~------~l~~i~~~~~~~~~~~~~  500 (595)
                        +.+..++. .+.  .+++|+.|++++ +.++.+ +.. +..+++|+.|++++|+      ....++....        
T Consensus       738 --N~L~~lp~-~l~~~~l~~L~~L~Ls~-N~L~~l-p~~-l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~--------  803 (876)
T 4ecn_A          738 --NKLTSLSD-DFRATTLPYLSNMDVSY-NCFSSF-PTQ-PLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT--------  803 (876)
T ss_dssp             --SCCCCCCG-GGSTTTCTTCCEEECCS-SCCSSC-CCG-GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG--------
T ss_pred             --CCCccchH-HhhhccCCCcCEEEeCC-CCCCcc-chh-hhcCCCCCEEECCCCCCcccccccccChHHHh--------
Confidence              45665554 554  789999999998 567775 333 4689999999998743      2233333222        


Q ss_pred             ccccccceeccccccccccccCcccccCCCccEEEEeCCCCc
Q 036689          501 VFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKM  542 (595)
Q Consensus       501 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l  542 (595)
                      .+++|+.|++++| .++.+|...    +++|+.|++++|+-.
T Consensus       804 ~L~~L~~L~Ls~N-~L~~Ip~~l----~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          804 TCPSLIQLQIGSN-DIRKVDEKL----TPQLYILDIADNPNI  840 (876)
T ss_dssp             GCSSCCEEECCSS-CCCBCCSCC----CSSSCEEECCSCTTC
T ss_pred             cCCCCCEEECCCC-CCCccCHhh----cCCCCEEECCCCCCC
Confidence            4899999999997 568898775    579999999998643

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=6.3e-25  Score=236.25  Aligned_cols=430  Identities=12%  Similarity=0.083  Sum_probs=262.0

Q ss_pred             ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689            2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL   80 (595)
Q Consensus         2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L   80 (595)
                      +.|+|+.|.+ .+.++.|+.+++|++|+++++......+..+  +++++|++|+|++| .++.++..        .+++|
T Consensus        24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~lp~~--------~l~~L   92 (520)
T 2z7x_B           24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF--KFNQELEYLDLSHN-KLVKISCH--------PTVNL   92 (520)
T ss_dssp             SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG--TTCTTCCEEECCSS-CCCEEECC--------CCCCC
T ss_pred             cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh--hcccCCCEEecCCC-ceeecCcc--------ccCCc
Confidence            5788888875 3446778899999999999998743333344  89999999999999 78877422        68999


Q ss_pred             cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCC--cEEEEcccCC--cceeecccCccc-
Q 036689           81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRL--ERIAVINCRN--IQEIFVVDGEYD-  155 (595)
Q Consensus        81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L--~~L~l~~c~~--l~~~~~~~~~~~-  155 (595)
                      ++|+++++ .+..+. .+..++.+++|++|+++++ .++.    ..+..+++|  ++|++++|..  ....+....... 
T Consensus        93 ~~L~L~~N-~l~~~~-~p~~~~~l~~L~~L~L~~n-~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~  165 (520)
T 2z7x_B           93 KHLDLSFN-AFDALP-ICKEFGNMSQLKFLGLSTT-HLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT  165 (520)
T ss_dssp             SEEECCSS-CCSSCC-CCGGGGGCTTCCEEEEEES-SCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred             cEEeccCC-cccccc-chhhhccCCcceEEEecCc-ccch----hhccccccceeeEEEeeccccccccccccccccccc
Confidence            99999996 666531 1334789999999999995 5654    345677888  9999999765  222221111000 


Q ss_pred             ---------------ccccccccccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccc
Q 036689          156 ---------------AIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKV  220 (595)
Q Consensus       156 ---------------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (595)
                                     ........+++|+.|+++++.....+..                 .           ........
T Consensus       166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----------------~-----------~~~~~~l~  217 (520)
T 2z7x_B          166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY-----------------F-----------LSILAKLQ  217 (520)
T ss_dssp             EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH-----------------H-----------HHHHHGGG
T ss_pred             ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce-----------------e-----------ecchhhhc
Confidence                           0000111244444444443321000000                 0           00011223


Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhh----hccCCCcEEEeecccccceecc
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASML----GSFEHLQHLEIRYCKGLQEIIS  296 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~----~~l~~L~~L~l~~c~~l~~~~~  296 (595)
                      .+++|+.|+++++.+.......++.+.  ..++|++|++++|. ++...+..++    ++++.|+.++++++. + .++.
T Consensus       218 ~l~~L~~L~l~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-~-~~p~  292 (520)
T 2z7x_B          218 TNPKLSNLTLNNIETTWNSFIRILQLV--WHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDV-F-GFPQ  292 (520)
T ss_dssp             GCTTCCEEEEEEEEEEHHHHHHHHHHH--HTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECC-C-CSCT
T ss_pred             cccchhhccccccccCHHHHHHHHHHh--hhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccc-e-ecch
Confidence            567788888877765532221122221  24578888888763 3321222111    567777778877776 4 3332


Q ss_pred             cccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCC
Q 036689          297 KEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQP  376 (595)
Q Consensus       297 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  376 (595)
                      .....     ...-++|+.|+++++. +.....   ...+++|++|+++++......|.                     
T Consensus       293 ~~~~~-----~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~---------------------  342 (520)
T 2z7x_B          293 SYIYE-----IFSNMNIKNFTVSGTR-MVHMLC---PSKISPFLHLDFSNNLLTDTVFE---------------------  342 (520)
T ss_dssp             HHHHH-----HHHTCCCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSSCCCTTTTT---------------------
T ss_pred             hhhhc-----ccccCceeEEEcCCCc-cccccc---hhhCCcccEEEeECCccChhhhh---------------------
Confidence            11100     0001457888888765 332221   12367888888887754333333                     


Q ss_pred             CCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccc-cCCCCccccCCccEEeEeCC
Q 036689          377 LFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLI-LLPSSSVSFRNLKILEVSGC  455 (595)
Q Consensus       377 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~-~~~~~~~~l~~L~~L~l~~c  455 (595)
                         .++.+++|++|++++|...++.........+++|+.|+++          .+.+.. ++...+..+++|+.|++++|
T Consensus       343 ---~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls----------~N~l~~~l~~~~~~~l~~L~~L~Ls~N  409 (520)
T 2z7x_B          343 ---NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS----------QNSVSYDEKKGDCSWTKSLLSLNMSSN  409 (520)
T ss_dssp             ---TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC----------SSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred             ---hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC----------CCcCCcccccchhccCccCCEEECcCC
Confidence               1356788888888888755421100112356778888884          344555 54444667889999999985


Q ss_pred             CCCcccccchHHhhc-ccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEE
Q 036689          456 KKLTNLVASSAAQSL-VALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVL  534 (595)
Q Consensus       456 ~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L  534 (595)
                       .++...+    ..+ ++|++|++++|. ++.++.....        +++|+.|+++++ .++.+|.... ..+++|++|
T Consensus       410 -~l~~~~~----~~l~~~L~~L~Ls~N~-l~~ip~~~~~--------l~~L~~L~L~~N-~l~~l~~~~~-~~l~~L~~L  473 (520)
T 2z7x_B          410 -ILTDTIF----RCLPPRIKVLDLHSNK-IKSIPKQVVK--------LEALQELNVASN-QLKSVPDGIF-DRLTSLQKI  473 (520)
T ss_dssp             -CCCGGGG----GSCCTTCCEEECCSSC-CCCCCGGGGG--------CTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEE
T ss_pred             -CCCcchh----hhhcccCCEEECCCCc-ccccchhhhc--------CCCCCEEECCCC-cCCccCHHHh-ccCCcccEE
Confidence             4543322    223 689999999986 7777655444        889999999996 7888887632 358899999


Q ss_pred             EEeCCCC
Q 036689          535 FVVGCPK  541 (595)
Q Consensus       535 ~l~~C~~  541 (595)
                      ++++++-
T Consensus       474 ~l~~N~~  480 (520)
T 2z7x_B          474 WLHTNPW  480 (520)
T ss_dssp             ECCSSCB
T ss_pred             ECcCCCC
Confidence            9998763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=2.1e-23  Score=226.47  Aligned_cols=467  Identities=12%  Similarity=0.038  Sum_probs=272.5

Q ss_pred             ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689            2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE   81 (595)
Q Consensus         2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~   81 (595)
                      +.+++..+.++-.|.+  ..+++++|+++++......+..+  +.+++|++|+|++| .++.+.+.     .+..+++|+
T Consensus        34 ~~l~ls~~~L~~ip~~--~~~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~-----~~~~l~~L~  103 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKD--LPPRTKALSLSQNSISELRMPDI--SFLSELRVLRLSHN-RIRSLDFH-----VFLFNQDLE  103 (562)
T ss_dssp             CEEECTTSCCCSCCTT--SCTTCCEEECCSSCCCCCCGGGT--TTCTTCCEEECCSC-CCCEECTT-----TTTTCTTCC
T ss_pred             cEEEcCCCCCccCCCC--CCCCcCEEECCCCCccccChhhh--ccCCCccEEECCCC-CCCcCCHH-----HhCCCCCCC
Confidence            3455555543211332  34789999999888743322234  78999999999988 78877544     567788999


Q ss_pred             EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689           82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK  161 (595)
Q Consensus        82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  161 (595)
                      +|+++++ .++.++..     .+++|++|++++| .++.++.+..++++++|++|+++++. +...            ..
T Consensus       104 ~L~Ls~N-~l~~lp~~-----~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~------------~~  163 (562)
T 3a79_B          104 YLDVSHN-RLQNISCC-----PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQL------------DL  163 (562)
T ss_dssp             EEECTTS-CCCEECSC-----CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCTT------------TT
T ss_pred             EEECCCC-cCCccCcc-----ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCc-cccC------------ch
Confidence            9999986 67766321     6889999999995 67766544678889999999998843 3221            12


Q ss_pred             cccccc--ceEecCCCCC--ccccccccccccccccccccccCccccccccccCCCccccccccCCccceeeccccc--c
Q 036689          162 IEFGQL--STLCLGSLPE--LTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVN--I  235 (595)
Q Consensus       162 ~~~~~L--~~L~l~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l  235 (595)
                      ..+++|  +.|+++++.-  -...+..........+......+.        -...........+++|+.++++++.  .
T Consensus       164 ~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~--------~~~~~~~~~~~~l~~L~~L~l~~n~~~~  235 (562)
T 3a79_B          164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS--------LFSVQVNMSVNALGHLQLSNIKLNDENC  235 (562)
T ss_dssp             GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS--------CCCCCCEEEESSEEEEEEEEEECCSTTH
T ss_pred             hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc--------chhhhhhhcccccceEEEeccccccccc
Confidence            223444  8888776543  111111000000000000000000        0000000011235566666666652  1


Q ss_pred             eeecccCCCccccccCCCccEEEEecCCCCccccchh--hhhccCCCcEEEeecccccc-eecccccCCCCCCCCcCCCc
Q 036689          236 EKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSAS--MLGSFEHLQHLEIRYCKGLQ-EIISKEGADDQVPPNFVFPQ  312 (595)
Q Consensus       236 ~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~--~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~l~~  312 (595)
                      ..+ ... ...+ ..+++|+.+++.++. +.......  .....++|++|++++|. ++ .++...+..       ..++
T Consensus       236 ~~l-~~~-~~~l-~~l~~L~~L~L~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ip~~~~~~-------~~~~  303 (562)
T 3a79_B          236 QRL-MTF-LSEL-TRGPTLLNVTLQHIE-TTWKCSVKLFQFFWPRPVEYLNIYNLT-ITERIDREEFTY-------SETA  303 (562)
T ss_dssp             HHH-HHH-HHHH-HSCSSCEEEEEEEEE-ECHHHHHHHHHHHTTSSEEEEEEEEEE-ECSCCCCCCCCC-------CSCS
T ss_pred             chH-HHH-HHHH-hccCcceEEEecCCc-CcHHHHHHHHHhhhcccccEEEEeccE-eeccccchhhhc-------cccc
Confidence            111 000 1111 345666777666542 21110000  01123478888888877 54 444321110       0144


Q ss_pred             ccEEeecCCCCcc-cccCCCc--cccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcce
Q 036689          313 VTILRLVGLPELK-CLYPGMH--TSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEE  389 (595)
Q Consensus       313 L~~L~L~~~~~l~-~~~~~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~  389 (595)
                      |+.|.+.++.... .++....  ....++|+.|+++++.... ++                         ..+.+++|++
T Consensus       304 L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~-~~-------------------------~~~~l~~L~~  357 (562)
T 3a79_B          304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH-MV-------------------------CPPSPSSFTF  357 (562)
T ss_dssp             CCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC-CC-------------------------CCSSCCCCCE
T ss_pred             chheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc-cc-------------------------CccCCCCceE
Confidence            4444444322111 1110000  0012458888888875321 11                         1257899999


Q ss_pred             EeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccC--CCCccccCCccEEeEeCCCCCcccccchHH
Q 036689          390 LGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILL--PSSSVSFRNLKILEVSGCKKLTNLVASSAA  467 (595)
Q Consensus       390 L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  467 (595)
                      |++++|...+..+.  ....+++|+.|++++          +.+..++  +..+..+++|+.|+++++ .++...+...+
T Consensus       358 L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~----------N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~  424 (562)
T 3a79_B          358 LNFTQNVFTDSVFQ--GCSTLKRLQTLILQR----------NGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTC  424 (562)
T ss_dssp             EECCSSCCCTTTTT--TCCSCSSCCEEECCS----------SCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCC
T ss_pred             EECCCCccccchhh--hhcccCCCCEEECCC----------CCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhh
Confidence            99999986653332  235678999999953          4555433  225667899999999994 56652244455


Q ss_pred             hhcccccEEEEcCcccccchhcccCcccccccccc-ccccceeccccccccccccCcccccCCCccEEEEeCCCCccccC
Q 036689          468 QSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVF-NKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFT  546 (595)
Q Consensus       468 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp  546 (595)
                      ..+++|++|++++|. ++.....          .+ ++|+.|+++++ .++.+|.+..  .+++|++|+++++ +++.+|
T Consensus       425 ~~l~~L~~L~l~~n~-l~~~~~~----------~l~~~L~~L~L~~N-~l~~ip~~~~--~l~~L~~L~L~~N-~l~~l~  489 (562)
T 3a79_B          425 AWAESILVLNLSSNM-LTGSVFR----------CLPPKVKVLDLHNN-RIMSIPKDVT--HLQALQELNVASN-QLKSVP  489 (562)
T ss_dssp             CCCTTCCEEECCSSC-CCGGGGS----------SCCTTCSEEECCSS-CCCCCCTTTT--SSCCCSEEECCSS-CCCCCC
T ss_pred             cCcccCCEEECCCCC-CCcchhh----------hhcCcCCEEECCCC-cCcccChhhc--CCCCCCEEECCCC-CCCCCC
Confidence            778999999999987 4332211          24 69999999996 8889998774  5999999999997 688999


Q ss_pred             CC-CCCCCCcceEEeccCCCccccCchH
Q 036689          547 TG-ELSTPPRVDVMYRNRGAPCWDGDLN  573 (595)
Q Consensus       547 ~~-~~~~~~L~~l~i~~~~~~~~~~~~~  573 (595)
                      .. +..+++|+++++++|. |.++..+.
T Consensus       490 ~~~~~~l~~L~~L~l~~N~-~~c~c~~~  516 (562)
T 3a79_B          490 DGVFDRLTSLQYIWLHDNP-WDCTCPGI  516 (562)
T ss_dssp             TTSTTTCTTCCCEECCSCC-BCCCHHHH
T ss_pred             HHHHhcCCCCCEEEecCCC-cCCCcchH
Confidence            87 7889999999998653 55554433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=1.1e-22  Score=215.43  Aligned_cols=238  Identities=17%  Similarity=0.214  Sum_probs=166.7

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  300 (595)
                      .+++|+.|++.+ .+..+     +. + ..+++|+.|+++++. ++.+.   .+..+++|++|++++|. ++.+++..  
T Consensus       154 ~l~~L~~L~l~~-~~~~~-----~~-~-~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~~--  218 (466)
T 1o6v_A          154 GLTSLQQLSFGN-QVTDL-----KP-L-ANLTTLERLDISSNK-VSDIS---VLAKLTNLESLIATNNQ-ISDITPLG--  218 (466)
T ss_dssp             TCTTCSEEEEEE-SCCCC-----GG-G-TTCTTCCEEECCSSC-CCCCG---GGGGCTTCSEEECCSSC-CCCCGGGG--
T ss_pred             cCCcccEeecCC-cccCc-----hh-h-ccCCCCCEEECcCCc-CCCCh---hhccCCCCCEEEecCCc-cccccccc--
Confidence            467788888753 33222     22 2 578999999999874 55543   35889999999999997 76664411  


Q ss_pred             CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689          301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP  380 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  380 (595)
                              .+++|+.|+++++. +..++.   ...+++|+.|++++|. ++.++.                         
T Consensus       219 --------~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~l~~n~-l~~~~~-------------------------  260 (466)
T 1o6v_A          219 --------ILTNLDELSLNGNQ-LKDIGT---LASLTNLTDLDLANNQ-ISNLAP-------------------------  260 (466)
T ss_dssp             --------GCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEECCSSC-CCCCGG-------------------------
T ss_pred             --------ccCCCCEEECCCCC-cccchh---hhcCCCCCEEECCCCc-cccchh-------------------------
Confidence                    28999999999964 444321   2237899999999875 333333                         


Q ss_pred             CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689          381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN  460 (595)
Q Consensus       381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~  460 (595)
                      +..+++|++|++++|....+.+    ...+++|+.|++.+          +.+..+++  +..+++|+.|++++| .++.
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~----------n~l~~~~~--~~~l~~L~~L~L~~n-~l~~  323 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNE----------NQLEDISP--ISNLKNLTYLTLYFN-NISD  323 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCS----------SCCSCCGG--GGGCTTCSEEECCSS-CCSC
T ss_pred             hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCC----------CcccCchh--hcCCCCCCEEECcCC-cCCC
Confidence            3678999999999997655322    44678899999954          34555443  567899999999985 5666


Q ss_pred             cccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCC
Q 036689          461 LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCP  540 (595)
Q Consensus       461 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~  540 (595)
                      ..+   +..+++|++|++++|. ++.++ ...        .+++|+.|++++|. +++++. .  ..+++|+.|++++|+
T Consensus       324 ~~~---~~~l~~L~~L~l~~n~-l~~~~-~l~--------~l~~L~~L~l~~n~-l~~~~~-~--~~l~~L~~L~l~~n~  386 (466)
T 1o6v_A          324 ISP---VSSLTKLQRLFFYNNK-VSDVS-SLA--------NLTNINWLSAGHNQ-ISDLTP-L--ANLTRITQLGLNDQA  386 (466)
T ss_dssp             CGG---GGGCTTCCEEECCSSC-CCCCG-GGT--------TCTTCCEEECCSSC-CCBCGG-G--TTCTTCCEEECCCEE
T ss_pred             chh---hccCccCCEeECCCCc-cCCch-hhc--------cCCCCCEEeCCCCc-cCccch-h--hcCCCCCEEeccCCc
Confidence            533   4688999999999986 66653 222        48899999999874 554443 2  358999999999873


Q ss_pred             CccccC
Q 036689          541 KMNIFT  546 (595)
Q Consensus       541 ~l~~lp  546 (595)
                       +..+|
T Consensus       387 -~~~~p  391 (466)
T 1o6v_A          387 -WTNAP  391 (466)
T ss_dssp             -EECCC
T ss_pred             -ccCCc
Confidence             44444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=1.9e-22  Score=213.57  Aligned_cols=349  Identities=20%  Similarity=0.250  Sum_probs=254.4

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+++++.|++.++.. ..+ +.+  ..+++|++|++++| .++.++       .+..+++|++|+++++ .+..+.    
T Consensus        44 ~l~~l~~L~l~~~~i-~~l-~~~--~~l~~L~~L~Ls~n-~l~~~~-------~~~~l~~L~~L~l~~n-~l~~~~----  106 (466)
T 1o6v_A           44 DLDQVTTLQADRLGI-KSI-DGV--EYLNNLTQINFSNN-QLTDIT-------PLKNLTKLVDILMNNN-QIADIT----  106 (466)
T ss_dssp             HHHTCCEEECCSSCC-CCC-TTG--GGCTTCCEEECCSS-CCCCCG-------GGTTCTTCCEEECCSS-CCCCCG----
T ss_pred             HhccccEEecCCCCC-ccC-cch--hhhcCCCEEECCCC-ccCCch-------hhhccccCCEEECCCC-ccccCh----
Confidence            578999999998876 343 334  78999999999998 566552       2567899999999996 666552    


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT  179 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  179 (595)
                      ++..+++|++|++++| .+++++   .+.++++|++|++++|. +..++           ....+++|+.|++++  .+.
T Consensus       107 ~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~-----------~~~~l~~L~~L~l~~--~~~  168 (466)
T 1o6v_A          107 PLANLTNLTGLTLFNN-QITDID---PLKNLTNLNRLELSSNT-ISDIS-----------ALSGLTSLQQLSFGN--QVT  168 (466)
T ss_dssp             GGTTCTTCCEEECCSS-CCCCCG---GGTTCTTCSEEEEEEEE-ECCCG-----------GGTTCTTCSEEEEEE--SCC
T ss_pred             hhcCCCCCCEEECCCC-CCCCCh---HHcCCCCCCEEECCCCc-cCCCh-----------hhccCCcccEeecCC--ccc
Confidence            2788999999999996 677764   27889999999999864 33332           244577888887753  111


Q ss_pred             ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689          180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL  259 (595)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L  259 (595)
                      ..                                   .....+++|+.|++++|.++.+     +. + ..+++|++|++
T Consensus       169 ~~-----------------------------------~~~~~l~~L~~L~l~~n~l~~~-----~~-l-~~l~~L~~L~l  206 (466)
T 1o6v_A          169 DL-----------------------------------KPLANLTTLERLDISSNKVSDI-----SV-L-AKLTNLESLIA  206 (466)
T ss_dssp             CC-----------------------------------GGGTTCTTCCEEECCSSCCCCC-----GG-G-GGCTTCSEEEC
T ss_pred             Cc-----------------------------------hhhccCCCCCEEECcCCcCCCC-----hh-h-ccCCCCCEEEe
Confidence            11                                   1123588999999999987765     32 2 57899999999


Q ss_pred             ecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCccc
Q 036689          260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPAL  339 (595)
Q Consensus       260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L  339 (595)
                      ++| .+....+   ++.+++|++|++++|. +++++.  .        ..+++|+.|+++++. +.....   ...+++|
T Consensus       207 ~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~--l--------~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L  267 (466)
T 1o6v_A          207 TNN-QISDITP---LGILTNLDELSLNGNQ-LKDIGT--L--------ASLTNLTDLDLANNQ-ISNLAP---LSGLTKL  267 (466)
T ss_dssp             CSS-CCCCCGG---GGGCTTCCEEECCSSC-CCCCGG--G--------GGCTTCSEEECCSSC-CCCCGG---GTTCTTC
T ss_pred             cCC-ccccccc---ccccCCCCEEECCCCC-cccchh--h--------hcCCCCCEEECCCCc-cccchh---hhcCCCC
Confidence            986 4555444   4789999999999997 776632  1        128999999999965 333322   2337999


Q ss_pred             ceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEee
Q 036689          340 KLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLK  419 (595)
Q Consensus       340 ~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~  419 (595)
                      +.|++++|. ++.++.                         +..+++|++|++++|...++.+    ...+++|+.|+++
T Consensus       268 ~~L~l~~n~-l~~~~~-------------------------~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~  317 (466)
T 1o6v_A          268 TELKLGANQ-ISNISP-------------------------LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLY  317 (466)
T ss_dssp             SEEECCSSC-CCCCGG-------------------------GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECC
T ss_pred             CEEECCCCc-cCcccc-------------------------ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECc
Confidence            999998874 333443                         4678999999999997655322    4578899999995


Q ss_pred             ccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccc
Q 036689          420 FDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREE  499 (595)
Q Consensus       420 ~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~  499 (595)
                      +          +.+....+  +..+++|+.|++++| .++.+   ..+..+++|++|++++|. +.+++. ..       
T Consensus       318 ~----------n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~~-~~-------  372 (466)
T 1o6v_A          318 F----------NNISDISP--VSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHNQ-ISDLTP-LA-------  372 (466)
T ss_dssp             S----------SCCSCCGG--GGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCBCGG-GT-------
T ss_pred             C----------CcCCCchh--hccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCCc-cCccch-hh-------
Confidence            3          44555543  567899999999996 66765   345789999999999997 555543 22       


Q ss_pred             cccccccceecccccccccccc
Q 036689          500 IVFNKLKMLSLLDLDSLTSFCS  521 (595)
Q Consensus       500 ~~l~~L~~L~l~~~~~l~~l~~  521 (595)
                       .+++|+.|+++++ .++.+|.
T Consensus       373 -~l~~L~~L~l~~n-~~~~~p~  392 (466)
T 1o6v_A          373 -NLTRITQLGLNDQ-AWTNAPV  392 (466)
T ss_dssp             -TCTTCCEEECCCE-EEECCCB
T ss_pred             -cCCCCCEEeccCC-cccCCch
Confidence             4899999999996 5666553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=1.1e-22  Score=220.71  Aligned_cols=428  Identities=13%  Similarity=0.089  Sum_probs=227.8

Q ss_pred             ceeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689            2 RTLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL   80 (595)
Q Consensus         2 ~~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L   80 (595)
                      +.|+|..|.+ .+.++.|+.+++|++|++++|......+..+  +++++|++|++++| .++.++..        .+++|
T Consensus        55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~lp~~--------~l~~L  123 (562)
T 3a79_B           55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF--LFNQDLEYLDVSHN-RLQNISCC--------PMASL  123 (562)
T ss_dssp             CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECTTS-CCCEECSC--------CCTTC
T ss_pred             CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh--CCCCCCCEEECCCC-cCCccCcc--------ccccC
Confidence            5788888876 3446788899999999999997743223334  78999999999999 78887422        68999


Q ss_pred             cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCC--cEEEEcccCC--cceeecccCccc-
Q 036689           81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRL--ERIAVINCRN--IQEIFVVDGEYD-  155 (595)
Q Consensus        81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L--~~L~l~~c~~--l~~~~~~~~~~~-  155 (595)
                      ++|+++++ .+..+.. +..++.+++|++|+++++ .++..    .+..+++|  ++|++++|..  ....+.....-. 
T Consensus       124 ~~L~Ls~N-~l~~l~~-p~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~  196 (562)
T 3a79_B          124 RHLDLSFN-DFDVLPV-CKEFGNLTKLTFLGLSAA-KFRQL----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT  196 (562)
T ss_dssp             SEEECCSS-CCSBCCC-CGGGGGCTTCCEEEEECS-BCCTT----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred             CEEECCCC-CccccCc-hHhhcccCcccEEecCCC-ccccC----chhhhhhceeeEEEeecccccccccCcccccccCc
Confidence            99999996 6766521 234788999999999994 56642    33455566  9999999654  111111000000 


Q ss_pred             ---------------ccccccccccccceEecCCCCC-ccccccccccccccccccccccCccccccccccCCCcccccc
Q 036689          156 ---------------AIDHQKIEFGQLSTLCLGSLPE-LTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEK  219 (595)
Q Consensus       156 ---------------~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (595)
                                     ........+++|+.+++++... ...+..                               .....
T Consensus       197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-------------------------------~~~~l  245 (562)
T 3a79_B          197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-------------------------------FLSEL  245 (562)
T ss_dssp             EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-------------------------------HHHHH
T ss_pred             ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-------------------------------HHHHH
Confidence                           0000111244555555544210 000000                               01111


Q ss_pred             ccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhh-hccCCCcEEEeecccc--cceecc
Q 036689          220 VALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASML-GSFEHLQHLEIRYCKG--LQEIIS  296 (595)
Q Consensus       220 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~-~~l~~L~~L~l~~c~~--l~~~~~  296 (595)
                      ..++.|+.|++.++.+........+...  ..++|++|++++|.--..++. ..+ ...++|+.|.+.++..  + .++.
T Consensus       246 ~~l~~L~~L~L~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~-~~~~~~~~~L~~L~~~~~~~~~~-~~p~  321 (562)
T 3a79_B          246 TRGPTLLNVTLQHIETTWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDR-EEFTYSETALKSLMIEHVKNQVF-LFSK  321 (562)
T ss_dssp             HSCSSCEEEEEEEEEECHHHHHHHHHHH--TTSSEEEEEEEEEEECSCCCC-CCCCCCSCSCCEEEEEEEEECCC-SSCH
T ss_pred             hccCcceEEEecCCcCcHHHHHHHHHhh--hcccccEEEEeccEeeccccc-hhhhcccccchheehhhccccee-ecCh
Confidence            2345555555555433221111112221  234666666665531112211 110 0012333333332220  1 1111


Q ss_pred             cccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCC
Q 036689          297 KEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQP  376 (595)
Q Consensus       297 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  376 (595)
                      .....     ....++|+.|+++++.- .....   ...+++|++|+++++.-....|.                     
T Consensus       322 ~~~~~-----~~~~~~L~~L~l~~n~~-~~~~~---~~~l~~L~~L~l~~n~l~~~~~~---------------------  371 (562)
T 3a79_B          322 EALYS-----VFAEMNIKMLSISDTPF-IHMVC---PPSPSSFTFLNFTQNVFTDSVFQ---------------------  371 (562)
T ss_dssp             HHHHH-----HHHTCCCSEEEEESSCC-CCCCC---CSSCCCCCEEECCSSCCCTTTTT---------------------
T ss_pred             hhhhh-----hhccCcceEEEccCCCc-ccccC---ccCCCCceEEECCCCccccchhh---------------------
Confidence            00000     00013466666666432 22111   01256666666666543222222                     


Q ss_pred             CCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccc-cCCCCccccCCccEEeEeCC
Q 036689          377 LFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLI-LLPSSSVSFRNLKILEVSGC  455 (595)
Q Consensus       377 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~-~~~~~~~~l~~L~~L~l~~c  455 (595)
                         .+..+++|++|++++|+...+.........+++|+.|+++          .+.+.. ++...+..+++|+.|+++++
T Consensus       372 ---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~----------~N~l~~~~~~~~~~~l~~L~~L~l~~n  438 (562)
T 3a79_B          372 ---GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS----------LNSLNSHAYDRTCAWAESILVLNLSSN  438 (562)
T ss_dssp             ---TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT----------TSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred             ---hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC----------CCcCCCccChhhhcCcccCCEEECCCC
Confidence               1345566666666666544321100112345566666663          234444 44444566778888888874


Q ss_pred             CCCcccccchHHhhc-ccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEE
Q 036689          456 KKLTNLVASSAAQSL-VALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVL  534 (595)
Q Consensus       456 ~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L  534 (595)
                       .++...+    ..+ ++|++|++++|. ++.++...+.        +++|+.|+++++ .++.+|.+.. ..+++|+.|
T Consensus       439 -~l~~~~~----~~l~~~L~~L~L~~N~-l~~ip~~~~~--------l~~L~~L~L~~N-~l~~l~~~~~-~~l~~L~~L  502 (562)
T 3a79_B          439 -MLTGSVF----RCLPPKVKVLDLHNNR-IMSIPKDVTH--------LQALQELNVASN-QLKSVPDGVF-DRLTSLQYI  502 (562)
T ss_dssp             -CCCGGGG----SSCCTTCSEEECCSSC-CCCCCTTTTS--------SCCCSEEECCSS-CCCCCCTTST-TTCTTCCCE
T ss_pred             -CCCcchh----hhhcCcCCEEECCCCc-CcccChhhcC--------CCCCCEEECCCC-CCCCCCHHHH-hcCCCCCEE
Confidence             4443212    233 578888888875 7777655444        788888888884 6777776622 247888888


Q ss_pred             EEeCCCC
Q 036689          535 FVVGCPK  541 (595)
Q Consensus       535 ~l~~C~~  541 (595)
                      ++++++-
T Consensus       503 ~l~~N~~  509 (562)
T 3a79_B          503 WLHDNPW  509 (562)
T ss_dssp             ECCSCCB
T ss_pred             EecCCCc
Confidence            8887753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=2.5e-22  Score=212.25  Aligned_cols=85  Identities=13%  Similarity=0.149  Sum_probs=43.7

Q ss_pred             CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhh
Q 036689           48 LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA  127 (595)
Q Consensus        48 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~  127 (595)
                      ++|++|+|+++ .++.+.+.     .+..+++|++|+++++.-...+.  +..+..+++|++|++++| .++..++ ..+
T Consensus        30 ~~l~~L~Ls~n-~i~~~~~~-----~~~~l~~L~~L~L~~n~~~~~i~--~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~   99 (455)
T 3v47_A           30 AHVNYVDLSLN-SIAELNET-----SFSRLQDLQFLKVEQQTPGLVIR--NNTFRGLSSLIILKLDYN-QFLQLET-GAF   99 (455)
T ss_dssp             TTCCEEECCSS-CCCEECTT-----TTSSCTTCCEEECCCCSTTCEEC--TTTTTTCTTCCEEECTTC-TTCEECT-TTT
T ss_pred             CccCEEEecCC-ccCcCChh-----HhccCccccEEECcCCcccceEC--cccccccccCCEEeCCCC-ccCccCh-hhc
Confidence            55666666665 45554332     34455666666666642111221  122455666666666664 3444332 445


Q ss_pred             hcCCCCcEEEEcccC
Q 036689          128 KCLPRLERIAVINCR  142 (595)
Q Consensus       128 ~~l~~L~~L~l~~c~  142 (595)
                      +++++|++|++++|.
T Consensus       100 ~~l~~L~~L~L~~n~  114 (455)
T 3v47_A          100 NGLANLEVLTLTQCN  114 (455)
T ss_dssp             TTCTTCCEEECTTSC
T ss_pred             cCcccCCEEeCCCCC
Confidence            566666666666643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=1.3e-22  Score=213.35  Aligned_cols=91  Identities=21%  Similarity=0.078  Sum_probs=46.5

Q ss_pred             CCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccc
Q 036689          385 PNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVAS  464 (595)
Q Consensus       385 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  464 (595)
                      ++|++|++++|...++..      ..++|+.|++++          +.+..++.    ..++|+.|++++ +.++.++. 
T Consensus       277 ~~L~~L~ls~N~l~~l~~------~~~~L~~L~l~~----------N~l~~i~~----~~~~L~~L~Ls~-N~l~~lp~-  334 (454)
T 1jl5_A          277 QSLTFLDVSENIFSGLSE------LPPNLYYLNASS----------NEIRSLCD----LPPSLEELNVSN-NKLIELPA-  334 (454)
T ss_dssp             TTCCEEECCSSCCSEESC------CCTTCCEEECCS----------SCCSEECC----CCTTCCEEECCS-SCCSCCCC-
T ss_pred             CcCCEEECcCCccCcccC------cCCcCCEEECcC----------CcCCcccC----CcCcCCEEECCC-Cccccccc-
Confidence            566666666665443211      114566666632          33333221    013666666666 34554421 


Q ss_pred             hHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccc
Q 036689          465 SAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDL  513 (595)
Q Consensus       465 ~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~  513 (595)
                          .+++|++|++++|. +++++.   .        +++|+.|+++++
T Consensus       335 ----~~~~L~~L~L~~N~-l~~lp~---~--------l~~L~~L~L~~N  367 (454)
T 1jl5_A          335 ----LPPRLERLIASFNH-LAEVPE---L--------PQNLKQLHVEYN  367 (454)
T ss_dssp             ----CCTTCCEEECCSSC-CSCCCC---C--------CTTCCEEECCSS
T ss_pred             ----cCCcCCEEECCCCc-cccccc---h--------hhhccEEECCCC
Confidence                14666666666664 554433   1        566666666664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.90  E-value=2.5e-22  Score=212.19  Aligned_cols=217  Identities=12%  Similarity=0.063  Sum_probs=138.8

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      ..++|++|+++++......+..+  +++++|++|++++|.-...+.+.     .+..+++|++|+++++ .+..+.  +.
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~~~~~i~~~-----~~~~l~~L~~L~Ls~n-~l~~~~--~~   97 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSF--SRLQDLQFLKVEQQTPGLVIRNN-----TFRGLSSLIILKLDYN-QFLQLE--TG   97 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTT--SSCTTCCEEECCCCSTTCEECTT-----TTTTCTTCCEEECTTC-TTCEEC--TT
T ss_pred             CCCccCEEEecCCccCcCChhHh--ccCccccEEECcCCcccceECcc-----cccccccCCEEeCCCC-ccCccC--hh
Confidence            44789999999987743323334  78999999999998433355333     5677899999999996 566552  33


Q ss_pred             cccCCCCccEEEecCCCCccc-ccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCc
Q 036689          100 SVQSFNELKTIRVELCDQLSN-IFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPEL  178 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  178 (595)
                      .++.+++|++|++++| .+++ .+....+..+++|++|++++|......+.         .....+++|+.|+++++.--
T Consensus        98 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           98 AFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA---------SFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC---------GGGGGCTTCCEEECTTCCBS
T ss_pred             hccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcc---------cccCCCCcccEEeCCCCccc
Confidence            4788999999999996 5554 23223478899999999998653322221         01345789999999876422


Q ss_pred             cccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCc----cccccCCCc
Q 036689          179 TSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPV----AMFLCFQNL  254 (595)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~----~~~~~l~~L  254 (595)
                      ...+.                               .+.. ....+|+.|+++++.+..+....+..    .+ ..+++|
T Consensus       168 ~~~~~-------------------------------~l~~-l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~~~~L  214 (455)
T 3v47_A          168 SICEE-------------------------------DLLN-FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FKNTSI  214 (455)
T ss_dssp             CCCTT-------------------------------TSGG-GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT-TTTCEE
T ss_pred             ccChh-------------------------------hhhc-cccccccccccccCcccccchhhccccccccc-ccccee
Confidence            11110                               0110 11367889999988776653221110    00 245789


Q ss_pred             cEEEEecCCCCccccchhhhh--ccCCCcEEEeecccc
Q 036689          255 TRLILRKCPKLKYIFSASMLG--SFEHLQHLEIRYCKG  290 (595)
Q Consensus       255 ~~L~L~~c~~l~~l~~~~~~~--~l~~L~~L~l~~c~~  290 (595)
                      +.|+++++. ++...+..+..  ..++|+.|+++++..
T Consensus       215 ~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~  251 (455)
T 3v47_A          215 TTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYN  251 (455)
T ss_dssp             EEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred             eeEecCCCc-ccccchhhhhccccccceeeEeeccccc
Confidence            999999864 44433332221  137899999988863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.89  E-value=4.1e-22  Score=206.05  Aligned_cols=86  Identities=16%  Similarity=0.195  Sum_probs=50.6

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      -.++++++|.++++ .++.+++.     .+..+++|++|+++++ .++.+..  ..+..+++|++|++++| .++.+++ 
T Consensus        42 ~~l~~l~~l~l~~~-~l~~l~~~-----~~~~l~~L~~L~L~~n-~i~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~-  110 (390)
T 3o6n_A           42 ITLNNQKIVTFKNS-TMRKLPAA-----LLDSFRQVELLNLNDL-QIEEIDT--YAFAYAHTIQKLYMGFN-AIRYLPP-  110 (390)
T ss_dssp             GGGCCCSEEEEESC-EESEECTH-----HHHHCCCCSEEECTTS-CCCEECT--TTTTTCTTCCEEECCSS-CCCCCCT-
T ss_pred             cccCCceEEEecCC-chhhCChh-----HhcccccCcEEECCCC-cccccCh--hhccCCCCcCEEECCCC-CCCcCCH-
Confidence            35667777777666 56655322     3445667777777764 4554422  12556667777777764 4555443 


Q ss_pred             hhhhcCCCCcEEEEccc
Q 036689          125 SAAKCLPRLERIAVINC  141 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c  141 (595)
                      ..++++++|++|++++|
T Consensus       111 ~~~~~l~~L~~L~L~~n  127 (390)
T 3o6n_A          111 HVFQNVPLLTVLVLERN  127 (390)
T ss_dssp             TTTTTCTTCCEEECCSS
T ss_pred             HHhcCCCCCCEEECCCC
Confidence            44566666777776663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.89  E-value=2e-22  Score=211.84  Aligned_cols=58  Identities=16%  Similarity=0.209  Sum_probs=27.7

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccce
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQE  293 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~  293 (595)
                      +++|++|++++|.++.+     |..    .++|++|+++++ .++.++   .++++++|++|++++|. +++
T Consensus       152 l~~L~~L~l~~N~l~~l-----p~~----~~~L~~L~L~~n-~l~~l~---~~~~l~~L~~L~l~~N~-l~~  209 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKKL-----PDL----PPSLEFIAAGNN-QLEELP---ELQNLPFLTAIYADNNS-LKK  209 (454)
T ss_dssp             CTTCCEEECCSSCCSCC-----CCC----CTTCCEEECCSS-CCSSCC---CCTTCTTCCEEECCSSC-CSS
T ss_pred             CCCCCEEECCCCcCccc-----CCC----cccccEEECcCC-cCCcCc---cccCCCCCCEEECCCCc-CCc
Confidence            45555555555544433     322    245555555543 333332   13455555555555554 443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=3.5e-21  Score=204.65  Aligned_cols=301  Identities=22%  Similarity=0.262  Sum_probs=203.4

Q ss_pred             cCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhh
Q 036689           47 FLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSA  126 (595)
Q Consensus        47 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~  126 (595)
                      .+++++|+|+++ .++.+.+.     .+..+++|++|+++++ .+..+.  +..+..+++|++|+++++ .++.++. ..
T Consensus        31 ~~~l~~L~L~~n-~l~~~~~~-----~~~~l~~L~~L~L~~n-~i~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~   99 (477)
T 2id5_A           31 PTETRLLDLGKN-RIKTLNQD-----EFASFPHLEELELNEN-IVSAVE--PGAFNNLFNLRTLGLRSN-RLKLIPL-GV   99 (477)
T ss_dssp             CTTCSEEECCSS-CCCEECTT-----TTTTCTTCCEEECTTS-CCCEEC--TTTTTTCTTCCEEECCSS-CCCSCCT-TS
T ss_pred             CCCCcEEECCCC-ccceECHh-----HccCCCCCCEEECCCC-ccCEeC--hhhhhCCccCCEEECCCC-cCCccCc-cc
Confidence            357777888777 67666443     4566777888887775 555542  223667777888888774 5665553 45


Q ss_pred             hhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccccc
Q 036689          127 AKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLE  206 (595)
Q Consensus       127 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (595)
                      +.++++|++|++++|. +..++..                                                        
T Consensus       100 ~~~l~~L~~L~Ls~n~-i~~~~~~--------------------------------------------------------  122 (477)
T 2id5_A          100 FTGLSNLTKLDISENK-IVILLDY--------------------------------------------------------  122 (477)
T ss_dssp             STTCTTCCEEECTTSC-CCEECTT--------------------------------------------------------
T ss_pred             ccCCCCCCEEECCCCc-cccCChh--------------------------------------------------------
Confidence            6677777777777743 2222100                                                        


Q ss_pred             ccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEee
Q 036689          207 DKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIR  286 (595)
Q Consensus       207 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~  286 (595)
                              .|   ..+++|+.|++++|.++.+....+     ..+++|+.|+++++ .++.+++ ..+.++++|++|+++
T Consensus       123 --------~~---~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n-~l~~~~~-~~l~~l~~L~~L~l~  184 (477)
T 2id5_A          123 --------MF---QDLYNLKSLEVGDNDLVYISHRAF-----SGLNSLEQLTLEKC-NLTSIPT-EALSHLHGLIVLRLR  184 (477)
T ss_dssp             --------TT---TTCTTCCEEEECCTTCCEECTTSS-----TTCTTCCEEEEESC-CCSSCCH-HHHTTCTTCCEEEEE
T ss_pred             --------Hc---cccccCCEEECCCCccceeChhhc-----cCCCCCCEEECCCC-cCcccCh-hHhcccCCCcEEeCC
Confidence                    01   136778888888887766632222     46788888888876 5666433 456788888888888


Q ss_pred             cccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCC
Q 036689          287 YCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEE  366 (595)
Q Consensus       287 ~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~  366 (595)
                      ++. ++.++...+..        +++|+.|++++++.+..++.....  ..+|+.|++++|. ++.+|.           
T Consensus       185 ~n~-i~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n~-l~~~~~-----------  241 (477)
T 2id5_A          185 HLN-INAIRDYSFKR--------LYRLKVLEISHWPYLDTMTPNCLY--GLNLTSLSITHCN-LTAVPY-----------  241 (477)
T ss_dssp             SCC-CCEECTTCSCS--------CTTCCEEEEECCTTCCEECTTTTT--TCCCSEEEEESSC-CCSCCH-----------
T ss_pred             CCc-CcEeChhhccc--------CcccceeeCCCCccccccCccccc--CccccEEECcCCc-ccccCH-----------
Confidence            887 77765533322        788888888888777766654332  4588888888874 555553           


Q ss_pred             CCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCC
Q 036689          367 DKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRN  446 (595)
Q Consensus       367 ~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~  446 (595)
                                  ..+..+++|++|++++|....+...  ....+++|+.|++.          .+.+..+.+..+..+++
T Consensus       242 ------------~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~----------~n~l~~~~~~~~~~l~~  297 (477)
T 2id5_A          242 ------------LAVRHLVYLRFLNLSYNPISTIEGS--MLHELLRLQEIQLV----------GGQLAVVEPYAFRGLNY  297 (477)
T ss_dssp             ------------HHHTTCTTCCEEECCSSCCCEECTT--SCTTCTTCCEEECC----------SSCCSEECTTTBTTCTT
T ss_pred             ------------HHhcCccccCeeECCCCcCCccChh--hccccccCCEEECC----------CCccceECHHHhcCccc
Confidence                        2245778899999988876554332  23466788888884          45677777777888899


Q ss_pred             ccEEeEeCCCCCcccccchHHhhcccccEEEEcCcc
Q 036689          447 LKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCR  482 (595)
Q Consensus       447 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  482 (595)
                      |+.|++++ +.++.++ ...+..+++|++|++++++
T Consensus       298 L~~L~L~~-N~l~~~~-~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          298 LRVLNVSG-NQLTTLE-ESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CCEEECCS-SCCSCCC-GGGBSCGGGCCEEECCSSC
T ss_pred             CCEEECCC-CcCceeC-HhHcCCCcccCEEEccCCC
Confidence            99999998 4677763 3455778999999998775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=6.7e-21  Score=209.81  Aligned_cols=443  Identities=15%  Similarity=0.088  Sum_probs=238.0

Q ss_pred             ccccEEEeccCCCCccccc-cccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689           22 KDVEYLCLDKSQDVKNVLF-DLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS  100 (595)
Q Consensus        22 ~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  100 (595)
                      .++++|+|+++.. +.+++ .+  .++++|++|+|++| +++.+++.     .+..+++|++|+|+++ +++.+..+  .
T Consensus        52 ~~~~~LdLs~N~i-~~l~~~~f--~~l~~L~~L~Ls~N-~i~~i~~~-----~f~~L~~L~~L~Ls~N-~l~~l~~~--~  119 (635)
T 4g8a_A           52 FSTKNLDLSFNPL-RHLGSYSF--FSFPELQVLDLSRC-EIQTIEDG-----AYQSLSHLSTLILTGN-PIQSLALG--A  119 (635)
T ss_dssp             TTCCEEECTTSCC-CEECTTTT--TTCTTCCEEECTTC-CCCEECTT-----TTTTCTTCCEEECTTC-CCCEECGG--G
T ss_pred             cCCCEEEeeCCCC-CCCCHHHH--hCCCCCCEEECCCC-cCCCcChh-----HhcCCCCCCEEEccCC-cCCCCCHH--H
Confidence            5799999999877 44443 34  78999999999999 79888655     5778999999999996 77776433  3


Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS  180 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  180 (595)
                      +..+++|++|++++| .++.+++ ..++++++|++|++++|. +..+...        .....+++|++|+++++. ++.
T Consensus       120 f~~L~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N~-l~~~~~~--------~~~~~l~~L~~L~L~~N~-l~~  187 (635)
T 4g8a_A          120 FSGLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNL-IQSFKLP--------EYFSNLTNLEHLDLSSNK-IQS  187 (635)
T ss_dssp             GTTCTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSSC-CCCCCCC--------GGGGGCTTCCEEECCSSC-CCE
T ss_pred             hcCCCCCCEEECCCC-cCCCCCh-hhhhcCcccCeeccccCc-cccCCCc--------hhhccchhhhhhcccCcc-ccc
Confidence            678999999999995 6777754 567889999999999854 4332210        223457889999998754 333


Q ss_pred             ccccc-cc-cccccccccc-ccCccccccccccCCCccccccccCCccceeecccccce-eecccCCCccccccCCCccE
Q 036689          181 FCCEV-KK-NRQAQGMHET-CSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIE-KIWHNQLPVAMFLCFQNLTR  256 (595)
Q Consensus       181 ~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~~~l~~L~~  256 (595)
                      +.... .. .......... ....     ....+....+    ....++.+++.++... .+     +...+..+..++.
T Consensus       188 ~~~~~l~~L~~l~~~~~~~~ls~n-----~l~~i~~~~~----~~~~~~~l~l~~n~~~~~~-----~~~~~~~l~~l~~  253 (635)
T 4g8a_A          188 IYCTDLRVLHQMPLLNLSLDLSLN-----PMNFIQPGAF----KEIRLHKLTLRNNFDSLNV-----MKTCIQGLAGLEV  253 (635)
T ss_dssp             ECGGGGHHHHTCTTCCCEEECTTC-----CCCEECTTTT----TTCEEEEEEEESCCSSHHH-----HHHHHHTTTTCEE
T ss_pred             cccccccchhhhhhhhhhhhcccC-----cccccCcccc----cchhhhhhhhhcccccccc-----cchhhcCCccccc
Confidence            22211 00 0000000000 0000     0000000001    1223344444443110 00     0000012233332


Q ss_pred             EEEec--CCC---Cccccc--------------------------hhhhhccCCCcEEEeecccccceecccccCCCCCC
Q 036689          257 LILRK--CPK---LKYIFS--------------------------ASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVP  305 (595)
Q Consensus       257 L~L~~--c~~---l~~l~~--------------------------~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  305 (595)
                      ..+..  ...   +.....                          ...+..+.+++.+.+.++. +..+....       
T Consensus       254 ~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~-------  325 (635)
T 4g8a_A          254 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-IERVKDFS-------  325 (635)
T ss_dssp             EEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-EEECGGGG-------
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-cccccccc-------
Confidence            22211  000   000000                          0011222333333333333 22221100       


Q ss_pred             CCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCC
Q 036689          306 PNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFP  385 (595)
Q Consensus       306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  385 (595)
                         ....|+.|++.++. +..+...    .++.|+.+.+..+......+                          ...++
T Consensus       326 ---~~~~L~~L~l~~~~-~~~~~~~----~l~~L~~l~l~~n~~~~~~~--------------------------~~~l~  371 (635)
T 4g8a_A          326 ---YNFGWQHLELVNCK-FGQFPTL----KLKSLKRLTFTSNKGGNAFS--------------------------EVDLP  371 (635)
T ss_dssp             ---SCCCCSEEEEESCE-ESSCCCC----BCTTCCEEEEESCCSCCBCC--------------------------CCBCT
T ss_pred             ---cchhhhhhhccccc-ccCcCcc----cchhhhhcccccccCCCCcc--------------------------ccccc
Confidence               13344444444432 1111110    13333333333322111100                          12345


Q ss_pred             CcceEeccCCCCeeccCCC-----------------------CCcccccCceeEEeeccccccccccCccccccCCCCcc
Q 036689          386 NLEELGLDGKDIRMIWHGD-----------------------FPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSV  442 (595)
Q Consensus       386 ~L~~L~l~~~~~~~~~~~~-----------------------~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~  442 (595)
                      +|+.|+++++.........                       .....+++|+.+++.         .++.........+.
T Consensus       372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~---------~~~~~~~~~~~~~~  442 (635)
T 4g8a_A          372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ---------HSNLKQMSEFSVFL  442 (635)
T ss_dssp             TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECT---------TSEEESTTSSCTTT
T ss_pred             ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhh---------hccccccccccccc
Confidence            5555555554432211000                       011233445555442         22333333344566


Q ss_pred             ccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccC
Q 036689          443 SFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSG  522 (595)
Q Consensus       443 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~  522 (595)
                      .+++++.++++. +.+....+ ..+..++.|++|+++++.....+......       .+++|+.|+++++ .++.++..
T Consensus       443 ~l~~l~~l~ls~-n~l~~~~~-~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~-------~l~~L~~L~Ls~N-~L~~l~~~  512 (635)
T 4g8a_A          443 SLRNLIYLDISH-THTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFT-------ELRNLTFLDLSQC-QLEQLSPT  512 (635)
T ss_dssp             TCTTCCEEECTT-SCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCT-------TCTTCCEEECTTS-CCCEECTT
T ss_pred             cccccccccccc-cccccccc-cccccchhhhhhhhhhcccccccCchhhh-------hccccCEEECCCC-ccCCcChH
Confidence            788899999987 45665533 45577899999999998756555443332       4899999999996 78877655


Q ss_pred             cccccCCCccEEEEeCCCCccccCC-CCCCCCCcceEEeccCCC
Q 036689          523 NYIFKFPSLEVLFVVGCPKMNIFTT-GELSTPPRVDVMYRNRGA  565 (595)
Q Consensus       523 ~~~~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~i~~~~~  565 (595)
                      .+. .+++|++|+++++ +++.+|. .+..+++|++|++++|.-
T Consensus       513 ~f~-~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l  554 (635)
T 4g8a_A          513 AFN-SLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHI  554 (635)
T ss_dssp             TTT-TCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred             HHc-CCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcC
Confidence            432 5899999999997 7888765 467799999999998765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.88  E-value=1.6e-21  Score=198.34  Aligned_cols=304  Identities=16%  Similarity=0.224  Sum_probs=162.7

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      ..+++|++|+++++ .++.+.       .+..+++|++|+++++ .++.+..    +..+++|++|++++| .++++   
T Consensus        41 ~~l~~L~~L~l~~~-~i~~~~-------~~~~~~~L~~L~l~~n-~i~~~~~----~~~l~~L~~L~L~~n-~i~~~---  103 (347)
T 4fmz_A           41 EELESITKLVVAGE-KVASIQ-------GIEYLTNLEYLNLNGN-QITDISP----LSNLVKLTNLYIGTN-KITDI---  103 (347)
T ss_dssp             HHHTTCSEEECCSS-CCCCCT-------TGGGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSS-CCCCC---
T ss_pred             hhcccccEEEEeCC-ccccch-------hhhhcCCccEEEccCC-ccccchh----hhcCCcCCEEEccCC-cccCc---
Confidence            45555666666555 343321       2344555666666554 4443311    455556666666654 44443   


Q ss_pred             hhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccc
Q 036689          125 SAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISS  204 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (595)
                      +.+.++++|++|++++|. +..++           ....+++|+.|+++++..+....                      
T Consensus       104 ~~~~~l~~L~~L~l~~n~-i~~~~-----------~~~~l~~L~~L~l~~n~~~~~~~----------------------  149 (347)
T 4fmz_A          104 SALQNLTNLRELYLNEDN-ISDIS-----------PLANLTKMYSLNLGANHNLSDLS----------------------  149 (347)
T ss_dssp             GGGTTCTTCSEEECTTSC-CCCCG-----------GGTTCTTCCEEECTTCTTCCCCG----------------------
T ss_pred             hHHcCCCcCCEEECcCCc-ccCch-----------hhccCCceeEEECCCCCCccccc----------------------
Confidence            234555666666665532 22221           12234445555555444333211                      


Q ss_pred             ccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEE
Q 036689          205 LEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLE  284 (595)
Q Consensus       205 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~  284 (595)
                                   ....+++|++|++++|.+..+     +. + ..+++|+.|++++| .++++.+   +..+++|++|+
T Consensus       150 -------------~~~~l~~L~~L~l~~~~~~~~-----~~-~-~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~  205 (347)
T 4fmz_A          150 -------------PLSNMTGLNYLTVTESKVKDV-----TP-I-ANLTDLYSLSLNYN-QIEDISP---LASLTSLHYFT  205 (347)
T ss_dssp             -------------GGTTCTTCCEEECCSSCCCCC-----GG-G-GGCTTCSEEECTTS-CCCCCGG---GGGCTTCCEEE
T ss_pred             -------------chhhCCCCcEEEecCCCcCCc-----hh-h-ccCCCCCEEEccCC-ccccccc---ccCCCccceee
Confidence                         112356667777776655544     22 1 35677777777765 3444332   45667777777


Q ss_pred             eecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCC
Q 036689          285 IRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESS  364 (595)
Q Consensus       285 l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~  364 (595)
                      ++++. ++.++.  ..        .+++|++|+++++. +..++.   ...+++|+.|++++|. ++.++.         
T Consensus       206 l~~n~-l~~~~~--~~--------~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~---------  260 (347)
T 4fmz_A          206 AYVNQ-ITDITP--VA--------NMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTNQ-ISDINA---------  260 (347)
T ss_dssp             CCSSC-CCCCGG--GG--------GCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCCGG---------
T ss_pred             cccCC-CCCCch--hh--------cCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCCc-cCCChh---------
Confidence            77665 554432  11        16667777776643 333222   1225667777766653 333332         


Q ss_pred             CCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCcccc
Q 036689          365 EEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSF  444 (595)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l  444 (595)
                                      +..+++|++|++++|....                                    + + .+..+
T Consensus       261 ----------------~~~l~~L~~L~l~~n~l~~------------------------------------~-~-~~~~l  286 (347)
T 4fmz_A          261 ----------------VKDLTKLKMLNVGSNQISD------------------------------------I-S-VLNNL  286 (347)
T ss_dssp             ----------------GTTCTTCCEEECCSSCCCC------------------------------------C-G-GGGGC
T ss_pred             ----------------HhcCCCcCEEEccCCccCC------------------------------------C-h-hhcCC
Confidence                            3456677777776664221                                    1 1 34456


Q ss_pred             CCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccc
Q 036689          445 RNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLD  514 (595)
Q Consensus       445 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~  514 (595)
                      ++|+.|++++| .++...+ ..++.+++|++|++++|+ ++.++. ..        .+++|+.|++++++
T Consensus       287 ~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~-~~--------~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          287 SQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP-LA--------SLSKMDSADFANQV  344 (347)
T ss_dssp             TTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG-GG--------GCTTCSEESSSCC-
T ss_pred             CCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-cccccC-hh--------hhhccceeehhhhc
Confidence            78888888885 4554422 445678888888888887 555543 22        37888888888763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.88  E-value=4.1e-21  Score=198.54  Aligned_cols=236  Identities=17%  Similarity=0.171  Sum_probs=146.5

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  300 (595)
                      .+++|++|++++|.++.+     |..++..+++|++|+++++ .++.+.+ ..++.+++|++|+++++. ++.++.    
T Consensus       115 ~l~~L~~L~L~~n~l~~l-----~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~----  182 (390)
T 3o6n_A          115 NVPLLTVLVLERNDLSSL-----PRGIFHNTPKLTTLSMSNN-NLERIED-DTFQATTSLQNLQLSSNR-LTHVDL----  182 (390)
T ss_dssp             TCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCCBCCT-TTTSSCTTCCEEECCSSC-CSBCCG----
T ss_pred             CCCCCCEEECCCCccCcC-----CHHHhcCCCCCcEEECCCC-ccCccCh-hhccCCCCCCEEECCCCc-CCcccc----
Confidence            356677777777766554     4433345667777777664 3444333 234666677777777665 554422    


Q ss_pred             CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689          301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP  380 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  380 (595)
                             ..+++|+.|+++++. +..+..      .++|+.|+++++. ++.+|.                         
T Consensus       183 -------~~l~~L~~L~l~~n~-l~~~~~------~~~L~~L~l~~n~-l~~~~~-------------------------  222 (390)
T 3o6n_A          183 -------SLIPSLFHANVSYNL-LSTLAI------PIAVEELDASHNS-INVVRG-------------------------  222 (390)
T ss_dssp             -------GGCTTCSEEECCSSC-CSEEEC------CSSCSEEECCSSC-CCEEEC-------------------------
T ss_pred             -------ccccccceeeccccc-ccccCC------CCcceEEECCCCe-eeeccc-------------------------
Confidence                   116666666666632 333221      3556666666543 333333                         


Q ss_pred             CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689          381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN  460 (595)
Q Consensus       381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~  460 (595)
                       ..+++|++|++++|...                                    ..  ..+..+++|+.|+++++ .++.
T Consensus       223 -~~~~~L~~L~l~~n~l~------------------------------------~~--~~l~~l~~L~~L~Ls~n-~l~~  262 (390)
T 3o6n_A          223 -PVNVELTILKLQHNNLT------------------------------------DT--AWLLNYPGLVEVDLSYN-ELEK  262 (390)
T ss_dssp             -CCCSSCCEEECCSSCCC------------------------------------CC--GGGGGCTTCSEEECCSS-CCCE
T ss_pred             -cccccccEEECCCCCCc------------------------------------cc--HHHcCCCCccEEECCCC-cCCC
Confidence             23455666666665422                                    21  14556788888888884 5666


Q ss_pred             cccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCC
Q 036689          461 LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCP  540 (595)
Q Consensus       461 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~  540 (595)
                      ..+ ..+..+++|++|++++|. ++.++.....        +++|+.|+++++ .++.++...  ..+++|++|++++|+
T Consensus       263 ~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~--------l~~L~~L~L~~n-~l~~~~~~~--~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          263 IMY-HPFVKMQRLERLYISNNR-LVALNLYGQP--------IPTLKVLDLSHN-HLLHVERNQ--PQFDRLENLYLDHNS  329 (390)
T ss_dssp             EES-GGGTTCSSCCEEECCSSC-CCEEECSSSC--------CTTCCEEECCSS-CCCCCGGGH--HHHTTCSEEECCSSC
T ss_pred             cCh-hHccccccCCEEECCCCc-CcccCcccCC--------CCCCCEEECCCC-cceecCccc--cccCcCCEEECCCCc
Confidence            533 445778889999998876 6666544433        888999999886 677777654  348889999999874


Q ss_pred             CccccCCCCCCCCCcceEEeccCC
Q 036689          541 KMNIFTTGELSTPPRVDVMYRNRG  564 (595)
Q Consensus       541 ~l~~lp~~~~~~~~L~~l~i~~~~  564 (595)
                       ++.+|  ...+++|+++++++|.
T Consensus       330 -i~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          330 -IVTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             -CCCCC--CCTTCCCSEEECCSSC
T ss_pred             -cceeC--chhhccCCEEEcCCCC
Confidence             66665  4568899999988654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.7e-21  Score=212.65  Aligned_cols=309  Identities=18%  Similarity=0.175  Sum_probs=163.1

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      -.+++++.|.+.++ .++.+++.     .+..+++|++|+++++ .+..+..  ..++.+++|++|++++| .++.+++ 
T Consensus        48 l~l~~l~~l~l~~~-~l~~lp~~-----~~~~l~~L~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~-  116 (597)
T 3oja_B           48 ITLNNQKIVTFKNS-TMRKLPAA-----LLDSFRQVELLNLNDL-QIEEIDT--YAFAYAHTIQKLYMGFN-AIRYLPP-  116 (597)
T ss_dssp             GGGCCCSEEEESSC-EESEECTH-----HHHHCCCCSEEECTTS-CCCEECT--TTTTTCTTCCEEECCSS-CCCCCCT-
T ss_pred             ccCCCceEEEeeCC-CCCCcCHH-----HHccCCCCcEEECCCC-CCCCCCh--HHhcCCCCCCEEECCCC-cCCCCCH-
Confidence            35677788888776 56666433     3456777888888875 5665532  23667778888888875 4666554 


Q ss_pred             hhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccc
Q 036689          125 SAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISS  204 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (595)
                      ..++++++|++|++++| .+..++..         ...                                          
T Consensus       117 ~~~~~l~~L~~L~L~~n-~l~~l~~~---------~~~------------------------------------------  144 (597)
T 3oja_B          117 HVFQNVPLLTVLVLERN-DLSSLPRG---------IFH------------------------------------------  144 (597)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTT---------TTT------------------------------------------
T ss_pred             HHHcCCCCCCEEEeeCC-CCCCCCHH---------Hhc------------------------------------------
Confidence            55677788888888774 33333311         001                                          


Q ss_pred             ccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEE
Q 036689          205 LEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLE  284 (595)
Q Consensus       205 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~  284 (595)
                                      .+++|++|++++|.++.+.    |..+ ..+++|+.|+++++ .++.+ +   ++.+++|++|+
T Consensus       145 ----------------~l~~L~~L~Ls~N~l~~~~----~~~~-~~l~~L~~L~L~~N-~l~~~-~---~~~l~~L~~L~  198 (597)
T 3oja_B          145 ----------------NTPKLTTLSMSNNNLERIE----DDTF-QATTSLQNLQLSSN-RLTHV-D---LSLIPSLFHAN  198 (597)
T ss_dssp             ----------------TCTTCCEEECCSSCCCBCC----TTTT-TTCTTCCEEECTTS-CCSBC-C---GGGCTTCSEEE
T ss_pred             ----------------cCCCCCEEEeeCCcCCCCC----hhhh-hcCCcCcEEECcCC-CCCCc-C---hhhhhhhhhhh
Confidence                            2344455555544443331    1111 34455555555543 23332 1   13445555555


Q ss_pred             eecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCC
Q 036689          285 IRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESS  364 (595)
Q Consensus       285 l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~  364 (595)
                      ++++. ++.++.             .++|+.|+++++. +..++...    .++|+.|++++|. ++..+.         
T Consensus       199 l~~n~-l~~l~~-------------~~~L~~L~ls~n~-l~~~~~~~----~~~L~~L~L~~n~-l~~~~~---------  249 (597)
T 3oja_B          199 VSYNL-LSTLAI-------------PIAVEELDASHNS-INVVRGPV----NVELTILKLQHNN-LTDTAW---------  249 (597)
T ss_dssp             CCSSC-CSEEEC-------------CTTCSEEECCSSC-CCEEECSC----CSCCCEEECCSSC-CCCCGG---------
T ss_pred             cccCc-cccccC-------------CchhheeeccCCc-cccccccc----CCCCCEEECCCCC-CCCChh---------
Confidence            55544 443322             3445555555532 33222211    3445555555443 111111         


Q ss_pred             CCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCcccc
Q 036689          365 EEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSF  444 (595)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l  444 (595)
                                      +..+++|++|++++|....+.+.  ....+++|+.|+++          .+.+..++. .+..+
T Consensus       250 ----------------l~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls----------~N~l~~l~~-~~~~l  300 (597)
T 3oja_B          250 ----------------LLNYPGLVEVDLSYNELEKIMYH--PFVKMQRLERLYIS----------NNRLVALNL-YGQPI  300 (597)
T ss_dssp             ----------------GGGCTTCSEEECCSSCCCEEESG--GGTTCSSCCEEECT----------TSCCCEEEC-SSSCC
T ss_pred             ----------------hccCCCCCEEECCCCccCCCCHH--HhcCccCCCEEECC----------CCCCCCCCc-ccccC
Confidence                            23455555555555544332211  11233444444442          223333333 44557


Q ss_pred             CCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccc
Q 036689          445 RNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLD  514 (595)
Q Consensus       445 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~  514 (595)
                      ++|+.|++++| .+..++  ..+..+++|++|++++|. +..++.  .        .+++|+.|++++++
T Consensus       301 ~~L~~L~Ls~N-~l~~i~--~~~~~l~~L~~L~L~~N~-l~~~~~--~--------~~~~L~~L~l~~N~  356 (597)
T 3oja_B          301 PTLKVLDLSHN-HLLHVE--RNQPQFDRLENLYLDHNS-IVTLKL--S--------THHTLKNLTLSHND  356 (597)
T ss_dssp             TTCCEEECCSS-CCCCCG--GGHHHHTTCSEEECCSSC-CCCCCC--C--------TTCCCSEEECCSSC
T ss_pred             CCCcEEECCCC-CCCccC--cccccCCCCCEEECCCCC-CCCcCh--h--------hcCCCCEEEeeCCC
Confidence            78888888884 566553  234677888888888876 555531  1        37788888888754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.88  E-value=2.7e-21  Score=203.43  Aligned_cols=307  Identities=18%  Similarity=0.157  Sum_probs=218.2

Q ss_pred             cccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccc
Q 036689           17 KLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ   96 (595)
Q Consensus        17 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   96 (595)
                      .++.+++|++|+++++... .+ +.+  +.+++|++|++++| .++.+        .+..+++|++|+++++ .++.+  
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~-~~-~~l--~~l~~L~~L~Ls~n-~l~~~--------~~~~l~~L~~L~Ls~N-~l~~~--  100 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSIT-DM-TGI--EKLTGLTKLICTSN-NITTL--------DLSQNTNLTYLACDSN-KLTNL--  100 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCC-CC-TTG--GGCTTCSEEECCSS-CCSCC--------CCTTCTTCSEEECCSS-CCSCC--
T ss_pred             ChhHcCCCCEEEccCCCcc-cC-hhh--cccCCCCEEEccCC-cCCeE--------ccccCCCCCEEECcCC-CCcee--
Confidence            3447899999999998764 44 344  89999999999998 67654        3567899999999996 67665  


Q ss_pred             ccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCC
Q 036689           97 DRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLP  176 (595)
Q Consensus        97 ~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  176 (595)
                       +  ++.+++|++|++++| .++.++    ++.+++|++|++++|. +..++            ...+++|+.|+++++.
T Consensus       101 -~--~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~-l~~l~------------l~~l~~L~~L~l~~n~  159 (457)
T 3bz5_A          101 -D--VTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNT-LTEID------------VSHNTQLTELDCHLNK  159 (457)
T ss_dssp             -C--CTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSC-CSCCC------------CTTCTTCCEEECTTCS
T ss_pred             -e--cCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCCc-cceec------------cccCCcCCEEECCCCC
Confidence             2  778999999999995 677653    6789999999999854 44332            3357889999998876


Q ss_pred             CccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccE
Q 036689          177 ELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTR  256 (595)
Q Consensus       177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~  256 (595)
                      .+..+.                                    ...+++|+.|++++|+++.+     |  + ..+++|+.
T Consensus       160 ~~~~~~------------------------------------~~~l~~L~~L~ls~n~l~~l-----~--l-~~l~~L~~  195 (457)
T 3bz5_A          160 KITKLD------------------------------------VTPQTQLTTLDCSFNKITEL-----D--V-SQNKLLNR  195 (457)
T ss_dssp             CCCCCC------------------------------------CTTCTTCCEEECCSSCCCCC-----C--C-TTCTTCCE
T ss_pred             cccccc------------------------------------cccCCcCCEEECCCCcccee-----c--c-ccCCCCCE
Confidence            555432                                    12478899999999988776     4  1 46899999


Q ss_pred             EEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccC
Q 036689          257 LILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEW  336 (595)
Q Consensus       257 L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~  336 (595)
                      |+++++ .++.+ +   ++.+++|++|++++|. +++++.   .        .+++|+.|+++++. +..++.+.    +
T Consensus       196 L~l~~N-~l~~~-~---l~~l~~L~~L~Ls~N~-l~~ip~---~--------~l~~L~~L~l~~N~-l~~~~~~~----l  253 (457)
T 3bz5_A          196 LNCDTN-NITKL-D---LNQNIQLTFLDCSSNK-LTEIDV---T--------PLTQLTYFDCSVNP-LTELDVST----L  253 (457)
T ss_dssp             EECCSS-CCSCC-C---CTTCTTCSEEECCSSC-CSCCCC---T--------TCTTCSEEECCSSC-CSCCCCTT----C
T ss_pred             EECcCC-cCCee-c---cccCCCCCEEECcCCc-ccccCc---c--------ccCCCCEEEeeCCc-CCCcCHHH----C
Confidence            999976 56654 2   4788999999999997 777642   1        28899999999854 55554332    5


Q ss_pred             cccceee----------ecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCC
Q 036689          337 PALKLLD----------VSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFP  406 (595)
Q Consensus       337 ~~L~~L~----------l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  406 (595)
                      ++|+.|.          +++|..+..+|.                          +.+++|+.|++++|+..+.++.   
T Consensus       254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--------------------------~~l~~L~~L~Ls~n~~l~~l~~---  304 (457)
T 3bz5_A          254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQA--------------------------EGCRKIKELDVTHNTQLYLLDC---  304 (457)
T ss_dssp             TTCCEEECTTCCCSCCCCTTCTTCCEEEC--------------------------TTCTTCCCCCCTTCTTCCEEEC---
T ss_pred             CCCCEEeccCCCCCEEECCCCccCCcccc--------------------------cccccCCEEECCCCcccceecc---
Confidence            5555554          444443333333                          4678899999999886653321   


Q ss_pred             cccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccc
Q 036689          407 QHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQ  486 (595)
Q Consensus       407 ~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  486 (595)
                        ..++|+.+++                       ..+++|+.|++++ +.++.+ +   ++.+++|++|+++++. +++
T Consensus       305 --~~~~L~~L~l-----------------------~~~~~L~~L~L~~-N~l~~l-~---l~~l~~L~~L~l~~N~-l~~  353 (457)
T 3bz5_A          305 --QAAGITELDL-----------------------SQNPKLVYLYLNN-TELTEL-D---VSHNTKLKSLSCVNAH-IQD  353 (457)
T ss_dssp             --TTCCCSCCCC-----------------------TTCTTCCEEECTT-CCCSCC-C---CTTCTTCSEEECCSSC-CCB
T ss_pred             --CCCcceEech-----------------------hhcccCCEEECCC-Cccccc-c---cccCCcCcEEECCCCC-CCC
Confidence              1233333333                       2356888888887 567765 2   4678889999888775 443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.87  E-value=1e-20  Score=198.98  Aligned_cols=310  Identities=18%  Similarity=0.134  Sum_probs=216.1

Q ss_pred             ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689            2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE   81 (595)
Q Consensus         2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~   81 (595)
                      +.|+|..|.+.-.+ +++.+++|++|+++++... .+  ++  +.+++|++|++++| .++.+        .+..+++|+
T Consensus        45 ~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~-~~--~~--~~l~~L~~L~Ls~N-~l~~~--------~~~~l~~L~  109 (457)
T 3bz5_A           45 TSLDCHNSSITDMT-GIEKLTGLTKLICTSNNIT-TL--DL--SQNTNLTYLACDSN-KLTNL--------DVTPLTKLT  109 (457)
T ss_dssp             CEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCS-CC--CC--TTCTTCSEEECCSS-CCSCC--------CCTTCTTCC
T ss_pred             CEEEccCCCcccCh-hhcccCCCCEEEccCCcCC-eE--cc--ccCCCCCEEECcCC-CCcee--------ecCCCCcCC
Confidence            56777776543223 6778999999999999763 33  24  79999999999998 56654        356789999


Q ss_pred             EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689           82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK  161 (595)
Q Consensus        82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  161 (595)
                      +|+++++ .++.+   +  ++.+++|++|++++| .++.++    ++.+++|++|++++|..+..++            .
T Consensus       110 ~L~L~~N-~l~~l---~--~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~------------~  166 (457)
T 3bz5_A          110 YLNCDTN-KLTKL---D--VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD------------V  166 (457)
T ss_dssp             EEECCSS-CCSCC---C--CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC------------C
T ss_pred             EEECCCC-cCCee---c--CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc------------c
Confidence            9999996 77765   2  788999999999995 677652    6689999999999987666542            3


Q ss_pred             ccccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeeccc
Q 036689          162 IEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHN  241 (595)
Q Consensus       162 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  241 (595)
                      ..+++|+.|+++++. ++.++                                    ...+++|+.|++++|.++.+   
T Consensus       167 ~~l~~L~~L~ls~n~-l~~l~------------------------------------l~~l~~L~~L~l~~N~l~~~---  206 (457)
T 3bz5_A          167 TPQTQLTTLDCSFNK-ITELD------------------------------------VSQNKLLNRLNCDTNNITKL---  206 (457)
T ss_dssp             TTCTTCCEEECCSSC-CCCCC------------------------------------CTTCTTCCEEECCSSCCSCC---
T ss_pred             ccCCcCCEEECCCCc-cceec------------------------------------cccCCCCCEEECcCCcCCee---
Confidence            357889999998763 22211                                    12478999999999988765   


Q ss_pred             CCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCC
Q 036689          242 QLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGL  321 (595)
Q Consensus       242 ~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~  321 (595)
                        +  + ..+++|+.|+++++ .++.++    ++.+++|++|+++++. ++.++...... ...-.....+|+.|+++++
T Consensus       207 --~--l-~~l~~L~~L~Ls~N-~l~~ip----~~~l~~L~~L~l~~N~-l~~~~~~~l~~-L~~L~l~~n~L~~L~l~~n  274 (457)
T 3bz5_A          207 --D--L-NQNIQLTFLDCSSN-KLTEID----VTPLTQLTYFDCSVNP-LTELDVSTLSK-LTTLHCIQTDLLEIDLTHN  274 (457)
T ss_dssp             --C--C-TTCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSSC-CSCCCCTTCTT-CCEEECTTCCCSCCCCTTC
T ss_pred             --c--c-ccCCCCCEEECcCC-cccccC----ccccCCCCEEEeeCCc-CCCcCHHHCCC-CCEEeccCCCCCEEECCCC
Confidence              2  1 46899999999986 566653    4788999999999997 87765321100 0000000124455556666


Q ss_pred             CCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeecc
Q 036689          322 PELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIW  401 (595)
Q Consensus       322 ~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~  401 (595)
                      ..+..++.+    .+++|+.|++++|+.++.+|.                           ..++|+.|++++|      
T Consensus       275 ~~~~~~~~~----~l~~L~~L~Ls~n~~l~~l~~---------------------------~~~~L~~L~l~~~------  317 (457)
T 3bz5_A          275 TQLIYFQAE----GCRKIKELDVTHNTQLYLLDC---------------------------QAAGITELDLSQN------  317 (457)
T ss_dssp             TTCCEEECT----TCTTCCCCCCTTCTTCCEEEC---------------------------TTCCCSCCCCTTC------
T ss_pred             ccCCccccc----ccccCCEEECCCCcccceecc---------------------------CCCcceEechhhc------
Confidence            555555432    379999999999998887776                           2355555555554      


Q ss_pred             CCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccc
Q 036689          402 HGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNL  461 (595)
Q Consensus       402 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~  461 (595)
                               ++|+.|++          +.++++.+   .+..+++|+.|++++ +.++++
T Consensus       318 ---------~~L~~L~L----------~~N~l~~l---~l~~l~~L~~L~l~~-N~l~~l  354 (457)
T 3bz5_A          318 ---------PKLVYLYL----------NNTELTEL---DVSHNTKLKSLSCVN-AHIQDF  354 (457)
T ss_dssp             ---------TTCCEEEC----------TTCCCSCC---CCTTCTTCSEEECCS-SCCCBC
T ss_pred             ---------ccCCEEEC----------CCCccccc---ccccCCcCcEEECCC-CCCCCc
Confidence                     24555555          23344443   255678889998888 566653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.86  E-value=1.8e-20  Score=190.55  Aligned_cols=170  Identities=18%  Similarity=0.210  Sum_probs=100.9

Q ss_pred             CCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCc
Q 036689           74 DDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGE  153 (595)
Q Consensus        74 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  153 (595)
                      ...+++|++|++.++ .+..+.    .+..+++|++|++++| .++++++   +..+++|++|++++| .+..++     
T Consensus        40 ~~~l~~L~~L~l~~~-~i~~~~----~~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~~-----  104 (347)
T 4fmz_A           40 QEELESITKLVVAGE-KVASIQ----GIEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDIS-----  104 (347)
T ss_dssp             HHHHTTCSEEECCSS-CCCCCT----TGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG-----
T ss_pred             chhcccccEEEEeCC-ccccch----hhhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCch-----
Confidence            346788888888885 555541    2677888888888886 6666642   778888888888875 333221     


Q ss_pred             ccccccccccccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccc
Q 036689          154 YDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKV  233 (595)
Q Consensus       154 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  233 (595)
                            ..                                                          ..+++|++|++++|
T Consensus       105 ------~~----------------------------------------------------------~~l~~L~~L~l~~n  120 (347)
T 4fmz_A          105 ------AL----------------------------------------------------------QNLTNLRELYLNED  120 (347)
T ss_dssp             ------GG----------------------------------------------------------TTCTTCSEEECTTS
T ss_pred             ------HH----------------------------------------------------------cCCCcCCEEECcCC
Confidence                  01                                                          13556666666666


Q ss_pred             cceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcc
Q 036689          234 NIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQV  313 (595)
Q Consensus       234 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L  313 (595)
                      .++.+     +. + ..+++|+.|++++|..+.....   +..+++|++|++++|. +..++.  ..        .+++|
T Consensus       121 ~i~~~-----~~-~-~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~-~~~~~~--~~--------~l~~L  179 (347)
T 4fmz_A          121 NISDI-----SP-L-ANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESK-VKDVTP--IA--------NLTDL  179 (347)
T ss_dssp             CCCCC-----GG-G-TTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSC-CCCCGG--GG--------GCTTC
T ss_pred             cccCc-----hh-h-ccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCC-cCCchh--hc--------cCCCC
Confidence            55544     22 1 3566677777766655554322   4666677777777665 544432  11        16666


Q ss_pred             cEEeecCCCCcccccCCCccccCcccceeeecCC
Q 036689          314 TILRLVGLPELKCLYPGMHTSEWPALKLLDVSAC  347 (595)
Q Consensus       314 ~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c  347 (595)
                      ++|+++++. +..++.   ...+++|+.|.++++
T Consensus       180 ~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n  209 (347)
T 4fmz_A          180 YSLSLNYNQ-IEDISP---LASLTSLHYFTAYVN  209 (347)
T ss_dssp             SEEECTTSC-CCCCGG---GGGCTTCCEEECCSS
T ss_pred             CEEEccCCc-cccccc---ccCCCccceeecccC
Confidence            777666643 333222   122566666666655

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=2.3e-20  Score=203.69  Aligned_cols=236  Identities=19%  Similarity=0.202  Sum_probs=144.2

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  300 (595)
                      .+++|++|++++|.++.+     |..++..+++|+.|+++++ .++.+++. .++.+++|++|++++|. ++.++..   
T Consensus       121 ~l~~L~~L~L~~n~l~~l-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~---  189 (597)
T 3oja_B          121 NVPLLTVLVLERNDLSSL-----PRGIFHNTPKLTTLSMSNN-NLERIEDD-TFQATTSLQNLQLSSNR-LTHVDLS---  189 (597)
T ss_dssp             TCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECTTSC-CSBCCGG---
T ss_pred             CCCCCCEEEeeCCCCCCC-----CHHHhccCCCCCEEEeeCC-cCCCCChh-hhhcCCcCcEEECcCCC-CCCcChh---
Confidence            467888888888877765     5544356788888888875 45555443 45778888888888886 6655321   


Q ss_pred             CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689          301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP  380 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  380 (595)
                              .+++|+.|+++++ .+..++.      .++|+.|+++++. ++.++.                         
T Consensus       190 --------~l~~L~~L~l~~n-~l~~l~~------~~~L~~L~ls~n~-l~~~~~-------------------------  228 (597)
T 3oja_B          190 --------LIPSLFHANVSYN-LLSTLAI------PIAVEELDASHNS-INVVRG-------------------------  228 (597)
T ss_dssp             --------GCTTCSEEECCSS-CCSEEEC------CTTCSEEECCSSC-CCEEEC-------------------------
T ss_pred             --------hhhhhhhhhcccC-ccccccC------CchhheeeccCCc-cccccc-------------------------
Confidence                    2788888888874 3443322      4678888887764 444443                         


Q ss_pred             CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689          381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN  460 (595)
Q Consensus       381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~  460 (595)
                       ...++|+.|++++|.....    .....+++|+.|+++          .+.+....+..+..+++|+.|++++ +.++.
T Consensus       229 -~~~~~L~~L~L~~n~l~~~----~~l~~l~~L~~L~Ls----------~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~  292 (597)
T 3oja_B          229 -PVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLS----------YNELEKIMYHPFVKMQRLERLYISN-NRLVA  292 (597)
T ss_dssp             -SCCSCCCEEECCSSCCCCC----GGGGGCTTCSEEECC----------SSCCCEEESGGGTTCSSCCEEECTT-SCCCE
T ss_pred             -ccCCCCCEEECCCCCCCCC----hhhccCCCCCEEECC----------CCccCCCCHHHhcCccCCCEEECCC-CCCCC
Confidence             2346788888888765432    223355666666663          2445555554555666666666666 34555


Q ss_pred             cccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCC
Q 036689          461 LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCP  540 (595)
Q Consensus       461 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~  540 (595)
                      ++.  ....+++|++|++++|. +..++....        .+++|+.|+++++ .++.++..    .+++|++|++++++
T Consensus       293 l~~--~~~~l~~L~~L~Ls~N~-l~~i~~~~~--------~l~~L~~L~L~~N-~l~~~~~~----~~~~L~~L~l~~N~  356 (597)
T 3oja_B          293 LNL--YGQPIPTLKVLDLSHNH-LLHVERNQP--------QFDRLENLYLDHN-SIVTLKLS----THHTLKNLTLSHND  356 (597)
T ss_dssp             EEC--SSSCCTTCCEEECCSSC-CCCCGGGHH--------HHTTCSEEECCSS-CCCCCCCC----TTCCCSEEECCSSC
T ss_pred             CCc--ccccCCCCcEEECCCCC-CCccCcccc--------cCCCCCEEECCCC-CCCCcChh----hcCCCCEEEeeCCC
Confidence            421  22446666666666665 555543332        2666666666664 35555432    26666666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=2.6e-20  Score=197.96  Aligned_cols=301  Identities=19%  Similarity=0.199  Sum_probs=214.6

Q ss_pred             CCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccc
Q 036689           77 FPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDA  156 (595)
Q Consensus        77 ~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  156 (595)
                      .+++++|+++++ +++.+..  ..+..+++|++|++++| .++.+.+ ..+.++++|++|++++| .+..++..      
T Consensus        31 ~~~l~~L~L~~n-~l~~~~~--~~~~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~------   98 (477)
T 2id5_A           31 PTETRLLDLGKN-RIKTLNQ--DEFASFPHLEELELNEN-IVSAVEP-GAFNNLFNLRTLGLRSN-RLKLIPLG------   98 (477)
T ss_dssp             CTTCSEEECCSS-CCCEECT--TTTTTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCCSCCTT------
T ss_pred             CCCCcEEECCCC-ccceECH--hHccCCCCCCEEECCCC-ccCEeCh-hhhhCCccCCEEECCCC-cCCccCcc------
Confidence            357788888875 6666532  23667788888888874 5665543 56677788888888774 23332210      


Q ss_pred             cccccccccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccce
Q 036689          157 IDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIE  236 (595)
Q Consensus       157 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  236 (595)
                                                                                .|   ..+++|++|++++|.++
T Consensus        99 ----------------------------------------------------------~~---~~l~~L~~L~Ls~n~i~  117 (477)
T 2id5_A           99 ----------------------------------------------------------VF---TGLSNLTKLDISENKIV  117 (477)
T ss_dssp             ----------------------------------------------------------SS---TTCTTCCEEECTTSCCC
T ss_pred             ----------------------------------------------------------cc---cCCCCCCEEECCCCccc
Confidence                                                                      11   24788999999999887


Q ss_pred             eecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEE
Q 036689          237 KIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTIL  316 (595)
Q Consensus       237 ~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L  316 (595)
                      .+....     +..+++|++|+++++ .++.+.+. .+.++++|++|++++|. ++.++...+..        +++|+.|
T Consensus       118 ~~~~~~-----~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~l~~--------l~~L~~L  181 (477)
T 2id5_A          118 ILLDYM-----FQDLYNLKSLEVGDN-DLVYISHR-AFSGLNSLEQLTLEKCN-LTSIPTEALSH--------LHGLIVL  181 (477)
T ss_dssp             EECTTT-----TTTCTTCCEEEECCT-TCCEECTT-SSTTCTTCCEEEEESCC-CSSCCHHHHTT--------CTTCCEE
T ss_pred             cCChhH-----ccccccCCEEECCCC-ccceeChh-hccCCCCCCEEECCCCc-CcccChhHhcc--------cCCCcEE
Confidence            763222     257899999999975 56665443 46889999999999997 88776533333        8999999


Q ss_pred             eecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCC
Q 036689          317 RLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKD  396 (595)
Q Consensus       317 ~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~  396 (595)
                      ++.++. +..+.... ...+++|+.|++++|+.+..++..                       . ....+|++|++++|.
T Consensus       182 ~l~~n~-i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~-----------------------~-~~~~~L~~L~l~~n~  235 (477)
T 2id5_A          182 RLRHLN-INAIRDYS-FKRLYRLKVLEISHWPYLDTMTPN-----------------------C-LYGLNLTSLSITHCN  235 (477)
T ss_dssp             EEESCC-CCEECTTC-SCSCTTCCEEEEECCTTCCEECTT-----------------------T-TTTCCCSEEEEESSC
T ss_pred             eCCCCc-CcEeChhh-cccCcccceeeCCCCccccccCcc-----------------------c-ccCccccEEECcCCc
Confidence            999965 44443322 233799999999999888877762                       1 234599999999997


Q ss_pred             CeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEE
Q 036689          397 IRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKM  476 (595)
Q Consensus       397 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L  476 (595)
                      ...+..  .....+++|+.|+++          .+.+..+++..+..+++|+.|++++ +.++.+.+ ..+..+++|++|
T Consensus       236 l~~~~~--~~~~~l~~L~~L~Ls----------~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L  301 (477)
T 2id5_A          236 LTAVPY--LAVRHLVYLRFLNLS----------YNPISTIEGSMLHELLRLQEIQLVG-GQLAVVEP-YAFRGLNYLRVL  301 (477)
T ss_dssp             CCSCCH--HHHTTCTTCCEEECC----------SSCCCEECTTSCTTCTTCCEEECCS-SCCSEECT-TTBTTCTTCCEE
T ss_pred             ccccCH--HHhcCccccCeeECC----------CCcCCccChhhccccccCCEEECCC-CccceECH-HHhcCcccCCEE
Confidence            554221  112467899999994          4567777777788899999999999 56777644 445789999999


Q ss_pred             EEcCcccccchhcccCccccccccccccccceeccccc
Q 036689          477 QVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLD  514 (595)
Q Consensus       477 ~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~  514 (595)
                      ++++|. ++.++.....       .+++|+.|++.+++
T Consensus       302 ~L~~N~-l~~~~~~~~~-------~l~~L~~L~l~~N~  331 (477)
T 2id5_A          302 NVSGNQ-LTTLEESVFH-------SVGNLETLILDSNP  331 (477)
T ss_dssp             ECCSSC-CSCCCGGGBS-------CGGGCCEEECCSSC
T ss_pred             ECCCCc-CceeCHhHcC-------CCcccCEEEccCCC
Confidence            999986 7777654433       48899999998854

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=1.3e-22  Score=221.91  Aligned_cols=441  Identities=15%  Similarity=0.057  Sum_probs=245.7

Q ss_pred             ccccccEEEeccCCCCcc---ccccc----------cccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCC-ccEEec
Q 036689           20 GIKDVEYLCLDKSQDVKN---VLFDL----------DREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPI-LESLNL   85 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~---~~~~~----------~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~-L~~L~l   85 (595)
                      .+++|++|++.++.....   ++...          ....+++|++|+|++| .++.....    .....+++ |++|++
T Consensus        71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~----~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLD----RLAKARADDLETLKL  145 (592)
T ss_dssp             HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHH----HHHHHHGGGCCEEEE
T ss_pred             hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHH----HHHHhccccCcEEEC
Confidence            567788888876654321   11111          0126778888888777 34321000    01122444 888888


Q ss_pred             cCccCccccccccccccCCCCccEEEecCCCCccccc---chhhhhcCCCCcEEEEcccCCcceeecccCcccccccccc
Q 036689           86 YNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIF---LLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKI  162 (595)
Q Consensus        86 ~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~  162 (595)
                      .+|..+..... ......+++|++|++++|. +++..   ....+.++++|++|+++++.. ..+..     ........
T Consensus       146 ~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~-~~~~~-----~~l~~~~~  217 (592)
T 3ogk_B          146 DKCSGFTTDGL-LSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEF-AKISP-----KDLETIAR  217 (592)
T ss_dssp             ESCEEEEHHHH-HHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCC-SSCCH-----HHHHHHHH
T ss_pred             cCCCCcCHHHH-HHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCC-CccCH-----HHHHHHHh
Confidence            77753322100 1112367788888888763 33321   113556677888888776432 21100     00111223


Q ss_pred             cccccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccC
Q 036689          163 EFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQ  242 (595)
Q Consensus       163 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~  242 (595)
                      .+++|++|+++++.. ..++                                  .....+++|+.|+++++... .....
T Consensus       218 ~~~~L~~L~L~~~~~-~~l~----------------------------------~~~~~~~~L~~L~l~~~~~~-~~~~~  261 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEI-LELV----------------------------------GFFKAAANLEEFCGGSLNED-IGMPE  261 (592)
T ss_dssp             HCTTCCEEECSSCBG-GGGH----------------------------------HHHHHCTTCCEEEECBCCCC-TTCTT
T ss_pred             hCCCCcEEeccCccH-HHHH----------------------------------HHHhhhhHHHhhcccccccc-cchHH
Confidence            467788887777432 1111                                  11224678888888764111 00011


Q ss_pred             CCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689          243 LPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       243 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  322 (595)
                      .+..+ ..+++|+.|+++++. ...+ + ..+..+++|++|++++|. ++.........       .+++|++|++.++ 
T Consensus       262 ~~~~l-~~~~~L~~L~l~~~~-~~~l-~-~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~-------~~~~L~~L~L~~~-  328 (592)
T 3ogk_B          262 KYMNL-VFPRKLCRLGLSYMG-PNEM-P-ILFPFAAQIRKLDLLYAL-LETEDHCTLIQ-------KCPNLEVLETRNV-  328 (592)
T ss_dssp             SSSCC-CCCTTCCEEEETTCC-TTTG-G-GGGGGGGGCCEEEETTCC-CCHHHHHHHHT-------TCTTCCEEEEEGG-
T ss_pred             HHHHh-hccccccccCccccc-hhHH-H-HHHhhcCCCcEEecCCCc-CCHHHHHHHHH-------hCcCCCEEeccCc-
Confidence            12222 467889999888642 2222 2 245788899999999987 54332211111       2889999999842 


Q ss_pred             CcccccCCCccccCcccceeeecC----------CCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEec
Q 036689          323 ELKCLYPGMHTSEWPALKLLDVSA----------CDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGL  392 (595)
Q Consensus       323 ~l~~~~~~~~~~~~~~L~~L~l~~----------c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l  392 (595)
                       +.+.........+++|++|++.+          |..++....                      ..+...+++|++|++
T Consensus       329 -~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~----------------------~~l~~~~~~L~~L~l  385 (592)
T 3ogk_B          329 -IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL----------------------IALAQGCQELEYMAV  385 (592)
T ss_dssp             -GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH----------------------HHHHHHCTTCSEEEE
T ss_pred             -cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH----------------------HHHHhhCccCeEEEe
Confidence             22211111122378899999995          666553211                      011346899999999


Q ss_pred             cCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCC-----CccccCCccEEeEeCCCC-CcccccchH
Q 036689          393 DGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPS-----SSVSFRNLKILEVSGCKK-LTNLVASSA  466 (595)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~-----~~~~l~~L~~L~l~~c~~-l~~~~~~~~  466 (595)
                      ..+...... .......+++|+.|++.++.      .|+.++..+..     .+..+++|+.|+++.|.+ +++.....+
T Consensus       386 ~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~  458 (592)
T 3ogk_B          386 YVSDITNES-LESIGTYLKNLCDFRLVLLD------REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI  458 (592)
T ss_dssp             EESCCCHHH-HHHHHHHCCSCCEEEEEECS------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred             ecCCccHHH-HHHHHhhCCCCcEEEEeecC------CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence            544332210 00011246789999997543      46666653211     244588999999988764 454433344


Q ss_pred             HhhcccccEEEEcCcccccch--hcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccc
Q 036689          467 AQSLVALVKMQVFGCRAMTQV--VKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNI  544 (595)
Q Consensus       467 ~~~l~~L~~L~l~~c~~l~~i--~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~  544 (595)
                      ...+++|++|++++|. ++..  +....        .+++|+.|++++|+ ++.-........+++|++|++++|+ ++.
T Consensus       459 ~~~~~~L~~L~L~~n~-l~~~~~~~~~~--------~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          459 GQYSPNVRWMLLGYVG-ESDEGLMEFSR--------GCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             HHSCTTCCEEEECSCC-SSHHHHHHHHT--------CCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred             HHhCccceEeeccCCC-CCHHHHHHHHh--------cCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence            4568999999999886 5432  11112        37899999999987 5432111111348999999999997 553


Q ss_pred             cCC--CCCCCCCcceEEeccC
Q 036689          545 FTT--GELSTPPRVDVMYRNR  563 (595)
Q Consensus       545 lp~--~~~~~~~L~~l~i~~~  563 (595)
                      -..  ....+|.+....+..+
T Consensus       528 ~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          528 TGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             TCTTGGGGCCTTEEEEEECCC
T ss_pred             HHHHHHHHhCCCcEEEEecCc
Confidence            321  1235677777766643

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.84  E-value=5e-22  Score=217.15  Aligned_cols=415  Identities=13%  Similarity=0.046  Sum_probs=249.7

Q ss_pred             ccccccEEEeccCCCCccccccccccccCC-CcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccc-
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQ-LKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQD-   97 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-   97 (595)
                      .+++|++|+|+++......+..+ ...+++ |++|+|.+|.++..   . .+......+++|++|++++| .+...... 
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l-~~~~~~~L~~L~L~~~~~~~~---~-~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~  183 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRL-AKARADDLETLKLDKCSGFTT---D-GLLSIVTHCRKIKTLLMEES-SFSEKDGKW  183 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHH-HHHHGGGCCEEEEESCEEEEH---H-HHHHHHHHCTTCSEEECTTC-EEECCCSHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHH-HHhccccCcEEECcCCCCcCH---H-HHHHHHhhCCCCCEEECccc-cccCcchhH
Confidence            68999999999985433222222 233555 99999999853321   1 11112347899999999997 44322100 


Q ss_pred             -cccccCCCCccEEEecCCCCcccc---cchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecC
Q 036689           98 -RLSVQSFNELKTIRVELCDQLSNI---FLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLG  173 (595)
Q Consensus        98 -~~~~~~l~~L~~L~L~~c~~l~~~---~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  173 (595)
                       ......+++|++|+++++ .++..   .....+.++++|++|++++|.. ..++          .....+++|++|+++
T Consensus       184 l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~----------~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          184 LHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDFEI-LELV----------GFFKAAANLEEFCGG  251 (592)
T ss_dssp             HHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGH----------HHHHHCTTCCEEEEC
T ss_pred             HHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHH----------HHHhhhhHHHhhccc
Confidence             011356899999999985 44411   1125667899999999999643 2222          234457889999887


Q ss_pred             CCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCC
Q 036689          174 SLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQN  253 (595)
Q Consensus       174 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~  253 (595)
                      ++.......                               ..+.....+++|+.|.++++....     +|..+ ..+++
T Consensus       252 ~~~~~~~~~-------------------------------~~~~~l~~~~~L~~L~l~~~~~~~-----l~~~~-~~~~~  294 (592)
T 3ogk_B          252 SLNEDIGMP-------------------------------EKYMNLVFPRKLCRLGLSYMGPNE-----MPILF-PFAAQ  294 (592)
T ss_dssp             BCCCCTTCT-------------------------------TSSSCCCCCTTCCEEEETTCCTTT-----GGGGG-GGGGG
T ss_pred             ccccccchH-------------------------------HHHHHhhccccccccCccccchhH-----HHHHH-hhcCC
Confidence            643221100                               012223457788888887652222     24443 56889


Q ss_pred             ccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecC----------CCC
Q 036689          254 LTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVG----------LPE  323 (595)
Q Consensus       254 L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~----------~~~  323 (595)
                      |++|++++|. +++......+..+++|++|++.++  +..........       .+++|++|++.+          |..
T Consensus       295 L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~-------~~~~L~~L~L~~g~~~~~~~~~~~~  364 (592)
T 3ogk_B          295 IRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQ-------YCKQLKRLRIERGADEQGMEDEEGL  364 (592)
T ss_dssp             CCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHH-------HCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred             CcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHH-------hCCCCCEEEeecCccccccccccCc
Confidence            9999999886 554333345688999999999844  32221111111       278999999995          666


Q ss_pred             cccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCC---CCeec
Q 036689          324 LKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGK---DIRMI  400 (595)
Q Consensus       324 l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~---~~~~~  400 (595)
                      +...........+++|++|.+ .|..++.....                      .+...+++|++|+++++   ..++.
T Consensus       365 ~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~----------------------~l~~~~~~L~~L~l~~~~~~n~l~~  421 (592)
T 3ogk_B          365 VSQRGLIALAQGCQELEYMAV-YVSDITNESLE----------------------SIGTYLKNLCDFRLVLLDREERITD  421 (592)
T ss_dssp             CCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHH----------------------HHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred             cCHHHHHHHHhhCccCeEEEe-ecCCccHHHHH----------------------HHHhhCCCCcEEEEeecCCCccccC
Confidence            654322111223789999999 45555432110                      11234889999999753   33321


Q ss_pred             cCC----CCCcccccCceeEEeeccccccccccCccccccCCCCc-cccCCccEEeEeCCCCCcccccchHHhhcccccE
Q 036689          401 WHG----DFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSS-VSFRNLKILEVSGCKKLTNLVASSAAQSLVALVK  475 (595)
Q Consensus       401 ~~~----~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  475 (595)
                      .+.    ......+++|+.|++..+.        ..+.......+ ..+++|+.|++++|+ +++.....++..+++|++
T Consensus       422 ~p~~~~~~~~~~~~~~L~~L~L~~~~--------~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~  492 (592)
T 3ogk_B          422 LPLDNGVRSLLIGCKKLRRFAFYLRQ--------GGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQK  492 (592)
T ss_dssp             CCCHHHHHHHHHHCTTCCEEEEECCG--------GGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCE
T ss_pred             chHHHHHHHHHHhCCCCCEEEEecCC--------CCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCe
Confidence            100    0012357889999995322        11222111122 237899999999864 665333456678999999


Q ss_pred             EEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCC
Q 036689          476 MQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGC  539 (595)
Q Consensus       476 L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C  539 (595)
                      |++++|. ++.......      ...+++|+.|++++|+ ++..........+|.+....+...
T Consensus       493 L~l~~n~-l~~~~~~~~------~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          493 LEMRGCC-FSERAIAAA------VTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EEEESCC-CBHHHHHHH------HHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             eeccCCC-CcHHHHHHH------HHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence            9999998 543211111      0138999999999986 665433333345788877777653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.82  E-value=1.2e-21  Score=214.14  Aligned_cols=147  Identities=11%  Similarity=0.063  Sum_probs=83.3

Q ss_pred             ccccccEEEeccCCCCcccccc-------------ccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEecc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFD-------------LDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLY   86 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~-------------~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~   86 (595)
                      .+++|+.|++.++....+....             .....+++|++|+|++| .++.....    .....+++|++|++.
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~----~l~~~~~~L~~L~L~  138 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLE----LIAKSFKNFKVLVLS  138 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHH----HHHHHCTTCCEEEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHH----HHHHhCCCCcEEeCC
Confidence            6788888888887654332210             11256788888888887 34321100    011257888888888


Q ss_pred             CccCccccccccccccCCCCccEEEecCCCCcccccc---hhhhhcCCCCcEEEEcccCCcceeecccCccccccccccc
Q 036689           87 NLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL---LSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIE  163 (595)
Q Consensus        87 ~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~  163 (595)
                      +|..+..... +.....+++|++|++++|. +++...   ......+++|++|++++|.  ..+..     .....-...
T Consensus       139 ~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~-----~~l~~l~~~  209 (594)
T 2p1m_B          139 SCEGFSTDGL-AAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSF-----SALERLVTR  209 (594)
T ss_dssp             SCEEEEHHHH-HHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCH-----HHHHHHHHH
T ss_pred             CcCCCCHHHH-HHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCH-----HHHHHHHHh
Confidence            8755544210 1113467888888888875 443221   1233467788888888765  11110     000011223


Q ss_pred             ccccceEecCCCCCccc
Q 036689          164 FGQLSTLCLGSLPELTS  180 (595)
Q Consensus       164 ~~~L~~L~l~~~~~l~~  180 (595)
                      +++|++|++++|..+..
T Consensus       210 ~~~L~~L~L~~~~~~~~  226 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLEK  226 (594)
T ss_dssp             CTTCCEEECCTTSCHHH
T ss_pred             CCCCcEEecCCCCcHHH
Confidence            67888888887755544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.81  E-value=2.6e-21  Score=211.56  Aligned_cols=188  Identities=15%  Similarity=0.233  Sum_probs=115.2

Q ss_pred             ccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEec-CCCCCCC--------cCCcCCCccEEeccCccCcccc
Q 036689           24 VEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIV-DSKERVP--------LDDAFPILESLNLYNLIKLERI   94 (595)
Q Consensus        24 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~-~~~~~~~--------~~~~~~~L~~L~l~~~~~l~~~   94 (595)
                      .+.+++.++....   +.....++++|++|.+.+++.+..+. ....|..        ....+++|++|+++++ .+...
T Consensus        45 ~~~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~  120 (594)
T 2p1m_B           45 RRKVFIGNCYAVS---PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDD  120 (594)
T ss_dssp             CCEEEESSTTSSC---HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHH
T ss_pred             ceEEeeccccccC---HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHH
Confidence            3466666654421   22223789999999999987554221 0112211        1246789999999997 34432


Q ss_pred             cccccccc-CCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecC
Q 036689           95 CQDRLSVQ-SFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLG  173 (595)
Q Consensus        95 ~~~~~~~~-~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  173 (595)
                      ...  .+. .+++|++|++++|..++.......+.++++|++|++++|. +.....     .....-...+++|++|+++
T Consensus       121 ~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~-----~~l~~~~~~~~~L~~L~l~  192 (594)
T 2p1m_B          121 CLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSG-----HWLSHFPDTYTSLVSLNIS  192 (594)
T ss_dssp             HHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCG-----GGGGGSCTTCCCCCEEECT
T ss_pred             HHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcch-----HHHHHHhhcCCcCcEEEec
Confidence            111  132 5899999999999777663333566689999999999976 332110     0111122256789999998


Q ss_pred             CCC-CccccccccccccccccccccccCccccccccccCCCccccc-cccCCccceeecccc-cceeecccCCCcccccc
Q 036689          174 SLP-ELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNE-KVALSNLEVLEMNKV-NIEKIWHNQLPVAMFLC  250 (595)
Q Consensus       174 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~  250 (595)
                      ++. .+..-                                 .+.. ...+++|++|++++| .+..+     +..+ ..
T Consensus       193 ~~~~~~~~~---------------------------------~l~~l~~~~~~L~~L~L~~~~~~~~l-----~~~~-~~  233 (594)
T 2p1m_B          193 CLASEVSFS---------------------------------ALERLVTRCPNLKSLKLNRAVPLEKL-----ATLL-QR  233 (594)
T ss_dssp             TCCSCCCHH---------------------------------HHHHHHHHCTTCCEEECCTTSCHHHH-----HHHH-HH
T ss_pred             ccCCcCCHH---------------------------------HHHHHHHhCCCCcEEecCCCCcHHHH-----HHHH-hc
Confidence            875 11110                                 0111 123688999999988 55543     4444 56


Q ss_pred             CCCccEEEEecC
Q 036689          251 FQNLTRLILRKC  262 (595)
Q Consensus       251 l~~L~~L~L~~c  262 (595)
                      +++|+.|++..|
T Consensus       234 ~~~L~~L~l~~~  245 (594)
T 2p1m_B          234 APQLEELGTGGY  245 (594)
T ss_dssp             CTTCSEEECSBC
T ss_pred             CCcceEcccccc
Confidence            889999987655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=1.1e-17  Score=168.84  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=27.9

Q ss_pred             CCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcc
Q 036689           78 PILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN  140 (595)
Q Consensus        78 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~  140 (595)
                      ++|++|+++++ .+..+..  ..+..+++|++|++++| .++.+++ ..++++++|++|++++
T Consensus        54 ~~l~~L~l~~n-~i~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           54 PDTTLLDLQNN-DISELRK--DDFKGLQHLYALVLVNN-KISKIHE-KAFSPLRKLQKLYISK  111 (332)
T ss_dssp             TTCCEEECCSS-CCCEECT--TTTTTCTTCCEEECCSS-CCCEECG-GGSTTCTTCCEEECCS
T ss_pred             CCCeEEECCCC-cCCccCH--hHhhCCCCCcEEECCCC-ccCccCH-hHhhCcCCCCEEECCC
Confidence            45555555553 3443321  12445555555555553 3444322 3445555555555555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=7e-18  Score=170.23  Aligned_cols=247  Identities=17%  Similarity=0.202  Sum_probs=137.7

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  300 (595)
                      .+++|++|++++|.++.+.    |..+ ..+++|++|+++++ .++.++..    ..++|++|+++++. ++.++...+.
T Consensus        76 ~l~~L~~L~L~~n~l~~~~----~~~~-~~l~~L~~L~L~~n-~l~~l~~~----~~~~L~~L~l~~n~-i~~~~~~~~~  144 (332)
T 2ft3_A           76 GLQHLYALVLVNNKISKIH----EKAF-SPLRKLQKLYISKN-HLVEIPPN----LPSSLVELRIHDNR-IRKVPKGVFS  144 (332)
T ss_dssp             TCTTCCEEECCSSCCCEEC----GGGS-TTCTTCCEEECCSS-CCCSCCSS----CCTTCCEEECCSSC-CCCCCSGGGS
T ss_pred             CCCCCcEEECCCCccCccC----HhHh-hCcCCCCEEECCCC-cCCccCcc----ccccCCEEECCCCc-cCccCHhHhC
Confidence            3566777777777666552    2222 45677777777764 45544331    12667777777776 6655542222


Q ss_pred             CCCCCCCcCCCcccEEeecCCCCccc--ccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCC
Q 036689          301 DDQVPPNFVFPQVTILRLVGLPELKC--LYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLF  378 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~~l~~--~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~  378 (595)
                      .        +++|++|+++++. +..  ....... .+ +|+.|+++++. ++.+|.                       
T Consensus       145 ~--------l~~L~~L~l~~n~-l~~~~~~~~~~~-~l-~L~~L~l~~n~-l~~l~~-----------------------  189 (332)
T 2ft3_A          145 G--------LRNMNCIEMGGNP-LENSGFEPGAFD-GL-KLNYLRISEAK-LTGIPK-----------------------  189 (332)
T ss_dssp             S--------CSSCCEEECCSCC-CBGGGSCTTSSC-SC-CCSCCBCCSSB-CSSCCS-----------------------
T ss_pred             C--------CccCCEEECCCCc-cccCCCCccccc-CC-ccCEEECcCCC-CCccCc-----------------------
Confidence            2        6677777777643 221  1111111 12 56666666553 333443                       


Q ss_pred             CcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCC
Q 036689          379 LPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKL  458 (595)
Q Consensus       379 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l  458 (595)
                         ...++|++|++++|..                                    ..+++..+..+++|+.|++++ +.+
T Consensus       190 ---~~~~~L~~L~l~~n~i------------------------------------~~~~~~~l~~l~~L~~L~L~~-N~l  229 (332)
T 2ft3_A          190 ---DLPETLNELHLDHNKI------------------------------------QAIELEDLLRYSKLYRLGLGH-NQI  229 (332)
T ss_dssp             ---SSCSSCSCCBCCSSCC------------------------------------CCCCTTSSTTCTTCSCCBCCS-SCC
T ss_pred             ---cccCCCCEEECCCCcC------------------------------------CccCHHHhcCCCCCCEEECCC-CcC
Confidence               1225566666666543                                    333333555667777777776 455


Q ss_pred             cccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccc-----cCCCccE
Q 036689          459 TNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIF-----KFPSLEV  533 (595)
Q Consensus       459 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~-----~~~~L~~  533 (595)
                      +.+++ ..+..+++|++|++++|. ++.++.....        +++|+.|+++++ .++.++...+..     ..+.|+.
T Consensus       230 ~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~~l~~--------l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~  298 (332)
T 2ft3_A          230 RMIEN-GSLSFLPTLRELHLDNNK-LSRVPAGLPD--------LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNG  298 (332)
T ss_dssp             CCCCT-TGGGGCTTCCEEECCSSC-CCBCCTTGGG--------CTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSE
T ss_pred             CcCCh-hHhhCCCCCCEEECCCCc-CeecChhhhc--------CccCCEEECCCC-CCCccChhHccccccccccccccc
Confidence            55533 334667777777777765 6566544332        677777777774 566665443221     1466888


Q ss_pred             EEEeCCCCc--cccCCCCCCCCCcceEEeccCC
Q 036689          534 LFVVGCPKM--NIFTTGELSTPPRVDVMYRNRG  564 (595)
Q Consensus       534 L~l~~C~~l--~~lp~~~~~~~~L~~l~i~~~~  564 (595)
                      |++.++|..  ...|..+..+++|+.++++++.
T Consensus       299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             EECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             eEeecCcccccccCcccccccchhhhhhccccc
Confidence            888887643  2234455668888888887653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=3.6e-17  Score=164.85  Aligned_cols=78  Identities=22%  Similarity=0.239  Sum_probs=40.1

Q ss_pred             CCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhh
Q 036689           49 QLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAK  128 (595)
Q Consensus        49 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~  128 (595)
                      ++++++++++ +++.++.        ...+++++|+++++ +++.+...  .+..+++|++|++++| .++.+.+ ..++
T Consensus        32 ~l~~l~~~~~-~l~~lp~--------~~~~~l~~L~L~~n-~i~~~~~~--~~~~l~~L~~L~L~~n-~l~~~~~-~~~~   97 (330)
T 1xku_A           32 HLRVVQCSDL-GLEKVPK--------DLPPDTALLDLQNN-KITEIKDG--DFKNLKNLHTLILINN-KISKISP-GAFA   97 (330)
T ss_dssp             ETTEEECTTS-CCCSCCC--------SCCTTCCEEECCSS-CCCCBCTT--TTTTCTTCCEEECCSS-CCCCBCT-TTTT
T ss_pred             CCeEEEecCC-CccccCc--------cCCCCCeEEECCCC-cCCEeChh--hhccCCCCCEEECCCC-cCCeeCH-HHhc
Confidence            5566666555 3443321        12245666666664 45444221  2455666666666663 4444422 4455


Q ss_pred             cCCCCcEEEEcc
Q 036689          129 CLPRLERIAVIN  140 (595)
Q Consensus       129 ~l~~L~~L~l~~  140 (595)
                      ++++|++|++++
T Consensus        98 ~l~~L~~L~Ls~  109 (330)
T 1xku_A           98 PLVKLERLYLSK  109 (330)
T ss_dssp             TCTTCCEEECCS
T ss_pred             CCCCCCEEECCC
Confidence            566666666665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.77  E-value=5.8e-17  Score=163.30  Aligned_cols=273  Identities=14%  Similarity=0.084  Sum_probs=144.6

Q ss_pred             cccccEEEeccCCCCccccc-cccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           21 IKDVEYLCLDKSQDVKNVLF-DLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        21 l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+++++|+++++... .+++ .+  +.+++|++|++++| .++.+.+.     .+..+++|++|+++++ .++.+..   
T Consensus        51 ~~~l~~L~L~~n~i~-~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~-----~~~~l~~L~~L~Ls~n-~l~~l~~---  117 (330)
T 1xku_A           51 PPDTALLDLQNNKIT-EIKDGDF--KNLKNLHTLILINN-KISKISPG-----AFAPLVKLERLYLSKN-QLKELPE---  117 (330)
T ss_dssp             CTTCCEEECCSSCCC-CBCTTTT--TTCTTCCEEECCSS-CCCCBCTT-----TTTTCTTCCEEECCSS-CCSBCCS---
T ss_pred             CCCCeEEECCCCcCC-EeChhhh--ccCCCCCEEECCCC-cCCeeCHH-----HhcCCCCCCEEECCCC-cCCccCh---
Confidence            356667777666542 3322 23  56677777777666 45544332     3455667777777764 4554421   


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT  179 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  179 (595)
                        ..+++|++|++++| .++..++ ..+.++++|++|++++|..- ...       ........+++|+.|+++++. +.
T Consensus       118 --~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~-------~~~~~~~~l~~L~~L~l~~n~-l~  184 (330)
T 1xku_A          118 --KMPKTLQELRVHEN-EITKVRK-SVFNGLNQMIVVELGTNPLK-SSG-------IENGAFQGMKKLSYIRIADTN-IT  184 (330)
T ss_dssp             --SCCTTCCEEECCSS-CCCBBCH-HHHTTCTTCCEEECCSSCCC-GGG-------BCTTGGGGCTTCCEEECCSSC-CC
T ss_pred             --hhcccccEEECCCC-cccccCH-hHhcCCccccEEECCCCcCC-ccC-------cChhhccCCCCcCEEECCCCc-cc
Confidence              22366777777764 4554443 45666777777777664321 100       000123345666666666543 22


Q ss_pred             ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689          180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL  259 (595)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L  259 (595)
                      .++..                                    ..++|++|++++|.++.+.    |..+ ..+++|+.|++
T Consensus       185 ~l~~~------------------------------------~~~~L~~L~l~~n~l~~~~----~~~~-~~l~~L~~L~L  223 (330)
T 1xku_A          185 TIPQG------------------------------------LPPSLTELHLDGNKITKVD----AASL-KGLNNLAKLGL  223 (330)
T ss_dssp             SCCSS------------------------------------CCTTCSEEECTTSCCCEEC----TGGG-TTCTTCCEEEC
T ss_pred             cCCcc------------------------------------ccccCCEEECCCCcCCccC----HHHh-cCCCCCCEEEC
Confidence            21110                                    1256777777777666552    2222 45677777777


Q ss_pred             ecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCc-----cc
Q 036689          260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMH-----TS  334 (595)
Q Consensus       260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~-----~~  334 (595)
                      +++ .++.+.+ ..+..+++|++|++++|. ++.++. ..        ..+++|++|+++++. +..++....     ..
T Consensus       224 s~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~-~l--------~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~  290 (330)
T 1xku_A          224 SFN-SISAVDN-GSLANTPHLRELHLNNNK-LVKVPG-GL--------ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNT  290 (330)
T ss_dssp             CSS-CCCEECT-TTGGGSTTCCEEECCSSC-CSSCCT-TT--------TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCT
T ss_pred             CCC-cCceeCh-hhccCCCCCCEEECCCCc-CccCCh-hh--------ccCCCcCEEECCCCc-CCccChhhcCCccccc
Confidence            764 4555433 234667777777777776 665543 11        126777777777743 444433221     11


Q ss_pred             cCcccceeeecCCCCcc-ccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCC
Q 036689          335 EWPALKLLDVSACDQVT-VFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKD  396 (595)
Q Consensus       335 ~~~~L~~L~l~~c~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~  396 (595)
                      ..+.|+.|++.+++... .+++                       ..+..+++++.+++++|+
T Consensus       291 ~~~~l~~l~l~~N~~~~~~i~~-----------------------~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          291 KKASYSGVSLFSNPVQYWEIQP-----------------------STFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             TSCCCSEEECCSSSSCGGGSCG-----------------------GGGTTCCCGGGEEC----
T ss_pred             ccccccceEeecCcccccccCc-----------------------cccccccceeEEEecccC
Confidence            24566777777665321 1222                       224567778888887763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.76  E-value=1.8e-17  Score=166.61  Aligned_cols=234  Identities=18%  Similarity=0.209  Sum_probs=173.4

Q ss_pred             ccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchh
Q 036689           46 GFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLS  125 (595)
Q Consensus        46 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~  125 (595)
                      ..+++++|+|+++ .++.+++      ....+++|++|+++++ .+..+   +..++.+++|++|++++| .++.+|  .
T Consensus        79 ~~~~l~~L~L~~n-~l~~lp~------~l~~l~~L~~L~L~~n-~l~~l---p~~~~~l~~L~~L~Ls~n-~l~~lp--~  144 (328)
T 4fcg_A           79 TQPGRVALELRSV-PLPQFPD------QAFRLSHLQHMTIDAA-GLMEL---PDTMQQFAGLETLTLARN-PLRALP--A  144 (328)
T ss_dssp             TSTTCCEEEEESS-CCSSCCS------CGGGGTTCSEEEEESS-CCCCC---CSCGGGGTTCSEEEEESC-CCCCCC--G
T ss_pred             cccceeEEEccCC-CchhcCh------hhhhCCCCCEEECCCC-Cccch---hHHHhccCCCCEEECCCC-ccccCc--H
Confidence            3478888999887 6665532      3455888999999885 66655   344788899999999985 666665  5


Q ss_pred             hhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccc
Q 036689          126 AAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSL  205 (595)
Q Consensus       126 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (595)
                      .+.++++|++|++++|+.+..++..                +....+                                 
T Consensus       145 ~l~~l~~L~~L~L~~n~~~~~~p~~----------------~~~~~~---------------------------------  175 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPELTELPEP----------------LASTDA---------------------------------  175 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTCCCCCSC----------------SEEEC----------------------------------
T ss_pred             HHhcCcCCCEEECCCCCCccccChh----------------Hhhccc---------------------------------
Confidence            6888999999999998877766532                111100                                 


Q ss_pred             cccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEe
Q 036689          206 EDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEI  285 (595)
Q Consensus       206 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l  285 (595)
                                ......+++|++|++++|.++.+     |.++ ..+++|++|+++++ .++.+++  .++.+++|++|++
T Consensus       176 ----------~~~~~~l~~L~~L~L~~n~l~~l-----p~~l-~~l~~L~~L~L~~N-~l~~l~~--~l~~l~~L~~L~L  236 (328)
T 4fcg_A          176 ----------SGEHQGLVNLQSLRLEWTGIRSL-----PASI-ANLQNLKSLKIRNS-PLSALGP--AIHHLPKLEELDL  236 (328)
T ss_dssp             ----------CCCEEESTTCCEEEEEEECCCCC-----CGGG-GGCTTCCEEEEESS-CCCCCCG--GGGGCTTCCEEEC
T ss_pred             ----------hhhhccCCCCCEEECcCCCcCcc-----hHhh-cCCCCCCEEEccCC-CCCcCch--hhccCCCCCEEEC
Confidence                      01112478899999999988755     7665 68999999999986 5666544  3689999999999


Q ss_pred             ecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCC
Q 036689          286 RYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSE  365 (595)
Q Consensus       286 ~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~  365 (595)
                      ++|.....++. .+.        .+++|++|++++|.....++...  ..+++|+.|++++|+.++.+|..         
T Consensus       237 s~n~~~~~~p~-~~~--------~l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~L~~n~~~~~iP~~---------  296 (328)
T 4fcg_A          237 RGCTALRNYPP-IFG--------GRAPLKRLILKDCSNLLTLPLDI--HRLTQLEKLDLRGCVNLSRLPSL---------  296 (328)
T ss_dssp             TTCTTCCBCCC-CTT--------CCCCCCEEECTTCTTCCBCCTTG--GGCTTCCEEECTTCTTCCCCCGG---------
T ss_pred             cCCcchhhhHH-Hhc--------CCCCCCEEECCCCCchhhcchhh--hcCCCCCEEeCCCCCchhhccHH---------
Confidence            99985554433 222        28999999999998888776653  33899999999999999988873         


Q ss_pred             CCCCCCCCCCCCCCcCccCCCcceEeccCCC
Q 036689          366 EDKPDIPAQQPLFLPEKVFPNLEELGLDGKD  396 (595)
Q Consensus       366 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~  396 (595)
                                     +..+++|+.+++..+.
T Consensus       297 ---------------l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          297 ---------------IAQLPANCIILVPPHL  312 (328)
T ss_dssp             ---------------GGGSCTTCEEECCGGG
T ss_pred             ---------------HhhccCceEEeCCHHH
Confidence                           4678889999887653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.74  E-value=6.1e-20  Score=194.15  Aligned_cols=116  Identities=15%  Similarity=0.157  Sum_probs=68.1

Q ss_pred             cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689           21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS  100 (595)
Q Consensus        21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  100 (595)
                      ++++++|+++++..... ........+++|++|++++| .++..... ........+++|++|+++++ .+....... -
T Consensus         2 ~~~l~~L~Ls~~~l~~~-~~~~~~~~~~~L~~L~L~~~-~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~-l   76 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDC-GLTEARCK-DISSALRVNPALAELNLRSN-ELGDVGVHC-V   76 (461)
T ss_dssp             CEEEEEEEEESCCCCHH-HHHHHHHHHTTCSEEEEESS-CCCHHHHH-HHHHHHHTCTTCCEEECTTC-CCHHHHHHH-H
T ss_pred             CccceehhhhhcccCch-hHHHHHhhcCCccEEEccCC-CCCHHHHH-HHHHHHHhCCCcCEEeCCCC-cCChHHHHH-H
Confidence            46788888887775332 22211367888999999888 45421000 00012345688888888885 454421100 0


Q ss_pred             ccCCC----CccEEEecCCCCcccc---cchhhhhcCCCCcEEEEcccC
Q 036689          101 VQSFN----ELKTIRVELCDQLSNI---FLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       101 ~~~l~----~L~~L~L~~c~~l~~~---~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      ...++    +|++|++++| .+++.   .....+..+++|++|++++|.
T Consensus        77 ~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~  124 (461)
T 1z7x_W           77 LQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  124 (461)
T ss_dssp             HHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence            12233    6888888886 45531   112566778888888888854

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.74  E-value=3.3e-17  Score=164.72  Aligned_cols=109  Identities=24%  Similarity=0.304  Sum_probs=91.0

Q ss_pred             CccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccccccc
Q 036689          440 SSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSF  519 (595)
Q Consensus       440 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l  519 (595)
                      .+..+++|+.|+++++ .++.+++  .++.+++|++|++++|.....++.....        +++|+.|++++|+.+..+
T Consensus       201 ~l~~l~~L~~L~L~~N-~l~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p~~~~~--------l~~L~~L~L~~n~~~~~~  269 (328)
T 4fcg_A          201 SIANLQNLKSLKIRNS-PLSALGP--AIHHLPKLEELDLRGCTALRNYPPIFGG--------RAPLKRLILKDCSNLLTL  269 (328)
T ss_dssp             GGGGCTTCCEEEEESS-CCCCCCG--GGGGCTTCCEEECTTCTTCCBCCCCTTC--------CCCCCEEECTTCTTCCBC
T ss_pred             hhcCCCCCCEEEccCC-CCCcCch--hhccCCCCCEEECcCCcchhhhHHHhcC--------CCCCCEEECCCCCchhhc
Confidence            5667889999999984 5666643  3578899999999998866666554444        899999999999888888


Q ss_pred             ccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEec
Q 036689          520 CSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYR  561 (595)
Q Consensus       520 ~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~  561 (595)
                      |...  ..+++|++|++++|+.++.+|.++.++++|+.+.+.
T Consensus       270 p~~~--~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          270 PLDI--HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CTTG--GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             chhh--hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            8776  359999999999999999999999999999999987

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=1.8e-16  Score=166.25  Aligned_cols=247  Identities=20%  Similarity=0.159  Sum_probs=164.2

Q ss_pred             ccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccC
Q 036689           24 VEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQS  103 (595)
Q Consensus        24 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  103 (595)
                      .+.++..+... ..++..+    .+++++|+|+++ .++.+.+.     .+..+++|++|+++++ .+..+..  ..+..
T Consensus        45 ~~~v~c~~~~l-~~iP~~~----~~~l~~L~L~~n-~i~~~~~~-----~~~~l~~L~~L~Ls~n-~i~~i~~--~~~~~  110 (440)
T 3zyj_A           45 FSKVICVRKNL-REVPDGI----STNTRLLNLHEN-QIQIIKVN-----SFKHLRHLEILQLSRN-HIRTIEI--GAFNG  110 (440)
T ss_dssp             SCEEECCSCCC-SSCCSCC----CTTCSEEECCSC-CCCEECTT-----TTSSCSSCCEEECCSS-CCCEECG--GGGTT
T ss_pred             CCEEEeCCCCc-CcCCCCC----CCCCcEEEccCC-cCCeeCHH-----HhhCCCCCCEEECCCC-cCCccCh--hhccC
Confidence            44555444333 4444333    367888888887 67777443     4667788888888885 5665532  23667


Q ss_pred             CCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcccccc
Q 036689          104 FNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCC  183 (595)
Q Consensus       104 l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  183 (595)
                      +++|++|++++| .++.+++ ..+..+++|++|++++| .+..++..         ....+++|+.|+++++..+..++.
T Consensus       111 l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~---------~~~~l~~L~~L~l~~~~~l~~i~~  178 (440)
T 3zyj_A          111 LANLNTLELFDN-RLTTIPN-GAFVYLSKLKELWLRNN-PIESIPSY---------AFNRIPSLRRLDLGELKRLSYISE  178 (440)
T ss_dssp             CSSCCEEECCSS-CCSSCCT-TTSCSCSSCCEEECCSC-CCCEECTT---------TTTTCTTCCEEECCCCTTCCEECT
T ss_pred             CccCCEEECCCC-cCCeeCH-hHhhccccCceeeCCCC-cccccCHH---------HhhhCcccCEeCCCCCCCcceeCc
Confidence            888888888884 6676654 56777888888888874 45554421         233567888888887776665432


Q ss_pred             ccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCC
Q 036689          184 EVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCP  263 (595)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~  263 (595)
                      .                              .|   ..+++|++|++++|+++.+     |..  ..+++|+.|+++++ 
T Consensus       179 ~------------------------------~~---~~l~~L~~L~L~~n~l~~~-----~~~--~~l~~L~~L~Ls~N-  217 (440)
T 3zyj_A          179 G------------------------------AF---EGLSNLRYLNLAMCNLREI-----PNL--TPLIKLDELDLSGN-  217 (440)
T ss_dssp             T------------------------------TT---TTCSSCCEEECTTSCCSSC-----CCC--TTCSSCCEEECTTS-
T ss_pred             c------------------------------hh---hcccccCeecCCCCcCccc-----ccc--CCCcccCEEECCCC-
Confidence            1                              11   2477888888888877765     432  46788888888876 


Q ss_pred             CCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceee
Q 036689          264 KLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLD  343 (595)
Q Consensus       264 ~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~  343 (595)
                      .++.+.+. .+..+++|++|+++++. ++.++...+.+        +++|+.|+|+++ .+..++... ...+++|+.|+
T Consensus       218 ~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~  285 (440)
T 3zyj_A          218 HLSAIRPG-SFQGLMHLQKLWMIQSQ-IQVIERNAFDN--------LQSLVEINLAHN-NLTLLPHDL-FTPLHHLERIH  285 (440)
T ss_dssp             CCCEECTT-TTTTCTTCCEEECTTCC-CCEECTTSSTT--------CTTCCEEECTTS-CCCCCCTTT-TSSCTTCCEEE
T ss_pred             ccCccChh-hhccCccCCEEECCCCc-eeEEChhhhcC--------CCCCCEEECCCC-CCCccChhH-hccccCCCEEE
Confidence            56665443 45788888888888887 77776543333        788888888885 455555432 12368888888


Q ss_pred             ecCCCC
Q 036689          344 VSACDQ  349 (595)
Q Consensus       344 l~~c~~  349 (595)
                      +.+++.
T Consensus       286 L~~Np~  291 (440)
T 3zyj_A          286 LHHNPW  291 (440)
T ss_dssp             CCSSCE
T ss_pred             cCCCCc
Confidence            887653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.72  E-value=2.5e-16  Score=165.86  Aligned_cols=228  Identities=19%  Similarity=0.143  Sum_probs=151.8

Q ss_pred             cCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhh
Q 036689           47 FLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSA  126 (595)
Q Consensus        47 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~  126 (595)
                      .+++++|+|+++ .++.+.+.     .+..+++|++|+++++ .+..+..  ..+..+++|++|+++++ .++.+++ ..
T Consensus        74 ~~~l~~L~L~~n-~i~~~~~~-----~~~~l~~L~~L~Ls~n-~i~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~-~~  142 (452)
T 3zyi_A           74 PSNTRYLNLMEN-NIQMIQAD-----TFRHLHHLEVLQLGRN-SIRQIEV--GAFNGLASLNTLELFDN-WLTVIPS-GA  142 (452)
T ss_dssp             CTTCSEEECCSS-CCCEECTT-----TTTTCTTCCEEECCSS-CCCEECT--TTTTTCTTCCEEECCSS-CCSBCCT-TT
T ss_pred             CCCccEEECcCC-cCceECHH-----HcCCCCCCCEEECCCC-ccCCcCh--hhccCcccCCEEECCCC-cCCccCh-hh
Confidence            367888888877 67766444     4567788888888875 6665532  23667788888888884 5666554 55


Q ss_pred             hhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccccc
Q 036689          127 AKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLE  206 (595)
Q Consensus       127 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (595)
                      +..+++|++|++++| .+..++..         ....+++|+.|+++++..+..++..                      
T Consensus       143 ~~~l~~L~~L~L~~N-~l~~~~~~---------~~~~l~~L~~L~l~~~~~l~~i~~~----------------------  190 (452)
T 3zyi_A          143 FEYLSKLRELWLRNN-PIESIPSY---------AFNRVPSLMRLDLGELKKLEYISEG----------------------  190 (452)
T ss_dssp             SSSCTTCCEEECCSC-CCCEECTT---------TTTTCTTCCEEECCCCTTCCEECTT----------------------
T ss_pred             hcccCCCCEEECCCC-CcceeCHh---------HHhcCCcccEEeCCCCCCccccChh----------------------
Confidence            677888888888774 45554421         2335677888888877766654421                      


Q ss_pred             ccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEee
Q 036689          207 DKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIR  286 (595)
Q Consensus       207 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~  286 (595)
                              .|   ..+++|+.|++++|+++.+     |..  ..+++|+.|+++++ .++.+.+. .+.++++|++|+++
T Consensus       191 --------~~---~~l~~L~~L~L~~n~l~~~-----~~~--~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~  250 (452)
T 3zyi_A          191 --------AF---EGLFNLKYLNLGMCNIKDM-----PNL--TPLVGLEELEMSGN-HFPEIRPG-SFHGLSSLKKLWVM  250 (452)
T ss_dssp             --------TT---TTCTTCCEEECTTSCCSSC-----CCC--TTCTTCCEEECTTS-CCSEECGG-GGTTCTTCCEEECT
T ss_pred             --------hc---cCCCCCCEEECCCCccccc-----ccc--cccccccEEECcCC-cCcccCcc-cccCccCCCEEEeC
Confidence                    11   2467888888888877665     432  46788888888875 56655443 45788888888888


Q ss_pred             cccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCC
Q 036689          287 YCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACD  348 (595)
Q Consensus       287 ~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~  348 (595)
                      +|. ++.+....+.+        +++|+.|+++++ .+..++... ...+++|+.|++.+++
T Consensus       251 ~n~-l~~~~~~~~~~--------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          251 NSQ-VSLIERNAFDG--------LASLVELNLAHN-NLSSLPHDL-FTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TSC-CCEECTTTTTT--------CTTCCEEECCSS-CCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred             CCc-CceECHHHhcC--------CCCCCEEECCCC-cCCccChHH-hccccCCCEEEccCCC
Confidence            887 77776533332        788888888885 455554432 1236788888888765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.72  E-value=1.2e-16  Score=168.19  Aligned_cols=229  Identities=18%  Similarity=0.168  Sum_probs=176.7

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      ..+++++|+|+++......+..+  +.+++|++|+|++| .++.+.+.     .+..+++|++|+++++ .++.+...  
T Consensus        73 ~~~~l~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~n-~i~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~~--  141 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQADTF--RHLHHLEVLQLGRN-SIRQIEVG-----AFNGLASLNTLELFDN-WLTVIPSG--  141 (452)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTT--TTCTTCCEEECCSS-CCCEECTT-----TTTTCTTCCEEECCSS-CCSBCCTT--
T ss_pred             CCCCccEEECcCCcCceECHHHc--CCCCCCCEEECCCC-ccCCcChh-----hccCcccCCEEECCCC-cCCccChh--
Confidence            34789999999998743333334  79999999999999 78888554     5678999999999996 77766332  


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT  179 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  179 (595)
                      .+..+++|++|+++++ .++.++. ..+.++++|++|++++|+.+..++..         ....+++|+.|+++++. +.
T Consensus       142 ~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---------~~~~l~~L~~L~L~~n~-l~  209 (452)
T 3zyi_A          142 AFEYLSKLRELWLRNN-PIESIPS-YAFNRVPSLMRLDLGELKKLEYISEG---------AFEGLFNLKYLNLGMCN-IK  209 (452)
T ss_dssp             TSSSCTTCCEEECCSC-CCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---------TTTTCTTCCEEECTTSC-CS
T ss_pred             hhcccCCCCEEECCCC-CcceeCH-hHHhcCCcccEEeCCCCCCccccChh---------hccCCCCCCEEECCCCc-cc
Confidence            3678999999999995 6777664 67889999999999999998887632         23457899999998763 32


Q ss_pred             ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689          180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL  259 (595)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L  259 (595)
                      .++                                   ....+++|+.|++++|.++.+.    |.. +..+++|+.|++
T Consensus       210 ~~~-----------------------------------~~~~l~~L~~L~Ls~N~l~~~~----~~~-~~~l~~L~~L~L  249 (452)
T 3zyi_A          210 DMP-----------------------------------NLTPLVGLEELEMSGNHFPEIR----PGS-FHGLSSLKKLWV  249 (452)
T ss_dssp             SCC-----------------------------------CCTTCTTCCEEECTTSCCSEEC----GGG-GTTCTTCCEEEC
T ss_pred             ccc-----------------------------------cccccccccEEECcCCcCcccC----ccc-ccCccCCCEEEe
Confidence            221                                   1235789999999999888762    222 267899999999


Q ss_pred             ecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689          260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  322 (595)
                      +++ .++.+.+. .+..+++|++|++++|. ++.++...+..        +++|+.|++++++
T Consensus       250 ~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~--------l~~L~~L~L~~Np  301 (452)
T 3zyi_A          250 MNS-QVSLIERN-AFDGLASLVELNLAHNN-LSSLPHDLFTP--------LRYLVELHLHHNP  301 (452)
T ss_dssp             TTS-CCCEECTT-TTTTCTTCCEEECCSSC-CSCCCTTSSTT--------CTTCCEEECCSSC
T ss_pred             CCC-cCceECHH-HhcCCCCCCEEECCCCc-CCccChHHhcc--------ccCCCEEEccCCC
Confidence            986 56665443 46889999999999997 88877633322        8999999999965

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.71  E-value=5e-16  Score=168.28  Aligned_cols=36  Identities=22%  Similarity=0.126  Sum_probs=21.9

Q ss_pred             cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcc
Q 036689          444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCR  482 (595)
Q Consensus       444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  482 (595)
                      +++|+.|++++| .++.++  ..+..+++|+.|++++|+
T Consensus       260 ~~~L~~L~Ls~N-~L~~lp--~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          260 PSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CTTCCEEECCSS-CCCSCC--GGGGGSCTTCEEECCSCC
T ss_pred             cccCcEEeCCCC-CCCcCC--HHHhhccccCEEEecCCC
Confidence            456677777663 555542  224566777777776665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.71  E-value=4.4e-17  Score=165.84  Aligned_cols=280  Identities=17%  Similarity=0.126  Sum_probs=190.0

Q ss_pred             cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689           21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS  100 (595)
Q Consensus        21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  100 (595)
                      ++.....+.+++.. +.++..+    .++|++|+++++ .++.+++.     .+..+++|++|+++++ .++.+..  ..
T Consensus        30 C~~~~~c~~~~~~l-~~iP~~~----~~~L~~L~l~~n-~i~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~--~~   95 (353)
T 2z80_A           30 CDRNGICKGSSGSL-NSIPSGL----TEAVKSLDLSNN-RITYISNS-----DLQRCVNLQALVLTSN-GINTIEE--DS   95 (353)
T ss_dssp             ECTTSEEECCSTTC-SSCCTTC----CTTCCEEECTTS-CCCEECTT-----TTTTCTTCCEEECTTS-CCCEECT--TT
T ss_pred             CCCCeEeeCCCCCc-ccccccc----cccCcEEECCCC-cCcccCHH-----HhccCCCCCEEECCCC-ccCccCH--hh
Confidence            34444455555544 4444433    468999999988 68877543     4677899999999986 6766532  23


Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS  180 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  180 (595)
                      +..+++|++|++++| .++.+++ ..++++++|++|++++| .+..++..        .....+++|+.|+++++..+..
T Consensus        96 ~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~--------~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A           96 FSSLGSLEHLDLSYN-YLSNLSS-SWFKPLSSLTFLNLLGN-PYKTLGET--------SLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             TTTCTTCCEEECCSS-CCSSCCH-HHHTTCTTCSEEECTTC-CCSSSCSS--------CSCTTCTTCCEEEEEESSSCCE
T ss_pred             cCCCCCCCEEECCCC-cCCcCCH-hHhCCCccCCEEECCCC-CCcccCch--------hhhccCCCCcEEECCCCccccc
Confidence            678899999999985 6776653 55788999999999985 44444420        1234578899999888765554


Q ss_pred             cccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEe
Q 036689          181 FCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILR  260 (595)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~  260 (595)
                      +...                                 ....+++|++|++++|.++.+.    |..+ ..+++|++|+++
T Consensus       165 ~~~~---------------------------------~~~~l~~L~~L~l~~n~l~~~~----~~~l-~~l~~L~~L~l~  206 (353)
T 2z80_A          165 IQRK---------------------------------DFAGLTFLEELEIDASDLQSYE----PKSL-KSIQNVSHLILH  206 (353)
T ss_dssp             ECTT---------------------------------TTTTCCEEEEEEEEETTCCEEC----TTTT-TTCSEEEEEEEE
T ss_pred             cCHH---------------------------------HccCCCCCCEEECCCCCcCccC----HHHH-hccccCCeecCC
Confidence            3321                                 1125789999999999887663    3333 578999999999


Q ss_pred             cCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccc-----ccCCCcccc
Q 036689          261 KCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKC-----LYPGMHTSE  335 (595)
Q Consensus       261 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-----~~~~~~~~~  335 (595)
                      ++ .++.+ +...+..+++|++|++++|. ++.++......     ....+.++.+++.++. +..     ++..  ...
T Consensus       207 ~n-~l~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~-----~~~~~~l~~l~L~~~~-l~~~~l~~l~~~--l~~  275 (353)
T 2z80_A          207 MK-QHILL-LEIFVDVTSSVECLELRDTD-LDTFHFSELST-----GETNSLIKKFTFRNVK-ITDESLFQVMKL--LNQ  275 (353)
T ss_dssp             CS-CSTTH-HHHHHHHTTTEEEEEEESCB-CTTCCCC-----------CCCCCCEEEEESCB-CCHHHHHHHHHH--HHT
T ss_pred             CC-ccccc-hhhhhhhcccccEEECCCCc-ccccccccccc-----ccccchhhcccccccc-ccCcchhhhHHH--Hhc
Confidence            86 45654 33456779999999999998 77654422111     1125678888888754 221     2211  123


Q ss_pred             CcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCe
Q 036689          336 WPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIR  398 (595)
Q Consensus       336 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  398 (595)
                      +++|+.|+++++ .++.+|.                       ..++.+++|++|++++|+..
T Consensus       276 l~~L~~L~Ls~N-~l~~i~~-----------------------~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          276 ISGLLELEFSRN-QLKSVPD-----------------------GIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             CTTCCEEECCSS-CCCCCCT-----------------------TTTTTCTTCCEEECCSSCBC
T ss_pred             ccCCCEEECCCC-CCCccCH-----------------------HHHhcCCCCCEEEeeCCCcc
Confidence            789999999987 4556776                       33467899999999999754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.71  E-value=9.9e-17  Score=160.19  Aligned_cols=257  Identities=14%  Similarity=0.080  Sum_probs=179.7

Q ss_pred             ccccEEEeccCCCCc--cccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           22 KDVEYLCLDKSQDVK--NVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        22 ~~L~~L~L~~~~~~~--~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+++.|+++++...+  .++..+  +.+++|++|+++++..+....+.     .+..+++|++|+++++ .+...  .+.
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l--~~l~~L~~L~L~~~n~l~~~~p~-----~l~~l~~L~~L~Ls~n-~l~~~--~p~  119 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPP-----AIAKLTQLHYLYITHT-NVSGA--IPD  119 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG--GGCTTCSEEEEEEETTEESCCCG-----GGGGCTTCSEEEEEEE-CCEEE--CCG
T ss_pred             ceEEEEECCCCCccCCcccChhH--hCCCCCCeeeCCCCCcccccCCh-----hHhcCCCCCEEECcCC-eeCCc--CCH
Confidence            689999999998865  555555  88999999999952256533233     4678899999999996 66532  133


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccccccc-ccceEecCCCCCc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFG-QLSTLCLGSLPEL  178 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l  178 (595)
                      .+..+++|++|++++| .++...+ ..+..+++|++|++++|.....++.          ....++ +|+.|+++++.--
T Consensus       120 ~~~~l~~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----------~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          120 FLSQIKTLVTLDFSYN-ALSGTLP-PSISSLPNLVGITFDGNRISGAIPD----------SYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             GGGGCTTCCEEECCSS-EEESCCC-GGGGGCTTCCEEECCSSCCEEECCG----------GGGCCCTTCCEEECCSSEEE
T ss_pred             HHhCCCCCCEEeCCCC-ccCCcCC-hHHhcCCCCCeEECcCCcccCcCCH----------HHhhhhhcCcEEECcCCeee
Confidence            4788999999999995 5664333 6778899999999999654435442          334455 8899998876422


Q ss_pred             cccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEE
Q 036689          179 TSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLI  258 (595)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~  258 (595)
                      ...+.                               .+   ..++ |+.|++++|.++...    |..+ ..+++|+.|+
T Consensus       188 ~~~~~-------------------------------~~---~~l~-L~~L~Ls~N~l~~~~----~~~~-~~l~~L~~L~  227 (313)
T 1ogq_A          188 GKIPP-------------------------------TF---ANLN-LAFVDLSRNMLEGDA----SVLF-GSDKNTQKIH  227 (313)
T ss_dssp             EECCG-------------------------------GG---GGCC-CSEEECCSSEEEECC----GGGC-CTTSCCSEEE
T ss_pred             ccCCh-------------------------------HH---hCCc-ccEEECcCCcccCcC----CHHH-hcCCCCCEEE
Confidence            22111                               11   1244 999999999877552    3333 5789999999


Q ss_pred             EecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcc
Q 036689          259 LRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPA  338 (595)
Q Consensus       259 L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~  338 (595)
                      ++++ .++..++.  +..+++|++|++++|. +++..+..+..        +++|+.|+++++.-...++..   ..+++
T Consensus       228 L~~N-~l~~~~~~--~~~l~~L~~L~Ls~N~-l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~ip~~---~~l~~  292 (313)
T 1ogq_A          228 LAKN-SLAFDLGK--VGLSKNLNGLDLRNNR-IYGTLPQGLTQ--------LKFLHSLNVSFNNLCGEIPQG---GNLQR  292 (313)
T ss_dssp             CCSS-EECCBGGG--CCCCTTCCEEECCSSC-CEECCCGGGGG--------CTTCCEEECCSSEEEEECCCS---TTGGG
T ss_pred             CCCC-ceeeecCc--ccccCCCCEEECcCCc-ccCcCChHHhc--------CcCCCEEECcCCcccccCCCC---ccccc
Confidence            9986 45443332  5778999999999998 76444323322        899999999997644455443   34889


Q ss_pred             cceeeecCCCCcccccc
Q 036689          339 LKLLDVSACDQVTVFDS  355 (595)
Q Consensus       339 L~~L~l~~c~~l~~l~~  355 (595)
                      |+.+++.+++.+...|.
T Consensus       293 L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          293 FDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             SCGGGTCSSSEEESTTS
T ss_pred             cChHHhcCCCCccCCCC
Confidence            99999999887665443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.71  E-value=8.4e-17  Score=163.75  Aligned_cols=256  Identities=19%  Similarity=0.143  Sum_probs=144.9

Q ss_pred             CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689          223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD  302 (595)
Q Consensus       223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  302 (595)
                      ++|++|++++|+++.+     +...+..+++|++|+++++ .++.+.+. .+.++++|++|++++|. ++.++...+.. 
T Consensus        52 ~~L~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~-  122 (353)
T 2z80_A           52 EAVKSLDLSNNRITYI-----SNSDLQRCVNLQALVLTSN-GINTIEED-SFSSLGSLEHLDLSYNY-LSNLSSSWFKP-  122 (353)
T ss_dssp             TTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CSSCCHHHHTT-
T ss_pred             ccCcEEECCCCcCccc-----CHHHhccCCCCCEEECCCC-ccCccCHh-hcCCCCCCCEEECCCCc-CCcCCHhHhCC-
Confidence            3566666666655554     2211134566666666654 34443322 24556666666666655 55444321211 


Q ss_pred             CCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCc
Q 036689          303 QVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK  382 (595)
Q Consensus       303 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  382 (595)
                             +++|++|+++++ .+..++.......+++|+.|+++++..++.++.                       ..+.
T Consensus       123 -------l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-----------------------~~~~  171 (353)
T 2z80_A          123 -------LSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-----------------------KDFA  171 (353)
T ss_dssp             -------CTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-----------------------TTTT
T ss_pred             -------CccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCH-----------------------HHcc
Confidence                   556666666653 233333211112245555555555544443333                       1123


Q ss_pred             cCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccc
Q 036689          383 VFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLV  462 (595)
Q Consensus       383 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  462 (595)
                      .+++|++|++++|.                                    +....+..+..+++|+.|+++++ .++.+ 
T Consensus       172 ~l~~L~~L~l~~n~------------------------------------l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-  213 (353)
T 2z80_A          172 GLTFLEELEIDASD------------------------------------LQSYEPKSLKSIQNVSHLILHMK-QHILL-  213 (353)
T ss_dssp             TCCEEEEEEEEETT------------------------------------CCEECTTTTTTCSEEEEEEEECS-CSTTH-
T ss_pred             CCCCCCEEECCCCC------------------------------------cCccCHHHHhccccCCeecCCCC-ccccc-
Confidence            44455555554443                                    34444556777889999999984 56665 


Q ss_pred             cchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccc----cccccccCcccccCCCccEEEEeC
Q 036689          463 ASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLD----SLTSFCSGNYIFKFPSLEVLFVVG  538 (595)
Q Consensus       463 ~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~----~l~~l~~~~~~~~~~~L~~L~l~~  538 (595)
                      +..++..+++|++|+++++. ++.+.......    ....+.++.+++.++.    .+..++...  ..+++|++|++++
T Consensus       214 ~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~----~~~~~~l~~l~L~~~~l~~~~l~~l~~~l--~~l~~L~~L~Ls~  286 (353)
T 2z80_A          214 LEIFVDVTSSVECLELRDTD-LDTFHFSELST----GETNSLIKKFTFRNVKITDESLFQVMKLL--NQISGLLELEFSR  286 (353)
T ss_dssp             HHHHHHHTTTEEEEEEESCB-CTTCCCC----------CCCCCCEEEEESCBCCHHHHHHHHHHH--HTCTTCCEEECCS
T ss_pred             hhhhhhhcccccEEECCCCc-ccccccccccc----ccccchhhccccccccccCcchhhhHHHH--hcccCCCEEECCC
Confidence            34455678999999999986 65543322110    0023445555555531    233455433  3489999999999


Q ss_pred             CCCccccCCCC-CCCCCcceEEeccCC
Q 036689          539 CPKMNIFTTGE-LSTPPRVDVMYRNRG  564 (595)
Q Consensus       539 C~~l~~lp~~~-~~~~~L~~l~i~~~~  564 (595)
                      | +++.+|.+. .++++|+++++++|.
T Consensus       287 N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          287 N-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             C-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence            7 788999875 789999999999754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.70  E-value=1.6e-15  Score=164.29  Aligned_cols=160  Identities=20%  Similarity=0.166  Sum_probs=99.6

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD  301 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  301 (595)
                      +++|++|++++|.++.+     |.    .+++|+.|+++++ .++.++     ..+++|++|++++|. ++.++..    
T Consensus       140 l~~L~~L~Ls~N~l~~l-----~~----~~~~L~~L~L~~N-~l~~l~-----~~~~~L~~L~Ls~N~-l~~l~~~----  199 (622)
T 3g06_A          140 PPGLQELSVSDNQLASL-----PA----LPSELCKLWAYNN-QLTSLP-----MLPSGLQELSVSDNQ-LASLPTL----  199 (622)
T ss_dssp             CTTCCEEECCSSCCSCC-----CC----CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCCC----
T ss_pred             CCCCCEEECcCCcCCCc-----CC----ccCCCCEEECCCC-CCCCCc-----ccCCCCcEEECCCCC-CCCCCCc----
Confidence            36677777777766654     43    2567788888764 455543     345778888888776 6655431    


Q ss_pred             CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcC
Q 036689          302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPE  381 (595)
Q Consensus       302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  381 (595)
                              +++|+.|++.++ .+..++..     +++|+.|+++++ .++.+|.                          
T Consensus       200 --------~~~L~~L~L~~N-~l~~l~~~-----~~~L~~L~Ls~N-~L~~lp~--------------------------  238 (622)
T 3g06_A          200 --------PSELYKLWAYNN-RLTSLPAL-----PSGLKELIVSGN-RLTSLPV--------------------------  238 (622)
T ss_dssp             --------CTTCCEEECCSS-CCSSCCCC-----CTTCCEEECCSS-CCSCCCC--------------------------
T ss_pred             --------cchhhEEECcCC-cccccCCC-----CCCCCEEEccCC-ccCcCCC--------------------------
Confidence                    567788887774 34444432     567777777766 3444443                          


Q ss_pred             ccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccc
Q 036689          382 KVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNL  461 (595)
Q Consensus       382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~  461 (595)
                       .+++|++|++++|....+..      .+++|+.|+++          .+.+..++. .+..+++|+.|+++++ .++..
T Consensus       239 -~l~~L~~L~Ls~N~L~~lp~------~~~~L~~L~Ls----------~N~L~~lp~-~l~~l~~L~~L~L~~N-~l~~~  299 (622)
T 3g06_A          239 -LPSELKELMVSGNRLTSLPM------LPSGLLSLSVY----------RNQLTRLPE-SLIHLSSETTVNLEGN-PLSER  299 (622)
T ss_dssp             -CCTTCCEEECCSSCCSCCCC------CCTTCCEEECC----------SSCCCSCCG-GGGGSCTTCEEECCSC-CCCHH
T ss_pred             -CCCcCcEEECCCCCCCcCCc------ccccCcEEeCC----------CCCCCcCCH-HHhhccccCEEEecCC-CCCCc
Confidence             45777778877775443211      45677777773          345555543 5667777888888774 34443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.70  E-value=1.3e-16  Score=159.39  Aligned_cols=251  Identities=14%  Similarity=0.080  Sum_probs=144.9

Q ss_pred             CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689          223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD  302 (595)
Q Consensus       223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  302 (595)
                      .+++.|++++++++..  ..+|..+ ..+++|++|++++++.+....+. .++++++|++|+++++. ++...+..+.. 
T Consensus        50 ~~l~~L~L~~~~l~~~--~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~-  123 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKP--YPIPSSL-ANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTN-VSGAIPDFLSQ-  123 (313)
T ss_dssp             CCEEEEEEECCCCSSC--EECCGGG-GGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEEC-CEEECCGGGGG-
T ss_pred             ceEEEEECCCCCccCC--cccChhH-hCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCe-eCCcCCHHHhC-
Confidence            5788999999877630  0125554 67899999999975566654443 35889999999999987 76444323332 


Q ss_pred             CCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCc
Q 036689          303 QVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK  382 (595)
Q Consensus       303 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  382 (595)
                             +++|++|+++++.-...++...  ..+++|++|+++++.....+|..                        +.
T Consensus       124 -------l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~------------------------l~  170 (313)
T 1ogq_A          124 -------IKTLVTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDS------------------------YG  170 (313)
T ss_dssp             -------CTTCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCEEECCGG------------------------GG
T ss_pred             -------CCCCCEEeCCCCccCCcCChHH--hcCCCCCeEECcCCcccCcCCHH------------------------Hh
Confidence                   8899999998854322333222  23788888888887644455551                        23


Q ss_pred             cCC-CcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccc
Q 036689          383 VFP-NLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNL  461 (595)
Q Consensus       383 ~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~  461 (595)
                      .++ +|++|++++|......+                                    ..+..++ |+.|+++++ .++..
T Consensus       171 ~l~~~L~~L~L~~N~l~~~~~------------------------------------~~~~~l~-L~~L~Ls~N-~l~~~  212 (313)
T 1ogq_A          171 SFSKLFTSMTISRNRLTGKIP------------------------------------PTFANLN-LAFVDLSRN-MLEGD  212 (313)
T ss_dssp             CCCTTCCEEECCSSEEEEECC------------------------------------GGGGGCC-CSEEECCSS-EEEEC
T ss_pred             hhhhcCcEEECcCCeeeccCC------------------------------------hHHhCCc-ccEEECcCC-cccCc
Confidence            455 78888888876543221                                    1222333 555666552 33333


Q ss_pred             ccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCC
Q 036689          462 VASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPK  541 (595)
Q Consensus       462 ~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~  541 (595)
                      .+ ..+..+++|++|+++++. +...+....        .+++|+.|+++++.--..+|...  ..+++|++|++++|+-
T Consensus       213 ~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~--------~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          213 AS-VLFGSDKNTQKIHLAKNS-LAFDLGKVG--------LSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CG-GGCCTTSCCSEEECCSSE-ECCBGGGCC--------CCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEE
T ss_pred             CC-HHHhcCCCCCEEECCCCc-eeeecCccc--------ccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcc
Confidence            22 233455666666665554 332222221        25566666666643222444333  2356666666666533


Q ss_pred             ccccCCCCCCCCCcceEEeccC
Q 036689          542 MNIFTTGELSTPPRVDVMYRNR  563 (595)
Q Consensus       542 l~~lp~~~~~~~~L~~l~i~~~  563 (595)
                      -..+|.. .++++|+.+++.+|
T Consensus       281 ~~~ip~~-~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          281 CGEIPQG-GNLQRFDVSAYANN  301 (313)
T ss_dssp             EEECCCS-TTGGGSCGGGTCSS
T ss_pred             cccCCCC-ccccccChHHhcCC
Confidence            3345554 44666666666544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=5.7e-16  Score=162.53  Aligned_cols=228  Identities=19%  Similarity=0.190  Sum_probs=164.3

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD  301 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  301 (595)
                      .++++.|++++|+++.+....+     ..+++|++|+++++ .++.+.+ ..+.++++|++|++++|. ++.++...+..
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~-----~~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  134 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSF-----KHLRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDNR-LTTIPNGAFVY  134 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTT-----SSCSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSSC-CSSCCTTTSCS
T ss_pred             CCCCcEEEccCCcCCeeCHHHh-----hCCCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCCc-CCeeCHhHhhc
Confidence            3678889999988887732222     56889999999875 5666543 356888999999999887 87776533333


Q ss_pred             CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcC
Q 036689          302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPE  381 (595)
Q Consensus       302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  381 (595)
                              +++|++|+++++. +..++... ...+++|+.|++++|..++.++.                       ..+
T Consensus       135 --------l~~L~~L~L~~N~-i~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~-----------------------~~~  181 (440)
T 3zyj_A          135 --------LSKLKELWLRNNP-IESIPSYA-FNRIPSLRRLDLGELKRLSYISE-----------------------GAF  181 (440)
T ss_dssp             --------CSSCCEEECCSCC-CCEECTTT-TTTCTTCCEEECCCCTTCCEECT-----------------------TTT
T ss_pred             --------cccCceeeCCCCc-ccccCHHH-hhhCcccCEeCCCCCCCcceeCc-----------------------chh
Confidence                    8899999998854 55554432 22378899999998888877776                       335


Q ss_pred             ccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccc
Q 036689          382 KVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNL  461 (595)
Q Consensus       382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~  461 (595)
                      ..+++|++|++++|....+.    ....+++|+.|++          +.+.+..+.+..+..+++|+.|++++ +.++.+
T Consensus       182 ~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~L----------s~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~  246 (440)
T 3zyj_A          182 EGLSNLRYLNLAMCNLREIP----NLTPLIKLDELDL----------SGNHLSAIRPGSFQGLMHLQKLWMIQ-SQIQVI  246 (440)
T ss_dssp             TTCSSCCEEECTTSCCSSCC----CCTTCSSCCEEEC----------TTSCCCEECTTTTTTCTTCCEEECTT-CCCCEE
T ss_pred             hcccccCeecCCCCcCcccc----ccCCCcccCEEEC----------CCCccCccChhhhccCccCCEEECCC-CceeEE
Confidence            67888999999888755432    2456778888888          44567777777788888899999888 567766


Q ss_pred             ccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccc
Q 036689          462 VASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLD  514 (595)
Q Consensus       462 ~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~  514 (595)
                      .+ ..+..+++|++|+++++. ++.++.....       .+++|+.|++++++
T Consensus       247 ~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          247 ER-NAFDNLQSLVEINLAHNN-LTLLPHDLFT-------PLHHLERIHLHHNP  290 (440)
T ss_dssp             CT-TSSTTCTTCCEEECTTSC-CCCCCTTTTS-------SCTTCCEEECCSSC
T ss_pred             Ch-hhhcCCCCCCEEECCCCC-CCccChhHhc-------cccCCCEEEcCCCC
Confidence            43 445778889999998886 7776654433       47888888887754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.69  E-value=7.9e-17  Score=161.27  Aligned_cols=37  Identities=19%  Similarity=0.137  Sum_probs=21.8

Q ss_pred             CCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEccc
Q 036689          103 SFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINC  141 (595)
Q Consensus       103 ~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  141 (595)
                      .+++|++|++++| .++..++ ..+..+++|++|++++|
T Consensus        32 ~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n   68 (317)
T 3o53_A           32 SAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSN   68 (317)
T ss_dssp             TGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTS
T ss_pred             cCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCC
Confidence            4456666666664 4554433 45566666666666664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.68  E-value=7.5e-19  Score=185.76  Aligned_cols=111  Identities=17%  Similarity=0.050  Sum_probs=69.4

Q ss_pred             cCCccEEeEeCCCCCccccc---chHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccccc---
Q 036689          444 FRNLKILEVSGCKKLTNLVA---SSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLT---  517 (595)
Q Consensus       444 l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~---  517 (595)
                      .++|+.|++++|. ++....   ..++..+++|++|++++|. +.+.......  +.-....++|+.|++++| .++   
T Consensus       312 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~--~~l~~~~~~L~~L~L~~n-~i~~~~  386 (461)
T 1z7x_W          312 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELC--QGLGQPGSVLRVLWLADC-DVSDSS  386 (461)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHH--HHHTSTTCCCCEEECTTS-CCCHHH
T ss_pred             CccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHH--HHHcCCCCceEEEECCCC-CCChhh
Confidence            3689999999975 554311   1344667999999999985 5544221110  000002579999999997 565   


Q ss_pred             --ccccCcccccCCCccEEEEeCCCCcccc-----CCCC-CCCCCcceEEecc
Q 036689          518 --SFCSGNYIFKFPSLEVLFVVGCPKMNIF-----TTGE-LSTPPRVDVMYRN  562 (595)
Q Consensus       518 --~l~~~~~~~~~~~L~~L~l~~C~~l~~l-----p~~~-~~~~~L~~l~i~~  562 (595)
                        .++...  ..+++|++|++++|+ ++..     ...+ ...+.|+.+.+.+
T Consensus       387 ~~~l~~~l--~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~  436 (461)
T 1z7x_W          387 CSSLAATL--LANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYD  436 (461)
T ss_dssp             HHHHHHHH--HHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHH--HhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecc
Confidence              455444  248999999999984 4321     1111 1245788888764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.67  E-value=3.2e-16  Score=156.85  Aligned_cols=217  Identities=16%  Similarity=0.103  Sum_probs=115.9

Q ss_pred             ccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccccc
Q 036689          249 LCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLY  328 (595)
Q Consensus       249 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~  328 (595)
                      ..+++|++|+++++ .++.+.+ ..+..+++|++|++++|. ++++++  +.        .+++|++|+++++. +..++
T Consensus        31 ~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~--~~--------~l~~L~~L~Ls~n~-l~~l~   96 (317)
T 3o53_A           31 QSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNV-LYETLD--LE--------SLSTLRTLDLNNNY-VQELL   96 (317)
T ss_dssp             TTGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTSC-CEEEEE--ET--------TCTTCCEEECCSSE-EEEEE
T ss_pred             ccCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCCc-CCcchh--hh--------hcCCCCEEECcCCc-ccccc
Confidence            34567888888765 5555433 345777888888888776 655543  11        17778888887743 54443


Q ss_pred             CCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcc
Q 036689          329 PGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQH  408 (595)
Q Consensus       329 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  408 (595)
                      .      .++|+.|+++++. ++.++.                          ..+++|++|++++|....+.       
T Consensus        97 ~------~~~L~~L~l~~n~-l~~~~~--------------------------~~~~~L~~L~l~~N~l~~~~-------  136 (317)
T 3o53_A           97 V------GPSIETLHAANNN-ISRVSC--------------------------SRGQGKKNIYLANNKITMLR-------  136 (317)
T ss_dssp             E------CTTCCEEECCSSC-CSEEEE--------------------------CCCSSCEEEECCSSCCCSGG-------
T ss_pred             C------CCCcCEEECCCCc-cCCcCc--------------------------cccCCCCEEECCCCCCCCcc-------
Confidence            2      4777777777654 333333                          23567777777777544321       


Q ss_pred             cccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchh
Q 036689          409 LFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVV  488 (595)
Q Consensus       409 ~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~  488 (595)
                                                   +..+..+++|+.|++++ +.++...+..+...+++|++|++++|. ++.++
T Consensus       137 -----------------------------~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~  185 (317)
T 3o53_A          137 -----------------------------DLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK  185 (317)
T ss_dssp             -----------------------------GBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE
T ss_pred             -----------------------------chhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCc-Ccccc
Confidence                                         11233344555555554 234443333333344555555555554 43332


Q ss_pred             cccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccC
Q 036689          489 KSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNR  563 (595)
Q Consensus       489 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~  563 (595)
                      ...         .+++|+.|+++++ .++.++.+.  ..+++|++|++++| +++.+|..+..+++|+++++++|
T Consensus       186 ~~~---------~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          186 GQV---------VFAKLKTLDLSSN-KLAFMGPEF--QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             CCC---------CCTTCCEEECCSS-CCCEECGGG--GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred             ccc---------ccccCCEEECCCC-cCCcchhhh--cccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence            111         1455555555553 444444332  23555555555554 44455555555555555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.67  E-value=1e-15  Score=152.41  Aligned_cols=136  Identities=16%  Similarity=0.213  Sum_probs=78.0

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCcc-ccchhhhhccCCCcEEEeecccccceeccccc
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKY-IFSASMLGSFEHLQHLEIRYCKGLQEIISKEG  299 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~  299 (595)
                      .+++|++|++++|.+....    +..+ ..+++|++|+++++ .++. ..+ ..+..+++|++|++++|. ++++++..+
T Consensus       124 ~l~~L~~L~l~~n~l~~~~----~~~~-~~l~~L~~L~l~~n-~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~  195 (306)
T 2z66_A          124 SLRNLIYLDISHTHTRVAF----NGIF-NGLSSLEVLKMAGN-SFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLSPTAF  195 (306)
T ss_dssp             TCTTCCEEECTTSCCEECS----TTTT-TTCTTCCEEECTTC-EEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTTTT
T ss_pred             hccCCCEEECCCCcCCccc----hhhc-ccCcCCCEEECCCC-ccccccch-hHHhhCcCCCEEECCCCC-cCCcCHHHh
Confidence            3566777777777665442    2211 45677777777765 3332 122 234667777777777776 666644332


Q ss_pred             CCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCC
Q 036689          300 ADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFL  379 (595)
Q Consensus       300 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  379 (595)
                      ..        +++|++|+++++. +..++... ...+++|+.|+++++......+.                        
T Consensus       196 ~~--------l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~------------------------  241 (306)
T 2z66_A          196 NS--------LSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQ------------------------  241 (306)
T ss_dssp             TT--------CTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTSCCCBCSSS------------------------
T ss_pred             cC--------CCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCCCCcccCHH------------------------
Confidence            22        6777777777744 33332211 12367788888877753332332                        


Q ss_pred             cCccC-CCcceEeccCCCCe
Q 036689          380 PEKVF-PNLEELGLDGKDIR  398 (595)
Q Consensus       380 ~~~~l-~~L~~L~l~~~~~~  398 (595)
                      .+..+ ++|++|++++|+..
T Consensus       242 ~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          242 ELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             SCCCCCTTCCEEECTTCCEE
T ss_pred             HHHhhhccCCEEEccCCCee
Confidence            12344 47888888888644

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.65  E-value=3.2e-15  Score=147.16  Aligned_cols=85  Identities=18%  Similarity=0.131  Sum_probs=46.3

Q ss_pred             cCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhh
Q 036689           47 FLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSA  126 (595)
Q Consensus        47 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~  126 (595)
                      .++|++|+++++ .++.+++.     .+..+++|++|+++++ .++.+.  +..+..+++|++|++++|..++.+++ ..
T Consensus        31 ~~~l~~L~l~~n-~i~~~~~~-----~~~~~~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~l~~n~~l~~~~~-~~  100 (285)
T 1ozn_A           31 PAASQRIFLHGN-RISHVPAA-----SFRACRNLTILWLHSN-VLARID--AAAFTGLALLEQLDLSDNAQLRSVDP-AT  100 (285)
T ss_dssp             CTTCSEEECTTS-CCCEECTT-----TTTTCTTCCEEECCSS-CCCEEC--TTTTTTCTTCCEEECCSCTTCCCCCT-TT
T ss_pred             CCCceEEEeeCC-cCCccCHH-----HcccCCCCCEEECCCC-ccceeC--HhhcCCccCCCEEeCCCCCCccccCH-HH
Confidence            456666666665 45555332     3445566666666664 444432  22245566666666666543554432 44


Q ss_pred             hhcCCCCcEEEEccc
Q 036689          127 AKCLPRLERIAVINC  141 (595)
Q Consensus       127 ~~~l~~L~~L~l~~c  141 (595)
                      +..+++|++|++++|
T Consensus       101 ~~~l~~L~~L~l~~n  115 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRC  115 (285)
T ss_dssp             TTTCTTCCEEECTTS
T ss_pred             hcCCcCCCEEECCCC
Confidence            556666666666664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.65  E-value=1.9e-15  Score=150.38  Aligned_cols=252  Identities=15%  Similarity=0.129  Sum_probs=125.0

Q ss_pred             eeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecc--cccCCCCC
Q 036689          227 VLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIIS--KEGADDQV  304 (595)
Q Consensus       227 ~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~~~  304 (595)
                      .++.++..++.+     |..+   .++|++|+++++ .++.++. ..+.++++|++|+++++. ++.+..  ....    
T Consensus        11 ~l~c~~~~l~~i-----p~~~---~~~l~~L~L~~n-~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~----   75 (306)
T 2z66_A           11 EIRCNSKGLTSV-----PTGI---PSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSSNG-LSFKGCCSQSDF----   75 (306)
T ss_dssp             EEECCSSCCSSC-----CSCC---CTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCEEEEEEHHHH----
T ss_pred             EEEcCCCCcccC-----CCCC---CCCCCEEECCCC-ccCccCH-hHhhccccCCEEECCCCc-cCcccCcccccc----
Confidence            344444444444     5432   456777777654 3554432 334666777777777665 544321  1111    


Q ss_pred             CCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccC
Q 036689          305 PPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVF  384 (595)
Q Consensus       305 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  384 (595)
                          .+++|++|+++++. +..++..  ...+++|++|+++++. ++.++.                      +..+..+
T Consensus        76 ----~~~~L~~L~Ls~n~-i~~l~~~--~~~l~~L~~L~l~~n~-l~~~~~----------------------~~~~~~l  125 (306)
T 2z66_A           76 ----GTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQHSN-LKQMSE----------------------FSVFLSL  125 (306)
T ss_dssp             ----SCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTTSE-EESSTT----------------------TTTTTTC
T ss_pred             ----cccccCEEECCCCc-cccChhh--cCCCCCCCEEECCCCc-cccccc----------------------chhhhhc
Confidence                15666777766643 3333322  1125666666666543 222221                      0113456


Q ss_pred             CCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccc
Q 036689          385 PNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVAS  464 (595)
Q Consensus       385 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  464 (595)
                      ++|++|++++|......                                    +..+..+++|+.|+++++ .++.....
T Consensus       126 ~~L~~L~l~~n~l~~~~------------------------------------~~~~~~l~~L~~L~l~~n-~l~~~~~~  168 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAF------------------------------------NGIFNGLSSLEVLKMAGN-SFQENFLP  168 (306)
T ss_dssp             TTCCEEECTTSCCEECS------------------------------------TTTTTTCTTCCEEECTTC-EEGGGEEC
T ss_pred             cCCCEEECCCCcCCccc------------------------------------hhhcccCcCCCEEECCCC-ccccccch
Confidence            67777777666543221                                    223334455555555553 23220011


Q ss_pred             hHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEeCCCCccc
Q 036689          465 SAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNI  544 (595)
Q Consensus       465 ~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~  544 (595)
                      ..+..+++|++|++++|. +++++.....       .+++|+.|+++++ .++.++.... ..+++|++|++++|.-...
T Consensus       169 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-------~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          169 DIFTELRNLTFLDLSQCQ-LEQLSPTAFN-------SLSSLQVLNMSHN-NFFSLDTFPY-KCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             SCCTTCTTCCEEECTTSC-CCEECTTTTT-------TCTTCCEEECTTS-CCSBCCSGGG-TTCTTCCEEECTTSCCCBC
T ss_pred             hHHhhCcCCCEEECCCCC-cCCcCHHHhc-------CCCCCCEEECCCC-ccCccChhhc-cCcccCCEeECCCCCCccc
Confidence            223455556666665554 4444222211       2556666666663 3444433221 2367777888777744344


Q ss_pred             cCCCCCCCC-CcceEEeccCCCccccCc
Q 036689          545 FTTGELSTP-PRVDVMYRNRGAPCWDGD  571 (595)
Q Consensus       545 lp~~~~~~~-~L~~l~i~~~~~~~~~~~  571 (595)
                      .|..+..++ +|+++++++|. |.++..
T Consensus       239 ~~~~~~~~~~~L~~L~L~~N~-~~~~c~  265 (306)
T 2z66_A          239 KKQELQHFPSSLAFLNLTQND-FACTCE  265 (306)
T ss_dssp             SSSSCCCCCTTCCEEECTTCC-EECSGG
T ss_pred             CHHHHHhhhccCCEEEccCCC-eecccC
Confidence            455555563 78888887543 444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=2.6e-15  Score=159.11  Aligned_cols=102  Identities=11%  Similarity=-0.043  Sum_probs=54.6

Q ss_pred             ccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccC
Q 036689          443 SFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSG  522 (595)
Q Consensus       443 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~  522 (595)
                      .+++|+.|++++ +.++.++..   ..+++|++|++++|. ++.++....        .+++|+.|+++++ .++.+|..
T Consensus       167 ~l~~L~~L~Ls~-N~l~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~--------~l~~L~~L~Ls~N-~l~~lp~~  232 (487)
T 3oja_A          167 SSDTLEHLNLQY-NFIYDVKGQ---VVFAKLKTLDLSSNK-LAFMGPEFQ--------SAAGVTWISLRNN-KLVLIEKA  232 (487)
T ss_dssp             GTTTCCEEECTT-SCCCEEECC---CCCTTCCEEECCSSC-CCEECGGGG--------GGTTCSEEECTTS-CCCEECTT
T ss_pred             hCCcccEEecCC-Ccccccccc---ccCCCCCEEECCCCC-CCCCCHhHc--------CCCCccEEEecCC-cCcccchh
Confidence            456666666666 345544221   235666666666665 555544322        2566666666663 45555544


Q ss_pred             cccccCCCccEEEEeCCCCc-cccCCCCCCCCCcceEEe
Q 036689          523 NYIFKFPSLEVLFVVGCPKM-NIFTTGELSTPPRVDVMY  560 (595)
Q Consensus       523 ~~~~~~~~L~~L~l~~C~~l-~~lp~~~~~~~~L~~l~i  560 (595)
                      .  ..+++|+.|++++|+-. ..+|..+..++.|+.+.+
T Consensus       233 l--~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          233 L--RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             C--CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             h--ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            3  23566666666665433 234444444555555555

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.62  E-value=5.8e-15  Score=145.30  Aligned_cols=206  Identities=20%  Similarity=0.194  Sum_probs=133.4

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD  301 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  301 (595)
                      .++|++|+++++.++.+     +...+..+++|++|+++++ .++.+.+. .+..+++|++|+++++..++.+++..+..
T Consensus        31 ~~~l~~L~l~~n~i~~~-----~~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~  103 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHV-----PAASFRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHG  103 (285)
T ss_dssp             CTTCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             CCCceEEEeeCCcCCcc-----CHHHcccCCCCCEEECCCC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence            46788888888888776     3222256788888888875 56665333 45778888888888886566664433322


Q ss_pred             CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcC
Q 036689          302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPE  381 (595)
Q Consensus       302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  381 (595)
                              +++|++|+++++. +..+.... ...+++|++|+++++. ++.++.                       ..+
T Consensus       104 --------l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-----------------------~~~  149 (285)
T 1ozn_A          104 --------LGRLHTLHLDRCG-LQELGPGL-FRGLAALQYLYLQDNA-LQALPD-----------------------DTF  149 (285)
T ss_dssp             --------CTTCCEEECTTSC-CCCCCTTT-TTTCTTCCEEECCSSC-CCCCCT-----------------------TTT
T ss_pred             --------CcCCCEEECCCCc-CCEECHhH-hhCCcCCCEEECCCCc-ccccCH-----------------------hHh
Confidence                    7888888888854 44433221 2236788888888764 444443                       224


Q ss_pred             ccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccc
Q 036689          382 KVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNL  461 (595)
Q Consensus       382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~  461 (595)
                      +.+++|++|++++|....+...  ....+++|+.|++.          .+.+....+..+..+++|+.|++++ +.++.+
T Consensus       150 ~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~----------~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~  216 (285)
T 1ozn_A          150 RDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLLH----------QNRVAHVHPHAFRDLGRLMTLYLFA-NNLSAL  216 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEECC----------SSCCCEECTTTTTTCTTCCEEECCS-SCCSCC
T ss_pred             ccCCCccEEECCCCcccccCHH--HhcCccccCEEECC----------CCcccccCHhHccCcccccEeeCCC-CcCCcC
Confidence            5678888888888865543321  12346677777773          3456666565666777777777777 356655


Q ss_pred             ccchHHhhcccccEEEEcCcc
Q 036689          462 VASSAAQSLVALVKMQVFGCR  482 (595)
Q Consensus       462 ~~~~~~~~l~~L~~L~l~~c~  482 (595)
                       +...+..+++|++|++++++
T Consensus       217 -~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          217 -PTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             -CHHHHTTCTTCCEEECCSSC
T ss_pred             -CHHHcccCcccCEEeccCCC
Confidence             33445667777777777765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.61  E-value=6.9e-15  Score=140.74  Aligned_cols=86  Identities=16%  Similarity=0.204  Sum_probs=63.4

Q ss_pred             CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhh
Q 036689           48 LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA  127 (595)
Q Consensus        48 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~  127 (595)
                      ++|++|+++++ .++.+++.     .+..+++|++|+++++..++.+...  .+..+++|++|++++|+.++.+++ ..+
T Consensus        31 ~~l~~L~l~~n-~l~~i~~~-----~~~~l~~L~~L~l~~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i~~-~~f  101 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIPSH-----AFSNLPNISRIYVSIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYIDP-DAL  101 (239)
T ss_dssp             TTCCEEEEESC-CCSEECTT-----TTTTCTTCCEEEEECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEECT-TSE
T ss_pred             CcccEEEEeCC-cceEECHH-----HccCCCCCcEEeCCCCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEcCH-HHh
Confidence            37888888888 68777543     4567888888888886337666332  367788888888888677877654 567


Q ss_pred             hcCCCCcEEEEcccC
Q 036689          128 KCLPRLERIAVINCR  142 (595)
Q Consensus       128 ~~l~~L~~L~l~~c~  142 (595)
                      .++++|++|++++|.
T Consensus       102 ~~l~~L~~L~l~~n~  116 (239)
T 2xwt_C          102 KELPLLKFLGIFNTG  116 (239)
T ss_dssp             ECCTTCCEEEEEEEC
T ss_pred             CCCCCCCEEeCCCCC
Confidence            788888888888853

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=5.4e-16  Score=164.45  Aligned_cols=239  Identities=16%  Similarity=0.135  Sum_probs=174.0

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  300 (595)
                      .+++|+.|++++|.++.+.    |..+ ..+++|+.|+++++ .++..++   ++.+++|++|++++|. +++++.    
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~----~~~~-~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~----   97 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQIS----AADL-APFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNNY-VQELLV----   97 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCC----GGGG-TTCTTCCEEECTTS-CCEEEEE---CTTCTTCCEEECCSSE-EEEEEE----
T ss_pred             cCCCccEEEeeCCcCCCCC----HHHH-hCCCCCCEEEeeCC-CCCCCcc---cccCCCCCEEEecCCc-CCCCCC----
Confidence            4668999999999887762    2233 67899999999986 5665544   5889999999999997 888876    


Q ss_pred             CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689          301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP  380 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  380 (595)
                               .++|+.|+++++. +..++...    +++|+.|++++|..-...|.                        .
T Consensus        98 ---------~~~L~~L~L~~N~-l~~~~~~~----l~~L~~L~L~~N~l~~~~~~------------------------~  139 (487)
T 3oja_A           98 ---------GPSIETLHAANNN-ISRVSCSR----GQGKKNIYLANNKITMLRDL------------------------D  139 (487)
T ss_dssp             ---------CTTCCEEECCSSC-CCCEEECC----CSSCEEEECCSSCCCSGGGB------------------------C
T ss_pred             ---------CCCcCEEECcCCc-CCCCCccc----cCCCCEEECCCCCCCCCCch------------------------h
Confidence                     6899999999965 55444432    78999999998764332332                        2


Q ss_pred             CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689          381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN  460 (595)
Q Consensus       381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~  460 (595)
                      ++.+++|++|++++|......+... ...+++|+.|++++          +.+..+++  ...+++|+.|++++ +.++.
T Consensus       140 ~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~----------N~l~~~~~--~~~l~~L~~L~Ls~-N~l~~  205 (487)
T 3oja_A          140 EGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQY----------NFIYDVKG--QVVFAKLKTLDLSS-NKLAF  205 (487)
T ss_dssp             GGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTT----------SCCCEEEC--CCCCTTCCEEECCS-SCCCE
T ss_pred             hcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCC----------Cccccccc--cccCCCCCEEECCC-CCCCC
Confidence            4678999999999998766432211 12568999999943          55666543  33488999999998 57887


Q ss_pred             cccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccc-cccccCcccccCCCccEEEEeC
Q 036689          461 LVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSL-TSFCSGNYIFKFPSLEVLFVVG  538 (595)
Q Consensus       461 ~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~~~~~~L~~L~l~~  538 (595)
                      +++.  +..+++|++|++++|. +..++.....        +++|+.|++++++-. ..++...  ..++.|+.+++..
T Consensus       206 ~~~~--~~~l~~L~~L~Ls~N~-l~~lp~~l~~--------l~~L~~L~l~~N~l~c~~~~~~~--~~l~~L~~l~~~~  271 (487)
T 3oja_A          206 MGPE--FQSAAGVTWISLRNNK-LVLIEKALRF--------SQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQT  271 (487)
T ss_dssp             ECGG--GGGGTTCSEEECTTSC-CCEECTTCCC--------CTTCCEEECTTCCBCHHHHHHHH--TTCHHHHHHHHHH
T ss_pred             CCHh--HcCCCCccEEEecCCc-Ccccchhhcc--------CCCCCEEEcCCCCCcCcchHHHH--HhCCCCcEEeccc
Confidence            7543  5788999999999987 7777655433        789999999997544 2444333  2477788887763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.58  E-value=1.9e-14  Score=137.70  Aligned_cols=42  Identities=19%  Similarity=0.212  Sum_probs=19.5

Q ss_pred             CccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecc
Q 036689          253 NLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIIS  296 (595)
Q Consensus       253 ~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~  296 (595)
                      +|+.|+++++ .++.+++. .+..+++|++|+++++..++.++.
T Consensus        32 ~l~~L~l~~n-~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~   73 (239)
T 2xwt_C           32 STQTLKLIET-HLRTIPSH-AFSNLPNISRIYVSIDVTLQQLES   73 (239)
T ss_dssp             TCCEEEEESC-CCSEECTT-TTTTCTTCCEEEEECCSSCCEECT
T ss_pred             cccEEEEeCC-cceEECHH-HccCCCCCcEEeCCCCCCcceeCH
Confidence            4555555543 34443321 234455555555555533444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.57  E-value=1.4e-13  Score=139.70  Aligned_cols=243  Identities=16%  Similarity=0.136  Sum_probs=135.8

Q ss_pred             ceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCC
Q 036689          226 EVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVP  305 (595)
Q Consensus       226 ~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  305 (595)
                      ++++-++++++.+     |..+   .+++++|+|+++ .++.+++ ..+.++++|++|++++|.-.+.++...+.+    
T Consensus        12 ~~v~C~~~~Lt~i-----P~~l---~~~l~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~----   77 (350)
T 4ay9_X           12 RVFLCQESKVTEI-----PSDL---PRNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSN----   77 (350)
T ss_dssp             TEEEEESTTCCSC-----CTTC---CTTCSEEEEESC-CCSEECT-TSSTTCTTCCEEEEECCTTCCEECTTSBCS----
T ss_pred             CEEEecCCCCCcc-----CcCc---CCCCCEEEccCC-cCCCcCH-HHHcCCCCCCEEECcCCCCCCccChhHhhc----
Confidence            3455555567666     7654   467888888864 6777644 345788888888888887334454432322    


Q ss_pred             CCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCC
Q 036689          306 PNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFP  385 (595)
Q Consensus       306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  385 (595)
                          +++|+++.+.+++++..++.+.. ..+++|+.|+++++. ++.++.                       .......
T Consensus        78 ----L~~l~~~l~~~~N~l~~l~~~~f-~~l~~L~~L~l~~n~-l~~~~~-----------------------~~~~~~~  128 (350)
T 4ay9_X           78 ----LPKLHEIRIEKANNLLYINPEAF-QNLPNLQYLLISNTG-IKHLPD-----------------------VHKIHSL  128 (350)
T ss_dssp             ----CTTCCEEEEEEETTCCEECTTSB-CCCTTCCEEEEEEEC-CSSCCC-----------------------CTTCCBS
T ss_pred             ----chhhhhhhcccCCcccccCchhh-hhccccccccccccc-cccCCc-----------------------hhhcccc
Confidence                67777766666666776655432 226778888887653 444443                       1112344


Q ss_pred             CcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccch
Q 036689          386 NLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASS  465 (595)
Q Consensus       386 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~  465 (595)
                      ++..+++.++..+...+..........++.|++          +.+.+..+++ .....++|+.+++.+++.++.++. .
T Consensus       129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L----------~~N~i~~i~~-~~f~~~~L~~l~l~~~n~l~~i~~-~  196 (350)
T 4ay9_X          129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWL----------NKNGIQEIHN-SAFNGTQLDELNLSDNNNLEELPN-D  196 (350)
T ss_dssp             SCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC----------CSSCCCEECT-TSSTTEEEEEEECTTCTTCCCCCT-T
T ss_pred             hhhhhhhccccccccccccchhhcchhhhhhcc----------ccccccCCCh-hhccccchhHHhhccCCcccCCCH-H
Confidence            566677666554442221111122234555665          3344555544 333345566666665566665532 3


Q ss_pred             HHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEEe
Q 036689          466 AAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFVV  537 (595)
Q Consensus       466 ~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l~  537 (595)
                      +++.+++|++|+++++. ++.++..          .|.+|+.|.+.++++++.+|. .  ..+++|+.+++.
T Consensus       197 ~f~~l~~L~~LdLs~N~-l~~lp~~----------~~~~L~~L~~l~~~~l~~lP~-l--~~l~~L~~l~l~  254 (350)
T 4ay9_X          197 VFHGASGPVILDISRTR-IHSLPSY----------GLENLKKLRARSTYNLKKLPT-L--EKLVALMEASLT  254 (350)
T ss_dssp             TTTTEECCSEEECTTSC-CCCCCSS----------SCTTCCEEECTTCTTCCCCCC-T--TTCCSCCEEECS
T ss_pred             HhccCcccchhhcCCCC-cCccChh----------hhccchHhhhccCCCcCcCCC-c--hhCcChhhCcCC
Confidence            34566666666666654 5555432          144555665555556665552 1  235666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.56  E-value=2.2e-15  Score=152.11  Aligned_cols=260  Identities=16%  Similarity=0.094  Sum_probs=165.1

Q ss_pred             ccccEEEeccCCCCcccccccccccc--CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           22 KDVEYLCLDKSQDVKNVLFDLDREGF--LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        22 ~~L~~L~L~~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      ..++.+++.++....   ..+  ..+  ++++.|++.++ .+....+      ....+++|++|+++++ .+.... .+.
T Consensus        47 ~~~~~l~l~~~~~~~---~~~--~~~~~~~l~~L~l~~n-~l~~~~~------~~~~~~~L~~L~L~~~-~l~~~~-~~~  112 (336)
T 2ast_B           47 SLWQTLDLTGKNLHP---DVT--GRLLSQGVIAFRCPRS-FMDQPLA------EHFSPFRVQHMDLSNS-VIEVST-LHG  112 (336)
T ss_dssp             TTSSEEECTTCBCCH---HHH--HHHHHTTCSEEECTTC-EECSCCC------SCCCCBCCCEEECTTC-EECHHH-HHH
T ss_pred             hhheeeccccccCCH---HHH--HhhhhccceEEEcCCc-cccccch------hhccCCCCCEEEccCC-CcCHHH-HHH
Confidence            447888888775531   122  455  89999999887 4543322      2446899999999997 344310 122


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT  179 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  179 (595)
                      .+..+++|++|++++| .+++..+ ..++.+++|++|++++|..+....        .......+++|++|+++++..+.
T Consensus       113 ~~~~~~~L~~L~L~~~-~l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~~--------l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGL-RLSDPIV-NTLAKNSNLVRLNLSGCSGFSEFA--------LQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             HHTTBCCCSEEECTTC-BCCHHHH-HHHTTCTTCSEEECTTCBSCCHHH--------HHHHHHHCTTCCEEECCCCTTCC
T ss_pred             HHhhCCCCCEEeCcCc-ccCHHHH-HHHhcCCCCCEEECCCCCCCCHHH--------HHHHHhcCCCCCEEcCCCCCCcC
Confidence            2678899999999997 4554333 567789999999999986554310        00123457889999999886665


Q ss_pred             ccccccccccccccccccccCccccccccccCCCccccccccCC-ccceeecccc--cceeecccCCCccccccCCCccE
Q 036689          180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALS-NLEVLEMNKV--NIEKIWHNQLPVAMFLCFQNLTR  256 (595)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~--~l~~~~~~~~~~~~~~~l~~L~~  256 (595)
                      ....                                ......++ +|++|++++|  .+++.   .++..+ ..+++|++
T Consensus       183 ~~~~--------------------------------~~~~~~l~~~L~~L~l~~~~~~~~~~---~l~~~~-~~~~~L~~  226 (336)
T 2ast_B          183 EKHV--------------------------------QVAVAHVSETITQLNLSGYRKNLQKS---DLSTLV-RRCPNLVH  226 (336)
T ss_dssp             HHHH--------------------------------HHHHHHSCTTCCEEECCSCGGGSCHH---HHHHHH-HHCTTCSE
T ss_pred             hHHH--------------------------------HHHHHhcccCCCEEEeCCCcccCCHH---HHHHHH-hhCCCCCE
Confidence            4210                                01112477 9999999998  34321   124333 57899999


Q ss_pred             EEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccC
Q 036689          257 LILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEW  336 (595)
Q Consensus       257 L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~  336 (595)
                      |++++|..+++..+. .+.++++|++|++++|..+........        ..+++|+.|++++|  +.+   .....-.
T Consensus       227 L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l--------~~~~~L~~L~l~~~--i~~---~~~~~l~  292 (336)
T 2ast_B          227 LDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLEL--------GEIPTLKTLQVFGI--VPD---GTLQLLK  292 (336)
T ss_dssp             EECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGG--------GGCTTCCEEECTTS--SCT---TCHHHHH
T ss_pred             EeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHH--------hcCCCCCEEeccCc--cCH---HHHHHHH
Confidence            999998766653333 468899999999999974443221111        12899999999998  322   1111101


Q ss_pred             cccceeeecCCCCcccccc
Q 036689          337 PALKLLDVSACDQVTVFDS  355 (595)
Q Consensus       337 ~~L~~L~l~~c~~l~~l~~  355 (595)
                      .+|+.|++.++..-+..|.
T Consensus       293 ~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          293 EALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             HHSTTSEESCCCSCCTTCS
T ss_pred             hhCcceEEecccCccccCC
Confidence            3477777865543333444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.55  E-value=1.1e-13  Score=134.88  Aligned_cols=86  Identities=19%  Similarity=0.317  Sum_probs=51.5

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  300 (595)
                      .+++|++|++++|.++.+     |...+..+++|+.|+++++ .++.+++ ..+..+++|++|++++|. ++.++...+.
T Consensus       131 ~l~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~  202 (270)
T 2o6q_A          131 SLTKLTYLSLGYNELQSL-----PKGVFDKLTSLKELRLYNN-QLKRVPE-GAFDKLTELKTLKLDNNQ-LKRVPEGAFD  202 (270)
T ss_dssp             TCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred             cCcCCCEEECCCCcCCcc-----CHhHccCCcccceeEecCC-cCcEeCh-hHhccCCCcCEEECCCCc-CCcCCHHHhc
Confidence            356677777777766655     3332245677777777764 4555433 234667777777777775 6665542222


Q ss_pred             CCCCCCCcCCCcccEEeecCCC
Q 036689          301 DDQVPPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~  322 (595)
                      .        +++|+.|++.+++
T Consensus       203 ~--------l~~L~~L~l~~N~  216 (270)
T 2o6q_A          203 S--------LEKLKMLQLQENP  216 (270)
T ss_dssp             T--------CTTCCEEECCSSC
T ss_pred             c--------ccCCCEEEecCCC
Confidence            1        6677777777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.53  E-value=2.2e-13  Score=138.16  Aligned_cols=226  Identities=18%  Similarity=0.147  Sum_probs=151.8

Q ss_pred             CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689          223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD  302 (595)
Q Consensus       223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  302 (595)
                      +++++|++++|+++.+     |...|..+++|++|+|+++...+.+ +...+.++++++++.+.++.+++.+++..+.. 
T Consensus        30 ~~l~~L~Ls~N~i~~i-----~~~~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~-  102 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVI-----QKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYINPEAFQN-  102 (350)
T ss_dssp             TTCSEEEEESCCCSEE-----CTTSSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEEEEEEETTCCEECTTSBCC-
T ss_pred             CCCCEEEccCCcCCCc-----CHHHHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhhhcccCCcccccCchhhhh-
Confidence            5788888888888877     5543367888999999887544544 33345778888776666655688887644433 


Q ss_pred             CCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCc
Q 036689          303 QVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK  382 (595)
Q Consensus       303 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  382 (595)
                             +++|+.|+++++. +..++.... ....++..+.+.++..+..++..                      .+..
T Consensus       103 -------l~~L~~L~l~~n~-l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~----------------------~f~~  151 (350)
T 4ay9_X          103 -------LPNLQYLLISNTG-IKHLPDVHK-IHSLQKVLLDIQDNINIHTIERN----------------------SFVG  151 (350)
T ss_dssp             -------CTTCCEEEEEEEC-CSSCCCCTT-CCBSSCEEEEEESCTTCCEECTT----------------------SSTT
T ss_pred             -------ccccccccccccc-cccCCchhh-cccchhhhhhhcccccccccccc----------------------chhh
Confidence                   7888888888843 444443221 12456777788777777777661                      1122


Q ss_pred             cCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccc
Q 036689          383 VFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLV  462 (595)
Q Consensus       383 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  462 (595)
                      ....++.|++++|....+....+   ...+|+.+.+.         .++.+..+++..+..+++|+.|++++ +.++.++
T Consensus       152 ~~~~l~~L~L~~N~i~~i~~~~f---~~~~L~~l~l~---------~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp  218 (350)
T 4ay9_X          152 LSFESVILWLNKNGIQEIHNSAF---NGTQLDELNLS---------DNNNLEELPNDVFHGASGPVILDISR-TRIHSLP  218 (350)
T ss_dssp             SBSSCEEEECCSSCCCEECTTSS---TTEEEEEEECT---------TCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCC
T ss_pred             cchhhhhhccccccccCCChhhc---cccchhHHhhc---------cCCcccCCCHHHhccCcccchhhcCC-CCcCccC
Confidence            33467888888887665543322   23466777663         45677777776777888899999988 5788774


Q ss_pred             cchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccc
Q 036689          463 ASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLD  512 (595)
Q Consensus       463 ~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~  512 (595)
                      .    ..+.+|+.|.+.++..+++++.- .        .|++|+.+++.+
T Consensus       219 ~----~~~~~L~~L~~l~~~~l~~lP~l-~--------~l~~L~~l~l~~  255 (350)
T 4ay9_X          219 S----YGLENLKKLRARSTYNLKKLPTL-E--------KLVALMEASLTY  255 (350)
T ss_dssp             S----SSCTTCCEEECTTCTTCCCCCCT-T--------TCCSCCEEECSC
T ss_pred             h----hhhccchHhhhccCCCcCcCCCc-h--------hCcChhhCcCCC
Confidence            3    23567888888888878777642 2        378888888765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.53  E-value=5.9e-15  Score=147.25  Aligned_cols=253  Identities=18%  Similarity=0.156  Sum_probs=167.1

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCC-------cCCCccEEeccCccCcc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDD-------AFPILESLNLYNLIKLE   92 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~   92 (595)
                      ..++|++|++.++..  .++..+  ...  |++|+|+++ .++......    ...       .+++|++|+++++ +++
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~--~~~--L~~L~L~~n-~l~~~~~~~----~~~~~~~~~~~l~~L~~L~L~~n-~l~  108 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQF--TDI--IKSLSLKRL-TVRAARIPS----RILFGALRVLGISGLQELTLENL-EVT  108 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHH--HHH--HHHCCCCEE-EEEEEECBH----HHHHHHHHHHTTSCCCEEEEEEE-BCB
T ss_pred             cCCCceeEeeccccc--ccHHHH--HHH--Hhhcccccc-cccCCCcCH----HHHHHHHHhcCcCCccEEEccCC-ccc
Confidence            567889999988877  444433  222  888888887 565431110    111       4789999999996 565


Q ss_pred             ccccccccc--cCCCCccEEEecCCCCcccccchhhhhcC-----CCCcEEEEcccCCcceeecccCccccccccccccc
Q 036689           93 RICQDRLSV--QSFNELKTIRVELCDQLSNIFLLSAAKCL-----PRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFG  165 (595)
Q Consensus        93 ~~~~~~~~~--~~l~~L~~L~L~~c~~l~~~~~~~~~~~l-----~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~  165 (595)
                      ...  +..+  ..+++|++|+++++ .+++.|  ..++.+     ++|++|++++|. +..++.         .....++
T Consensus       109 ~~~--~~~~~~~~l~~L~~L~Ls~N-~l~~~~--~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~---------~~~~~l~  173 (312)
T 1wwl_A          109 GTA--PPPLLEATGPDLNILNLRNV-SWATRD--AWLAELQQWLKPGLKVLSIAQAH-SLNFSC---------EQVRVFP  173 (312)
T ss_dssp             SCC--CCCSSSCCSCCCSEEEEESC-BCSSSS--SHHHHHHTTCCTTCCEEEEESCS-CCCCCT---------TTCCCCS
T ss_pred             chh--HHHHHHhcCCCccEEEccCC-CCcchh--HHHHHHHHhhcCCCcEEEeeCCC-CccchH---------HHhccCC
Confidence            421  2223  78899999999995 677664  555555     899999999854 444331         1344678


Q ss_pred             ccceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCc
Q 036689          166 QLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPV  245 (595)
Q Consensus       166 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~  245 (595)
                      +|+.|+++++.-........          ..+                    ...+++|++|++++|.++.+.  .++.
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~----------~~~--------------------~~~l~~L~~L~L~~N~l~~~~--~~~~  221 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLIS----------ALC--------------------PLKFPTLQVLALRNAGMETPS--GVCS  221 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHH----------HSC--------------------TTSCTTCCEEECTTSCCCCHH--HHHH
T ss_pred             CCCEEECCCCCcCcchHHHH----------HHH--------------------hccCCCCCEEECCCCcCcchH--HHHH
Confidence            89999998876432211000          000                    024789999999999877431  1133


Q ss_pred             cccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcc
Q 036689          246 AMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELK  325 (595)
Q Consensus       246 ~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~  325 (595)
                      .++..+++|++|+++++ .++...+...+..+++|++|++++|. ++.++.. .          .++|++|+++++ .++
T Consensus       222 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~-~----------~~~L~~L~Ls~N-~l~  287 (312)
T 1wwl_A          222 ALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKG-L----------PAKLSVLDLSYN-RLD  287 (312)
T ss_dssp             HHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSS-C----------CSEEEEEECCSS-CCC
T ss_pred             HHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChhhhh-c----------cCCceEEECCCC-CCC
Confidence            33346789999999976 56654433345668899999999998 7766541 1          378999999995 466


Q ss_pred             cccCCCccccCcccceeeecCCC
Q 036689          326 CLYPGMHTSEWPALKLLDVSACD  348 (595)
Q Consensus       326 ~~~~~~~~~~~~~L~~L~l~~c~  348 (595)
                      .++.   ...+++|+.|++++++
T Consensus       288 ~~p~---~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          288 RNPS---PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             SCCC---TTTSCEEEEEECTTCT
T ss_pred             CChh---HhhCCCCCEEeccCCC
Confidence            6543   2348999999998875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.52  E-value=2.7e-13  Score=132.59  Aligned_cols=108  Identities=14%  Similarity=0.094  Sum_probs=84.9

Q ss_pred             cccccEEEeccCCCCccccc-cccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           21 IKDVEYLCLDKSQDVKNVLF-DLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        21 l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+++++|+++++... .+++ .+  .++++|++|++++| .++.+.+.     .+..+++|++|+++++ .++.+..  .
T Consensus        27 ~~~l~~L~ls~n~l~-~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~--~   94 (276)
T 2z62_A           27 PFSTKNLDLSFNPLR-HLGSYSF--FSFPELQVLDLSRC-EIQTIEDG-----AYQSLSHLSTLILTGN-PIQSLAL--G   94 (276)
T ss_dssp             CTTCCEEECTTCCCC-EECTTTT--TTCTTCSEEECTTC-CCCEECTT-----TTTTCTTCCEEECTTC-CCCEECT--T
T ss_pred             CCCccEEECCCCccc-ccCHhHh--ccccCCcEEECCCC-cCCccCHH-----HccCCcCCCEEECCCC-ccCccCh--h
Confidence            457999999999773 4443 34  78999999999999 78887544     5678899999999996 6766532  2


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      .+..+++|++|++++| .++.+++ ..++.+++|++|++++|.
T Consensus        95 ~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~  135 (276)
T 2z62_A           95 AFSGLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNL  135 (276)
T ss_dssp             TTTTCTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSSC
T ss_pred             hhcCCccccEEECCCC-CccccCc-hhcccCCCCCEEECcCCc
Confidence            3778999999999995 6666653 357889999999999854

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.51  E-value=2.4e-13  Score=133.04  Aligned_cols=81  Identities=21%  Similarity=0.251  Sum_probs=37.8

Q ss_pred             CCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhh
Q 036689           49 QLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAK  128 (595)
Q Consensus        49 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~  128 (595)
                      +|++|+++++ .++.+++.     .+..+++|++|+++++ .+..+..  ..+..+++|++|+++++ .++..++ ..+.
T Consensus        29 ~l~~L~ls~n-~l~~~~~~-----~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~   97 (276)
T 2z62_A           29 STKNLDLSFN-PLRHLGSY-----SFFSFPELQVLDLSRC-EIQTIED--GAYQSLSHLSTLILTGN-PIQSLAL-GAFS   97 (276)
T ss_dssp             TCCEEECTTC-CCCEECTT-----TTTTCTTCSEEECTTC-CCCEECT--TTTTTCTTCCEEECTTC-CCCEECT-TTTT
T ss_pred             CccEEECCCC-cccccCHh-----HhccccCCcEEECCCC-cCCccCH--HHccCCcCCCEEECCCC-ccCccCh-hhhc
Confidence            4555555555 45544322     2344555555555553 4443321  12344555555555553 3443332 3344


Q ss_pred             cCCCCcEEEEcc
Q 036689          129 CLPRLERIAVIN  140 (595)
Q Consensus       129 ~l~~L~~L~l~~  140 (595)
                      ++++|++|++++
T Consensus        98 ~l~~L~~L~l~~  109 (276)
T 2z62_A           98 GLSSLQKLVAVE  109 (276)
T ss_dssp             TCTTCCEEECTT
T ss_pred             CCccccEEECCC
Confidence            455555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.51  E-value=3.2e-13  Score=132.95  Aligned_cols=199  Identities=21%  Similarity=0.192  Sum_probs=133.3

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  300 (595)
                      .+++++.+++++++++.+     |..+   .++++.|+++++ .++.+.+ ..+..+++|++|+++++. ++.++..  .
T Consensus         8 ~l~~l~~l~~~~~~l~~i-----p~~~---~~~l~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~--~   74 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTAL-----PPDL---PKDTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVD--G   74 (290)
T ss_dssp             CSTTCCEEECTTSCCSSC-----CSCC---CTTCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTSC-CCEEECC--S
T ss_pred             ccCCccEEECCCCCCCcC-----CCCC---CCCCCEEEcCCC-cCCccCH-HHhhcCCCCCEEECCCCc-cCcccCC--C
Confidence            578899999999888877     7654   578999999976 5666544 356889999999999998 8887652  1


Q ss_pred             CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689          301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP  380 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  380 (595)
                              .+++|++|+++++ .+..++...  ..+++|+.|+++++. ++.++.                       ..
T Consensus        75 --------~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~L~~L~l~~N~-l~~l~~-----------------------~~  119 (290)
T 1p9a_G           75 --------TLPVLGTLDLSHN-QLQSLPLLG--QTLPALTVLDVSFNR-LTSLPL-----------------------GA  119 (290)
T ss_dssp             --------CCTTCCEEECCSS-CCSSCCCCT--TTCTTCCEEECCSSC-CCCCCS-----------------------ST
T ss_pred             --------CCCcCCEEECCCC-cCCcCchhh--ccCCCCCEEECCCCc-CcccCH-----------------------HH
Confidence                    2899999999985 466555432  337889999998763 555554                       33


Q ss_pred             CccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcc
Q 036689          381 EKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTN  460 (595)
Q Consensus       381 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~  460 (595)
                      +..+++|++|++++|....+..+.  ...+++|+.|++          +.+.+..+++..+..+++|+.|++++ +.++.
T Consensus       120 ~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L----------~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~  186 (290)
T 1p9a_G          120 LRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSL----------ANNNLTELPAGLLNGLENLDTLLLQE-NSLYT  186 (290)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTT--TTTCTTCCEEEC----------TTSCCSCCCTTTTTTCTTCCEEECCS-SCCCC
T ss_pred             HcCCCCCCEEECCCCCCCccChhh--cccccCCCEEEC----------CCCcCCccCHHHhcCcCCCCEEECCC-CcCCc
Confidence            567888999999988755432221  124556666666          33445555554455566666666666 44555


Q ss_pred             cccchHHhhcccccEEEEcCcc
Q 036689          461 LVASSAAQSLVALVKMQVFGCR  482 (595)
Q Consensus       461 ~~~~~~~~~l~~L~~L~l~~c~  482 (595)
                      ++. . +...+.|+.|++.+++
T Consensus       187 ip~-~-~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          187 IPK-G-FFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCT-T-TTTTCCCSEEECCSCC
T ss_pred             cCh-h-hcccccCCeEEeCCCC
Confidence            432 2 2344566666666544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.50  E-value=1.4e-14  Score=146.16  Aligned_cols=108  Identities=8%  Similarity=0.038  Sum_probs=68.2

Q ss_pred             CCCcEEEcccCCCceEecCCCCCCCcCCcC--CCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchh
Q 036689           48 LQLKHLHVQNNPDFMCIVDSKERVPLDDAF--PILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLS  125 (595)
Q Consensus        48 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~  125 (595)
                      ..++.++++++ .+.   +.     ....+  ++++.|++.++ .+.....   .+..+++|++|++++|. ++......
T Consensus        47 ~~~~~l~l~~~-~~~---~~-----~~~~~~~~~l~~L~l~~n-~l~~~~~---~~~~~~~L~~L~L~~~~-l~~~~~~~  112 (336)
T 2ast_B           47 SLWQTLDLTGK-NLH---PD-----VTGRLLSQGVIAFRCPRS-FMDQPLA---EHFSPFRVQHMDLSNSV-IEVSTLHG  112 (336)
T ss_dssp             TTSSEEECTTC-BCC---HH-----HHHHHHHTTCSEEECTTC-EECSCCC---SCCCCBCCCEEECTTCE-ECHHHHHH
T ss_pred             hhheeeccccc-cCC---HH-----HHHhhhhccceEEEcCCc-cccccch---hhccCCCCCEEEccCCC-cCHHHHHH
Confidence            34788888876 333   11     23344  78999999985 5555422   25678999999999974 55431226


Q ss_pred             hhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689          126 AAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT  179 (595)
Q Consensus       126 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  179 (595)
                      .+..+++|++|++++|......+          ..+..+++|++|+++++..+.
T Consensus       113 ~~~~~~~L~~L~L~~~~l~~~~~----------~~l~~~~~L~~L~L~~~~~l~  156 (336)
T 2ast_B          113 ILSQCSKLQNLSLEGLRLSDPIV----------NTLAKNSNLVRLNLSGCSGFS  156 (336)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHH----------HHHTTCTTCSEEECTTCBSCC
T ss_pred             HHhhCCCCCEEeCcCcccCHHHH----------HHHhcCCCCCEEECCCCCCCC
Confidence            77889999999999875322221          122335666666666664443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.50  E-value=3.1e-14  Score=141.97  Aligned_cols=230  Identities=19%  Similarity=0.185  Sum_probs=146.1

Q ss_pred             ccEEEeccCCCCc-ccccccc-----ccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccc
Q 036689           24 VEYLCLDKSQDVK-NVLFDLD-----REGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQD   97 (595)
Q Consensus        24 L~~L~L~~~~~~~-~~~~~~~-----~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~   97 (595)
                      ++.|+++++.... .++....     ...+++|++|++++| .++...+...   +...+++|++|+++++ .++..   
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~---  136 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPL---LEATGPDLNILNLRNV-SWATR---  136 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCS---SSCCSCCCSEEEEESC-BCSSS---
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHH---HHhcCCCccEEEccCC-CCcch---
Confidence            7788887766522 1211110     015889999999888 5653322210   1267888999999985 66655   


Q ss_pred             cccccCC-----CCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc--ccccccceE
Q 036689           98 RLSVQSF-----NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK--IEFGQLSTL  170 (595)
Q Consensus        98 ~~~~~~l-----~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~--~~~~~L~~L  170 (595)
                      +..++.+     ++|++|+++++ .++..++ ..++++++|++|++++|.....++..        ...  ..+++|+.|
T Consensus       137 ~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~--------~~~~~~~l~~L~~L  206 (312)
T 1wwl_A          137 DAWLAELQQWLKPGLKVLSIAQA-HSLNFSC-EQVRVFPALSTLDLSDNPELGERGLI--------SALCPLKFPTLQVL  206 (312)
T ss_dssp             SSHHHHHHTTCCTTCCEEEEESC-SCCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHH--------HHSCTTSCTTCCEE
T ss_pred             hHHHHHHHHhhcCCCcEEEeeCC-CCccchH-HHhccCCCCCEEECCCCCcCcchHHH--------HHHHhccCCCCCEE
Confidence            2224444     88999999985 6676654 56778899999999886644321100        011  357888888


Q ss_pred             ecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCcccccc
Q 036689          171 CLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLC  250 (595)
Q Consensus       171 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~  250 (595)
                      +++++. +..++..                              .......+++|++|++++|.++...    |...+..
T Consensus       207 ~L~~N~-l~~~~~~------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~  251 (312)
T 1wwl_A          207 ALRNAG-METPSGV------------------------------CSALAAARVQLQGLDLSHNSLRDAA----GAPSCDW  251 (312)
T ss_dssp             ECTTSC-CCCHHHH------------------------------HHHHHHTTCCCSEEECTTSCCCSSC----CCSCCCC
T ss_pred             ECCCCc-CcchHHH------------------------------HHHHHhcCCCCCEEECCCCcCCccc----chhhhhh
Confidence            888763 2211100                              0000124689999999999887652    1111135


Q ss_pred             CCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689          251 FQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       251 l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  322 (595)
                      +++|++|+++++ .++.++.. + .  ++|++|+++++. +++++.  ..        .+++|++|++++++
T Consensus       252 l~~L~~L~Ls~N-~l~~ip~~-~-~--~~L~~L~Ls~N~-l~~~p~--~~--------~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          252 PSQLNSLNLSFT-GLKQVPKG-L-P--AKLSVLDLSYNR-LDRNPS--PD--------ELPQVGNLSLKGNP  307 (312)
T ss_dssp             CTTCCEEECTTS-CCSSCCSS-C-C--SEEEEEECCSSC-CCSCCC--TT--------TSCEEEEEECTTCT
T ss_pred             cCCCCEEECCCC-ccChhhhh-c-c--CCceEEECCCCC-CCCChh--Hh--------hCCCCCEEeccCCC
Confidence            789999999976 56665432 2 2  789999999997 887743  22        28999999999854

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.49  E-value=1.6e-13  Score=133.92  Aligned_cols=224  Identities=16%  Similarity=0.193  Sum_probs=148.4

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+.++..+++.+.... ..   .....+++|+.|.+.++ .++.+.       ....+++|++|+++++ .++.+    .
T Consensus        17 ~~~~l~~l~l~~~~~~-~~---~~~~~l~~L~~L~l~~~-~i~~~~-------~l~~l~~L~~L~l~~n-~l~~~----~   79 (272)
T 3rfs_A           17 AFAETIKANLKKKSVT-DA---VTQNELNSIDQIIANNS-DIKSVQ-------GIQYLPNVRYLALGGN-KLHDI----S   79 (272)
T ss_dssp             HHHHHHHHHHTCSCTT-SE---ECHHHHTTCCEEECTTS-CCCCCT-------TGGGCTTCCEEECTTS-CCCCC----G
T ss_pred             hHHHHHHHHhcCcccc-cc---cccccccceeeeeeCCC-Cccccc-------ccccCCCCcEEECCCC-CCCCc----h
Confidence            4555666666665442 22   12267888999999887 565431       3567888999999886 56654    2


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT  179 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  179 (595)
                      .+..+++|++|++++| .++.+++ ..+.++++|++|++++|. +..++..                             
T Consensus        80 ~l~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~-----------------------------  127 (272)
T 3rfs_A           80 ALKELTNLTYLILTGN-QLQSLPN-GVFDKLTNLKELVLVENQ-LQSLPDG-----------------------------  127 (272)
T ss_dssp             GGTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCTT-----------------------------
T ss_pred             hhcCCCCCCEEECCCC-ccCccCh-hHhcCCcCCCEEECCCCc-CCccCHH-----------------------------
Confidence            3678888999999885 6676654 556788888888888853 3322210                             


Q ss_pred             ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689          180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL  259 (595)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L  259 (595)
                                                         .   ...+++|++|++++|.++.+     +...+..+++|+.|++
T Consensus       128 -----------------------------------~---~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A          128 -----------------------------------V---FDKLTNLTYLNLAHNQLQSL-----PKGVFDKLTNLTELDL  164 (272)
T ss_dssp             -----------------------------------T---TTTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEEC
T ss_pred             -----------------------------------H---hccCCCCCEEECCCCccCcc-----CHHHhccCccCCEEEC
Confidence                                               0   11366788888888877655     3332256788888888


Q ss_pred             ecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCccc
Q 036689          260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPAL  339 (595)
Q Consensus       260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L  339 (595)
                      +++ .++.+++ ..++.+++|++|++++|. ++.+++..+.        .+++|+.|++.+++-.         ..++.|
T Consensus       165 ~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~--------~l~~L~~L~l~~N~~~---------~~~~~l  224 (272)
T 3rfs_A          165 SYN-QLQSLPE-GVFDKLTQLKDLRLYQNQ-LKSVPDGVFD--------RLTSLQYIWLHDNPWD---------CTCPGI  224 (272)
T ss_dssp             CSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTT--------TCTTCCEEECCSSCBC---------CCTTTT
T ss_pred             CCC-CcCccCH-HHhcCCccCCEEECCCCc-CCccCHHHHh--------CCcCCCEEEccCCCcc---------ccCcHH
Confidence            876 5666544 345788889999998887 7766553222        2788899998886521         116778


Q ss_pred             ceeeecCCCCcccccc
Q 036689          340 KLLDVSACDQVTVFDS  355 (595)
Q Consensus       340 ~~L~l~~c~~l~~l~~  355 (595)
                      +.+.+..+.....+|.
T Consensus       225 ~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          225 RYLSEWINKHSGVVRN  240 (272)
T ss_dssp             HHHHHHHHHTGGGBBC
T ss_pred             HHHHHHHHhCCCcccC
Confidence            8887776655555665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.49  E-value=9.3e-14  Score=135.60  Aligned_cols=202  Identities=16%  Similarity=0.169  Sum_probs=141.9

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+++|+.|++.++.. ..+ +.+  +.+++|++|++++| .++.+.       ....+++|++|+++++ .++.+...  
T Consensus        39 ~l~~L~~L~l~~~~i-~~~-~~l--~~l~~L~~L~l~~n-~l~~~~-------~l~~l~~L~~L~L~~n-~l~~~~~~--  103 (272)
T 3rfs_A           39 ELNSIDQIIANNSDI-KSV-QGI--QYLPNVRYLALGGN-KLHDIS-------ALKELTNLTYLILTGN-QLQSLPNG--  103 (272)
T ss_dssp             HHTTCCEEECTTSCC-CCC-TTG--GGCTTCCEEECTTS-CCCCCG-------GGTTCTTCCEEECTTS-CCCCCCTT--
T ss_pred             cccceeeeeeCCCCc-ccc-ccc--ccCCCCcEEECCCC-CCCCch-------hhcCCCCCCEEECCCC-ccCccChh--
Confidence            789999999999876 333 234  78999999999998 566431       4668899999999996 77765322  


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT  179 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  179 (595)
                      .+..+++|++|++++| .++.+++ ..+..+++|++|++++| .+..++..                             
T Consensus       104 ~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~-----------------------------  151 (272)
T 3rfs_A          104 VFDKLTNLKELVLVEN-QLQSLPD-GVFDKLTNLTYLNLAHN-QLQSLPKG-----------------------------  151 (272)
T ss_dssp             TTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-----------------------------
T ss_pred             HhcCCcCCCEEECCCC-cCCccCH-HHhccCCCCCEEECCCC-ccCccCHH-----------------------------
Confidence            2678999999999996 6776654 56788999999999986 34333210                             


Q ss_pred             ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689          180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL  259 (595)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L  259 (595)
                                                         .|   ..+++|+.|++++|+++.+     +...+..+++|+.|++
T Consensus       152 -----------------------------------~~---~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          152 -----------------------------------VF---DKLTNLTELDLSYNQLQSL-----PEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             -----------------------------------TT---TTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEEC
T ss_pred             -----------------------------------Hh---ccCccCCEEECCCCCcCcc-----CHHHhcCCccCCEEEC
Confidence                                               01   1366788888888877655     3332246788888888


Q ss_pred             ecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccC
Q 036689          260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYP  329 (595)
Q Consensus       260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~  329 (595)
                      +++ .++.+++ ..+..+++|++|++++|. +...               +|+|+.+++..+.....++.
T Consensus       189 ~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~-~~~~---------------~~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          189 YQN-QLKSVPD-GVFDRLTSLQYIWLHDNP-WDCT---------------CPGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             CSS-CCSCCCT-TTTTTCTTCCEEECCSSC-BCCC---------------TTTTHHHHHHHHHTGGGBBC
T ss_pred             CCC-cCCccCH-HHHhCCcCCCEEEccCCC-cccc---------------CcHHHHHHHHHHhCCCcccC
Confidence            875 5666544 345778888888888876 3211               67777777776443334433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.48  E-value=7.4e-13  Score=130.35  Aligned_cols=207  Identities=17%  Similarity=0.161  Sum_probs=128.8

Q ss_pred             hccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccc
Q 036689          275 GSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFD  354 (595)
Q Consensus       275 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~  354 (595)
                      ++++++++++++++. ++.+|.. .          .++++.|+++++. +..+.... ...+++|+.|+++++. ++.++
T Consensus         7 ~~l~~l~~l~~~~~~-l~~ip~~-~----------~~~l~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~   71 (290)
T 1p9a_G            7 SKVASHLEVNCDKRN-LTALPPD-L----------PKDTTILHLSENL-LYTFSLAT-LMPYTRLTQLNLDRAE-LTKLQ   71 (290)
T ss_dssp             ECSTTCCEEECTTSC-CSSCCSC-C----------CTTCCEEECTTSC-CSEEEGGG-GTTCTTCCEEECTTSC-CCEEE
T ss_pred             cccCCccEEECCCCC-CCcCCCC-C----------CCCCCEEEcCCCc-CCccCHHH-hhcCCCCCEEECCCCc-cCccc
Confidence            566677777777665 6665541 1          4566777777643 33332211 1125666666666543 33333


Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCcccc
Q 036689          355 SELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLL  434 (595)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~  434 (595)
                      .                         .+.+++|++|++++|..                                    .
T Consensus        72 ~-------------------------~~~l~~L~~L~Ls~N~l------------------------------------~   90 (290)
T 1p9a_G           72 V-------------------------DGTLPVLGTLDLSHNQL------------------------------------Q   90 (290)
T ss_dssp             C-------------------------CSCCTTCCEEECCSSCC------------------------------------S
T ss_pred             C-------------------------CCCCCcCCEEECCCCcC------------------------------------C
Confidence            3                         13456666666666542                                    2


Q ss_pred             ccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccc
Q 036689          435 ILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLD  514 (595)
Q Consensus       435 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~  514 (595)
                      .++. .+..+++|+.|++++ +.++.+++ ..+..+++|++|+++++. ++.++.....       .+++|+.|+++++ 
T Consensus        91 ~l~~-~~~~l~~L~~L~l~~-N~l~~l~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-------~l~~L~~L~L~~N-  158 (290)
T 1p9a_G           91 SLPL-LGQTLPALTVLDVSF-NRLTSLPL-GALRGLGELQELYLKGNE-LKTLPPGLLT-------PTPKLEKLSLANN-  158 (290)
T ss_dssp             SCCC-CTTTCTTCCEEECCS-SCCCCCCS-STTTTCTTCCEEECTTSC-CCCCCTTTTT-------TCTTCCEEECTTS-
T ss_pred             cCch-hhccCCCCCEEECCC-CcCcccCH-HHHcCCCCCCEEECCCCC-CCccChhhcc-------cccCCCEEECCCC-
Confidence            2222 455677788888887 56666633 345677888888888775 6666554332       3778888888884 


Q ss_pred             cccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCCCccccCch
Q 036689          515 SLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGAPCWDGDL  572 (595)
Q Consensus       515 ~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~~~~~~~~~  572 (595)
                      .++.++.+.+. .+++|++|+++++ +++.+|.++...++|+.+.+.+|. |.++.++
T Consensus       159 ~l~~l~~~~~~-~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np-~~C~c~~  213 (290)
T 1p9a_G          159 NLTELPAGLLN-GLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP-WLCNCEI  213 (290)
T ss_dssp             CCSCCCTTTTT-TCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC-BCCSGGG
T ss_pred             cCCccCHHHhc-CcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC-ccCcCcc
Confidence            67777765532 4788888888886 677888888778888888887543 5555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.47  E-value=1.2e-12  Score=127.52  Aligned_cols=199  Identities=19%  Similarity=0.181  Sum_probs=116.2

Q ss_pred             ccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCC
Q 036689          224 NLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQ  303 (595)
Q Consensus       224 ~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  303 (595)
                      ..+.+++++++++.+     |..+   .+++++|+++++ .++.+++ ..+.++++|++|+++++. ++.++...+..  
T Consensus        17 ~~~~l~~~~~~l~~i-----p~~~---~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~--   83 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAI-----PSNI---PADTKKLDLQSN-KLSSLPS-KAFHRLTKLRLLYLNDNK-LQTLPAGIFKE--   83 (270)
T ss_dssp             TTTEEECTTSCCSSC-----CSCC---CTTCSEEECCSS-CCSCCCT-TSSSSCTTCCEEECCSSC-CSCCCTTTTSS--
T ss_pred             CCCEEEccCCCCCcc-----CCCC---CCCCCEEECcCC-CCCeeCH-HHhcCCCCCCEEECCCCc-cCeeChhhhcC--
Confidence            467788888777766     6543   467899999875 5666543 245788889999998887 77766533222  


Q ss_pred             CCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCcc
Q 036689          304 VPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKV  383 (595)
Q Consensus       304 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  383 (595)
                            +++|++|+++++. +..++... ...+++|+.|+++++. ++.++.                       ..++.
T Consensus        84 ------l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-----------------------~~~~~  131 (270)
T 2o6q_A           84 ------LKNLETLWVTDNK-LQALPIGV-FDQLVNLAELRLDRNQ-LKSLPP-----------------------RVFDS  131 (270)
T ss_dssp             ------CTTCCEEECCSSC-CCCCCTTT-TTTCSSCCEEECCSSC-CCCCCT-----------------------TTTTT
T ss_pred             ------CCCCCEEECCCCc-CCcCCHhH-cccccCCCEEECCCCc-cCeeCH-----------------------HHhCc
Confidence                  7888888888854 55544332 1236788888887764 444444                       22456


Q ss_pred             CCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccccc
Q 036689          384 FPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVA  463 (595)
Q Consensus       384 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~  463 (595)
                      +++|++|++++|....+...  ....+++|+.|++.          .+.+..+++..+..+++|+.|+++++ .++.++ 
T Consensus       132 l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~----------~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-  197 (270)
T 2o6q_A          132 LTKLTYLSLGYNELQSLPKG--VFDKLTSLKELRLY----------NNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVP-  197 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTT--TTTTCTTCCEEECC----------SSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCC-
T ss_pred             CcCCCEEECCCCcCCccCHh--HccCCcccceeEec----------CCcCcEeChhHhccCCCcCEEECCCC-cCCcCC-
Confidence            78888888888764432211  11234455555552          22344444433444555555555552 344432 


Q ss_pred             chHHhhcccccEEEEcCc
Q 036689          464 SSAAQSLVALVKMQVFGC  481 (595)
Q Consensus       464 ~~~~~~l~~L~~L~l~~c  481 (595)
                      ...+..+++|++|+++++
T Consensus       198 ~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          198 EGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             TTTTTTCTTCCEEECCSS
T ss_pred             HHHhccccCCCEEEecCC
Confidence            222344555555555444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.45  E-value=9.4e-13  Score=130.89  Aligned_cols=79  Identities=13%  Similarity=0.168  Sum_probs=37.1

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      ..+++|++|+++++ .++.++       ....+++|++|+++++ .+..+.   . +..+++|++|++++| .++.+   
T Consensus        38 ~~l~~L~~L~l~~~-~i~~l~-------~~~~l~~L~~L~L~~n-~i~~~~---~-~~~l~~L~~L~L~~n-~l~~~---  100 (308)
T 1h6u_A           38 ADLDGITTLSAFGT-GVTTIE-------GVQYLNNLIGLELKDN-QITDLA---P-LKNLTKITELELSGN-PLKNV---  100 (308)
T ss_dssp             HHHHTCCEEECTTS-CCCCCT-------TGGGCTTCCEEECCSS-CCCCCG---G-GTTCCSCCEEECCSC-CCSCC---
T ss_pred             HHcCCcCEEEeeCC-CccCch-------hhhccCCCCEEEccCC-cCCCCh---h-HccCCCCCEEEccCC-cCCCc---
Confidence            34555555555554 333321       2334555555555553 343331   1 445555555555553 34433   


Q ss_pred             hhhhcCCCCcEEEEcc
Q 036689          125 SAAKCLPRLERIAVIN  140 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~  140 (595)
                      +.+..+++|++|++++
T Consensus       101 ~~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A          101 SAIAGLQSIKTLDLTS  116 (308)
T ss_dssp             GGGTTCTTCCEEECTT
T ss_pred             hhhcCCCCCCEEECCC
Confidence            2344555555555555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.44  E-value=1.1e-12  Score=130.47  Aligned_cols=190  Identities=15%  Similarity=0.219  Sum_probs=121.1

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+++|++|++.++.. ..+ +.+  ..+++|++|++++| .++.+.       .+..+++|++|+++++ .++.+.    
T Consensus        39 ~l~~L~~L~l~~~~i-~~l-~~~--~~l~~L~~L~L~~n-~i~~~~-------~~~~l~~L~~L~L~~n-~l~~~~----  101 (308)
T 1h6u_A           39 DLDGITTLSAFGTGV-TTI-EGV--QYLNNLIGLELKDN-QITDLA-------PLKNLTKITELELSGN-PLKNVS----  101 (308)
T ss_dssp             HHHTCCEEECTTSCC-CCC-TTG--GGCTTCCEEECCSS-CCCCCG-------GGTTCCSCCEEECCSC-CCSCCG----
T ss_pred             HcCCcCEEEeeCCCc-cCc-hhh--hccCCCCEEEccCC-cCCCCh-------hHccCCCCCEEEccCC-cCCCch----
Confidence            577888888887765 333 233  67888888888877 565442       2556778888888885 565541    


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT  179 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  179 (595)
                      .+..+++|++|++++| .+++++   .+..+++|++|++++|. +..++                               
T Consensus       102 ~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~-------------------------------  145 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTST-QITDVT---PLAGLSNLQVLYLDLNQ-ITNIS-------------------------------  145 (308)
T ss_dssp             GGTTCTTCCEEECTTS-CCCCCG---GGTTCTTCCEEECCSSC-CCCCG-------------------------------
T ss_pred             hhcCCCCCCEEECCCC-CCCCch---hhcCCCCCCEEECCCCc-cCcCc-------------------------------
Confidence            3667788888888885 566553   36677888888887743 22211                               


Q ss_pred             ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689          180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL  259 (595)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L  259 (595)
                                                            ....+++|+.|++++|.++.+     +. + ..+++|+.|++
T Consensus       146 --------------------------------------~l~~l~~L~~L~l~~n~l~~~-----~~-l-~~l~~L~~L~l  180 (308)
T 1h6u_A          146 --------------------------------------PLAGLTNLQYLSIGNAQVSDL-----TP-L-ANLSKLTTLKA  180 (308)
T ss_dssp             --------------------------------------GGGGCTTCCEEECCSSCCCCC-----GG-G-TTCTTCCEEEC
T ss_pred             --------------------------------------cccCCCCccEEEccCCcCCCC-----hh-h-cCCCCCCEEEC
Confidence                                                  011356777777777766654     22 1 45777777777


Q ss_pred             ecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689          260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  322 (595)
                      +++ .++++++   +..+++|++|++++|. ++++++  ..        .+++|+.|++++++
T Consensus       181 ~~n-~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~~--l~--------~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          181 DDN-KISDISP---LASLPNLIEVHLKNNQ-ISDVSP--LA--------NTSNLFIVTLTNQT  228 (308)
T ss_dssp             CSS-CCCCCGG---GGGCTTCCEEECTTSC-CCBCGG--GT--------TCTTCCEEEEEEEE
T ss_pred             CCC-ccCcChh---hcCCCCCCEEEccCCc-cCcccc--cc--------CCCCCCEEEccCCe
Confidence            765 4555433   4677777777777776 665543  11        16777777777644

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.38  E-value=1.3e-12  Score=130.00  Aligned_cols=118  Identities=14%  Similarity=0.070  Sum_probs=80.4

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+++|++|+++++...+..+..+....+++|++|++++| .++...+... ......+++|++|+++++ .+..+..  .
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~-~~~~~~~~~L~~L~Ls~n-~l~~~~~--~  163 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLA-ELQQWLKPGLKVLSIAQA-HSPAFSC--E  163 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHH-HHHTTBCSCCCEEEEECC-SSCCCCT--T
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhH-HHHhhhccCCCEEEeeCC-CcchhhH--H
Confidence            457799999999987554444332268999999999998 5553211000 012236899999999996 6665532  3


Q ss_pred             cccCCCCccEEEecCCCCccc--ccchhhhhcCCCCcEEEEcccC
Q 036689          100 SVQSFNELKTIRVELCDQLSN--IFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~--~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      .+..+++|++|++++|.....  ++....+..+++|++|++++|.
T Consensus       164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred             HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence            367899999999999643321  2222334689999999999964

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.35  E-value=8.9e-12  Score=119.93  Aligned_cols=85  Identities=20%  Similarity=0.303  Sum_probs=47.9

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD  301 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  301 (595)
                      +++|++|++++|.++.+     +...+..+++|+.|+++++ .++.+++ ..++.+++|++|+++++. ++.++...+..
T Consensus       106 l~~L~~L~L~~N~l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~  177 (251)
T 3m19_A          106 LTQLDKLYLGGNQLKSL-----PSGVFDRLTKLKELRLNTN-QLQSIPA-GAFDKLTNLQTLSLSTNQ-LQSVPHGAFDR  177 (251)
T ss_dssp             CTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTTT
T ss_pred             cCCCCEEEcCCCcCCCc-----ChhHhccCCcccEEECcCC-cCCccCH-HHcCcCcCCCEEECCCCc-CCccCHHHHhC
Confidence            45566666666655544     3322244666777777654 4555433 234666777777777765 66555422221


Q ss_pred             CCCCCCcCCCcccEEeecCCC
Q 036689          302 DQVPPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       302 ~~~~~~~~l~~L~~L~L~~~~  322 (595)
                              +++|+.|++.+++
T Consensus       178 --------l~~L~~L~l~~N~  190 (251)
T 3m19_A          178 --------LGKLQTITLFGNQ  190 (251)
T ss_dssp             --------CTTCCEEECCSCC
T ss_pred             --------CCCCCEEEeeCCc
Confidence                    6667777776644

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.33  E-value=1.3e-11  Score=118.77  Aligned_cols=177  Identities=18%  Similarity=0.213  Sum_probs=120.4

Q ss_pred             ccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccc
Q 036689           22 KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSV  101 (595)
Q Consensus        22 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  101 (595)
                      .+.+++++.++.. ..++..+    .+++++|+++++ .++.+.+.     .+..+++|++|+++++ .++.+..  ..+
T Consensus        14 ~~~~~l~~~~~~l-~~~p~~~----~~~l~~L~L~~n-~l~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~~--~~~   79 (251)
T 3m19_A           14 EGKKEVDCQGKSL-DSVPSGI----PADTEKLDLQST-GLATLSDA-----TFRGLTKLTWLNLDYN-QLQTLSA--GVF   79 (251)
T ss_dssp             GGGTEEECTTCCC-SSCCSCC----CTTCCEEECTTS-CCCCCCTT-----TTTTCTTCCEEECTTS-CCCCCCT--TTT
T ss_pred             CCCeEEecCCCCc-cccCCCC----CCCCCEEEccCC-CcCccCHh-----HhcCcccCCEEECCCC-cCCccCH--hHh
Confidence            4567888877765 4554433    368999999988 67666433     4667889999999995 6766532  236


Q ss_pred             cCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcccc
Q 036689          102 QSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSF  181 (595)
Q Consensus       102 ~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  181 (595)
                      ..+++|++|+++++ .++.+++ ..+..+++|++|++++| .+..++..                               
T Consensus        80 ~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~-------------------------------  125 (251)
T 3m19_A           80 DDLTELGTLGLANN-QLASLPL-GVFDHLTQLDKLYLGGN-QLKSLPSG-------------------------------  125 (251)
T ss_dssp             TTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTT-------------------------------
T ss_pred             ccCCcCCEEECCCC-cccccCh-hHhcccCCCCEEEcCCC-cCCCcChh-------------------------------
Confidence            78899999999994 6776654 66788999999999884 44433210                               


Q ss_pred             ccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEec
Q 036689          182 CCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRK  261 (595)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~  261 (595)
                                                       .|   ..+++|++|++++|.++.+     |...+..+++|+.|++++
T Consensus       126 ---------------------------------~~---~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A          126 ---------------------------------VF---DRLTKLKELRLNTNQLQSI-----PAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             ---------------------------------TT---TTCTTCCEEECCSSCCCCC-----CTTTTTTCTTCCEEECCS
T ss_pred             ---------------------------------Hh---ccCCcccEEECcCCcCCcc-----CHHHcCcCcCCCEEECCC
Confidence                                             01   1356777777777777655     332224677888888876


Q ss_pred             CCCCccccchhhhhccCCCcEEEeeccc
Q 036689          262 CPKLKYIFSASMLGSFEHLQHLEIRYCK  289 (595)
Q Consensus       262 c~~l~~l~~~~~~~~l~~L~~L~l~~c~  289 (595)
                      + .++.+++ ..+..+++|++|+++++.
T Consensus       165 N-~l~~~~~-~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          165 N-QLQSVPH-GAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             S-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred             C-cCCccCH-HHHhCCCCCCEEEeeCCc
Confidence            4 5555543 345777888888888776

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.30  E-value=2.3e-13  Score=140.00  Aligned_cols=140  Identities=13%  Similarity=0.108  Sum_probs=72.7

Q ss_pred             CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCcccc---chh-hhhccCCCcEEEeecccccc-----e
Q 036689          223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIF---SAS-MLGSFEHLQHLEIRYCKGLQ-----E  293 (595)
Q Consensus       223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~---~~~-~~~~l~~L~~L~l~~c~~l~-----~  293 (595)
                      ++|++|++++|.++......+...+ ..+++|+.|++++| .++...   ... .+..+++|++|++++|. ++     .
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~  235 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTF-QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSA  235 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHH-HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHH-HhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHH
Confidence            5666666666654421111111111 34667777777765 333110   011 34566777777777776 52     2


Q ss_pred             ecccccCCCCCCCCcCCCcccEEeecCCCCcccc-----cCCCccccCcccceeeecCCCCcc----ccccccccccCCC
Q 036689          294 IISKEGADDQVPPNFVFPQVTILRLVGLPELKCL-----YPGMHTSEWPALKLLDVSACDQVT----VFDSELFSFCESS  364 (595)
Q Consensus       294 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~-----~~~~~~~~~~~L~~L~l~~c~~l~----~l~~~~~~~~~~~  364 (595)
                      ++. ...        .+++|++|++++|. +...     +.......+++|+.|++++|.--.    .+|.         
T Consensus       236 l~~-~l~--------~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~---------  296 (386)
T 2ca6_A          236 LAI-ALK--------SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT---------  296 (386)
T ss_dssp             HHH-HGG--------GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH---------
T ss_pred             HHH-HHc--------cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH---------
Confidence            221 111        26777777777754 3221     111000126778888888775433    2554         


Q ss_pred             CCCCCCCCCCCCCCCcCccCCCcceEeccCCCCe
Q 036689          365 EEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIR  398 (595)
Q Consensus       365 ~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~  398 (595)
                                    .+...+++|++|++++|+..
T Consensus       297 --------------~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          297 --------------VIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             --------------HHHHHCTTCCEEECTTSBSC
T ss_pred             --------------HHHhcCCCceEEEccCCcCC
Confidence                          22245788888888888644

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.29  E-value=1.2e-11  Score=123.09  Aligned_cols=143  Identities=19%  Similarity=0.146  Sum_probs=89.3

Q ss_pred             CCccceeecccccceeecccCCCcccc-ccCCCccEEEEecCCCCccccc---hhhhhccCCCcEEEeecccccceeccc
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMF-LCFQNLTRLILRKCPKLKYIFS---ASMLGSFEHLQHLEIRYCKGLQEIISK  297 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~-~~l~~L~~L~L~~c~~l~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~  297 (595)
                      +++|++|++++|.+....    |..++ ..+++|+.|+++++. ++...+   ...+..+++|++|++++|. ++.++..
T Consensus        90 ~~~L~~L~l~~n~l~~~~----~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~  163 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTM----PPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCE  163 (310)
T ss_dssp             HSCCCEEEEESCCCBSCC----CCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTT
T ss_pred             cCceeEEEeeCCEeccch----hhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHH
Confidence            567999999988776542    22211 357889999999864 433211   1123468899999999887 7766653


Q ss_pred             ccCCCCCCCCcCCCcccEEeecCCCCccc--ccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCC
Q 036689          298 EGADDQVPPNFVFPQVTILRLVGLPELKC--LYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQ  375 (595)
Q Consensus       298 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~--~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~  375 (595)
                      .+..        +++|++|+++++.....  ++.......+++|++|++++|. ++.++...                  
T Consensus       164 ~~~~--------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~------------------  216 (310)
T 4glp_A          164 QVRA--------FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVC------------------  216 (310)
T ss_dssp             SCCC--------CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHH------------------
T ss_pred             Hhcc--------CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHH------------------
Confidence            3322        88899999998764332  2222222337888888888874 33332200                  


Q ss_pred             CCCCcCccCCCcceEeccCCCCee
Q 036689          376 PLFLPEKVFPNLEELGLDGKDIRM  399 (595)
Q Consensus       376 ~l~~~~~~l~~L~~L~l~~~~~~~  399 (595)
                        ..+++.+++|++|++++|....
T Consensus       217 --~~l~~~l~~L~~L~Ls~N~l~~  238 (310)
T 4glp_A          217 --AALAAAGVQPHSLDLSHNSLRA  238 (310)
T ss_dssp             --HHHHHHTCCCSSEECTTSCCCC
T ss_pred             --HHHHhcCCCCCEEECCCCCCCc
Confidence              0113467888888888887544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.28  E-value=2.5e-11  Score=119.50  Aligned_cols=80  Identities=16%  Similarity=0.213  Sum_probs=52.6

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      ..+++|++|++++| .++.+.       ....+++|++|+++++ .++.+.   . +..+++|++|++++| .++.+   
T Consensus        43 ~~l~~L~~L~l~~~-~i~~~~-------~~~~l~~L~~L~L~~n-~l~~~~---~-l~~l~~L~~L~l~~n-~l~~~---  105 (291)
T 1h6t_A           43 NELNSIDQIIANNS-DIKSVQ-------GIQYLPNVTKLFLNGN-KLTDIK---P-LANLKNLGWLFLDEN-KVKDL---  105 (291)
T ss_dssp             HHHHTCCEEECTTS-CCCCCT-------TGGGCTTCCEEECCSS-CCCCCG---G-GTTCTTCCEEECCSS-CCCCG---
T ss_pred             hhcCcccEEEccCC-CcccCh-------hHhcCCCCCEEEccCC-ccCCCc---c-cccCCCCCEEECCCC-cCCCC---
Confidence            56777888888777 555441       3456777777777775 555542   1 567777777777774 55654   


Q ss_pred             hhhhcCCCCcEEEEccc
Q 036689          125 SAAKCLPRLERIAVINC  141 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c  141 (595)
                      +.+..+++|++|++++|
T Consensus       106 ~~l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A          106 SSLKDLKKLKSLSLEHN  122 (291)
T ss_dssp             GGGTTCTTCCEEECTTS
T ss_pred             hhhccCCCCCEEECCCC
Confidence            33667777777777774

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.28  E-value=3.3e-11  Score=118.60  Aligned_cols=172  Identities=21%  Similarity=0.270  Sum_probs=127.5

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+++|++|++.++.. ..+ +.+  +.+++|++|++++| .++.+.       ....+++|++|+++++ .++.+    .
T Consensus        44 ~l~~L~~L~l~~~~i-~~~-~~~--~~l~~L~~L~L~~n-~l~~~~-------~l~~l~~L~~L~l~~n-~l~~~----~  106 (291)
T 1h6t_A           44 ELNSIDQIIANNSDI-KSV-QGI--QYLPNVTKLFLNGN-KLTDIK-------PLANLKNLGWLFLDEN-KVKDL----S  106 (291)
T ss_dssp             HHHTCCEEECTTSCC-CCC-TTG--GGCTTCCEEECCSS-CCCCCG-------GGTTCTTCCEEECCSS-CCCCG----G
T ss_pred             hcCcccEEEccCCCc-ccC-hhH--hcCCCCCEEEccCC-ccCCCc-------ccccCCCCCEEECCCC-cCCCC----h
Confidence            789999999999876 344 334  78999999999998 676552       2568899999999996 67664    2


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT  179 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  179 (595)
                      .+..+++|++|++++| .++++   +.+..+++|++|++++|. +..++                               
T Consensus       107 ~l~~l~~L~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n~-l~~~~-------------------------------  150 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHN-GISDI---NGLVHLPQLESLYLGNNK-ITDIT-------------------------------  150 (291)
T ss_dssp             GGTTCTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSSC-CCCCG-------------------------------
T ss_pred             hhccCCCCCEEECCCC-cCCCC---hhhcCCCCCCEEEccCCc-CCcch-------------------------------
Confidence            3788999999999996 67765   457789999999999853 22210                               


Q ss_pred             ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689          180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL  259 (595)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L  259 (595)
                                                            ....+++|+.|++++|.++.+     +. + ..+++|+.|++
T Consensus       151 --------------------------------------~l~~l~~L~~L~L~~N~l~~~-----~~-l-~~l~~L~~L~L  185 (291)
T 1h6t_A          151 --------------------------------------VLSRLTKLDTLSLEDNQISDI-----VP-L-AGLTKLQNLYL  185 (291)
T ss_dssp             --------------------------------------GGGGCTTCSEEECCSSCCCCC-----GG-G-TTCTTCCEEEC
T ss_pred             --------------------------------------hhccCCCCCEEEccCCccccc-----hh-h-cCCCccCEEEC
Confidence                                                  011367788888888877665     22 2 46888888888


Q ss_pred             ecCCCCccccchhhhhccCCCcEEEeeccccccee
Q 036689          260 RKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEI  294 (595)
Q Consensus       260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~  294 (595)
                      +++ .+++++.   +..+++|++|+++++. +...
T Consensus       186 ~~N-~i~~l~~---l~~l~~L~~L~l~~n~-i~~~  215 (291)
T 1h6t_A          186 SKN-HISDLRA---LAGLKNLDVLELFSQE-CLNK  215 (291)
T ss_dssp             CSS-CCCBCGG---GTTCTTCSEEEEEEEE-EECC
T ss_pred             CCC-cCCCChh---hccCCCCCEEECcCCc-ccCC
Confidence            875 5666432   5778888888888887 5543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.27  E-value=6.6e-13  Score=135.31  Aligned_cols=119  Identities=10%  Similarity=-0.056  Sum_probs=66.7

Q ss_pred             cccccccccccEEEeccCCCCcccccc---ccccccC-CCcEEEcccCCCceEecCCCCCCCcCCc-----CCCccEEec
Q 036689           15 SKKLQGIKDVEYLCLDKSQDVKNVLFD---LDREGFL-QLKHLHVQNNPDFMCIVDSKERVPLDDA-----FPILESLNL   85 (595)
Q Consensus        15 ~~~~~~l~~L~~L~L~~~~~~~~~~~~---~~~~~l~-~L~~L~L~~~~~l~~i~~~~~~~~~~~~-----~~~L~~L~l   85 (595)
                      ++.++..++|++|++++|.. +.....   -....++ +|++|+|++| .++.....     .+..     +++|++|++
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~-----~l~~~l~~~~~~L~~L~L   87 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNL-YSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSD-----ELVQILAAIPANVTSLNL   87 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHH-----HHHHHHHTSCTTCCEEEC
T ss_pred             HHHHhCCCCceEEEccCCCC-ChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHH-----HHHHHHhccCCCccEEEC
Confidence            33333556688888888875 333221   0115566 7888888887 55532111     1122     278888888


Q ss_pred             cCccCcccccccc--ccccCC-CCccEEEecCCCCcccccchhh---hhc-CCCCcEEEEcccC
Q 036689           86 YNLIKLERICQDR--LSVQSF-NELKTIRVELCDQLSNIFLLSA---AKC-LPRLERIAVINCR  142 (595)
Q Consensus        86 ~~~~~l~~~~~~~--~~~~~l-~~L~~L~L~~c~~l~~~~~~~~---~~~-l~~L~~L~l~~c~  142 (595)
                      +++ .+.......  ..+..+ ++|++|++++| .+++.+....   +.. .++|++|++++|.
T Consensus        88 s~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           88 SGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             CSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             cCC-cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            886 455431110  002233 67888888885 4665543221   223 3578888888753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.25  E-value=1.1e-12  Score=133.73  Aligned_cols=108  Identities=13%  Similarity=0.007  Sum_probs=56.5

Q ss_pred             EEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCC-CccEEeccCccCccccccccccccC--
Q 036689           27 LCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFP-ILESLNLYNLIKLERICQDRLSVQS--  103 (595)
Q Consensus        27 L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~--  103 (595)
                      ++++.+...+ ..+.+ ....++|++|+|++| .++..... .....+..++ +|++|+++++ .+......  .+..  
T Consensus         3 ~~ls~n~~~~-~~~~~-~~~~~~L~~L~Ls~n-~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~--~l~~~l   75 (362)
T 3goz_A            3 YKLTLHPGSN-PVEEF-TSIPHGVTSLDLSLN-NLYSISTV-ELIQAFANTPASVTSLNLSGN-SLGFKNSD--ELVQIL   75 (362)
T ss_dssp             EECCCCTTCC-HHHHH-HTSCTTCCEEECTTS-CGGGSCHH-HHHHHHHTCCTTCCEEECCSS-CGGGSCHH--HHHHHH
T ss_pred             cccccccchH-HHHHH-HhCCCCceEEEccCC-CCChHHHH-HHHHHHHhCCCceeEEECcCC-CCCHHHHH--HHHHHH
Confidence            4455554432 22333 144455888888887 45533210 0001234456 7888888875 55543111  1222  


Q ss_pred             ---CCCccEEEecCCCCcccccchh---hhhcC-CCCcEEEEcccC
Q 036689          104 ---FNELKTIRVELCDQLSNIFLLS---AAKCL-PRLERIAVINCR  142 (595)
Q Consensus       104 ---l~~L~~L~L~~c~~l~~~~~~~---~~~~l-~~L~~L~l~~c~  142 (595)
                         +++|++|++++| .+++..+..   .+..+ ++|++|++++|.
T Consensus        76 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           76 AAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             HTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             hccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence               277888888875 455443211   23334 677888777754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.25  E-value=5.5e-13  Score=137.19  Aligned_cols=256  Identities=14%  Similarity=0.037  Sum_probs=137.6

Q ss_pred             cccCCccceeecccccceeecccCCCccccccCCCccEEEEecC--CCCccccchhh------hhccCCCcEEEeecccc
Q 036689          219 KVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKC--PKLKYIFSASM------LGSFEHLQHLEIRYCKG  290 (595)
Q Consensus       219 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c--~~l~~l~~~~~------~~~l~~L~~L~l~~c~~  290 (595)
                      +..+++|+.|++++|.+.......++..+ ..+++|++|++++|  ..++...+..+      +..+++|++|++++|. 
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-  105 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-  105 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-
Confidence            34578899999999977654332223222 46889999999987  33333222221      3678999999999987 


Q ss_pred             cceecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCc---cccC---------cccceeeecCCCCc-ccccccc
Q 036689          291 LQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMH---TSEW---------PALKLLDVSACDQV-TVFDSEL  357 (595)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~---~~~~---------~~L~~L~l~~c~~l-~~l~~~~  357 (595)
                      ++.........    ....+++|++|++++|. +........   ...+         ++|++|++++|..- ..++.  
T Consensus       106 l~~~~~~~l~~----~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--  178 (386)
T 2ca6_A          106 FGPTAQEPLID----FLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE--  178 (386)
T ss_dssp             CCTTTHHHHHH----HHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH--
T ss_pred             CCHHHHHHHHH----HHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH--
Confidence            65411000000    01127899999999875 332111000   0012         78888888887532 12221  


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccC
Q 036689          358 FSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILL  437 (595)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~  437 (595)
                                         +...+..+++|++|++++|.....                               .+..+.
T Consensus       179 -------------------l~~~l~~~~~L~~L~L~~n~l~~~-------------------------------g~~~l~  208 (386)
T 2ca6_A          179 -------------------WAKTFQSHRLLHTVKMVQNGIRPE-------------------------------GIEHLL  208 (386)
T ss_dssp             -------------------HHHHHHHCTTCCEEECCSSCCCHH-------------------------------HHHHHH
T ss_pred             -------------------HHHHHHhCCCcCEEECcCCCCCHh-------------------------------HHHHHH
Confidence                               001134577888888888753310                               000111


Q ss_pred             CCCccccCCccEEeEeCCCCCccc---ccchHHhhcccccEEEEcCcccccchhcccCccccccc--cccccccceeccc
Q 036689          438 PSSSVSFRNLKILEVSGCKKLTNL---VASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREE--IVFNKLKMLSLLD  512 (595)
Q Consensus       438 ~~~~~~l~~L~~L~l~~c~~l~~~---~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~--~~l~~L~~L~l~~  512 (595)
                      +..+..+++|+.|++++| .+++.   .....+..+++|++|++++|. +.........   ...  ..+++|+.|++++
T Consensus       209 ~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~---~~l~~~~~~~L~~L~L~~  283 (386)
T 2ca6_A          209 LEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVV---DAFSKLENIGLQTLRLQY  283 (386)
T ss_dssp             HTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHH---HHHHTCSSCCCCEEECCS
T ss_pred             HHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHH---HHHhhccCCCeEEEECcC
Confidence            123445667777777764 34310   011234566777777777775 4333110000   000  0156777777777


Q ss_pred             cccccc-----cccCcccccCCCccEEEEeCCC
Q 036689          513 LDSLTS-----FCSGNYIFKFPSLEVLFVVGCP  540 (595)
Q Consensus       513 ~~~l~~-----l~~~~~~~~~~~L~~L~l~~C~  540 (595)
                      | .++.     ++.... ..+|+|++|++++|+
T Consensus       284 n-~i~~~g~~~l~~~l~-~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          284 N-EIELDAVRTLKTVID-EKMPDLLFLELNGNR  314 (386)
T ss_dssp             S-CCBHHHHHHHHHHHH-HHCTTCCEEECTTSB
T ss_pred             C-cCCHHHHHHHHHHHH-hcCCCceEEEccCCc
Confidence            5 3444     543321 136777788777764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.22  E-value=5.3e-11  Score=128.75  Aligned_cols=63  Identities=21%  Similarity=0.259  Sum_probs=44.3

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceec
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEII  295 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~  295 (595)
                      .+++|+.|++++|.+..+     +. + ..+++|+.|+|++| .+++++   .+..+++|+.|++++|. +...+
T Consensus       151 ~l~~L~~L~Ls~N~l~~~-----~~-l-~~l~~L~~L~Ls~N-~i~~l~---~l~~l~~L~~L~L~~N~-l~~~p  213 (605)
T 1m9s_A          151 RLTKLDTLSLEDNQISDI-----VP-L-AGLTKLQNLYLSKN-HISDLR---ALAGLKNLDVLELFSQE-CLNKP  213 (605)
T ss_dssp             SCTTCSEEECCSSCCCCC-----GG-G-TTCTTCCEEECCSS-CCCBCG---GGTTCTTCSEEECCSEE-EECCC
T ss_pred             ccCCCCEEECcCCcCCCc-----hh-h-ccCCCCCEEECcCC-CCCCCh---HHccCCCCCEEEccCCc-CcCCc
Confidence            467888888888877655     22 2 46788888888876 566542   35778888888888887 55443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.19  E-value=2.1e-10  Score=105.84  Aligned_cols=82  Identities=10%  Similarity=0.116  Sum_probs=47.0

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      +.+++|++|+++++ .++.++       ....+++|++|+++++ .++.+    ..+..+++|++|++++| .++...+ 
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~-------~l~~l~~L~~L~l~~n-~~~~~----~~l~~l~~L~~L~l~~n-~l~~~~~-  105 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLT-------GIEYAHNIKDLTINNI-HATNY----NPISGLSNLERLRIMGK-DVTSDKI-  105 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCT-------TGGGCTTCSEEEEESC-CCSCC----GGGTTCTTCCEEEEECT-TCBGGGS-
T ss_pred             hhcCCccEEeccCC-CccChH-------HHhcCCCCCEEEccCC-CCCcc----hhhhcCCCCCEEEeECC-ccCcccC-
Confidence            56666677777666 444331       2445666777777665 44433    13556667777777764 4443222 


Q ss_pred             hhhhcCCCCcEEEEccc
Q 036689          125 SAAKCLPRLERIAVINC  141 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c  141 (595)
                      ..++.+++|++|++++|
T Consensus       106 ~~l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A          106 PNLSGLTSLTLLDISHS  122 (197)
T ss_dssp             CCCTTCTTCCEEECCSS
T ss_pred             hhhcCCCCCCEEEecCC
Confidence            44556667777777664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.19  E-value=7.5e-11  Score=127.54  Aligned_cols=189  Identities=19%  Similarity=0.242  Sum_probs=125.1

Q ss_pred             cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689           21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS  100 (595)
Q Consensus        21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  100 (595)
                      +.++..+.+..... .++. .  ...+++|+.|.++++ .+..++       .+..+++|++|+|+++ .+..+.    +
T Consensus        20 l~~l~~l~l~~~~i-~~~~-~--~~~L~~L~~L~l~~n-~i~~l~-------~l~~l~~L~~L~Ls~N-~l~~~~----~   82 (605)
T 1m9s_A           20 FAETIKDNLKKKSV-TDAV-T--QNELNSIDQIIANNS-DIKSVQ-------GIQYLPNVTKLFLNGN-KLTDIK----P   82 (605)
T ss_dssp             HHHHHHHHTTCSCT-TSEE-C--HHHHTTCCCCBCTTC-CCCCCT-------TGGGCTTCCEEECTTS-CCCCCG----G
T ss_pred             HHHHHHHhccCCCc-cccc-c--hhcCCCCCEEECcCC-CCCCCh-------HHccCCCCCEEEeeCC-CCCCCh----h
Confidence            34444555544433 2221 1  257788888888777 455441       3456777888888775 555542    1


Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccc
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTS  180 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  180 (595)
                      +..+++|+.|+|++| .++.+   +.+..+++|++|++++|. +..++                                
T Consensus        83 l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~l~--------------------------------  125 (605)
T 1m9s_A           83 LTNLKNLGWLFLDEN-KIKDL---SSLKDLKKLKSLSLEHNG-ISDIN--------------------------------  125 (605)
T ss_dssp             GGGCTTCCEEECCSS-CCCCC---TTSTTCTTCCEEECTTSC-CCCCG--------------------------------
T ss_pred             hccCCCCCEEECcCC-CCCCC---hhhccCCCCCEEEecCCC-CCCCc--------------------------------
Confidence            567778888888875 55654   346677777777777743 22111                                


Q ss_pred             cccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEe
Q 036689          181 FCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILR  260 (595)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~  260 (595)
                                                           ....+++|+.|++++|.++.+     +..  ..+++|+.|+|+
T Consensus       126 -------------------------------------~l~~l~~L~~L~Ls~N~l~~l-----~~l--~~l~~L~~L~Ls  161 (605)
T 1m9s_A          126 -------------------------------------GLVHLPQLESLYLGNNKITDI-----TVL--SRLTKLDTLSLE  161 (605)
T ss_dssp             -------------------------------------GGGGCTTCSEEECCSSCCCCC-----GGG--GSCTTCSEEECC
T ss_pred             -------------------------------------cccCCCccCEEECCCCccCCc-----hhh--cccCCCCEEECc
Confidence                                                 112477888999998877765     221  478999999999


Q ss_pred             cCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689          261 KCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       261 ~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  322 (595)
                      +| .+..+.+   +..+++|++|++++|. +.+++.  ..        .+++|+.|+|++++
T Consensus       162 ~N-~l~~~~~---l~~l~~L~~L~Ls~N~-i~~l~~--l~--------~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          162 DN-QISDIVP---LAGLTKLQNLYLSKNH-ISDLRA--LA--------GLKNLDVLELFSQE  208 (605)
T ss_dssp             SS-CCCCCGG---GTTCTTCCEEECCSSC-CCBCGG--GT--------TCTTCSEEECCSEE
T ss_pred             CC-cCCCchh---hccCCCCCEEECcCCC-CCCChH--Hc--------cCCCCCEEEccCCc
Confidence            86 5666544   5889999999999997 877643  22        28999999999865

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.15  E-value=1.8e-10  Score=106.31  Aligned_cols=131  Identities=13%  Similarity=0.208  Sum_probs=90.4

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  300 (595)
                      .+++|+.|+++++.++.+     | .+ ..+++|++|++++| .++.+.   .+..+++|++|++++|. ++........
T Consensus        42 ~l~~L~~L~l~~n~i~~l-----~-~l-~~l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~~l~  109 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDL-----T-GI-EYAHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKD-VTSDKIPNLS  109 (197)
T ss_dssp             HHHTCCEEEEESSCCSCC-----T-TG-GGCTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTT-CBGGGSCCCT
T ss_pred             hcCCccEEeccCCCccCh-----H-HH-hcCCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCc-cCcccChhhc
Confidence            467889999998877765     4 22 57889999999987 555532   35788999999999887 6653332222


Q ss_pred             CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689          301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP  380 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  380 (595)
                              .+++|++|+++++.-....+..  ...+++|+.|++++|..++.++.                         
T Consensus       110 --------~l~~L~~L~Ls~n~i~~~~~~~--l~~l~~L~~L~L~~n~~i~~~~~-------------------------  154 (197)
T 4ezg_A          110 --------GLTSLTLLDISHSAHDDSILTK--INTLPKVNSIDLSYNGAITDIMP-------------------------  154 (197)
T ss_dssp             --------TCTTCCEEECCSSBCBGGGHHH--HTTCSSCCEEECCSCTBCCCCGG-------------------------
T ss_pred             --------CCCCCCEEEecCCccCcHhHHH--HhhCCCCCEEEccCCCCccccHh-------------------------
Confidence                    2788999999886532212211  12378888888888876666654                         


Q ss_pred             CccCCCcceEeccCCCCe
Q 036689          381 EKVFPNLEELGLDGKDIR  398 (595)
Q Consensus       381 ~~~l~~L~~L~l~~~~~~  398 (595)
                      +..+++|++|++++|...
T Consensus       155 l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          155 LKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             GGGCSSCCEEECTTBCCC
T ss_pred             hcCCCCCCEEECCCCCCc
Confidence            467788888888887643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.11  E-value=5.9e-10  Score=119.29  Aligned_cols=70  Identities=17%  Similarity=0.161  Sum_probs=32.7

Q ss_pred             CCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhh
Q 036689           49 QLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAK  128 (595)
Q Consensus        49 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~  128 (595)
                      +|++|+++++ .++.++..        .+++|++|+++++ +++.++      ..+++|++|++++| .++.+|.   +.
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~--------l~~~L~~L~Ls~N-~l~~ip------~~l~~L~~L~Ls~N-~l~~ip~---l~  119 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDN--------LPPQITVLEITQN-ALISLP------ELPASLEYLDACDN-RLSTLPE---LP  119 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSC--------CCTTCSEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSCCCC---CC
T ss_pred             CccEEEeCCC-CCCccCHh--------HcCCCCEEECcCC-CCcccc------cccCCCCEEEccCC-CCCCcch---hh
Confidence            5555555555 34433211        1245555555553 444331      23455555555553 4444331   22


Q ss_pred             cCCCCcEEEEcc
Q 036689          129 CLPRLERIAVIN  140 (595)
Q Consensus       129 ~l~~L~~L~l~~  140 (595)
                      .  +|++|++++
T Consensus       120 ~--~L~~L~Ls~  129 (571)
T 3cvr_A          120 A--SLKHLDVDN  129 (571)
T ss_dssp             T--TCCEEECCS
T ss_pred             c--CCCEEECCC
Confidence            2  555555555

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.09  E-value=4.1e-10  Score=114.47  Aligned_cols=174  Identities=20%  Similarity=0.163  Sum_probs=115.8

Q ss_pred             cEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCC-cCCCccEEeccCccCccccccccccccC
Q 036689           25 EYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDD-AFPILESLNLYNLIKLERICQDRLSVQS  103 (595)
Q Consensus        25 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~  103 (595)
                      +.+++.++.. +.++..+    .+++++|+|++| .++.+.+.     .+. .+++|++|+++++ ++..+...  .+..
T Consensus        21 ~~l~c~~~~l-~~iP~~~----~~~l~~L~Ls~N-~l~~l~~~-----~~~~~l~~L~~L~L~~N-~i~~i~~~--~~~~   86 (361)
T 2xot_A           21 NILSCSKQQL-PNVPQSL----PSYTALLDLSHN-NLSRLRAE-----WTPTRLTNLHSLLLSHN-HLNFISSE--AFVP   86 (361)
T ss_dssp             TEEECCSSCC-SSCCSSC----CTTCSEEECCSS-CCCEECTT-----SSSSCCTTCCEEECCSS-CCCEECTT--TTTT
T ss_pred             CEEEeCCCCc-CccCccC----CCCCCEEECCCC-CCCccChh-----hhhhcccccCEEECCCC-cCCccChh--hccC
Confidence            5677776654 4444333    456899999998 78887544     344 7899999999985 77776432  3678


Q ss_pred             CCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcccccc
Q 036689          104 FNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCC  183 (595)
Q Consensus       104 l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  183 (595)
                      +++|++|+|++ +.++.+++ ..+.++++|++|++++| .+..+...                                 
T Consensus        87 l~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~~---------------------------------  130 (361)
T 2xot_A           87 VPNLRYLDLSS-NHLHTLDE-FLFSDLQALEVLLLYNN-HIVVVDRN---------------------------------  130 (361)
T ss_dssp             CTTCCEEECCS-SCCCEECT-TTTTTCTTCCEEECCSS-CCCEECTT---------------------------------
T ss_pred             CCCCCEEECCC-CcCCcCCH-HHhCCCcCCCEEECCCC-cccEECHH---------------------------------
Confidence            89999999999 46777654 56788999999999884 34333210                                 


Q ss_pred             ccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCcccc---ccCCCccEEEEe
Q 036689          184 EVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMF---LCFQNLTRLILR  260 (595)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~---~~l~~L~~L~L~  260 (595)
                                                     .|   ..+++|+.|++++|.++.+     |..++   ..+++|+.|+|+
T Consensus       131 -------------------------------~~---~~l~~L~~L~L~~N~l~~l-----~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A          131 -------------------------------AF---EDMAQLQKLYLSQNQISRF-----PVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             -------------------------------TT---TTCTTCCEEECCSSCCCSC-----CGGGTC----CTTCCEEECC
T ss_pred             -------------------------------Hh---CCcccCCEEECCCCcCCee-----CHHHhcCcccCCcCCEEECC
Confidence                                           01   1356677777777766655     44332   246778888887


Q ss_pred             cCCCCccccchhhhhccCC--CcEEEeeccc
Q 036689          261 KCPKLKYIFSASMLGSFEH--LQHLEIRYCK  289 (595)
Q Consensus       261 ~c~~l~~l~~~~~~~~l~~--L~~L~l~~c~  289 (595)
                      ++ .++.++. ..+..++.  ++.|++.++.
T Consensus       172 ~N-~l~~l~~-~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          172 SN-KLKKLPL-TDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SS-CCCCCCH-HHHHHSCHHHHTTEECCSSC
T ss_pred             CC-CCCccCH-HHhhhccHhhcceEEecCCC
Confidence            64 5666533 34566666  4778877765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.08  E-value=1.1e-09  Score=111.38  Aligned_cols=174  Identities=19%  Similarity=0.235  Sum_probs=120.8

Q ss_pred             cEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccccc-CCCCccEEEecCCCCcccccchhhhhc
Q 036689           51 KHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQ-SFNELKTIRVELCDQLSNIFLLSAAKC  129 (595)
Q Consensus        51 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~l~~L~~L~L~~c~~l~~~~~~~~~~~  129 (595)
                      ++++++++ +++.++.        ...+.+++|+|+++ +++.+....  +. .+++|++|++++ +.++.+++ ..+.+
T Consensus        21 ~~l~c~~~-~l~~iP~--------~~~~~l~~L~Ls~N-~l~~l~~~~--~~~~l~~L~~L~L~~-N~i~~i~~-~~~~~   86 (361)
T 2xot_A           21 NILSCSKQ-QLPNVPQ--------SLPSYTALLDLSHN-NLSRLRAEW--TPTRLTNLHSLLLSH-NHLNFISS-EAFVP   86 (361)
T ss_dssp             TEEECCSS-CCSSCCS--------SCCTTCSEEECCSS-CCCEECTTS--SSSCCTTCCEEECCS-SCCCEECT-TTTTT
T ss_pred             CEEEeCCC-CcCccCc--------cCCCCCCEEECCCC-CCCccChhh--hhhcccccCEEECCC-CcCCccCh-hhccC
Confidence            57888776 6665532        23456899999995 777764332  34 789999999999 47787764 56788


Q ss_pred             CCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccccccc
Q 036689          130 LPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKL  209 (595)
Q Consensus       130 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (595)
                      +++|++|++++| .+..++..                                                           
T Consensus        87 l~~L~~L~Ls~N-~l~~~~~~-----------------------------------------------------------  106 (361)
T 2xot_A           87 VPNLRYLDLSSN-HLHTLDEF-----------------------------------------------------------  106 (361)
T ss_dssp             CTTCCEEECCSS-CCCEECTT-----------------------------------------------------------
T ss_pred             CCCCCEEECCCC-cCCcCCHH-----------------------------------------------------------
Confidence            999999999984 44443311                                                           


Q ss_pred             cCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhh---hccCCCcEEEee
Q 036689          210 DISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASML---GSFEHLQHLEIR  286 (595)
Q Consensus       210 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~---~~l~~L~~L~l~  286 (595)
                           .|   ..+++|+.|++++|.++.+...    . +..+++|+.|+|+++ .++.++. ..+   ..+++|++|+++
T Consensus       107 -----~~---~~l~~L~~L~L~~N~i~~~~~~----~-~~~l~~L~~L~L~~N-~l~~l~~-~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A          107 -----LF---SDLQALEVLLLYNNHIVVVDRN----A-FEDMAQLQKLYLSQN-QISRFPV-ELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             -----TT---TTCTTCCEEECCSSCCCEECTT----T-TTTCTTCCEEECCSS-CCCSCCG-GGTC----CTTCCEEECC
T ss_pred             -----Hh---CCCcCCCEEECCCCcccEECHH----H-hCCcccCCEEECCCC-cCCeeCH-HHhcCcccCCcCCEEECC
Confidence                 01   1467899999999988776322    2 257899999999975 6776544 333   568999999999


Q ss_pred             cccccceecccccCCCCCCCCcCCCc--ccEEeecCCC
Q 036689          287 YCKGLQEIISKEGADDQVPPNFVFPQ--VTILRLVGLP  322 (595)
Q Consensus       287 ~c~~l~~~~~~~~~~~~~~~~~~l~~--L~~L~L~~~~  322 (595)
                      ++. ++.++...+..        ++.  |+.|++.+++
T Consensus       172 ~N~-l~~l~~~~~~~--------l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          172 SNK-LKKLPLTDLQK--------LPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SSC-CCCCCHHHHHH--------SCHHHHTTEECCSSC
T ss_pred             CCC-CCccCHHHhhh--------ccHhhcceEEecCCC
Confidence            987 88776533322        565  4889998865

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.08  E-value=2.4e-10  Score=110.61  Aligned_cols=99  Identities=15%  Similarity=0.229  Sum_probs=51.8

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+.++..+++.++.. .+++ .+  ..+++|++|++++| +++.++       ....+++|++|+++++ .++.+.   .
T Consensus        17 ~l~~l~~l~l~~~~i-~~~~-~~--~~l~~L~~L~l~~n-~i~~l~-------~l~~l~~L~~L~L~~N-~i~~~~---~   80 (263)
T 1xeu_A           17 GLANAVKQNLGKQSV-TDLV-SQ--KELSGVQNFNGDNS-NIQSLA-------GMQFFTNLKELHLSHN-QISDLS---P   80 (263)
T ss_dssp             HHHHHHHHHHTCSCT-TSEE-CH--HHHTTCSEEECTTS-CCCCCT-------TGGGCTTCCEEECCSS-CCCCCG---G
T ss_pred             HHHHHHHHHhcCCCc-cccc-ch--hhcCcCcEEECcCC-Ccccch-------HHhhCCCCCEEECCCC-ccCCCh---h
Confidence            345556666655544 2332 22  56677777777666 454331       2345566666666664 444431   1


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN  140 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~  140 (595)
                       +..+++|++|++++| .+++++.   +.. ++|++|++++
T Consensus        81 -l~~l~~L~~L~L~~N-~l~~l~~---~~~-~~L~~L~L~~  115 (263)
T 1xeu_A           81 -LKDLTKLEELSVNRN-RLKNLNG---IPS-ACLSRLFLDN  115 (263)
T ss_dssp             -GTTCSSCCEEECCSS-CCSCCTT---CCC-SSCCEEECCS
T ss_pred             -hccCCCCCEEECCCC-ccCCcCc---ccc-CcccEEEccC
Confidence             455666666666663 4454431   112 5556665555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.07  E-value=5.7e-10  Score=103.86  Aligned_cols=109  Identities=16%  Similarity=0.189  Sum_probs=64.2

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      ..+++++|+++++... .+++.. .+.+++|++|+++++ .++.+++.     .+..+++|++|+++++ .++.+...  
T Consensus        26 ~~~~l~~L~l~~n~l~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~-----~~~~l~~L~~L~Ls~n-~l~~~~~~--   94 (208)
T 2o6s_A           26 IPAQTTYLDLETNSLK-SLPNGV-FDELTSLTQLYLGGN-KLQSLPNG-----VFNKLTSLTYLNLSTN-QLQSLPNG--   94 (208)
T ss_dssp             CCTTCSEEECCSSCCC-CCCTTT-TTTCTTCSEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSS-CCCCCCTT--
T ss_pred             CCCCCcEEEcCCCccC-cCChhh-hcccccCcEEECCCC-ccCccChh-----hcCCCCCcCEEECCCC-cCCccCHh--
Confidence            3456777777777553 332221 256777777777776 55544322     3455677777777774 55544221  


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEccc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINC  141 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  141 (595)
                      .+..+++|++|+++++ .++.+++ ..+..+++|++|++++|
T Consensus        95 ~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N  134 (208)
T 2o6s_A           95 VFDKLTQLKELALNTN-QLQSLPD-GVFDKLTQLKDLRLYQN  134 (208)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred             HhcCccCCCEEEcCCC-cCcccCH-hHhccCCcCCEEECCCC
Confidence            2456677777777773 5565543 44566777777777763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.05  E-value=2.1e-09  Score=114.95  Aligned_cols=176  Identities=15%  Similarity=0.159  Sum_probs=122.3

Q ss_pred             CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689          223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD  302 (595)
Q Consensus       223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  302 (595)
                      .+++.|++++++++.+     |..+   +++|+.|+++++ .++.++     ..+++|++|++++|. ++.++.  .   
T Consensus        59 ~~L~~L~Ls~n~L~~l-----p~~l---~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N~-l~~ip~--l---  118 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSL-----PDNL---PPQITVLEITQN-ALISLP-----ELPASLEYLDACDNR-LSTLPE--L---  118 (571)
T ss_dssp             TTCSEEECCSSCCSCC-----CSCC---CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSCCCC--C---
T ss_pred             CCccEEEeCCCCCCcc-----CHhH---cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCCC-CCCcch--h---
Confidence            4799999999988765     7654   588999999975 566653     457899999999987 777654  1   


Q ss_pred             CCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCc
Q 036689          303 QVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK  382 (595)
Q Consensus       303 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  382 (595)
                             ..+|+.|+++++. +..++.     .+++|+.|+++++. ++.+|.                           
T Consensus       119 -------~~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~---------------------------  157 (571)
T 3cvr_A          119 -------PASLKHLDVDNNQ-LTMLPE-----LPALLEYINADNNQ-LTMLPE---------------------------  157 (571)
T ss_dssp             -------CTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSCCCC---------------------------
T ss_pred             -------hcCCCEEECCCCc-CCCCCC-----cCccccEEeCCCCc-cCcCCC---------------------------
Confidence                   2389999999854 555554     27899999998874 444444                           


Q ss_pred             cCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCc-------cEEeEeCC
Q 036689          383 VFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNL-------KILEVSGC  455 (595)
Q Consensus       383 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L-------~~L~l~~c  455 (595)
                      .+++|++|++++|+...+..  +.    ++|+.|+++          .+.+..++.  +..  +|       +.|++++ 
T Consensus       158 ~l~~L~~L~Ls~N~L~~lp~--l~----~~L~~L~Ls----------~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~-  216 (571)
T 3cvr_A          158 LPTSLEVLSVRNNQLTFLPE--LP----ESLEALDVS----------TNLLESLPA--VPV--RNHHSEETEIFFRCRE-  216 (571)
T ss_dssp             CCTTCCEEECCSSCCSCCCC--CC----TTCCEEECC----------SSCCSSCCC--CC----------CCEEEECCS-
T ss_pred             cCCCcCEEECCCCCCCCcch--hh----CCCCEEECc----------CCCCCchhh--HHH--hhhcccccceEEecCC-
Confidence            46889999999987554322  11    678888883          345655444  322  56       8888887 


Q ss_pred             CCCcccccchHHhhcccccEEEEcCcc
Q 036689          456 KKLTNLVASSAAQSLVALVKMQVFGCR  482 (595)
Q Consensus       456 ~~l~~~~~~~~~~~l~~L~~L~l~~c~  482 (595)
                      +.++.++ ..+ ..+++|++|++++|+
T Consensus       217 N~l~~lp-~~l-~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          217 NRITHIP-ENI-LSLDPTCTIILEDNP  241 (571)
T ss_dssp             SCCCCCC-GGG-GGSCTTEEEECCSSS
T ss_pred             CcceecC-HHH-hcCCCCCEEEeeCCc
Confidence            5677663 333 447888888888876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.05  E-value=7.6e-10  Score=103.00  Aligned_cols=132  Identities=20%  Similarity=0.172  Sum_probs=63.8

Q ss_pred             CCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcce
Q 036689          310 FPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEE  389 (595)
Q Consensus       310 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~  389 (595)
                      .++|++|+++++. +..++... ...+++|++|+++++ .++.++.                       ..+..+++|++
T Consensus        27 ~~~l~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-----------------------~~~~~l~~L~~   80 (208)
T 2o6s_A           27 PAQTTYLDLETNS-LKSLPNGV-FDELTSLTQLYLGGN-KLQSLPN-----------------------GVFNKLTSLTY   80 (208)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTT-TTTCTTCSEEECCSS-CCCCCCT-----------------------TTTTTCTTCCE
T ss_pred             CCCCcEEEcCCCc-cCcCChhh-hcccccCcEEECCCC-ccCccCh-----------------------hhcCCCCCcCE
Confidence            5677888887743 44443322 123677777777765 3444444                       22356677777


Q ss_pred             EeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhh
Q 036689          390 LGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQS  469 (595)
Q Consensus       390 L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  469 (595)
                      |++++|....+...  ....+++|+.|++.          .+.+..+++..+..+++|+.|++++ +.++.+++ ..+..
T Consensus        81 L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~----------~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~-~~~~~  146 (208)
T 2o6s_A           81 LNLSTNQLQSLPNG--VFDKLTQLKELALN----------TNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPD-GVFDR  146 (208)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECC----------SSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCT-TTTTT
T ss_pred             EECCCCcCCccCHh--HhcCccCCCEEEcC----------CCcCcccCHhHhccCCcCCEEECCC-CccceeCH-HHhcc
Confidence            77777754432111  11233444444442          2333333333334444455555544 23333321 22334


Q ss_pred             cccccEEEEcCc
Q 036689          470 LVALVKMQVFGC  481 (595)
Q Consensus       470 l~~L~~L~l~~c  481 (595)
                      +++|++|+++++
T Consensus       147 l~~L~~L~l~~N  158 (208)
T 2o6s_A          147 LTSLQYIWLHDN  158 (208)
T ss_dssp             CTTCCEEECCSC
T ss_pred             CCCccEEEecCC
Confidence            444444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.03  E-value=6.2e-10  Score=111.57  Aligned_cols=102  Identities=21%  Similarity=0.205  Sum_probs=78.5

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCc-EEEeecccccceecccccC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQ-HLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~  300 (595)
                      +++|+.+++++++++.+     |...|..+++|+.+++.+  +++.+.. ..+.++++|+ .+.+.+  +++.++...+.
T Consensus       225 ~~~L~~l~L~~n~i~~I-----~~~aF~~~~~L~~l~l~~--ni~~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~~aF~  294 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTI-----PDFTFAQKKYLLKIKLPH--NLKTIGQ-RVFSNCGRLAGTLELPA--SVTAIEFGAFM  294 (329)
T ss_dssp             CTTCCEEECTTBCCCEE-----CTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEEEECT--TCCEECTTTTT
T ss_pred             cCCCeEEECCCCCccee-----cHhhhhCCCCCCEEECCc--ccceehH-HHhhCChhccEEEEEcc--cceEEchhhhh
Confidence            78999999999989888     555557889999999986  4777644 4568999999 999988  48888876665


Q ss_pred             CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceee
Q 036689          301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLD  343 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~  343 (595)
                      +        +++|+.+++.+ ..+..++..... .+++|+.++
T Consensus       295 ~--------c~~L~~l~l~~-n~i~~I~~~aF~-~~~~L~~ly  327 (329)
T 3sb4_A          295 G--------CDNLRYVLATG-DKITTLGDELFG-NGVPSKLIY  327 (329)
T ss_dssp             T--------CTTEEEEEECS-SCCCEECTTTTC-TTCCCCEEE
T ss_pred             C--------CccCCEEEeCC-CccCccchhhhc-CCcchhhhc
Confidence            5        89999999976 446666554322 267777765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.02  E-value=2.3e-09  Score=100.59  Aligned_cols=85  Identities=14%  Similarity=0.253  Sum_probs=43.3

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD  301 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  301 (595)
                      +++|++|++++|.++.+     +...+..+++|++|+++++ .++.+.+. .+..+++|++|+++++. ++.+++..+..
T Consensus        80 l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~  151 (220)
T 2v70_A           80 ASGVNEILLTSNRLENV-----QHKMFKGLESLKTLMLRSN-RITCVGND-SFIGLSSVRLLSLYDNQ-ITTVAPGAFDT  151 (220)
T ss_dssp             CTTCCEEECCSSCCCCC-----CGGGGTTCSSCCEEECTTS-CCCCBCTT-SSTTCTTCSEEECTTSC-CCCBCTTTTTT
T ss_pred             CCCCCEEECCCCccCcc-----CHhHhcCCcCCCEEECCCC-cCCeECHh-HcCCCccCCEEECCCCc-CCEECHHHhcC
Confidence            44555555555555444     2222234566666666653 34443332 33556666666666665 55554322222


Q ss_pred             CCCCCCcCCCcccEEeecCCC
Q 036689          302 DQVPPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       302 ~~~~~~~~l~~L~~L~L~~~~  322 (595)
                              +++|+.|++++++
T Consensus       152 --------l~~L~~L~L~~N~  164 (220)
T 2v70_A          152 --------LHSLSTLNLLANP  164 (220)
T ss_dssp             --------CTTCCEEECCSCC
T ss_pred             --------CCCCCEEEecCcC
Confidence                    5666666666643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.01  E-value=1.2e-09  Score=102.59  Aligned_cols=133  Identities=14%  Similarity=0.193  Sum_probs=102.2

Q ss_pred             cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689           21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS  100 (595)
Q Consensus        21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  100 (595)
                      .++++.|+++++... .+++. ....+++|++|+|++| .++.+.+.     .+..+++|++|+++++ .++.+...  .
T Consensus        31 ~~~l~~L~l~~n~i~-~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~l~~~--~   99 (220)
T 2v9t_B           31 PETITEIRLEQNTIK-VIPPG-AFSPYKKLRRIDLSNN-QISELAPD-----AFQGLRSLNSLVLYGN-KITELPKS--L   99 (220)
T ss_dssp             CTTCCEEECCSSCCC-EECTT-SSTTCTTCCEEECCSS-CCCEECTT-----TTTTCSSCCEEECCSS-CCCCCCTT--T
T ss_pred             CcCCCEEECCCCcCC-CcCHh-HhhCCCCCCEEECCCC-cCCCcCHH-----HhhCCcCCCEEECCCC-cCCccCHh--H
Confidence            478999999999773 44332 2278999999999999 78887554     5778899999999996 77776333  2


Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCC
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLP  176 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  176 (595)
                      +..+++|++|++++ +.++.+++ ..+..+++|++|++++| .+..++..         ....+++|+.|++++.+
T Consensus       100 f~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~~---------~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          100 FEGLFSLQLLLLNA-NKINCLRV-DAFQDLHNLNLLSLYDN-KLQTIAKG---------TFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCSCCCTT---------TTTTCTTCCEEECCSSC
T ss_pred             ccCCCCCCEEECCC-CCCCEeCH-HHcCCCCCCCEEECCCC-cCCEECHH---------HHhCCCCCCEEEeCCCC
Confidence            57899999999999 47787755 67889999999999994 55555421         23357889999998865

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.01  E-value=3e-09  Score=99.82  Aligned_cols=126  Identities=17%  Similarity=0.165  Sum_probs=58.6

Q ss_pred             eeccccccc-ccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689            3 TLKLKFNSV-SICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE   81 (595)
Q Consensus         3 ~l~l~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~   81 (595)
                      .|+|..|.+ .+.+..++.+++|++|+|+++......+..+  .++++|++|+|++| .++.+++.     .+..+++|+
T Consensus        36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~-----~f~~l~~L~  107 (220)
T 2v9t_B           36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF--QGLRSLNSLVLYGN-KITELPKS-----LFEGLFSLQ  107 (220)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT--TTCSSCCEEECCSS-CCCCCCTT-----TTTTCTTCC
T ss_pred             EEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh--hCCcCCCEEECCCC-cCCccCHh-----HccCCCCCC
Confidence            344444433 1223344455555555555554422112222  45555555555555 44444222     234455555


Q ss_pred             EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEccc
Q 036689           82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINC  141 (595)
Q Consensus        82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c  141 (595)
                      +|+++++ .+..+..  ..+..+++|++|++++ +.++.+++ ..+..+++|++|+++++
T Consensus       108 ~L~L~~N-~l~~~~~--~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          108 LLLLNAN-KINCLRV--DAFQDLHNLNLLSLYD-NKLQTIAK-GTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             EEECCSS-CCCCCCT--TTTTTCTTCCEEECCS-SCCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred             EEECCCC-CCCEeCH--HHcCCCCCCCEEECCC-CcCCEECH-HHHhCCCCCCEEEeCCC
Confidence            5555553 4444321  1244555555555555 24444432 33445555555555553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.99  E-value=7.5e-10  Score=107.08  Aligned_cols=124  Identities=15%  Similarity=0.122  Sum_probs=80.9

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  300 (595)
                      .+.++..++++++.++++     +. + ..+++|+.|+++++ .++.++   .++.+++|++|++++|. +++++.  ..
T Consensus        17 ~l~~l~~l~l~~~~i~~~-----~~-~-~~l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~N~-i~~~~~--l~   82 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDL-----VS-Q-KELSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSHNQ-ISDLSP--LK   82 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSE-----EC-H-HHHTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCSSC-CCCCGG--GT
T ss_pred             HHHHHHHHHhcCCCcccc-----cc-h-hhcCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCCCc-cCCChh--hc
Confidence            355666777777766655     31 1 46788888888876 566553   35778888888888887 776654  21


Q ss_pred             CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCc
Q 036689          301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLP  380 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  380 (595)
                              .+++|+.|+++++. +..++...    .++|+.|++++|. ++.++.                         
T Consensus        83 --------~l~~L~~L~L~~N~-l~~l~~~~----~~~L~~L~L~~N~-l~~~~~-------------------------  123 (263)
T 1xeu_A           83 --------DLTKLEELSVNRNR-LKNLNGIP----SACLSRLFLDNNE-LRDTDS-------------------------  123 (263)
T ss_dssp             --------TCSSCCEEECCSSC-CSCCTTCC----CSSCCEEECCSSC-CSBSGG-------------------------
T ss_pred             --------cCCCCCEEECCCCc-cCCcCccc----cCcccEEEccCCc-cCCChh-------------------------
Confidence                    27888888888853 54443321    2777777777763 443433                         


Q ss_pred             CccCCCcceEeccCCCC
Q 036689          381 EKVFPNLEELGLDGKDI  397 (595)
Q Consensus       381 ~~~l~~L~~L~l~~~~~  397 (595)
                      +..+++|++|++++|+.
T Consensus       124 l~~l~~L~~L~Ls~N~i  140 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNKL  140 (263)
T ss_dssp             GTTCTTCCEEECTTSCC
T ss_pred             hcCcccccEEECCCCcC
Confidence            45677777777777753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.99  E-value=3.1e-09  Score=100.41  Aligned_cols=133  Identities=17%  Similarity=0.145  Sum_probs=101.0

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      ..++|++|+++++......+..+  +.+++|++|+|++| .++.+++.     .+..+++|++|+++++ .++.+...  
T Consensus        38 ~~~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~N-~l~~i~~~-----~~~~l~~L~~L~Ls~N-~l~~l~~~--  106 (229)
T 3e6j_A           38 IPTNAQILYLHDNQITKLEPGVF--DSLINLKELYLGSN-QLGALPVG-----VFDSLTQLTVLDLGTN-QLTVLPSA--  106 (229)
T ss_dssp             CCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSS-CCCCCCTT--
T ss_pred             CCCCCCEEEcCCCccCccCHHHh--hCccCCcEEECCCC-CCCCcChh-----hcccCCCcCEEECCCC-cCCccChh--
Confidence            34889999999998754333334  78999999999998 67766433     4578899999999996 77766332  


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCC
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLP  176 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  176 (595)
                      .+..+++|++|++++ +.++.+|  ..+..+++|++|++++ +.+..++..         ....+++|+.|++++.+
T Consensus       107 ~~~~l~~L~~L~Ls~-N~l~~lp--~~~~~l~~L~~L~L~~-N~l~~~~~~---------~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          107 VFDRLVHLKELFMCC-NKLTELP--RGIERLTHLTHLALDQ-NQLKSIPHG---------AFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTTCTTCCEEECCS-SCCCSCC--TTGGGCTTCSEEECCS-SCCCCCCTT---------TTTTCTTCCEEECTTSC
T ss_pred             HhCcchhhCeEeccC-CcccccC--cccccCCCCCEEECCC-CcCCccCHH---------HHhCCCCCCEEEeeCCC
Confidence            257899999999999 5788776  5678999999999998 456655421         23357889999998754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.99  E-value=3.9e-09  Score=99.04  Aligned_cols=151  Identities=15%  Similarity=0.102  Sum_probs=108.6

Q ss_pred             ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689            2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE   81 (595)
Q Consensus         2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~   81 (595)
                      ++++++.|.+.--|..  ....+++|+++++.. ..+.+....+.+++|++|+|++| .++.+.+.     .+..+++|+
T Consensus        14 ~~l~~s~n~l~~iP~~--~~~~~~~L~L~~N~l-~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-----~~~~l~~L~   84 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEH--IPQYTAELRLNNNEF-TVLEATGIFKKLPQLRKINFSNN-KITDIEEG-----AFEGASGVN   84 (220)
T ss_dssp             TEEECCSSCCSSCCSC--CCTTCSEEECCSSCC-CEECCCCCGGGCTTCCEEECCSS-CCCEECTT-----TTTTCTTCC
T ss_pred             CEeEeCCCCcccCccC--CCCCCCEEEcCCCcC-CccCchhhhccCCCCCEEECCCC-cCCEECHH-----HhCCCCCCC
Confidence            3455655543211332  345678999999987 34433322389999999999998 78888554     567899999


Q ss_pred             EEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccc
Q 036689           82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQK  161 (595)
Q Consensus        82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  161 (595)
                      +|+++++ .++.+...  .+..+++|++|++++ +.++.+++ ..+..+++|++|++++| .+..++.         ...
T Consensus        85 ~L~Ls~N-~l~~~~~~--~~~~l~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~~---------~~~  149 (220)
T 2v70_A           85 EILLTSN-RLENVQHK--MFKGLESLKTLMLRS-NRITCVGN-DSFIGLSSVRLLSLYDN-QITTVAP---------GAF  149 (220)
T ss_dssp             EEECCSS-CCCCCCGG--GGTTCSSCCEEECTT-SCCCCBCT-TSSTTCTTCSEEECTTS-CCCCBCT---------TTT
T ss_pred             EEECCCC-ccCccCHh--HhcCCcCCCEEECCC-CcCCeECH-hHcCCCccCCEEECCCC-cCCEECH---------HHh
Confidence            9999996 77766332  367899999999999 47777654 67788999999999994 5555432         133


Q ss_pred             ccccccceEecCCCC
Q 036689          162 IEFGQLSTLCLGSLP  176 (595)
Q Consensus       162 ~~~~~L~~L~l~~~~  176 (595)
                      ..+++|+.|++++.+
T Consensus       150 ~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          150 DTLHSLSTLNLLANP  164 (220)
T ss_dssp             TTCTTCCEEECCSCC
T ss_pred             cCCCCCCEEEecCcC
Confidence            457889999998754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.98  E-value=1.9e-09  Score=101.84  Aligned_cols=128  Identities=17%  Similarity=0.209  Sum_probs=101.7

Q ss_pred             ceecccccccc-cCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCc
Q 036689            2 RTLKLKFNSVS-ICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPIL   80 (595)
Q Consensus         2 ~~l~l~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L   80 (595)
                      +.|+|+.|.++ +.+..+..+++|++|+|+++.. ..+++.. .+.+++|++|+|++| .++.+++.     .+..+++|
T Consensus        43 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~-----~~~~l~~L  114 (229)
T 3e6j_A           43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV-FDSLTQLTVLDLGTN-QLTVLPSA-----VFDRLVHL  114 (229)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTT-TTTCTTCCEEECCSS-CCCCCCTT-----TTTTCTTC
T ss_pred             CEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhh-cccCCCcCEEECCCC-cCCccChh-----HhCcchhh
Confidence            56788877763 3366777899999999999987 4444332 278999999999999 78876443     45689999


Q ss_pred             cEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCC
Q 036689           81 ESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRN  143 (595)
Q Consensus        81 ~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~  143 (595)
                      ++|+++++ ++..+   +..+..+++|++|++++ +.++.+++ ..+..+++|++|++++++.
T Consensus       115 ~~L~Ls~N-~l~~l---p~~~~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          115 KELFMCCN-KLTEL---PRGIERLTHLTHLALDQ-NQLKSIPH-GAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CEEECCSS-CCCSC---CTTGGGCTTCSEEECCS-SCCCCCCT-TTTTTCTTCCEEECTTSCB
T ss_pred             CeEeccCC-ccccc---CcccccCCCCCEEECCC-CcCCccCH-HHHhCCCCCCEEEeeCCCc
Confidence            99999996 77766   44478899999999999 57887765 6788899999999999653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.92  E-value=8.6e-09  Score=103.18  Aligned_cols=264  Identities=13%  Similarity=0.086  Sum_probs=149.8

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhc--------cCCCcEEEeecccccce
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGS--------FEHLQHLEIRYCKGLQE  293 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~--------l~~L~~L~l~~c~~l~~  293 (595)
                      +++|+.|++++|++.....   +..   .++.++.+.+...    .++. ..+.+        +++|++|.+.. . ++.
T Consensus        48 l~~L~~LdLs~n~i~~~~~---~~~---~~~~~~~~~~~~~----~I~~-~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~  114 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSG---KAG---TYPNGKFYIYMAN----FVPA-YAFSNVVNGVTKGKQTLEKVILSE-K-IKN  114 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEE---SSS---SSGGGCCEEECTT----EECT-TTTEEEETTEEEECTTCCC-CBCT-T-CCE
T ss_pred             hccCeEEecCcceeEEecC---ccc---ccccccccccccc----ccCH-HHhcccccccccccCCCcEEECCc-c-ccc
Confidence            7889999999997772211   111   2333344444321    2222 34466        88899988887 4 888


Q ss_pred             ecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCC---CccccccccccccCCCCCCCCC
Q 036689          294 IISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACD---QVTVFDSELFSFCESSEEDKPD  370 (595)
Q Consensus       294 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~---~l~~l~~~~~~~~~~~~~~~~~  370 (595)
                      ++...+.+        +++|+.+++.+. .+..++...... +.++..+......   ....+..               
T Consensus       115 I~~~aF~~--------~~~L~~l~l~~n-~i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~---------------  169 (329)
T 3sb4_A          115 IEDAAFKG--------CDNLKICQIRKK-TAPNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEH---------------  169 (329)
T ss_dssp             ECTTTTTT--------CTTCCEEEBCCS-SCCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTT---------------
T ss_pred             hhHHHhhc--------CcccceEEcCCC-CccccchhhhcC-CCceEEecCcchhhhhccccccc---------------
Confidence            87755555        888899988874 344444433211 3333333322100   0011111               


Q ss_pred             CCCCCCCCCcCccCCCcc-eEeccCCCCee--ccCCCCCcccccCceeEEeeccccccccccCccccccCCCCc-cccCC
Q 036689          371 IPAQQPLFLPEKVFPNLE-ELGLDGKDIRM--IWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSS-VSFRN  446 (595)
Q Consensus       371 ~~~~~~l~~~~~~l~~L~-~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~-~~l~~  446 (595)
                              ..+..+.+|+ .+.+.....+.  ++..   .....+++.+.+.+.-           .......+ ..+++
T Consensus       170 --------~~f~~~~~L~~~i~~~~~~~l~~~~~~~---~~~~~~~~~l~~~~~l-----------~~~~~~~l~~~~~~  227 (329)
T 3sb4_A          170 --------FAFIEGEPLETTIQVGAMGKLEDEIMKA---GLQPRDINFLTIEGKL-----------DNADFKLIRDYMPN  227 (329)
T ss_dssp             --------SCEEESCCCEEEEEECTTCCHHHHHHHT---TCCGGGCSEEEEEECC-----------CHHHHHHHHHHCTT
T ss_pred             --------cccccccccceeEEecCCCcHHHHHhhc---ccCccccceEEEeeee-----------cHHHHHHHHHhcCC
Confidence                    0112344555 44554443332  1110   0122344445443210           00000000 12678


Q ss_pred             ccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCcccccccccccccc-ceeccccccccccccCccc
Q 036689          447 LKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLK-MLSLLDLDSLTSFCSGNYI  525 (595)
Q Consensus       447 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~-~L~l~~~~~l~~l~~~~~~  525 (595)
                      |+.+++.+ ++++.+ +...+.++++|+++++.+.  ++.+....+.       .+++|+ .+.+.+  +++.+..+++.
T Consensus       228 L~~l~L~~-n~i~~I-~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~-------~~~~L~~~l~l~~--~l~~I~~~aF~  294 (329)
T 3sb4_A          228 LVSLDISK-TNATTI-PDFTFAQKKYLLKIKLPHN--LKTIGQRVFS-------NCGRLAGTLELPA--SVTAIEFGAFM  294 (329)
T ss_dssp             CCEEECTT-BCCCEE-CTTTTTTCTTCCEEECCTT--CCEECTTTTT-------TCTTCCEEEEECT--TCCEECTTTTT
T ss_pred             CeEEECCC-CCccee-cHhhhhCCCCCCEEECCcc--cceehHHHhh-------CChhccEEEEEcc--cceEEchhhhh
Confidence            89999887 457777 4455678889999998774  7777655443       477888 888887  77888777654


Q ss_pred             ccCCCccEEEEeCCCCccccCC-CCCCCCCcceEEe
Q 036689          526 FKFPSLEVLFVVGCPKMNIFTT-GELSTPPRVDVMY  560 (595)
Q Consensus       526 ~~~~~L~~L~l~~C~~l~~lp~-~~~~~~~L~~l~i  560 (595)
                       .|++|+.|++.+ .+++.++. .+..+++|+.|+.
T Consensus       295 -~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          295 -GCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             -TCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred             -CCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence             588999999876 47888865 4567899998874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.86  E-value=5.4e-09  Score=93.55  Aligned_cols=137  Identities=18%  Similarity=0.158  Sum_probs=97.3

Q ss_pred             ccccccEEEeccCCCC-ccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccc
Q 036689           20 GIKDVEYLCLDKSQDV-KNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDR   98 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~   98 (595)
                      ..++|++|+++++... ..++..+  ..+++|++|++++| .++.+       ..+..+++|++|+++++ .+...  .+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~--~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~Ls~N-~l~~~--~~   88 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLT--AEFVNLEFLSLINV-GLISV-------SNLPKLPKLKKLELSEN-RIFGG--LD   88 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCC--GGGGGCCEEEEESS-CCCCC-------SSCCCCSSCCEEEEESC-CCCSC--CC
T ss_pred             CcccCCEEECCCCCCChhhHHHHH--HhCCCCCEEeCcCC-CCCCh-------hhhccCCCCCEEECcCC-cCchH--HH
Confidence            5688999999998764 2444333  78999999999998 56644       25677899999999996 56653  12


Q ss_pred             ccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCC
Q 036689           99 LSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPE  177 (595)
Q Consensus        99 ~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  177 (595)
                      ..+..+++|++|++++| .+++++....+..+++|++|++++|. +..++..      .......+++|+.|+++++..
T Consensus        89 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~------~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           89 MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDY------RESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTH------HHHHHTTCSSCCEETTEETTS
T ss_pred             HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHH------HHHHHHhCccCcEecCCCCCh
Confidence            22456899999999995 67776544677889999999999854 4433310      001234578899998887753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.85  E-value=3.5e-09  Score=92.64  Aligned_cols=133  Identities=17%  Similarity=0.150  Sum_probs=96.5

Q ss_pred             ccccccEEEeccCCCC-ccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccc
Q 036689           20 GIKDVEYLCLDKSQDV-KNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDR   98 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~   98 (595)
                      ..++++.|+++++... +.++..+  +.+++|++|++++| .++.+       ..+..+++|++|+++++ .+...  .+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~Ls~n-~i~~~--~~   81 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLT--DEFEELEFLSTINV-GLTSI-------ANLPKLNKLKKLELSDN-RVSGG--LE   81 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCC--TTCTTCCEEECTTS-CCCCC-------TTCCCCTTCCEEECCSS-CCCSC--TH
T ss_pred             CCccCeEEEccCCcCChhHHHHHH--hhcCCCcEEECcCC-CCCCc-------hhhhcCCCCCEEECCCC-cccch--HH
Confidence            5689999999999874 3454433  78999999999998 67654       25678999999999996 66652  12


Q ss_pred             ccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecC
Q 036689           99 LSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLG  173 (595)
Q Consensus        99 ~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  173 (595)
                      ..+..+++|++|++++| .+++++....+..+++|++|++++| .+..++..      .......+++|+.|+++
T Consensus        82 ~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~------~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           82 VLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDY------RENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTH------HHHHHHHCTTCCEETTB
T ss_pred             HHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchHHH------HHHHHHHCCCcccccCC
Confidence            23556999999999995 6777654467889999999999996 44443310      00123457888888765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.85  E-value=4.3e-09  Score=94.18  Aligned_cols=128  Identities=24%  Similarity=0.272  Sum_probs=82.5

Q ss_pred             ceecccccccc--cCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCC
Q 036689            2 RTLKLKFNSVS--ICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPI   79 (595)
Q Consensus         2 ~~l~l~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~   79 (595)
                      +.|+|..|.+.  --+..+..+++|++|++.+|.. ..+ ..+  +.+++|++|++++| .++...+.     .+..+++
T Consensus        27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-~~~-~~~--~~l~~L~~L~Ls~N-~l~~~~~~-----~~~~l~~   96 (168)
T 2ell_A           27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISV-SNL--PKLPKLKKLELSEN-RIFGGLDM-----LAEKLPN   96 (168)
T ss_dssp             SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-CCC-SSC--CCCSSCCEEEEESC-CCCSCCCH-----HHHHCTT
T ss_pred             CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-CCh-hhh--ccCCCCCEEECcCC-cCchHHHH-----HHhhCCC
Confidence            45666666554  2244455778888888888775 333 333  67888888888887 45542121     2345788


Q ss_pred             ccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccc--hhhhhcCCCCcEEEEcccC
Q 036689           80 LESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL--LSAAKCLPRLERIAVINCR  142 (595)
Q Consensus        80 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~--~~~~~~l~~L~~L~l~~c~  142 (595)
                      |++|+++++ .++.+.. ...+..+++|++|++++| .++..++  ...+..+++|++|++++|.
T Consensus        97 L~~L~Ls~N-~l~~~~~-~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           97 LTHLNLSGN-KLKDIST-LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CCEEECBSS-SCCSSGG-GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCEEeccCC-ccCcchh-HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            888888886 6665421 123667888888888885 5665542  1366778888888888754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.80  E-value=5.4e-07  Score=92.46  Aligned_cols=102  Identities=11%  Similarity=0.047  Sum_probs=57.1

Q ss_pred             CccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccccccc
Q 036689          440 SSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSF  519 (595)
Q Consensus       440 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l  519 (595)
                      .+..+.+|+.+.+.+  .++.+ ....+.++++|+.+.+.+  .++.+....+.       .+.+|+.+.+..  +++.+
T Consensus       292 ~F~~~~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~-------~c~~L~~i~lp~--~l~~I  357 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLD--SVKFI-GEEAFESCTSLVSIDLPY--LVEEIGKRSFR-------GCTSLSNINFPL--SLRKI  357 (394)
T ss_dssp             TTTTCTTCCEEEECT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEECTTTTT-------TCTTCCEECCCT--TCCEE
T ss_pred             ccccccccccccccc--cccee-chhhhcCCCCCCEEEeCC--cccEEhHHhcc-------CCCCCCEEEECc--cccEe
Confidence            444566777776653  35544 233446667777777643  25555433332       356677776654  36666


Q ss_pred             ccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceE
Q 036689          520 CSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDV  558 (595)
Q Consensus       520 ~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l  558 (595)
                      ...++. .|++|+.+.+..  .+..+.....++++|+.|
T Consensus       358 ~~~aF~-~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          358 GANAFQ-GCINLKKVELPK--RLEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CTTTBT-TCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred             hHHHhh-CCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence            655543 467777777753  344444445556666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.80  E-value=7.9e-07  Score=91.12  Aligned_cols=261  Identities=9%  Similarity=0.079  Sum_probs=173.3

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD  301 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  301 (595)
                      +..++.+.+.+ +++.+....+     .. .+|+.+.+..  +++.+.... +.++ +|+.+.+..  .++.+....+.+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF-----~~-~~L~~i~l~~--~i~~I~~~a-F~~~-~L~~i~lp~--~l~~I~~~aF~~  178 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAF-----RN-SQIAKVVLNE--GLKSIGDMA-FFNS-TVQEIVFPS--TLEQLKEDIFYY  178 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTT-----TT-CCCSEEECCT--TCCEECTTT-TTTC-CCCEEECCT--TCCEECSSTTTT
T ss_pred             cCCccEEEECC-ccCEehHhhc-----cc-CCccEEEeCC--CccEECHHh-cCCC-CceEEEeCC--CccEehHHHhhC
Confidence            35566666654 3555532222     33 3688888864  476665443 3443 689888875  478887655554


Q ss_pred             CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcC
Q 036689          302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPE  381 (595)
Q Consensus       302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  381 (595)
                              +++|+.+++.+ ..+..++.+...  +.+|+.+.+.+  .++.++.                       ..+
T Consensus       179 --------c~~L~~l~l~~-n~l~~I~~~aF~--~~~L~~l~lp~--~l~~I~~-----------------------~aF  222 (401)
T 4fdw_A          179 --------CYNLKKADLSK-TKITKLPASTFV--YAGIEEVLLPV--TLKEIGS-----------------------QAF  222 (401)
T ss_dssp             --------CTTCCEEECTT-SCCSEECTTTTT--TCCCSEEECCT--TCCEECT-----------------------TTT
T ss_pred             --------cccCCeeecCC-CcceEechhhEe--ecccCEEEeCC--chheehh-----------------------hHh
Confidence                    88899999986 346666555433  67888888863  3666665                       345


Q ss_pred             ccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCc--
Q 036689          382 KVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLT--  459 (595)
Q Consensus       382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~--  459 (595)
                      ..+++|+.+.+..+ ...+....+..   .+|+.+.+.           +++..+....+..+++|+.+.+.+. .+.  
T Consensus       223 ~~~~~L~~l~l~~~-l~~I~~~aF~~---~~L~~i~lp-----------~~i~~I~~~aF~~c~~L~~l~l~~~-~~~~~  286 (401)
T 4fdw_A          223 LKTSQLKTIEIPEN-VSTIGQEAFRE---SGITTVKLP-----------NGVTNIASRAFYYCPELAEVTTYGS-TFNDD  286 (401)
T ss_dssp             TTCTTCCCEECCTT-CCEECTTTTTT---CCCSEEEEE-----------TTCCEECTTTTTTCTTCCEEEEESS-CCCCC
T ss_pred             hCCCCCCEEecCCC-ccCcccccccc---CCccEEEeC-----------CCccEEChhHhhCCCCCCEEEeCCc-cccCC
Confidence            67889999998764 12233332322   578888873           3456677778888999999999873 222  


Q ss_pred             ---ccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEE
Q 036689          460 ---NLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFV  536 (595)
Q Consensus       460 ---~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l  536 (595)
                         .+ ....+.++++|+.+.+.+  .++.+....+.       .+++|+.+.+..  +++.+..+++. .| +|+.+.+
T Consensus       287 ~~~~I-~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~-------~c~~L~~l~lp~--~l~~I~~~aF~-~~-~L~~l~l  352 (401)
T 4fdw_A          287 PEAMI-HPYCLEGCPKLARFEIPE--SIRILGQGLLG-------GNRKVTQLTIPA--NVTQINFSAFN-NT-GIKEVKV  352 (401)
T ss_dssp             TTCEE-CTTTTTTCTTCCEECCCT--TCCEECTTTTT-------TCCSCCEEEECT--TCCEECTTSSS-SS-CCCEEEE
T ss_pred             cccEE-CHHHhhCCccCCeEEeCC--ceEEEhhhhhc-------CCCCccEEEECc--cccEEcHHhCC-CC-CCCEEEE
Confidence               34 345668899999999974  37777655443       478899999965  58888877765 46 9999999


Q ss_pred             eCCCCccccCCC-CCCC-CCcceEEecc
Q 036689          537 VGCPKMNIFTTG-ELST-PPRVDVMYRN  562 (595)
Q Consensus       537 ~~C~~l~~lp~~-~~~~-~~L~~l~i~~  562 (595)
                      .+. .+..++.+ ...+ ..++.|++-.
T Consensus       353 ~~n-~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          353 EGT-TPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             CCS-SCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             cCC-CCcccccccccCCCCCccEEEeCH
Confidence            885 45555433 3345 4788888863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.79  E-value=2.5e-08  Score=91.36  Aligned_cols=109  Identities=17%  Similarity=0.161  Sum_probs=61.6

Q ss_pred             ccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccc
Q 036689           22 KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSV  101 (595)
Q Consensus        22 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  101 (595)
                      .++++|+++++.. ..+++....+.+++|++|+|++| .++.+.+.     .+..+++|++|+++++ .++.+...  .+
T Consensus        29 ~~l~~L~l~~n~i-~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~~~~~--~~   98 (192)
T 1w8a_A           29 LHTTELLLNDNEL-GRISSDGLFGRLPHLVKLELKRN-QLTGIEPN-----AFEGASHIQELQLGEN-KIKEISNK--MF   98 (192)
T ss_dssp             TTCSEEECCSCCC-CSBCCSCSGGGCTTCCEEECCSS-CCCCBCTT-----TTTTCTTCCEEECCSC-CCCEECSS--SS
T ss_pred             CCCCEEECCCCcC-CccCCccccccCCCCCEEECCCC-CCCCcCHh-----HcCCcccCCEEECCCC-cCCccCHH--Hh
Confidence            3666777766654 33333211256667777777666 55554333     3455666777777664 55554222  24


Q ss_pred             cCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689          102 QSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       102 ~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      ..+++|++|++++ +.++..++ ..+..+++|++|++++++
T Consensus        99 ~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           99 LGLHQLKTLNLYD-NQISCVMP-GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TTCTTCCEEECCS-SCCCEECT-TSSTTCTTCCEEECTTCC
T ss_pred             cCCCCCCEEECCC-CcCCeeCH-HHhhcCCCCCEEEeCCCC
Confidence            5566677777766 35555433 455566666666666643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.79  E-value=2.9e-08  Score=90.99  Aligned_cols=108  Identities=20%  Similarity=0.193  Sum_probs=70.7

Q ss_pred             cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689           21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS  100 (595)
Q Consensus        21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  100 (595)
                      .+++++|+++++.. ..++..+  ..+++|++|+|++| .++.+.+.     .+..+++|++|+++++ .++.+...  .
T Consensus        30 ~~~l~~L~L~~n~i-~~ip~~~--~~l~~L~~L~Ls~N-~i~~i~~~-----~f~~l~~L~~L~Ls~N-~l~~i~~~--~   97 (193)
T 2wfh_A           30 PRDVTELYLDGNQF-TLVPKEL--SNYKHLTLIDLSNN-RISTLSNQ-----SFSNMTQLLTLILSYN-RLRCIPPR--T   97 (193)
T ss_dssp             CTTCCEEECCSSCC-CSCCGGG--GGCTTCCEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSS-CCCBCCTT--T
T ss_pred             CCCCCEEECCCCcC-chhHHHh--hcccCCCEEECCCC-cCCEeCHh-----HccCCCCCCEEECCCC-ccCEeCHH--H
Confidence            45777788777766 3444333  67777888888777 56655333     4566777788887774 56655322  3


Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      +..+++|++|++++ +.++.+++ ..+..+++|++|++++++
T Consensus        98 f~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           98 FDGLKSLRLLSLHG-NDISVVPE-GAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             TTTCTTCCEEECCS-SCCCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred             hCCCCCCCEEECCC-CCCCeeCh-hhhhcCccccEEEeCCCC
Confidence            56677778888877 46665543 456677777777777643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.77  E-value=7.3e-09  Score=90.61  Aligned_cols=125  Identities=19%  Similarity=0.261  Sum_probs=93.1

Q ss_pred             ceecccccccc--cCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCC
Q 036689            2 RTLKLKFNSVS--ICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPI   79 (595)
Q Consensus         2 ~~l~l~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~   79 (595)
                      +.|++..|.++  ..+..++.+++|++|++++|... .+ ..+  +.+++|++|++++| .++...+.     .+..+++
T Consensus        20 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~~--~~l~~L~~L~Ls~n-~i~~~~~~-----~~~~l~~   89 (149)
T 2je0_A           20 KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANL--PKLNKLKKLELSDN-RVSGGLEV-----LAEKCPN   89 (149)
T ss_dssp             SEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TTC--CCCTTCCEEECCSS-CCCSCTHH-----HHHHCTT
T ss_pred             eEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hhh--hcCCCCCEEECCCC-cccchHHH-----HhhhCCC
Confidence            56778777765  23555668899999999999764 33 344  78999999999999 56642122     3446899


Q ss_pred             ccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccc--hhhhhcCCCCcEEEEc
Q 036689           80 LESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL--LSAAKCLPRLERIAVI  139 (595)
Q Consensus        80 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~--~~~~~~l~~L~~L~l~  139 (595)
                      |++|+++++ .++.+.. +..+..+++|++|++++| .+++.++  ...+..+++|++|+++
T Consensus        90 L~~L~ls~N-~i~~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           90 LTHLNLSGN-KIKDLST-IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CCEEECTTS-CCCSHHH-HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCEEECCCC-cCCChHH-HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            999999996 6766421 134788999999999996 6777653  1468889999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.76  E-value=3.5e-10  Score=121.57  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=56.1

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceec-cccc
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEII-SKEG  299 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~-~~~~  299 (595)
                      .+++|+.|++++|.++.+     |..+ ..+++|+.|+++++ .++.++   .++++++|++|++++|. ++.+. +...
T Consensus       461 ~l~~L~~L~Ls~N~l~~l-----p~~~-~~l~~L~~L~Ls~N-~l~~lp---~l~~l~~L~~L~Ls~N~-l~~~~~p~~l  529 (567)
T 1dce_A          461 QLLLVTHLDLSHNRLRAL-----PPAL-AALRCLEVLQASDN-ALENVD---GVANLPRLQELLLCNNR-LQQSAAIQPL  529 (567)
T ss_dssp             GGTTCCEEECCSSCCCCC-----CGGG-GGCTTCCEEECCSS-CCCCCG---GGTTCSSCCEEECCSSC-CCSSSTTGGG
T ss_pred             ccccCcEeecCccccccc-----chhh-hcCCCCCEEECCCC-CCCCCc---ccCCCCCCcEEECCCCC-CCCCCCcHHH
Confidence            356667777776666544     5544 56667777777654 455542   24666677777776665 65553 2222


Q ss_pred             CCCCCCCCcCCCcccEEeecCCCCcccccCCC--ccccCcccceee
Q 036689          300 ADDQVPPNFVFPQVTILRLVGLPELKCLYPGM--HTSEWPALKLLD  343 (595)
Q Consensus       300 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~--~~~~~~~L~~L~  343 (595)
                      ..        +++|+.|++++++ +...+...  ....+|+|+.|+
T Consensus       530 ~~--------l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          530 VS--------CPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GG--------CTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred             hc--------CCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence            22        6667777776643 44333221  111245555553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.76  E-value=8.2e-11  Score=126.44  Aligned_cols=34  Identities=12%  Similarity=0.023  Sum_probs=21.2

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEe
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILR  260 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~  260 (595)
                      ..++|+.|++++|.++.+     |..+ +.+++|+.|+++
T Consensus       347 ~~~~L~~L~Ls~n~L~~L-----p~~i-~~l~~L~~L~l~  380 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVL-----QSEL-ESCKELQELEPE  380 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHH-----HHHH-HHHHHHHHHCTT
T ss_pred             cCccceeccCChhhHHhh-----HHHH-HHHHHHHHhccc
Confidence            356666777777666555     5555 556666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.75  E-value=2.3e-06  Score=87.64  Aligned_cols=225  Identities=13%  Similarity=0.112  Sum_probs=126.4

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      ..+..++.+.+.+  .++.|...     .+.. .+|+.+.+.+  +++.+....  +..+ +|+.+.+.+  .++.+.. 
T Consensus       110 ~~~~~l~~i~ip~--~i~~I~~~-----aF~~-~~L~~i~l~~--~i~~I~~~a--F~~~-~L~~i~lp~--~l~~I~~-  173 (401)
T 4fdw_A          110 EILKGYNEIILPN--SVKSIPKD-----AFRN-SQIAKVVLNE--GLKSIGDMA--FFNS-TVQEIVFPS--TLEQLKE-  173 (401)
T ss_dssp             EECSSCSEEECCT--TCCEECTT-----TTTT-CCCSEEECCT--TCCEECTTT--TTTC-CCCEEECCT--TCCEECS-
T ss_pred             EecCCccEEEECC--ccCEehHh-----hccc-CCccEEEeCC--CccEECHHh--cCCC-CceEEEeCC--CccEehH-
Confidence            3456777777765  47777443     3333 3688888875  366653332  3343 688888875  5665544 


Q ss_pred             hhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccc
Q 036689          125 SAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISS  204 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (595)
                      ..+.+|++|+.+++.+ +.+..++.          ..+.+.+|+.+.+.+  .++.+..                     
T Consensus       174 ~aF~~c~~L~~l~l~~-n~l~~I~~----------~aF~~~~L~~l~lp~--~l~~I~~---------------------  219 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSK-TKITKLPA----------STFVYAGIEEVLLPV--TLKEIGS---------------------  219 (401)
T ss_dssp             STTTTCTTCCEEECTT-SCCSEECT----------TTTTTCCCSEEECCT--TCCEECT---------------------
T ss_pred             HHhhCcccCCeeecCC-CcceEech----------hhEeecccCEEEeCC--chheehh---------------------
Confidence            6677888888888876 45555542          233345666666542  2322221                     


Q ss_pred             ccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEE
Q 036689          205 LEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLE  284 (595)
Q Consensus       205 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~  284 (595)
                               ..|   ..+++|+.+.+..+ ++.+....+     .. .+|+.+.+.  .+++.+.. ..+.+|++|+.+.
T Consensus       220 ---------~aF---~~~~~L~~l~l~~~-l~~I~~~aF-----~~-~~L~~i~lp--~~i~~I~~-~aF~~c~~L~~l~  277 (401)
T 4fdw_A          220 ---------QAF---LKTSQLKTIEIPEN-VSTIGQEAF-----RE-SGITTVKLP--NGVTNIAS-RAFYYCPELAEVT  277 (401)
T ss_dssp             ---------TTT---TTCTTCCCEECCTT-CCEECTTTT-----TT-CCCSEEEEE--TTCCEECT-TTTTTCTTCCEEE
T ss_pred             ---------hHh---hCCCCCCEEecCCC-ccCcccccc-----cc-CCccEEEeC--CCccEECh-hHhhCCCCCCEEE
Confidence                     012   24667777777653 455532222     23 567777775  34555433 3457777888887


Q ss_pred             eecccccc-----eecccccCCCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCcccccc
Q 036689          285 IRYCKGLQ-----EIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDS  355 (595)
Q Consensus       285 l~~c~~l~-----~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~  355 (595)
                      +.++. +.     .++...+.+        +++|+.+.+.+  .+..+...... .|++|+.+.+.+.  ++.+..
T Consensus       278 l~~~~-~~~~~~~~I~~~aF~~--------c~~L~~l~l~~--~i~~I~~~aF~-~c~~L~~l~lp~~--l~~I~~  339 (401)
T 4fdw_A          278 TYGST-FNDDPEAMIHPYCLEG--------CPKLARFEIPE--SIRILGQGLLG-GNRKVTQLTIPAN--VTQINF  339 (401)
T ss_dssp             EESSC-CCCCTTCEECTTTTTT--------CTTCCEECCCT--TCCEECTTTTT-TCCSCCEEEECTT--CCEECT
T ss_pred             eCCcc-ccCCcccEECHHHhhC--------CccCCeEEeCC--ceEEEhhhhhc-CCCCccEEEECcc--ccEEcH
Confidence            76654 22     344433333        67777777763  24444433221 2566777766432  444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.74  E-value=2.3e-08  Score=90.21  Aligned_cols=39  Identities=28%  Similarity=0.232  Sum_probs=16.3

Q ss_pred             cCCCccEEEEecCCCCccccchhhhhccCCCcEEEeeccc
Q 036689          250 CFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCK  289 (595)
Q Consensus       250 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~  289 (595)
                      .+++|+.|+++++ .++.++....+..+++|++|++++|.
T Consensus        86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~  124 (176)
T 1a9n_A           86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP  124 (176)
T ss_dssp             HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC
Confidence            3444444444443 23333221223444444444444444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.69  E-value=8.2e-08  Score=86.57  Aligned_cols=109  Identities=18%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             cccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccccc
Q 036689           21 IKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLS  100 (595)
Q Consensus        21 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  100 (595)
                      .++|++|+++++... .+++.. .+.+++|++|++++| .++.+++.     .+..+++|++|+++++ .++.+...  .
T Consensus        27 ~~~l~~L~l~~n~l~-~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~-----~~~~l~~L~~L~l~~N-~l~~~~~~--~   95 (177)
T 2o6r_A           27 PSSATRLELESNKLQ-SLPHGV-FDKLTQLTKLSLSQN-QIQSLPDG-----VFDKLTKLTILYLHEN-KLQSLPNG--V   95 (177)
T ss_dssp             CTTCSEEECCSSCCC-CCCTTT-TTTCTTCSEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSS-CCCCCCTT--T
T ss_pred             CCCCcEEEeCCCccc-EeCHHH-hcCcccccEEECCCC-cceEeChh-----HccCCCccCEEECCCC-CccccCHH--H
Confidence            356666666665542 222211 145666666666665 45544322     2345566666666664 44443211  1


Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      +..+++|++|+++++ .++.+++ ..+..+++|++|++++++
T Consensus        96 ~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           96 FDKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             hhCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCCC
Confidence            345566666666663 4554443 344556666666666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.67  E-value=4.5e-08  Score=88.23  Aligned_cols=137  Identities=14%  Similarity=0.054  Sum_probs=98.9

Q ss_pred             cccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccc
Q 036689           19 QGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDR   98 (595)
Q Consensus        19 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~   98 (595)
                      ..+.+|++|+++++... .+ +.+ ....++|++|++++| .++.+ +      .+..+++|++|+++++ .++.+... 
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i-~~~-~~~~~~L~~L~Ls~N-~l~~~-~------~l~~l~~L~~L~Ls~N-~l~~~~~~-   82 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VI-ENL-GATLDQFDAIDFSDN-EIRKL-D------GFPLLRRLKTLLVNNN-RICRIGEG-   82 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SC-CCG-GGGTTCCSEEECCSS-CCCEE-C------CCCCCSSCCEEECCSS-CCCEECSC-
T ss_pred             CCcCCceEEEeeCCCCc-hh-HHh-hhcCCCCCEEECCCC-CCCcc-c------ccccCCCCCEEECCCC-cccccCcc-
Confidence            36789999999999764 44 333 133449999999999 78776 1      4677899999999996 77766322 


Q ss_pred             ccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCC
Q 036689           99 LSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPE  177 (595)
Q Consensus        99 ~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  177 (595)
                       .+..+++|++|++++| .++.++....+..+++|++|++++|+ +..++..      .......+++|+.|++++++.
T Consensus        83 -~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~------~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           83 -LDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHY------RLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             -HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTH------HHHHHHHCTTCSEETTEECCH
T ss_pred             -hhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhH------HHHHHHHCCccceeCCCcCCH
Confidence             1378999999999995 67777643478899999999999964 4333310      000244689999999887764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.64  E-value=1.9e-07  Score=85.44  Aligned_cols=129  Identities=19%  Similarity=0.227  Sum_probs=93.3

Q ss_pred             ceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCC
Q 036689          226 EVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVP  305 (595)
Q Consensus       226 ~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  305 (595)
                      +.+++++++++.+     |..+   .++|+.|+++++ .++.+++...++.+++|++|+++++. ++.+.+..+.+    
T Consensus        11 ~~l~~s~~~l~~i-----p~~~---~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~----   76 (192)
T 1w8a_A           11 TTVDCTGRGLKEI-----PRDI---PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG----   76 (192)
T ss_dssp             TEEECTTSCCSSC-----CSCC---CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT----
T ss_pred             CEEEcCCCCcCcC-----ccCC---CCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCC----
Confidence            6788888877766     7654   458999999975 67766554346889999999999987 88775533333    


Q ss_pred             CCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCC
Q 036689          306 PNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFP  385 (595)
Q Consensus       306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  385 (595)
                          +++|++|+++++ .+..++... ...+++|+.|+++++. ++.+++                       ..+..++
T Consensus        77 ----l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~-----------------------~~~~~l~  126 (192)
T 1w8a_A           77 ----ASHIQELQLGEN-KIKEISNKM-FLGLHQLKTLNLYDNQ-ISCVMP-----------------------GSFEHLN  126 (192)
T ss_dssp             ----CTTCCEEECCSC-CCCEECSSS-STTCTTCCEEECCSSC-CCEECT-----------------------TSSTTCT
T ss_pred             ----cccCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCCCc-CCeeCH-----------------------HHhhcCC
Confidence                889999999995 466555432 1237899999998875 443433                       2246789


Q ss_pred             CcceEeccCCCCe
Q 036689          386 NLEELGLDGKDIR  398 (595)
Q Consensus       386 ~L~~L~l~~~~~~  398 (595)
                      +|++|++++|+..
T Consensus       127 ~L~~L~L~~N~l~  139 (192)
T 1w8a_A          127 SLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECTTCCBC
T ss_pred             CCCEEEeCCCCcc
Confidence            9999999998754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.61  E-value=3e-07  Score=84.08  Aligned_cols=127  Identities=17%  Similarity=0.310  Sum_probs=92.9

Q ss_pred             ceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCC
Q 036689          226 EVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVP  305 (595)
Q Consensus       226 ~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  305 (595)
                      +.++++++.++.+     |..+   .++|+.|+++++ .++.++  ..+..+++|++|+++++. ++.++...+.+    
T Consensus        13 ~~l~~~~~~l~~i-----p~~~---~~~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~----   76 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-----PKGI---PRDVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSNNR-ISTLSNQSFSN----   76 (193)
T ss_dssp             TEEECTTSCCSSC-----CSCC---CTTCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCSSC-CCCCCTTTTTT----
T ss_pred             CEEEcCCCCCCcC-----CCCC---CCCCCEEECCCC-cCchhH--HHhhcccCCCEEECCCCc-CCEeCHhHccC----
Confidence            4677777777766     7654   578999999975 566654  356889999999999988 88776644433    


Q ss_pred             CCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCC
Q 036689          306 PNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFP  385 (595)
Q Consensus       306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  385 (595)
                          +++|++|+++++ .+..++... ...+++|+.|+++++. ++.++.                       ..+..++
T Consensus        77 ----l~~L~~L~Ls~N-~l~~i~~~~-f~~l~~L~~L~L~~N~-l~~~~~-----------------------~~~~~l~  126 (193)
T 2wfh_A           77 ----MTQLLTLILSYN-RLRCIPPRT-FDGLKSLRLLSLHGND-ISVVPE-----------------------GAFNDLS  126 (193)
T ss_dssp             ----CTTCCEEECCSS-CCCBCCTTT-TTTCTTCCEEECCSSC-CCBCCT-----------------------TTTTTCT
T ss_pred             ----CCCCCEEECCCC-ccCEeCHHH-hCCCCCCCEEECCCCC-CCeeCh-----------------------hhhhcCc
Confidence                889999999995 466655432 2237899999998864 555665                       3356789


Q ss_pred             CcceEeccCCCCe
Q 036689          386 NLEELGLDGKDIR  398 (595)
Q Consensus       386 ~L~~L~l~~~~~~  398 (595)
                      +|++|++++|+..
T Consensus       127 ~L~~L~L~~N~~~  139 (193)
T 2wfh_A          127 ALSHLAIGANPLY  139 (193)
T ss_dssp             TCCEEECCSSCEE
T ss_pred             cccEEEeCCCCee
Confidence            9999999998754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.58  E-value=1.1e-05  Score=82.75  Aligned_cols=36  Identities=19%  Similarity=0.223  Sum_probs=16.4

Q ss_pred             CccccCCccEEeEeCCCCCcccccchHHhhcccccEEEE
Q 036689          440 SSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQV  478 (595)
Q Consensus       440 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l  478 (595)
                      .+..+++|+.+.+..  .++.+ ....+.++++|+.+.+
T Consensus       338 aF~~c~~L~~i~lp~--~l~~I-~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          338 SFRGCTSLSNINFPL--SLRKI-GANAFQGCINLKKVEL  373 (394)
T ss_dssp             TTTTCTTCCEECCCT--TCCEE-CTTTBTTCTTCCEEEE
T ss_pred             hccCCCCCCEEEECc--cccEe-hHHHhhCCCCCCEEEE
Confidence            444455555555542  23433 2233345555555555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.56  E-value=4.1e-07  Score=81.86  Aligned_cols=129  Identities=19%  Similarity=0.207  Sum_probs=89.8

Q ss_pred             cceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCC
Q 036689          225 LEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQV  304 (595)
Q Consensus       225 L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~  304 (595)
                      .+.+++++++++.+     |..+   .++|+.|+++++ .++.+++ ..++.+++|++|+++++. ++.++...+..   
T Consensus         9 ~~~l~~~~~~l~~~-----p~~~---~~~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~---   74 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV-----PTGI---PSSATRLELESN-KLQSLPH-GVFDKLTQLTKLSLSQNQ-IQSLPDGVFDK---   74 (177)
T ss_dssp             TTEEECCSSCCSSC-----CTTC---CTTCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCCCTTTTTT---
T ss_pred             CCEEEecCCCCccC-----CCCC---CCCCcEEEeCCC-cccEeCH-HHhcCcccccEEECCCCc-ceEeChhHccC---
Confidence            45677777766665     6543   578999999875 5666543 345788899999999887 77776533222   


Q ss_pred             CCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccC
Q 036689          305 PPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVF  384 (595)
Q Consensus       305 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  384 (595)
                           +++|+.|+++++ .+..++... ...+++|+.|+++++ .++.+|.                       ..+..+
T Consensus        75 -----l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~-----------------------~~~~~l  123 (177)
T 2o6r_A           75 -----LTKLTILYLHEN-KLQSLPNGV-FDKLTQLKELALDTN-QLKSVPD-----------------------GIFDRL  123 (177)
T ss_dssp             -----CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCT-----------------------TTTTTC
T ss_pred             -----CCccCEEECCCC-CccccCHHH-hhCCcccCEEECcCC-cceEeCH-----------------------HHhcCC
Confidence                 888999999885 455554432 123788999999887 4556665                       334678


Q ss_pred             CCcceEeccCCCCe
Q 036689          385 PNLEELGLDGKDIR  398 (595)
Q Consensus       385 ~~L~~L~l~~~~~~  398 (595)
                      ++|++|++++|+..
T Consensus       124 ~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          124 TSLQKIWLHTNPWD  137 (177)
T ss_dssp             TTCCEEECCSSCBC
T ss_pred             cccCEEEecCCCee
Confidence            89999999998744

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.40  E-value=9.7e-07  Score=78.86  Aligned_cols=103  Identities=17%  Similarity=0.122  Sum_probs=73.0

Q ss_pred             ccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccC
Q 036689           24 VEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQS  103 (595)
Q Consensus        24 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  103 (595)
                      .+.++++++.. +.++..+    .++|++|+|++| .++.+.+.     .+..+++|++|+++++ +++.+...  .+..
T Consensus        11 ~~~l~~s~n~l-~~ip~~~----~~~l~~L~L~~N-~i~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~l~~~--~f~~   76 (170)
T 3g39_A           11 GTTVDCSGKSL-ASVPTGI----PTTTQVLYLYDN-QITKLEPG-----VFDRLTQLTRLDLDNN-QLTVLPAG--VFDK   76 (170)
T ss_dssp             TTEEECTTSCC-SSCCSCC----CTTCSEEECCSS-CCCCCCTT-----TTTTCTTCSEEECCSS-CCCCCCTT--TTTT
T ss_pred             CCEEEeCCCCc-CccCccC----CCCCcEEEcCCC-cCCccChh-----hhcCcccCCEEECCCC-CcCccChh--hccC
Confidence            46778877665 4444333    478888888888 67766443     4567888888888885 67766332  2467


Q ss_pred             CCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689          104 FNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       104 l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      +++|++|++++ +.++.+++ ..+..+++|++|++++++
T Consensus        77 l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           77 LTQLTQLSLND-NQLKSIPR-GAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCC-CccCEeCH-HHhcCCCCCCEEEeCCCC
Confidence            88888888888 47777654 567788888888888854

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.39  E-value=6.4e-09  Score=95.83  Aligned_cols=110  Identities=18%  Similarity=0.235  Sum_probs=82.2

Q ss_pred             cccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccc
Q 036689           17 KLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQ   96 (595)
Q Consensus        17 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~   96 (595)
                      .++.+++|++|+++++.. ..++ .+  +.+++|++|++++| .++.++ .     ....+++|++|+++++ .++.+. 
T Consensus        43 ~~~~l~~L~~L~ls~n~l-~~l~-~~--~~l~~L~~L~l~~n-~l~~l~-~-----~~~~~~~L~~L~L~~N-~l~~l~-  109 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNI-EKIS-SL--SGMENLRILSLGRN-LIKKIE-N-----LDAVADTLEELWISYN-QIASLS-  109 (198)
T ss_dssp             HHHHTTTCSEEECSEEEE-SCCC-CH--HHHTTCCEEEEEEE-EECSCS-S-----HHHHHHHCSEEEEEEE-ECCCHH-
T ss_pred             HHhcCCCCCEEECCCCCC-cccc-cc--ccCCCCCEEECCCC-Cccccc-c-----hhhcCCcCCEEECcCC-cCCcCC-
Confidence            666788999999988866 3343 33  78999999999988 566442 1     3445688999999986 666652 


Q ss_pred             ccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCC
Q 036689           97 DRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRN  143 (595)
Q Consensus        97 ~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~  143 (595)
                         .+..+++|++|++++| .++.++....+..+++|++|++++|..
T Consensus       110 ---~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          110 ---GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ---HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ---ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence               3677889999999984 677665435678899999999998643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.39  E-value=1.1e-06  Score=78.78  Aligned_cols=102  Identities=18%  Similarity=0.153  Sum_probs=71.7

Q ss_pred             cEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCC
Q 036689           25 EYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSF  104 (595)
Q Consensus        25 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l  104 (595)
                      +.++++++.. +.++..+    .++|++|+|++| .++.+.+.     .+..+++|++|+++++ +++.+...  .+..+
T Consensus        15 ~~l~~~~n~l-~~iP~~~----~~~L~~L~Ls~N-~l~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~i~~~--~~~~l   80 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGI----PTDKQRLWLNNN-QITKLEPG-----VFDHLVNLQQLYFNSN-KLTAIPTG--VFDKL   80 (174)
T ss_dssp             SEEECCSSCC-SSCCSCC----CTTCSEEECCSS-CCCCCCTT-----TTTTCTTCCEEECCSS-CCCCCCTT--TTTTC
T ss_pred             cEEEeCCCCC-CccCCCc----CCCCcEEEeCCC-CccccCHH-----HhcCCcCCCEEECCCC-CCCccChh--HhCCc
Confidence            5677777655 4554433    378888888888 67766443     4567888888888885 77766332  14678


Q ss_pred             CCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689          105 NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       105 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      ++|++|++++ +.++.+++ ..+..+++|++|++++++
T Consensus        81 ~~L~~L~L~~-N~l~~l~~-~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           81 TQLTQLDLND-NHLKSIPR-GAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTCCEEECCS-SCCCCCCT-TTTTTCTTCSEEECCSSC
T ss_pred             chhhEEECCC-CccceeCH-HHhccccCCCEEEeCCCC
Confidence            8888888888 46776654 457788888888888854

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.37  E-value=2.7e-07  Score=102.19  Aligned_cols=109  Identities=12%  Similarity=0.080  Sum_probs=71.2

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      ..+++|++|+|++| .+..++.      ....+++|++|+|+++ .++.+   +..++.+++|++|+|++| .++.+|  
T Consensus       221 ~~l~~L~~L~Ls~n-~l~~l~~------~~~~l~~L~~L~Ls~N-~l~~l---p~~~~~l~~L~~L~Ls~N-~l~~lp--  286 (727)
T 4b8c_D          221 YDDQLWHALDLSNL-QIFNISA------NIFKYDFLTRLYLNGN-SLTEL---PAEIKNLSNLRVLDLSHN-RLTSLP--  286 (727)
T ss_dssp             -CCCCCCEEECTTS-CCSCCCG------GGGGCCSCSCCBCTTS-CCSCC---CGGGGGGTTCCEEECTTS-CCSSCC--
T ss_pred             ccCCCCcEEECCCC-CCCCCCh------hhcCCCCCCEEEeeCC-cCccc---ChhhhCCCCCCEEeCcCC-cCCccC--
Confidence            66777888888777 4554422      2336777888888875 56654   334677788888888874 566554  


Q ss_pred             hhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCc
Q 036689          125 SAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPEL  178 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  178 (595)
                      ..+.++++|++|++++| .+..+|.          .+..+++|+.|+++++.--
T Consensus       287 ~~~~~l~~L~~L~L~~N-~l~~lp~----------~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          287 AELGSCFQLKYFYFFDN-MVTTLPW----------EFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             SSGGGGTTCSEEECCSS-CCCCCCS----------STTSCTTCCCEECTTSCCC
T ss_pred             hhhcCCCCCCEEECCCC-CCCccCh----------hhhcCCCccEEeCCCCccC
Confidence            45677788888888774 4555552          2445677888887776543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.31  E-value=6.4e-07  Score=99.25  Aligned_cols=114  Identities=13%  Similarity=0.052  Sum_probs=85.3

Q ss_pred             cCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccc
Q 036689          436 LLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDS  515 (595)
Q Consensus       436 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~  515 (595)
                      .++..+..+++|+.|+++++ .+..++ .. +..+++|++|+|++|. ++.++.....        +++|+.|+++++ .
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~-~~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~--------l~~L~~L~Ls~N-~  281 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNL-QIFNIS-AN-IFKYDFLTRLYLNGNS-LTELPAEIKN--------LSNLRVLDLSHN-R  281 (727)
T ss_dssp             -------CCCCCCEEECTTS-CCSCCC-GG-GGGCCSCSCCBCTTSC-CSCCCGGGGG--------GTTCCEEECTTS-C
T ss_pred             cChhhhccCCCCcEEECCCC-CCCCCC-hh-hcCCCCCCEEEeeCCc-CcccChhhhC--------CCCCCEEeCcCC-c
Confidence            34446777889999999984 566663 23 3478999999999886 7777654443        889999999995 5


Q ss_pred             ccccccCcccccCCCccEEEEeCCCCccccCCCCCCCCCcceEEeccCCC
Q 036689          516 LTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTGELSTPPRVDVMYRNRGA  565 (595)
Q Consensus       516 l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~~~~~~~L~~l~i~~~~~  565 (595)
                      ++.+|...  ..+++|++|++++| .++.+|..+..+++|++|++++|.-
T Consensus       282 l~~lp~~~--~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          282 LTSLPAEL--GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             CSSCCSSG--GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CCccChhh--cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCcc
Confidence            77888765  34899999999987 6888998888899999999987654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.28  E-value=1.9e-08  Score=92.68  Aligned_cols=37  Identities=11%  Similarity=0.161  Sum_probs=17.8

Q ss_pred             ccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcc
Q 036689          101 VQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN  140 (595)
Q Consensus       101 ~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~  140 (595)
                      +..+++|++|++++| .++.++  ..+..+++|++|++++
T Consensus        66 ~~~l~~L~~L~l~~n-~l~~l~--~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           66 LSGMENLRILSLGRN-LIKKIE--NLDAVADTLEELWISY  102 (198)
T ss_dssp             HHHHTTCCEEEEEEE-EECSCS--SHHHHHHHCSEEEEEE
T ss_pred             cccCCCCCEEECCCC-Cccccc--chhhcCCcCCEEECcC
Confidence            344555555555553 344333  3333445555555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.26  E-value=9.3e-07  Score=78.30  Aligned_cols=94  Identities=12%  Similarity=0.179  Sum_probs=60.4

Q ss_pred             CCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcc
Q 036689          445 RNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNY  524 (595)
Q Consensus       445 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~  524 (595)
                      ..|+.|++++|. +++... ..+.++++|++|++++|..+++-....-..   ..-..++|++|++++|+++++--....
T Consensus        61 ~~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~---~~~~~~~L~~L~Ls~C~~ITD~Gl~~L  135 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQ---LENLQKSMLEMEIISCGNVTDKGIIAL  135 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHT---CHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred             ceEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHh---cccccCCCCEEEcCCCCcCCHHHHHHH
Confidence            468888888876 666422 334678888888888887665543221110   000124688888888888875433322


Q ss_pred             cccCCCccEEEEeCCCCccc
Q 036689          525 IFKFPSLEVLFVVGCPKMNI  544 (595)
Q Consensus       525 ~~~~~~L~~L~l~~C~~l~~  544 (595)
                       ..+++|++|++++|++++.
T Consensus       136 -~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          136 -HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             -GGCTTCCEEEEESCTTCCC
T ss_pred             -hcCCCCCEEECCCCCCCCc
Confidence             2488899999999988875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.26  E-value=4.8e-07  Score=80.13  Aligned_cols=38  Identities=16%  Similarity=0.296  Sum_probs=17.0

Q ss_pred             cceeecccccceeecccCCCccccccCCCccEEEEecCCCCcc
Q 036689          225 LEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKY  267 (595)
Q Consensus       225 L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~  267 (595)
                      |+.|++++|.+++.+...+     ..+++|++|+|++|..+++
T Consensus        63 L~~LDLs~~~Itd~GL~~L-----~~~~~L~~L~L~~C~~ItD  100 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHM-----EGLQYVEKIRLCKCHYIED  100 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGG-----TTCSCCCEEEEESCTTCCH
T ss_pred             EeEEeCcCCCccHHHHHHh-----cCCCCCCEEEeCCCCccCH
Confidence            5555555554443322211     2345555555555554444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.21  E-value=3.8e-06  Score=74.91  Aligned_cols=105  Identities=18%  Similarity=0.164  Sum_probs=76.5

Q ss_pred             ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689            2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE   81 (595)
Q Consensus         2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~   81 (595)
                      +.+++..|.+.--+.++  .+++++|+|+++......+..+  +++++|++|+|++| .++.+++.     .+..+++|+
T Consensus        12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~~-----~f~~l~~L~   81 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVF--DRLTQLTRLDLDNN-QLTVLPAG-----VFDKLTQLT   81 (170)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTT--TTCTTCSEEECCSS-CCCCCCTT-----TTTTCTTCC
T ss_pred             CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhh--cCcccCCEEECCCC-CcCccChh-----hccCCCCCC
Confidence            35666666532224333  5899999999998743333334  78999999999999 78877544     467899999


Q ss_pred             EEeccCccCccccccccccccCCCCccEEEecCCCCccc
Q 036689           82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSN  120 (595)
Q Consensus        82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~  120 (595)
                      +|+++++ +++.+...  .+..+++|++|+++++ .++.
T Consensus        82 ~L~L~~N-~l~~~~~~--~~~~l~~L~~L~L~~N-~~~c  116 (170)
T 3g39_A           82 QLSLNDN-QLKSIPRG--AFDNLKSLTHIWLLNN-PWDC  116 (170)
T ss_dssp             EEECCSS-CCCCCCTT--TTTTCTTCCEEECCSS-CBCT
T ss_pred             EEECCCC-ccCEeCHH--HhcCCCCCCEEEeCCC-CCCC
Confidence            9999996 78776432  3678999999999994 4543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.21  E-value=4e-06  Score=75.07  Aligned_cols=105  Identities=16%  Similarity=0.149  Sum_probs=76.0

Q ss_pred             eecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccE
Q 036689            3 TLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILES   82 (595)
Q Consensus         3 ~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~   82 (595)
                      .+++..+.+.--|.++  .++|++|+++++......+..+  +.+++|++|+|++| .++.+++.     .+..+++|++
T Consensus        16 ~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~i~~~-----~~~~l~~L~~   85 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVF--DHLVNLQQLYFNSN-KLTAIPTG-----VFDKLTQLTQ   85 (174)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECCSS-CCCCCCTT-----TTTTCTTCCE
T ss_pred             EEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHh--cCCcCCCEEECCCC-CCCccChh-----HhCCcchhhE
Confidence            4555555432124333  4899999999998743333334  78999999999999 78877543     4568899999


Q ss_pred             EeccCccCccccccccccccCCCCccEEEecCCCCcccc
Q 036689           83 LNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNI  121 (595)
Q Consensus        83 L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~  121 (595)
                      |+++++ .+..+...  .+..+++|++|+++++ .+...
T Consensus        86 L~L~~N-~l~~l~~~--~~~~l~~L~~L~L~~N-~~~c~  120 (174)
T 2r9u_A           86 LDLNDN-HLKSIPRG--AFDNLKSLTHIYLYNN-PWDCE  120 (174)
T ss_dssp             EECCSS-CCCCCCTT--TTTTCTTCSEEECCSS-CBCTT
T ss_pred             EECCCC-ccceeCHH--HhccccCCCEEEeCCC-Ccccc
Confidence            999995 77776332  2678999999999995 45543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.12  E-value=1.2e-06  Score=88.20  Aligned_cols=87  Identities=23%  Similarity=0.355  Sum_probs=54.1

Q ss_pred             cccCCCcEEEcccCCCceE--e--cCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCccc
Q 036689           45 EGFLQLKHLHVQNNPDFMC--I--VDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSN  120 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~--i--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~  120 (595)
                      .++++|+.|.+.+.. ...  +  .+...+......+|+|++|.++++..+. +  .+  + ..++|+.|++..|. +..
T Consensus       136 ~~l~~L~~L~l~~~~-~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l--~~--~-~~~~L~~L~L~~~~-l~~  207 (362)
T 2ra8_A          136 EKFAHFEGLFWGDID-FEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I--GK--K-PRPNLKSLEIISGG-LPD  207 (362)
T ss_dssp             HHHTTCSEEEECCCC-TTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C--CS--C-BCTTCSEEEEECSB-CCH
T ss_pred             hhcchhhheeecCcc-hhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e--cc--c-cCCCCcEEEEecCC-CCh
Confidence            689999999996541 110  0  0011122234578999999998863322 2  11  2 37899999999864 543


Q ss_pred             ccchhhhh--cCCCCcEEEEcc
Q 036689          121 IFLLSAAK--CLPRLERIAVIN  140 (595)
Q Consensus       121 ~~~~~~~~--~l~~L~~L~l~~  140 (595)
                      ... ..+.  .+++|++|++..
T Consensus       208 ~~l-~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          208 SVV-EDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             HHH-HHHHHSBCTTCCEEEEEC
T ss_pred             HHH-HHHHHccCCCCcEEEEec
Confidence            322 2333  799999999964

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.08  E-value=3.1e-07  Score=93.23  Aligned_cols=94  Identities=17%  Similarity=0.084  Sum_probs=42.0

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccc---hhhhhccCCCcEEEeecccccceecccc
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFS---ASMLGSFEHLQHLEIRYCKGLQEIISKE  298 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~  298 (595)
                      .++|++|++++|.+++.+...++..+ ...++|++|+|++| .+++...   ...+...++|++|++++|. +++.....
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L-~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~  230 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGL-AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALA  230 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHH-HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHH-hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHH
Confidence            34566666666655443222222222 23555666666654 2333110   1123445566666666665 44332111


Q ss_pred             cCCCCCCCCcCCCcccEEeecCCC
Q 036689          299 GADDQVPPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       299 ~~~~~~~~~~~l~~L~~L~L~~~~  322 (595)
                      ...    .....++|++|+|++++
T Consensus       231 l~~----~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          231 LAR----AAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHH----HHHHCSSCCEEECTTSS
T ss_pred             HHH----HHHhCCCCCEEeccCCC
Confidence            100    00014566666666643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.03  E-value=1.3e-05  Score=80.47  Aligned_cols=102  Identities=14%  Similarity=0.176  Sum_probs=73.8

Q ss_pred             EEEeccCCCCccccccccccccCCCcEEEccc-CCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCC
Q 036689           26 YLCLDKSQDVKNVLFDLDREGFLQLKHLHVQN-NPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSF  104 (595)
Q Consensus        26 ~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l  104 (595)
                      .++.++.+....++. +  +.+++|++|+|++ | .++.+++.     .+..+++|++|+|+++ +++.+...  .+..+
T Consensus        12 ~v~~~~~n~l~~ip~-l--~~~~~L~~L~l~~~n-~l~~~~~~-----~~~~l~~L~~L~l~~N-~l~~~~~~--~~~~l   79 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-L--PGAENLTELYIENQQ-HLQHLELR-----DLRGLGELRNLTIVKS-GLRFVAPD--AFHFT   79 (347)
T ss_dssp             CEECCSSCCCTTTTT-S--CSCSCCSEEECCSCS-SCCEECGG-----GSCSCCCCSEEECCSS-CCCEECTT--GGGSC
T ss_pred             EEEcCCCCCCCccCC-C--CCCCCeeEEEccCCC-CCCCcChh-----HhccccCCCEEECCCC-ccceeCHH--HhcCC
Confidence            456666644455655 4  7888999999986 5 78887544     5677889999999985 77776332  36788


Q ss_pred             CCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689          105 NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       105 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      ++|++|+|++ +.++.+++ ..+..++ |++|++.+++
T Consensus        80 ~~L~~L~l~~-N~l~~~~~-~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           80 PRLSRLNLSF-NALESLSW-KTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             SCCCEEECCS-SCCSCCCS-TTTCSCC-CCEEECCSSC
T ss_pred             cCCCEEeCCC-CccceeCH-HHcccCC-ceEEEeeCCC
Confidence            9999999998 57887764 4555555 8899888744

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.98  E-value=4.6e-07  Score=91.91  Aligned_cols=93  Identities=12%  Similarity=0.096  Sum_probs=50.8

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCc-CCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccc
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPL-DDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL  123 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~  123 (595)
                      .-.++|++|+|++| .++..... ..... ....++|++|+|+++ .+....... -...+++|++|++++| .+++...
T Consensus        69 ~~~~~L~~L~Ls~n-~l~~~~~~-~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~-l~~~L~~L~~L~Ls~n-~l~~~~~  143 (372)
T 3un9_A           69 EVLSSLRQLNLAGV-RMTPVKCT-VVAAVLGSGRHALDEVNLASC-QLDPAGLRT-LLPVFLRARKLGLQLN-SLGPEAC  143 (372)
T ss_dssp             HHHTTCCEEECTTS-CCCHHHHH-HHHHHHSSCSSCEEEEECTTC-CCCHHHHHH-THHHHHTEEEEECCSS-CCCHHHH
T ss_pred             HHHhhCCEEEecCC-CCCHHHHH-HHHHHHhhCCCCceEEEecCC-CCCHHHHHH-HHHHHHhccHhhcCCC-CCCHHHH
Confidence            45677888888887 45422100 00000 112357888888886 444321111 0234567888888886 5654322


Q ss_pred             hhh---h-hcCCCCcEEEEcccC
Q 036689          124 LSA---A-KCLPRLERIAVINCR  142 (595)
Q Consensus       124 ~~~---~-~~l~~L~~L~l~~c~  142 (595)
                      ...   + ...++|++|++++|.
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~  166 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNP  166 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSC
T ss_pred             HHHHHHHHhcCCccceeeCCCCC
Confidence            111   1 246788888888864

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.91  E-value=0.00071  Score=69.02  Aligned_cols=113  Identities=12%  Similarity=0.115  Sum_probs=64.8

Q ss_pred             ccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccc
Q 036689          433 LLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLD  512 (595)
Q Consensus       433 l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~  512 (595)
                      +..+....+..+.+|+.+.+.+  .+..+ ....+.+++.|+.+.+..  .++.+....+.       .+++|+.+.+.+
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~--~~~~I-~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~-------~c~~L~~i~lp~  320 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPD--SVVSI-GTGAFMNCPALQDIEFSS--RITELPESVFA-------GCISLKSIDIPE  320 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTT-------TCTTCCEEECCT
T ss_pred             ceEcccceeeecccccEEeccc--cccee-cCcccccccccccccCCC--cccccCceeec-------CCCCcCEEEeCC
Confidence            3444444556667777777654  23333 233445667777777742  25555443332       356777777764


Q ss_pred             cccccccccCcccccCCCccEEEEeCCCCccccCCC-CCCCCCcceEEecc
Q 036689          513 LDSLTSFCSGNYIFKFPSLEVLFVVGCPKMNIFTTG-ELSTPPRVDVMYRN  562 (595)
Q Consensus       513 ~~~l~~l~~~~~~~~~~~L~~L~l~~C~~l~~lp~~-~~~~~~L~~l~i~~  562 (595)
                        +++.+...++. .|.+|+.+.+-.  +++.++.. ..+|++|+.+.+.+
T Consensus       321 --~v~~I~~~aF~-~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          321 --GITQILDDAFA-GCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             --TCCEECTTTTT-TCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred             --cccEehHhHhh-CCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence              46666655543 467777777743  45555433 45677777777764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.85  E-value=0.0028  Score=64.50  Aligned_cols=297  Identities=11%  Similarity=0.094  Sum_probs=156.1

Q ss_pred             cccccccc-cccEEEeccCCCCccccccccccccCCCcEEEcccC--CCceEecCCCCCCCcCCcCCCccEEeccCccCc
Q 036689           15 SKKLQGIK-DVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNN--PDFMCIVDSKERVPLDDAFPILESLNLYNLIKL   91 (595)
Q Consensus        15 ~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~--~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l   91 (595)
                      ..+|...+ .|+.+.+-+.  ++.+... ...+|++|+.+.+..+  ..++.+...     .+..+.+|+.+.+.+  ++
T Consensus        56 ~~aF~~~~~~L~sI~iP~s--vt~Ig~~-AF~~C~~L~~i~~~~n~p~~l~~Ig~~-----aF~~c~~L~~i~~~~--~~  125 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT--VTEIGSN-AFYNCTSLKRVTIQDNKPSCVKKIGRQ-----AFMFCSELTDIPILD--SV  125 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT--CCEECTT-TTTTCTTCCEEEEGGGCCCCCCEECTT-----TTTTCTTCCBCGGGT--TC
T ss_pred             HhhccCCCCcCEEEEECCC--eeEEhHH-HhhCCccCceEeecCCCCCeeeEechh-----hchhcccceeeccCC--cc
Confidence            45555553 5888888543  2333322 2378899999998764  357777444     566677788777664  44


Q ss_pred             cccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEe
Q 036689           92 ERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLC  171 (595)
Q Consensus        92 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  171 (595)
                      +.+.  ...+..+.+|+.+.+..  .++.+.. ..+..+.+|+.+.+..  .+..+..          ..+...+|+++.
T Consensus       126 ~~I~--~~aF~~c~~L~~i~lp~--~~~~I~~-~~F~~c~~L~~i~~~~--~~~~I~~----------~aF~~~~l~~i~  188 (394)
T 4gt6_A          126 TEID--SEAFHHCEELDTVTIPE--GVTSVAD-GMFSYCYSLHTVTLPD--SVTAIEE----------RAFTGTALTQIH  188 (394)
T ss_dssp             SEEC--TTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEECCT--TCCEECT----------TTTTTCCCSEEE
T ss_pred             ceeh--hhhhhhhcccccccccc--eeeeecc-cceecccccccccccc--eeeEecc----------ccccccceeEEE
Confidence            5542  22356778888888864  3444432 5667788888887754  2333321          111223333333


Q ss_pred             c------------CCCCCccccccccccc-cccccccccccCccccccccccCCCccccccccCCccceeecccccceee
Q 036689          172 L------------GSLPELTSFCCEVKKN-RQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKI  238 (595)
Q Consensus       172 l------------~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  238 (595)
                      +            .+|..+.......... .........+...           ...+........+....+.. .++.+
T Consensus       189 ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ip~-~v~~i  256 (394)
T 4gt6_A          189 IPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANG-----------DYALIRYPSQREDPAFKIPN-GVARI  256 (394)
T ss_dssp             ECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTS-----------CEEEEECCTTCCCSEEECCT-TEEEE
T ss_pred             ECCcccccccchhhhccccceecccccccccccceeecccccc-----------cccccccccccccceEEcCC-cceEc
Confidence            3            2233333322111000 0000000000000           00000000112223333221 33444


Q ss_pred             cccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEee
Q 036689          239 WHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRL  318 (595)
Q Consensus       239 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L  318 (595)
                      +     ...|..+.+|+.+.+..  .+..+ ....+.+++.|+.+.+..  .++.++...+.+        +.+|+.+.|
T Consensus       257 ~-----~~aF~~c~~L~~i~lp~--~~~~I-~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~--------c~~L~~i~l  318 (394)
T 4gt6_A          257 E-----THAFDSCAYLASVKMPD--SVVSI-GTGAFMNCPALQDIEFSS--RITELPESVFAG--------CISLKSIDI  318 (394)
T ss_dssp             C-----TTTTTTCSSCCEEECCT--TCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTTT--------CTTCCEEEC
T ss_pred             c-----cceeeecccccEEeccc--cccee-cCcccccccccccccCCC--cccccCceeecC--------CCCcCEEEe
Confidence            2     22225678888888863  34443 233457888899888853  377777655554        788999988


Q ss_pred             cCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCC
Q 036689          319 VGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKD  396 (595)
Q Consensus       319 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~  396 (595)
                      ..  .++.+...... .|.+|+.+.+..  .++.+..                       ..+..+++|+.+++.++.
T Consensus       319 p~--~v~~I~~~aF~-~C~~L~~i~ip~--sv~~I~~-----------------------~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          319 PE--GITQILDDAFA-GCEQLERIAIPS--SVTKIPE-----------------------SAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CT--TCCEECTTTTT-TCTTCCEEEECT--TCCBCCG-----------------------GGGTTCTTCCEEEESSCH
T ss_pred             CC--cccEehHhHhh-CCCCCCEEEECc--ccCEEhH-----------------------hHhhCCCCCCEEEECCce
Confidence            64  24444333221 278888888853  2555555                       335678889998887753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.76  E-value=5.5e-05  Score=75.98  Aligned_cols=14  Identities=21%  Similarity=0.328  Sum_probs=6.9

Q ss_pred             hccCCCcEEEeecc
Q 036689          275 GSFEHLQHLEIRYC  288 (595)
Q Consensus       275 ~~l~~L~~L~l~~c  288 (595)
                      ..+|+|+.|.++++
T Consensus       169 ~~~P~L~~L~L~g~  182 (362)
T 2ra8_A          169 DAMPLLNNLKIKGT  182 (362)
T ss_dssp             HTCTTCCEEEEECC
T ss_pred             hcCCCCcEEEEeCC
Confidence            44455555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.65  E-value=0.00011  Score=73.69  Aligned_cols=68  Identities=15%  Similarity=0.260  Sum_probs=34.1

Q ss_pred             cCCccceeeccc-ccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecc
Q 036689          221 ALSNLEVLEMNK-VNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIIS  296 (595)
Q Consensus       221 ~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~  296 (595)
                      .+++|+.|+|++ |.++.+     +...+..+++|+.|+|+++ .++.+++. .+.++++|++|+|+++. ++.++.
T Consensus        29 ~~~~L~~L~l~~~n~l~~~-----~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~~~   97 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHL-----ELRDLRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFNA-LESLSW   97 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEE-----CGGGSCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSSC-CSCCCS
T ss_pred             CCCCeeEEEccCCCCCCCc-----ChhHhccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCCc-cceeCH
Confidence            344555666654 455554     3221234555666666543 45544332 33555566666665555 555443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.39  E-value=0.097  Score=52.56  Aligned_cols=106  Identities=12%  Similarity=0.137  Sum_probs=62.6

Q ss_pred             ccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccccc
Q 036689          249 LCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLY  328 (595)
Q Consensus       249 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~  328 (595)
                      ..+.+|+.+.+..  .++.+.. ..+.++.+|+.+.+..  +++.++...+.+        +++|+.+.+.+ ..++.+.
T Consensus       237 ~~~~~L~~i~lp~--~v~~I~~-~aF~~~~~l~~i~l~~--~i~~i~~~aF~~--------c~~L~~i~l~~-~~i~~I~  302 (379)
T 4h09_A          237 YGMKALDEIAIPK--NVTSIGS-FLLQNCTALKTLNFYA--KVKTVPYLLCSG--------CSNLTKVVMDN-SAIETLE  302 (379)
T ss_dssp             TTCSSCCEEEECT--TCCEECT-TTTTTCTTCCEEEECC--CCSEECTTTTTT--------CTTCCEEEECC-TTCCEEC
T ss_pred             cCCccceEEEcCC--CccEeCc-cccceeehhccccccc--cceecccccccc--------ccccccccccc-cccceeh
Confidence            3567788877763  3555433 3456777888887753  266665544433        77888888865 2244443


Q ss_pred             CCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccC
Q 036689          329 PGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDG  394 (595)
Q Consensus       329 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~  394 (595)
                      .... ..|.+|+.+.+..  .++.+..                       ..+..+.+|+.+.+..
T Consensus       303 ~~aF-~~c~~L~~i~lp~--~l~~I~~-----------------------~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          303 PRVF-MDCVKLSSVTLPT--ALKTIQV-----------------------YAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTT-TTCTTCCEEECCT--TCCEECT-----------------------TTTTTCTTCCCCCCCT
T ss_pred             hhhh-cCCCCCCEEEcCc--cccEEHH-----------------------HHhhCCCCCCEEEECC
Confidence            3321 1267788877743  2444444                       2345677788777754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.05  E-value=0.087  Score=52.90  Aligned_cols=104  Identities=13%  Similarity=0.147  Sum_probs=69.8

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGA  300 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  300 (595)
                      .+..|+.+.+..+ ++.++.     ..+..+.+|+.+.+.  .+++.+.. ..+..|++|+.+.+.++. ++.++...+.
T Consensus       238 ~~~~L~~i~lp~~-v~~I~~-----~aF~~~~~l~~i~l~--~~i~~i~~-~aF~~c~~L~~i~l~~~~-i~~I~~~aF~  307 (379)
T 4h09_A          238 GMKALDEIAIPKN-VTSIGS-----FLLQNCTALKTLNFY--AKVKTVPY-LLCSGCSNLTKVVMDNSA-IETLEPRVFM  307 (379)
T ss_dssp             TCSSCCEEEECTT-CCEECT-----TTTTTCTTCCEEEEC--CCCSEECT-TTTTTCTTCCEEEECCTT-CCEECTTTTT
T ss_pred             CCccceEEEcCCC-ccEeCc-----cccceeehhcccccc--ccceeccc-cccccccccccccccccc-cceehhhhhc
Confidence            4677888877654 555533     323567899999986  35666533 356899999999998776 8888775555


Q ss_pred             CCCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeec
Q 036689          301 DDQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVS  345 (595)
Q Consensus       301 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~  345 (595)
                      +        +.+|+.+.|..  .++.+..... ..|.+|+.+.+.
T Consensus       308 ~--------c~~L~~i~lp~--~l~~I~~~aF-~~C~~L~~i~ip  341 (379)
T 4h09_A          308 D--------CVKLSSVTLPT--ALKTIQVYAF-KNCKALSTISYP  341 (379)
T ss_dssp             T--------CTTCCEEECCT--TCCEECTTTT-TTCTTCCCCCCC
T ss_pred             C--------CCCCCEEEcCc--cccEEHHHHh-hCCCCCCEEEEC
Confidence            5        88999999954  2444433321 126777777664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.72  E-value=0.00083  Score=60.43  Aligned_cols=40  Identities=8%  Similarity=0.090  Sum_probs=19.8

Q ss_pred             cCCCCccEEEecCCCCccccc---chhhhhcCCCCcEEEEccc
Q 036689          102 QSFNELKTIRVELCDQLSNIF---LLSAAKCLPRLERIAVINC  141 (595)
Q Consensus       102 ~~l~~L~~L~L~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c  141 (595)
                      ...+.|++|+|++|+.+.+..   ....+...++|++|++++|
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n   75 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT   75 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC
Confidence            345566666666653443311   1123344556666666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.97  E-value=0.0016  Score=58.59  Aligned_cols=62  Identities=13%  Similarity=-0.021  Sum_probs=29.0

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccc---hhhhhccCCCcEEEe
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFS---ASMLGSFEHLQHLEI  285 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~---~~~~~~l~~L~~L~l  285 (595)
                      .++|++|++++|.+.+.+...+...+ ...++|++|+|+++ .+++.-.   ...+...+.|++|++
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEe
Confidence            45666667766655543222222222 23456666666654 3333110   112344455666666

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.95  E-value=0.0051  Score=58.49  Aligned_cols=43  Identities=19%  Similarity=0.161  Sum_probs=21.7

Q ss_pred             cCCCccEEEEecCCCCccccch-hhhhccCCCcEEEeeccccccee
Q 036689          250 CFQNLTRLILRKCPKLKYIFSA-SMLGSFEHLQHLEIRYCKGLQEI  294 (595)
Q Consensus       250 ~l~~L~~L~L~~c~~l~~l~~~-~~~~~l~~L~~L~l~~c~~l~~~  294 (595)
                      .+++|+.|+|+++ .++.+... ..+..+++|++|+++++. ++++
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~  211 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE  211 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCc
Confidence            3555666666542 44443221 133456666666666655 5444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.44  E-value=0.014  Score=55.38  Aligned_cols=12  Identities=17%  Similarity=0.144  Sum_probs=5.5

Q ss_pred             CCCCccEEEecC
Q 036689          103 SFNELKTIRVEL  114 (595)
Q Consensus       103 ~l~~L~~L~L~~  114 (595)
                      .+++|+.|+|++
T Consensus       194 ~l~~L~~L~Ls~  205 (267)
T 3rw6_A          194 KAPNLKILNLSG  205 (267)
T ss_dssp             HSTTCCEEECTT
T ss_pred             hCCCCCEEECCC
Confidence            344444444444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=83.03  E-value=1.8  Score=35.66  Aligned_cols=37  Identities=11%  Similarity=0.051  Sum_probs=27.6

Q ss_pred             CCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCC
Q 036689          105 NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRN  143 (595)
Q Consensus       105 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~  143 (595)
                      ++|++|+|++ +.++.++. ..+..+++|++|++.+++.
T Consensus        31 ~~l~~L~Ls~-N~l~~l~~-~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           31 VDTTELVLTG-NNLTALPP-GLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TTCSEEECTT-SCCSSCCT-TTGGGCTTCCEEECCSSCC
T ss_pred             cCCCEEECCC-CcCCccCh-hhhhhccccCEEEecCCCe
Confidence            4688888888 57777664 6677788888888887543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	595
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.75
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.52
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.52
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.47
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.43
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.42
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.42
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.42
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.41
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.37
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.31
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.27
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.26
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.25
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.21
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.9
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.85
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.71
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.65
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.59
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.04
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.57
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.11
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.49
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.04
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	86.96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1e-16  Score=162.43  Aligned_cols=58  Identities=14%  Similarity=0.184  Sum_probs=41.1

Q ss_pred             ccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccc
Q 036689          441 SVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLD  512 (595)
Q Consensus       441 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~  512 (595)
                      +..+++|+.|++++| .+++++   .++.+++|++|++++|. +++++. ..        .+++|+.|++++
T Consensus       325 l~~l~~L~~L~L~~n-~l~~l~---~l~~l~~L~~L~l~~N~-l~~l~~-l~--------~l~~L~~L~L~~  382 (384)
T d2omza2         325 VSSLTKLQRLFFANN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLTP-LA--------NLTRITQLGLND  382 (384)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCG---GGGGCTTCCEEECCSSC-CCBCGG-GT--------TCTTCSEEECCC
T ss_pred             cccCCCCCEEECCCC-CCCCCh---hHcCCCCCCEEECCCCc-CCCChh-hc--------cCCCCCEeeCCC
Confidence            455778888888885 666652   35678888888888775 666643 22        378888888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.6e-16  Score=161.06  Aligned_cols=81  Identities=19%  Similarity=0.220  Sum_probs=60.3

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      ..+.+|++|.++++ +++.+.       ....+++|++|+++++ +++.+.    +++.+++|++|++++| .+.+++  
T Consensus        41 ~~l~~l~~L~l~~~-~I~~l~-------gl~~L~nL~~L~Ls~N-~l~~l~----~l~~L~~L~~L~L~~n-~i~~i~--  104 (384)
T d2omza2          41 TDLDQVTTLQADRL-GIKSID-------GVEYLNNLTQINFSNN-QLTDIT----PLKNLTKLVDILMNNN-QIADIT--  104 (384)
T ss_dssp             HHHTTCCEEECCSS-CCCCCT-------TGGGCTTCCEEECCSS-CCCCCG----GGTTCTTCCEEECCSS-CCCCCG--
T ss_pred             HHhCCCCEEECCCC-CCCCcc-------ccccCCCCCEEeCcCC-cCCCCc----cccCCccccccccccc-cccccc--
Confidence            56788899999887 676541       3457888999999986 677652    2678889999999886 566553  


Q ss_pred             hhhhcCCCCcEEEEcccC
Q 036689          125 SAAKCLPRLERIAVINCR  142 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c~  142 (595)
                       .++++++|+.|++.++.
T Consensus       105 -~l~~l~~L~~L~~~~~~  121 (384)
T d2omza2         105 -PLANLTNLTGLTLFNNQ  121 (384)
T ss_dssp             -GGTTCTTCCEEECCSSC
T ss_pred             -ccccccccccccccccc
Confidence             36788889999887643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=6.3e-14  Score=136.91  Aligned_cols=108  Identities=16%  Similarity=0.142  Sum_probs=57.4

Q ss_pred             cCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCc
Q 036689          444 FRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGN  523 (595)
Q Consensus       444 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~  523 (595)
                      +++|+.|+++++. .....+ ..+..++.+++|+++++. +++++.....       .+++|++|+++++ .++.+|.+.
T Consensus       170 ~~~L~~L~l~~n~-~~~~~~-~~~~~~~~l~~L~~s~n~-l~~~~~~~~~-------~l~~L~~L~L~~N-~L~~lp~~l  238 (305)
T d1xkua_         170 PPSLTELHLDGNK-ITKVDA-ASLKGLNNLAKLGLSFNS-ISAVDNGSLA-------NTPHLRELHLNNN-KLVKVPGGL  238 (305)
T ss_dssp             CTTCSEEECTTSC-CCEECT-GGGTTCTTCCEEECCSSC-CCEECTTTGG-------GSTTCCEEECCSS-CCSSCCTTT
T ss_pred             CCccCEEECCCCc-CCCCCh-hHhhcccccccccccccc-cccccccccc-------ccccceeeecccc-ccccccccc
Confidence            3556666666533 232212 334555666666666654 5554333222       3566666666664 566665443


Q ss_pred             ccccCCCccEEEEeCCCCccccCCC-------CCCCCCcceEEeccCCC
Q 036689          524 YIFKFPSLEVLFVVGCPKMNIFTTG-------ELSTPPRVDVMYRNRGA  565 (595)
Q Consensus       524 ~~~~~~~L~~L~l~~C~~l~~lp~~-------~~~~~~L~~l~i~~~~~  565 (595)
                        ..+++|++|+++++ +++.++..       ....++|+.+.+++|..
T Consensus       239 --~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         239 --ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             --TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             --ccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence              23666666666664 45555432       12356677777765543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.59  E-value=8.4e-14  Score=136.01  Aligned_cols=58  Identities=26%  Similarity=0.275  Sum_probs=25.7

Q ss_pred             CCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcc
Q 036689           78 PILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN  140 (595)
Q Consensus        78 ~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~  140 (595)
                      +++++|+++++ +++++...  .+..+++|++|++++|. +..+++ ..+.++++|++|++++
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~--~f~~l~~L~~L~l~~n~-~~~i~~-~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          31 PDTALLDLQNN-KITEIKDG--DFKNLKNLHTLILINNK-ISKISP-GAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTCCEEECCSS-CCCCBCTT--TTTTCTTCCEEECCSSC-CCCBCT-TTTTTCTTCCEEECCS
T ss_pred             CCCCEEECcCC-cCCCcChh--Hhhcccccccccccccc-ccccch-hhhhCCCccCEecccC
Confidence            34555555553 44444211  13444555555555532 232322 3344455555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.53  E-value=1.2e-12  Score=130.14  Aligned_cols=249  Identities=17%  Similarity=0.102  Sum_probs=132.2

Q ss_pred             CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689          223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD  302 (595)
Q Consensus       223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  302 (595)
                      +.|++|++++|.+..+     |..  ..+++|+.|+++++. +...+     ...+.+..+.+..+. ......      
T Consensus        98 ~~L~~L~L~~n~l~~l-----p~~--~~l~~L~~L~l~~~~-~~~~~-----~~~~~l~~l~~~~~~-~~~~~~------  157 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEKL-----PEL--QNSSFLKIIDVDNNS-LKKLP-----DLPPSLEFIAAGNNQ-LEELPE------  157 (353)
T ss_dssp             TTCCEEECCSSCCSSC-----CCC--TTCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSC-CSSCCC------
T ss_pred             cccccccccccccccc-----cch--hhhccceeecccccc-ccccc-----cccccccchhhcccc-cccccc------
Confidence            3577788887766655     432  357788888887653 33222     223566667666554 222111      


Q ss_pred             CCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCc
Q 036689          303 QVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK  382 (595)
Q Consensus       303 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  382 (595)
                          ...++.++.+.+.++.. ..++..     ....+.+... +..+..++.                         ..
T Consensus       158 ----l~~l~~l~~L~l~~n~~-~~~~~~-----~~~~~~l~~~-~~~~~~~~~-------------------------~~  201 (353)
T d1jl5a_         158 ----LQNLPFLTAIYADNNSL-KKLPDL-----PLSLESIVAG-NNILEELPE-------------------------LQ  201 (353)
T ss_dssp             ----CTTCTTCCEEECCSSCC-SSCCCC-----CTTCCEEECC-SSCCSSCCC-------------------------CT
T ss_pred             ----ccccccceecccccccc-cccccc-----cccccccccc-ccccccccc-------------------------cc
Confidence                11266777777776432 222111     1222233222 222333333                         35


Q ss_pred             cCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCcccccc--CC---CCcccc-CCccEEeEeCCC
Q 036689          383 VFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLIL--LP---SSSVSF-RNLKILEVSGCK  456 (595)
Q Consensus       383 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~--~~---~~~~~l-~~L~~L~l~~c~  456 (595)
                      .++.|+.++++++.......      ...++..+.+......-.......+...  ..   ..+..+ ......++.. .
T Consensus       202 ~l~~L~~l~l~~n~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~-~  274 (353)
T d1jl5a_         202 NLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS-N  274 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCS-S
T ss_pred             cccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccchhccccccc-C
Confidence            67888888888876543221      2233444444321100000000000000  00   000001 1223334433 2


Q ss_pred             CCcccccchHHhhcccccEEEEcCcccccchhcccCccccccccccccccceeccccccccccccCcccccCCCccEEEE
Q 036689          457 KLTNLVASSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCSGNYIFKFPSLEVLFV  536 (595)
Q Consensus       457 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~L~~L~l  536 (595)
                      .+..+     ...+++|++|++++|. +++++.           .+++|+.|+++++ .+++++.     .+++|++|++
T Consensus       275 ~~~~~-----~~~~~~L~~L~Ls~N~-l~~lp~-----------~~~~L~~L~L~~N-~L~~l~~-----~~~~L~~L~L  331 (353)
T d1jl5a_         275 EIRSL-----CDLPPSLEELNVSNNK-LIELPA-----------LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHV  331 (353)
T ss_dssp             CCSEE-----CCCCTTCCEEECCSSC-CSCCCC-----------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEEC
T ss_pred             ccccc-----cccCCCCCEEECCCCc-cCcccc-----------ccCCCCEEECCCC-cCCcccc-----ccCCCCEEEC
Confidence            33333     1346789999999986 777753           2789999999886 6888873     2678999999


Q ss_pred             eCCCCccccCCCCCCCCCcceEEec
Q 036689          537 VGCPKMNIFTTGELSTPPRVDVMYR  561 (595)
Q Consensus       537 ~~C~~l~~lp~~~~~~~~L~~l~i~  561 (595)
                      ++|+ ++.+|..   +.+|+.|+++
T Consensus       332 ~~N~-L~~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         332 EYNP-LREFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CSSC-CSSCCCC---CTTCCEEECC
T ss_pred             cCCc-CCCCCcc---ccccCeeECc
Confidence            9986 8999863   4578888875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.7e-15  Score=144.95  Aligned_cols=64  Identities=23%  Similarity=0.230  Sum_probs=43.6

Q ss_pred             ccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCC
Q 036689          249 LCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGL  321 (595)
Q Consensus       249 ~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~  321 (595)
                      ..+++|++|++++|..+++.. ...+.++++|++|++++|..+++.......        .+|+|+.|++.+|
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~-~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~--------~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLLELG--------EIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGGGGG--------GCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCchh-hhhhcccCcCCEEECCCCCCCChHHHHHHh--------cCCCCCEEeeeCC
Confidence            356788888888887776542 334577888888888888766544332221        2788888888886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.52  E-value=8e-14  Score=136.72  Aligned_cols=129  Identities=13%  Similarity=0.073  Sum_probs=67.9

Q ss_pred             ceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCC
Q 036689          226 EVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVP  305 (595)
Q Consensus       226 ~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  305 (595)
                      +.+++++++++...    |..+ ..+ ....+++..+.. ....+. ..+.+++++.+++.++. +...++ ...     
T Consensus       177 ~~l~~~~n~l~~~~----~~~~-~~l-~~~~l~l~~~~~-~~~~~~-~~~~~~~l~~l~~~~~~-l~~~~~-~~~-----  241 (313)
T d1ogqa_         177 TSMTISRNRLTGKI----PPTF-ANL-NLAFVDLSRNML-EGDASV-LFGSDKNTQKIHLAKNS-LAFDLG-KVG-----  241 (313)
T ss_dssp             CEEECCSSEEEEEC----CGGG-GGC-CCSEEECCSSEE-EECCGG-GCCTTSCCSEEECCSSE-ECCBGG-GCC-----
T ss_pred             cccccccccccccc----cccc-ccc-cccccccccccc-cccccc-ccccccccccccccccc-cccccc-ccc-----
Confidence            55666666555431    2221 122 333455554432 222222 34566777777777665 443322 111     


Q ss_pred             CCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCC
Q 036689          306 PNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFP  385 (595)
Q Consensus       306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  385 (595)
                         .+++|+.|+++++.-...+|....  .+++|++|+++++..-..+|.                         .+.++
T Consensus       242 ---~~~~L~~L~Ls~N~l~g~iP~~l~--~L~~L~~L~Ls~N~l~g~iP~-------------------------~~~L~  291 (313)
T d1ogqa_         242 ---LSKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLNVSFNNLCGEIPQ-------------------------GGNLQ  291 (313)
T ss_dssp             ---CCTTCCEEECCSSCCEECCCGGGG--GCTTCCEEECCSSEEEEECCC-------------------------STTGG
T ss_pred             ---cccccccccCccCeecccCChHHh--CCCCCCEEECcCCcccccCCC-------------------------cccCC
Confidence               156777777777543334444322  267777777777643335555                         35667


Q ss_pred             CcceEeccCCCCee
Q 036689          386 NLEELGLDGKDIRM  399 (595)
Q Consensus       386 ~L~~L~l~~~~~~~  399 (595)
                      +|+.+++.+|+.+.
T Consensus       292 ~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         292 RFDVSAYANNKCLC  305 (313)
T ss_dssp             GSCGGGTCSSSEEE
T ss_pred             CCCHHHhCCCcccc
Confidence            77777777776543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.52  E-value=9.6e-14  Score=136.13  Aligned_cols=261  Identities=15%  Similarity=0.105  Sum_probs=147.4

Q ss_pred             ccccc-----ccccccEEEeccCCCCcc--ccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccC
Q 036689           15 SKKLQ-----GIKDVEYLCLDKSQDVKN--VLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYN   87 (595)
Q Consensus        15 ~~~~~-----~l~~L~~L~L~~~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~   87 (595)
                      ++||.     ...++.+|+|.++...+.  ++..+  +.+++|++|+|+++..+....|.     .+..+++|++|++++
T Consensus        38 w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l--~~L~~L~~L~Ls~~N~l~g~iP~-----~i~~L~~L~~L~Ls~  110 (313)
T d1ogqa_          38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPP-----AIAKLTQLHYLYITH  110 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGG--GGCTTCSEEEEEEETTEESCCCG-----GGGGCTTCSEEEEEE
T ss_pred             CCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHH--hcCcccccccccccccccccccc-----ccccccccchhhhcc
Confidence            56666     223689999998877543  44444  89999999999875456522132     467889999999999


Q ss_pred             ccCccccccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCccccccccccccccc
Q 036689           88 LIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQL  167 (595)
Q Consensus        88 ~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L  167 (595)
                      + ++..+...  .+..+.+|++++++++.....+|  ..+.+++.|++++++++.....+|..          ...+..+
T Consensus       111 N-~l~~~~~~--~~~~~~~L~~l~l~~N~~~~~~p--~~l~~l~~L~~l~l~~n~l~~~ip~~----------~~~l~~l  175 (313)
T d1ogqa_         111 T-NVSGAIPD--FLSQIKTLVTLDFSYNALSGTLP--PSISSLPNLVGITFDGNRISGAIPDS----------YGSFSKL  175 (313)
T ss_dssp             E-CCEEECCG--GGGGCTTCCEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCCEEECCGG----------GGCCCTT
T ss_pred             c-cccccccc--cccchhhhcccccccccccccCc--hhhccCcccceeeccccccccccccc----------ccccccc
Confidence            6 66655322  36778899999999865444333  67888999999999986655555432          2233343


Q ss_pred             -ceEecCCCCCccccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCcc
Q 036689          168 -STLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVA  246 (595)
Q Consensus       168 -~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~  246 (595)
                       +.+.+++. .+.......                              +   ..+ ....+++.++.....    .|..
T Consensus       176 ~~~l~~~~n-~l~~~~~~~------------------------------~---~~l-~~~~l~l~~~~~~~~----~~~~  216 (313)
T d1ogqa_         176 FTSMTISRN-RLTGKIPPT------------------------------F---ANL-NLAFVDLSRNMLEGD----ASVL  216 (313)
T ss_dssp             CCEEECCSS-EEEEECCGG------------------------------G---GGC-CCSEEECCSSEEEEC----CGGG
T ss_pred             ccccccccc-ccccccccc------------------------------c---ccc-ccccccccccccccc----cccc
Confidence             44444432 222111100                              0   011 223455555433221    1332


Q ss_pred             ccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCccc
Q 036689          247 MFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKC  326 (595)
Q Consensus       247 ~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~  326 (595)
                      + ..+++++.+++.++. +...++  .++.+++|++|++++|+ +++..+.....        +++|++|+|+++.--..
T Consensus       217 ~-~~~~~l~~l~~~~~~-l~~~~~--~~~~~~~L~~L~Ls~N~-l~g~iP~~l~~--------L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         217 F-GSDKNTQKIHLAKNS-LAFDLG--KVGLSKNLNGLDLRNNR-IYGTLPQGLTQ--------LKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             C-CTTSCCSEEECCSSE-ECCBGG--GCCCCTTCCEEECCSSC-CEECCCGGGGG--------CTTCCEEECCSSEEEEE
T ss_pred             c-ccccccccccccccc-cccccc--ccccccccccccCccCe-ecccCChHHhC--------CCCCCEEECcCCccccc
Confidence            2 345666666666543 332222  23556667777777666 55322212222        66677777766432223


Q ss_pred             ccCCCccccCcccceeeecCCCCccc
Q 036689          327 LYPGMHTSEWPALKLLDVSACDQVTV  352 (595)
Q Consensus       327 ~~~~~~~~~~~~L~~L~l~~c~~l~~  352 (595)
                      +|..   ..+++|+.+++.+++.+..
T Consensus       284 iP~~---~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         284 IPQG---GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCCS---TTGGGSCGGGTCSSSEEES
T ss_pred             CCCc---ccCCCCCHHHhCCCccccC
Confidence            4322   1256666666666665544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.47  E-value=7.9e-12  Score=124.01  Aligned_cols=95  Identities=19%  Similarity=0.056  Sum_probs=66.7

Q ss_pred             ccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccc
Q 036689           22 KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSV  101 (595)
Q Consensus        22 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  101 (595)
                      .+++.|+|++++. +.++ +    -.++|++|+++++ .++.++         ..+.+|++|++.++ .++.+..     
T Consensus        38 ~~l~~LdLs~~~L-~~lp-~----~~~~L~~L~Ls~N-~l~~lp---------~~~~~L~~L~l~~n-~l~~l~~-----   95 (353)
T d1jl5a_          38 RQAHELELNNLGL-SSLP-E----LPPHLESLVASCN-SLTELP---------ELPQSLKSLLVDNN-NLKALSD-----   95 (353)
T ss_dssp             HTCSEEECTTSCC-SCCC-S----CCTTCSEEECCSS-CCSSCC---------CCCTTCCEEECCSS-CCSCCCS-----
T ss_pred             cCCCEEEeCCCCC-CCCC-C----CCCCCCEEECCCC-CCcccc---------cchhhhhhhhhhhc-ccchhhh-----
Confidence            4688999988865 4443 2    3578999999887 677552         23578999999985 5655421     


Q ss_pred             cCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCC
Q 036689          102 QSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRN  143 (595)
Q Consensus       102 ~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~  143 (595)
                       -.+.|++|+++++ .++.++.   .+.+++|++|+++++..
T Consensus        96 -lp~~L~~L~L~~n-~l~~lp~---~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_          96 -LPPLLEYLGVSNN-QLEKLPE---LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             -CCTTCCEEECCSS-CCSSCCC---CTTCTTCCEEECCSSCC
T ss_pred             -hcccccccccccc-ccccccc---hhhhccceeeccccccc
Confidence             1246999999985 6776652   46788999999887543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-12  Score=124.99  Aligned_cols=176  Identities=19%  Similarity=0.182  Sum_probs=118.1

Q ss_pred             CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhh
Q 036689           48 LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA  127 (595)
Q Consensus        48 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~  127 (595)
                      +++++|+|++| .++.+++.     .+..+++|++|+++++ +++.+.    .++.+++|++|+++++ .++..+  ..+
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~-----~f~~l~~L~~L~L~~N-~l~~l~----~~~~l~~L~~L~Ls~N-~l~~~~--~~~   96 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFSLA-----TLMPYTRLTQLNLDRA-ELTKLQ----VDGTLPVLGTLDLSHN-QLQSLP--LLG   96 (266)
T ss_dssp             TTCCEEECTTS-CCSEEEGG-----GGTTCTTCCEEECTTS-CCCEEE----CCSCCTTCCEEECCSS-CCSSCC--CCT
T ss_pred             cCCCEEECcCC-cCCCcCHH-----Hhhccccccccccccc-cccccc----cccccccccccccccc-cccccc--ccc
Confidence            57888888887 67777543     4566778888888875 666652    1356778888888874 566554  456


Q ss_pred             hcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCccccccc
Q 036689          128 KCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISSLED  207 (595)
Q Consensus       128 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (595)
                      .++++|++|+++++.. ..++..                                                         
T Consensus        97 ~~l~~L~~L~l~~~~~-~~~~~~---------------------------------------------------------  118 (266)
T d1p9ag_          97 QTLPALTVLDVSFNRL-TSLPLG---------------------------------------------------------  118 (266)
T ss_dssp             TTCTTCCEEECCSSCC-CCCCSS---------------------------------------------------------
T ss_pred             cccccccccccccccc-ceeecc---------------------------------------------------------
Confidence            6777788887776432 211100                                                         


Q ss_pred             cccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeec
Q 036689          208 KLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRY  287 (595)
Q Consensus       208 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~  287 (595)
                             .+   ..+.+++.|++++|.++.+     |...+..+++|+.++++++ .++.+++ ..++.+++|++|++++
T Consensus       119 -------~~---~~l~~l~~L~l~~n~l~~l-----~~~~~~~l~~l~~l~l~~N-~l~~~~~-~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         119 -------AL---RGLGELQELYLKGNELKTL-----PPGLLTPTPKLEKLSLANN-NLTELPA-GLLNGLENLDTLLLQE  181 (266)
T ss_dssp             -------TT---TTCTTCCEEECTTSCCCCC-----CTTTTTTCTTCCEEECTTS-CCSCCCT-TTTTTCTTCCEEECCS
T ss_pred             -------cc---cccccccccccccccccee-----ccccccccccchhcccccc-cccccCc-cccccccccceeeccc
Confidence                   01   1366788888888877666     4433356788899998865 6766544 3567888899999998


Q ss_pred             ccccceecccccCCCCCCCCcCCCcccEEeecCCC
Q 036689          288 CKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLP  322 (595)
Q Consensus       288 c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~  322 (595)
                      +. ++.++.. ..        .+++|+.|+|++++
T Consensus       182 N~-L~~lp~~-~~--------~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         182 NS-LYTIPKG-FF--------GSHLLPFAFLHGNP  206 (266)
T ss_dssp             SC-CCCCCTT-TT--------TTCCCSEEECCSCC
T ss_pred             CC-CcccChh-HC--------CCCCCCEEEecCCC
Confidence            87 8877652 22        27788888888865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.8e-12  Score=124.97  Aligned_cols=85  Identities=18%  Similarity=0.147  Sum_probs=59.1

Q ss_pred             CCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccchhhh
Q 036689           48 LQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLLSAA  127 (595)
Q Consensus        48 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~  127 (595)
                      +++++|+|++| .++.+++.     .+..+++|++|+++++ ++..+...  ....+..++.+.....+.++.+++ ..+
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~~-----~f~~l~~L~~L~ls~n-~l~~i~~~--~~~~~~~~~~l~~~~~~~~~~l~~-~~~  101 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPAA-----SFRACRNLTILWLHSN-VLARIDAA--AFTGLALLEQLDLSDNAQLRSVDP-ATF  101 (284)
T ss_dssp             TTCSEEECTTS-CCCEECTT-----TTTTCTTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCSCTTCCCCCT-TTT
T ss_pred             CCCCEEECcCC-cCCCCCHH-----Hhhccccccccccccc-cccccccc--cccccccccccccccccccccccc-hhh
Confidence            56788888887 67777544     4667778888888874 56655322  245667788887777677776654 567


Q ss_pred             hcCCCCcEEEEcccC
Q 036689          128 KCLPRLERIAVINCR  142 (595)
Q Consensus       128 ~~l~~L~~L~l~~c~  142 (595)
                      +++++|++|++++|.
T Consensus       102 ~~l~~L~~L~l~~n~  116 (284)
T d1ozna_         102 HGLGRLHTLHLDRCG  116 (284)
T ss_dssp             TTCTTCCEEECTTSC
T ss_pred             cccccCCEEecCCcc
Confidence            778888888887754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.8e-12  Score=123.66  Aligned_cols=197  Identities=21%  Similarity=0.187  Sum_probs=114.8

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCC
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGAD  301 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  301 (595)
                      ...+.+.+.++++++.+     |..+   .+++++|+|+++ .++.+++ ..+.++++|++|+++++. ++.++...   
T Consensus         9 ~~~~~~v~C~~~~L~~i-----P~~l---p~~l~~L~Ls~N-~i~~l~~-~~f~~l~~L~~L~L~~N~-l~~l~~~~---   74 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTAL-----PPDL---PKDTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQVDG---   74 (266)
T ss_dssp             STTCCEEECTTSCCSSC-----CSCC---CTTCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTSC-CCEEECCS---
T ss_pred             cCCCeEEEccCCCCCee-----CcCc---CcCCCEEECcCC-cCCCcCH-HHhhcccccccccccccc-cccccccc---
Confidence            34445556666667666     7654   367899999874 6777644 356788999999999886 88775421   


Q ss_pred             CCCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcC
Q 036689          302 DQVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPE  381 (595)
Q Consensus       302 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  381 (595)
                             .+++|++|+++++. +...+..  ...+++|+.|+++++... .++.                       ...
T Consensus        75 -------~l~~L~~L~Ls~N~-l~~~~~~--~~~l~~L~~L~l~~~~~~-~~~~-----------------------~~~  120 (266)
T d1p9ag_          75 -------TLPVLGTLDLSHNQ-LQSLPLL--GQTLPALTVLDVSFNRLT-SLPL-----------------------GAL  120 (266)
T ss_dssp             -------CCTTCCEEECCSSC-CSSCCCC--TTTCTTCCEEECCSSCCC-CCCS-----------------------STT
T ss_pred             -------cccccccccccccc-ccccccc--cccccccccccccccccc-eeec-----------------------ccc
Confidence                   27889999998854 4443332  223678888888776432 2332                       223


Q ss_pred             ccCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCccc
Q 036689          382 KVFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNL  461 (595)
Q Consensus       382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~  461 (595)
                      ..+.++++|++++|....+.+.  ....+++|+.+++          ..++++.+++..+..+++|+.|++++ ++++.+
T Consensus       121 ~~l~~l~~L~l~~n~l~~l~~~--~~~~l~~l~~l~l----------~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~L~~l  187 (266)
T d1p9ag_         121 RGLGELQELYLKGNELKTLPPG--LLTPTPKLEKLSL----------ANNNLTELPAGLLNGLENLDTLLLQE-NSLYTI  187 (266)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEEC----------TTSCCSCCCTTTTTTCTTCCEEECCS-SCCCCC
T ss_pred             ccccccccccccccccceeccc--cccccccchhccc----------ccccccccCccccccccccceeeccc-CCCccc
Confidence            5667778888877754433221  1123444555555          33444444444445555555555555 345544


Q ss_pred             ccchHHhhcccccEEEEcCc
Q 036689          462 VASSAAQSLVALVKMQVFGC  481 (595)
Q Consensus       462 ~~~~~~~~l~~L~~L~l~~c  481 (595)
                      +. . +..+++|+.|+++++
T Consensus       188 p~-~-~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         188 PK-G-FFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CT-T-TTTTCCCSEEECCSC
T ss_pred             Ch-h-HCCCCCCCEEEecCC
Confidence            21 2 223455555555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.8e-14  Score=139.07  Aligned_cols=189  Identities=19%  Similarity=0.130  Sum_probs=104.9

Q ss_pred             cCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCCCCcCCCcccEEeecCCCCcccccC
Q 036689          250 CFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLVGLPELKCLYP  329 (595)
Q Consensus       250 ~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~  329 (595)
                      ...+|++|++++|. ++......++..+++|++|++++|. +++.......        .+++|++|++++|..+++...
T Consensus        44 ~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~--------~~~~L~~L~Ls~c~~itd~~l  113 (284)
T d2astb2          44 SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLA--------KNSNLVRLNLSGCSGFSEFAL  113 (284)
T ss_dssp             CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHT--------TCTTCSEEECTTCBSCCHHHH
T ss_pred             cCCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHh--------cCCCCcCcccccccccccccc
Confidence            34578888887763 3322223356777888888888875 5433221221        167788888888776654322


Q ss_pred             CCccccCcccceeeecCCCCcccc--ccccccccCCCCCCCCCCCCCCCCCCcCccCCCcceEeccCCCC-eeccCCCCC
Q 036689          330 GMHTSEWPALKLLDVSACDQVTVF--DSELFSFCESSEEDKPDIPAQQPLFLPEKVFPNLEELGLDGKDI-RMIWHGDFP  406 (595)
Q Consensus       330 ~~~~~~~~~L~~L~l~~c~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~  406 (595)
                      ......+++|++|++++|..++.-  ..                       .+...+++|+.|++++|.. ++.      
T Consensus       114 ~~l~~~~~~L~~L~ls~c~~~~~~~~~~-----------------------~~~~~~~~L~~L~l~~~~~~i~~------  164 (284)
T d2astb2         114 QTLLSSCSRLDELNLSWCFDFTEKHVQV-----------------------AVAHVSETITQLNLSGYRKNLQK------  164 (284)
T ss_dssp             HHHHHHCTTCCEEECCCCTTCCHHHHHH-----------------------HHHHSCTTCCEEECCSCGGGSCH------
T ss_pred             chhhHHHHhccccccccccccccccchh-----------------------hhcccccccchhhhccccccccc------
Confidence            112223677888888877665431  11                       0112356777777776532 110      


Q ss_pred             cccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccccchHHhhcccccEEEEcCcccccc
Q 036689          407 QHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLVASSAAQSLVALVKMQVFGCRAMTQ  486 (595)
Q Consensus       407 ~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~  486 (595)
                                              ..+..    ....+++|++|++++|..+++... ..+..+++|++|++++|..+++
T Consensus       165 ------------------------~~l~~----l~~~~~~L~~L~L~~~~~itd~~~-~~l~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         165 ------------------------SDLST----LVRRCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             ------------------------HHHHH----HHHHCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCG
T ss_pred             ------------------------ccccc----cccccccccccccccccCCCchhh-hhhcccCcCCEEECCCCCCCCh
Confidence                                    00000    112356777777777776665422 2335567777777777765544


Q ss_pred             hhcccCccccccccccccccceecccc
Q 036689          487 VVKSEGNQLAREEIVFNKLKMLSLLDL  513 (595)
Q Consensus       487 i~~~~~~~~~~~~~~l~~L~~L~l~~~  513 (595)
                      .......       .+|+|+.|++++|
T Consensus       216 ~~l~~L~-------~~~~L~~L~l~~~  235 (284)
T d2astb2         216 ETLLELG-------EIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGGG-------GCTTCCEEECTTS
T ss_pred             HHHHHHh-------cCCCCCEEeeeCC
Confidence            3222111       3677777777776

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.2e-12  Score=121.61  Aligned_cols=205  Identities=20%  Similarity=0.182  Sum_probs=137.2

Q ss_pred             CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689          223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD  302 (595)
Q Consensus       223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  302 (595)
                      +++++|++++|+++.+     |...+..+++|++|++++. .++.+... ....++.++++.+.....++.++...+.+ 
T Consensus        32 ~~~~~L~Ls~N~i~~i-----~~~~f~~l~~L~~L~ls~n-~l~~i~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-  103 (284)
T d1ozna_          32 AASQRIFLHGNRISHV-----PAASFRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHG-  103 (284)
T ss_dssp             TTCSEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTT-
T ss_pred             CCCCEEECcCCcCCCC-----CHHHhhccccccccccccc-cccccccc-cccccccccccccccccccccccchhhcc-
Confidence            5688999999988887     4433357888999999864 56665443 45777888888887777677776544433 


Q ss_pred             CCCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCc
Q 036689          303 QVPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEK  382 (595)
Q Consensus       303 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  382 (595)
                             +++|++|++.++.. ..++... ....++|+.+.+.++ .++.++.                       ..++
T Consensus       104 -------l~~L~~L~l~~n~~-~~~~~~~-~~~~~~L~~l~l~~N-~l~~i~~-----------------------~~f~  150 (284)
T d1ozna_         104 -------LGRLHTLHLDRCGL-QELGPGL-FRGLAALQYLYLQDN-ALQALPD-----------------------DTFR  150 (284)
T ss_dssp             -------CTTCCEEECTTSCC-CCCCTTT-TTTCTTCCEEECCSS-CCCCCCT-----------------------TTTT
T ss_pred             -------cccCCEEecCCccc-ccccccc-cchhcccchhhhccc-cccccCh-----------------------hHhc
Confidence                   78899999988653 3332221 222677888888765 3555655                       2345


Q ss_pred             cCCCcceEeccCCCCeeccCCCCCcccccCceeEEeeccccccccccCccccccCCCCccccCCccEEeEeCCCCCcccc
Q 036689          383 VFPNLEELGLDGKDIRMIWHGDFPQHLFGGLKVLQLKFDASAAVVSSCDNLLILLPSSSVSFRNLKILEVSGCKKLTNLV  462 (595)
Q Consensus       383 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~l~~~~~~~~~~l~~L~~L~l~~c~~l~~~~  462 (595)
                      .+++|++|++++|....+.+..  ...+++|+.+.+          ..+++..+.+..+..+++|+.|++++ +.+..++
T Consensus       151 ~~~~L~~L~l~~N~l~~l~~~~--f~~l~~L~~l~l----------~~N~l~~i~~~~f~~l~~L~~L~l~~-N~i~~~~  217 (284)
T d1ozna_         151 DLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLL----------HQNRVAHVHPHAFRDLGRLMTLYLFA-NNLSALP  217 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTT--TTTCTTCCEEEC----------CSSCCCEECTTTTTTCTTCCEEECCS-SCCSCCC
T ss_pred             cccchhhcccccCcccccchhh--hccccccchhhh----------hhccccccChhHhhhhhhcccccccc-ccccccc
Confidence            6788888988888755443322  235667777777          34556666666777777788888877 4566653


Q ss_pred             cchHHhhcccccEEEEcCcc
Q 036689          463 ASSAAQSLVALVKMQVFGCR  482 (595)
Q Consensus       463 ~~~~~~~l~~L~~L~l~~c~  482 (595)
                       ..+++.+++|++|++++++
T Consensus       218 -~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         218 -TEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             -HHHHTTCTTCCEEECCSSC
T ss_pred             -ccccccccccCEEEecCCC
Confidence             3455677778888777644

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=4.3e-12  Score=117.88  Aligned_cols=188  Identities=14%  Similarity=0.186  Sum_probs=108.0

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      ..+.+|++|.+.+| +++.+.       ....+++|++|+++++ .+..+    .++..+++|+++++++| .++++   
T Consensus        38 ~~l~~L~~L~l~~~-~i~~l~-------~l~~l~~L~~L~ls~n-~i~~~----~~l~~l~~l~~l~~~~n-~~~~i---  100 (227)
T d1h6ua2          38 ADLDGITTLSAFGT-GVTTIE-------GVQYLNNLIGLELKDN-QITDL----APLKNLTKITELELSGN-PLKNV---  100 (227)
T ss_dssp             HHHHTCCEEECTTS-CCCCCT-------TGGGCTTCCEEECCSS-CCCCC----GGGTTCCSCCEEECCSC-CCSCC---
T ss_pred             HHcCCcCEEECCCC-CCCcch-------hHhcCCCCcEeecCCc-eeecc----ccccccccccccccccc-ccccc---
Confidence            56778888888877 565441       3456788888888875 55543    12677788888888875 45554   


Q ss_pred             hhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCccccccccccccccccccccccCcccc
Q 036689          125 SAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELTSFCCEVKKNRQAQGMHETCSNKISS  204 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (595)
                      +.+.++++|+.+++++|..... .           .....+.++.+.++++.-...                        
T Consensus       101 ~~l~~l~~L~~l~l~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~~~~------------------------  144 (227)
T d1h6ua2         101 SAIAGLQSIKTLDLTSTQITDV-T-----------PLAGLSNLQVLYLDLNQITNI------------------------  144 (227)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCC-G-----------GGTTCTTCCEEECCSSCCCCC------------------------
T ss_pred             cccccccccccccccccccccc-c-----------hhccccchhhhhchhhhhchh------------------------
Confidence            3456778888888877543211 1           112234444444433221110                        


Q ss_pred             ccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEE
Q 036689          205 LEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLE  284 (595)
Q Consensus       205 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~  284 (595)
                                  .....+++|+.|.++++.+...     +. + ..+++|+.|+++++ .++++++   ++++++|++|+
T Consensus       145 ------------~~~~~~~~L~~L~l~~n~~~~~-----~~-l-~~l~~L~~L~Ls~n-~l~~l~~---l~~l~~L~~L~  201 (227)
T d1h6ua2         145 ------------SPLAGLTNLQYLSIGNAQVSDL-----TP-L-ANLSKLTTLKADDN-KISDISP---LASLPNLIEVH  201 (227)
T ss_dssp             ------------GGGGGCTTCCEEECCSSCCCCC-----GG-G-TTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEE
T ss_pred             ------------hhhccccccccccccccccccc-----hh-h-cccccceecccCCC-ccCCChh---hcCCCCCCEEE
Confidence                        0112355667777766655433     11 1 35677777777765 4555432   36667777777


Q ss_pred             eecccccceecccccCCCCCCCCcCCCcccEEeec
Q 036689          285 IRYCKGLQEIISKEGADDQVPPNFVFPQVTILRLV  319 (595)
Q Consensus       285 l~~c~~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~  319 (595)
                      +++|+ ++++++..          .+++|+.|+++
T Consensus       202 Ls~N~-lt~i~~l~----------~l~~L~~L~ls  225 (227)
T d1h6ua2         202 LKNNQ-ISDVSPLA----------NTSNLFIVTLT  225 (227)
T ss_dssp             CTTSC-CCBCGGGT----------TCTTCCEEEEE
T ss_pred             CcCCc-CCCCcccc----------cCCCCCEEEee
Confidence            77765 66654311          16666666664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=2.4e-11  Score=112.74  Aligned_cols=188  Identities=13%  Similarity=0.191  Sum_probs=140.1

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+.+|++|++.+++. +++ ..+  +.+++|++|++++| .++.+.       .+..+++|++++++++ .++.+.    
T Consensus        39 ~l~~L~~L~l~~~~i-~~l-~~l--~~l~~L~~L~ls~n-~i~~~~-------~l~~l~~l~~l~~~~n-~~~~i~----  101 (227)
T d1h6ua2          39 DLDGITTLSAFGTGV-TTI-EGV--QYLNNLIGLELKDN-QITDLA-------PLKNLTKITELELSGN-PLKNVS----  101 (227)
T ss_dssp             HHHTCCEEECTTSCC-CCC-TTG--GGCTTCCEEECCSS-CCCCCG-------GGTTCCSCCEEECCSC-CCSCCG----
T ss_pred             HcCCcCEEECCCCCC-Ccc-hhH--hcCCCCcEeecCCc-eeeccc-------cccccccccccccccc-cccccc----
Confidence            789999999999976 444 334  89999999999998 566442       4678899999999986 555542    


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecCCCCCcc
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLGSLPELT  179 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  179 (595)
                      .+..+++|+.+++++|. ....   ..+...+.++.+.+++|..... .           ....+++|+.|.++++.. .
T Consensus       102 ~l~~l~~L~~l~l~~~~-~~~~---~~~~~~~~~~~l~~~~~~~~~~-~-----------~~~~~~~L~~L~l~~n~~-~  164 (227)
T d1h6ua2         102 AIAGLQSIKTLDLTSTQ-ITDV---TPLAGLSNLQVLYLDLNQITNI-S-----------PLAGLTNLQYLSIGNAQV-S  164 (227)
T ss_dssp             GGTTCTTCCEEECTTSC-CCCC---GGGTTCTTCCEEECCSSCCCCC-G-----------GGGGCTTCCEEECCSSCC-C
T ss_pred             ccccccccccccccccc-cccc---chhccccchhhhhchhhhhchh-h-----------hhcccccccccccccccc-c
Confidence            36789999999999974 3434   4456788999999887543221 1           234567899998877542 2


Q ss_pred             ccccccccccccccccccccCccccccccccCCCccccccccCCccceeecccccceeecccCCCccccccCCCccEEEE
Q 036689          180 SFCCEVKKNRQAQGMHETCSNKISSLEDKLDISSPLFNEKVALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLIL  259 (595)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L  259 (595)
                      +.                                   .....+++|+.|++++|.++++     +. + ..+++|++|++
T Consensus       165 ~~-----------------------------------~~l~~l~~L~~L~Ls~n~l~~l-----~~-l-~~l~~L~~L~L  202 (227)
T d1h6ua2         165 DL-----------------------------------TPLANLSKLTTLKADDNKISDI-----SP-L-ASLPNLIEVHL  202 (227)
T ss_dssp             CC-----------------------------------GGGTTCTTCCEEECCSSCCCCC-----GG-G-GGCTTCCEEEC
T ss_pred             cc-----------------------------------hhhcccccceecccCCCccCCC-----hh-h-cCCCCCCEEEC
Confidence            11                                   1123588999999999988765     32 2 57899999999


Q ss_pred             ecCCCCccccchhhhhccCCCcEEEeec
Q 036689          260 RKCPKLKYIFSASMLGSFEHLQHLEIRY  287 (595)
Q Consensus       260 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~  287 (595)
                      ++| .++++++   ++++++|++|++++
T Consensus       203 s~N-~lt~i~~---l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         203 KNN-QISDVSP---LANTSNLFIVTLTN  226 (227)
T ss_dssp             TTS-CCCBCGG---GTTCTTCCEEEEEE
T ss_pred             cCC-cCCCCcc---cccCCCCCEEEeeC
Confidence            987 6887654   58999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.9e-11  Score=111.14  Aligned_cols=103  Identities=21%  Similarity=0.303  Sum_probs=58.0

Q ss_pred             ceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCC
Q 036689          226 EVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVP  305 (595)
Q Consensus       226 ~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  305 (595)
                      +.++.++.+++.+     |..+   .+++++|+++++ .++.++.. .+.++++|++|+++++.....++...+.+    
T Consensus        11 ~~i~c~~~~l~~i-----P~~l---~~~l~~L~Ls~n-~i~~l~~~-~f~~l~~L~~L~ls~n~~~~~i~~~~f~~----   76 (242)
T d1xwdc1          11 RVFLCQESKVTEI-----PSDL---PRNAIELRFVLT-KLRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSN----   76 (242)
T ss_dssp             SEEEEESCSCSSC-----CSCS---CSCCSEEEEESC-CCCEECTT-TTTTCTTCCEEEEESCTTCCEECSSSEES----
T ss_pred             CEEEEeCCCCCCc-----CCCC---CCCCCEEECcCC-cCCccChh-Hhhccchhhhhhhccccccceeecccccc----
Confidence            3455554455554     6543   456777777764 56655432 34667777777777776333343322222    


Q ss_pred             CCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCC
Q 036689          306 PNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSAC  347 (595)
Q Consensus       306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c  347 (595)
                          +++++++.+..+..+.....+. ...+++|+.+.+.++
T Consensus        77 ----l~~l~~l~~~~~n~l~~~~~~~-~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          77 ----LPKLHEIRIEKANNLLYINPEA-FQNLPNLQYLLISNT  113 (242)
T ss_dssp             ----CTTCCEEEEECCTTCCEECTTS-EECCTTCCEEEEESC
T ss_pred             ----cccccccccccccccccccccc-ccccccccccccchh
Confidence                6667777766665555544432 122566677766665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=8.8e-11  Score=109.88  Aligned_cols=85  Identities=18%  Similarity=0.260  Sum_probs=46.7

Q ss_pred             CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCC
Q 036689          223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADD  302 (595)
Q Consensus       223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  302 (595)
                      +++++|+++++.++.+     |.+.|..+++|++|+++++.....+ +...+..++.++++.+..+.++..++...+.+ 
T Consensus        29 ~~l~~L~Ls~n~i~~l-----~~~~f~~l~~L~~L~ls~n~~~~~i-~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~-  101 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVI-----QKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYINPEAFQN-  101 (242)
T ss_dssp             SCCSEEEEESCCCCEE-----CTTTTTTCTTCCEEEEESCTTCCEE-CSSSEESCTTCCEEEEECCTTCCEECTTSEEC-
T ss_pred             CCCCEEECcCCcCCcc-----ChhHhhccchhhhhhhcccccccee-eccccccccccccccccccccccccccccccc-
Confidence            3566666666666655     3332245666666666665433332 22234556666666666555555554432222 


Q ss_pred             CCCCCcCCCcccEEeecCC
Q 036689          303 QVPPNFVFPQVTILRLVGL  321 (595)
Q Consensus       303 ~~~~~~~l~~L~~L~L~~~  321 (595)
                             +++|+.+++.++
T Consensus       102 -------l~~L~~l~l~~~  113 (242)
T d1xwdc1         102 -------LPNLQYLLISNT  113 (242)
T ss_dssp             -------CTTCCEEEEESC
T ss_pred             -------cccccccccchh
Confidence                   666666666664

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=2.3e-11  Score=111.26  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=53.4

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      ..+.+|++|+++++ .++.+.       ....+++|++|+++++ +++.+.    +++.+++|++|++++| .++++   
T Consensus        43 ~~L~~L~~L~l~~~-~i~~l~-------~l~~l~~L~~L~L~~n-~i~~l~----~~~~l~~L~~L~l~~n-~i~~l---  105 (210)
T d1h6ta2          43 NELNSIDQIIANNS-DIKSVQ-------GIQYLPNVTKLFLNGN-KLTDIK----PLANLKNLGWLFLDEN-KVKDL---  105 (210)
T ss_dssp             HHHHTCCEEECTTS-CCCCCT-------TGGGCTTCCEEECCSS-CCCCCG----GGTTCTTCCEEECCSS-CCCCG---
T ss_pred             HHhcCccEEECcCC-CCCCch-------hHhhCCCCCEEeCCCc-cccCcc----ccccCccccccccccc-ccccc---
Confidence            45777888888777 555431       2456777888888775 555542    2566777888888774 56655   


Q ss_pred             hhhhcCCCCcEEEEcccC
Q 036689          125 SAAKCLPRLERIAVINCR  142 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c~  142 (595)
                      +.+..+++|+.|++.+|.
T Consensus       106 ~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2         106 SSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             GGGTTCTTCCEEECTTSC
T ss_pred             cccccccccccccccccc
Confidence            335667777777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.25  E-value=3.2e-11  Score=109.30  Aligned_cols=81  Identities=19%  Similarity=0.235  Sum_probs=52.0

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccch
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFLL  124 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~  124 (595)
                      ..++++++|+++++ +++.+.       ....+++|++|+++++ .++.+.    +++.+++|++|++++| .+..+   
T Consensus        37 ~~l~~l~~L~l~~~-~i~~l~-------~l~~l~nL~~L~Ls~N-~l~~~~----~l~~l~~L~~L~l~~n-~~~~~---   99 (199)
T d2omxa2          37 TDLDQVTTLQADRL-GIKSID-------GVEYLNNLTQINFSNN-QLTDIT----PLKNLTKLVDILMNNN-QIADI---   99 (199)
T ss_dssp             HHHTTCCEEECTTS-CCCCCT-------TGGGCTTCCEEECCSS-CCCCCG----GGTTCTTCCEEECCSS-CCCCC---
T ss_pred             HHhcCCCEEECCCC-CCCCcc-------ccccCCCcCcCccccc-cccCcc----cccCCccccccccccc-ccccc---
Confidence            45777888888777 555431       2456777777777775 565541    2567777777777775 34444   


Q ss_pred             hhhhcCCCCcEEEEcccC
Q 036689          125 SAAKCLPRLERIAVINCR  142 (595)
Q Consensus       125 ~~~~~l~~L~~L~l~~c~  142 (595)
                      +.++++++|++|++++|.
T Consensus       100 ~~l~~l~~L~~L~l~~~~  117 (199)
T d2omxa2         100 TPLANLTNLTGLTLFNNQ  117 (199)
T ss_dssp             GGGTTCTTCSEEECCSSC
T ss_pred             cccccccccccccccccc
Confidence            235667777777776643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=9.5e-11  Score=107.05  Aligned_cols=102  Identities=21%  Similarity=0.283  Sum_probs=79.3

Q ss_pred             ccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccc
Q 036689           20 GIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRL   99 (595)
Q Consensus        20 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~   99 (595)
                      .+++|++|++.++.. +.+. .+  +.+++|++|++++| .++.+.       ....+++|++|+++++ +++.+.    
T Consensus        44 ~L~~L~~L~l~~~~i-~~l~-~l--~~l~~L~~L~L~~n-~i~~l~-------~~~~l~~L~~L~l~~n-~i~~l~----  106 (210)
T d1h6ta2          44 ELNSIDQIIANNSDI-KSVQ-GI--QYLPNVTKLFLNGN-KLTDIK-------PLANLKNLGWLFLDEN-KVKDLS----  106 (210)
T ss_dssp             HHHTCCEEECTTSCC-CCCT-TG--GGCTTCCEEECCSS-CCCCCG-------GGTTCTTCCEEECCSS-CCCCGG----
T ss_pred             HhcCccEEECcCCCC-CCch-hH--hhCCCCCEEeCCCc-cccCcc-------ccccCccccccccccc-cccccc----
Confidence            578999999998876 3332 23  78999999999998 677553       3457899999999996 677652    


Q ss_pred             cccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689          100 SVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       100 ~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      .+..+++|+.|++++|. +..+   ..+.++++++.++++++.
T Consensus       107 ~l~~l~~L~~L~l~~~~-~~~~---~~l~~l~~l~~l~~~~n~  145 (210)
T d1h6ta2         107 SLKDLKKLKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNNK  145 (210)
T ss_dssp             GGTTCTTCCEEECTTSC-CCCC---GGGGGCTTCCEEECCSSC
T ss_pred             ccccccccccccccccc-cccc---cccccccccccccccccc
Confidence            36789999999999974 4544   456788999999988743

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=1.2e-10  Score=105.41  Aligned_cols=57  Identities=19%  Similarity=0.335  Sum_probs=28.5

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeeccc
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCK  289 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~  289 (595)
                      ++++++|++++++++.+     + ++ ..+++|++|+++++ .++++.+   ++++++|++|++++|.
T Consensus        39 l~~l~~L~l~~~~i~~l-----~-~l-~~l~nL~~L~Ls~N-~l~~~~~---l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI-----D-GV-EYLNNLTQINFSNN-QLTDITP---LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HTTCCEEECTTSCCCCC-----T-TG-GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC
T ss_pred             hcCCCEEECCCCCCCCc-----c-cc-ccCCCcCcCccccc-cccCccc---ccCCcccccccccccc
Confidence            44555566655555443     1 11 24555666666554 3444322   3555555555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.7e-09  Score=93.91  Aligned_cols=62  Identities=27%  Similarity=0.234  Sum_probs=32.4

Q ss_pred             CCccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeeccc
Q 036689          222 LSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCK  289 (595)
Q Consensus       222 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~  289 (595)
                      +++|++|++++|.++.+     +..++..+++|+.|+++++ .++++.....+..+++|++|++++|.
T Consensus        62 l~~L~~L~ls~N~i~~l-----~~~~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          62 LRRLKTLLVNNNRICRI-----GEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CSSCCEEECCSSCCCEE-----CSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG
T ss_pred             CcchhhhhcccccccCC-----Cccccccccccccceeccc-cccccccccccccccccchhhcCCCc
Confidence            45555566665555554     3322234566666666654 34443332334556666666666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=6.5e-09  Score=85.58  Aligned_cols=99  Identities=20%  Similarity=0.239  Sum_probs=51.9

Q ss_pred             cEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCC
Q 036689           25 EYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSF  104 (595)
Q Consensus        25 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l  104 (595)
                      |.|++++++.. .+ +.+  +.+++|++|++++| .++.+++      .+..+++|++|+++++ .++.+.    ++..+
T Consensus         1 R~L~Ls~n~l~-~l-~~l--~~l~~L~~L~ls~N-~l~~lp~------~~~~l~~L~~L~l~~N-~i~~l~----~~~~l   64 (124)
T d1dcea3           1 RVLHLAHKDLT-VL-CHL--EQLLLVTHLDLSHN-RLRALPP------ALAALRCLEVLQASDN-ALENVD----GVANL   64 (124)
T ss_dssp             SEEECTTSCCS-SC-CCG--GGGTTCCEEECCSS-CCCCCCG------GGGGCTTCCEEECCSS-CCCCCG----GGTTC
T ss_pred             CEEEcCCCCCC-CC-ccc--ccCCCCCEEECCCC-ccCcchh------hhhhhhcccccccccc-cccccC----ccccc
Confidence            34555555552 22 223  55666666666655 4554421      2345566666666663 454431    24556


Q ss_pred             CCccEEEecCCCCcccccchhhhhcCCCCcEEEEcc
Q 036689          105 NELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVIN  140 (595)
Q Consensus       105 ~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~  140 (595)
                      ++|++|++++ +.+++++....+..+++|++|++++
T Consensus        65 ~~L~~L~l~~-N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          65 PRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             SSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             cccCeEECCC-CccCCCCCchhhcCCCCCCEEECCC
Confidence            6666666666 3555444334455566666666665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=4.8e-09  Score=90.92  Aligned_cols=133  Identities=14%  Similarity=0.033  Sum_probs=93.9

Q ss_pred             cccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccccccc
Q 036689           19 QGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDR   98 (595)
Q Consensus        19 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~   98 (595)
                      ....++++|+|.++.. ..+. .. ...+++|++|+|++| .++.+.       .+..+++|++|+++++ .++.+..+ 
T Consensus        15 ~n~~~lr~L~L~~n~I-~~i~-~~-~~~l~~L~~L~Ls~N-~i~~l~-------~~~~l~~L~~L~ls~N-~i~~l~~~-   81 (162)
T d1a9na_          15 TNAVRDRELDLRGYKI-PVIE-NL-GATLDQFDAIDFSDN-EIRKLD-------GFPLLRRLKTLLVNNN-RICRIGEG-   81 (162)
T ss_dssp             ECTTSCEEEECTTSCC-CSCC-CG-GGGTTCCSEEECCSS-CCCEEC-------CCCCCSSCCEEECCSS-CCCEECSC-
T ss_pred             cCcCcCcEEECCCCCC-CccC-cc-ccccccCCEEECCCC-CCCccC-------CcccCcchhhhhcccc-cccCCCcc-
Confidence            3556799999999887 4443 22 267899999999998 788772       3567899999999996 67776322 


Q ss_pred             ccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccCCcceeecccCcccccccccccccccceEecC
Q 036689           99 LSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCRNIQEIFVVDGEYDAIDHQKIEFGQLSTLCLG  173 (595)
Q Consensus        99 ~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  173 (595)
                       ....+++|+.|++++| .+++++....++.+++|++|++++|+. ...+..      ....+..+++|+.|+-.
T Consensus        82 -~~~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i-~~~~~~------r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          82 -LDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPV-TNKKHY------RLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             -HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTH------HHHHHHHCTTCSEETTE
T ss_pred             -ccccccccccceeccc-cccccccccccccccccchhhcCCCcc-ccccch------HHHHHHHCCCcCeeCCC
Confidence             1356899999999995 677665445678899999999999653 322210      00123457888888643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.82  E-value=8.2e-09  Score=92.39  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             ccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccc
Q 036689           22 KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSV  101 (595)
Q Consensus        22 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  101 (595)
                      .++++|+|+++.....+ .....+++++|++|+|+++ .++.+.+.     .+..+++|++|+++++ +++.+..+  .+
T Consensus        29 ~~l~~L~Ls~N~i~~~~-~~~~f~~l~~L~~L~L~~N-~i~~~~~~-----~~~~~~~L~~L~Ls~N-~l~~l~~~--~F   98 (192)
T d1w8aa_          29 LHTTELLLNDNELGRIS-SDGLFGRLPHLVKLELKRN-QLTGIEPN-----AFEGASHIQELQLGEN-KIKEISNK--MF   98 (192)
T ss_dssp             TTCSEEECCSCCCCSBC-CSCSGGGCTTCCEEECCSS-CCCCBCTT-----TTTTCTTCCEEECCSC-CCCEECSS--SS
T ss_pred             CCCCEEEeCCCCCcccc-cccccCCCceEeeeecccc-cccccccc-----ccccccccceeeeccc-cccccCHH--HH
Confidence            57778888877663322 2222367778888888777 56555433     4566777888888874 66666433  25


Q ss_pred             cCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689          102 QSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       102 ~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      ..+++|++|+|++ +.++.+++ ..+..+++|++|++++++
T Consensus        99 ~~l~~L~~L~L~~-N~l~~i~~-~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          99 LGLHQLKTLNLYD-NQISCVMP-GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TTCTTCCEEECCS-SCCCEECT-TSSTTCTTCCEEECTTCC
T ss_pred             hCCCcccccccCC-ccccccCH-HHhcCCcccccccccccc
Confidence            6777888888887 46776654 566777778888777743

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3e-10  Score=116.55  Aligned_cols=116  Identities=15%  Similarity=0.141  Sum_probs=70.8

Q ss_pred             ccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccc--cc
Q 036689           22 KDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQD--RL   99 (595)
Q Consensus        22 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~   99 (595)
                      .+|++|++++++....-...+ .+.++++++|+|.+| +++... ...........++|++|+|+++ .+......  ..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l-~~~l~~l~~L~L~~~-~i~~~~-~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~   77 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAEL-LPLLQQCQVVRLDDC-GLTEAR-CKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHH-HHHHTTCSEEEEESS-CCCHHH-HHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH
T ss_pred             CCCCEEEeeCCcCChHHHHHH-HHhCCCCCEEEeCCC-CCCHHH-HHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHH
Confidence            468999997777643222222 378899999999998 565210 0000112356788999999986 55431100  00


Q ss_pred             cc-cCCCCccEEEecCCCCcccccc---hhhhhcCCCCcEEEEcccC
Q 036689          100 SV-QSFNELKTIRVELCDQLSNIFL---LSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       100 ~~-~~l~~L~~L~L~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~  142 (595)
                      .+ ....+|++|++++| .+++...   ...+..+++|++|++++|.
T Consensus        78 ~l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHhcCCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc
Confidence            01 12357999999997 4665321   1345678899999998854

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=2.6e-08  Score=81.81  Aligned_cols=120  Identities=20%  Similarity=0.196  Sum_probs=84.7

Q ss_pred             ceecccccccccCcccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCcc
Q 036689            2 RTLKLKFNSVSICSKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILE   81 (595)
Q Consensus         2 ~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~   81 (595)
                      |.|+|+.|.++. ..+++.+++|++|+++++.. +.++..+  +.+++|++|++++| .++.++       .+..+++|+
T Consensus         1 R~L~Ls~n~l~~-l~~l~~l~~L~~L~ls~N~l-~~lp~~~--~~l~~L~~L~l~~N-~i~~l~-------~~~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRL-RALPPAL--AALRCLEVLQASDN-ALENVD-------GVANLPRLQ   68 (124)
T ss_dssp             SEEECTTSCCSS-CCCGGGGTTCCEEECCSSCC-CCCCGGG--GGCTTCCEEECCSS-CCCCCG-------GGTTCSSCC
T ss_pred             CEEEcCCCCCCC-CcccccCCCCCEEECCCCcc-Ccchhhh--hhhhcccccccccc-cccccC-------ccccccccC
Confidence            678888886532 33577888999999988876 4555445  78999999999988 677552       356788999


Q ss_pred             EEeccCccCccccccccccccCCCCccEEEecCCCCccccc--chhhhhcCCCCcEE
Q 036689           82 SLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIF--LLSAAKCLPRLERI  136 (595)
Q Consensus        82 ~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~--~~~~~~~l~~L~~L  136 (595)
                      +|+++++ .+..+.. ...+..+++|++|++++ +.++..+  .......+|+|+.|
T Consensus        69 ~L~l~~N-~i~~~~~-~~~l~~~~~L~~L~l~~-N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          69 ELLLCNN-RLQQSAA-IQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             EEECCSS-CCCSSST-TGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             eEECCCC-ccCCCCC-chhhcCCCCCCEEECCC-CcCCcCccHHHHHHHHCcCcceE
Confidence            9999985 6666532 12367788999999988 4555432  22455667777766

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.65  E-value=7.3e-08  Score=85.95  Aligned_cols=129  Identities=20%  Similarity=0.237  Sum_probs=87.0

Q ss_pred             ceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCCCC
Q 036689          226 EVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQVP  305 (595)
Q Consensus       226 ~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  305 (595)
                      .+++.++++++.+     |.++   .+++++|+|++. .++...+...++.+++|++|+++++. +..++...+..    
T Consensus        11 ~~v~Cs~~~L~~i-----P~~l---p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~----   76 (192)
T d1w8aa_          11 TTVDCTGRGLKEI-----PRDI---PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEG----   76 (192)
T ss_dssp             TEEECTTSCCSSC-----CSCC---CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTT----
T ss_pred             CEEEEeCCCcCcc-----CCCC---CCCCCEEEeCCC-CCcccccccccCCCceEeeeeccccc-ccccccccccc----
Confidence            3566666666666     7654   467888888864 55543344456788888888888877 66665533333    


Q ss_pred             CCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCCCccccccccccccCCCCCCCCCCCCCCCCCCcCccCC
Q 036689          306 PNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACDQVTVFDSELFSFCESSEEDKPDIPAQQPLFLPEKVFP  385 (595)
Q Consensus       306 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  385 (595)
                          +++|++|+++++ ++..++.+.. ..+++|+.|+++++ .++.++.                       ..+..++
T Consensus        77 ----~~~L~~L~Ls~N-~l~~l~~~~F-~~l~~L~~L~L~~N-~l~~i~~-----------------------~~f~~l~  126 (192)
T d1w8aa_          77 ----ASHIQELQLGEN-KIKEISNKMF-LGLHQLKTLNLYDN-QISCVMP-----------------------GSFEHLN  126 (192)
T ss_dssp             ----CTTCCEEECCSC-CCCEECSSSS-TTCTTCCEEECCSS-CCCEECT-----------------------TSSTTCT
T ss_pred             ----ccccceeeeccc-cccccCHHHH-hCCCcccccccCCc-cccccCH-----------------------HHhcCCc
Confidence                778888888884 5666655532 23788888888876 4666666                       3346778


Q ss_pred             CcceEeccCCCCe
Q 036689          386 NLEELGLDGKDIR  398 (595)
Q Consensus       386 ~L~~L~l~~~~~~  398 (595)
                      +|++|++++|+..
T Consensus       127 ~L~~l~L~~N~~~  139 (192)
T d1w8aa_         127 SLTSLNLASNPFN  139 (192)
T ss_dssp             TCCEEECTTCCBC
T ss_pred             ccccccccccccc
Confidence            8888888888643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.2e-09  Score=109.84  Aligned_cols=115  Identities=14%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             ceecccccccccC--cccccccccccEEEeccCCCCccccc-cc--cccccCCCcEEEcccCCCceEecCCCCCCCcCCc
Q 036689            2 RTLKLKFNSVSIC--SKKLQGIKDVEYLCLDKSQDVKNVLF-DL--DREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDA   76 (595)
Q Consensus         2 ~~l~l~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~-~~--~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~   76 (595)
                      +.|+|+.+.++-.  .+-++.+++++.|+|.+|.. ++... .+  ....+++|++|+|++| .++...-..........
T Consensus         5 ~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i-~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           5 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL-TEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCC-CHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCST
T ss_pred             CEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCC-CHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcC
Confidence            4577776654322  22233789999999999965 32211 11  1267899999999998 55421000000001123


Q ss_pred             CCCccEEeccCccCccccccc--cccccCCCCccEEEecCCCCccc
Q 036689           77 FPILESLNLYNLIKLERICQD--RLSVQSFNELKTIRVELCDQLSN  120 (595)
Q Consensus        77 ~~~L~~L~l~~~~~l~~~~~~--~~~~~~l~~L~~L~L~~c~~l~~  120 (595)
                      ..+|++|++++| .++.....  ...+..+++|++|++++| .+.+
T Consensus        83 ~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGD  126 (460)
T ss_dssp             TCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHH
T ss_pred             CCCCCEEECCCC-Cccccccccccchhhccccccccccccc-cchh
Confidence            457999999997 56543211  122567899999999996 4554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.49  E-value=1.6e-09  Score=97.42  Aligned_cols=111  Identities=18%  Similarity=0.240  Sum_probs=84.9

Q ss_pred             cccccccccccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCcccc
Q 036689           15 SKKLQGIKDVEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERI   94 (595)
Q Consensus        15 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~   94 (595)
                      +.+++.+++|++|+|+++.. +.+ +.+  +.+++|++|+|++| .++.++ .     ....+++|++|+++++ .++.+
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I-~~i-~~l--~~l~~L~~L~Ls~N-~i~~i~-~-----~~~~~~~L~~L~l~~N-~i~~l  108 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNI-EKI-SSL--SGMENLRILSLGRN-LIKKIE-N-----LDAVADTLEELWISYN-QIASL  108 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEE-SCC-CCH--HHHTTCCEEECCEE-EECSCS-S-----HHHHHHHCCEEECSEE-ECCCH
T ss_pred             hhHHhcccccceeECcccCC-CCc-ccc--cCCccccChhhccc-cccccc-c-----cccccccccccccccc-ccccc
Confidence            34566789999999998876 444 334  78999999999998 566442 1     3345678999999996 67765


Q ss_pred             ccccccccCCCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689           95 CQDRLSVQSFNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus        95 ~~~~~~~~~l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      .    ++..+++|++|+++++ .+++++....++.+++|++|++++|+
T Consensus       109 ~----~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         109 S----GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             H----HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             c----cccccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence            1    2677899999999994 67766544567899999999999964

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.31  E-value=2.8e-08  Score=89.04  Aligned_cols=59  Identities=19%  Similarity=0.143  Sum_probs=29.3

Q ss_pred             CccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeeccc
Q 036689          223 SNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCK  289 (595)
Q Consensus       223 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~  289 (595)
                      +.|+.|++++|+++.+     +..  ..+++|+.|+++++ .++++.....+..+++|++|++++++
T Consensus        93 ~~L~~L~l~~N~i~~l-----~~~--~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          93 DTLEELWISYNQIASL-----SGI--EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHCCEEECSEEECCCH-----HHH--HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccccccccccccc-----ccc--cccccccccccccc-hhccccccccccCCCccceeecCCCc
Confidence            3455666666555443     211  24555666666543 33333222334555566666665554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.3e-06  Score=72.94  Aligned_cols=105  Identities=13%  Similarity=0.147  Sum_probs=71.5

Q ss_pred             ccEEEeccCCCCccccccccccccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccC
Q 036689           24 VEYLCLDKSQDVKNVLFDLDREGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQS  103 (595)
Q Consensus        24 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  103 (595)
                      .+.++..+.+. .+.+..+  .++++|++|++.++..++.+.+.     .+..+++|++|+++++ +++.+..+  .+..
T Consensus        10 ~~~l~c~~~~~-~~~p~~l--~~l~~l~~L~l~~n~~l~~i~~~-----~f~~l~~L~~L~Ls~N-~l~~i~~~--~f~~   78 (156)
T d2ifga3          10 SSGLRCTRDGA-LDSLHHL--PGAENLTELYIENQQHLQHLELR-----DLRGLGELRNLTIVKS-GLRFVAPD--AFHF   78 (156)
T ss_dssp             SSCEECCSSCC-CTTTTTS--CSCSCCSEEECCSCSSCCEECGG-----GSCSCCCCSEEECCSS-CCCEECTT--GGGS
T ss_pred             CCeEEecCCCC-ccCcccc--cCccccCeeecCCCccccccCch-----hhccccccCcceeecc-ccCCcccc--cccc
Confidence            34566655544 3334444  67788888888777678887544     5667888888888885 77776333  3677


Q ss_pred             CCCccEEEecCCCCcccccchhhhhcCCCCcEEEEcccC
Q 036689          104 FNELKTIRVELCDQLSNIFLLSAAKCLPRLERIAVINCR  142 (595)
Q Consensus       104 l~~L~~L~L~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~  142 (595)
                      +++|++|+|++ +.++.++. ..+.. ..|++|++++++
T Consensus        79 l~~L~~L~Ls~-N~l~~l~~-~~~~~-~~l~~L~L~~Np  114 (156)
T d2ifga3          79 TPRLSRLNLSF-NALESLSW-KTVQG-LSLQELVLSGNP  114 (156)
T ss_dssp             CSCCCEEECCS-SCCSCCCS-TTTCS-CCCCEEECCSSC
T ss_pred             cccccceeccC-CCCcccCh-hhhcc-ccccccccCCCc
Confidence            88888888888 57776664 44443 468888888754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.22  E-value=5.7e-08  Score=95.38  Aligned_cols=122  Identities=18%  Similarity=0.122  Sum_probs=62.1

Q ss_pred             cCCccceeecccccceeecccC-CCccccccCCCccEEEEecCCCCcccc---chhhhhccCCCcEEEeecccccceecc
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQ-LPVAMFLCFQNLTRLILRKCPKLKYIF---SASMLGSFEHLQHLEIRYCKGLQEIIS  296 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~-~~~~~~~~l~~L~~L~L~~c~~l~~l~---~~~~~~~l~~L~~L~l~~c~~l~~~~~  296 (595)
                      ..+.|+.|++++|.++..+... +...+ ..+++|+.|+++++. ++...   ....+..+++|++|++++|. +++...
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l-~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~  260 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGA  260 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTG-GGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhh-cchhhhccccccccc-ccccccccccccccccccchhhhhhcCc-cCchhh
Confidence            3566777777777655321111 11111 356778888887653 33211   11234667778888888776 554322


Q ss_pred             cccCCCCCCCCcCCCcccEEeecCCCCcccccCC----CccccCcccceeeecCCC
Q 036689          297 KEGADDQVPPNFVFPQVTILRLVGLPELKCLYPG----MHTSEWPALKLLDVSACD  348 (595)
Q Consensus       297 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~----~~~~~~~~L~~L~l~~c~  348 (595)
                      ......  ......+.|++|+++++. +......    .....+++|+.|+++++.
T Consensus       261 ~~l~~~--l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         261 AAVVDA--FSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHH--HHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHH--hhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            111100  000114668888888754 4321100    011125778888887754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.5e-06  Score=72.73  Aligned_cols=106  Identities=18%  Similarity=0.055  Sum_probs=68.0

Q ss_pred             ccceeecccccceeecccCCCccccccCCCccEEEEecCCCCccccchhhhhccCCCcEEEeecccccceecccccCCCC
Q 036689          224 NLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKCPKLKYIFSASMLGSFEHLQHLEIRYCKGLQEIISKEGADDQ  303 (595)
Q Consensus       224 ~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  303 (595)
                      ..+.++.++.++.+.     |..+ ..+++|++|++.+.+.++.+.+. .+.++++|++|+++++. ++.+++..+.+  
T Consensus         9 ~~~~l~c~~~~~~~~-----p~~l-~~l~~l~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~--   78 (156)
T d2ifga3           9 GSSGLRCTRDGALDS-----LHHL-PGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSG-LRFVAPDAFHF--   78 (156)
T ss_dssp             SSSCEECCSSCCCTT-----TTTS-CSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSSC-CCEECTTGGGS--
T ss_pred             CCCeEEecCCCCccC-----cccc-cCccccCeeecCCCccccccCch-hhccccccCcceeeccc-cCCcccccccc--
Confidence            344556555544443     4443 35677888888766667776443 45777888888888776 77776644443  


Q ss_pred             CCCCcCCCcccEEeecCCCCcccccCCCccccCcccceeeecCCC
Q 036689          304 VPPNFVFPQVTILRLVGLPELKCLYPGMHTSEWPALKLLDVSACD  348 (595)
Q Consensus       304 ~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~  348 (595)
                            +++|++|+|++ ++++.++.+...  ..+|++|++++.+
T Consensus        79 ------l~~L~~L~Ls~-N~l~~l~~~~~~--~~~l~~L~L~~Np  114 (156)
T d2ifga3          79 ------TPRLSRLNLSF-NALESLSWKTVQ--GLSLQELVLSGNP  114 (156)
T ss_dssp             ------CSCCCEEECCS-SCCSCCCSTTTC--SCCCCEEECCSSC
T ss_pred             ------cccccceeccC-CCCcccChhhhc--cccccccccCCCc
Confidence                  77888888887 446666655432  4467788887664

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.04  E-value=4e-07  Score=89.12  Aligned_cols=41  Identities=12%  Similarity=0.079  Sum_probs=20.8

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKC  262 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c  262 (595)
                      ..++|+.|++++|.+...+...+...+ ...++|++|++++|
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~l~~n  131 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFL-SKHTPLEHLYLHNN  131 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHH-HHCTTCCEEECCSS
T ss_pred             hCCCcccccccccccccccccchhhhh-cccccchheecccc
Confidence            355666666666654432222222221 34566777777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.00085  Score=56.77  Aligned_cols=85  Identities=22%  Similarity=0.234  Sum_probs=58.7

Q ss_pred             cccCCCcEEEcccCCCceEecCCCCCCCcCCcCCCccEEeccCccCccccccccccccCCCCccEEEecCCCCcccccc-
Q 036689           45 EGFLQLKHLHVQNNPDFMCIVDSKERVPLDDAFPILESLNLYNLIKLERICQDRLSVQSFNELKTIRVELCDQLSNIFL-  123 (595)
Q Consensus        45 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~L~~c~~l~~~~~-  123 (595)
                      ..+++|++|+|++| .++.+.+   ....+..+++|+.|+++++ .++.+....  .....+|+.|++++++ +..... 
T Consensus        62 ~~~~~L~~L~Ls~N-~i~~l~~---~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~--~l~~~~L~~L~L~~Np-l~~~~~~  133 (162)
T d1koha1          62 ENIPELLSLNLSNN-RLYRLDD---MSSIVQKAPNLKILNLSGN-ELKSERELD--KIKGLKLEELWLDGNS-LSDTFRD  133 (162)
T ss_dssp             HHCTTCCCCCCCSS-CCCCCSG---GGTHHHHSTTCCCCCCTTS-CCCCGGGHH--HHTTCCCSSCCCTTST-TSSSSSS
T ss_pred             HhCCCCCEeeCCCc-cccCCch---hHHHHhhCCcccccccccC-ccccchhhh--hhhccccceeecCCCC-cCcCccc
Confidence            57999999999999 6775521   1113457899999999995 777763321  2345679999999954 433221 


Q ss_pred             -----hhhhhcCCCCcEEE
Q 036689          124 -----LSAAKCLPRLERIA  137 (595)
Q Consensus       124 -----~~~~~~l~~L~~L~  137 (595)
                           ...++.+|+|+.||
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence                 14567899999996

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0022  Score=54.13  Aligned_cols=84  Identities=24%  Similarity=0.154  Sum_probs=51.0

Q ss_pred             ccCCccEEeEeCCCCCccccc-chHHhhcccccEEEEcCcccccchhcccCccccccccccccccceecccccccccccc
Q 036689          443 SFRNLKILEVSGCKKLTNLVA-SSAAQSLVALVKMQVFGCRAMTQVVKSEGNQLAREEIVFNKLKMLSLLDLDSLTSFCS  521 (595)
Q Consensus       443 ~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~  521 (595)
                      .+++|+.|++++ ++++++.. ...++.+++|+.|+++++. ++++.....       .....|+.|++.++|-......
T Consensus        63 ~~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~-------l~~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          63 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDK-------IKGLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HCTTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHH-------HTTCCCSSCCCTTSTTSSSSSS
T ss_pred             hCCCCCEeeCCC-ccccCCchhHHHHhhCCcccccccccCc-cccchhhhh-------hhccccceeecCCCCcCcCccc
Confidence            467888888888 56776532 2445678888888888876 666543211       1245688888888653322211


Q ss_pred             C-----cccccCCCccEEE
Q 036689          522 G-----NYIFKFPSLEVLF  535 (595)
Q Consensus       522 ~-----~~~~~~~~L~~L~  535 (595)
                      .     .....+|+|++|+
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence            1     0113477777775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.11  E-value=0.0065  Score=51.30  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=16.8

Q ss_pred             CCCccEEEecCCCCccccc---chhhhhcCCCCcEEEEccc
Q 036689          104 FNELKTIRVELCDQLSNIF---LLSAAKCLPRLERIAVINC  141 (595)
Q Consensus       104 l~~L~~L~L~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c  141 (595)
                      .+.|++|+|++++.+....   ....+...+.|++|++++|
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT   54 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence            3555555555543333211   0123334445555555553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.49  E-value=0.011  Score=49.59  Aligned_cols=38  Identities=11%  Similarity=0.128  Sum_probs=17.4

Q ss_pred             CCCccEEEecCCCCcccccc---hhhhhcCCCCcEEEEccc
Q 036689          104 FNELKTIRVELCDQLSNIFL---LSAAKCLPRLERIAVINC  141 (595)
Q Consensus       104 l~~L~~L~L~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c  141 (595)
                      .+.|++|+++++..++....   ...+...++|++|++++|
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n   56 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT   56 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC
Confidence            45555666655433433111   122234555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.04  E-value=0.018  Score=48.34  Aligned_cols=15  Identities=13%  Similarity=0.297  Sum_probs=7.9

Q ss_pred             CCccceeecccccce
Q 036689          222 LSNLEVLEMNKVNIE  236 (595)
Q Consensus       222 l~~L~~L~l~~~~l~  236 (595)
                      .+.|++|++++|.+.
T Consensus        43 n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          43 SKHIEKFSLANTAIS   57 (167)
T ss_dssp             CSCCCEEECTTSCCB
T ss_pred             CCccceeeccccccc
Confidence            445555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=86.96  E-value=0.11  Score=43.03  Aligned_cols=41  Identities=7%  Similarity=-0.021  Sum_probs=17.9

Q ss_pred             cCCccceeecccccceeecccCCCccccccCCCccEEEEecC
Q 036689          221 ALSNLEVLEMNKVNIEKIWHNQLPVAMFLCFQNLTRLILRKC  262 (595)
Q Consensus       221 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~c  262 (595)
                      ..++|++|++++|.+...+...+...+ ...++++.+++.+|
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l-~~~~~l~~l~l~~~   84 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESN   84 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSS
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHH-hhcccchhhhhccc
Confidence            345566666665544432221111111 23445555555544