Citrus Sinensis ID: 036691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
Protein Sequence
MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQAAVKELLVDQVALQDDRTLADYGMDLSEKVVLVF
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHccccccccEEEEccEEcccccccccccccccEEEEEEEcccccEEEEEEccccccEEcccccccHHHHHHHHcHHHcccccccEEEEEcccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEcccccHHHHHHHHHHHccccccccEEEEEccEEcccccccccccccccccccccccccEEEEEcccccEEEEccccccHHHHHHHHHHcHHccccccccEEccccccccccccccccEEccEEEEccccccEEEEEEcccEEEEEccccccHHHHHHHHHHHHcccccccEEEEEccEEccccccccccccccccEEEEEEccccccccccEEEccccccccccHHHHHHHHHccccccEEEEEEccEEccccccHHccccccccEEEEEc
Secondary Structure Prediction (SSPRO)
EEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccccHcccccccEEEEEEEccccEEEEEEEccccEEEEEEEcccccHHHHHHHHHHHccccHcHcEEEEcccccccccccHHHcccccccEEEEEEEcccccEEEEEcccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEccccEEEEEEccccEEEEEEcccccHHHHHHHHHHHccccHccEEEEEcccEccccccHHHcccccccEEEEEcccEEEEEEEccccEEEEEcccccEHHHHHHHHHHHHcccHHHEEEEEccEEcccccEcHHHccccccEEEEEEccccccEEEEEEEcccEEEEEEEccccHHHHHHcccHccEEEEEcccEccccccHHHcccccccEEEEEc
Coil and Loop (DISEMBL)
mkvkksepikNLKAMIHVKEGISEDICDLFfagdrleagrlvdygirnnstlHFLHQNLSEMKLFvkiptnqtatvveampyhtvQNIKTMIQVKegiqsdqftlvydgkllkedtatmtsmniksesiihlvfcPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYegkkledsktlafydmkdecllemfpssiqifvrtPIEEIVRLEVEVLIVVRDVKEIVANIIDLslgnqdlfyaGTKLEACKTLASygiknnyvldvlpspfQIFVKtwggktitldvqpyntvQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMvlapssriielplifidpsislsISISEVKEMAKVKFQAAVKELLVDQVALQDDRTLadygmdlsEKVVLVF
Flexible Loop (DISEMBL)
mkvkksepiknlKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMiyegkkledsktLAFYDMKDECLLEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQAAVKELLVDQVALQDDRTLADYGMDLSEKVVLVF
Low Complexity Region (SEG)
MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIvgsvvgvsaaDHIMIYEGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPieeivrlevevlivvrDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIElplifidpsislsisisEVKEMAKVKFQAAVKELLVDQVALQDDRTLADYGMDLSEKVVLVF
Disordered region (IsUnstruct)
***********LKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQAAVKELLVDQVALQDDRTLADYGMDLSEKVVL**
Disordered Region (DISOPRED)
MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQAAVKELLVDQVALQDDRTLADYGMDLSEKVVLVF
Disordered Region (DISEMBL)
MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQAAVKELLVDQVALQDDRTLADYGMDLSEKVVLVF
Disordered Region (DISPRO)
MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQAAVKELLVDQVALQDDRTLADYGMDLSEKVVLVF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQAAVKELLVDQVALQDDRTLADYGMDLSEKVVLVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	426	2.2.26 [Sep-21-2011]
P0CG68	533	Polyubiquitin-C OS=Sus sc	yes	no	0.995	0.795	0.380	9e-69
P0CH28	690	Polyubiquitin-C OS=Bos ta	yes	no	0.995	0.614	0.380	9e-69
P0CG61	761	Polyubiquitin-C OS=Pongo	N/A	no	0.995	0.557	0.380	1e-68
P0CG64	761	Polyubiquitin-C OS=Pan tr	yes	no	0.995	0.557	0.380	1e-68
P0CG48	685	Polyubiquitin-C OS=Homo s	yes	no	0.995	0.618	0.380	1e-68
P0CG66	609	Polyubiquitin-C OS=Gorill	N/A	no	0.995	0.696	0.380	1e-68
Q63429	810	Polyubiquitin-C OS=Rattus	yes	no	0.995	0.523	0.380	1e-68
P0CG69	763	Polyubiquitin OS=Drosophi	no	no	0.995	0.555	0.380	1e-68
P0CG50	734	Polyubiquitin-C OS=Mus mu	yes	no	0.995	0.577	0.380	1e-68
P62976	658	Polyubiquitin OS=Cricetul	no	no	0.995	0.644	0.380	1e-68

>sp|P0CG68|UBC_PIG Polyubiquitin-C OS=Sus scrofa GN=UBC PE=2 SV=1

 Score =  261 bits (666), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 91  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 151 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 208

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 209 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 268

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 269 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 328

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 329 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 388

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 389 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 448

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 449 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 509 GRTLSDYNIQKESTLHLVL 527

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.
Sus scrofa (taxid: 9823)

>sp|P0CH28|UBC_BOVIN Polyubiquitin-C OS=Bos taurus GN=UBC PE=1 SV=1

 Score =  261 bits (666), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 91  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 151 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 208

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 209 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 268

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 269 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 328

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 329 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 388

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 389 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 448

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 449 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 509 GRTLSDYNIQKESTLHLVL 527

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Bos taurus (taxid: 9913)

>sp|P0CG61|UBC_PONPY Polyubiquitin-C OS=Pongo pygmaeus GN=UBC PE=3 SV=1

 Score =  261 bits (666), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Pongo pygmaeus (taxid: 9600)

>sp|P0CG64|UBC_PANTR Polyubiquitin-C OS=Pan troglodytes GN=UBC PE=3 SV=1

 Score =  261 bits (666), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Pan troglodytes (taxid: 9598)

>sp|P0CG48|UBC_HUMAN Polyubiquitin-C OS=Homo sapiens GN=UBC PE=1 SV=3

 Score =  261 bits (666), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Homo sapiens (taxid: 9606)

>sp|P0CG66|UBC_GORGO Polyubiquitin-C OS=Gorilla gorilla gorilla GN=UBC PE=3 SV=1

 Score =  260 bits (665), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q63429|UBC_RAT Polyubiquitin-C OS=Rattus norvegicus GN=Ubc PE=1 SV=1

 Score =  260 bits (665), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Rattus norvegicus (taxid: 10116)

>sp|P0CG69|UBIQP_DROME Polyubiquitin OS=Drosophila melanogaster GN=Ubi-p63E PE=3 SV=1

 Score =  260 bits (665), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Drosophila melanogaster (taxid: 7227)

>sp|P0CG50|UBC_MOUSE Polyubiquitin-C OS=Mus musculus GN=Ubc PE=1 SV=2

 Score =  260 bits (665), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Mus musculus (taxid: 10090)

>sp|P62976|UBIQP_CRIGR Polyubiquitin OS=Cricetulus griseus PE=2 SV=2

 Score =  260 bits (664), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T +E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Cricetulus griseus (taxid: 10029)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
9837286	886	polyubiquitin C [Mus musculus]	0.995	0.478	0.382	9e-68
195337251	915	GM14032 [Drosophila sechellia] gi|194128	0.995	0.463	0.382	1e-67
9837284	734	polyubiquitin C [Mus musculus]	0.995	0.577	0.382	2e-67
260806905	600	hypothetical protein BRAFLDRAFT_113894 [	0.995	0.706	0.380	2e-67
67191208	685	polyubiquitin-C [Homo sapiens]	0.995	0.618	0.382	2e-67
444434919	533	ubiquitin C [Homo sapiens]	0.995	0.795	0.382	4e-67
391348265	913	PREDICTED: LOW QUALITY PROTEIN: polyubiq	0.995	0.464	0.380	5e-67
170034793	1065	conserved hypothetical protein [Culex qu	0.995	0.398	0.380	5e-67
510473	697	polyubiquitin [Artemia franciscana]	0.995	0.608	0.380	5e-67
347966903	1065	AGAP001971-PA [Anopheles gambiae str. PE	0.995	0.398	0.380	5e-67

>gi|9837286|gb|AAG00513.1|AF285162_1 polyubiquitin C [Mus musculus]

 Score =  263 bits (673), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 168/439 (38%), Positives = 247/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 167 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEGGRTLSDYNIQKESTLHLVLRLR 226

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 227 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 284

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 285 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 344

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 345 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 404

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +S   Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 405 NVKAKIQDKEGISPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 464

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 465 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 524

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 525 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 584

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 585 GRTLSDYNIQKESTLHLVL 603

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195337251|ref|XP_002035242.1| GM14032 [Drosophila sechellia] gi|194128335|gb|EDW50378.1| GM14032 [Drosophila sechellia]

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 168/439 (38%), Positives = 247/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 395 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 454

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 455 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 512

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ +NLEV+ S  I +VKA +    G+    
Sbjct: 513 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTINLEVEPSDTIENVKAKIQDKEGIPPDQ 572

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 573 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 632

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 633 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 692

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 693 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 752

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 753 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGISPDQQRLIFAGKQLED 812

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 813 GRTLSDYNIQKESTLHLVL 831

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|9837284|gb|AAG00512.1|AF285161_1 polyubiquitin C [Mus musculus]

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 168/439 (38%), Positives = 247/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +S   Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKEGISPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260806905|ref|XP_002598324.1| hypothetical protein BRAFLDRAFT_113894 [Branchiostoma floridae] gi|229283596|gb|EEN54336.1| hypothetical protein BRAFLDRAFT_113894 [Branchiostoma floridae]

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 247/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + L+F
Sbjct: 433 GRTLSDYNIQKESTLHLIF 451

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|67191208|ref|NP_066289.2| polyubiquitin-C [Homo sapiens]

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 168/439 (38%), Positives = 247/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 91  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI SDQ  L++ GK L ED  T+
Sbjct: 151 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQL-EDGRTL 208

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 209 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 268

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 269 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 328

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 329 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 388

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 389 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 448

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 449 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 509 GRTLSDYNIQKESTLHLVL 527

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444434919|dbj|BAM77034.1| ubiquitin C [Homo sapiens]

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 168/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  V +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKAITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|391348265|ref|XP_003748368.1| PREDICTED: LOW QUALITY PROTEIN: polyubiquitin-A-like [Metaseiulus occidentalis]

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 245/439 (55%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 471 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 530

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 531 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 588

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 589 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 648

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y ++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 649 QRLIFAGKQLEDGRTLSDYSIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEASDTIE 708

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 709 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 768

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 769 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 828

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 829 LVLRLRGGMQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGXPPDQQRLIFAGKQLED 888

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 889 GRTLSDYNIQKESTLHLVL 907

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034793|ref|XP_001845257.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876387|gb|EDS39770.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|510473|emb|CAA52416.1| polyubiquitin [Artemia franciscana]

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKQGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Source: Artemia franciscana

Species: Artemia franciscana

Genus: Artemia

Family: Artemiidae

Order: Anostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966903|ref|XP_550846.3| AGAP001971-PA [Anopheles gambiae str. PEST] gi|333469848|gb|EAL38503.3| AGAP001971-PA [Anopheles gambiae str. PEST]

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 246/439 (56%), Gaps = 15/439 (3%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAAD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+    
Sbjct: 133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPIEEIVRLEVEVLIVVR 236
             +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T   + + LEVE    + 
Sbjct: 193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query: 237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
           +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct: 253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query: 354 MVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLVDQVALQD 407
           +VL     +          +I+L +  S+  E  K K Q         + L+     L+D
Sbjct: 373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query: 408 DRTLADYGMDLSEKVVLVF 426
            RTL+DY +     + LV 
Sbjct: 433 GRTLSDYNIQKESTLHLVL 451

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
UNIPROTKB|F5H041	609	UBC "Polyubiquitin-C" [Homo sa	0.992	0.694	0.365	1.2e-58
RGD|621244	810	Ubc "ubiquitin C" [Rattus norv	0.992	0.522	0.363	4e-58
ZFIN|ZDB-GENE-050411-10	624	ubb "ubiquitin B" [Danio rerio	0.992	0.677	0.363	4e-58
FB|FBgn0003943	763	Ubi-p63E "Ubiquitin-63E" [Dros	0.992	0.554	0.363	4e-58
MGI|MGI:98889	734	Ubc "ubiquitin C" [Mus musculu	0.992	0.576	0.363	4e-58
RGD|620240	734	Rps27a "ribosomal protein S27a	0.992	0.576	0.363	4e-58
RGD|621562	734	Ubb "ubiquitin B" [Rattus norv	0.992	0.576	0.363	4e-58
RGD|68344	734	Uba52 "ubiquitin A-52 residue	0.992	0.576	0.363	4e-58
FB|FBgn0086558	534	Ubi-p5E "Ubiquitin-5E" [Drosop	0.992	0.792	0.363	4e-58
UNIPROTKB|P0CG48	685	UBC "Polyubiquitin-C" [Homo sa	0.992	0.617	0.363	4e-58

UNIPROTKB|F5H041 UBC "Polyubiquitin-C" [Homo sapiens (taxid:9606)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 160/438 (36%), Positives = 231/438 (52%)

Query:     1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
             ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct:    15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query:    60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
               M++FVK  T +T T+ E  P  T++N+K  IQ KEGI SDQ  L++ GK L ED  T+
Sbjct:    75 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQL-EDGRTL 132

Query:   120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXD 179
             +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA            
Sbjct:   133 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 192

Query:   180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPXXXXXXXXXXXXXXXX 236
               +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T                 
Sbjct:   193 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 252

Query:   237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
             +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct:   253 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 312

Query:   294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
              GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct:   313 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372

Query:   354 MVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQAAV------KELLVDQVALQD 407
             +VL     +                   +  E  K K Q         + L+     L+D
Sbjct:   373 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 432

Query:   408 DRTLADYGMDLSEKVVLV 425
              RTL+DY +     + LV
Sbjct:   433 GRTLSDYNIQKESTLHLV 450

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

RGD|621244 Ubc "ubiquitin C" [Rattus norvegicus (taxid:10116)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 159/438 (36%), Positives = 230/438 (52%)

Query:     1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
             ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct:   319 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 378

Query:    60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
               M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct:   379 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 436

Query:   120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXD 179
             +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA            
Sbjct:   437 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 496

Query:   180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPXXXXXXXXXXXXXXXX 236
               +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T                 
Sbjct:   497 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 556

Query:   237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
             +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct:   557 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 616

Query:   294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
              GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct:   617 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 676

Query:   354 MVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQAAV------KELLVDQVALQD 407
             +VL     +                   +  E  K K Q         + L+     L+D
Sbjct:   677 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 736

Query:   408 DRTLADYGMDLSEKVVLV 425
              RTL+DY +     + LV
Sbjct:   737 GRTLSDYNIQKESTLHLV 754

GO:0002020 "protease binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0010992 "ubiquitin homeostasis" evidence=ISO

ZFIN|ZDB-GENE-050411-10 ubb "ubiquitin B" [Danio rerio (taxid:7955)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 159/438 (36%), Positives = 230/438 (52%)

Query:     1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
             ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct:   181 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 240

Query:    60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
               M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct:   241 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 298

Query:   120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXD 179
             +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA            
Sbjct:   299 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 358

Query:   180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPXXXXXXXXXXXXXXXX 236
               +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T                 
Sbjct:   359 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 418

Query:   237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
             +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct:   419 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 478

Query:   294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
              GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct:   479 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 538

Query:   354 MVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQAAV------KELLVDQVALQD 407
             +VL     +                   +  E  K K Q         + L+     L+D
Sbjct:   539 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 598

Query:   408 DRTLADYGMDLSEKVVLV 425
              RTL+DY +     + LV
Sbjct:   599 GRTLSDYNIQKESTLHLV 616

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0003943 Ubi-p63E "Ubiquitin-63E" [Drosophila melanogaster (taxid:7227)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 159/438 (36%), Positives = 230/438 (52%)

Query:     1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
             ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct:   319 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 378

Query:    60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
               M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct:   379 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 436

Query:   120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXD 179
             +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA            
Sbjct:   437 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 496

Query:   180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPXXXXXXXXXXXXXXXX 236
               +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T                 
Sbjct:   497 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 556

Query:   237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
             +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct:   557 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 616

Query:   294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
              GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct:   617 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 676

Query:   354 MVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQAAV------KELLVDQVALQD 407
             +VL     +                   +  E  K K Q         + L+     L+D
Sbjct:   677 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 736

Query:   408 DRTLADYGMDLSEKVVLV 425
              RTL+DY +     + LV
Sbjct:   737 GRTLSDYNIQKESTLHLV 754

GO:0009987 "cellular process" evidence=IMP

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

MGI|MGI:98889 Ubc "ubiquitin C" [Mus musculus (taxid:10090)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 159/438 (36%), Positives = 230/438 (52%)

Query:     1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
             ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct:   243 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302

Query:    60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
               M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct:   303 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 360

Query:   120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXD 179
             +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA            
Sbjct:   361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420

Query:   180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPXXXXXXXXXXXXXXXX 236
               +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T                 
Sbjct:   421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 480

Query:   237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
             +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct:   481 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 540

Query:   294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
              GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct:   541 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 600

Query:   354 MVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQAAV------KELLVDQVALQD 407
             +VL     +                   +  E  K K Q         + L+     L+D
Sbjct:   601 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 660

Query:   408 DRTLADYGMDLSEKVVLV 425
              RTL+DY +     + LV
Sbjct:   661 GRTLSDYNIQKESTLHLV 678

GO:0002020 "protease binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IGI

RGD|620240 Rps27a "ribosomal protein S27a" [Rattus norvegicus (taxid:10116)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 159/438 (36%), Positives = 230/438 (52%)

Query:     1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
             ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct:   243 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302

Query:    60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
               M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct:   303 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 360

Query:   120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXD 179
             +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA            
Sbjct:   361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420

Query:   180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPXXXXXXXXXXXXXXXX 236
               +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T                 
Sbjct:   421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 480

Query:   237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
             +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct:   481 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 540

Query:   294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
              GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct:   541 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 600

Query:   354 MVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQAAV------KELLVDQVALQD 407
             +VL     +                   +  E  K K Q         + L+     L+D
Sbjct:   601 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 660

Query:   408 DRTLADYGMDLSEKVVLV 425
              RTL+DY +     + LV
Sbjct:   661 GRTLSDYNIQKESTLHLV 678

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0015935 "small ribosomal subunit" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

RGD|621562 Ubb "ubiquitin B" [Rattus norvegicus (taxid:10116)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 159/438 (36%), Positives = 230/438 (52%)

Query:     1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
             ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct:   243 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302

Query:    60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
               M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct:   303 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 360

Query:   120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXD 179
             +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA            
Sbjct:   361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420

Query:   180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPXXXXXXXXXXXXXXXX 236
               +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T                 
Sbjct:   421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 480

Query:   237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
             +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct:   481 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 540

Query:   294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
              GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct:   541 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 600

Query:   354 MVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQAAV------KELLVDQVALQD 407
             +VL     +                   +  E  K K Q         + L+     L+D
Sbjct:   601 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 660

Query:   408 DRTLADYGMDLSEKVVLV 425
              RTL+DY +     + LV
Sbjct:   661 GRTLSDYNIQKESTLHLV 678

GO:0007141 "male meiosis I" evidence=ISO

GO:0007144 "female meiosis I" evidence=ISO

GO:0008584 "male gonad development" evidence=ISO

GO:0008585 "female gonad development" evidence=ISO

GO:0010992 "ubiquitin homeostasis" evidence=ISO

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=ISO

GO:0060612 "adipose tissue development" evidence=ISO

GO:0060613 "fat pad development" evidence=ISO

GO:0072520 "seminiferous tubule development" evidence=ISO

GO:0097009 "energy homeostasis" evidence=ISO

RGD|68344 Uba52 "ubiquitin A-52 residue ribosomal protein fusion product 1" [Rattus norvegicus (taxid:10116)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 159/438 (36%), Positives = 230/438 (52%)

Query:     1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
             ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct:   243 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302

Query:    60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
               M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct:   303 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 360

Query:   120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXD 179
             +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA            
Sbjct:   361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420

Query:   180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPXXXXXXXXXXXXXXXX 236
               +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T                 
Sbjct:   421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 480

Query:   237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
             +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct:   481 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 540

Query:   294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
              GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct:   541 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 600

Query:   354 MVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQAAV------KELLVDQVALQD 407
             +VL     +                   +  E  K K Q         + L+     L+D
Sbjct:   601 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 660

Query:   408 DRTLADYGMDLSEKVVLV 425
              RTL+DY +     + LV
Sbjct:   661 GRTLSDYNIQKESTLHLV 678

GO:0005622 "intracellular" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

FB|FBgn0086558 Ubi-p5E "Ubiquitin-5E" [Drosophila melanogaster (taxid:7227)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 159/438 (36%), Positives = 230/438 (52%)

Query:     1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
             ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct:    91 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150

Query:    60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
               M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct:   151 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 208

Query:   120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXD 179
             +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA            
Sbjct:   209 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 268

Query:   180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPXXXXXXXXXXXXXXXX 236
               +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T                 
Sbjct:   269 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 328

Query:   237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
             +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct:   329 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 388

Query:   294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
              GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct:   389 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 448

Query:   354 MVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQAAV------KELLVDQVALQD 407
             +VL     +                   +  E  K K Q         + L+     L+D
Sbjct:   449 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 508

Query:   408 DRTLADYGMDLSEKVVLV 425
              RTL+DY +     + LV
Sbjct:   509 GRTLSDYNIQKESTLHLV 526

GO:0005704 "polytene chromosome band" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|P0CG48 UBC "Polyubiquitin-C" [Homo sapiens (taxid:9606)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 159/438 (36%), Positives = 230/438 (52%)

Query:     1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
             ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct:   243 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 302

Query:    60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
               M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct:   303 GGMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 360

Query:   120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXD 179
             +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA            
Sbjct:   361 SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 420

Query:   180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM---FPSSIQIFVRTPXXXXXXXXXXXXXXXX 236
               +I+ GK+LED +TL+ Y+++ E  L +       +QIFV+T                 
Sbjct:   421 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 480

Query:   237 DVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIFVKTW 293
             +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +   L    QIFVKT 
Sbjct:   481 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTL 540

Query:   294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
              GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct:   541 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 600

Query:   354 MVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQAAV------KELLVDQVALQD 407
             +VL     +                   +  E  K K Q         + L+     L+D
Sbjct:   601 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 660

Query:   408 DRTLADYGMDLSEKVVLV 425
              RTL+DY +     + LV
Sbjct:   661 GRTLSDYNIQKESTLHLV 678

GO:0007141 "male meiosis I" evidence=IEA

GO:0007144 "female meiosis I" evidence=IEA

GO:0008585 "female gonad development" evidence=IEA

GO:0010992 "ubiquitin homeostasis" evidence=IEA

GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron development" evidence=IEA

GO:0060613 "fat pad development" evidence=IEA

GO:0072520 "seminiferous tubule development" evidence=IEA

GO:0097009 "energy homeostasis" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0002020 "protease binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0007220 "Notch receptor processing" evidence=TAS

GO:0007249 "I-kappaB kinase/NF-kappaB cascade" evidence=TAS

GO:0007254 "JNK cascade" evidence=TAS

GO:0008063 "Toll signaling pathway" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010008 "endosome membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030666 "endocytic vesicle membrane" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0032480 "negative regulation of type I interferon production" evidence=TAS

GO:0033554 "cellular response to stress" evidence=TAS

GO:0034130 "toll-like receptor 1 signaling pathway" evidence=TAS

GO:0034134 "toll-like receptor 2 signaling pathway" evidence=TAS

GO:0034138 "toll-like receptor 3 signaling pathway" evidence=TAS

GO:0034142 "toll-like receptor 4 signaling pathway" evidence=TAS

GO:0035666 "TRIF-dependent toll-like receptor signaling pathway" evidence=TAS

GO:0035872 "nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" evidence=TAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0043123 "positive regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0046788 "egress of virus within host cell" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050852 "T cell receptor signaling pathway" evidence=TAS

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=TAS

GO:0051403 "stress-activated MAPK cascade" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0061418 "regulation of transcription from RNA polymerase II promoter in response to hypoxia" evidence=TAS

GO:0070423 "nucleotide-binding oligomerization domain containing signaling pathway" evidence=TAS

GO:0071456 "cellular response to hypoxia" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000080 "G1 phase of mitotic cell cycle" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0000187 "activation of MAPK activity" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002224 "toll-like receptor signaling pathway" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0002755 "MyD88-dependent toll-like receptor signaling pathway" evidence=TAS

GO:0002756 "MyD88-independent toll-like receptor signaling pathway" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CG72	UBI4P_SCHPO	No assigned EC number	0.4022	0.8309	0.9267	yes	no
P0CG75	UBI4P_KLULA	No assigned EC number	0.4022	0.8309	0.9291	yes	no
P0CG63	UBI4P_YEAST	No assigned EC number	0.4022	0.8309	0.9291	yes	no
Q8H159	UBQ10_ARATH	No assigned EC number	0.3826	0.9953	0.9277	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	426
cd01803	76	cd01803, Ubiquitin, Ubiquitin	1e-19
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-14
cd01803	76	cd01803, Ubiquitin, Ubiquitin	3e-13
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	3e-12
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	2e-11
smart00213	72	smart00213, UBQ, Ubiquitin homologues	1e-10
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	4e-09
smart00213	72	smart00213, UBQ, Ubiquitin homologues	8e-09
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	1e-08
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	2e-08
cd01803	76	cd01803, Ubiquitin, Ubiquitin	3e-08
cd01803	76	cd01803, Ubiquitin, Ubiquitin	3e-08
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	7e-08
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	9e-08
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	6e-07
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	8e-07
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	2e-06
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	4e-06
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	6e-06
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	8e-06
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	1e-05
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	8e-05
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	1e-04
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-04
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	3e-04
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	3e-04
cd01793	74	cd01793, Fubi, Fubi ubiquitin-like protein	4e-04
cd01807	74	cd01807, GDX_N, ubiquitin-like domain of GDX	4e-04
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	4e-04
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	5e-04
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	7e-04
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	8e-04
cd01803	76	cd01803, Ubiquitin, Ubiquitin	0.001
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	0.001
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	0.001
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	0.001
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	0.002
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	0.002
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	0.002
cd01798	70	cd01798, parkin_N, amino-terminal ubiquitin-like o	0.002
cd01808	71	cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1	0.002
smart00213	72	smart00213, UBQ, Ubiquitin homologues	0.003
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	0.004

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 82.6 bits (204), Expect = 1e-19
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 347 QKHSTLHMVL 356
           QK STLH+VL
Sbjct: 62  QKESTLHLVL 71

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 30/72 (41%), Positives = 46/72 (63%)

Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            ++ VKT  GKTITL+V+P +TV ++K K+ +    P   Q +++ GK L ++  LA Y 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 346 IQKHSTLHMVLA 357
           IQ  ST+H+VL 
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 64.5 bits (157), Expect = 3e-13
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T++ 
Sbjct: 1   MQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD 58

Query: 122 MNIKSESIIHLV 133
            NI+ ES +HLV
Sbjct: 59  YNIQKESTLHLV 70

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 32/69 (46%), Positives = 45/69 (65%)

Query: 291 KTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHS 350
           KT  GKTITL+V P +TV ++K K+ DK   P+  Q ++F+GK L ++  L+ Y IQ  S
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 351 TLHMVLAPS 359
           TLH+VL   
Sbjct: 61  TLHLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 30/68 (44%), Positives = 42/68 (61%)

Query: 289 FVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQK 348
            VKT  GKT  L+V P +TV ++K K+  K   P   Q +++AGK L ++  L+ Y IQ 
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 349 HSTLHMVL 356
            STLH+VL
Sbjct: 61  GSTLHLVL 68

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           ++L VK    +T T+ E  P  TV  +K  I    GI  +Q  L+Y GK+L++D  T+  
Sbjct: 1   IELTVKTLDGKTITL-EVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDR-TLAD 58

Query: 122 MNIKSESIIHLV 133
             I+  S IHLV
Sbjct: 59  YGIQDGSTIHLV 70

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QI +KT  GK  + + +P NTVQ VK+ L +K    +    ++++GK++ ++  L+ Y +
Sbjct: 2   QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKV 61

Query: 347 QKHSTLHMVL 356
              ST+HMVL
Sbjct: 62  VPGSTIHMVL 71

Length = 76

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 22/69 (31%), Positives = 39/69 (56%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           + + VK   G+ + LEVK S  + ++K  +  + G+      +IY+GK LED +TLA Y 
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 200 MKDECLLEM 208
           ++D   + +
Sbjct: 61  IQDGSTIHL 69

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 67  KIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKS 126
           K    +T   +E  P  TV  +K  I+ KEGI  DQ  L++ GK+L++DT T++   I+ 
Sbjct: 1   KTLDGKT-ITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDT-TLSEYGIQD 58

Query: 127 ESIIHLVF 134
            S +HLV 
Sbjct: 59  GSTLHLVL 66

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 24/71 (33%), Positives = 44/71 (61%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
            I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK++ ++   A Y +
Sbjct: 2   LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKL 61

Query: 347 QKHSTLHMVLA 357
           +  S LH+VLA
Sbjct: 62  EGGSVLHLVLA 72

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 26/69 (37%), Positives = 42/69 (60%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           + IFVK  TG+ + LEV+ S  I +VKA +    G+      +I+ GK+LED +TL+ Y+
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 200 MKDECLLEM 208
           ++ E  L +
Sbjct: 61  IQKESTLHL 69

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFL 55
          ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH +
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 19/64 (29%), Positives = 32/64 (50%)

Query: 145 KAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDEC 204
           K   G+ + LEV  S  + ++K  +    G+      +I+ GK LED  TL+ Y ++D  
Sbjct: 1   KTLDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGS 60

Query: 205 LLEM 208
            L +
Sbjct: 61  TLHL 64

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 65  FVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNI 124
            VK  T +T  + E  P  TV  +K  I  KEG+  +Q  L+Y GK+LK+D  T++   I
Sbjct: 1   TVKTLTGKTFEL-EVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDK-TLSDYGI 58

Query: 125 KSESIIHLV 133
           +  S +HLV
Sbjct: 59  QDGSTLHLV 67

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 46.4 bits (111), Expect = 6e-07
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVFAGKRLFENHVLARY 344
            +I +K   GK + + V+P  T+  +      K   P   Q  ++F G+RL  N  +A Y
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 345 NIQKHSTLHMVL 356
           +I+   T+ +V+
Sbjct: 61  DIEDGDTIDVVI 72

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 46.1 bits (110), Expect = 8e-07
 Identities = 23/66 (34%), Positives = 35/66 (53%)

Query: 143 FVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKD 202
            VK  TG+   LEV     + ++KA + +  GV      +IY GK L+D KTL+ Y ++D
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 203 ECLLEM 208
              L +
Sbjct: 61  GSTLHL 66

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M++ +K  T +  +     P +TVQ +K  +Q KEGI   Q  L+Y GK + +D   ++ 
Sbjct: 1   MQILIKTLTGKKQSF-NFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDL-KLSD 58

Query: 122 MNIKSESIIHLV 133
             +   S IH+V
Sbjct: 59  YKVVPGSTIHMV 70

Length = 76

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++V  S+ +  LK  I  KEGI  D   L F+G  LE    L +YGI++ STLH
Sbjct: 10 LEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDDTTLSEYGIQDGSTLH 63

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 21/69 (30%), Positives = 33/69 (47%)

Query: 216 FVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKN 275
            V+T   +   LEV     V ++K  +A    +    Q L YAG  L+  KTL+ YGI++
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQD 60

Query: 276 NYVLDVLPS 284
              L ++  
Sbjct: 61  GSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 25/68 (36%), Positives = 33/68 (48%)

Query: 289 FVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQK 348
            VK   GKT+ L V    TV D+K KL  KL  P   Q ++  GK L ++  L  Y +Q 
Sbjct: 1   KVKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQD 60

Query: 349 HSTLHMVL 356
              L +V 
Sbjct: 61  GDELVLVP 68

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARY 344
             ++F++T  G    L V P+ TV  VK K+      P+  Q +++    L + + L  Y
Sbjct: 27  TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDY 86

Query: 345 NIQKHSTLHMVLA 357
           NI +  TL +VLA
Sbjct: 87  NISEGCTLKLVLA 99

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 20/67 (29%), Positives = 37/67 (55%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           I+I V+T   +     VE  I V D+KE +A  + + +  Q L Y+G  L+  +TL+ Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 273 IKNNYVL 279
           +++ + +
Sbjct: 61  VEDGHTI 67

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 28/54 (51%)

Query: 154 LEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLE 207
           LEV     + D+KA V  + G+   D +++  G  LED  TL    +++ C LE
Sbjct: 13  LEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLE 66

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 22/70 (31%), Positives = 39/70 (55%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           I++ V+T   + + LEV+    V ++KE +A +  +    Q L Y G  LE  +TLA YG
Sbjct: 1   IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 273 IKNNYVLDVL 282
           I++   + ++
Sbjct: 61  IQDGSTIHLV 70

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 2  KVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAG-RLVDYGIRNNSTLHFL 55
          +V   + +  LKA I  KEG+  +   L +AG  L+    L DYGI++ STLH +
Sbjct: 13 EVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV 67

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 16/70 (22%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHI-MIYEGKKLEDSKTLAFY 198
           + I +K   G+ V ++VK +  +  +        G+ A   + +I++G++L+ + T+A Y
Sbjct: 1   IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPNDTVADY 60

Query: 199 DMKDECLLEM 208
           D++D   +++
Sbjct: 61  DIEDGDTIDV 70

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|176388 cd01793, Fubi, Fubi ubiquitin-like protein

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           Q+FV+     T TL+V    TV D+K  +       +  Q ++ AG  L ++  L +  +
Sbjct: 2   QLFVR--AQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGV 59

Query: 347 QKHSTLHMV 355
           ++  TL + 
Sbjct: 60  EELCTLEVA 68

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8. Length = 74

>gnl|CDD|176402 cd01807, GDX_N, ubiquitin-like domain of GDX

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 20/72 (27%), Positives = 38/72 (52%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
            + VK   G+  +L V    +V  +K  + + L  P   Q ++F GK L ++  L+ Y+I
Sbjct: 2   FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSI 61

Query: 347 QKHSTLHMVLAP 358
             ++ L++V+ P
Sbjct: 62  GPNAKLNLVVRP 73

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown. Length = 74

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 17/65 (26%), Positives = 33/65 (50%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           ++V+  TG    +EV     I+ +K +V    GV      +I+ GK+L ++ T+   D+ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 202 DECLL 206
            + +L
Sbjct: 61  QQSIL 65

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 15/69 (21%), Positives = 30/69 (43%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           + I +K  TG+  +   +    ++ VK  +    G+      +IY GK++ D   L+ Y 
Sbjct: 1   MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYK 60

Query: 200 MKDECLLEM 208
           +     + M
Sbjct: 61  VVPGSTIHM 69

Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 77  VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133
           ++  P   V+ IK  ++ KEGI   Q  L+Y GK + +D  T     ++  S++HLV
Sbjct: 15  IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDK-TAADYKLEGGSVLHLV 70

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 65  FVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNI 124
            VK+   +T   +      TV ++K  +  K G+  +Q  L+ +GK+L  D+ T+    +
Sbjct: 1   KVKLNDGKT-VELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILP-DSLTLEDYGL 58

Query: 125 KSESIIHLV 133
           +    + LV
Sbjct: 59  QDGDELVLV 67

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           +QIFV+T   + + LEVE    + +VK  + +   +    Q L +AG +LE  +TL+ Y 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 273 IKNNYVL 279
           I+    L
Sbjct: 61  IQKESTL 67

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 64  LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMN 123
           ++V+  T  T   VE  P   ++ +K ++  ++G+  DQ  +++ GK L+  T T+   +
Sbjct: 1   VYVRTNTGHT-FPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTT-TIQECD 58

Query: 124 IKSESIIHLV 133
           +  +SI+H V
Sbjct: 59  LGQQSILHAV 68

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVG--VSAADHIMIYEGKKLEDSKTLAF 197
           + I  K    +   +EV     + ++K  +    G         +IY GK L+D  TL  
Sbjct: 1   MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEE 60

Query: 198 YDMKDE 203
           Y + ++
Sbjct: 61  YKIDEK 66

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK--LQTPLHLQSIVFAGKRLFENHVLARY 344
           +I  KT   +T  ++V P +TV ++K K+ ++     P   Q ++++GK L ++  L  Y
Sbjct: 2   KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEY 61

Query: 345 NI 346
            I
Sbjct: 62  KI 63

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGI-QSDQFTLVYDGKLLKEDTATMT 120
           +++ +K    +   + +  P  T+  +    + K GI    Q  L++DG+ L  +  T+ 
Sbjct: 1   IRIKLKGKDGKEVFI-KVKPTTTLSKLINAYRKKRGIPADQQVRLIFDGERLDPN-DTVA 58

Query: 121 SMNIKSESIIHLV 133
             +I+    I +V
Sbjct: 59  DYDIEDGDTIDVV 71

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 21/68 (30%), Positives = 41/68 (60%)

Query: 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ 347
           I VKT   +T T  V+   TV D+K K+ +++  P+  Q ++++G+ L ++  L+ Y ++
Sbjct: 3   IKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVE 62

Query: 348 KHSTLHMV 355
              T+H+V
Sbjct: 63  DGHTIHLV 70

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 17/69 (24%), Positives = 33/69 (47%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           + I VK    +     V+    + D+K  +   VG+      +IY G+ L+D +TL+ Y 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYK 60

Query: 200 MKDECLLEM 208
           ++D   + +
Sbjct: 61  VEDGHTIHL 69

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176393 cd01798, parkin_N, amino-terminal ubiquitin-like of parkin protein

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ 347
           ++V+T  G T  ++V P   ++ +K  +  +   P     ++FAGK L     +   ++ 
Sbjct: 1   VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLG 60

Query: 348 KHSTLHMV 355
           + S LH V
Sbjct: 61  QQSILHAV 68

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain. Length = 70

>gnl|CDD|176403 cd01808, hPLIC_N, Ubiquitin-like domain of hPLIC-1 and hPLIC2

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           +K+ VK P ++    +      +V++ K  +  K     +Q  L++ GK+LK DT T+T 
Sbjct: 1   IKVTVKTPKDKEEIEIAEDA--SVKDFKEAVSKKFKANQEQLVLIFAGKILK-DTDTLTQ 57

Query: 122 MNIKSESIIHLV 133
            NIK    +HLV
Sbjct: 58  HNIKDGLTVHLV 69

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein. Length = 71

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 2  KVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          +VK S+ +  LK  I    GI  +   L + G  LE  R L DYGI++ ST+H
Sbjct: 16 EVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDRTLADYGIQDGSTIH 68

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           +++ VK   +QT T        TV ++K  I  + GI  +Q  L+Y G++LK+D  T++ 
Sbjct: 1   IEIKVKTLDSQTHTFTVEEEI-TVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDE-TLSE 58

Query: 122 MNIKSESIIHLV 133
             ++    IHLV
Sbjct: 59  YKVEDGHTIHLV 70

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	426
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.86
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.85
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.82
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.8
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.78
PTZ00044	76	ubiquitin; Provisional	99.77
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.77
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.76
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.75
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.74
PTZ00044	76	ubiquitin; Provisional	99.74
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.73
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.73
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.73
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.73
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.72
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.71
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.71
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.7
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.7
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.69
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.69
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.69
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.68
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.67
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.67
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.67
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.67
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.67
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.66
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.66
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.65
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.64
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.64
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.63
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.63
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.63
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.62
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.61
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.61
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.6
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.59
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.59
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.58
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.57
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.56
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.54
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.53
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.51
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.49
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.48
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.45
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.4
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.4
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.4
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.4
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.37
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.35
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.34
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.33
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.31
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.29
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.27
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.23
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.2
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.14
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.14
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.09
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	99.07
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	99.05
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	99.05
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	99.05
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.03
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	98.93
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.93
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.88
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.84
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.78
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	98.73
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.62
PLN02560	308	enoyl-CoA reductase	98.6
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.6
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.59
PLN02560	308	enoyl-CoA reductase	98.53
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.52
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.51
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.45
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.37
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.28
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.24
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.21
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.18
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.15
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	98.07
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	98.05
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.03
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	98.02
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	97.91
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.9
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.56
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	97.5
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	97.35
PF13019	162	Telomere_Sde2: Telomere stability and silencing	97.31
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	97.29
KOG4495	110	consensus RNA polymerase II transcription elongati	97.14
KOG4495	110	consensus RNA polymerase II transcription elongati	97.07
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	97.05
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	96.83
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	96.78
PF13019	162	Telomere_Sde2: Telomere stability and silencing	96.72
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	96.65
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	96.53
COG5417	81	Uncharacterized small protein [Function unknown]	96.43
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	96.34
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	96.05
KOG0013	231	consensus Uncharacterized conserved protein [Funct	95.88
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	95.82
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	95.77
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	95.65
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	95.62
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	95.57
COG5417	81	Uncharacterized small protein [Function unknown]	95.47
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	95.39
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	95.34
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	95.3
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	94.32
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	94.13
KOG0013	231	consensus Uncharacterized conserved protein [Funct	94.07
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	93.97
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	93.97
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	93.62
KOG1639	297	consensus Steroid reductase required for elongatio	93.59
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	93.57
PRK06437	67	hypothetical protein; Provisional	93.36
KOG1639	297	consensus Steroid reductase required for elongatio	93.26
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	93.15
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	92.99
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	92.84
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	92.83
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	92.58
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	92.45
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	92.44
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	92.07
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	91.67
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	91.63
PRK06488	65	sulfur carrier protein ThiS; Validated	91.51
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	91.32
PF12436	249	USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-sp	90.95
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	90.85
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	90.53
PRK08364	70	sulfur carrier protein ThiS; Provisional	90.38
smart00455	70	RBD Raf-like Ras-binding domain.	90.0
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	89.6
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	88.98
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	88.71
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	88.18
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	88.13
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	87.37
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	86.55
KOG4261	1003	consensus Talin [Cytoskeleton]	85.43
PRK06437	67	hypothetical protein; Provisional	85.39
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	85.36
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	85.33
PRK05863	65	sulfur carrier protein ThiS; Provisional	84.46
smart00295	207	B41 Band 4.1 homologues. Also known as ezrin/radix	84.31
smart00455	70	RBD Raf-like Ras-binding domain.	84.09
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	83.9
PRK08053	66	sulfur carrier protein ThiS; Provisional	83.76
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	83.67
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	83.33
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	83.17
KOG4583	391	consensus Membrane-associated ER protein involved	83.16
PRK05659	66	sulfur carrier protein ThiS; Validated	82.76
PRK08364	70	sulfur carrier protein ThiS; Provisional	82.72
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	82.46
PRK07440	70	hypothetical protein; Provisional	82.43
KOG0012	380	consensus DNA damage inducible protein [Replicatio	82.23
PF14453	57	ThiS-like: ThiS-like ubiquitin	82.09
KOG4598	1203	consensus Putative ubiquitin-specific protease [Po	81.58
PRK06083	84	sulfur carrier protein ThiS; Provisional	81.51
PF12754	309	Blt1: Cell-cycle control medial ring component; In	80.29
PF02196	71	RBD: Raf-like Ras-binding domain; InterPro: IPR003	80.17

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.86  E-value=1.6e-21  Score=158.25  Aligned_cols=97  Identities=23%  Similarity=0.321  Sum_probs=94.2

Q ss_pred             cccCCCCCCCeEEEEEecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccc
Q 036691           41 LVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMT  120 (426)
Q Consensus        41 l~~y~i~~~~~l~l~~~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~  120 (426)
                      -..+++.+.+++|+++++++.|+|+||+..|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~-leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D-~~tL~   84 (103)
T cd01802           7 PPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFE-LRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELED-EYCLN   84 (103)
T ss_pred             CCccccCCcceeEEeeccCCCEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCC-CCcHH
Confidence            67889999999999999999999999999999999 99999999999999999999999999999999999999 99999


Q ss_pred             ccccccCcEEEEEeeccce
Q 036691          121 SMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus       121 ~y~I~~~s~i~l~~~~~~g  139 (426)
                      +|+|+++++||++++++||
T Consensus        85 dy~I~~~stL~l~~~l~GG  103 (103)
T cd01802          85 DYNISEGCTLKLVLAMRGG  103 (103)
T ss_pred             HcCCCCCCEEEEEEecCCC
Confidence            9999999999999998876

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=5.8e-23  Score=159.85  Aligned_cols=101  Identities=45%  Similarity=0.624  Sum_probs=93.8

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcccC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIEL  365 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~~~  365 (426)
                      |++++++++|+|++++++|++||.++|++|+++.|+|+++|+|+|+|++|+|++||++|||+..||||+++|++||..  
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~i--   78 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGII--   78 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCCC--
Confidence            678999999999999999999999999999999999999999999999999999999999999999999999999955  


Q ss_pred             CceeeccccCCCCCHHHHHHHHHHh----cCc
Q 036691          366 PLIFIDPSISLSISISEVKEMAKVK----FQA  393 (426)
Q Consensus       366 ~~~~~~~~~~~~~~v~~~k~~i~~~----~~~  393 (426)
                           +++....+..++..+.||++    ++|
T Consensus        79 -----~~~~aalAmK~~~D~lICRkCYAR~g~  105 (128)
T KOG0003|consen   79 -----EPSLAALAMKYNCDKLICRKCYARLGP  105 (128)
T ss_pred             -----ChhHHHHHHHhccchHHHHHHHHhcCc
Confidence                 56666677788888999998    555

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.82  E-value=1.1e-19  Score=147.48  Aligned_cols=92  Identities=26%  Similarity=0.386  Sum_probs=85.3

Q ss_pred             ccCCCCCccccc---CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCC
Q 036691          270 SYGIKNNYVLDV---LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI  346 (426)
Q Consensus       270 ~y~I~~~~~l~l---~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I  346 (426)
                      .+++-+-+++++   ++..|+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I   88 (103)
T cd01802           9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI   88 (103)
T ss_pred             ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence            345556666666   67789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEeecCCC
Q 036691          347 QKHSTLHMVLAPSSR  361 (426)
Q Consensus       347 ~~~~ti~l~~~~~gg  361 (426)
                      +++++||++++++||
T Consensus        89 ~~~stL~l~~~l~GG  103 (103)
T cd01802          89 SEGCTLKLVLAMRGG  103 (103)
T ss_pred             CCCCEEEEEEecCCC
Confidence            999999999999987

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.80  E-value=1.8e-19  Score=138.17  Aligned_cols=74  Identities=24%  Similarity=0.296  Sum_probs=71.7

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |+|+||+.  ++++++|+|++||+++|++|++++|+|+++|+|+|+|++|+|++||++|||++++|||+++|++||
T Consensus         1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793           1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            78999984  899999999999999999999999999999999999999999999999999999999999999987

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.78  E-value=8.1e-19  Score=134.51  Aligned_cols=73  Identities=27%  Similarity=0.472  Sum_probs=71.4

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      |+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+++|++|||+++++||+++|.
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999875

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>PTZ00044 ubiquitin; Provisional

Probab=99.77  E-value=1.3e-18  Score=134.13  Aligned_cols=76  Identities=33%  Similarity=0.524  Sum_probs=74.6

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |+|+|++.+|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++||++++++||
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg   76 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999886

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.77  E-value=1.1e-18  Score=133.75  Aligned_cols=74  Identities=26%  Similarity=0.310  Sum_probs=70.9

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      |+|+||+  +++++ ++|++++||+++|++|++++|+|+++|+|+|+|++|+| +.+|++|+|++++++|+++|++||
T Consensus         1 mqi~vk~--~~~~~-l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D-~~tL~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793           1 MQLFVRA--QNTHT-LEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLED-DATLGQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             CEEEEEC--CCEEE-EEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCC-CCCHHHcCCCCCCEEEEEEecCCC
Confidence            7899997  47888 99999999999999999999999999999999999999 999999999999999999999886

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.76  E-value=1.9e-18  Score=132.38  Aligned_cols=74  Identities=22%  Similarity=0.315  Sum_probs=72.3

Q ss_pred             EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |+|+++.|+++++++++++||++||++|+++.|+|+++|+|+|+|+.|+|++||++|||+++++|+|+++++||
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg   74 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG   74 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999886

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.75  E-value=3e-18  Score=131.33  Aligned_cols=73  Identities=21%  Similarity=0.388  Sum_probs=70.9

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      |+|+||+.+|++++ ++|++++||++||++|++++|+|+++|+|+|+|++|+| +.+|++|+|++++++|+++++
T Consensus         1 m~i~vk~~~G~~~~-l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d-~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECS-LQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALAD-DKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCC-CCCHHHCCCCCCCEEEEEEcC
Confidence            78999999999999 99999999999999999999999999999999999999 999999999999999998874

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=9.8e-19  Score=146.97  Aligned_cols=78  Identities=49%  Similarity=0.678  Sum_probs=76.5

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      |+|||+++.|+++++++.+++||.++|++|++++|||+++|||+|+|++|+|++||+||+|+..+|||++++++||..
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~k   78 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAK   78 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCcc
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999999966

>PTZ00044 ubiquitin; Provisional

Probab=99.74  E-value=7.2e-18  Score=130.01  Aligned_cols=76  Identities=29%  Similarity=0.478  Sum_probs=73.8

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      |+|+||+.+|++++ +++++++||+++|++|+++.|+|+++|+|+|+|+.|+| +.+|++|++++++++|+.++++||
T Consensus         1 m~i~vk~~~G~~~~-l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d-~~~l~~~~i~~~~~i~l~~~~~gg   76 (76)
T PTZ00044          1 MQILIKTLTGKKQS-FNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSD-DLKLSDYKVVPGSTIHMVLQLRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccC-CCcHHHcCCCCCCEEEEEEEccCC
Confidence            79999999999999 99999999999999999999999999999999999998 999999999999999999998875

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.73  E-value=1.1e-17  Score=129.17  Aligned_cols=74  Identities=22%  Similarity=0.418  Sum_probs=70.7

Q ss_pred             cEEEEEecCCcE-EEEE-EcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          286 FQIFVKTWGGKT-ITLD-VQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       286 m~i~v~~~~g~~-~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      |+|+|++.+|++ ++++ +.+++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||+++++|++++|+.
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            899999999997 6895 8999999999999999999999999999999999999999999999999999999864

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=2.9e-19  Score=139.28  Aligned_cols=76  Identities=42%  Similarity=0.604  Sum_probs=74.5

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      |++|+++++|+|++ ++|+|++||..+|++|++++|+|+++|+|+|+|++|+| +.|+++|||+..||||+++|++||
T Consensus         1 ~~~~~~~~~GKT~~-le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED-~~Tla~Y~i~~~~Tl~~~~rL~GG   76 (128)
T KOG0003|consen    1 MQIFVKTLTGKTIT-LEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRLRGG   76 (128)
T ss_pred             CcEEEEEeeCceEE-EEecccchHHHHHHHhccccCCCHHHHHHHhccccccc-CCcccccCccchhhhhhhHHHhcC
Confidence            68899999999999 99999999999999999999999999999999999999 999999999999999999999998

>cd01803 Ubiquitin Ubiquitin

Probab=99.73  E-value=1.8e-17  Score=127.69  Aligned_cols=76  Identities=51%  Similarity=0.742  Sum_probs=74.6

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |+|+|++.+|+++.+++++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++||+++|++||++++++||
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999987

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.73  E-value=2.3e-17  Score=127.11  Aligned_cols=76  Identities=32%  Similarity=0.538  Sum_probs=74.4

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |+|+|++.+|+++.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.||++|+|++|++||++++.+||
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg   76 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999887

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.72  E-value=1.2e-17  Score=127.92  Aligned_cols=74  Identities=18%  Similarity=0.341  Sum_probs=71.6

Q ss_pred             EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      |+||++.|++++ +++++++||+++|++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|++++++++.++++||
T Consensus         1 i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D-~~tL~~~~i~~~~tl~l~~~l~gg   74 (74)
T cd01810           1 ILVRNDKGRSSI-YEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMED-EHPLGEYGLKPGCTVFMNLRLRGG   74 (74)
T ss_pred             CEEECCCCCEEE-EEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCC-CCCHHHcCCCCCCEEEEEEEccCC
Confidence            689999999999 99999999999999999999999999999999999999 999999999999999999998875

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.71  E-value=2.7e-17  Score=126.90  Aligned_cols=74  Identities=22%  Similarity=0.310  Sum_probs=70.1

Q ss_pred             eeEEEEcCCCce-eEEEE-EcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           62 MKLFVKIPTNQT-ATVVE-AMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        62 m~i~Vk~~~g~~-~~~~~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      |+|+||+.+|++ ++ ++ +++++||.++|++|++++|+|+++|+|+|+|+.|+| +.+|++|||+++++|++.+|+.
T Consensus         1 M~I~vk~~~G~~~~~-l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D-~~tL~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797           1 MWIQVRTMDGKETRT-VDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMED-GHTLFDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CEEEEEcCCCCEEEE-eeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCC-CCCHHHcCCCCCCEEEEEEecC
Confidence            899999999997 57 85 899999999999999999999999999999999999 9999999999999999988864

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.71  E-value=5e-17  Score=125.68  Aligned_cols=77  Identities=21%  Similarity=0.355  Sum_probs=74.3

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      +|+|+|++..|+.++++++++.||++||++|+++.|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+..+.+|.
T Consensus         1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~   77 (78)
T cd01804           1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL   77 (78)
T ss_pred             CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence            589999999999999999999999999999999999999999999999999999 99999999999999999998873

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.70  E-value=4.4e-17  Score=123.49  Aligned_cols=70  Identities=24%  Similarity=0.452  Sum_probs=67.9

Q ss_pred             EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      |+|++++|+++++++++++||+++|++|++++|+|+++|+|+|+|++|+|+.+|++|||+++++||++.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999865

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=7.2e-18  Score=141.75  Aligned_cols=78  Identities=40%  Similarity=0.558  Sum_probs=75.7

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS  141 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~  141 (426)
                      |+|||+++.|+++. +++.+++||..+|++|++++|||+++|||+|+|++|+| +++|+||+|+..+|||++++++||..
T Consensus         1 m~ifVk~l~~kti~-~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLed-grtlSDY~Iqkestl~l~l~l~Gg~k   78 (156)
T KOG0004|consen    1 MQIFVKTLTGKTIT-LEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGGAK   78 (156)
T ss_pred             Cccchhhcccccee-eeecccccHHHHHHhhhcccCCCchhhhhhhhhccccc-CCccccccccccceEEEEEEecCCcc
Confidence            78999999999999 99999999999999999999999999999999999999 99999999999999999999999853

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.69  E-value=7.8e-17  Score=122.47  Aligned_cols=72  Identities=15%  Similarity=0.166  Sum_probs=69.2

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      .|.|+|++..|+.+.++++|++||++||++|+++.|+|+++|||+|+|+.|+|+.||++|||++|++|||..
T Consensus         1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence            378999999999999999999999999999999999999999999999999999999999999999999963

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01803 Ubiquitin Ubiquitin

Probab=99.69  E-value=8.5e-17  Score=123.92  Aligned_cols=76  Identities=42%  Similarity=0.611  Sum_probs=73.9

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      |+|+||+.+|+++. +++++++||++||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+++++++||+.++++||
T Consensus         1 m~i~v~~~~g~~~~-~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d-~~~L~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803           1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             CEEEEEcCCCCEEE-EEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCC-CCcHHHcCCCCCCEEEEEEEccCC
Confidence            78999999999999 99999999999999999999999999999999999999 999999999999999999998876

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.69  E-value=1.1e-16  Score=123.34  Aligned_cols=76  Identities=29%  Similarity=0.465  Sum_probs=73.6

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      |+|+||+.+|+++. ++++++.||.+||++|+++.|+|++.|+|+|+|+.|+| +.+|++|++++|++||++++.+||
T Consensus         1 m~i~v~~~~g~~~~-~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d-~~tl~~~~i~~g~~i~l~~~~~gg   76 (76)
T cd01806           1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-DKTAADYKLEGGSVLHLVLALRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccC-CCCHHHcCCCCCCEEEEEEEccCC
Confidence            78999999999999 99999999999999999999999999999999999999 999999999999999999998876

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.68  E-value=9.7e-17  Score=121.14  Aligned_cols=68  Identities=26%  Similarity=0.300  Sum_probs=66.0

Q ss_pred             EEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691          289 FVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       289 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      .|+..+|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++||+++
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            57889999999999999999999999999999999999999999999999999999999999999986

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=4.3e-17  Score=113.30  Aligned_cols=70  Identities=34%  Similarity=0.577  Sum_probs=68.1

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~  355 (426)
                      |.|.|++++|+.+.++++|+|+|+.+|++++++.||||.+|||+|+|+++.|+.|-.+|++..||.+|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            6789999999999999999999999999999999999999999999999999999999999999999984

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=4.4e-17  Score=113.26  Aligned_cols=70  Identities=33%  Similarity=0.508  Sum_probs=67.8

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      |.|.||+++|+.+. ++++|+++|..+|++|++++|+||.+|||+|+|+++.| +.|-++|++.-||++|++
T Consensus         1 m~iKvktLt~KeIe-idIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~D-D~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMND-DKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEE-EeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccc-cccHHHhhhccceeEeeC
Confidence            67899999999999 99999999999999999999999999999999999999 999999999999999984

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.67  E-value=1.7e-16  Score=120.68  Aligned_cols=71  Identities=14%  Similarity=0.254  Sum_probs=68.3

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      .|.|+|++..|+.+. ++++|++||++||++|+++.|+|+++|||+|+|+.|+| +.+|++|||++|++|||.
T Consensus         1 ~~~i~vkt~~Gk~~~-~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D-~~tL~~ygi~~~stv~l~   71 (73)
T cd01791           1 MIEVVCNDRLGKKVR-VKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKD-HISLGDYEIHDGMNLELY   71 (73)
T ss_pred             CEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCC-CCCHHHcCCCCCCEEEEE
Confidence            378999999999999 99999999999999999999999999999999999999 999999999999999984

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.67  E-value=3.8e-16  Score=120.66  Aligned_cols=73  Identities=25%  Similarity=0.452  Sum_probs=70.7

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCC--CCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQT--PLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      |+|+|++++|+++++++++++||++||++|++++|+  |+++|+|+|+|+.|+|+.+|++|||++|++|+++++.
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~   75 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK   75 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence            789999999999999999999999999999999999  9999999999999999999999999999999998764

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.67  E-value=1.9e-16  Score=122.43  Aligned_cols=77  Identities=18%  Similarity=0.230  Sum_probs=73.4

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecccee
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEIL  140 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~  140 (426)
                      .|+|+||+..|+.+. +++++++||++||++|+++.|+|+++|+|+|+|+.|+| + +|++|||++|++|+++..+++|.
T Consensus         1 ~m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d-~-~L~~~gi~~~~~i~l~~~~~~~~   77 (78)
T cd01804           1 PMNLNIHSTTGTRFD-LSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSS-G-KLQDLGLGDGSKLTLVPTVEAGL   77 (78)
T ss_pred             CeEEEEEECCCCEEE-EEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCC-C-cHHHcCCCCCCEEEEEeeccccC
Confidence            489999999999999 99999999999999999999999999999999999999 7 99999999999999999888764

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.66  E-value=1.9e-16  Score=120.04  Aligned_cols=70  Identities=27%  Similarity=0.531  Sum_probs=67.3

Q ss_pred             EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      |+||+..|++++ +++++++||+++|++|++++|+|+++|+|+|+|++|+| +.+|++|+|+++|++|++.|
T Consensus         1 i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d-~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFP-VEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRN-TTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEE-EEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCC-CCcHHHcCCCCCCEEEEEeC
Confidence            689999999999 99999999999999999999999999999999999999 99999999999999999754

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.66  E-value=4.9e-16  Score=118.36  Aligned_cols=72  Identities=29%  Similarity=0.493  Sum_probs=69.9

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      |+|+|++++|+++++++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++||++.|
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999864

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.65  E-value=2.8e-16  Score=118.64  Aligned_cols=68  Identities=19%  Similarity=0.394  Sum_probs=65.6

Q ss_pred             EEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691           65 FVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF  134 (426)
Q Consensus        65 ~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~  134 (426)
                      .||.++|++++ +++++++||+++|++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||+.+
T Consensus         2 ~vk~~~G~~~~-l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D-~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVK-LSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTD-KTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEE-EEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCC-CCCHHHcCCCCCCEEEEEe
Confidence            57899999999 99999999999999999999999999999999999999 9999999999999999865

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.64  E-value=5.8e-16  Score=119.21  Aligned_cols=71  Identities=21%  Similarity=0.352  Sum_probs=68.1

Q ss_pred             cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          293 WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       293 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      ++|+++++++++++||++||++|+..+|+|+++|+|+|+|+.|+|++||++|+|++|++||++++++||..
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~~   75 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGRK   75 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCcC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999853

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.64  E-value=8.4e-16  Score=116.77  Aligned_cols=71  Identities=27%  Similarity=0.379  Sum_probs=67.6

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      |.|+|++.+|+ .+++++++.||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|||++|
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            46899999997 589999999999999999999999999999999999999999999999999999999875

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.63  E-value=9.1e-16  Score=119.33  Aligned_cols=73  Identities=21%  Similarity=0.296  Sum_probs=70.7

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEE--EEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI--VFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L--~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      +|+|+|++..|+++++++++++||++||++|+++.|+|+++|+|  +|+|+.|+|+.+|++|||++|++|+++++
T Consensus         2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~   76 (80)
T cd01792           2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ   76 (80)
T ss_pred             ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence            38899999999999999999999999999999999999999999  89999999999999999999999999987

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.63  E-value=1.4e-15  Score=114.93  Aligned_cols=69  Identities=39%  Similarity=0.664  Sum_probs=66.3

Q ss_pred             EecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          291 KTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       291 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      |+.+|+++++++++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.||++|||++|++|+|+.+.|
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~   69 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR   69 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence            578999999999999999999999999999999999999999999999999999999999999998764

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.63  E-value=1.3e-15  Score=117.62  Aligned_cols=73  Identities=29%  Similarity=0.472  Sum_probs=69.9

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCC--CCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGI--QSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gi--p~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      |+|+||+.+|+++. +++++++||.+||++|++++|+  |+++|+|+|+|+.|+| +.+|++|+|++|++|++.++.
T Consensus         1 m~i~vk~~~g~~~~-l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d-~~~L~~~~i~~~~~i~~~~~~   75 (77)
T cd01805           1 MKITFKTLKQQTFP-IEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKD-DTTLEEYKIDEKDFVVVMVSK   75 (77)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccC-CCCHHHcCCCCCCEEEEEEec
Confidence            79999999999999 9999999999999999999999  9999999999999999 899999999999999987653

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.62  E-value=1.4e-15  Score=115.81  Aligned_cols=72  Identities=31%  Similarity=0.421  Sum_probs=69.2

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      |+|+||+++|++++ +++++++||.+||++|++..|+|++.|+|+|+|+.|+| +.+|++||+++|+++|++.|
T Consensus         1 i~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d-~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHT-FTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKD-DETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCC-cCcHHHCCCCCCCEEEEEeC
Confidence            78999999999999 99999999999999999999999999999999999999 99999999999999999654

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.61  E-value=3.9e-15  Score=117.57  Aligned_cols=79  Identities=10%  Similarity=0.255  Sum_probs=76.5

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      +..|+|+|++.+|+++.++|.+++|++.||.+++++.|+|+++|+|+|+|+.|+++.|+.+|++++|++|+++++++||
T Consensus         9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG   87 (87)
T cd01763           9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG   87 (87)
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence            3568999999999999999999999999999999999999999999999999999999999999999999999999987

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.61  E-value=1.8e-15  Score=114.73  Aligned_cols=68  Identities=25%  Similarity=0.379  Sum_probs=64.5

Q ss_pred             EEEEec-CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCC-CccccCCCCCCCEEEEE
Q 036691          288 IFVKTW-GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN-HVLARYNIQKHSTLHMV  355 (426)
Q Consensus       288 i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~-~tL~~y~I~~~~ti~l~  355 (426)
                      |+|++. +|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ .+|++|||++|++||+.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            478999 999999999999999999999999999999999999999999987 68999999999999874

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.60  E-value=2.8e-15  Score=113.91  Aligned_cols=71  Identities=32%  Similarity=0.512  Sum_probs=66.8

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      +.|+||+..|+ .. +++++++||++||++|++++|+|+++|+|+|+|+.|+| +.+|++||+++++++|+++|
T Consensus         1 ~~i~vk~~~g~-~~-l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d-~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EE-IEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKD-TDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EE-EEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCC-CCcHHHcCCCCCCEEEEEEC
Confidence            46899999997 47 99999999999999999999999999999999999999 99999999999999999764

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.59  E-value=2.4e-15  Score=114.12  Aligned_cols=68  Identities=21%  Similarity=0.413  Sum_probs=64.1

Q ss_pred             EEEEcC-CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEE
Q 036691           64 LFVKIP-TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHL  132 (426)
Q Consensus        64 i~Vk~~-~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l  132 (426)
                      |+||+. +|+++. +++++++||++||++|++++|+|+++|+|+|+|+.|+|+..+|++|+|++++++++
T Consensus         1 l~v~~~~~g~~~~-l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l   69 (71)
T cd01796           1 ITVYTARSETTFS-LDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVL   69 (71)
T ss_pred             CEEEECCCCCEEE-EEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEE
Confidence            578999 999999 99999999999999999999999999999999999998347899999999999997

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.59  E-value=2.7e-15  Score=116.65  Aligned_cols=73  Identities=23%  Similarity=0.214  Sum_probs=70.2

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEE--EeCCeEeecccccccccccccCcEEEEEee
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTL--VYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L--~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      .|+|+||+..|+++. +++++++||++||++|+++.|+|+++|+|  +|+|+.|+| +.+|++|||++|++|+++++
T Consensus         2 ~~~i~Vk~~~G~~~~-~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D-~~tL~~~gi~~gs~l~l~~~   76 (80)
T cd01792           2 GWDLKVKMLGGNEFL-VSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQD-GVPLVSQGLGPGSTVLLVVQ   76 (80)
T ss_pred             ceEEEEEeCCCCEEE-EEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCC-CCCHHHcCCCCCCEEEEEEE
Confidence            489999999999999 99999999999999999999999999999  899999999 89999999999999999876

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.58  E-value=7.7e-15  Score=110.80  Aligned_cols=69  Identities=38%  Similarity=0.560  Sum_probs=65.6

Q ss_pred             EcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           67 KIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        67 k~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      |+++|+++. ++|++++||.+||++|+++.|+|++.|+|+|+|+.|+| +.+|++|+|+++++|++..+.+
T Consensus         1 k~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d-~~tL~~~~i~~~~~I~l~~k~~   69 (69)
T PF00240_consen    1 KTLSGKTFT-LEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDD-DKTLSDYGIKDGSTIHLVIKPR   69 (69)
T ss_dssp             EETTSEEEE-EEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEEST-TSBTGGGTTSTTEEEEEEESSE
T ss_pred             CCCCCcEEE-EEECCCCCHHHhhhhcccccccccccceeeeeeecccC-cCcHHHcCCCCCCEEEEEEecC
Confidence            678999999 99999999999999999999999999999999999988 9999999999999999988753

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.57  E-value=6.6e-15  Score=112.49  Aligned_cols=72  Identities=21%  Similarity=0.206  Sum_probs=64.7

Q ss_pred             CcEEEEEecCCcEE--EEEEcCCCcHHHHHHHHHhHhC--CCCcceEEEEcCeecCCCCccccCC--CCCCCEEEEEe
Q 036691          285 PFQIFVKTWGGKTI--TLDVQPYNTVQDVKVKLFDKLQ--TPLHLQSIVFAGKRLFENHVLARYN--IQKHSTLHMVL  356 (426)
Q Consensus       285 ~m~i~v~~~~g~~~--~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~gk~L~d~~tL~~y~--I~~~~ti~l~~  356 (426)
                      ++.++||+++|+++  ++++++++||++||++|+...+  .|+++|||||+||.|+|+.||++|.  ++++.|||||+
T Consensus         1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            47899999999984  4555899999999999999875  5589999999999999999999996  99999999986

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.56  E-value=7.6e-15  Score=112.98  Aligned_cols=70  Identities=20%  Similarity=0.306  Sum_probs=66.6

Q ss_pred             CCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecccee
Q 036691           69 PTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEIL  140 (426)
Q Consensus        69 ~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~  140 (426)
                      ++|++++ +++++++||++||++|+...|+|+++|+|+|+|+.|+| +.+|++|+|+++++||++++++||-
T Consensus         5 l~g~~~~-l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d-~~tL~~~~i~~g~~l~v~~~~~gg~   74 (76)
T cd01800           5 LNGQMLN-FTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKD-SNSLAYYNLANGTIIHLQLKERGGR   74 (76)
T ss_pred             cCCeEEE-EEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCC-CCcHHHcCCCCCCEEEEEEecCCCc
Confidence            4789999 99999999999999999999999999999999999999 9999999999999999999988763

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.54  E-value=3.7e-14  Score=111.98  Aligned_cols=80  Identities=10%  Similarity=0.194  Sum_probs=76.8

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      .+..|+|+|++.+|+.+. +.|.+++|+..||.+++++.|+|+++|+|+|+|+.|++ +.|+++|+++++++|+++++++
T Consensus         8 ~~~~i~I~v~~~~g~~~~-~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~-~~T~~~l~m~d~d~I~v~l~l~   85 (87)
T cd01763           8 ISEHINLKVKGQDGNEVF-FKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRD-NQTPDDLGMEDGDEIEVMLEQT   85 (87)
T ss_pred             CCCeEEEEEECCCCCEEE-EEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCC-CCCHHHcCCCCCCEEEEEEecc
Confidence            457899999999999999 99999999999999999999999999999999999999 9999999999999999999998


Q ss_pred             ce
Q 036691          138 EI  139 (426)
Q Consensus       138 ~g  139 (426)
                      ||
T Consensus        86 GG   87 (87)
T cd01763          86 GG   87 (87)
T ss_pred             cC
Confidence            86

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.53  E-value=3.4e-14  Score=107.88  Aligned_cols=70  Identities=20%  Similarity=0.227  Sum_probs=66.7

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      |.|+|++. |+++++++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++.
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence            57899996 99999999999999999999999999999999999999999999999999999999999874

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.51  E-value=3.7e-14  Score=108.35  Aligned_cols=73  Identities=23%  Similarity=0.339  Sum_probs=63.7

Q ss_pred             ceeEEEEcCCCceeE-EEEEcCCCcHHHHHHHHHHHhC--CCCCceEEEeCCeEeecccccccccc--cccCcEEEEEe
Q 036691           61 EMKLFVKIPTNQTAT-VVEAMPYHTVQNIKTMIQVKEG--IQSDQFTLVYDGKLLKEDTATMTSMN--IKSESIIHLVF  134 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~-~~~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~d~~~tL~~y~--I~~~s~i~l~~  134 (426)
                      .+.|+||+++|+.+. .+++++++||.+||++|++..+  .|+++|||||+|+.|.| +.+|++|.  +.++.+|||+.
T Consensus         1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD-~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPD-HLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccc-hhhHHHHhhcccCCceEEEEe
Confidence            378999999999854 0455899999999999999874  56899999999999999 99999996  99999999963

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.49  E-value=1.1e-13  Score=105.67  Aligned_cols=70  Identities=17%  Similarity=0.197  Sum_probs=65.2

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE---cCeecCCCCccccCCCCCCCEEEEEe
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF---AGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      |.|.|+. .|+++++++++++||++||++|++++|+|+++|+|+|   +|+.|+|+.+|++|+|++|++|+|+.
T Consensus         1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG   73 (74)
T cd01813           1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG   73 (74)
T ss_pred             CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence            4577775 7899999999999999999999999999999999996   99999999999999999999998873

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.48  E-value=8.4e-14  Score=105.69  Aligned_cols=69  Identities=19%  Similarity=0.330  Sum_probs=65.8

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      |+|+||+. |+++. +++++++||++||++|++.+|+|+++|+|+|+|+.|.| +.+|++|+|++|++|+++
T Consensus         1 i~i~vk~~-g~~~~-i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d-~~~L~~~~i~~g~~l~v~   69 (71)
T cd01812           1 IRVRVKHG-GESHD-LSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDD-AETLDMSGVKDGSKVMLL   69 (71)
T ss_pred             CEEEEEEC-CEEEE-EEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCc-cCcHHHcCCCCCCEEEEe
Confidence            57899995 99998 99999999999999999999999999999999999999 999999999999999985

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.45  E-value=2.2e-13  Score=104.04  Aligned_cols=69  Identities=20%  Similarity=0.375  Sum_probs=65.1

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe---CCeEeecccccccccccccCcEEEEE
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY---DGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      |.|.||. .|+++. +++++++||++||++|++++|+|+++|+|+|   .|+.|.| +.+|++|+|++|+.|+|+
T Consensus         1 ~~i~vk~-~g~~~~-v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D-~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVKW-GGQEYS-VTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAED-DVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEEE-CCEEEE-EEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCC-CcCHHHcCCCCCCEEEEE
Confidence            5688898 899999 9999999999999999999999999999996   8999999 999999999999999984

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>smart00213 UBQ Ubiquitin homologues

Probab=99.40  E-value=8.3e-13  Score=97.78  Aligned_cols=64  Identities=39%  Similarity=0.589  Sum_probs=61.5

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHS  350 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~  350 (426)
                      |+|+|++.+ +++.+++++++||++||++|+.++|+|++.|+|+|+|+.|.|+.+|++|||++|+
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            689999998 7999999999999999999999999999999999999999999999999999885

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.40  E-value=8.8e-13  Score=100.78  Aligned_cols=65  Identities=26%  Similarity=0.284  Sum_probs=59.4

Q ss_pred             EecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecC-CCCccccCCCC-CCCEEEEEe
Q 036691          291 KTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLF-ENHVLARYNIQ-KHSTLHMVL  356 (426)
Q Consensus       291 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~-d~~tL~~y~I~-~~~ti~l~~  356 (426)
                      +...|.+++++++|++||++||++|+.++|+|+++|+| |+|+.|. |++||++||++ +|+++||.+
T Consensus         8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            34468999999999999999999999999999999999 9999995 77999999998 889999864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.40  E-value=3.9e-13  Score=101.23  Aligned_cols=56  Identities=30%  Similarity=0.496  Sum_probs=50.5

Q ss_pred             EEcC-CCcHHHHHHHHHhHh--CCC-CcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691          301 DVQP-YNTVQDVKVKLFDKL--QTP-LHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       301 ~v~~-~~tV~~lK~~i~~~~--gip-~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      +|+| ++||++||++|+++.  |+| +++|||+|+||.|+|++||++|||++|++|||+.
T Consensus        15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            3454 679999999999995  575 9999999999999999999999999999999975

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.40  E-value=8.4e-13  Score=100.90  Aligned_cols=66  Identities=20%  Similarity=0.179  Sum_probs=60.1

Q ss_pred             EcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccc-cCcEEEEEe
Q 036691           67 KIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIK-SESIIHLVF  134 (426)
Q Consensus        67 k~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~-~~s~i~l~~  134 (426)
                      |...|.+++ +++++++||++||++|++++|+|+++|+| |+|+.|.||+.+|++|+++ +|+++||.+
T Consensus         8 ~~~~~~t~~-l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           8 AQSHTVTIW-LTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             cccCCCeEE-EEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            445788999 99999999999999999999999999999 9999997548999999999 889999853

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.37  E-value=4.7e-13  Score=100.83  Aligned_cols=53  Identities=25%  Similarity=0.343  Sum_probs=48.8

Q ss_pred             CCCcHHHHHHHHHHHh--CCC-CCceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691           81 PYHTVQNIKTMIQVKE--GIQ-SDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF  134 (426)
Q Consensus        81 ~~~tV~~lK~~I~~~~--gip-~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~  134 (426)
                      .++||.+||++|+++.  |++ +++|||+|+|+.|+| ++||++|+|++|++|||+.
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D-~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKD-DQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCC-CCcHHHcCCCCCCEEEEEe
Confidence            4789999999999994  675 999999999999999 9999999999999999964

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>smart00213 UBQ Ubiquitin homologues

Probab=99.35  E-value=2e-12  Score=95.68  Aligned_cols=64  Identities=36%  Similarity=0.509  Sum_probs=60.8

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCc
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSES  128 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s  128 (426)
                      |+|+||+.+ +++. ++++++.||++||++|+++.|+|++.|+|+|+|+.|.| +.+|++|++++|+
T Consensus         1 ~~i~vk~~~-~~~~-~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d-~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTIT-LEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLED-DRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEE-EEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCC-CCCHHHcCCcCCC
Confidence            689999988 7888 99999999999999999999999999999999999999 8999999999875

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.34  E-value=2.6e-12  Score=127.17  Aligned_cols=73  Identities=21%  Similarity=0.427  Sum_probs=70.5

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhC---CCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQ---TPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      |+|+||++.|+++.++|++++||.+||++|+...|   +|+++|+|+|+||.|+|+.+|++|+|+++++|++++..
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k   76 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK   76 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence            78999999999999999999999999999999998   99999999999999999999999999999999998764

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.33  E-value=1.4e-12  Score=104.93  Aligned_cols=77  Identities=17%  Similarity=0.196  Sum_probs=68.6

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHH-----HHhCCC--CCceEEEeCCeEeecccccccccc------ccc
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQ-----VKEGIQ--SDQFTLVYDGKLLKEDTATMTSMN------IKS  126 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~-----~~~gip--~~~q~L~~~g~~L~d~~~tL~~y~------I~~  126 (426)
                      +.+.|.+|..+|..+-|..+++++||++||++|+     +++|+|  +++|+|||+|+.|+| ++||++|+      +..
T Consensus         3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD-~~TL~d~~~p~g~~~~~   81 (113)
T cd01814           3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILEN-SKTVGECRSPVGDIAGG   81 (113)
T ss_pred             ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCC-CCcHHHhCCcccccCCC
Confidence            4567788888998887899999999999999999     555666  999999999999999 99999999      788


Q ss_pred             CcEEEEEeecc
Q 036691          127 ESIIHLVFCPK  137 (426)
Q Consensus       127 ~s~i~l~~~~~  137 (426)
                      ..|+|+++|..
T Consensus        82 ~~TmHvvlr~~   92 (113)
T cd01814          82 VITMHVVVQPP   92 (113)
T ss_pred             ceEEEEEecCC
Confidence            89999999865

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.31  E-value=2.5e-12  Score=100.10  Aligned_cols=59  Identities=19%  Similarity=0.174  Sum_probs=54.3

Q ss_pred             CccCCCCCHHHHHHHHHHHhCCCcccceEEecCeeccCC-C-cccCCCCCCCeEEEEEecC
Q 036691            1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAG-R-LVDYGIRNNSTLHFLHQNL   59 (426)
Q Consensus         1 l~v~~~dtv~~~K~~i~~~~gi~~~~q~L~~~g~~L~d~-~-l~~y~i~~~~~l~l~~~~~   59 (426)
                      |+|+|++||.+||..|++++++|+.+|+|+|+|+.|.|+ + |++|||.++|+|+|+++.|
T Consensus        19 L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP   79 (107)
T cd01795          19 LLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP   79 (107)
T ss_pred             EEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence            579999999999999999999999999999999999654 4 9999999999999998643

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.29  E-value=4.3e-12  Score=102.04  Aligned_cols=78  Identities=21%  Similarity=0.254  Sum_probs=66.9

Q ss_pred             CCcEEEEEecCCc-EEEEEEcCCCcHHHHHHHHH-----hHhCCC--CcceEEEEcCeecCCCCccccCC------CCCC
Q 036691          284 SPFQIFVKTWGGK-TITLDVQPYNTVQDVKVKLF-----DKLQTP--LHLQSIVFAGKRLFENHVLARYN------IQKH  349 (426)
Q Consensus       284 ~~m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~-----~~~gip--~~~q~L~~~gk~L~d~~tL~~y~------I~~~  349 (426)
                      ..+.|.++..+|. .=.+.+++++||++||++|+     +++|+|  +++|+|||+||.|+|++||++|+      +...
T Consensus         3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~   82 (113)
T cd01814           3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV   82 (113)
T ss_pred             ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence            3466788888884 44788899999999999999     555666  99999999999999999999999      8888


Q ss_pred             CEEEEEeecCCC
Q 036691          350 STLHMVLAPSSR  361 (426)
Q Consensus       350 ~ti~l~~~~~gg  361 (426)
                      .|+|+++|....
T Consensus        83 ~TmHvvlr~~~~   94 (113)
T cd01814          83 ITMHVVVQPPLA   94 (113)
T ss_pred             eEEEEEecCCCC
Confidence            999999986543

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.27  E-value=8.2e-12  Score=123.71  Aligned_cols=72  Identities=26%  Similarity=0.446  Sum_probs=69.0

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhC---CCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG---IQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      |+|+||++.|+++. ++|++++||.+||++|++..|   +|+++|+|+|+|+.|+| +.+|++|+|+++++|++++.
T Consensus         1 MkItVKtl~g~~~~-IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~D-d~tL~dy~I~e~~~Ivvmv~   75 (378)
T TIGR00601         1 MTLTFKTLQQQKFK-IDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSD-DKTVREYKIKEKDFVVVMVS   75 (378)
T ss_pred             CEEEEEeCCCCEEE-EEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCC-CCcHHHcCCCCCCEEEEEec
Confidence            79999999999999 999999999999999999998   99999999999999999 99999999999999988665

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.23  E-value=1.9e-11  Score=95.21  Aligned_cols=63  Identities=24%  Similarity=0.289  Sum_probs=58.7

Q ss_pred             eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           73 TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        73 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      ..+ ++|++++||.+||.+|.+++++||.+|+|+|+|+.|.||.+||++|||..+|+|+|.++.
T Consensus        16 ~~~-L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide   78 (107)
T cd01795          16 EKA-LLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE   78 (107)
T ss_pred             Cce-EEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence            345 889999999999999999999999999999999999998999999999999999997653

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.20  E-value=7.6e-11  Score=88.51  Aligned_cols=67  Identities=45%  Similarity=0.654  Sum_probs=63.7

Q ss_pred             EEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691          290 VKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       290 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      |+..+|+.+.+++.++.||++||++|+..+|+|++.|+|+|+|+.|+|+.+|.+|++.++++|+++.
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            6777899999999999999999999999999999999999999999999999999999999998864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.14  E-value=1.6e-10  Score=87.91  Aligned_cols=71  Identities=28%  Similarity=0.429  Sum_probs=66.0

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCC-cceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPL-HLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      |+|+|++.+|+.+.+.|.+++++..|++..+++.|+|+ +.++|+|+|+.|.++.|+++||+++|++|++++
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            67999999999999999999999999999999999999 999999999999999999999999999999863

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.14  E-value=6.3e-11  Score=117.49  Aligned_cols=75  Identities=23%  Similarity=0.387  Sum_probs=70.8

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      .+.|.||+.++ .+.+.|..+.||.+||+.|....++|+++++|||+||.|+|+.||..|||++|.|||||.+...
T Consensus        15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~   89 (493)
T KOG0010|consen   15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQP   89 (493)
T ss_pred             eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCC
Confidence            47799999887 8999999999999999999999999999999999999999999999999999999999998653

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.09  E-value=2.9e-10  Score=85.32  Aligned_cols=66  Identities=39%  Similarity=0.605  Sum_probs=62.4

Q ss_pred             EEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           66 VKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        66 Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      |+..+|+.+. +.++++.||.+||++|++..|+|++.|+|+|+|+.|+| ..+|++|++.++++|++.
T Consensus         2 v~~~~~~~~~-~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d-~~~l~~~~v~~~~~i~v~   67 (69)
T cd01769           2 VKTLTGKTFE-LEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKD-DKTLSDYGIQDGSTLHLV   67 (69)
T ss_pred             eEccCCCEEE-EEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCC-cCCHHHCCCCCCCEEEEE
Confidence            6777899999 99999999999999999999999999999999999998 999999999999999974

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.07  E-value=1.6e-10  Score=114.65  Aligned_cols=75  Identities=28%  Similarity=0.496  Sum_probs=70.3

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      ..++|.||+.++ .+. +.|..+.||.+||+.|....+.|+++++|||+||.|.| +.||..|||++|.||||+.+..
T Consensus        14 ~~irV~Vkt~~d-k~~-~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD-~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   14 SLIRVTVKTPKD-KYE-VNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKD-DDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             ceeEEEEecCCc-cee-EecccchHHHHHHHHHHHhcCCChhHeeeeecCccccC-hhhHHHcCCCCCcEEEEEeccC
Confidence            468999999888 677 99999999999999999999999999999999999999 9999999999999999988754

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=99.05  E-value=1.2e-09  Score=82.39  Aligned_cols=73  Identities=51%  Similarity=0.725  Sum_probs=69.4

Q ss_pred             EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691          288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      +++.+..|+++.+++.+.++|+.+|.+|+...|+|.+.|++.++|+.|+|+.++.+|+|.+++++++..++++
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~   74 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRG   74 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCC
Confidence            5778889999999999999999999999999999999999999999999999999999999999999988763

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=99.05  E-value=3.5e-10  Score=106.79  Aligned_cols=74  Identities=26%  Similarity=0.458  Sum_probs=70.9

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhC--CCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQ--TPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      |.|+||++.|.+|++++.|++||.++|++|+...|  .|+.+|.|||+||.|.|+.|+.+|+|+.++.|.+++...
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence            78999999999999999999999999999999999  999999999999999999999999999999998888655

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=99.05  E-value=2.5e-10  Score=83.85  Aligned_cols=59  Identities=29%  Similarity=0.513  Sum_probs=51.5

Q ss_pred             CccCCCCCHHHHHHHHHHHhCCCcccceEEec---Cee-c-cCCC-cccCCCCCCCeEEEEEecCC
Q 036691            1 MKVKKSEPIKNLKAMIHVKEGISEDICDLFFA---GDR-L-EAGR-LVDYGIRNNSTLHFLHQNLS   60 (426)
Q Consensus         1 l~v~~~dtv~~~K~~i~~~~gi~~~~q~L~~~---g~~-L-~d~~-l~~y~i~~~~~l~l~~~~~~   60 (426)
                      ++|+|+.+|++||++|++.+|++. +|||.|+   |++ | .+++ ||+|||+++..|.|+.+.+.
T Consensus        15 l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p~   79 (80)
T cd01811          15 LRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFPP   79 (80)
T ss_pred             EEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCCC
Confidence            479999999999999999999999 6999995   554 4 5556 99999999999999988754

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.03  E-value=1.3e-09  Score=82.74  Aligned_cols=70  Identities=21%  Similarity=0.378  Sum_probs=65.4

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCC-CceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQS-DQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      |+|+|+..+|+.+. +.|.+++++..|++..+++.|+|+ +..+|+|.|+.|++ +.|+++|++++|++|++.
T Consensus         1 I~i~v~~~~~~~~~-~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~-~~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen    1 ITIKVRSQDGKEIK-FKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDP-NDTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             EEEEEEETTSEEEE-EEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-T-TSCHHHHT-STTEEEEEE
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCC-CCCHHHCCCCCCCEEEEE
Confidence            68999999999999 999999999999999999999999 99999999999999 999999999999999975

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=98.93  E-value=1.6e-09  Score=102.45  Aligned_cols=72  Identities=35%  Similarity=0.540  Sum_probs=68.2

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhC--CCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG--IQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      |.|+||++.|.+++ +++.|++||.++|++|+...|  +|+.+|+|||+|+.|.| +.++.+|++..++.|.+.+.
T Consensus         1 m~lt~KtL~q~~F~-iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D-~~tv~Eykv~E~~fiVvMls   74 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFT-IEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKD-ETTVGEYKVKEKKFIVVMLS   74 (340)
T ss_pred             CeeEeeeccCceeE-eecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccC-CcchhhhccccCceEEEEEe
Confidence            78999999999999 999999999999999999999  99999999999999999 99999999999888876554

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.93  E-value=5.5e-09  Score=78.76  Aligned_cols=72  Identities=38%  Similarity=0.579  Sum_probs=68.3

Q ss_pred             EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      +++++..|+++. +++.++.+|..+|.+|+.+.|+|+++|++.|.|+.|+| +.++.+|+|..++++++..+++
T Consensus         2 ~~~~~~~gk~~~-~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d-~~~l~~~~i~~~~~~~l~~~~~   73 (75)
T KOG0001|consen    2 IFVKTLDGKTIT-LEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLED-GRTLADYNIQEGSTLHLVLSLR   73 (75)
T ss_pred             EEEEecCCCEEE-EEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcC-CCcHHHhCCCCCCEEEEEEecC
Confidence            577888999999 99999999999999999999999999999999999999 8999999999999999988765

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.88  E-value=1.1e-08  Score=80.03  Aligned_cols=70  Identities=17%  Similarity=0.284  Sum_probs=57.9

Q ss_pred             eEEEEcCC-CceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE-eCCe-----EeecccccccccccccCcEEEEE
Q 036691           63 KLFVKIPT-NQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV-YDGK-----LLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        63 ~i~Vk~~~-g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g~-----~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      .|+|+... ..... ..++++.||.+||++++...|+||+.|+|. |.|+     .|.+|..+|++|++++|.+||++
T Consensus         3 ~v~i~~~~~~~~~e-kr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv   79 (84)
T cd01789           3 TVNITSSADSFSFE-KKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI   79 (84)
T ss_pred             EEEEEeCCCceeee-EecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence            45555533 33344 669999999999999999999999999994 8888     67666999999999999999984

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.84  E-value=1.9e-08  Score=78.79  Aligned_cols=69  Identities=17%  Similarity=0.291  Sum_probs=57.8

Q ss_pred             EEEEEec-CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEE-EEcCe-----ec-CCCCccccCCCCCCCEEEEE
Q 036691          287 QIFVKTW-GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI-VFAGK-----RL-FENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       287 ~i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L-~~~gk-----~L-~d~~tL~~y~I~~~~ti~l~  355 (426)
                      .++|... +....+.+++++.||++||++++..+|+|+..|+| +|.|+     .| +|+.+|++||+++|++||++
T Consensus         3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv   79 (84)
T cd01789           3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI   79 (84)
T ss_pred             EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence            4555543 23445566999999999999999999999999999 58888     46 67889999999999999986

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.78  E-value=2.3e-08  Score=80.20  Aligned_cols=99  Identities=16%  Similarity=0.289  Sum_probs=74.9

Q ss_pred             ceeEEEcCCCcE-EEEeecccccHHHHHHHHHHHhCCCCCceeEEecCeecCCCccccccCCCCCcccccCCCCcEEEEE
Q 036691          213 IQIFVRTPIEEI-VRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVK  291 (426)
Q Consensus       213 ~~i~V~~~~g~~-~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l~~~~m~i~v~  291 (426)
                      |.+|+..+..++ +.+++.+++||.+||++|+.....||++|+|+..+..|+|++||++||+.+...-.-.+..+-+.++
T Consensus         1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r   80 (119)
T cd01788           1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR   80 (119)
T ss_pred             CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence            456666555554 8899999999999999999999999999999977788999999999999543322223444556777


Q ss_pred             ecCCcEEEEEEcCCCcHHHH
Q 036691          292 TWGGKTITLDVQPYNTVQDV  311 (426)
Q Consensus       292 ~~~g~~~~l~v~~~~tV~~l  311 (426)
                      ..+|.--.+++.|..+--+|
T Consensus        81 ~~d~~fE~l~I~p~S~pp~l  100 (119)
T cd01788          81 SSDDTFEPLRIEPFSSPPEL  100 (119)
T ss_pred             cCCCCccceeeeeCCCCCCc
Confidence            66666666777776654433

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=98.73  E-value=3.1e-08  Score=72.95  Aligned_cols=68  Identities=29%  Similarity=0.305  Sum_probs=61.3

Q ss_pred             ceeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCceeEEec--C---eecCCCccccccCCCCCccccc
Q 036691          213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYA--G---TKLEACKTLASYGIKNNYVLDV  281 (426)
Q Consensus       213 ~~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~--g---~~L~d~~tL~~y~I~~~~~l~l  281 (426)
                      ++|+|+.+++..+++.|+|..+|..+|++|+...|++ ..|+|.|.  |   +.|.+.++||+|||.....|.|
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~-g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~l   73 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS-GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICL   73 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc-cceEEEeecCCcccccccccccHhhhcceeccEEEE
Confidence            4799999999999999999999999999999999998 49999985  2   4469999999999998888776

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.62  E-value=1.7e-07  Score=73.89  Aligned_cols=69  Identities=19%  Similarity=0.298  Sum_probs=55.7

Q ss_pred             EEEEEecCC--cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEc----C---eec-CCCCccccCCCCCCCEEEEE
Q 036691          287 QIFVKTWGG--KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFA----G---KRL-FENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       287 ~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----g---k~L-~d~~tL~~y~I~~~~ti~l~  355 (426)
                      .|+|....-  ...+.+++++.||++||.+|+..+|+|++.|+|.+.    +   ..+ +|.++|++||+++|++||+.
T Consensus         3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            455655443  488899999999999999999999999999999776    1   223 56889999999999999985

>PLN02560 enoyl-CoA reductase

Probab=98.60  E-value=1.2e-07  Score=92.04  Aligned_cols=69  Identities=22%  Similarity=0.328  Sum_probs=62.2

Q ss_pred             cEEEEEecCCcEE---EEEEcCCCcHHHHHHHHHhHhCC-CCcceEEEEc---C----eecCCCCccccCCCCCCCEEEE
Q 036691          286 FQIFVKTWGGKTI---TLDVQPYNTVQDVKVKLFDKLQT-PLHLQSIVFA---G----KRLFENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       286 m~i~v~~~~g~~~---~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~L~~~---g----k~L~d~~tL~~y~I~~~~ti~l  354 (426)
                      |.|.|+..+|+.+   +++++++.||++||++|+++.++ ++++|||.+.   |    +.|+|+.+|++||+++|++|++
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~   80 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF   80 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence            6789998889887   79999999999999999999986 8999999983   3    4889999999999999999766

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.60  E-value=1.3e-07  Score=75.85  Aligned_cols=76  Identities=18%  Similarity=0.269  Sum_probs=61.7

Q ss_pred             eEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccccccc-------ccCcEEEEEee
Q 036691           63 KLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNI-------KSESIIHLVFC  135 (426)
Q Consensus        63 ~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I-------~~~s~i~l~~~  135 (426)
                      .+|+.....++..++++.++.||.+||++|+.-...||++|+|+-.+..|+| ++||+|||+       ++.+++-|.+|
T Consensus         2 dvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD-~kTL~d~g~t~~~akaq~pA~vgLa~r   80 (119)
T cd01788           2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDD-GKTLGDCGFTSQTARPQAPATVGLAFR   80 (119)
T ss_pred             ceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecc-cccHHHcCccccccccCCCCeEEEEEe
Confidence            3444443444444499999999999999999999999999999977778888 999999999       77888888887


Q ss_pred             ccce
Q 036691          136 PKEI  139 (426)
Q Consensus       136 ~~~g  139 (426)
                      ..+|
T Consensus        81 ~~d~   84 (119)
T cd01788          81 SSDD   84 (119)
T ss_pred             cCCC
Confidence            5433

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.59  E-value=4.1e-07  Score=74.70  Aligned_cols=76  Identities=20%  Similarity=0.384  Sum_probs=57.8

Q ss_pred             cEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHh-------CCCCcceEEEEcCeecCCCCccccCCCCCCC------E
Q 036691          286 FQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKL-------QTPLHLQSIVFAGKRLFENHVLARYNIQKHS------T  351 (426)
Q Consensus       286 m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~-------gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~------t  351 (426)
                      +.+.++..+|. +..+.+++++||++||+.|.+..       -..+...||||.||.|+|+.||++|++..++      +
T Consensus         3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v   82 (111)
T PF13881_consen    3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV   82 (111)
T ss_dssp             EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred             EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence            45667777998 88999999999999999999764       2345688999999999999999999998776      6


Q ss_pred             EEEEeecCCC
Q 036691          352 LHMVLAPSSR  361 (426)
Q Consensus       352 i~l~~~~~gg  361 (426)
                      +||+++....
T Consensus        83 mHlvvrp~~~   92 (111)
T PF13881_consen   83 MHLVVRPNAP   92 (111)
T ss_dssp             EEEEE-SSSS
T ss_pred             EEEEecCCCC
Confidence            7888875433

>PLN02560 enoyl-CoA reductase

Probab=98.53  E-value=1.9e-07  Score=90.59  Aligned_cols=69  Identities=16%  Similarity=0.253  Sum_probs=61.7

Q ss_pred             eeEEEEcCCCcee---EEEEEcCCCcHHHHHHHHHHHhCC-CCCceEEEeC---C----eEeecccccccccccccCcEE
Q 036691           62 MKLFVKIPTNQTA---TVVEAMPYHTVQNIKTMIQVKEGI-QSDQFTLVYD---G----KLLKEDTATMTSMNIKSESII  130 (426)
Q Consensus        62 m~i~Vk~~~g~~~---~~~~v~~~~tV~~lK~~I~~~~gi-p~~~q~L~~~---g----~~L~d~~~tL~~y~I~~~s~i  130 (426)
                      |+|.|+..+|+.+   + ++++++.||++||++|+++.++ ++++|||.+.   |    +.|.| +.+|++||+++++++
T Consensus         1 M~I~Vk~~~Gk~i~~~~-lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d-~ktL~d~gv~~gstL   78 (308)
T PLN02560          1 MKVTVVSRSGREIIKGG-LEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDD-SKSLKDYGLGDGGTV   78 (308)
T ss_pred             CEEEEEcCCCCeeccee-EEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCC-CCCHHhcCCCCCceE
Confidence            6789998889987   6 9999999999999999999986 8999999983   4    37888 899999999999998


Q ss_pred             EE
Q 036691          131 HL  132 (426)
Q Consensus       131 ~l  132 (426)
                      ++
T Consensus        79 y~   80 (308)
T PLN02560         79 VF   80 (308)
T ss_pred             EE
Confidence            86

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.52  E-value=7.3e-07  Score=73.21  Aligned_cols=76  Identities=21%  Similarity=0.402  Sum_probs=55.5

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhC-------CCCCceEEEeCCeEeecccccccccccccCc-----
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG-------IQSDQFTLVYDGKLLKEDTATMTSMNIKSES-----  128 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~g-------ip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s-----  128 (426)
                      .+.|.++..+|..+.++..++++||++||+.|...+-       ..++..||||.|+.|+| +.+|+++.+..++     
T Consensus         2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d-~~tL~~~~~~~~~~~~~~   80 (111)
T PF13881_consen    2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILED-NKTLSDCRLPSGETPGGP   80 (111)
T ss_dssp             SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-S-SSBTGGGT--TTSETT--
T ss_pred             eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCC-cCcHHHhCCCCCCCCCCC
Confidence            3556667778994444999999999999999997642       13668999999999999 9999999988766     


Q ss_pred             -EEEEEeecc
Q 036691          129 -IIHLVFCPK  137 (426)
Q Consensus       129 -~i~l~~~~~  137 (426)
                       ++||+++..
T Consensus        81 ~vmHlvvrp~   90 (111)
T PF13881_consen   81 TVMHLVVRPN   90 (111)
T ss_dssp             EEEEEEE-SS
T ss_pred             EEEEEEecCC
Confidence             678877654

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.51  E-value=6.2e-07  Score=70.71  Aligned_cols=70  Identities=27%  Similarity=0.364  Sum_probs=55.8

Q ss_pred             eEEEEcCCC--ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeC----C---eEeecccccccccccccCcEEEEE
Q 036691           63 KLFVKIPTN--QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYD----G---KLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        63 ~i~Vk~~~g--~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~----g---~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      .|+|.....  .... ..++++.||.+||.+++...|+|++.|+|.+.    +   ..+.||..+|.+|++++|.+||+.
T Consensus         3 ~l~It~~~~~~~~~e-kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    3 KLFITSSNSKQRSVE-KRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEESSSSSSEEE-EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEeCCCCCeeEE-EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            455555433  4666 89999999999999999999999999999875    1   245666899999999999999974

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=2.4e-07  Score=99.06  Aligned_cols=72  Identities=26%  Similarity=0.429  Sum_probs=69.3

Q ss_pred             eEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           63 KLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        63 ~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      .|.|||++.++.+ +.|...+||.+||..|.++..|+.+.|||||+|+.|.| ++++.+|+| +|-+|||+-|..
T Consensus         4 ~v~vktld~r~~t-~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~-~k~vq~~~v-dgk~~hlverpp   75 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRT-FIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQD-DKKVQEYNV-DGKVIHLVERPP   75 (1143)
T ss_pred             ceeeeecccceeE-EEechHHHHHHHHHHHHHhcccccccceeeecceeecc-chhhhhccC-CCeEEEeeccCC
Confidence            4899999999999 99999999999999999999999999999999999999 999999999 999999998864

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=6.2e-07  Score=95.96  Aligned_cols=72  Identities=22%  Similarity=0.436  Sum_probs=69.0

Q ss_pred             EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      .+.|||++.++.++.+...+||.++|..|+++..|+.+.|||||.|+.|.|++++.+|+| +|-+|||+=|..
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp   75 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP   75 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence            488999999999999999999999999999999999999999999999999999999999 999999998743

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.28  E-value=2.3e-06  Score=65.81  Aligned_cols=52  Identities=21%  Similarity=0.219  Sum_probs=47.2

Q ss_pred             cCCCcHHHHHHHHHhHhC-CCCcceEE--EEcCeecCCCCccccCCCCCCCEEEE
Q 036691          303 QPYNTVQDVKVKLFDKLQ-TPLHLQSI--VFAGKRLFENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       303 ~~~~tV~~lK~~i~~~~g-ip~~~q~L--~~~gk~L~d~~tL~~y~I~~~~ti~l  354 (426)
                      .++.||++||..|+...+ +++++|||  .+.|+.|.|+.+|.+||+.+|++|++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            488899999999999876 58999998  48999999999999999999999876

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.24  E-value=6.4e-06  Score=59.15  Aligned_cols=65  Identities=35%  Similarity=0.399  Sum_probs=60.3

Q ss_pred             ecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691          292 TWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       292 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      ..+|....+.+.+..|++++++.++.+.|++++.|.|+++|..+.+...+.+|++..++++++..
T Consensus         4 ~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           4 LNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             ecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            34688899999999999999999999999999999999999999999988999999999998864

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.21  E-value=3.3e-06  Score=65.23  Aligned_cols=71  Identities=21%  Similarity=0.298  Sum_probs=44.4

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC---eec--CCCCccccCCCCCCCEEEEE
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG---KRL--FENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g---k~L--~d~~tL~~y~I~~~~ti~l~  355 (426)
                      ..|.|.|++.+ .+..++++|++|+.+|+++|++..++|.+.|.|..+.   ..+  .++.||+++||+.||.|+|.
T Consensus         3 ~~milRvrS~d-G~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    3 SSMILRVRSKD-GMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             ---EEEEE-SS-EEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             ccEEEEEECCC-CCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            46889999987 4577899999999999999999999999999885432   345  46889999999999999873

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.18  E-value=4e-06  Score=64.48  Aligned_cols=52  Identities=17%  Similarity=0.296  Sum_probs=46.9

Q ss_pred             cCCCcHHHHHHHHHHHhC-CCCCceEEE--eCCeEeecccccccccccccCcEEEE
Q 036691           80 MPYHTVQNIKTMIQVKEG-IQSDQFTLV--YDGKLLKEDTATMTSMNIKSESIIHL  132 (426)
Q Consensus        80 ~~~~tV~~lK~~I~~~~g-ip~~~q~L~--~~g~~L~d~~~tL~~y~I~~~s~i~l  132 (426)
                      +++.||.+||..|++..+ +++++|||.  +.|+.|.| +.+|++||+.+|++|++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d-~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKD-DDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCC-cccHhhcCCCCCCEEEE
Confidence            478899999999999876 589999995  88999999 88999999999999886

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.15  E-value=3.3e-06  Score=65.23  Aligned_cols=71  Identities=25%  Similarity=0.346  Sum_probs=44.2

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeC---CeEe-ecccccccccccccCcEEEE
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYD---GKLL-KEDTATMTSMNIKSESIIHL  132 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~---g~~L-~d~~~tL~~y~I~~~s~i~l  132 (426)
                      ++|-|.|++.+| +.. +++++++|+.+|+++|++..++|.+.|.|..+   ...+ .+++.+|+++||+.|+.++|
T Consensus         3 ~~milRvrS~dG-~~R-ie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL   77 (80)
T PF11543_consen    3 SSMILRVRSKDG-MKR-IEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYL   77 (80)
T ss_dssp             ---EEEEE-SSE-EEE-EEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE-
T ss_pred             ccEEEEEECCCC-CEE-EEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEE
Confidence            578899999777 566 89999999999999999999999999988542   2245 23488999999999999987

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=8.1e-06  Score=76.70  Aligned_cols=73  Identities=18%  Similarity=0.383  Sum_probs=63.7

Q ss_pred             cEEEEEec---CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE-eec
Q 036691          286 FQIFVKTW---GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV-LAP  358 (426)
Q Consensus       286 m~i~v~~~---~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~-~~~  358 (426)
                      |.++|+.-   ....++++|+.+.+|.+||+.++.+.|+|+++.+++|+||+|.++-|+..+.+...+.+|++ +|.
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence            45666653   22567889999999999999999999999999999999999999999999999999999988 454

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=1.8e-06  Score=61.69  Aligned_cols=69  Identities=14%  Similarity=0.160  Sum_probs=63.4

Q ss_pred             EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691          287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~  355 (426)
                      ++.+.+.-|+...+.+.++|||+++|+.|++++|-.++...|--.+..++|.-+|++|.|..|..+.|.
T Consensus         3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely   71 (73)
T KOG3493|consen    3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY   71 (73)
T ss_pred             eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence            566777789999999999999999999999999999999999888899999999999999999888764

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.03  E-value=2.1e-05  Score=56.29  Aligned_cols=64  Identities=22%  Similarity=0.349  Sum_probs=57.9

Q ss_pred             cCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           68 IPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        68 ~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      ..+|.... +.+.++.|+.++|+++.++.|++++.+.|+++|..+.+ ...+.+|++.+++++++.
T Consensus         4 ~~~~~~~~-~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~   67 (69)
T cd00196           4 LNDGKTVE-LLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPD-SLTLEDYGLQDGDELVLV   67 (69)
T ss_pred             ecCCCEEE-EEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCC-CCcHHHcCCCCCCEEEEE
Confidence            33677787 89999999999999999999999999999999999998 777789999999999974

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=1.5e-06  Score=62.13  Aligned_cols=69  Identities=19%  Similarity=0.218  Sum_probs=63.3

Q ss_pred             ceeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCceeEEecCeecCCCccccccCCCCCccccc
Q 036691          213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV  281 (426)
Q Consensus       213 ~~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l  281 (426)
                      +.+.++.+-|+...+...+++||.++|+.|..++|-.+++..|..+...+.|.-+|++|.|.+|..+.+
T Consensus         2 iev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel   70 (73)
T KOG3493|consen    2 IEVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL   70 (73)
T ss_pred             ceehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence            456778888999999999999999999999999999999999988889999999999999999987764

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.00011  Score=57.88  Aligned_cols=79  Identities=13%  Similarity=0.278  Sum_probs=73.8

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      ..+++.|+.-++.+..+.|..+.+...|+..-+++.|++....|++|+|+.+.+..|-.+.+.+.|+.|.++....||.
T Consensus        19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~   97 (99)
T KOG1769|consen   19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF   97 (99)
T ss_pred             ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence            4567888887788889999999999999999999999999999999999999999999999999999999999888885

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=1.7e-05  Score=74.56  Aligned_cols=70  Identities=20%  Similarity=0.449  Sum_probs=60.9

Q ss_pred             eeEEEEcC---CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           62 MKLFVKIP---TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        62 m~i~Vk~~---~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      |.++|++.   ....++ ++|+.+.+|.+||+-++.+.|+|+++.+++|+|++|.+ +.+++.+.+..-|.+|++
T Consensus         1 m~~lvqf~~~~~~h~l~-v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~-~ttv~~cDL~qqs~~hi~   73 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLP-VEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSN-DTTVQNCDLSQQSATHIM   73 (446)
T ss_pred             CeEEEEeCCccccCcee-EEEecCCCHHHHHHHHHHhhCCChhheEEEEecccccc-Cceeecccccccchhhhh
Confidence            44555553   344677 99999999999999999999999999999999999999 999999999888999875

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.56  E-value=0.0003  Score=51.85  Aligned_cols=63  Identities=14%  Similarity=0.148  Sum_probs=47.7

Q ss_pred             ecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEE
Q 036691          292 TWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       292 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l  354 (426)
                      ..+++.+++.+.|+.++.++-+..+.+.|+.+++..|.|+++.|+-+.++.-.|+.+|+.+.|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            457899999999999999999999999999999999999999999999999999999999875

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.00028  Score=70.39  Aligned_cols=74  Identities=23%  Similarity=0.346  Sum_probs=66.2

Q ss_pred             cEEEEEecCCcEEEEE-EcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691          286 FQIFVKTWGGKTITLD-VQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      ..+.|+ |.|+.+.++ ++.++|+..+|+++...+|+||+.|++...|+.+.|+-.+...+|++|.+++|+.....
T Consensus         4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~   78 (473)
T KOG1872|consen    4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEA   78 (473)
T ss_pred             ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccccc
Confidence            345565 578999988 99999999999999999999999999999999999999999999999999999875443

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00039  Score=69.45  Aligned_cols=72  Identities=17%  Similarity=0.223  Sum_probs=64.6

Q ss_pred             eeEEEEcCCCceeEEEE-EcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           62 MKLFVKIPTNQTATVVE-AMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      ..|.||. .|+.+. ++ ++.++|+..+|+++...+|+||++|++++.|..+.| +-.+...+|++|.+++|.-..
T Consensus         4 ~~v~VKW-~gk~y~-v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~d-d~~~~al~iKpn~~lmMmGt~   76 (473)
T KOG1872|consen    4 DTVIVKW-GGKKYP-VETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKD-DVDWGALQIKPNETLMMMGTA   76 (473)
T ss_pred             ceEeeee-cCcccc-ceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccc-cccccccccCCCCEEEeeccc
Confidence            3578888 788888 66 999999999999999999999999999999999999 778888999999999996653

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=97.31  E-value=0.0013  Score=57.13  Aligned_cols=77  Identities=22%  Similarity=0.312  Sum_probs=61.5

Q ss_pred             cEEEEEecCC----cEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEE-cCeec--CCCCccccCCCCCC----CEEE
Q 036691          286 FQIFVKTWGG----KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVF-AGKRL--FENHVLARYNIQKH----STLH  353 (426)
Q Consensus       286 m~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~-~gk~L--~d~~tL~~y~I~~~----~ti~  353 (426)
                      |+|+|.+++|    .++.+.+.++.||.+|+..|.+..++|...| .|.+ .++.|  .++..++.+.-.+.    -+++
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~   80 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR   80 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence            6899999999    6889999999999999999999999999985 4555 45566  45566676654443    4788


Q ss_pred             EEeecCCCc
Q 036691          354 MVLAPSSRI  362 (426)
Q Consensus       354 l~~~~~gg~  362 (426)
                      +.+++.||-
T Consensus        81 l~~rl~GGK   89 (162)
T PF13019_consen   81 LSLRLRGGK   89 (162)
T ss_pred             EEEeccCCC
Confidence            899999883

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=97.29  E-value=0.00097  Score=49.16  Aligned_cols=63  Identities=13%  Similarity=0.131  Sum_probs=47.9

Q ss_pred             cccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeee
Q 036691          146 AATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEM  208 (426)
Q Consensus       146 ~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l  208 (426)
                      .++++++++.+.++.++.++-+...+++|++++.+.|.++++.++-+.+++.-++.+|+.++|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            578999999999999999999999999999999999999999999999999999999999875

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.14  E-value=0.00063  Score=52.87  Aligned_cols=63  Identities=19%  Similarity=0.296  Sum_probs=51.7

Q ss_pred             eEEEcC-CCcEEEEeecccccHHHHHHHHHHHhCCCCCceeEEe-cC-eecCCCccccccCCCCCc
Q 036691          215 IFVRTP-IEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFY-AG-TKLEACKTLASYGIKNNY  277 (426)
Q Consensus       215 i~V~~~-~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g-~~L~d~~tL~~y~I~~~~  277 (426)
                      +|+... ...++.++.+++.||.+||.++.....-|++.|+|+. .. +.|+|.+||++.|..+..
T Consensus         3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~   68 (110)
T KOG4495|consen    3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQT   68 (110)
T ss_pred             eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccccccc
Confidence            444433 3445789999999999999999999999999999986 44 667999999999886543

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=97.07  E-value=0.0015  Score=50.83  Aligned_cols=58  Identities=24%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE-cC-eecCCCCccccCCC
Q 036691          288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF-AG-KRLFENHVLARYNI  346 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~g-k~L~d~~tL~~y~I  346 (426)
                      +.|+- ...++.+++.++.||-+||.+++....-|+++|+|+- .- ..|+|++||++||.
T Consensus         5 ~~VrR-~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf   64 (110)
T KOG4495|consen    5 LRVRR-HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF   64 (110)
T ss_pred             eeeee-cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence            44544 3456778999999999999999999999999999976 44 67899999999954

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.0049  Score=48.74  Aligned_cols=80  Identities=14%  Similarity=0.229  Sum_probs=70.5

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      +..+.+.|+.-+|.+.. +.|..+.+...|+..-.++.|++.+..|.+|.|+.+.. ..|-.+.+..+|+.|.++....|
T Consensus        18 ~~hi~LKV~gqd~~~~~-Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~-~~TP~~L~mEd~D~Iev~~~q~g   95 (99)
T KOG1769|consen   18 SEHINLKVKGQDGSVVV-FKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRE-THTPADLEMEDGDEIEVVQEQTG   95 (99)
T ss_pred             cceEEEEEecCCCCEEE-EEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCC-CCChhhhCCcCCcEEEEEeeccc
Confidence            34566777775677777 99999999999999999999999999999999999999 99999999999999999777666


Q ss_pred             ee
Q 036691          139 IL  140 (426)
Q Consensus       139 g~  140 (426)
                      |.
T Consensus        96 G~   97 (99)
T KOG1769|consen   96 GF   97 (99)
T ss_pred             CC
Confidence            53

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=96.83  E-value=0.0033  Score=48.41  Aligned_cols=68  Identities=18%  Similarity=0.241  Sum_probs=49.3

Q ss_pred             EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcc------eEEE-EcCeecCCCCccccCCCCCCCEEEE
Q 036691          287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHL------QSIV-FAGKRLFENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~------q~L~-~~gk~L~d~~tL~~y~I~~~~ti~l  354 (426)
                      .|.|...+|+.+.+.+..+.+|++|...+.+..+.+...      ..|. -+|..|.++.||+++||.+|+.++|
T Consensus         4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred             EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence            466666557899999999999999999999988764433      4555 6799999999999999999999986

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=96.78  E-value=0.011  Score=45.77  Aligned_cols=70  Identities=19%  Similarity=0.228  Sum_probs=60.3

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcc-eEEE--EcCeecCCC--CccccCCCCCCCEEEE
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHL-QSIV--FAGKRLFEN--HVLARYNIQKHSTLHM  354 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~L~--~~gk~L~d~--~tL~~y~I~~~~ti~l  354 (426)
                      ...|.|+.++|+.+.-.+.+++||.+|..-|......+... ..|+  |-.+.+.+.  .||.+.|+.++++|++
T Consensus         6 ~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    6 VVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             EEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             EEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence            45789999999999999999999999999999988777765 7775  567888654  6999999999999976

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=96.72  E-value=0.0073  Score=52.53  Aligned_cols=78  Identities=15%  Similarity=0.124  Sum_probs=59.0

Q ss_pred             eeEEEEcCCC----ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCce-EEEe-CCeEee-cccccccccccccC----cEE
Q 036691           62 MKLFVKIPTN----QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQF-TLVY-DGKLLK-EDTATMTSMNIKSE----SII  130 (426)
Q Consensus        62 m~i~Vk~~~g----~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q-~L~~-~g~~L~-d~~~tL~~y~I~~~----s~i  130 (426)
                      |+|+|++++|    .++. +.++++.||.+|+..|.+..++|+..| .|.+ .|+.|. +++..++.+.-.+.    -++
T Consensus         1 i~Vlvss~~g~~lp~tl~-~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l   79 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLS-LSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITL   79 (162)
T ss_pred             CeEEEecCCCCCCCCeEE-eeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEE
Confidence            6899999999    5888 999999999999999999999998885 4555 355552 22555666654433    367


Q ss_pred             EEEeecccee
Q 036691          131 HLVFCPKEIL  140 (426)
Q Consensus       131 ~l~~~~~~g~  140 (426)
                      ++..+++||.
T Consensus        80 ~l~~rl~GGK   89 (162)
T PF13019_consen   80 RLSLRLRGGK   89 (162)
T ss_pred             EEEEeccCCC
Confidence            8888888763

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.0031  Score=48.55  Aligned_cols=78  Identities=10%  Similarity=0.179  Sum_probs=71.0

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      .+.+.|...+|.++.+.+..+.+...|....+.+.|-..+..|++|+|+.++.++|-.+++.+.++.|..+....||+
T Consensus        24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~  101 (103)
T COG5227          24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA  101 (103)
T ss_pred             ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence            466777777889999999999999999999999999999999999999999999999999999999998887766764

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=96.53  E-value=0.01  Score=45.74  Aligned_cols=69  Identities=13%  Similarity=0.217  Sum_probs=49.5

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCC---C---ceEEE-eCCeEeecccccccccccccCcEEEE
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQS---D---QFTLV-YDGKLLKEDTATMTSMNIKSESIIHL  132 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~---~---~q~L~-~~g~~L~d~~~tL~~y~I~~~s~i~l  132 (426)
                      +.|.|....|+.+. +.++.+.+|+.|...+.+..+.+.   .   ...|. -.|..|++ +.+|++++|.+|+++++
T Consensus         3 ~rVtv~~~~~~~~D-l~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~-~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    3 CRVTVDAGNGRQVD-LALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDP-DQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEEE-TT--EEE-EEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEET-TSBCGGGT--TT-EEEE
T ss_pred             EEEEEEcCCCcEEE-EEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCC-cCcHhHcCCCCCCEEEe
Confidence            46677775578888 999999999999999999877632   2   23454 57889999 99999999999999986

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>COG5417 Uncharacterized small protein [Function unknown]

Probab=96.43  E-value=0.02  Score=42.55  Aligned_cols=67  Identities=15%  Similarity=0.282  Sum_probs=56.8

Q ss_pred             EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCC-----cceEEEEcCeecCCCCccccCCCCCCCEEEE
Q 036691          288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPL-----HLQSIVFAGKRLFENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-----~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l  354 (426)
                      +-.+.++|.++.+.++...++..+...+.+...+..     +..+..-+++.|.++..|.+|+|.+|+.+.+
T Consensus         9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417           9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            344677899999999999999999999988765432     3567888999999999999999999999865

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=96.34  E-value=0.031  Score=43.12  Aligned_cols=72  Identities=11%  Similarity=0.261  Sum_probs=61.3

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCc-eEEE--eCCeEeeccc-ccccccccccCcEEEE
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQ-FTLV--YDGKLLKEDT-ATMTSMNIKSESIIHL  132 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~-q~L~--~~g~~L~d~~-~tL~~y~I~~~s~i~l  132 (426)
                      +...|.||.++|+.+. -...+++||.+|..-|......+... -.|+  |-.+.+.+++ .||++.++.+++++++
T Consensus         5 ~~~~I~vRlpdG~~l~-~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    5 DVVRIQVRLPDGSRLQ-RRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             SEEEEEEEETTSTEEE-EEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             CEEEEEEECCCCCEEE-EEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence            4678899999999998 99999999999999999887766664 6775  6778887745 7999999999999886

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=96.05  E-value=0.035  Score=42.78  Aligned_cols=69  Identities=13%  Similarity=0.145  Sum_probs=57.7

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEE--EEcCeecCC---CCccccCCCCCCCEEEE
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI--VFAGKRLFE---NHVLARYNIQKHSTLHM  354 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L--~~~gk~L~d---~~tL~~y~I~~~~ti~l  354 (426)
                      -.|.||.++|+.+.-.+.+++||++|.+-|....+.+.....|  -|-.+.+.+   +.||.+.|+-++++|.+
T Consensus         5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            4688999999999999999999999999997767776667777  456677854   47999999999888855

Present in FAF1 and Shp1p.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.88  E-value=0.014  Score=52.39  Aligned_cols=66  Identities=21%  Similarity=0.211  Sum_probs=59.2

Q ss_pred             CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      +++.+.+.+...+|+.++|.++++..|+.+..|+++|+|+.|-|...|..|+|++|..-.+-..+.
T Consensus       155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqviVl  220 (231)
T KOG0013|consen  155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVIVL  220 (231)
T ss_pred             hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEEec
Confidence            567788899999999999999999999999999999999999999999999999997766654443

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=95.82  E-value=0.022  Score=45.60  Aligned_cols=58  Identities=17%  Similarity=0.231  Sum_probs=43.2

Q ss_pred             EEEEecCC-cEEEEEEc--CCCcHHHHHHHHHhHhC--CCCcceEEEEcCeecCCCCccccCC
Q 036691          288 IFVKTWGG-KTITLDVQ--PYNTVQDVKVKLFDKLQ--TPLHLQSIVFAGKRLFENHVLARYN  345 (426)
Q Consensus       288 i~v~~~~g-~~~~l~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~gk~L~d~~tL~~y~  345 (426)
                      |.|+..++ .-.++++.  ...||..||..|.+..+  ..-..+||+|+|+.|.|+..|+..-
T Consensus         3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l   65 (97)
T PF10302_consen    3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL   65 (97)
T ss_pred             EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence            34444432 33567777  78999999999999984  4445678899999999998877653

They contain a characteristic GFDRL sequence motif.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=95.77  E-value=0.021  Score=45.76  Aligned_cols=46  Identities=22%  Similarity=0.382  Sum_probs=36.7

Q ss_pred             eEEEEEc--CCCcHHHHHHHHHHHhC--CCCCceEEEeCCeEeecccccccc
Q 036691           74 ATVVEAM--PYHTVQNIKTMIQVKEG--IQSDQFTLVYDGKLLKEDTATMTS  121 (426)
Q Consensus        74 ~~~~~v~--~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~d~~~tL~~  121 (426)
                      .. ++++  .+.||..||.+|.+..+  ..-..+||+|+|+.|.| ...|+.
T Consensus        14 l~-L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d-~t~l~~   63 (97)
T PF10302_consen   14 LP-LDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLND-HTDLSS   63 (97)
T ss_pred             ce-eecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCc-cchhhh
Confidence            45 6676  78999999999999974  33456899999999999 666554

They contain a characteristic GFDRL sequence motif.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=95.65  E-value=0.078  Score=40.79  Aligned_cols=68  Identities=16%  Similarity=0.181  Sum_probs=54.6

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCC-CcceEEE--EcCeecCC-CCccccCCCCCCCEE
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTP-LHLQSIV--FAGKRLFE-NHVLARYNIQKHSTL  352 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip-~~~q~L~--~~gk~L~d-~~tL~~y~I~~~~ti  352 (426)
                      .-.|.|+..+|+.+.-.+..++||++|.+-|....+-+ .....|.  |-.+.|.| +.||.+.|+.+...+
T Consensus         4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~   75 (79)
T cd01770           4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV   75 (79)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence            44688999999999999999999999999999876432 3556674  66788855 789999999875444

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=95.62  E-value=0.1  Score=40.77  Aligned_cols=70  Identities=16%  Similarity=0.112  Sum_probs=58.6

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC--eecC--------CCCccccCCCCCCCEEE
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG--KRLF--------ENHVLARYNIQKHSTLH  353 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g--k~L~--------d~~tL~~y~I~~~~ti~  353 (426)
                      ....|.++.++|+.+.-.+..++||++|..-|.. .+-.++...|+.+-  +.+.        .+.||.+.|+.+..+|.
T Consensus         3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~   81 (85)
T cd01774           3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF   81 (85)
T ss_pred             ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence            3467899999999999999999999999999965 45566889998766  7886        36799999999988875


Q ss_pred             E
Q 036691          354 M  354 (426)
Q Consensus       354 l  354 (426)
                      +
T Consensus        82 V   82 (85)
T cd01774          82 V   82 (85)
T ss_pred             E
Confidence            4

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=95.57  E-value=0.073  Score=40.97  Aligned_cols=72  Identities=15%  Similarity=0.286  Sum_probs=58.7

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEeecc--cccccccccccCcEEEE
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLKED--TATMTSMNIKSESIIHL  132 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d~--~~tL~~y~I~~~s~i~l  132 (426)
                      +...|.||.++|+.+. -...+++|+.++.+-|....+.......|+  |-.+.+.++  +.||.+.++.+++++.+
T Consensus         3 ~~~~I~iRlPdG~ri~-~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        3 DQCRLQIRLPDGSRLV-RRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             CeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            3567889999999998 899999999999999976666666667775  667778653  47999999988888865

Present in FAF1 and Shp1p.

>COG5417 Uncharacterized small protein [Function unknown]

Probab=95.47  E-value=0.067  Score=39.85  Aligned_cols=68  Identities=15%  Similarity=0.235  Sum_probs=53.6

Q ss_pred             eeEE--EcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCc-----eeEEecCeecCCCccccccCCCCCccccc
Q 036691          214 QIFV--RTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGN-----QDLFYAGTKLEACKTLASYGIKNNYVLDV  281 (426)
Q Consensus       214 ~i~V--~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~-----q~L~~~g~~L~d~~tL~~y~I~~~~~l~l  281 (426)
                      .|+|  +.++|.++.+.++..-+|..+-..+++...++...     .+..-.++.|.++..|++|+|.+|+.+.+
T Consensus         6 kVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417           6 KVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             EEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            3444  45789999999999999999999998877655332     23334468889999999999999998764

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=95.39  E-value=0.094  Score=40.35  Aligned_cols=69  Identities=16%  Similarity=0.296  Sum_probs=55.9

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCC-CCCceEEE--eCCeEeecccccccccccccCcEE
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGI-QSDQFTLV--YDGKLLKEDTATMTSMNIKSESII  130 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gi-p~~~q~L~--~~g~~L~d~~~tL~~y~I~~~s~i  130 (426)
                      ...|-||.++|+.+. .....++||++|.+-|....+- ......|+  |-.+.|.|++.||.|.|+.+.+.+
T Consensus         4 ~t~iqiRlpdG~r~~-~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~   75 (79)
T cd01770           4 TTSIQIRLADGKRLV-QKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV   75 (79)
T ss_pred             eeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence            457889999999998 8999999999999999986542 23456665  778889887889999999875544

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=95.34  E-value=0.12  Score=39.43  Aligned_cols=66  Identities=12%  Similarity=0.150  Sum_probs=52.2

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecCC---CCccccCCCCCCCEE
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLFE---NHVLARYNIQKHSTL  352 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~d---~~tL~~y~I~~~~ti  352 (426)
                      -.|.|+.++|+.+.-.+.+++||++|.+-|.....- .....|+  |-.+.+.+   +.||.+.|+.+...+
T Consensus         3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~   73 (77)
T cd01767           3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF   73 (77)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence            468899999999999999999999999999876543 4556664  55677754   789999999954433

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=95.30  E-value=0.11  Score=40.02  Aligned_cols=68  Identities=13%  Similarity=0.148  Sum_probs=55.7

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEE--EEcCeecCC---CCccccCCCCCCCEEEE
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI--VFAGKRLFE---NHVLARYNIQKHSTLHM  354 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L--~~~gk~L~d---~~tL~~y~I~~~~ti~l  354 (426)
                      -.|.|+.++|..+.-.+..++|+++|.+-|....+-+ ....|  -|-.|.+.+   +.||.+.|+.+.++|.+
T Consensus         5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            4588999999999999999999999999999765543 44566  456688854   57999999999998865

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=94.32  E-value=0.3  Score=37.15  Aligned_cols=68  Identities=13%  Similarity=0.358  Sum_probs=52.5

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEeec--ccccccccccccCcEE
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLKE--DTATMTSMNIKSESII  130 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d--~~~tL~~y~I~~~s~i  130 (426)
                      ...|.||.++|+.+. -...+++||.+|.+-|.....- .....|+  |-.+.+.+  .+.||.+.|+.+...+
T Consensus         2 ~t~i~iRlpdG~~~~-~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~   73 (77)
T cd01767           2 TTKIQIRLPDGKRLE-QRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF   73 (77)
T ss_pred             cEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence            356889999999998 8999999999999999876433 4555665  56677754  5889999999854433

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=94.13  E-value=0.35  Score=36.87  Aligned_cols=69  Identities=20%  Similarity=0.226  Sum_probs=52.7

Q ss_pred             EEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEE----c--CeecCCCCccccCCCCCCCEEEEEeec
Q 036691          290 VKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVF----A--GKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       290 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~----~--gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      |+.++|...+++++++.|+.+|-+.|+++.|+...+. -|.+    +  ..-|+.+++|.++.........+.+|.
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frv   76 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRV   76 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEE
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEE
Confidence            5678999999999999999999999999999876554 4666    1  245688899999988744444444443

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.07  E-value=0.095  Score=47.17  Aligned_cols=61  Identities=21%  Similarity=0.327  Sum_probs=56.1

Q ss_pred             CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEE
Q 036691           70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHL  132 (426)
Q Consensus        70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l  132 (426)
                      +++.+. +.+..-+||.++|.+++..+|+.+..|+++|.|+.|-| ...|..++|.+|+...+
T Consensus       155 T~~d~~-lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~d-kt~LeEc~iekg~rYvl  215 (231)
T KOG0013|consen  155 TREDFW-LTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVD-KTDLEECKIEKGQRYVL  215 (231)
T ss_pred             hhhhee-ecccCcCcHHHHHHHHHHhhccchhhheeeccCCceec-cccceeeeecCCCEEEE
Confidence            567777 88889999999999999999999999999999999999 99999999999977665

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=93.97  E-value=0.43  Score=44.06  Aligned_cols=101  Identities=21%  Similarity=0.156  Sum_probs=58.3

Q ss_pred             EEEEeecccccHHHHHHHHHHHhCCCCC---ceeEE--ecC---eecCCCccccccCCCCCccccc---------CC---
Q 036691          224 IVRLEVEVLIVVRDVKEIVANIIDLSLG---NQDLF--YAG---TKLEACKTLASYGIKNNYVLDV---------LP---  283 (426)
Q Consensus       224 ~~~l~v~~~~tV~~lK~~I~~~~~ip~~---~q~L~--~~g---~~L~d~~tL~~y~I~~~~~l~l---------~~---  283 (426)
                      .+.+-|+.+.||.+|-+.+..+.+++.+   ..++.  +++   +.+..+.++...  .+...+++         ..   
T Consensus        35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~~  112 (213)
T PF14533_consen   35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDES  112 (213)
T ss_dssp             EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT-
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhccccc
Confidence            4678889999999999999999999765   34442  344   446777777664  22223333         11   


Q ss_pred             -CCcEEEEEec-------CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce
Q 036691          284 -SPFQIFVKTW-------GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ  326 (426)
Q Consensus       284 -~~m~i~v~~~-------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q  326 (426)
                       ..+.|.|--.       -|-.|.+.|.|++|..++|++|++++|+|-...
T Consensus       113 ~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF  163 (213)
T PF14533_consen  113 EGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEF  163 (213)
T ss_dssp             -TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHH
T ss_pred             ccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhh
Confidence             1244554333       256788999999999999999999999987654

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=93.97  E-value=0.4  Score=37.08  Aligned_cols=69  Identities=10%  Similarity=0.129  Sum_probs=58.8

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecC---CCCccccCCCCCCCEEEEE
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLF---ENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~---d~~tL~~y~I~~~~ti~l~  355 (426)
                      -.|.|+.++|+...-.+..++++.+|..-+.. .|.+++...|+  |--|.+.   .+.||.+.|+.+..+|.+-
T Consensus         6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq   79 (82)
T cd01773           6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ   79 (82)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence            46899999999999999999999999999998 68888999885  4556663   3579999999999998663

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=93.62  E-value=0.47  Score=36.38  Aligned_cols=70  Identities=11%  Similarity=0.312  Sum_probs=55.8

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEeec--ccccccccccccCcEEEE
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLKE--DTATMTSMNIKSESIIHL  132 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d--~~~tL~~y~I~~~s~i~l  132 (426)
                      ...|.||.++|+.+. -..+.++|+.++.+-|....+-+ ..-.|+  |-.+.+.+  .+.||.+.|+.+.+++.+
T Consensus         4 ~~~i~iRlp~G~~~~-~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           4 ETRIQIRLLDGTTLK-QTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEEECCCCCEEE-EEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            457889999999998 88999999999999998765432 445665  67788864  257999999999998876

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=93.59  E-value=0.11  Score=48.02  Aligned_cols=69  Identities=13%  Similarity=0.184  Sum_probs=51.0

Q ss_pred             ceeEEEcCCCc-EEE-EeecccccHHHHHHHHH-HHhCCCCCceeEEe----cCeecCCCccccccCCCCCccccc
Q 036691          213 IQIFVRTPIEE-IVR-LEVEVLIVVRDVKEIVA-NIIDLSLGNQDLFY----AGTKLEACKTLASYGIKNNYVLDV  281 (426)
Q Consensus       213 ~~i~V~~~~g~-~~~-l~v~~~~tV~~lK~~I~-~~~~ip~~~q~L~~----~g~~L~d~~tL~~y~I~~~~~l~l  281 (426)
                      |.|++..+++. ... ...+.+.|+.|+++++. +...+.+..+++.+    .|+.|.|+.+|++|+..++.++.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            56777666653 333 55677889999996654 55677775555433    389999999999999999988887

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=93.57  E-value=0.51  Score=36.36  Aligned_cols=69  Identities=16%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecC---CCCccccCCCCCCCEEEE
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLF---ENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~---d~~tL~~y~I~~~~ti~l  354 (426)
                      ...|.|+.++|....-.+..++++++|..-+..+ |.++...+|+  |--+.+.   .+.||.+.|+.+..+|.+
T Consensus         4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V   77 (80)
T cd01771           4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL   77 (80)
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence            4578899999999999999999999999999875 7788888884  6667774   356999999999988865

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PRK06437 hypothetical protein; Provisional

Probab=93.36  E-value=0.66  Score=34.38  Aligned_cols=59  Identities=17%  Similarity=0.204  Sum_probs=48.1

Q ss_pred             CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      .++..++++....||.+|-+.    .|+++....+..+|..+.     .++-+++|+.|.++..+.||
T Consensus         9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG   67 (67)
T PRK06437          9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG   67 (67)
T ss_pred             CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence            456677888888899988754    588988888999999997     66678899999988777665

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=93.26  E-value=0.17  Score=46.74  Aligned_cols=69  Identities=20%  Similarity=0.224  Sum_probs=50.9

Q ss_pred             cEEEEEecCC-cEEE-EEEcCCCcHHHHHHHHHhH-hCCCCcceEE----EEcCeecCCCCccccCCCCCCCEEEE
Q 036691          286 FQIFVKTWGG-KTIT-LDVQPYNTVQDVKVKLFDK-LQTPLHLQSI----VFAGKRLFENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       286 m~i~v~~~~g-~~~~-l~v~~~~tV~~lK~~i~~~-~gip~~~q~L----~~~gk~L~d~~tL~~y~I~~~~ti~l  354 (426)
                      |.|++...++ ...+ .+.+...|+.|+++.+..+ ..+-+..+|+    --+|+.|-|+.+|++|+..+++++.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            5667766554 2333 6777889999999766654 5666654543    45899999999999999999987754

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=93.15  E-value=0.74  Score=35.92  Aligned_cols=71  Identities=11%  Similarity=0.275  Sum_probs=56.9

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeC--CeEee-------cccccccccccccCcEE
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYD--GKLLK-------EDTATMTSMNIKSESII  130 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~~L~-------d~~~tL~~y~I~~~s~i  130 (426)
                      +..+|-||.++|+.+. -....++||++|..-|.. .+..+....|+.+  -+.+.       |.+.||.+-|+.+.+++
T Consensus         3 ~~~~I~iRlp~G~Rl~-rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L   80 (85)
T cd01774           3 DTVKIVFKLPNGTRVE-RRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL   80 (85)
T ss_pred             ceEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence            4678899999999988 888899999999999964 4556678888754  37775       33679999999988877


Q ss_pred             EE
Q 036691          131 HL  132 (426)
Q Consensus       131 ~l  132 (426)
                      .+
T Consensus        81 ~V   82 (85)
T cd01774          81 FV   82 (85)
T ss_pred             EE
Confidence            65

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=92.99  E-value=0.32  Score=46.08  Aligned_cols=104  Identities=12%  Similarity=0.110  Sum_probs=72.7

Q ss_pred             EEeecccccHHHHHHHHHHHhCCCCCceeEEec----C--eecCCCccccccCCCCCccccc---CC-------------
Q 036691          226 RLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYA----G--TKLEACKTLASYGIKNNYVLDV---LP-------------  283 (426)
Q Consensus       226 ~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~----g--~~L~d~~tL~~y~I~~~~~l~l---~~-------------  283 (426)
                      .+-|+.+++|+++-..|.+..|+|++..-+.|.    +  ..++...|++...+.+|+.|..   .+             
T Consensus        88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~  167 (249)
T PF12436_consen   88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVK  167 (249)
T ss_dssp             EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHH
T ss_pred             EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHH
Confidence            466788999999999999999999887766665    2  5578999999999999999887   11             


Q ss_pred             -------CCcEEEEEec---CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE
Q 036691          284 -------SPFQIFVKTW---GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV  329 (426)
Q Consensus       284 -------~~m~i~v~~~---~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~  329 (426)
                             ..+.|.++..   .+..|++.++...|-.+|-++|+++.|++|+..||.
T Consensus       168 ~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~  223 (249)
T PF12436_consen  168 EYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF  223 (249)
T ss_dssp             HHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred             HHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence                   1355555542   345899999999999999999999999999988884

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=92.84  E-value=0.26  Score=44.35  Aligned_cols=59  Identities=19%  Similarity=0.180  Sum_probs=50.1

Q ss_pred             EEEEEcCCCcHHHHHHHHHhHhCCCCcceEE-EEcC-----eecC-CCCccccCCCCCCCEEEEEe
Q 036691          298 ITLDVQPYNTVQDVKVKLFDKLQTPLHLQSI-VFAG-----KRLF-ENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       298 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L-~~~g-----k~L~-d~~tL~~y~I~~~~ti~l~~  356 (426)
                      ..-+.+++.||+++|.+++-.+|.+++.+.| +|.|     ..|. ++..|..|+..+|..||++=
T Consensus        15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD   80 (234)
T KOG3206|consen   15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID   80 (234)
T ss_pred             hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence            3456679999999999999999999999999 6766     4554 47799999999999999864

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=92.83  E-value=0.2  Score=38.27  Aligned_cols=57  Identities=32%  Similarity=0.367  Sum_probs=48.8

Q ss_pred             EcCCCcHHHHHHHHHhHhC-CCCcceEEEEcCeecCCCCccccCC-CCCCCEEEEEeec
Q 036691          302 VQPYNTVQDVKVKLFDKLQ-TPLHLQSIVFAGKRLFENHVLARYN-IQKHSTLHMVLAP  358 (426)
Q Consensus       302 v~~~~tV~~lK~~i~~~~g-ip~~~q~L~~~gk~L~d~~tL~~y~-I~~~~ti~l~~~~  358 (426)
                      |+++++|.+++..+..... .......|.++|+.|++...|++.. +++|+++.|+...
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p   59 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP   59 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence            5789999999999988754 6677889999999999999998884 8889999998653

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=92.58  E-value=1.4  Score=40.58  Aligned_cols=101  Identities=17%  Similarity=0.066  Sum_probs=56.8

Q ss_pred             cEEEEeccCCCcHHHHHHHHhhhhCCCCC-cEEE--E--ECCee---ccCCCCcccccCCCcceeeec---------c--
Q 036691          150 EIVNLEVKHSFAIRDVKAIVGSVVGVSAA-DHIM--I--YEGKK---LEDSKTLAFYDMKDECLLEMF---------P--  210 (426)
Q Consensus       150 k~~~i~v~~~~tV~~lK~~I~~~~gip~~-~q~L--~--~~g~~---L~d~~tL~~y~I~~~s~i~l~---------~--  210 (426)
                      +.+.+.+....||.+|...++++.+++.+ ...|  .  ++++.   +..+.++...  .+..++++-         .  
T Consensus        34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~  111 (213)
T PF14533_consen   34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE  111 (213)
T ss_dssp             -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence            56888999999999999999999998776 2333  2  35554   5666666655  222233221         1  


Q ss_pred             --CcceeEEEc-------CCCcEEEEeecccccHHHHHHHHHHHhCCCCCc
Q 036691          211 --SSIQIFVRT-------PIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGN  252 (426)
Q Consensus       211 --~~~~i~V~~-------~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~  252 (426)
                        +.+-|.|--       .-|-.+.+.|.+++|..++|++|++++|+|...
T Consensus       112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ke  162 (213)
T PF14533_consen  112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKE  162 (213)
T ss_dssp             --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHH
T ss_pred             cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhh
Confidence              113344422       227778999999999999999999999998544

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=92.45  E-value=0.4  Score=43.17  Aligned_cols=58  Identities=19%  Similarity=0.323  Sum_probs=49.7

Q ss_pred             EEEcCCCcHHHHHHHHHHHhCCCCCceEEE-eCC-----eEeecccccccccccccCcEEEEEe
Q 036691           77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLV-YDG-----KLLKEDTATMTSMNIKSESIIHLVF  134 (426)
Q Consensus        77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g-----~~L~d~~~tL~~y~I~~~s~i~l~~  134 (426)
                      ...+++.||++||.+++-..|.+++...|. |.|     -.|+|++..|..|...+|-.||++-
T Consensus        17 kr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD   80 (234)
T KOG3206|consen   17 KRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID   80 (234)
T ss_pred             hhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence            566789999999999999999999999984 655     3677768899999999999999843

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=92.44  E-value=0.92  Score=34.93  Aligned_cols=70  Identities=17%  Similarity=0.279  Sum_probs=58.1

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee--cccccccccccccCcEEEE
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK--EDTATMTSMNIKSESIIHL  132 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~~tL~~y~I~~~s~i~l  132 (426)
                      ..+|-||.++|.... -....++++.+|-.-|... |.++...+|+  |=.+.+.  |.+.||.+.|+....++.+
T Consensus         4 ~~~i~iRlP~G~r~~-rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~V   77 (80)
T cd01771           4 ISKLRVRTPSGDFLE-RRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLIL   77 (80)
T ss_pred             eEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEE
Confidence            457888999999988 8899999999999999874 7888888886  6677774  4367999999998888765

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=92.07  E-value=0.23  Score=38.44  Aligned_cols=77  Identities=13%  Similarity=0.149  Sum_probs=64.5

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      .+.+.|-.-+|.++. +.|..+.|...|...-..+.|-..+..|++|.|+..+- +.|-.|++..+++.|..+..--||
T Consensus        24 hinLkvv~qd~telf-FkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~-dqTP~dldmEdnd~iEav~eQvGG  100 (103)
T COG5227          24 HINLKVVDQDGTELF-FKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDL-DQTPGDLDMEDNDEIEAVTEQVGG  100 (103)
T ss_pred             ccceEEecCCCCEEE-EEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCC-CCChhhcCCccchHHHHHHHHhcC
Confidence            445555555778887 99999999999999999999999999999999999988 999999999999988765443444

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=91.67  E-value=0.95  Score=34.38  Aligned_cols=60  Identities=13%  Similarity=0.087  Sum_probs=47.1

Q ss_pred             EEEEEEcCCCcHHHHHHHHHhHhCC----CCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          297 TITLDVQPYNTVQDVKVKLFDKLQT----PLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       297 ~~~l~v~~~~tV~~lK~~i~~~~gi----p~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ...+++....||.+|.+.+..+.+-    ......+..+|+...     .++-+++|+.|.++..+.||
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG   80 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence            4567777789999999999987642    334556777888887     45679999999999888776

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=91.63  E-value=1.4  Score=34.08  Aligned_cols=72  Identities=11%  Similarity=0.304  Sum_probs=59.7

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee--cccccccccccccCcEEEEE
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK--EDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~~tL~~y~I~~~s~i~l~  133 (426)
                      ..-+|.||.++|+... -....++++.+|-.-+.. .|.+++...|+  |-.+.+.  |.+.||.+.|+.+..++.+.
T Consensus         4 ~~t~i~vRlP~G~r~~-rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq   79 (82)
T cd01773           4 PKARLMLRYPDGKREQ-IALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ   79 (82)
T ss_pred             CeeEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEe
Confidence            3457889999999998 888999999999999988 57888988887  6666663  32679999999999988764

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=91.51  E-value=1.3  Score=32.42  Aligned_cols=65  Identities=12%  Similarity=0.244  Sum_probs=46.9

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |+|.+   +|+.+.+  + ..|+.+|.+.+    ++++....+-.++..+. .....+.-+++||.|.++..+.||
T Consensus         1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG   65 (65)
T PRK06488          1 MKLFV---NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG   65 (65)
T ss_pred             CEEEE---CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence            44544   6777776  3 35888888765    67766666788888776 335667789999999998877776

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=91.32  E-value=0.7  Score=35.59  Aligned_cols=63  Identities=13%  Similarity=0.084  Sum_probs=46.5

Q ss_pred             EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          297 TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       297 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      .+...++-..++..||..++.+.|+..+...+......|+++++|.+-+++-..++.+.+...
T Consensus         4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi~   66 (88)
T PF11620_consen    4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQIK   66 (88)
T ss_dssp             EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEEE
T ss_pred             eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEEE
Confidence            455667778899999999999999999999999999889999999999999999999987654

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length

Probab=90.95  E-value=1.5  Score=41.60  Aligned_cols=124  Identities=17%  Similarity=0.238  Sum_probs=80.4

Q ss_pred             CceeEEEEcCC--Ccee---EEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC------eEeecccccccccccccCc
Q 036691           60 SEMKLFVKIPT--NQTA---TVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG------KLLKEDTATMTSMNIKSES  128 (426)
Q Consensus        60 ~~m~i~Vk~~~--g~~~---~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g------~~L~d~~~tL~~y~I~~~s  128 (426)
                      +.+-||+|..+  .+++   ..+.|+.+++|.++-..|.++-|+|++...++|.-      ..++. ..++....+++|+
T Consensus        67 ~~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~-~~t~~~~el~~Gd  145 (249)
T PF12436_consen   67 DDILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDP-NQTFEKAELQDGD  145 (249)
T ss_dssp             TEEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--S-SSBHHHTT--TTE
T ss_pred             CcEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCC-CCchhhcccCCCC
Confidence            45667777642  2222   12578899999999999999999999988888753      24544 8999999999999


Q ss_pred             EEEEEeeccc--------------------eeeeEee---cccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEE
Q 036691          129 IIHLVFCPKE--------------------ILSIFVK---AATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIY  184 (426)
Q Consensus       129 ~i~l~~~~~~--------------------g~~i~Vk---~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~  184 (426)
                      .|-.......                    -+.+.+.   ...+..+.+++....|-.+|-+.|.++.|++|+.-+|.-
T Consensus       146 Ii~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~  224 (249)
T PF12436_consen  146 IICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT  224 (249)
T ss_dssp             EEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred             EEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence            9987664321                    1233332   345679999999999999999999999999999887775

It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=90.85  E-value=0.81  Score=35.71  Aligned_cols=43  Identities=12%  Similarity=0.278  Sum_probs=37.2

Q ss_pred             EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc---ceEEEE
Q 036691          288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLH---LQSIVF  330 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~---~q~L~~  330 (426)
                      +.++++.|+++.+.+.|+..+.+|++.|..+.|+...   ...|.|
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY   48 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence            5678899999999999999999999999999999874   455544

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=90.53  E-value=0.93  Score=34.15  Aligned_cols=46  Identities=22%  Similarity=0.154  Sum_probs=41.4

Q ss_pred             EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCe
Q 036691          288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGK  333 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk  333 (426)
                      +.|..++|+...+.+.|+.|+.++-+++.++.|+.++...+++.|.
T Consensus         2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~   47 (72)
T cd01760           2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGL   47 (72)
T ss_pred             EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence            4577889999999999999999999999999999999998877653

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=90.38  E-value=2.6  Score=31.40  Aligned_cols=56  Identities=9%  Similarity=0.022  Sum_probs=44.6

Q ss_pred             EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          297 TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       297 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ...+++.+..||.+|-+.+    ++++..-.+..+|..+.     .++-+++|+.|.++..+.||
T Consensus        15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~V~GG   70 (70)
T PRK08364         15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPVVSGG   70 (70)
T ss_pred             ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEccccCC
Confidence            5678888888999888665    77777777888999884     36678999999988777665

>smart00455 RBD Raf-like Ras-binding domain

Probab=90.00  E-value=1.2  Score=33.44  Aligned_cols=45  Identities=20%  Similarity=0.157  Sum_probs=40.9

Q ss_pred             EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC
Q 036691          288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG  332 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g  332 (426)
                      +.|..++|+...+.+.|+.|+.++-+.+.++.|+.++...+++.|
T Consensus         2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g   46 (70)
T smart00455        2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG   46 (70)
T ss_pred             eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            356678999999999999999999999999999999999998855

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=89.60  E-value=2.1  Score=32.89  Aligned_cols=71  Identities=15%  Similarity=0.158  Sum_probs=48.5

Q ss_pred             cEEEEEec------CC-cEEEEEEcCCCcHHHHHHHHHhHhC-CCC--cceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691          286 FQIFVKTW------GG-KTITLDVQPYNTVQDVKVKLFDKLQ-TPL--HLQSIVFAGKRLFENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       286 m~i~v~~~------~g-~~~~l~v~~~~tV~~lK~~i~~~~g-ip~--~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~  355 (426)
                      |.|.|+.+      .| ...++++....||++|.+.+..+.. +..  ..-.+..+|+...     .++-+++|++|.++
T Consensus         2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~   76 (82)
T PLN02799          2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII   76 (82)
T ss_pred             eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence            56666665      24 4567788888999999999977651 111  1123566777654     44567899999998


Q ss_pred             eecCCC
Q 036691          356 LAPSSR  361 (426)
Q Consensus       356 ~~~~gg  361 (426)
                      ....||
T Consensus        77 PpvsGG   82 (82)
T PLN02799         77 PPISGG   82 (82)
T ss_pred             CCCCCC
Confidence            877776

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=88.98  E-value=3  Score=32.60  Aligned_cols=65  Identities=12%  Similarity=0.118  Sum_probs=44.8

Q ss_pred             eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--e--CCe-EeecccccccccccccCcEEEEEeeccce
Q 036691           73 TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--Y--DGK-LLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        73 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~--~g~-~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      .++ ...+..|||+.+...+.+...+ ..+-||-  |  ++. .|.+++.|+.|.++..|.+|.+-.|-.+|
T Consensus        15 ~~t-~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG   84 (88)
T PF14836_consen   15 VLT-KQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG   84 (88)
T ss_dssp             EEE-EEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred             HhH-hhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence            455 7778999999999999999999 6667773  2  232 57675789999999999999887776665

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=88.71  E-value=3.1  Score=32.12  Aligned_cols=57  Identities=11%  Similarity=0.241  Sum_probs=41.7

Q ss_pred             EEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691           77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF  134 (426)
Q Consensus        77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~  134 (426)
                      ..++-..++..||..++.+.|+..+.-.+...+..|+. +++|.+-|++-..++.+.+
T Consensus         7 q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~-~k~L~dQcVqgeGlVQlnv   63 (88)
T PF11620_consen    7 QHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEP-HKSLVDQCVQGEGLVQLNV   63 (88)
T ss_dssp             EEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--T-TSBTTTSS----SEEEEEE
T ss_pred             EEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecC-CccHHHhhccccCEEEEEE
Confidence            56777889999999999999999999999999988998 9999999999888888743

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=88.18  E-value=3.1  Score=31.50  Aligned_cols=58  Identities=21%  Similarity=0.160  Sum_probs=47.3

Q ss_pred             eecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCC-cEEEEE----C--CeeccCCCCcccccCC
Q 036691          144 VKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAA-DHIMIY----E--GKKLEDSKTLAFYDMK  201 (426)
Q Consensus       144 Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~----~--g~~L~d~~tL~~y~I~  201 (426)
                      |..++|...+++++++.|+.++-+.|.++.|+... ..-|.+    +  ..+|+.+++|.++...
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~   65 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK   65 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence            45678999999999999999999999999998764 467777    2  2458888999888776

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=88.13  E-value=1.7  Score=33.32  Aligned_cols=44  Identities=16%  Similarity=0.226  Sum_probs=37.5

Q ss_pred             EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe
Q 036691           64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK  110 (426)
Q Consensus        64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~  110 (426)
                      |.|++ .+ ++. +.|+++.+..+|.++|.++.++|++...|.|...
T Consensus         5 vKV~f-~~-tIa-Irvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde   48 (80)
T cd06406           5 VKVHF-KY-TVA-IQVARGLSYATLLQKISSKLELPAEHITLSYKSE   48 (80)
T ss_pred             EEEEE-EE-EEE-EEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence            34444 23 899 9999999999999999999999999999999655

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=87.37  E-value=1.6  Score=34.04  Aligned_cols=43  Identities=12%  Similarity=0.288  Sum_probs=37.8

Q ss_pred             eEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCC---CcEEEEE
Q 036691          142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSA---ADHIMIY  184 (426)
Q Consensus       142 i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~---~~q~L~~  184 (426)
                      +..+++.|+.+.+.+.++..+.+|++.|.+++|+..   ....|.|
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY   48 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence            456789999999999999999999999999999887   4666666

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=86.55  E-value=2.8  Score=32.17  Aligned_cols=44  Identities=16%  Similarity=0.166  Sum_probs=37.1

Q ss_pred             EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCe
Q 036691          288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGK  333 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk  333 (426)
                      |.|+.- + ++.+.+.++-+..+|.++|.++.++|+++..|.|.-.
T Consensus         5 vKV~f~-~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde   48 (80)
T cd06406           5 VKVHFK-Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE   48 (80)
T ss_pred             EEEEEE-E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence            444442 3 8999999999999999999999999999999988653

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>KOG4261 consensus Talin [Cytoskeleton]

Probab=85.43  E-value=1.6  Score=46.65  Aligned_cols=99  Identities=18%  Similarity=0.227  Sum_probs=82.4

Q ss_pred             EEEEeccCCCcHHHHHHHHhhhhC---CCCCcEEEEE------CCeeccCCCCcccccCCCcceeeeccCcceeEEEcCC
Q 036691          151 IVNLEVKHSFAIRDVKAIVGSVVG---VSAADHIMIY------EGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPI  221 (426)
Q Consensus       151 ~~~i~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~------~g~~L~d~~tL~~y~I~~~s~i~l~~~~~~i~V~~~~  221 (426)
                      .-++..+++.+|-|-=+.|.+++.   .-+..+-|+.      .|.+|+.++++.+|...+++++.-.+.+-...|.++.
T Consensus        14 ~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r~lkvrmld   93 (1003)
T KOG4261|consen   14 VKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQRPLKVRMLD   93 (1003)
T ss_pred             eeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcccceeeecc
Confidence            336778899999988888877764   2244554543      5788999999999999999999998777778889999


Q ss_pred             CcEEEEeecccccHHHHHHHHHHHhCCC
Q 036691          222 EEIVRLEVEVLIVVRDVKEIVANIIDLS  249 (426)
Q Consensus       222 g~~~~l~v~~~~tV~~lK~~I~~~~~ip  249 (426)
                      |...++.|..+.+|+.|=--|..+.||.
T Consensus        94 g~vkti~vd~sq~v~~L~~~ic~~igIt  121 (1003)
T KOG4261|consen   94 GAVKTIMVDDSQPVSQLMMTICNKIGIT  121 (1003)
T ss_pred             cccceeeecccccHHHHHHHHHhccCcc
Confidence            9999999999999999999998888876

>PRK06437 hypothetical protein; Provisional

Probab=85.39  E-value=6.6  Score=28.99  Aligned_cols=58  Identities=19%  Similarity=0.253  Sum_probs=44.3

Q ss_pred             CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      .++.-. ++++.+.||.+|-++    .|++++.--+..+|+.+..      ++-+++|+.+.++.-..|
T Consensus         9 g~~~~~-~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~~------~~~L~dgD~Veiv~~V~G   66 (67)
T PRK06437          9 GHINKT-IEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVLE------DHNVKKEDDVLILEVFSG   66 (67)
T ss_pred             CCcceE-EEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCC------ceEcCCCCEEEEEecccC
Confidence            556566 888888899988765    5888888888899998864      667888999998443333

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=85.36  E-value=6  Score=30.13  Aligned_cols=60  Identities=12%  Similarity=0.067  Sum_probs=44.6

Q ss_pred             EEEEEEcCC-CcHHHHHHHHHhHhC-C-C-CcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          297 TITLDVQPY-NTVQDVKVKLFDKLQ-T-P-LHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       297 ~~~l~v~~~-~tV~~lK~~i~~~~g-i-p-~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ...+++.++ .||.+|.+.+.++.+ + . .....+..+|+...+     +.-+++|+.|.++....||
T Consensus        17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG   80 (80)
T TIGR01682        17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG   80 (80)
T ss_pred             eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence            356788866 899999999998864 1 1 123456677777664     5688999999998888776

The C-terminal Gly-Gly of this model is critical to function.

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=85.33  E-value=2.6  Score=31.71  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=40.3

Q ss_pred             EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe
Q 036691           64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK  110 (426)
Q Consensus        64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~  110 (426)
                      +.|..++|+... +.+.|++|+.++-+++.++.|+.++.-.+.+.|.
T Consensus         2 ~~V~LPng~~t~-V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~   47 (72)
T cd01760           2 CRVYLPNGQRTV-VPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGL   47 (72)
T ss_pred             EEEECcCCCeEE-EEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence            456778999988 9999999999999999999999999988876643

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=84.46  E-value=5  Score=29.37  Aligned_cols=60  Identities=15%  Similarity=0.108  Sum_probs=43.6

Q ss_pred             CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      +|+.+.+  .+..|+.+|-+.    .++|+....+..++..+..+. ...+ +++||.|.++-.+.||
T Consensus         6 NG~~~~~--~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG   65 (65)
T PRK05863          6 NEEQVEV--DEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG   65 (65)
T ss_pred             CCEEEEc--CCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence            5665555  466787777553    588999999999999775432 2245 9999999998776665

>smart00295 B41 Band 4

Probab=84.31  E-value=8.9  Score=34.46  Aligned_cols=75  Identities=17%  Similarity=0.170  Sum_probs=54.3

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEEc---C---eecCCCCccccCCCC-CCCEEEEE
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVFA---G---KRLFENHVLARYNIQ-KHSTLHMV  355 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~~---g---k~L~d~~tL~~y~I~-~~~ti~l~  355 (426)
                      .++.+.|..++|.+..+.+++++|++++...++.+.|++.... -|.+-   +   ..|+..+++.+.... ....+++.
T Consensus         2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr   81 (207)
T smart00295        2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR   81 (207)
T ss_pred             CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence            4567889999999999999999999999999999999965322 33331   1   346667777777665 34455554


Q ss_pred             eec
Q 036691          356 LAP  358 (426)
Q Consensus       356 ~~~  358 (426)
                      .|.
T Consensus        82 ~r~   84 (207)
T smart00295       82 VKF   84 (207)
T ss_pred             EEE
Confidence            443

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.

>smart00455 RBD Raf-like Ras-binding domain

Probab=84.09  E-value=3.6  Score=30.72  Aligned_cols=44  Identities=25%  Similarity=0.355  Sum_probs=39.9

Q ss_pred             EEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC
Q 036691           65 FVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG  109 (426)
Q Consensus        65 ~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g  109 (426)
                      .|-.++|+... +.+.|+.|+.++=+.+-++.|+.++.-.+...|
T Consensus         3 ~v~LP~~~~~~-V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g   46 (70)
T smart00455        3 KVHLPDNQRTV-VKVRPGKTVRDALAKALKKRGLNPECCVVRLRG   46 (70)
T ss_pred             EEECCCCCEEE-EEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            45677899999 999999999999999999999999999988855

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=83.90  E-value=1.7  Score=33.09  Aligned_cols=54  Identities=22%  Similarity=0.421  Sum_probs=42.7

Q ss_pred             ccCCCcHHHHHHHHhhhhC-CCCCcEEEEECCeeccCCCCccccc-CCCcceeeec
Q 036691          156 VKHSFAIRDVKAIVGSVVG-VSAADHIMIYEGKKLEDSKTLAFYD-MKDECLLEMF  209 (426)
Q Consensus       156 v~~~~tV~~lK~~I~~~~g-ip~~~q~L~~~g~~L~d~~tL~~y~-I~~~s~i~l~  209 (426)
                      |.+.++|.+++..+..... -....+.|.++|..|++...+++.. +.+|+++.++
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lv   56 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELV   56 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEE
Confidence            4678999999999988766 3446789999999999888887776 6666666665

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=83.76  E-value=10  Score=27.79  Aligned_cols=66  Identities=11%  Similarity=0.100  Sum_probs=45.7

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |+|+|   +|+.+++  ....|+.+|.+.    .+++.....+-.++..+.. ....++-+++||.|.++..+.||
T Consensus         1 m~i~v---Ng~~~~~--~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~GG   66 (66)
T PRK08053          1 MQILF---NDQPMQC--AAGQTVHELLEQ----LNQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIAGG   66 (66)
T ss_pred             CEEEE---CCeEEEc--CCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEccCC
Confidence            45554   5565554  566789888765    4556666777888888742 23555668999999998877766

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=83.67  E-value=4.4  Score=30.31  Aligned_cols=63  Identities=11%  Similarity=0.088  Sum_probs=51.3

Q ss_pred             EEEEEEcCCCcHHHHHHHHHhHhCC--CCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          297 TITLDVQPYNTVQDVKVKLFDKLQT--PLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       297 ~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ...+.+....||.+|.+.+..+.+-  ......+..+|+...+  ...+.-+++|+.|.++..+.||
T Consensus        13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG   77 (77)
T PF02597_consen   13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG   77 (77)
T ss_dssp             EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred             CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence            5678888999999999999887631  2366778889999888  4677788999999998888776

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=83.33  E-value=9.8  Score=29.79  Aligned_cols=65  Identities=6%  Similarity=-0.020  Sum_probs=44.6

Q ss_pred             cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE----cC-eec-CCCCccccCCCCCCCEEEEEeecCCC
Q 036691          296 KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF----AG-KRL-FENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       296 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~----~g-k~L-~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ..++-.++..|||+.+...+.+.+.| ...-||--    ++ ..| +.+.|+.+.||..|-+|-+=.|-..|
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG   84 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG   84 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence            46778889999999999999999999 66678832    22 335 45679999999999988776665444

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=83.17  E-value=11  Score=29.25  Aligned_cols=62  Identities=13%  Similarity=0.146  Sum_probs=45.1

Q ss_pred             cEEEEEEcCCCcHHHHHHHHHhHhCC------C-----CcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          296 KTITLDVQPYNTVQDVKVKLFDKLQT------P-----LHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       296 ~~~~l~v~~~~tV~~lK~~i~~~~gi------p-----~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ....+++. ..||.+|.+.+.++.+-      .     .....+..+|+....+..   .-+++|+.|.++..+.||
T Consensus        16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG   88 (88)
T TIGR01687        16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG   88 (88)
T ss_pred             ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence            34667775 88999999999887641      0     123556778887765432   678999999999888876

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]

Probab=83.16  E-value=0.6  Score=45.09  Aligned_cols=76  Identities=21%  Similarity=0.318  Sum_probs=55.6

Q ss_pred             CCcEEEEEecCCc--EEEEEEcCCCcHHHHHHHHHhHhC--CCCcceEEEEcCeecCCCCccccCCCC--CCCEEEEEee
Q 036691          284 SPFQIFVKTWGGK--TITLDVQPYNTVQDVKVKLFDKLQ--TPLHLQSIVFAGKRLFENHVLARYNIQ--KHSTLHMVLA  357 (426)
Q Consensus       284 ~~m~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~gk~L~d~~tL~~y~I~--~~~ti~l~~~  357 (426)
                      .+..++||..+.+  -.++..+..-||++||..++.-+.  =-+.+|||+|.||.|.|..+|+|.=++  +.-..|+++.
T Consensus         8 ~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcn   87 (391)
T KOG4583|consen    8 FPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCN   87 (391)
T ss_pred             cceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcC
Confidence            4566788887654  445566678899999999988653  223589999999999999999987553  4556666654


Q ss_pred             cC
Q 036691          358 PS  359 (426)
Q Consensus       358 ~~  359 (426)
                      .+
T Consensus        88 sk   89 (391)
T KOG4583|consen   88 SK   89 (391)
T ss_pred             CC
Confidence            33

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=82.76  E-value=9.8  Score=27.67  Aligned_cols=61  Identities=10%  Similarity=0.085  Sum_probs=44.7

Q ss_pred             CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      +|+.+  ++....||.++-+.    .+++...-.+..+|..+... ...+.-+++|+.|.++..+.||
T Consensus         6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vgGG   66 (66)
T PRK05659          6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALGGG   66 (66)
T ss_pred             CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEecCC
Confidence            56654  55667788877644    68888888888998877644 2445568999999998777665

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=82.72  E-value=10  Score=28.21  Aligned_cols=55  Identities=15%  Similarity=0.177  Sum_probs=40.3

Q ss_pred             eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           73 TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        73 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      ... ++++.+.||.++-+.+    ++++..-.+..+|+....      +.-+++|+.+.++--..|
T Consensus        15 ~~~-~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~------~~~l~~gD~Veii~~V~G   69 (70)
T PRK08364         15 EKE-IEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE------DDPVKDGDYVEVIPVVSG   69 (70)
T ss_pred             ceE-EEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC------CcCcCCCCEEEEEccccC
Confidence            455 7888888999988764    677777677788888754      556788999988544443

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=82.46  E-value=5.1  Score=29.23  Aligned_cols=61  Identities=15%  Similarity=0.159  Sum_probs=44.9

Q ss_pred             CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      +|+.+  ++....||.+|.+.+    +++.+...+..+|+.+..+ ...++-+++||.|.++..+.||
T Consensus         5 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG   65 (65)
T cd00565           5 NGEPR--EVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG   65 (65)
T ss_pred             CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence            45544  445677899887665    5778888888999887543 3455679999999998887776

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>PRK07440 hypothetical protein; Provisional

Probab=82.43  E-value=11  Score=28.03  Aligned_cols=68  Identities=18%  Similarity=0.268  Sum_probs=49.6

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      +.|.|.+   +|+.  .++....||.+|-+    ..++++....+-.+|..+.-+ ...++-+++||.|.++--+.||
T Consensus         3 ~~m~i~v---NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG   70 (70)
T PRK07440          3 NPITLQV---NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG   70 (70)
T ss_pred             CceEEEE---CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence            4566665   5565  45567788887764    557888888889999888633 3566678999999998777665

>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]

Probab=82.23  E-value=2  Score=42.04  Aligned_cols=63  Identities=10%  Similarity=0.179  Sum_probs=56.5

Q ss_pred             CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCC--CccccCCCCCCCEEEEEe
Q 036691          294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN--HVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~--~tL~~y~I~~~~ti~l~~  356 (426)
                      ..+.+.+.++..-...++++.++...|++.+.--|+|+++.+.++  .+|..||+..++++.+-.
T Consensus        11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~   75 (380)
T KOG0012|consen   11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRC   75 (380)
T ss_pred             ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccC
Confidence            457888999999999999999999999999999999999999765  689999999999986643

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=82.09  E-value=7.6  Score=27.77  Aligned_cols=46  Identities=17%  Similarity=0.249  Sum_probs=36.2

Q ss_pred             EEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691           77 VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF  134 (426)
Q Consensus        77 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~  134 (426)
                      +++..+.|..+||.++..      +.-.++++|-+..+      |+-+++|+.+.+.-
T Consensus        10 ~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~------d~~L~e~D~v~~Ik   55 (57)
T PF14453_consen   10 IETEENTTLFELRKESKP------DADIVILNGFPTKE------DIELKEGDEVFLIK   55 (57)
T ss_pred             EEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCC------ccccCCCCEEEEEe
Confidence            778888999999998654      33378999998877      56778889888743

>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=81.58  E-value=3.9  Score=43.47  Aligned_cols=175  Identities=18%  Similarity=0.231  Sum_probs=101.5

Q ss_pred             cEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEE----CCeec--cCCCCcccccCCCcceeeec------cCc--cee
Q 036691          150 EIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIY----EGKKL--EDSKTLAFYDMKDECLLEMF------PSS--IQI  215 (426)
Q Consensus       150 k~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~----~g~~L--~d~~tL~~y~I~~~s~i~l~------~~~--~~i  215 (426)
                      +.+.+.|....++..+|+-|++..++|.+...+.-    ||..+  .++.||...  .++.+|.+.      ++.  |.|
T Consensus       877 r~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI  954 (1203)
T KOG4598|consen  877 RFHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKI  954 (1203)
T ss_pred             hheeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEE
Confidence            36788999999999999999999999999887764    33332  344555433  345555554      222  222


Q ss_pred             EE-EcCC---CcE---EEEeecccccHHHHHHHHHHHhC--------CCCCceeEE-----ecCeec-CCCccccccCCC
Q 036691          216 FV-RTPI---EEI---VRLEVEVLIVVRDVKEIVANIID--------LSLGNQDLF-----YAGTKL-EACKTLASYGIK  274 (426)
Q Consensus       216 ~V-~~~~---g~~---~~l~v~~~~tV~~lK~~I~~~~~--------ip~~~q~L~-----~~g~~L-~d~~tL~~y~I~  274 (426)
                      +. ....   .++   +..-+..++||+..|..+-.+..        ++..+.|+-     -.|+.+ +++.++.|-+-.
T Consensus       955 ~~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen  955 ILLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred             EeehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhh
Confidence            21 1111   111   23446889999998877544432        222222221     123444 445455443311


Q ss_pred             CCccccc-----------CCCCcEEEEEecCCcEEEEEEc-------CCCcHHHHHHHHHhHhCCCCcceEE
Q 036691          275 NNYVLDV-----------LPSPFQIFVKTWGGKTITLDVQ-------PYNTVQDVKVKLFDKLQTPLHLQSI  328 (426)
Q Consensus       275 ~~~~l~l-----------~~~~m~i~v~~~~g~~~~l~v~-------~~~tV~~lK~~i~~~~gip~~~q~L  328 (426)
                      -.+.+.+           ......|+|+-|  +.-++++.       ..+++.++++.+.+-.|||++...+
T Consensus      1035 ~~~~~~~qE~~deV~~~k~~~sL~i~vRRW--~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~ 1104 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGESLPIMVRRW--RPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAI 1104 (1203)
T ss_pred             hHHHHHHHHHHhhcccCCCCccchhhheec--cccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhh
Confidence            1111111           122356788877  33333333       3457899999999999999998765

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=81.51  E-value=9.4  Score=29.66  Aligned_cols=66  Identities=8%  Similarity=0.084  Sum_probs=48.5

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |.|.|   +|+.+.+  ....||.+|-+.    .++++....+-.+|..+. ......+-+++||.|.++-.+.||
T Consensus        19 m~I~V---NG~~~~~--~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG   84 (84)
T PRK06083         19 ITISI---NDQSIQV--DISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG   84 (84)
T ss_pred             EEEEE---CCeEEEc--CCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence            45544   5665544  567788877664    478888888889999884 345777889999999998777665

>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures

Probab=80.29  E-value=0.54  Score=45.23  Aligned_cols=59  Identities=15%  Similarity=0.168  Sum_probs=0.0

Q ss_pred             CCcHHHHHHHHHh----------HhCCCCcceE-----EEEcCeecCCCCccccCCCC-------CCCEEEEEeecCCCc
Q 036691          305 YNTVQDVKVKLFD----------KLQTPLHLQS-----IVFAGKRLFENHVLARYNIQ-------KHSTLHMVLAPSSRI  362 (426)
Q Consensus       305 ~~tV~~lK~~i~~----------~~gip~~~q~-----L~~~gk~L~d~~tL~~y~I~-------~~~ti~l~~~~~gg~  362 (426)
                      +.||.++|..++.          ++++|.+..+     |+|+.|.+-|++||.+..=.       .+.++.+.+-+-||+
T Consensus       103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGGa  182 (309)
T PF12754_consen  103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGGA  182 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECCc
Confidence            5899999999999          8999999999     99999999999999887544       467777766666775


Q ss_pred             c
Q 036691          363 I  363 (426)
Q Consensus       363 ~  363 (426)
                      .
T Consensus       183 ~  183 (309)
T PF12754_consen  183 A  183 (309)
T ss_dssp             -
T ss_pred             c
Confidence            4

Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.

>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras

Probab=80.17  E-value=6.8  Score=29.32  Aligned_cols=45  Identities=20%  Similarity=0.172  Sum_probs=36.8

Q ss_pred             EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC
Q 036691          288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG  332 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g  332 (426)
                      +.|..++|+...+.+.|+.||.+.-.++.++.|+.++...++..|
T Consensus         3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~   47 (71)
T PF02196_consen    3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG   47 (71)
T ss_dssp             EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence            567778999999999999999999999999999999988776544

It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	426
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		1e-22
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		2e-21
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		3e-21
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		5e-16
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		1e-22
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		3e-21
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		6e-16
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		1e-22
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		5e-22
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		5e-16
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-22
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		1e-21
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		2e-21
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		6e-16
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		1e-22
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		4e-22
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		1e-21
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		4e-16
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-16
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		4e-16
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		7e-16
3jvz_X	81	E2~ubiquitin-Hect Length = 81		7e-16
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		7e-16
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		8e-16
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		8e-16
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		8e-16
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		8e-16
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		9e-16
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		9e-16
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		9e-16
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		9e-16
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		9e-16
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		9e-16
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		9e-16
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		1e-15
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		1e-15
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		1e-15
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		1e-15
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		2e-15
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		2e-15
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		2e-15
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		2e-15
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		2e-15
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		3e-15
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		4e-15
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		5e-15
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		5e-15
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		6e-15
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		7e-15
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		8e-15
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		8e-15
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		8e-15
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		1e-14
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		1e-14
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		1e-14
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-14
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		2e-14
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		2e-14
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		3e-14
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		3e-14
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		3e-14
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		4e-14
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		4e-14
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		5e-14
4hjk_A	77	U7ub7 Disulfide Variant Length = 77		6e-14
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		6e-14
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		7e-14
2gbm_A	84	Crystal Structure Of The 35-36 8 Glycine Insertion		8e-14
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		8e-14
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		9e-14
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		1e-13
3u5c_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-13
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		2e-13
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		2e-13
3mtn_B	85	Usp21 In Complex With A Ubiquitin-based, Usp21-spec		3e-13
2kdi_A	114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		4e-13
4hk2_A	78	U7ub25.2540 Length = 78		4e-13
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		2e-12
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-12
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		4e-12
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		5e-12
3n3k_B	85	The Catalytic Domain Of Usp8 In Complex With A Usp8		5e-10
1gjz_A	53	Solution Structure Of A Dimeric N-Terminal Fragment		2e-08
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		3e-08
4hcp_B	78	Crystal Structure Of Burkholderia Pseudomallei Effe		5e-07
2bkr_B	77	Nedd8 Nedp1 Complex Length = 77		6e-07
1ndd_B	76	Structure Of Nedd8 Length = 76		6e-07
3gzn_I	82	Structure Of Nedd8-Activating Enzyme In Complex Wit		6e-07
4f8c_B	88	Structure Of The Cif:nedd8 Complex - Yersinia Pseud		7e-07
2nvu_I	81	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		5e-06
3dqv_A	81	Structural Insights Into Nedd8 Activation Of Cullin		6e-06
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		9e-06
3dbl_I	88	Structural Dissection Of A Gating Mechanism Prevent		9e-06

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T +E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132
Query: 120 TSMNIKSESIIHLVF 134
           +  NI+ ES +HLV 
Sbjct: 133 SDYNIQKESTLHLVL 147

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T++ 
Sbjct: 1   MQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD 58
Query: 122 MNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXDHI 181
            NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA              
Sbjct: 59  YNIQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 118
Query: 182 MIYEGKKLEDSKTLAFYDMKDECLLEM 208
           +I+ GK+LED +TL+ Y+++ E  L +
Sbjct: 119 LIFAGKQLEDGRTLSDYNIQKESTLHL 145

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 213 IQIFVRTPXXXXXXXXXXXXXXXXDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           +QIFV+T                 +VK  + +   +    Q L +AG +LE  +TL+ Y 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 273 IKNNYVLDV---LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV 329
           I+    L +   L    QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 330 FAGKRLFENHVLARYNIQKHSTLHMVL 356
           FAGK+L +   L+ YNIQK STLH+VL
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVL 147

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQ------AAVKELL 399
           IQK STLH+VL     +                   +  E  K K Q         + L+
Sbjct: 61  IQKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 400 VDQVALQDDRTLADYGMDLSEKVVLVF 426
                L+D RTL+DY +     + LV 
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVL 147

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T +E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132
Query: 120 TSMNIKSESIIHLVF 134
           +  NI+ ES +HLV 
Sbjct: 133 SDYNIQKESTLHLVL 147

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score = 99.8 bits (247), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 214 QIFVRTPXXXXXXXXXXXXXXXXDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGI 273
           QIFV+T                 +VK  + +   +    Q L +AG +LE  +TL+ Y I
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 274 KNNYVLDV---LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF 330
           +    L +   L    QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++F
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 331 AGKRLFENHVLARYNIQKHSTLHMVL 356
           AGK+L +   L+ YNIQK STLH+VL
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVL 147

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 74/146 (50%), Gaps = 6/146 (4%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 347 QKHSTLHMVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQ------AAVKELLV 400
           QK STLH+VL     +                   +  E  K K Q         + L+ 
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121
Query: 401 DQVALQDDRTLADYGMDLSEKVVLVF 426
               L+D RTL+DY +     + LV 
Sbjct: 122 AGKQLEDGRTLSDYNIQKESTLHLVL 147

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 17  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 76
Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T +E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 77  GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 134
Query: 120 TSMNIKSESIIHLVF 134
           +  NI+ ES +HLV 
Sbjct: 135 SDYNIQKESTLHLVL 149

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 211 SSIQIFVRTPXXXXXXXXXXXXXXXXDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLAS 270
            S+QIFV+T                 +VK  + +   +    Q L +AG +LE  +TL+ 
Sbjct: 1   GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 60
Query: 271 YGIKNNYVLDV---LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQS 327
           Y I+    L +   L    QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q 
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 120
Query: 328 IVFAGKRLFENHVLARYNIQKHSTLHMVL 356
           ++FAGK+L +   L+ YNIQK STLH+VL
Sbjct: 121 LIFAGKQLEDGRTLSDYNIQKESTLHLVL 149

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 346 IQKHSTLHMVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQ------AAVKELL 399
           IQK STLH+VL     +                   +  E  K K Q         + L+
Sbjct: 63  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 122
Query: 400 VDQVALQDDRTLADYGMDLSEKVVLVF 426
                L+D RTL+DY +     + LV 
Sbjct: 123 FAGKQLEDGRTLSDYNIQKESTLHLVL 149

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T +E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132
Query: 120 TSMNIKSESIIHLVF 134
           +  NI+ ES +HLV 
Sbjct: 133 SDYNIQKESTLHLVL 147

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T++ 
Sbjct: 1   MQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD 58
Query: 122 MNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXDHI 181
            NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA              
Sbjct: 59  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 118
Query: 182 MIYEGKKLEDSKTLAFYDMKDECLLEM 208
           +I+ GK+LED +TL+ Y+++ E  L +
Sbjct: 119 LIFAGKQLEDGRTLSDYNIQKESTLHL 145

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 213 IQIFVRTPXXXXXXXXXXXXXXXXDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           +QIFV+T                 +VK  + +   +    Q L +AG +LE  +TL+ Y 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 273 IKNNYVLDV---LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV 329
           I+    L +   L    QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 330 FAGKRLFENHVLARYNIQKHSTLHMVL 356
           FAGK+L +   L+ YNIQK STLH+VL
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVL 147

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score = 82.0 bits (201), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQ------AAVKELL 399
           IQK STLH+VL     +                   +  E  K K Q         + L+
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120
Query: 400 VDQVALQDDRTLADYGMDLSEKVVLVF 426
                L+D RTL+DY +     + LV 
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVL 147

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 35  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94
Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T +E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 95  GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 152
Query: 120 TSMNIKSESIIHLVF 134
           +  NI+ ES +HLV 
Sbjct: 153 SDYNIQKESTLHLVL 167

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 2/149 (1%)
Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
           S M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 19  SHMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 76
Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIXXXXXXXXXXD 179
           +  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA            
Sbjct: 77  SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 136
Query: 180 HIMIYEGKKLEDSKTLAFYDMKDECLLEM 208
             +I+ GK+LED +TL+ Y+++ E  L +
Sbjct: 137 QRLIFAGKQLEDGRTLSDYNIQKESTLHL 165

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 211 SSIQIFVRTPXXXXXXXXXXXXXXXXDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLAS 270
           S +QIFV+T                 +VK  + +   +    Q L +AG +LE  +TL+ 
Sbjct: 19  SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 78
Query: 271 YGIKNNYVLDV---LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQS 327
           Y I+    L +   L    QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q 
Sbjct: 79  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 138
Query: 328 IVFAGKRLFENHVLARYNIQKHSTLHMVL 356
           ++FAGK+L +   L+ YNIQK STLH+VL
Sbjct: 139 LIFAGKQLEDGRTLSDYNIQKESTLHLVL 167

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S  QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ 
Sbjct: 19  SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 78
Query: 344 YNIQKHSTLHMVLAPSSRIIEXXXXXXXXXXXXXXXXXEVKEMAKVKFQ------AAVKE 397
           YNIQK STLH+VL     +                   +  E  K K Q         + 
Sbjct: 79  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 138
Query: 398 LLVDQVALQDDRTLADYGMDLSEKVVLVF 426
           L+     L+D RTL+DY +     + LV 
Sbjct: 139 LIFAGKQLEDGRTLSDYNIQKESTLHLVL 167

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 53/71 (74%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK Q P   Q ++FAGK+L +   L+ YN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 66  IQKESTLHLVL 76

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score = 81.6 bits (200), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 53/73 (72%)
Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S  QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ 
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61
Query: 344 YNIQKHSTLHMVL 356
           YNIQK STLH+VL
Sbjct: 62  YNIQKESTLHLVL 74

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score = 81.6 bits (200), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 5   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 64
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 65  IQKESTLHLVL 75

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 53/73 (72%)
Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S  QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ 
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61
Query: 344 YNIQKHSTLHMVL 356
           YNIQK STLH+VL
Sbjct: 62  YNIQKESTLHLVL 74

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 53/73 (72%)
Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S  QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ 
Sbjct: 1   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 60
Query: 344 YNIQKHSTLHMVL 356
           YNIQK STLH+VL
Sbjct: 61  YNIQKESTLHLVL 73

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 2   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 62  IQKESTLHLVL 72

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 347 QKHSTLHMVL 356
           QK STLH+VL
Sbjct: 62  QKESTLHLVL 71

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/71 (54%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 53/73 (72%)
Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S  QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ 
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61
Query: 344 YNIQKHSTLHMVL 356
           YNIQ+ STLH+VL
Sbjct: 62  YNIQRESTLHLVL 74

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQ+ STLH+VL
Sbjct: 61  IQRESTLHLVL 71

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAG++L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 37  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 96
Query: 347 QKHSTLHMVL 356
           QK STLH+VL
Sbjct: 97  QKESTLHLVL 106

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 10  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSEYNI 69
Query: 347 QKHSTLHMVL 356
           QK STLH+VL
Sbjct: 70  QKESTLHLVL 79

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 107 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 166
Query: 347 QKHSTLHMVL 356
           QK STLH+VL
Sbjct: 167 QKESTLHLVL 176

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 235 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 294
Query: 347 QKHSTLHMVL 356
           QK STLH+VL
Sbjct: 295 QKESTLHLVL 304

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 51/72 (70%)
Query: 285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARY 344
           P QIFVKT  GKTITL+V+  +T+ +VK K+ DK   P   Q ++FAGK+L +   L+ Y
Sbjct: 22  PMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 81
Query: 345 NIQKHSTLHMVL 356
           NIQK STLH+VL
Sbjct: 82  NIQKESTLHLVL 93

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 51/71 (71%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK       Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 62
Query: 347 QKHSTLHMVL 356
           QK STLH+VL
Sbjct: 63  QKESTLHLVL 72

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 37  QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 96
Query: 347 QKHSTLHMVL 356
           QK STLH+VL
Sbjct: 97  QKESTLHLVL 106

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 51/71 (71%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAG +L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQ+ STLH+VL
Sbjct: 61  IQRESTLHLVL 71

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/70 (55%), Positives = 51/70 (72%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITLDV+  +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 347 QKHSTLHMVL 356
           QK STLH+VL
Sbjct: 62  QKESTLHLVL 71

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 53/78 (67%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTI L+V+  +T+++VK K+ DK   P   Q ++FAGK+L E   LA YNI
Sbjct: 2   QIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNI 61
Query: 347 QKHSTLHMVLAPSSRIIE 364
           QK STLH+VL     ++E
Sbjct: 62  QKESTLHLVLRLRGGVME 79

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 7/78 (8%)
Query: 286 FQIFVKTW-------GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN 338
            QIFVKT        GGKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L + 
Sbjct: 1   MQIFVKTLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG 60
Query: 339 HVLARYNIQKHSTLHMVL 356
             L+ YNIQK STLH+VL
Sbjct: 61  RTLSDYNIQKESTLHLVL 78

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFV T  GK ITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 18  MQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 77
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 78  IQKESTLHLVL 88

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+  +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK ST H+VL
Sbjct: 61  IQKESTXHLVL 71

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/78 (52%), Positives = 53/78 (67%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+  +T+ +VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 347 QKHSTLHMVLAPSSRIIE 364
           QK STLH+VL     IIE
Sbjct: 62  QKESTLHLVLRLRGGIIE 79

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 50/71 (70%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+  +T+ +VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 4   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 64  IQKESTLHLVL 74

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 50/71 (70%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+P +++  +K K+ +K   P   Q ++FAGK+L E   L+ YN
Sbjct: 4   MQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYN 63
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 64  IQKESTLHLVL 74

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 51/73 (69%)
Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S  QIFVKT  GKTITL+V+  +T+ +VK K+ DK   P   Q ++FAGK+L +   L+ 
Sbjct: 19  SHMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 78
Query: 344 YNIQKHSTLHMVL 356
           YNIQK STLH+VL
Sbjct: 79  YNIQKESTLHLVL 91

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 50/71 (70%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+  +T+ +VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+  +T+ +VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 347 QKHSTLHMVL 356
           QK STLH+VL
Sbjct: 62  QKESTLHLVL 71

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 52/70 (74%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAG++L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNI 61
Query: 347 QKHSTLHMVL 356
           Q+ STLH+VL
Sbjct: 62  QRESTLHLVL 71

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score = 75.5 bits (184), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 50/71 (70%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+  +T+ +VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant Length = 77

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 49/70 (70%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVK   GKT TL+V+P +T+++VK K+ DK+  P   Q ++FAGK+L +   L+ YN
Sbjct: 2   MQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 346 IQKHSTLHMV 355
           IQK STLH V
Sbjct: 62  IQKESTLHCV 71

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 49/71 (69%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+  +T+ +VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH VL
Sbjct: 61  IQKESTLHSVL 71

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score = 75.1 bits (183), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 5/75 (6%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK-----LQTPLHLQSIVFAGKRLFENHVL 341
           QIFVKT  GKTITL+V+P +T+++VK K+ DK     L  P   Q ++FAGK+L +   L
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRTL 61
Query: 342 ARYNIQKHSTLHMVL 356
           + YNIQK STLH+VL
Sbjct: 62  SDYNIQKESTLHLVL 76

>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion Mutant Of Ubiquitin Length = 84

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 8/79 (10%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK--------LQTPLHLQSIVFAGKRLFE 337
            QIFVKT  GKTITL+V+P +T+++VK K+ DK           P   Q ++FAGK+L +
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 338 NHVLARYNIQKHSTLHMVL 356
              L+ YNIQK STLH+VL
Sbjct: 61  GRTLSDYNIQKESTLHLVL 79

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 51/71 (71%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            Q+F+KT  GKT+T++V+P +TV++ K K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK ST+H+VL
Sbjct: 61  IQKESTIHLVL 71

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTIT+DV   +TV  VK K++DK   P   Q ++F GK+L +++ ++ YN
Sbjct: 6   MQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSDYN 65
Query: 346 IQKHSTLHMVL 356
           +QK STLH+VL
Sbjct: 66  VQKESTLHLVL 76

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 49/71 (69%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFV T  G  ITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 18  MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 77
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 78  IQKESTLHLVL 88

>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 152

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 49/70 (70%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  GKTITL+V+  +T+ +VK K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMV 355
           IQK STLH+V
Sbjct: 61  IQKESTLHLV 70

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 51/71 (71%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            Q+F+KT  GKT T++++P +T++++K K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 10  LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 69
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 70  IQKESTLHLVL 80

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 52/71 (73%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            Q+FVKT  GKT+T++++P +TV+++K K+ DK   P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           +QK ST+H+VL
Sbjct: 61  LQKESTIHLVL 71

>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 85

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 49/69 (71%)
Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S  QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ 
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61
Query: 344 YNIQKHSTL 352
           YNIQK STL
Sbjct: 62  YNIQKWSTL 70

>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
           FQIF KT  GKTITL+V+  +T+ +VK K+ DK   P   Q +++AGK+L +   L+ YN
Sbjct: 10  FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYN 69
Query: 346 IQKHSTLHMVL 356
           IQ+ STLH+VL
Sbjct: 70  IQRESTLHLVL 80

>pdb|4HK2|A Chain A, U7ub25.2540 Length = 78

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 48/69 (69%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVK   GKT TL+V+P +T+++VK K+ DKL  P   Q ++FAGKRL +   L+ YNI
Sbjct: 4   QIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSDYNI 63
Query: 347 QKHSTLHMV 355
           QK STL  V
Sbjct: 64  QKESTLRGV 72

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 52/79 (65%), Gaps = 8/79 (10%)
Query: 286 FQIFVKTWGG--------KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFE 337
            QIFVKT  G        KTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +
Sbjct: 1   MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 60
Query: 338 NHVLARYNIQKHSTLHMVL 356
              L+ YNIQK STLH+VL
Sbjct: 61  GRTLSDYNIQKESTLHLVL 79

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/70 (45%), Positives = 50/70 (71%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFV+T  G+TITL+V+  +T+ +V+ ++ D+   P   Q ++FAG++L +   LA YNI
Sbjct: 9   QIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYNI 68
Query: 347 QKHSTLHMVL 356
           Q+ STLH+VL
Sbjct: 69  QRESTLHLVL 78

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 47/71 (66%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            QIFVKT  G TITL+V+  +T+ +VK K+      P   Q ++FAGK+L +   L+ YN
Sbjct: 1   MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 346 IQKHSTLHMVL 356
           IQK STLH+VL
Sbjct: 61  IQKESTLHLVL 71

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 49/70 (70%)
Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FA K+L +   L+ YNI
Sbjct: 4   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSDYNI 63
Query: 347 QKHSTLHMVL 356
            K S L++VL
Sbjct: 64  HKESFLYLVL 73

>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 85

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S  +I VKT  G+TI L+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ 
Sbjct: 2   SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61
Query: 344 YNIQKHS 350
           YNI  HS
Sbjct: 62  YNIHNHS 68

>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of Human Ubiquitin Length = 53

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRL 335
            QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L
Sbjct: 3   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 52

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ 347
           I VKT  GK I +D++P +T+  +K ++ +K   P   Q +++AGK+L ++     YNI+
Sbjct: 3   IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62
Query: 348 KHSTLHMVLA 357
             S LH+VLA
Sbjct: 63  GGSVLHLVLA 72

>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Nedd8 Length = 78

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ 347
           I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK++ +    A Y I 
Sbjct: 5   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 64
Query: 348 KHSTLHMVLA 357
             S LH+VLA
Sbjct: 65  GGSVLHLVLA 74

>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex Length = 77

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ 347
           I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK++ +    A Y I 
Sbjct: 4   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 63
Query: 348 KHSTLHMVLA 357
             S LH+VLA
Sbjct: 64  GGSVLHLVLA 73

>pdb|1NDD|B Chain B, Structure Of Nedd8 Length = 76

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ 347
           I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK++ +    A Y I 
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
Query: 348 KHSTLHMVLA 357
             S LH+VLA
Sbjct: 63  GGSVLHLVLA 72

>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 82

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ 347
           I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK++ +    A Y I 
Sbjct: 9   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 68
Query: 348 KHSTLHMVLA 357
             S LH+VLA
Sbjct: 69  GGSVLHLVLA 78

>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia Pseudotuberculosis Cycle Inhibiting Factor In Complex With Human Nedd8 Length = 88

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ 347
           I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK++ +    A Y I 
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62
Query: 348 KHSTLHMVLA 357
             S LH+VLA
Sbjct: 63  GGSVLHLVLA 72

>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 81

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ 347
           I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK++ +    A Y I 
Sbjct: 8   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 67
Query: 348 KHSTLHMVLA 357
             S LH+VLA
Sbjct: 68  GGSVLHLVLA 77

>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 81

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ 347
           I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK+  +    A Y I 
Sbjct: 8   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXNDEKTAADYKIX 67
Query: 348 KHSTLHMVLA 357
             S LH+VLA
Sbjct: 68  GGSVLHLVLA 77

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ 347
           I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK++ +    A Y I 
Sbjct: 15  IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 74
Query: 348 KHSTLHMVL 356
             S LH+VL
Sbjct: 75  GGSVLHLVL 83

>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 88

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 41/69 (59%)
Query: 288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ 347
           I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK++ +    A Y I 
Sbjct: 15  IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 74
Query: 348 KHSTLHMVL 356
             S LH+VL
Sbjct: 75  GGSVLHLVL 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	426
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	5e-28
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	3e-21
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	1e-20
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	2e-20
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	1e-19
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	5e-27
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	2e-25
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	2e-22
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	2e-21
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-25
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-13
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-10
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	1e-09
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	9e-09
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	3e-25
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	3e-24
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	4e-22
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	2e-20
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	7e-16
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	8e-25
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	2e-13
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	7e-10
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	1e-09
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	1e-08
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	1e-24
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	8e-13
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	9e-11
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	4e-10
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	8e-09
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-24
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	3e-13
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	5e-11
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	2e-10
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	8e-09
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	1e-24
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	1e-12
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	1e-09
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	2e-09
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	9e-09
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	2e-24
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	1e-14
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	1e-11
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	6e-10
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	7e-09
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	3e-24
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	3e-11
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	5e-11
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	4e-10
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	1e-07
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	7e-24
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	2e-14
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	3e-11
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	2e-09
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	2e-08
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	8e-24
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	4e-13
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	1e-10
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	1e-09
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	5e-09
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	8e-24
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	7e-13
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	6e-10
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	9e-09
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	2e-08
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	8e-24
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	8e-14
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	3e-11
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	2e-10
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	8e-08
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	1e-23
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	4e-14
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	3e-10
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	6e-09
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	8e-08
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	1e-23
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	4e-13
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	8e-11
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-09
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	1e-07
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	2e-23
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	8e-12
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	4e-10
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	4e-09
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	6e-08
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	7e-23
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	2e-14
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	2e-10
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	1e-09
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	2e-09
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	7e-23
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	2e-11
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	5e-10
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	1e-09
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	1e-07
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	8e-23
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	2e-12
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	8e-10
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	1e-09
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	1e-09
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	1e-22
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	3e-12
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	7e-10
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	4e-09
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	1e-08
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	2e-22
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	3e-12
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	1e-09
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	2e-08
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	2e-08
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	1e-21
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	6e-13
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	6e-10
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	6e-09
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	6e-08
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	5e-21
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	8e-13
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	3e-10
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	1e-08
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	4e-06
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	9e-21
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	2e-13
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	6e-09
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	2e-08
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	6e-06
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	8e-20
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-12
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-07
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	8e-06
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	2e-05
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	1e-19
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	1e-15
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-12
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-12
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-08
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-19
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	4e-11
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-09
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	3e-08
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	1e-07
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	1e-19
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	3e-16
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	9e-08
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	2e-06
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	5e-05
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	6e-19
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	1e-18
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	2e-13
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	5e-09
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	8e-09
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	1e-08
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	6e-19
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-10
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	7e-10
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	5e-07
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	2e-05
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	1e-18
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	1e-10
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	6e-09
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	1e-07
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	3e-06
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	1e-18
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	2e-17
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	1e-09
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	3e-09
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	8e-07
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	7e-04
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	2e-17
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	1e-15
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	6e-08
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	2e-07
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	6e-07
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	2e-17
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	2e-11
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	3e-07
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	8e-06
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	1e-04
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	4e-17
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	8e-15
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	4e-07
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	2e-06
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-05
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	5e-17
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	7e-15
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	6e-08
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-07
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	5e-06
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	6e-17
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	2e-14
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	2e-08
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	4e-08
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	8e-07
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	9e-17
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-14
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	5e-08
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-07
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	7e-07
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	1e-16
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	2e-12
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	3e-08
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	5e-06
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	2e-16
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	7e-11
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	4e-07
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	7e-07
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	9e-05
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	4e-16
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	2e-15
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	2e-07
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	8e-06
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	7e-05
1we6_A	111	Splicing factor, putative; structural genomics, ub	1e-15
1we6_A	111	Splicing factor, putative; structural genomics, ub	9e-10
1we6_A	111	Splicing factor, putative; structural genomics, ub	1e-07
1we6_A	111	Splicing factor, putative; structural genomics, ub	1e-06
1we6_A	111	Splicing factor, putative; structural genomics, ub	5e-05
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	2e-15
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	2e-09
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	4e-04
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	5e-04
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	2e-15
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	3e-14
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	5e-08
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	8e-07
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	1e-05
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	9e-15
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	2e-11
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	1e-08
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	9e-04
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-13
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-09
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	3e-07
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	1e-05
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	3e-11
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	1e-08
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	3e-07
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	1e-05
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	6e-05
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	8e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	1e-07
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	3e-04
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	5e-07
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	3e-05
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	1e-06
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	1e-06
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	2e-05
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	3e-06
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	5e-06
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	2e-05
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	2e-04
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	5e-05
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	1e-04
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	6e-04
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	2e-04
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	4e-04
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	6e-04
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	8e-04
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	8e-04

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score =  107 bits (268), Expect = 5e-28
 Identities = 32/150 (21%), Positives = 61/150 (40%), Gaps = 6/150 (4%)

Query: 214 QIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFY--AGTKLEACKTLASY 271
            + V+       ++ +   + V ++K  +   I +    Q L    +G  L+    LAS 
Sbjct: 4   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 63

Query: 272 GIKNNYVLDVL----PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQS 327
           G+     + ++      P  I V+   G++ T +V+   TV  +K ++         L  
Sbjct: 64  GLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFW 123

Query: 328 IVFAGKRLFENHVLARYNIQKHSTLHMVLA 357
           + F GK L +   L  Y ++  ST+ M L 
Sbjct: 124 LTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 153

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 89.2 bits (221), Expect = 3e-21
 Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFF--AGDRLEAGR-LVDYGIRNNSTLHFLHQ 57
           + +  S  +  LKA I  K G+      L    +G  L+    L   G+   ST+  +  
Sbjct: 17  VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76

Query: 58  -NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDT 116
            +   + + V+    +++T  E     TV ++K  +   EG+Q D F L ++GK L ED 
Sbjct: 77  KSDEPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQ 134

Query: 117 ATMTSMNIKSESIIHLV 133
             +    +K  S + + 
Sbjct: 135 LPLGEYGLKPLSTVFMN 151

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 87.3 bits (216), Expect = 1e-20
 Identities = 24/141 (17%), Positives = 50/141 (35%), Gaps = 15/141 (10%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF--AGKRLFENHVLARY 344
            + VK   G    + +    +V ++K ++  K+      Q +    +G  L +   LA  
Sbjct: 4   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 63

Query: 345 NIQKHSTLHMVLAPSSRIIELPLIFIDPSISLSIS--------ISEVKEMAKVKFQAAVK 396
            +   ST+ +V+  S        I +  +   S +        ++ +K+           
Sbjct: 64  GLGPGSTVLLVVDKSDEP---LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD 120

Query: 397 E--LLVDQVALQDDRTLADYG 415
              L  +   L+D   L +YG
Sbjct: 121 LFWLTFEGKPLEDQLPLGEYG 141

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 86.9 bits (215), Expect = 2e-20
 Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 5/150 (3%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYD--GKLLKEDTATM 119
             L VK+       V       +V  +K  I  K G+ + Q  L     G  L +D   +
Sbjct: 3   WDLTVKMLAGNEFQV-SLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVAL-QDRVPL 60

Query: 120 TSMNIKSESIIHLVFC-PKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAA 178
            S  +   S + LV     E LSI V+   G     EV+ +  +  +K  V  + GV   
Sbjct: 61  ASQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD 120

Query: 179 DHIMIYEGKKLEDSKTLAFYDMKDECLLEM 208
              + +EGK LED   L  Y +K    + M
Sbjct: 121 LFWLTFEGKPLEDQLPLGEYGLKPLSTVFM 150

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 84.2 bits (208), Expect = 1e-19
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYE--GKKLEDSKTLAFYD 199
           + VK   G    + +  S ++ ++KA +   +GV A    +     G  L+D   LA   
Sbjct: 5   LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 64

Query: 200 MKDECLL----EMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDL 255
           +     +    +     + I VR         EV +   V  +K+ V+ +  +      L
Sbjct: 65  LGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWL 124

Query: 256 FYAGTKLEACKTLASYGIKNNYVL 279
            + G  LE    L  YG+K    +
Sbjct: 125 TFEGKPLEDQLPLGEYGLKPLSTV 148

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  105 bits (263), Expect = 5e-27
 Identities = 63/156 (40%), Positives = 92/156 (58%), Gaps = 3/156 (1%)

Query: 205 LLEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEA 264
            L    S +QIFV+T   + + LEVE    + +VK  + +   +    Q L +AG +LE 
Sbjct: 13  GLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 72

Query: 265 CKTLASYGIKNNYVLDVL---PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQT 321
            +TL+ Y I+    L ++       QIFVKT  GKTITL+V+P +T+++VK K+ DK   
Sbjct: 73  GRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 132

Query: 322 PLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA 357
           P   Q ++FAGK+L +   L+ YNIQK STLH+VL 
Sbjct: 133 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 168

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score =  101 bits (252), Expect = 2e-25
 Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 6/151 (3%)

Query: 271 YGIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF 330
           +   ++  L    S  QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++F
Sbjct: 6   HHHHHSSGLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 331 AGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVK 390
           AGK+L +   L+ YNIQK STLH+VL     +          +I+L +  S+  E  K K
Sbjct: 66  AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAK 125

Query: 391 FQ------AAVKELLVDQVALQDDRTLADYG 415
            Q         + L+     L+D RTL+DY 
Sbjct: 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 156

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 92.4 bits (229), Expect = 2e-22
 Identities = 62/134 (46%), Positives = 85/134 (63%), Gaps = 3/134 (2%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 35  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T +E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 95  GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 152

Query: 120 TSMNIKSESIIHLV 133
           +  NI+ ES +HLV
Sbjct: 153 SDYNIQKESTLHLV 166

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 89.7 bits (222), Expect = 2e-21
 Identities = 62/162 (38%), Positives = 94/162 (58%), Gaps = 2/162 (1%)

Query: 48  NNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY 107
           ++     L    S M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++
Sbjct: 7   HHHHSSGLVPRGSHMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIF 65

Query: 108 DGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKA 167
            GK L ED  T++  NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA
Sbjct: 66  AGKQL-EDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 124

Query: 168 IVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMF 209
            +    G+      +I+ GK+LED +TL+ Y+++ E  L + 
Sbjct: 125 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 166

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 97.8 bits (244), Expect = 2e-25
 Identities = 24/74 (32%), Positives = 41/74 (55%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
               I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK++ +    A 
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70

Query: 344 YNIQKHSTLHMVLA 357
           Y I   S LH+VL 
Sbjct: 71  YKILGGSVLHLVLR 84

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M + VK  T +   + +  P   V+ IK  ++ KEGI   Q  L+Y GK +  D  T 
Sbjct: 11  GSMLIKVKTLTGKEIEI-DIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQM-NDEKTA 68

Query: 120 TSMNIKSESIIHLV 133
               I   S++HLV
Sbjct: 69  ADYKILGGSVLHLV 82

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           I VK  TG+ + ++++ +  +  +K  V    G+      +IY GK++ D KT A Y + 
Sbjct: 15  IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 74

Query: 202 DECLLEM 208
              +L +
Sbjct: 75  GGSVLHL 81

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 20/69 (28%), Positives = 32/69 (46%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLAS 270
            S+ I V+T   + + +++E    V  +KE V     +    Q L Y+G ++   KT A 
Sbjct: 11  GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAAD 70

Query: 271 YGIKNNYVL 279
           Y I    VL
Sbjct: 71  YKILGGSVL 79

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 51.6 bits (124), Expect = 9e-09
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++ ++ ++ +K  +  KEGI      L ++G ++   +   DY I   S LH
Sbjct: 29 IEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 80

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 99.7 bits (248), Expect = 3e-25
 Identities = 61/148 (41%), Positives = 90/148 (60%), Gaps = 3/148 (2%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           +QIFV+T   + + LEVE    + +VK  + +   +    Q L +AG +LE  +TL+ Y 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 273 IKNNYVLDVL---PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV 329
           I+    L ++       QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 330 FAGKRLFENHVLARYNIQKHSTLHMVLA 357
           FAGK+L +   L+ YNIQK STLH+VL 
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLR 148

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 97.0 bits (241), Expect = 3e-24
 Identities = 54/135 (40%), Positives = 76/135 (56%), Gaps = 6/135 (4%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 347 QKHSTLHMVLAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQ------AAVKELLV 400
           QK STLH+VL     +          +I+L +  S+  E  K K Q         + L+ 
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 121

Query: 401 DQVALQDDRTLADYG 415
               L+D RTL+DY 
Sbjct: 122 AGKQLEDGRTLSDYN 136

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 91.2 bits (226), Expect = 4e-22
 Identities = 62/134 (46%), Positives = 85/134 (63%), Gaps = 3/134 (2%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 15  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M++FVK  T +T T +E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 75  GGMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 132

Query: 120 TSMNIKSESIIHLV 133
           +  NI+ ES +HLV
Sbjct: 133 SDYNIQKESTLHLV 146

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 86.6 bits (214), Expect = 2e-20
 Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 2/148 (1%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T++ 
Sbjct: 1   MQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD 58

Query: 122 MNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHI 181
            NI+ ES +HLV   +  + IFVK  TG+ + LEV+ S  I +VKA +    G+      
Sbjct: 59  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR 118

Query: 182 MIYEGKKLEDSKTLAFYDMKDECLLEMF 209
           +I+ GK+LED +TL+ Y+++ E  L + 
Sbjct: 119 LIFAGKQLEDGRTLSDYNIQKESTLHLV 146

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 73.5 bits (180), Expect = 7e-16
 Identities = 48/141 (34%), Positives = 77/141 (54%), Gaps = 3/141 (2%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           IFVK  TG+ + LEV+ S  I +VKA +    G+      +I+ GK+LED +TL+ Y+++
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62

Query: 202 DEC---LLEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYA 258
            E    L+      +QIFV+T   + + LEVE    + +VK  + +   +    Q L +A
Sbjct: 63  KESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122

Query: 259 GTKLEACKTLASYGIKNNYVL 279
           G +LE  +TL+ Y I+    L
Sbjct: 123 GKQLEDGRTLSDYNIQKESTL 143

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 96.3 bits (240), Expect = 8e-25
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
            S  Q+FVK   G +    + P + +  +K ++ D+   P   Q + F G+ L +   L 
Sbjct: 5   SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLG 64

Query: 343 RYNIQKHSTLHMVLA 357
            Y IQ   TL +   
Sbjct: 65  IYGIQDSDTLILSKK 79

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
           S +++FVK P   +       P   +  +K  I+ ++G+   Q  L + G++L +D   +
Sbjct: 6   SGIQVFVKNPDGGSYAY-AINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVL-QDWLGL 63

Query: 120 TSMNIKSESIIHLV 133
               I+    + L 
Sbjct: 64  GIYGIQDSDTLILS 77

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 54.7 bits (132), Expect = 7e-10
 Identities = 17/70 (24%), Positives = 30/70 (42%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
            S IQ+FV+ P        +     +  +K+ + +   L    Q L + G  L+    L 
Sbjct: 5   SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLG 64

Query: 270 SYGIKNNYVL 279
            YGI+++  L
Sbjct: 65  IYGIQDSDTL 74

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 14/67 (20%), Positives = 28/67 (41%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           +FVK   G      +  +  I  +K  +    G+      + ++G+ L+D   L  Y ++
Sbjct: 10  VFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQ 69

Query: 202 DECLLEM 208
           D   L +
Sbjct: 70  DSDTLIL 76

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          +  +  I  LK  I  ++G+ +    L F G  L+    L  YGI+++ TL 
Sbjct: 24 INPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLI 75

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 95.9 bits (239), Expect = 1e-24
 Identities = 38/74 (51%), Positives = 52/74 (70%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S  QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ 
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 344 YNIQKHSTLHMVLA 357
           YNIQK STL ++L 
Sbjct: 62  YNIQKWSTLFLLLR 75

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 62.8 bits (153), Expect = 8e-13
 Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
           S M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 2   SHMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 59

Query: 120 TSMNIKSESIIHLV 133
           +  NI+  S + L+
Sbjct: 60  SDYNIQKWSTLFLL 73

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 57.0 bits (138), Expect = 9e-11
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           IFVK  TG+ + LEV+ S  I +VKA +    G+      +I+ GK+LED +TL+ Y+++
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65

Query: 202 DECLLEM 208
               L +
Sbjct: 66  KWSTLFL 72

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLAS 270
           S +QIFV+T   + + LEVE    + +VK  + +   +    Q L +AG +LE  +TL+ 
Sbjct: 2   SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 271 YGIKNNYVL 279
           Y I+    L
Sbjct: 62  YNIQKWSTL 70

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STL 
Sbjct: 18 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLF 71

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 95.9 bits (239), Expect = 1e-24
 Identities = 32/74 (43%), Positives = 49/74 (66%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S  +I VKT  G+TI L+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ 
Sbjct: 2   SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 344 YNIQKHSTLHMVLA 357
           YNI  HS L+++L 
Sbjct: 62  YNIHNHSALYLLLK 75

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
           S M++ VK    +T  + E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T+
Sbjct: 2   SHMRIVVKTLMGRTIIL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 59

Query: 120 TSMNIKSESIIHLV 133
           +  NI + S ++L+
Sbjct: 60  SDYNIHNHSALYLL 73

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           I VK   G  + LEV+ S  I +VKA +    G+      +I+ GK+LED +TL+ Y++ 
Sbjct: 6   IVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIH 65

Query: 202 DECLLEM 208
           +   L +
Sbjct: 66  NHSALYL 72

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 22/69 (31%), Positives = 37/69 (53%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLAS 270
           S ++I V+T +   + LEVE    + +VK  + +   +    Q L +AG +LE  +TL+ 
Sbjct: 2   SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 61

Query: 271 YGIKNNYVL 279
           Y I N+  L
Sbjct: 62  YNIHNHSAL 70

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I N+S L+
Sbjct: 18 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALY 71

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 95.4 bits (238), Expect = 1e-24
 Identities = 15/75 (20%), Positives = 34/75 (45%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
            +FV+        ++V    ++  +K  +  +   P     ++FAGK L  +  +   ++
Sbjct: 2   IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDL 61

Query: 347 QKHSTLHMVLAPSSR 361
           ++ S +H+V  P  R
Sbjct: 62  EQQSIVHIVQRPRRR 76

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 17/72 (23%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M +FV+  ++    V E     ++  +K ++  ++G+ +DQ  +++ GK L  +  T+ +
Sbjct: 1   MIVFVRFNSSYGFPV-EVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKEL-PNHLTVQN 58

Query: 122 MNIKSESIIHLV 133
            +++ +SI+H+V
Sbjct: 59  CDLEQQSIVHIV 70

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 16/65 (24%), Positives = 33/65 (50%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           +FV+  +     +EV    +I  +K +V    GV A    +I+ GK+L +  T+   D++
Sbjct: 3   VFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLE 62

Query: 202 DECLL 206
            + ++
Sbjct: 63  QQSIV 67

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 13/66 (19%), Positives = 29/66 (43%)

Query: 214 QIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGI 273
            +FVR        +EV+    +  +KE+VA    +      + +AG +L    T+ +  +
Sbjct: 2   IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDL 61

Query: 274 KNNYVL 279
           +   ++
Sbjct: 62  EQQSIV 67

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++V     I  LK ++  ++G+  D   + FAG  L     + +  +   S +H
Sbjct: 15 VEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVH 68

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 97.6 bits (243), Expect = 2e-24
 Identities = 5/70 (7%), Positives = 14/70 (20%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
                    +     V+ +  V        +  Q    ++          E    +  + 
Sbjct: 2   SDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDY 61

Query: 347 QKHSTLHMVL 356
            +      V 
Sbjct: 62  VQVRQPIFVA 71

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 69.8 bits (171), Expect = 1e-14
 Identities = 5/74 (6%), Positives = 15/74 (20%), Gaps = 2/74 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M         Q         +  V     + +  +  Q++             +    + 
Sbjct: 1   MSDTEAPVEVQEDFE-VVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEE-VEVKDASL 58

Query: 122 MNIKSESIIHLVFC 135
           ++         V  
Sbjct: 59  VDYVQVRQPIFVAH 72

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 5/67 (7%), Positives = 12/67 (17%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
                   +     V+    +     I   V        +      +  + K  +  D  
Sbjct: 3   DTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYV 62

Query: 202 DECLLEM 208
                  
Sbjct: 63  QVRQPIF 69

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 56.4 bits (136), Expect = 6e-10
 Identities = 5/70 (7%), Positives = 12/70 (17%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           +         +     VE    V     I   +       +       +    K  +   
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVD 60

Query: 273 IKNNYVLDVL 282
                    +
Sbjct: 61  YVQVRQPIFV 70

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 53.7 bits (129), Expect = 7e-09
 Identities = 3/54 (5%), Positives = 10/54 (18%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
            V++  P+     +    +    +I             +              
Sbjct: 15 EVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQVRQPI 68

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 95.7 bits (238), Expect = 3e-24
 Identities = 40/92 (43%), Positives = 56/92 (60%)

Query: 266 KTLASYGIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHL 325
             L      + ++        QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   
Sbjct: 16  DELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 75

Query: 326 QSIVFAGKRLFENHVLARYNIQKHSTLHMVLA 357
           Q ++FAGK+L +   L+ YNIQK STLH+VL 
Sbjct: 76  QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 59.1 bits (143), Expect = 3e-11
 Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 4/99 (4%)

Query: 37  EAGRLVDYGI--RNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQV 94
             G +    +    N+        L  M++FVK  T +T T+ E  P  T++N+K  IQ 
Sbjct: 9   NDGWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQD 67

Query: 95  KEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133
           KEGI  DQ  L++ GK L ED  T++  NI+ ES +HLV
Sbjct: 68  KEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLHLV 105

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 58.3 bits (141), Expect = 5e-11
 Identities = 27/88 (30%), Positives = 47/88 (53%)

Query: 121 SMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADH 180
            + I + +   +       + IFVK  TG+ + LEV+ S  I +VKA +    G+     
Sbjct: 17  ELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ 76

Query: 181 IMIYEGKKLEDSKTLAFYDMKDECLLEM 208
            +I+ GK+LED +TL+ Y+++ E  L +
Sbjct: 77  RLIFAGKQLEDGRTLSDYNIQKESTLHL 104

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 56.0 bits (135), Expect = 4e-10
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 179 DHIMIYEGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDV 238
            +I       +E    L      D  +      ++QIFV+T   + + LEVE    + +V
Sbjct: 3   GYIDTNNDGWIEGD-ELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENV 61

Query: 239 KEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVL 279
           K  + +   +    Q L +AG +LE  +TL+ Y I+    L
Sbjct: 62  KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 102

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH
Sbjct: 50  LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 103

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 93.4 bits (233), Expect = 7e-24
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
            I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK++ +    A Y I
Sbjct: 2   LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKI 61

Query: 347 QKHSTLHMVLA 357
              S LH+VLA
Sbjct: 62  LGGSVLHLVLA 72

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M + VK  T +   + +  P   V+ IK  ++ KEGI   Q  L+Y GK +  D  T   
Sbjct: 1   MLIKVKTLTGKEIEI-DIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQM-NDEKTAAD 58

Query: 122 MNIKSESIIHLV 133
             I   S++HLV
Sbjct: 59  YKILGGSVLHLV 70

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 58.0 bits (141), Expect = 3e-11
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           I VK  TG+ + ++++ +  +  +K  V    G+      +IY GK++ D KT A Y + 
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62

Query: 202 DECLLEM 208
              +L +
Sbjct: 63  GGSVLHL 69

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++ ++ ++ +K  +  KEGI      L ++G ++   +   DY I   S LH
Sbjct: 17 IEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 68

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 214 QIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGI 273
            I V+T   + + +++E    V  +KE V     +    Q L Y+G ++   KT A Y I
Sbjct: 2   LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKI 61

Query: 274 KNNYVL 279
               VL
Sbjct: 62  LGGSVL 67

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 93.5 bits (233), Expect = 8e-24
 Identities = 24/75 (32%), Positives = 40/75 (53%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S  Q+ VK   G+  +L V     V  +K  + +KL  P+  Q ++F GK L +   L+ 
Sbjct: 6   SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSD 65

Query: 344 YNIQKHSTLHMVLAP 358
           Y+I  +S L++V+ P
Sbjct: 66  YSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 63.5 bits (155), Expect = 4e-13
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
           S M+L VK    +  ++ +      V  +K ++  K  +   Q  L++ GK L  D   +
Sbjct: 6   SGMQLTVKALQGRECSL-QVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKAL-ADGKRL 63

Query: 120 TSMNIKSESIIHLV 133
           +  +I   S ++LV
Sbjct: 64  SDYSIGPNSKLNLV 77

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 18/69 (26%), Positives = 33/69 (47%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLAS 270
           S +Q+ V+        L+V    +V  +K++V+  +++ +  Q L + G  L   K L+ 
Sbjct: 6   SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSD 65

Query: 271 YGIKNNYVL 279
           Y I  N  L
Sbjct: 66  YSIGPNSKL 74

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 17/67 (25%), Positives = 31/67 (46%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           + VKA  G   +L+V     +  +K +V   + V      ++++GK L D K L+ Y + 
Sbjct: 10  LTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIG 69

Query: 202 DECLLEM 208
               L +
Sbjct: 70  PNSKLNL 76

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          V + E +  LK ++  K  +      L F G  L  G+ L DY I  NS L+
Sbjct: 24 VPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLN 75

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 93.1 bits (232), Expect = 8e-24
 Identities = 38/71 (53%), Positives = 52/71 (73%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 347 QKHSTLHMVLA 357
           Q+ STLH+VL 
Sbjct: 62  QRESTLHLVLR 72

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 62.7 bits (153), Expect = 7e-13
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T++ 
Sbjct: 1   MQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD 58

Query: 122 MNIKSESIIHLV 133
            NI+ ES +HLV
Sbjct: 59  YNIQRESTLHLV 70

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 26/67 (38%), Positives = 41/67 (61%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           IFVK  TG+ + LEV+ S  I +VKA +    G+      +I+ GK+LED +TL+ Y+++
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62

Query: 202 DECLLEM 208
            E  L +
Sbjct: 63  RESTLHL 69

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLH 68

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           +QIFV+T   + + LEVE    + +VK  + +   +    Q L +AG +LE  +TL+ Y 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 273 IKNNYVL 279
           I+    L
Sbjct: 61  IQRESTL 67

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 94.5 bits (235), Expect = 8e-24
 Identities = 36/74 (48%), Positives = 50/74 (67%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
             FQIF KT  GKTITL+V+  +T+ +VK K+ DK   P   Q +++AGK+L +   L+ 
Sbjct: 8   GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSD 67

Query: 344 YNIQKHSTLHMVLA 357
           YNIQ+ STLH+VL 
Sbjct: 68  YNIQRESTLHLVLR 81

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 66.8 bits (163), Expect = 8e-14
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 54  FLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLK 113
             H +  E ++F K  T +T T+ E     T+ N+K+ IQ KEGI  DQ  L++ GK L 
Sbjct: 2   HHHHHHGEFQIFAKTLTGKTITL-EVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQL- 59

Query: 114 EDTATMTSMNIKSESIIHLVFC---PKEILSIFVKAATGEIVNLEVKHS 159
           ED  T++  NI+ ES +HLV          +   +    + + L +K S
Sbjct: 60  EDGRTLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKES 108

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLAS 270
              QIF +T   + + LEVE    + +VK  + +   +    Q L +AG +LE  +TL+ 
Sbjct: 8   GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSD 67

Query: 271 YGIKNNYVLD-VL-----PSPFQIFVKTWGGKTITLDVQP 304
           Y I+    L  VL             +    K I L ++ 
Sbjct: 68  YNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKE 107

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           IF K  TG+ + LEV+ S  I +VK+ +    G+      +I+ GK+LED +TL+ Y+++
Sbjct: 12  IFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQ 71

Query: 202 DECLLEMF------PSSIQIFVRTPIEEIVRLEVE 230
            E  L +                  I + + L ++
Sbjct: 72  RESTLHLVLRLRGGSMGGAADEEELIRKAIELSLK 106

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 49.4 bits (118), Expect = 8e-08
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++V+ S+ I N+K+ I  KEGI  D   L +AG +LE GR L DY I+  STLH
Sbjct: 24 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLH 77

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 93.2 bits (232), Expect = 1e-23
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
            I VKT  GK I +D++P + V+ +K ++ +K   P   Q ++++GK++ +    A Y I
Sbjct: 2   LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKI 61

Query: 347 QKHSTLHMVLA 357
              S LH+VLA
Sbjct: 62  LGGSVLHLVLA 72

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 66.6 bits (163), Expect = 4e-14
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M + VK  T +   + +  P   V+ IK  ++ KEGI   Q  L+Y GK +  D  T   
Sbjct: 1   MLIKVKTLTGKEIEI-DIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQM-NDEKTAAD 58

Query: 122 MNIKSESIIHLV 133
             I   S++HLV
Sbjct: 59  YKILGGSVLHLV 70

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 18/67 (26%), Positives = 34/67 (50%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           I VK  TG+ + ++++ +  +  +K  V    G+      +IY GK++ D KT A Y + 
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL 62

Query: 202 DECLLEM 208
              +L +
Sbjct: 63  GGSVLHL 69

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++ ++ ++ +K  +  KEGI      L ++G ++   +   DY I   S LH
Sbjct: 17 IEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLH 68

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 19/66 (28%), Positives = 30/66 (45%)

Query: 214 QIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGI 273
            I V+T   + + +++E    V  +KE V     +    Q L Y+G ++   KT A Y I
Sbjct: 2   LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKI 61

Query: 274 KNNYVL 279
               VL
Sbjct: 62  LGGSVL 67

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 92.8 bits (231), Expect = 1e-23
 Identities = 33/76 (43%), Positives = 51/76 (67%)

Query: 282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVL 341
                Q+F+KT  GKT T++++P +T++++K K+ DK   P   Q ++FAGK+L +   L
Sbjct: 6   HLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 65

Query: 342 ARYNIQKHSTLHMVLA 357
           + YNIQK STLH+VL 
Sbjct: 66  SDYNIQKESTLHLVLR 81

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 63.5 bits (155), Expect = 4e-13
 Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 2/81 (2%)

Query: 53  HFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLL 112
           H  H +L  ++LF+K  T +T TV E  P  T++N+K  IQ KEGI  DQ  L++ GK L
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTV-EMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQL 59

Query: 113 KEDTATMTSMNIKSESIIHLV 133
            ED  T++  NI+ ES +HLV
Sbjct: 60  -EDGRTLSDYNIQKESTLHLV 79

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 57.4 bits (139), Expect = 8e-11
 Identities = 23/78 (29%), Positives = 43/78 (55%)

Query: 131 HLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLE 190
           H      + L +F+K  TG+   +E++ S  I ++KA +    G+      +I+ GK+LE
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE 60

Query: 191 DSKTLAFYDMKDECLLEM 208
           D +TL+ Y+++ E  L +
Sbjct: 61  DGRTLSDYNIQKESTLHL 78

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 17/71 (23%), Positives = 35/71 (49%)

Query: 209 FPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTL 268
               +Q+F++T   +   +E+E    + ++K  + +   +    Q L +AG +LE  +TL
Sbjct: 6   HLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 65

Query: 269 ASYGIKNNYVL 279
           + Y I+    L
Sbjct: 66  SDYNIQKESTL 76

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++++ S+ I+NLKA I  KEGI  D   L FAG +LE GR L DY I+  STLH
Sbjct: 24 VEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 77

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 92.9 bits (231), Expect = 2e-23
 Identities = 39/71 (54%), Positives = 52/71 (73%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 3   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 62

Query: 347 QKHSTLHMVLA 357
           QK STLH+VL 
Sbjct: 63  QKESTLHLVLR 73

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 60.2 bits (146), Expect = 8e-12
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T++ 
Sbjct: 2   MQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD 59

Query: 122 MNIKSESIIHLV 133
            NI+ ES +HLV
Sbjct: 60  YNIQKESTLHLV 71

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 26/67 (38%), Positives = 41/67 (61%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           IFVK  TG+ + LEV+ S  I +VKA +    G+      +I+ GK+LED +TL+ Y+++
Sbjct: 4   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 63

Query: 202 DECLLEM 208
            E  L +
Sbjct: 64  KESTLHL 70

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           +QIFV+T   + + LEVE    + +VK  + +   +    Q L +AG +LE  +TL+ Y 
Sbjct: 2   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 61

Query: 273 IKNNYVL 279
           I+    L
Sbjct: 62  IQKESTL 68

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 49.4 bits (118), Expect = 6e-08
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH
Sbjct: 16 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 69

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 91.7 bits (228), Expect = 7e-23
 Identities = 15/75 (20%), Positives = 31/75 (41%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
              Q+ ++   GK + L V+  +TV  +K +L          Q   F+G+ L +      
Sbjct: 22  YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEE 81

Query: 344 YNIQKHSTLHMVLAP 358
             I K   + ++++ 
Sbjct: 82  LKIPKDYVVQVIVSQ 96

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
            E +L +++ T +   +       TV ++K  +   EG++       + G+ L  D    
Sbjct: 22  YECQLRLRLSTGKDLKL-VVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPL-TDKMKF 79

Query: 120 TSMNIKSESIIHLV 133
             + I  + ++ ++
Sbjct: 80  EELKIPKDYVVQVI 93

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 56.7 bits (137), Expect = 2e-10
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 189 LEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDL 248
           +E+   +   D+ +           Q+ +R    + ++L V     V  +K  +     +
Sbjct: 2   IEEKSDIETLDIPEPP--PNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGV 59

Query: 249 SLGNQDLFYAGTKLEACKTLASYGIKNNYVLD-VLPSP 285
             G+Q  F++G  L          I  +YV+  ++  P
Sbjct: 60  EPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          + V+ ++ + ++K  +H  EG+       FF+G  L       +  I  +  + 
Sbjct: 38 LVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQ 91

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           + ++ +TG+ + L V+ +  +  +K  + +  GV        + G+ L D        + 
Sbjct: 26  LRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIP 85

Query: 202 DECLLEMFPSSIQIFVRTPIEEIVRLE 228
            +         +Q+ V  P++    +E
Sbjct: 86  KD-------YVVQVIVSQPVQNPTPVE 105

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 91.4 bits (227), Expect = 7e-23
 Identities = 39/71 (54%), Positives = 52/71 (73%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 347 QKHSTLHMVLA 357
           QK STLH+VL 
Sbjct: 62  QKESTLHLVLR 72

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 59.4 bits (144), Expect = 2e-11
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T++ 
Sbjct: 1   MQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD 58

Query: 122 MNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSF 160
            NI+ ES +HLV   +        +       LE  H  
Sbjct: 59  YNIQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHHHHH 97

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 55.6 bits (134), Expect = 5e-10
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           +QIFV+T   + + LEVE    + +VK  + +   +    Q L +AG +LE  +TL+ Y 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 273 IKNNYVLDV---LPSPFQIFVKTWGGKTITLDVQPYN 306
           I+    L +   L         +       L+   ++
Sbjct: 61  IQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHHHHH 97

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 26/67 (38%), Positives = 41/67 (61%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           IFVK  TG+ + LEV+ S  I +VKA +    G+      +I+ GK+LED +TL+ Y+++
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62

Query: 202 DECLLEM 208
            E  L +
Sbjct: 63  KESTLHL 69

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 91.0 bits (226), Expect = 8e-23
 Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
               Q+FV+    +  T +V    TV  +K  +          Q ++ AG  L +   L 
Sbjct: 17  RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74

Query: 343 RYNIQKHSTLHMVLA 357
           +  ++  +TL +   
Sbjct: 75  QCGVEALTTLEVAGR 89

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             M+LFV+    +  T  E     TV  IK  +   EGI  +   ++  G  L ED AT+
Sbjct: 18  GSMQLFVR--AQELHTF-EVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPL-EDEATL 73

Query: 120 TSMNIKSESIIHLV 133
               +++ + + + 
Sbjct: 74  GQCGVEALTTLEVA 87

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 54.8 bits (132), Expect = 8e-10
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 135 CPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKT 194
            P+  + +FV+    E+   EV     +  +KA V S+ G++  D +++  G  LED  T
Sbjct: 15  VPRGSMQLFVR--AQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEAT 72

Query: 195 LAFYDMKDECLLEM 208
           L    ++    LE+
Sbjct: 73  LGQCGVEALTTLEV 86

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          V   E +  +KA +   EGI+ +   +  AG  LE    L   G+   +TL 
Sbjct: 34 VTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLE 85

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
             S+Q+FVR   +E+   EV     V  +K  VA++  ++  +Q +  AG  LE   TL 
Sbjct: 17  RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLG 74

Query: 270 SYGIKNNYVLDV 281
             G++    L+V
Sbjct: 75  QCGVEALTTLEV 86

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 90.1 bits (224), Expect = 1e-22
 Identities = 20/76 (26%), Positives = 34/76 (44%)

Query: 282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVL 341
           +  P  I V+   G++ T +V+   TV  +K ++         L  + F GK L +   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 342 ARYNIQKHSTLHMVLA 357
             Y ++  ST+ M L 
Sbjct: 61  GEYGLKPLSTVFMNLR 76

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 61.3 bits (149), Expect = 3e-12
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             + + V+    +++T  E     TV ++K  +   EG+Q D F L ++GK L ED   +
Sbjct: 3   EPLSILVRNNKGRSSTY-EVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQLPL 60

Query: 120 TSMNIKSESIIHLV 133
               +K  S + + 
Sbjct: 61  GEYGLKPLSTVFMN 74

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 54.7 bits (132), Expect = 7e-10
 Identities = 21/69 (30%), Positives = 31/69 (44%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           LSI V+   G     EV+ +  +  +K  V  + GV      + +EGK LED   L  Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 200 MKDECLLEM 208
           +K    + M
Sbjct: 65  LKPLSTVFM 73

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLAS 270
             + I VR         EV +   V  +K+ V+ +  +      L + G  LE    L  
Sbjct: 3   EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGE 62

Query: 271 YGIKNNYVLDV---LPSPFQIFVKTW 293
           YG+K    + +   L    +      
Sbjct: 63  YGLKPLSTVFMNLRLRGGLEHHHHHH 88

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
           +V+ ++ + +LK  +   EG+ +D+  L F G  LE    L +YG++  ST+ 
Sbjct: 19 YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVF 72

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 89.7 bits (223), Expect = 2e-22
 Identities = 20/76 (26%), Positives = 34/76 (44%)

Query: 282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVL 341
           +  P  I V+   G++ T +V+   TV  +K ++         L  + F GK L +   L
Sbjct: 1   MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60

Query: 342 ARYNIQKHSTLHMVLA 357
             Y ++  ST+ M L 
Sbjct: 61  GEYGLKPLSTVFMNLR 76

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             + + V+    +++T  E     TV ++K  +   EG+Q D F L ++GK L ED   +
Sbjct: 3   EPLSILVRNNKGRSSTY-EVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQLPL 60

Query: 120 TSMNIKSESIIHLV 133
               +K  S + + 
Sbjct: 61  GEYGLKPLSTVFMN 74

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 21/69 (30%), Positives = 31/69 (44%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           LSI V+   G     EV+ +  +  +K  V  + GV      + +EGK LED   L  Y 
Sbjct: 5   LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 200 MKDECLLEM 208
           +K    + M
Sbjct: 65  LKPLSTVFM 73

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
           +V+ ++ + +LK  +   EG+ +D+  L F G  LE    L +YG++  ST+ 
Sbjct: 19 YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVF 72

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 16/69 (23%), Positives = 26/69 (37%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLAS 270
             + I VR         EV +   V  +K+ V+ +  +      L + G  LE    L  
Sbjct: 3   EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGE 62

Query: 271 YGIKNNYVL 279
           YG+K    +
Sbjct: 63  YGLKPLSTV 71

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 87.8 bits (218), Expect = 1e-21
 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 2/78 (2%)

Query: 283 PSPFQIFVKTW-GGKTITL-DVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHV 340
            S   I V+T  G KT T+ DV    T+++++ +++         Q + + GK+L   + 
Sbjct: 5   SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYT 64

Query: 341 LARYNIQKHSTLHMVLAP 358
           L  Y++  +  + +++ P
Sbjct: 65  LFDYDVGLNDIIQLLVRP 82

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 63.2 bits (154), Expect = 6e-13
 Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 60  SEMKLFVKIPT-NQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTAT 118
           S M + V+    ++T T+ +     T++ ++  +     ++ +   L Y GK L E+  T
Sbjct: 6   SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQL-ENGYT 64

Query: 119 MTSMNIKSESIIHLV 133
           +   ++    II L+
Sbjct: 65  LFDYDVGLNDIIQLL 79

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          V +   I+ L+  +     +  +   LF+ G +LE G  L DY +  N  + 
Sbjct: 26 VSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQ 77

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 210 PSSIQIFVRTP--IEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKT 267
            S + I VRT    +     +V     + +++E V  + D+    Q LFY G +LE   T
Sbjct: 5   SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYT 64

Query: 268 LASYGIKNNYVL 279
           L  Y +  N ++
Sbjct: 65  LFDYDVGLNDII 76

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 142 IFVKAATG--EIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           I V+   G       +V     I +++  V ++  V      + Y GK+LE+  TL  YD
Sbjct: 10  IQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYD 69

Query: 200 MKDECLLEM 208
           +    ++++
Sbjct: 70  VGLNDIIQL 78

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 85.8 bits (213), Expect = 5e-21
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
           P   ++ VKT   +T T  V     V++ K  +   +  P   Q +++ G+ L ++  L 
Sbjct: 15  PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQ 74

Query: 343 RYNIQKHSTLHMVL 356
            YN+     +H+V 
Sbjct: 75  EYNVGGK-VIHLVE 87

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 62.7 bits (153), Expect = 8e-13
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 45  GIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFT 104
           G+  N +     +    +++ VK   +QT T         V+  K  I     I S++  
Sbjct: 1   GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTF-IVGAQMNVKEFKEHIAASVSIPSEKQR 59

Query: 105 LVYDGKLLKEDTATMTSMNIKSESIIHLV 133
           L+Y G++L +D   +   N+    +IHLV
Sbjct: 60  LIYQGRVL-QDDKKLQEYNVG-GKVIHLV 86

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 14/64 (21%), Positives = 30/64 (46%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           L + VK    +     V     +++ K  + + V + +    +IY+G+ L+D K L  Y+
Sbjct: 18  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 77

Query: 200 MKDE 203
           +  +
Sbjct: 78  VGGK 81

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 17/67 (25%), Positives = 30/67 (44%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
           P S+++ V+T   +     V   + V++ KE +A  + +    Q L Y G  L+  K L 
Sbjct: 15  PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQ 74

Query: 270 SYGIKNN 276
            Y +   
Sbjct: 75  EYNVGGK 81

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          V     +K  K  I     I  +   L + G  L+  + L +Y +     +H
Sbjct: 34 VGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIH 84

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 85.4 bits (212), Expect = 9e-21
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
           P   ++ VKT   +T T  V     V++ K  +   +  P   Q +++ G+ L ++  L 
Sbjct: 3   PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQ 62

Query: 343 RYNIQKHSTLHMVL 356
            YN+     +H+V 
Sbjct: 63  EYNVGGK-VIHLVE 75

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             +++ VK   +QT T         V+  K  I     I S++  L+Y G++L +D   +
Sbjct: 4   DSLEVLVKTLDSQTRTF-IVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVL-QDDKKL 61

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATG 149
              N+    +IHLV        +   A++G
Sbjct: 62  QEYNVG-GKVIHLVERAPPQTHLPSGASSG 90

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 14/64 (21%), Positives = 30/64 (46%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           L + VK    +     V     +++ K  + + V + +    +IY+G+ L+D K L  Y+
Sbjct: 6   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65

Query: 200 MKDE 203
           +  +
Sbjct: 66  VGGK 69

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 17/67 (25%), Positives = 30/67 (44%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
           P S+++ V+T   +     V   + V++ KE +A  + +    Q L Y G  L+  K L 
Sbjct: 3   PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQ 62

Query: 270 SYGIKNN 276
            Y +   
Sbjct: 63  EYNVGGK 69

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          V     +K  K  I     I  +   L + G  L+  + L +Y +     +H
Sbjct: 22 VGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIH 72

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 85.9 bits (212), Expect = 8e-20
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           Q+ VKT  G+T    ++   +V D+K ++   +   + + ++V  G             +
Sbjct: 2   QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNT-----ELV 56

Query: 347 QKHSTLHMVLAP 358
               T ++ L  
Sbjct: 57  TDDVTYYLSLKL 68

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 64.4 bits (156), Expect = 2e-12
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 7/98 (7%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M++ VK    +T          +V ++K+ I    G + D  TLV +G +   +T  +  
Sbjct: 1   MQVQVKTLEGETKIY-TLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIA-PNTELV-- 56

Query: 122 MNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVKHS 159
                +   +L            K +       + +H 
Sbjct: 57  ---TDDVTYYLSLKLLGGKKKKKKKSYTTKKKTKHRHV 91

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 8/58 (13%), Positives = 23/58 (39%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           + VK   GE     ++   ++ D+K+ +   +G       ++  G    +++ +    
Sbjct: 3   VQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDDV 60

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 45.1 bits (106), Expect = 8e-06
 Identities = 10/58 (17%), Positives = 20/58 (34%)

Query: 214 QIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASY 271
           Q+ V+T   E     +E    V D+K  ++  +   +    L   G      + +   
Sbjct: 2   QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVTDD 59

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 4/95 (4%)

Query: 3   VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNSTLHFLHQNLSEM 62
           +++   + +LK+ I    G   D+  L   G       L    + ++ T +   + L   
Sbjct: 17  LEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTEL----VTDDVTYYLSLKLLGGK 72

Query: 63  KLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG 97
           K   K              +  +  +        G
Sbjct: 73  KKKKKKSYTTKKKTKHRHVHTKLGALAFYKLENNG 107

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 85.0 bits (210), Expect = 1e-19
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 12/151 (7%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+  +T+ +VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 347 QKHSTLHMVLAPSSR-------IIELPLIFIDPSISLSISISEVKEMAKVKFQAAVKELL 399
           QK STLH+VL            + +  +      I   + +   +   K++    V +L 
Sbjct: 62  QKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPV-DLT 120

Query: 400 VDQVALQD---DRTLADY-GMDLSEKVVLVF 426
                L D     +L+D  G+ LS +   +F
Sbjct: 121 FGAKYLLDIIKGSSLSDRVGIRLSSEAPALF 151

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 73.5 bits (180), Expect = 1e-15
 Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 17/157 (10%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           +QIFV+T   + + LEVE    + +VK  + +   +    Q L +AG +LE  +TL+ Y 
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 273 IKNNYVLDVL------PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ 326
           I+    L ++            FV      + ++ ++P+  ++  +  +  ++  P+ L 
Sbjct: 61  IQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDL- 119

Query: 327 SIVFAGKRLFENHVLAR-------YNIQKHSTLHMVL 356
              F  K L  + +            +   +      
Sbjct: 120 --TFGAKYL-LDIIKGSSLSDRVGIRLSSEAPALFQF 153

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 11/142 (7%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHF-LHQN 58
           ++V+ S+ I N+K+ I  KEGI  D   L FAG +LE GR L DY I+  STLH  L   
Sbjct: 15  LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74

Query: 59  LSEMKLFVKIPTNQTAT-VVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTA 117
               +    +      +  V   P+  +++ +T I+++     D   L +  K L +   
Sbjct: 75  GGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD---LTFGAKYLLDIIK 131

Query: 118 TMT-----SMNIKSESIIHLVF 134
             +      + + SE+     F
Sbjct: 132 GSSLSDRVGIRLSSEAPALFQF 153

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 8/133 (6%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M++FVK  T +T T+ E     T+ N+K+ IQ KEGI  DQ  L++ GK L ED  T++ 
Sbjct: 1   MQIFVKTLTGKTITL-EVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD 58

Query: 122 MNIKSESIIHLV---FCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAA 178
            NI+ ES +HLV            FV        ++ +K    +   +  +   +     
Sbjct: 59  YNIQKESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD 118

Query: 179 DHIMIYEGKKLED 191
              + +  K L D
Sbjct: 119 ---LTFGAKYLLD 128

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           IFVK  TG+ + LEV+ S  I +VK+ +    G+      +I+ GK+LED +TL+ Y+++
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62

Query: 202 DECLLEM------FPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDL 255
            E  L +             FV         + ++  + +   +  +   +D  +   DL
Sbjct: 63  KESTLHLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPV---DL 119

Query: 256 FYAGTKLE 263
            +    L 
Sbjct: 120 TFGAKYLL 127

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 82.0 bits (203), Expect = 1e-19
 Identities = 14/73 (19%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 286 FQIFVKTWGGKTIT--LDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
             I V+T  G+       +     V++++ K+ +       LQ + + GK++ + H L  
Sbjct: 3   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 62

Query: 344 YNIQKHSTLHMVL 356
           Y ++ + T+ +++
Sbjct: 63  YEVRLNDTIQLLV 75

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 62  MKLFVKIPTNQTATVVEAM-PYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMT 120
           M + V+    +    V+++     V+ ++  IQ    ++     L Y GK + ED  T+ 
Sbjct: 3   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQM-EDGHTLF 61

Query: 121 SMNIKSESIIHLV 133
              ++    I L+
Sbjct: 62  DYEVRLNDTIQLL 74

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          + +   ++ L+  I     +   +  LF+ G ++E G  L DY +R N T+ 
Sbjct: 21 LSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQ 72

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 212 SIQIFVRTPI--EEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
           S+ I VRT    +      +  L  V +++  +  +  +  G Q LFY G ++E   TL 
Sbjct: 2   SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLF 61

Query: 270 SYGIKNNYVL 279
            Y ++ N  +
Sbjct: 62  DYEVRLNDTI 71

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 142 IFVKAATGE--IVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           I V+   G        +     + +++  +  +  V      + Y GK++ED  TL  Y+
Sbjct: 5   IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYE 64

Query: 200 MKDECLLEM 208
           ++    +++
Sbjct: 65  VRLNDTIQL 73

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 81.9 bits (203), Expect = 1e-19
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN-HVL 341
            S  +  V+   G +  L+V   +T+  VK K+      P+  Q+++  G  +      +
Sbjct: 8   HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTV 67

Query: 342 ARYNIQKHSTLHMVLA 357
            +  I   S + + ++
Sbjct: 68  EQCQIVPTSDIQLEVS 83

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 56  HQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKED 115
           H + S MK  V+     +  + E     T+  +K  I+  + I   + TL+ DG ++  +
Sbjct: 5   HHHHSHMKFLVENLNGSSFEL-EVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILRE 63

Query: 116 TATMTSMNIKSESIIHLV 133
             T+    I   S I L 
Sbjct: 64  DLTVEQCQIVPTSDIQLE 81

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 48.4 bits (116), Expect = 9e-08
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKK-LEDSKTLAFYDM 200
             V+   G    LEV +   +  VK  +     +  +   +I +G   L +  T+    +
Sbjct: 13  FLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQI 72

Query: 201 KDECLLEMFPSS 212
                +++  SS
Sbjct: 73  VPTSDIQLEVSS 84

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTK-LEACKTL 268
            S ++  V         LEV+    +  VK+ +     + +  Q L   G   L    T+
Sbjct: 8   HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTV 67

Query: 269 ASYGIKNNYVL 279
               I     +
Sbjct: 68  EQCQIVPTSDI 78

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 9/53 (16%), Positives = 15/53 (28%), Gaps = 2/53 (3%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAG-DRLEAGR-LVDYGIRNNSTLH 53
          V   + +  +K  I   + I      L   G   L     +    I   S + 
Sbjct: 27 VDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQ 79

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 83.5 bits (206), Expect = 6e-19
 Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 2   KVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNSTLHFLHQNLSE 61
           K    +   N +  +  K G +    D+ +      + R+    + ++  L +   +   
Sbjct: 50  KSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRNSDRI----LYSSDWLIYKTTDHYG 105

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
            ++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L ED  T++ 
Sbjct: 106 GQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD 163

Query: 122 MNIKSESIIHLVFCPKEILSIFVK 145
            NI+ ES +HLV   +     F K
Sbjct: 164 YNIQKESTLHLVLRLRGGGQTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 82.3 bits (203), Expect = 1e-18
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 2/123 (1%)

Query: 234 VVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVKTW 293
           +  + +  +      +    D+ Y      + + L S                QIFVKT 
Sbjct: 56  IFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSS--DWLIYKTTDHYGGQIFVKTL 113

Query: 294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLH 353
            GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNIQK STLH
Sbjct: 114 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 173

Query: 354 MVL 356
           +VL
Sbjct: 174 LVL 176

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 67.3 bits (164), Expect = 2e-13
 Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 9/138 (6%)

Query: 84  TVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIF 143
              N +  +  K G    +  + Y       D        + S   +           IF
Sbjct: 56  IFSNREGKLPGKSGRTWREADINYTSGFRNSDR------ILYSSDWLIYKTTDHYGGQIF 109

Query: 144 VKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDE 203
           VK  TG+ + LEV+ S  I +VKA +    G+      +I+ GK+LED +TL+ Y+++ E
Sbjct: 110 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 169

Query: 204 CLLEM---FPSSIQIFVR 218
             L +        Q F +
Sbjct: 170 STLHLVLRLRGGGQTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 55.0 bits (132), Expect = 5e-09
 Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 5/133 (3%)

Query: 162 IRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPI 221
             + +  +    G +  +  + Y        + L   D              QIFV+T  
Sbjct: 57  FSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWLI--YKTTDHYGGQIFVKTLT 114

Query: 222 EEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV 281
            + + LEVE    + +VK  + +   +    Q L +AG +LE  +TL+ Y I+    L +
Sbjct: 115 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 174

Query: 282 ---LPSPFQIFVK 291
              L    Q F K
Sbjct: 175 VLRLRGGGQTFTK 187

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 54.2 bits (130), Expect = 8e-09
 Identities = 27/140 (19%), Positives = 47/140 (33%), Gaps = 10/140 (7%)

Query: 289 FVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQK 348
                 GK+I  D        + + KL  K         I +       + +L   +   
Sbjct: 43  LADVAPGKSIGGD-----IFSNREGKLPGKSGRTWREADINYTSGFRNSDRILYSSDWLI 97

Query: 349 HST-LHMVLAPSSRIIELPLIFIDPSISLSISISEVKEM--AKVKFQAAVKELLVDQVAL 405
           + T  H       + +    I ++  +  S +I  VK     K       + L+     L
Sbjct: 98  YKTTDHYGGQIFVKTLTGKTITLE--VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 155

Query: 406 QDDRTLADYGMDLSEKVVLV 425
           +D RTL+DY +     + LV
Sbjct: 156 EDGRTLSDYNIQKESTLHLV 175

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 53.5 bits (128), Expect = 1e-08
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQNL 59
           ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH + +  
Sbjct: 120 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 179

Query: 60  SEMKLFVKI 68
              + F KI
Sbjct: 180 GGGQTFTKI 188

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 81.6 bits (201), Expect = 6e-19
 Identities = 38/70 (54%), Positives = 50/70 (71%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+  +T+ +VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 347 QKHSTLHMVL 356
           QK STLH+VL
Sbjct: 62  QKESTLHLVL 71

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M++FVK  T +T T+ E     T+ N+K+ IQ KEGI  DQ  L++ GK L ED  T++ 
Sbjct: 1   MQIFVKTLTGKTITL-EVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSD 58

Query: 122 MNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVK 157
            NI+ ES +HLV   +  +      A     N +  
Sbjct: 59  YNIQKESTLHLVLRLRGGIIEPSLKALASKYNCDKS 94

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 55.8 bits (134), Expect = 7e-10
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           IFVK  TG+ + LEV+ S  I +VK+ +    G+      +I+ GK+LED +TL+ Y+++
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62

Query: 202 DEC 204
            E 
Sbjct: 63  KES 65

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 47.7 bits (113), Expect = 5e-07
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           +QIFV+T   + + LEVE    + +VK  + +   +    Q L +AG +LE  +TL+ Y 
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 273 IKNN 276
           I+  
Sbjct: 61  IQKE 64

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 27/54 (50%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFL 55
          V+ S+ I N+K+ I  KEGI  D   L FAG +LE GR L DY I+  STLH +
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 80.2 bits (198), Expect = 1e-18
 Identities = 15/76 (19%), Positives = 34/76 (44%)

Query: 282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVL 341
           +P+          G+ +   +   + V  +KVK+ +    P   Q + + G  + +++ L
Sbjct: 32  VPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSL 91

Query: 342 ARYNIQKHSTLHMVLA 357
           A YN+   + +H+ L 
Sbjct: 92  AYYNMASGAVIHLALK 107

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 54  FLHQNLSEMKLFVKIPTNQTATV---------VEAMPYHTVQNIKTMIQVKEGIQSDQFT 104
           FL +N   + + V++P  Q  T                  V  IK  I    G+ + +  
Sbjct: 18  FLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQK 77

Query: 105 LVYDGKLLKEDTATMTSMNIKSESIIHLV 133
           L Y+G  + +D+ ++   N+ S ++IHL 
Sbjct: 78  LQYEGIFI-KDSNSLAYYNMASGAVIHLA 105

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 52.9 bits (127), Expect = 6e-09
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 133 VFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDS 192
           V  P            G+ +   +  +  +  +K  +    G+ A    + YEG  ++DS
Sbjct: 30  VQVPNMQ-DKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS 88

Query: 193 KTLAFYDMKDECLLEM 208
            +LA+Y+M    ++ +
Sbjct: 89  NSLAYYNMASGAVIHL 104

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 3   VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
           +  ++ +  +K  IH   G+      L + G  ++    L  Y + + + +H
Sbjct: 52  LPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 206 LEMFPSSIQIFVRTPIEE----------IVRLEVEVLIVVRDVKEIVANIIDLSLGNQDL 255
           L      + I V+ P  +           +   + +   V  +K  +     +  G Q L
Sbjct: 19  LRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKL 78

Query: 256 FYAGTKLEACKTLASYGIKNNYVL 279
            Y G  ++   +LA Y + +  V+
Sbjct: 79  QYEGIFIKDSNSLAYYNMASGAVI 102

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 261 KLEACKTLASYGIKNNYVLDVLPSPFQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKL 319
                  ++ Y I     L        + +    G+    ++V P +TV   K  +    
Sbjct: 3   HHHHHHPMSDYDIPTTENLY-FQGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKAN 61

Query: 320 QTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL 356
             P+  Q ++++GK L ++  +  Y+IQ   ++H+V 
Sbjct: 62  GIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVK 98

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 76.2 bits (188), Expect = 2e-17
 Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 35  RLEAGR-LVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQ 93
                  + DY I     L+F       M L + I + Q    V   P  TV   K  I 
Sbjct: 3   HHHHHHPMSDYDIPTTENLYFQ----GAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAIN 58

Query: 94  VKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133
              GI      L+Y GK+L +D  T+ S +I+    +HLV
Sbjct: 59  KANGIPVANQRLIYSGKIL-KDDQTVESYHIQDGHSVHLV 97

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 187 KKLEDSKTLAFYDMKDECLLEM-FPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANI 245
           K       ++ YD+     L      S+ I +++  ++   + V     V   KE +   
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYFQGAMSLNIHIKSGQDKWE-VNVAPESTVLQFKEAINKA 60

Query: 246 IDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVL 279
             + + NQ L Y+G  L+  +T+ SY I++ + +
Sbjct: 61  NGIPVANQRLIYSGKILKDDQTVESYHIQDGHSV 94

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 5/94 (5%)

Query: 114 EDTATMTSMNIKSESIIHLVFCPKEILSIFVKAATG-EIVNLEVKHSFAIRDVKAIVGSV 172
                M+  +I +   ++     +  +S+ +   +G +   + V     +   K  +   
Sbjct: 5   HHHHPMSDYDIPTTENLYF----QGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKA 60

Query: 173 VGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLL 206
            G+  A+  +IY GK L+D +T+  Y ++D   +
Sbjct: 61  NGIPVANQRLIYSGKILKDDQTVESYHIQDGHSV 94

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          V     +   K  I+   GI      L ++G  L+  + +  Y I++  ++H
Sbjct: 44 VAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVH 95

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 333 KRLFENHVLARYNIQKHSTLHMVLAPSSRIIELPL-IFIDPSISLSISISEVKEMAKVKF 391
           K    +H ++ Y+I     L+   A S  I         + +++   ++ + KE      
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYFQGAMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKAN 61

Query: 392 QAAVKE--LLVDQVALQDDRTLADYGMDLSEKVVLV 425
              V    L+     L+DD+T+  Y +     V LV
Sbjct: 62  GIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 97

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
           P   ++ VKT   K     V    T+Q +K ++  + +       ++FAGK L +   LA
Sbjct: 15  PHLIKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLA 73

Query: 343 RYNIQKHSTLHMVLAPSSR 361
           +  ++   T+H+V+    R
Sbjct: 74  QCGVRDGLTVHLVIKRQHR 92

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             +K+ VK P ++    V      T+Q +K  I  +     DQ  L++ GK+LK D  ++
Sbjct: 16  HLIKVTVKTPKDKEDFSVT--DTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSL 72

Query: 120 TSMNIKSESIIHLV 133
               ++    +HLV
Sbjct: 73  AQCGVRDGLTVHLV 86

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 136 PKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTL 195
              ++ + VK    +     V  +  I+ +K  +           ++I+ GK L+D  +L
Sbjct: 14  DPHLIKVTVKTPKDKED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSL 72

Query: 196 AFYDMKDE 203
           A   ++D 
Sbjct: 73  AQCGVRDG 80

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
           P  I++ V+TP ++     V     ++ +KE ++           L +AG  L+   +LA
Sbjct: 15  PHLIKVTVKTPKDKED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLA 73

Query: 270 SYGIKNNYVL 279
             G+++   +
Sbjct: 74  QCGVRDGLTV 83

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHF 54
          V  +  I+ LK  I  +     D   L FAG  L+    L   G+R+  T+H 
Sbjct: 33 VTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHL 85

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK---LQTPLHLQSIVFAGKRLFENHVLAR 343
           Q+ +KT   +T  +D+ P  TV+ +K K+  +      P+  Q +++AGK L ++  L  
Sbjct: 2   QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKE 61

Query: 344 YNIQKHSTLHMVLA 357
           Y I + + + +++ 
Sbjct: 62  YKIDEKNFVVVMVT 75

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG---IQSDQFTLVYDGKLLKEDTAT 118
           M++ +K    QT  + +  P  TV+ +K  I+ ++G          L+Y GK+L  D   
Sbjct: 1   MQVTLKTLQQQTFKI-DIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKIL-NDDTA 58

Query: 119 MTSMNIKSESIIHLV 133
           +    I  ++ + ++
Sbjct: 59  LKEYKIDEKNFVVVM 73

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSA--ADHIM-IYEGKKLEDSKTLAFY 198
           + +K    +   +++     ++ +K  + S  G  A        IY GK L D   L  Y
Sbjct: 3   VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62

Query: 199 DMKDECLL 206
            + ++  +
Sbjct: 63  KIDEKNFV 70

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVAN---IIDLSLGNQDLFYAGTKLEACKTLA 269
           +Q+ ++T  ++  +++++    V+ +KE + +        +  Q L YAG  L     L 
Sbjct: 1   MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60

Query: 270 SYGIKNNYVL 279
            Y I     +
Sbjct: 61  EYKIDEKNFV 70

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICD---LFFAGDRLEAGR-LVDYGIRNNSTLHF 54
          +   E +K LK  I  ++G          L +AG  L     L +Y I   + +  
Sbjct: 17 IDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVV 72

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 74.5 bits (184), Expect = 4e-17
 Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 287 QIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            + +    G+    ++V P +TV   K  +      P+  Q ++++GK L ++  +  Y+
Sbjct: 4   SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 63

Query: 346 IQKHSTLHMVLAP 358
           IQ   ++H+V + 
Sbjct: 64  IQDGHSVHLVKSQ 76

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 61  EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMT 120
           +M L + I + Q    V   P  TV   K  I    GI      L+Y GK+L +D  T+ 
Sbjct: 2   DMSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKIL-KDDQTVE 60

Query: 121 SMNIKSESIIHLV 133
           S +I+    +HLV
Sbjct: 61  SYHIQDGHSVHLV 73

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 46.4 bits (111), Expect = 4e-07
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 141 SIFVKAATG-EIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           S+ +   +G +   + V     +   K  +    G+  A+  +IY GK L+D +T+  Y 
Sbjct: 4   SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 63

Query: 200 MKDECLL 206
           ++D   +
Sbjct: 64  IQDGHSV 70

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          V     +   K  I+   GI      L ++G  L+  + +  Y I++  ++H
Sbjct: 20 VAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVH 71

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 206 LEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEAC 265
           L+M   S+ I +++  ++   + V     V   KE +     + + NQ L Y+G  L+  
Sbjct: 1   LDM---SLNIHIKSGQDKWE-VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD 56

Query: 266 KTLASYGIKNNYVL 279
           +T+ SY I++ + +
Sbjct: 57  QTVESYHIQDGHSV 70

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 75.1 bits (185), Expect = 5e-17
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
           P   ++ VKT   K     V    T+Q +K ++  + +       ++FAGK L +   LA
Sbjct: 20  PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLA 78

Query: 343 RYNIQKHSTLHMVLAPSSR 361
           +  ++   T+H+V+    R
Sbjct: 79  QCGVRDGLTVHLVIKRQHR 97

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 68.9 bits (169), Expect = 7e-15
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             +K+ VK P ++    V      T+Q +K  I  +     DQ  L++ GK+LK D  ++
Sbjct: 21  HLIKVTVKTPKDKEDFSVT--DTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSL 77

Query: 120 TSMNIKSESIIHLV 133
               ++    +HLV
Sbjct: 78  AQCGVRDGLTVHLV 91

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 138 EILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAF 197
            ++ + VK    +     V  +  I+ +K  +           ++I+ GK L+D  +LA 
Sbjct: 21  HLIKVTVKTPKDKED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQ 79

Query: 198 YDMKDE 203
             ++D 
Sbjct: 80  CGVRDG 85

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
           P  I++ V+TP ++     V     ++ +KE ++           L +AG  L+   +LA
Sbjct: 20  PHLIKVTVKTPKDKED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLA 78

Query: 270 SYGIKNNYVL 279
             G+++   +
Sbjct: 79  QCGVRDGLTV 88

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHF 54
          V  +  I+ LK  I  +     D   L FAG  L+    L   G+R+  T+H 
Sbjct: 38 VTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHL 90

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 75.1 bits (185), Expect = 6e-17
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 1/79 (1%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
           P   ++ VKT   K     V   ++VQ  K ++  + ++      ++FAGK L +   L+
Sbjct: 23  PKIMKVTVKTPKEK-EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLS 81

Query: 343 RYNIQKHSTLHMVLAPSSR 361
           ++ I    T+H+V+   +R
Sbjct: 82  QHGIHDGLTVHLVIKTQNR 100

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             MK+ VK P  +    V      +VQ  K  I  +    +DQ  L++ GK+LK D  T+
Sbjct: 24  KIMKVTVKTPKEKEEFAVP--ENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK-DQDTL 80

Query: 120 TSMNIKSESIIHLV 133
           +   I     +HLV
Sbjct: 81  SQHGIHDGLTVHLV 94

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 138 EILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAF 197
           +I+ + VK    +     V  + +++  K  +           ++I+ GK L+D  TL+ 
Sbjct: 24  KIMKVTVKTPKEKEE-FAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQ 82

Query: 198 YDMKDE 203
           + + D 
Sbjct: 83  HGIHDG 88

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
           P  +++ V+TP E+     V     V+  KE ++           L +AG  L+   TL+
Sbjct: 23  PKIMKVTVKTPKEKEE-FAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLS 81

Query: 270 SYGIKNNYVL 279
            +GI +   +
Sbjct: 82  QHGIHDGLTV 91

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          V ++  ++  K  I  +     D   L FAG  L+    L  +GI +  T+H
Sbjct: 41 VPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVH 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 74.3 bits (183), Expect = 9e-17
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
               ++ VKT         +   + V+  K ++   L        ++F GK L +  +L+
Sbjct: 15  SRIIRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILS 73

Query: 343 RYNIQKHSTLHMVLAPSSR 361
           +  I   ST+H+V+   S 
Sbjct: 74  QRGILDGSTVHVVVRSHSG 92

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 68.2 bits (167), Expect = 1e-14
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             +++ VK P +     +       V+  K  I       +D+  L++ GK+L  D   +
Sbjct: 16  RIIRVSVKTPQDCHEFFLA--ENSNVRRFKKQISKYLHCNADRLVLIFTGKIL-RDQDIL 72

Query: 120 TSMNIKSESIIHLV 133
           +   I   S +H+V
Sbjct: 73  SQRGILDGSTVHVV 86

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 136 PKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTL 195
              I+ + VK          +  +  +R  K  +   +  +A   ++I+ GK L D   L
Sbjct: 14  SSRIIRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDIL 72

Query: 196 AFYDMKDE 203
           +   + D 
Sbjct: 73  SQRGILDG 80

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
              I++ V+TP +      +     VR  K+ ++  +  +     L + G  L     L+
Sbjct: 15  SRIIRVSVKTPQDCHE-FFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILS 73

Query: 270 SYGIKNNYVL 279
             GI +   +
Sbjct: 74  QRGILDGSTV 83

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          + ++  ++  K  I      + D   L F G  L     L   GI + ST+H
Sbjct: 33 LAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVH 84

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 12/71 (16%), Positives = 35/71 (49%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
            +  K +  + + LD++P NT+ + K KL   +        ++++GK L ++  ++   +
Sbjct: 3   SLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGL 62

Query: 347 QKHSTLHMVLA 357
           +    +  +++
Sbjct: 63  KDGDQVVFMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           + L  K    +   + +  P +T+   KT +      +  Q  L+Y GK+L+ D+ T++ 
Sbjct: 2   VSLTFKNFKKEKVPL-DLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQ-DSKTVSE 59

Query: 122 MNIKSESIIHLV 133
             +K    +  +
Sbjct: 60  CGLKDGDQVVFM 71

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 19/65 (29%), Positives = 34/65 (52%)

Query: 139 ILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFY 198
           ++S+  K    E V L+++ S  I + K  +   +    +   +IY GK L+DSKT++  
Sbjct: 1   MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSEC 60

Query: 199 DMKDE 203
            +KD 
Sbjct: 61  GLKDG 65

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 15/67 (22%), Positives = 31/67 (46%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           + +  +   +E V L++E    + + K  +A  I        L Y+G  L+  KT++  G
Sbjct: 2   VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 273 IKNNYVL 279
           +K+   +
Sbjct: 62  LKDGDQV 68

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK---LQTPLHLQSIVFAGKRLFEN 338
           +P    I +KT   +T  + ++P  TV+ +K K+  +      P+  Q +++AGK L ++
Sbjct: 2   IPMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD 61

Query: 339 HVLARYNIQKHSTLHMVLA 357
             +  Y I + + + +++ 
Sbjct: 62  VPIRDYRIDEKNFVVVMVT 80

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 57.3 bits (139), Expect = 7e-11
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG---IQSDQFTLVYDGKLLKEDTAT 118
           + + +K    QT  +    P  TV+ +K  I+ ++G          L+Y GK+L  D   
Sbjct: 6   VTITLKTLQQQTFKI-RMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKIL-SDDVP 63

Query: 119 MTSMNIKSESIIHLV 133
           +    I  ++ + ++
Sbjct: 64  IRDYRIDEKNFVVVM 78

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 136 PKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSA--ADHIM-IYEGKKLEDS 192
               ++I +K    +   + ++    ++ +K  + +  G  A        IY GK L D 
Sbjct: 2   IPMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD 61

Query: 193 KTLAFYDMKDE 203
             +  Y + ++
Sbjct: 62  VPIRDYRIDEK 72

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANI---IDLSLGNQDLFYAGTKLEACK 266
           P ++ I ++T  ++  ++ +E    V+ +KE +          +  Q L YAG  L    
Sbjct: 3   PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDV 62

Query: 267 TLASYGIKNNYVL 279
            +  Y I     +
Sbjct: 63  PIRDYRIDEKNFV 75

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 39.9 bits (94), Expect = 9e-05
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICD---LFFAGDRLEAGR-LVDYGIRNNSTLHFL 55
          ++  E +K LK  I  ++G          L +AG  L     + DY I   + +  +
Sbjct: 22 MEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVM 78

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 72.4 bits (178), Expect = 4e-16
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN-HVL 341
                + VK    K  T++V    TV  +K K+     TP+    + ++G  L ++   L
Sbjct: 13  VRKIHVTVKF-PSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNL 71

Query: 342 ARYNIQKHSTLHMVLAPSSR 361
             Y I + S + + L   +R
Sbjct: 72  NEYGITEFSEIVVFLKSINR 91

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 70.9 bits (174), Expect = 2e-15
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 52  LHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKL 111
            H  H  + ++ + VK P+ Q    VE     TV ++K  I + E     +  L Y G  
Sbjct: 6   HHHSHAAVRKIHVTVKFPSKQFT--VEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIE 63

Query: 112 LKEDTATMTSMNIKSESIIHLV 133
           L +D   +    I   S I + 
Sbjct: 64  LADDYRNLNEYGITEFSEIVVF 85

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 209 FPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKL-EACKT 267
               I + V+ P ++   +EV+    V  +K+ +  + +  +    L+Y+G +L +  + 
Sbjct: 12  AVRKIHVTVKFPSKQFT-VEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRN 70

Query: 268 LASYGIKNNYVLDVLPSP 285
           L  YGI     + V    
Sbjct: 71  LNEYGITEFSEIVVFLKS 88

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 126 SESIIHLVFCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYE 185
                H        + + VK  + +   +EV  +  +  +K  +  V         + Y 
Sbjct: 2   GHHHHHHSHAAVRKIHVTVKFPSKQFT-VEVDRTETVSSLKDKIHIVENTPIKRMQLYYS 60

Query: 186 GKKL-EDSKTLAFYDMKDECLLEMF 209
           G +L +D + L  Y + +   + +F
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVF 85

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRL--EAGRLVDYGIRNNSTLHFL 55
          V ++E + +LK  IH+ E        L+++G  L  +   L +YGI   S +   
Sbjct: 31 VDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVF 85

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 71.8 bits (176), Expect = 1e-15
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 283 PSPFQIFVKTW-GGKTITLDVQPYN-TVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHV 340
           P+  ++       G+ + + VQ  +  V  +K K+  ++Q P + Q +      L +N  
Sbjct: 27  PATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMS 86

Query: 341 LARYNIQKHSTLHMVLA----PSS 360
           LA YN+     L + L     PSS
Sbjct: 87  LAHYNVGAGEILTLSLRERSGPSS 110

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 54.8 bits (132), Expect = 9e-10
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 54  FLHQNLSEMKLFVKIPT---NQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK 110
           FL Q+     + V  P     Q   +        V ++K  I  +  I +++  L     
Sbjct: 20  FLAQHPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAG 79

Query: 111 LLKEDTATMTSMNIKSESIIHLV 133
            L +D  ++   N+ +  I+ L 
Sbjct: 80  FL-KDNMSLAHYNVGAGEILTLS 101

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 11/71 (15%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 140 LSIFVK-AATGEIVNLEVKH-SFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAF 197
           + +       G+ + + V+  S  +  +K  +   + + A    +  +   L+D+ +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 198 YDMKDECLLEM 208
           Y++    +L +
Sbjct: 90  YNVGAGEILTL 100

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 210 PSSIQIFVRTPIE-EIVRLEVEVL-IVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKT 267
           P++I++      + + + + V+ L   V  +KE +A  I +    Q L      L+   +
Sbjct: 27  PATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMS 86

Query: 268 LASYGIKNNYVL 279
           LA Y +    +L
Sbjct: 87  LAHYNVGAGEIL 98

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 6  SEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          SE + +LK  I  +  I  +   L      L+    L  Y +     L 
Sbjct: 51 SENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILT 99

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
            S  ++ VK +GGK+I L V P  TV+D+K +L          Q ++F GK L E   L 
Sbjct: 10  HSTIKLTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLK 68

Query: 343 RYNIQKHSTLHMVLAP 358
           + ++   + L ++ + 
Sbjct: 69  QSDVGSGAKLMLMASQ 84

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 53  HFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLL 112
           H  H + S +KL VK      +  +   P  TV+++K+ +Q    +      L++ GK+L
Sbjct: 4   HHHHHSHSTIKLTVK--FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVL 61

Query: 113 KEDTATMTSMNIKSESIIHLV 133
             +T+T+   ++ S + + L+
Sbjct: 62  V-ETSTLKQSDVGSGAKLMLM 81

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
            S+I++ V+   + I  L V     V+D+K  +  I ++    Q L + G  L    TL 
Sbjct: 10  HSTIKLTVKFGGKSIP-LSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLK 68

Query: 270 SYGIKNNYVLDVLPSP 285
              + +   L ++ S 
Sbjct: 69  QSDVGSGAKLMLMASQ 84

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           + + VK   G+ + L V     ++D+K+ +  +  V      +I++GK L ++ TL   D
Sbjct: 13  IKLTVKF-GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSD 71

Query: 200 MKDECLLEM 208
           +     L +
Sbjct: 72  VGSGAKLML 80

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 71.4 bits (175), Expect = 2e-15
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
           P   ++ VKT   K     V   ++VQ  K  +  + ++      ++FAGK L +   L 
Sbjct: 30  PKIIKVTVKTPKEK-EEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLI 88

Query: 343 RYNIQKHSTLHMVL 356
           ++ I    T+H+V+
Sbjct: 89  QHGIHDGLTVHLVI 102

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 67.9 bits (166), Expect = 3e-14
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             +K+ VK P  +    V      +VQ  K  I  +   Q+DQ  L++ GK+LK D  T+
Sbjct: 31  KIIKVTVKTPKEKEEFAVP--ENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTL 87

Query: 120 TSMNIKSESIIHLV 133
               I     +HLV
Sbjct: 88  IQHGIHDGLTVHLV 101

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 135 CPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKT 194
              +I+ + VK    +     V  + +++  K  +           ++I+ GK L+D  T
Sbjct: 28  AEPKIIKVTVKTPKEKE-EFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDT 86

Query: 195 LAFYDMKDE 203
           L  + + D 
Sbjct: 87  LIQHGIHDG 95

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
           P  I++ V+TP E+     V     V+  KE ++           L +AG  L+   TL 
Sbjct: 30  PKIIKVTVKTPKEKEE-FAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLI 88

Query: 270 SYGIKNNYVL 279
            +GI +   +
Sbjct: 89  QHGIHDGLTV 98

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 3   VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHF 54
           V ++  ++  K  I  +     D   L FAG  L+    L+ +GI +  T+H 
Sbjct: 48  VPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHL 100

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 73.7 bits (180), Expect = 9e-15
 Identities = 50/201 (24%), Positives = 79/201 (39%), Gaps = 17/201 (8%)

Query: 174 GVSAADHIMIYEGKKLEDSKTLAFYD-------MKDECLLEMFPSSIQIFVRTPIEEIVR 226
           G       + +EG  L +   L   D       +  +        ++ I        I  
Sbjct: 105 GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKV 164

Query: 227 LEVE--------VLIVVRDVKEIVANIIDLSLGNQDLFYAGTKL--EACKTLASYGIKNN 276
                       V +     +        + L +       + L  +  +      +   
Sbjct: 165 NFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEF 224

Query: 277 YVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLF 336
                +    QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L 
Sbjct: 225 VTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 284

Query: 337 ENHVLARYNIQKHSTLHMVLA 357
           +   L+ YNIQK STLH+VL 
Sbjct: 285 DGRTLSDYNIQKESTLHLVLR 305

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 63.7 bits (154), Expect = 2e-11
 Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 10/206 (4%)

Query: 13  KAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTL--HFLHQNLSEMKLFVKIP 69
           + +    +G  +   ++ F GD L     L     + +  +  H L  N +   +++   
Sbjct: 97  RTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMAD 156

Query: 70  TNQTATVVEAMPYHTVQNIKTMI---QVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKS 126
             +    V     H +++    +     +     D   L+ D   L   +A     N K 
Sbjct: 157 KQKNGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKR 216

Query: 127 ESIIHLVFCPKE----ILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIM 182
           + ++ L F         + IFVK  TG+ + LEV+ S  I +VKA +    G+      +
Sbjct: 217 DHMVLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL 276

Query: 183 IYEGKKLEDSKTLAFYDMKDECLLEM 208
           I+ GK+LED +TL+ Y+++ E  L +
Sbjct: 277 IFAGKQLEDGRTLSDYNIQKESTLHL 302

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 53  HFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLL 112
                    M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK L
Sbjct: 225 VTAAGITGSMQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 283

Query: 113 KEDTATMTSMNIKSESIIHLVFC 135
            ED  T++  NI+ ES +HLV  
Sbjct: 284 -EDGRTLSDYNIQKESTLHLVLR 305

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 40.2 bits (93), Expect = 9e-04
 Identities = 27/183 (14%), Positives = 62/183 (33%), Gaps = 20/183 (10%)

Query: 253 QDLFYAGTKLEACKTLASYGIKNNY-----VLDVLPSPFQIFV---KTWGGKTITLDVQP 304
            ++ + G  L     L     K +       L+   +   +++   K   G  +   ++ 
Sbjct: 111 AEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKVNFKIRH 170

Query: 305 YNTVQDVKVKLFDKLQTPLHLQSIVF-AGKRLFENHVLARYNIQKHSTLHMVLAPSSRII 363
                 V++    +  TP+    ++      L     L++   +K   + ++   ++  I
Sbjct: 171 NIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGI 230

Query: 364 ELPL-----------IFIDPSISLSISISEVKEMAKVKFQAAVKELLVDQVALQDDRTLA 412
              +           I ++   S +I   + K   K       + L+     L+D RTL+
Sbjct: 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 290

Query: 413 DYG 415
           DY 
Sbjct: 291 DYN 293

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 70.0 bits (170), Expect = 2e-13
 Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 3/81 (3%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKL---QTPLHLQSIVFAGKRLFENHV 340
           S   I +KT   +T  + ++P  TV+ +K K+  +      P+  Q +++AGK L ++  
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 341 LARYNIQKHSTLHMVLAPSSR 361
           +  Y I + + + +++  +  
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKA 86

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG---IQSDQFTLVYDGKLLKEDT 116
           S + + +K    QT  +    P  TV+ +K  I+ ++G          L+Y GK+L  D 
Sbjct: 6   SAVTITLKTLQQQTFKI-RMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DD 63

Query: 117 ATMTSMNIKSESIIHLVFCPK 137
             +    I  ++ + ++    
Sbjct: 64  VPIRDYRIDEKNFVVVMVTKT 84

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 51.1 bits (121), Expect = 3e-07
 Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 138 EILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVS---AADHIMIYEGKKLEDSKT 194
             ++I +K    +   + ++    ++ +K  + +  G      A   +IY GK L D   
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 195 LAFYDMKDECLL 206
           +  Y + ++  +
Sbjct: 66  IRDYRIDEKNFV 77

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 46.1 bits (108), Expect = 1e-05
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVAN---IIDLSLGNQDLFYAGTKLEACKT 267
           S++ I ++T  ++  ++ +E    V+ +KE +          +  Q L YAG  L     
Sbjct: 6   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 65

Query: 268 LASYGIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQ 309
           +  Y I     + V+ +  +    T      +    P ++  
Sbjct: 66  IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTS 107

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 58.8 bits (142), Expect = 3e-11
 Identities = 14/77 (18%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 60  SEMKLFVKIPT---NQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDT 116
           S M + V        +    ++  P   + N + + +++ G+ +++  +VY  +LL +D 
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 117 ATMTSMNIKSESIIHLV 133
            ++ S  +K   ++ L+
Sbjct: 66  CSLGSYGLKDGDMVVLL 82

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 287 QIFVKTW----GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENH-VL 341
            I V          T +L V P   + + +V    +   P     IV+  + L ++H  L
Sbjct: 9   LITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSL 68

Query: 342 ARYNIQKHSTLHMVLAPSSR 361
             Y ++    + ++   +  
Sbjct: 69  GSYGLKDGDMVVLLQKDNVG 88

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKL-EDSKTLAFY 198
           +    +  T    +L+V   F + + + +     GV A +  ++Y  + L +D  +L  Y
Sbjct: 12  VYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSY 71

Query: 199 DMKDECLLEM 208
            +KD  ++ +
Sbjct: 72  GLKDGDMVVL 81

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 212 SIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKL-EACKTLAS 270
           ++    R   E    L+V     + + + +      +      + Y    L +   +L S
Sbjct: 11  TVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGS 70

Query: 271 YGIKNNYVLDVLP 283
           YG+K+  ++ +L 
Sbjct: 71  YGLKDGDMVVLLQ 83

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 8/56 (14%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRL--EAGRLVDYGIRNNSTLHFLH 56
          V     + N + +  ++ G+  +   + +    L  +   L  YG+++   +  L 
Sbjct: 28 VNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 57.8 bits (139), Expect = 8e-11
 Identities = 12/75 (16%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV-FAGKRLFENHVLARYN 345
             F   +  + + + ++   TV ++K  L ++LQ P+    +  +    + ++ VL   +
Sbjct: 10  LDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLH 69

Query: 346 IQKHSTLHMVLAPSS 360
           + K+++L+++     
Sbjct: 70  LPKNNSLYVLTPDLP 84

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 6e-09
 Identities = 52/338 (15%), Positives = 102/338 (30%), Gaps = 98/338 (28%)

Query: 110 KLL-----KEDTATMTSMNIKSESIIHL--VFCPKEILSIFVKAATGEIVNL--EVK--H 158
           K+L     K+ T  +++      S+ H      P E+ S+ +K       +L  EV   +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 159 SFAIRDVKAIVGSVVGVSAADHIMIYEG-KKLEDSKTLAFYDMKDECL-----------L 206
              +        S++  S  D +  ++  K +   K     +     L           L
Sbjct: 327 PRRL--------SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 207 EMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQD-----LFYAGTK 261
            +FP S  I    P   +  +  +  ++  DV  +V  +   SL  +      +      
Sbjct: 379 SVFPPSAHI----PTILLSLIWFD--VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 262 LEACKT-----------LASYGIKNNYVLDVLPSP----------------------FQI 288
           LE               +  Y I   +  D L  P                        +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 289 FVKT-----WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENH-VLA 342
           F        +  + I  D   +N    +       L T   LQ + F    + +N     
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSI-------LNT---LQQLKFYKPYICDNDPKYE 542

Query: 343 RY------NIQKHSTLHMVLAPSSRIIELPLIFIDPSI 374
           R        + K    +++ +  + ++ + L+  D +I
Sbjct: 543 RLVNAILDFLPKIEE-NLICSKYTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 70/489 (14%), Positives = 139/489 (28%), Gaps = 165/489 (33%)

Query: 3   VKKSEPIKNLKAMIHVKEGI----------SEDICDLFFAGDRLEAGRLVDYGIRNNSTL 52
           +   E I ++        G            E++   F   + L      +Y        
Sbjct: 45  ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV-EEVLRI----NYK------- 92

Query: 53  HFLHQNLSE--------MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQ-- 102
            FL   +           +++++   ++     +    + V  ++  +++++ +   +  
Sbjct: 93  -FLMSPIKTEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 103 -FTLVY----DGKLLKEDTATMTSMNIKSESIIHLVFCPKEILSIFVKAATGEIVNLEVK 157
              L+      GK        +      S  +                    +I  L +K
Sbjct: 151 KNVLIDGVLGSGK------TWVALDVCLSYKV--------------QCKMDFKIFWLNLK 190

Query: 158 HSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFV 217
           +  +   V                       LE  + L +    +        S+I++ +
Sbjct: 191 NCNSPETV-----------------------LEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 218 RTPIEEIVRLEVE-----VLIVVRDVKEIVANIID-LSLGNQDLFYAGTKLEACKTLASY 271
            +   E+ RL         L+V+ +V+   A   +  +L              CK L + 
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLS-------------CKILLT- 271

Query: 272 GIKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK------------- 318
             +   V D L +             I+LD        D    L  K             
Sbjct: 272 -TRFKQVTDFLSAATT--------THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 319 LQT-PLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIELPL---------- 367
           L T P  L  I    + + +   LA ++  KH     +    + IIE  L          
Sbjct: 323 LTTNPRRLSII---AESIRDG--LATWDNWKHVNCDKL----TTIIESSLNVLEPAEYRK 373

Query: 368 ------IFID----PSISLSI----SISEVKEMAKVKFQAAVKELLVDQVALQDDRTLAD 413
                 +F      P+I LS+     I     +   K     K  LV++     + T++ 
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEK--QPKESTISI 428

Query: 414 YGMDLSEKV 422
             + L  KV
Sbjct: 429 PSIYLELKV 437

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 59/310 (19%), Positives = 106/310 (34%), Gaps = 74/310 (23%)

Query: 134 FCPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSK 193
           +  K+ILS+F  A            +F  +DV+ +  S++     DHI+     K   S 
Sbjct: 16  YQYKDILSVFEDA---------FVDNFDCKDVQDMPKSILSKEEIDHII---MSKDAVSG 63

Query: 194 TLAFYDMKDECLLEMFPSSIQIFVRTPIEE-----IVRLEVEVLIVVRDVKEIVANIIDL 248
           TL  +      LL      +Q FV   +       +  ++ E        +  +     L
Sbjct: 64  TLRLFW----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 249 SLGNQDLF--YAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVKTWG----GKTI-TLD 301
              NQ +F  Y  ++L+    L         +L++ P+   + +   G    GKT   LD
Sbjct: 120 YNDNQ-VFAKYNVSRLQPYLKL------RQALLELRPAKN-VLID--GVLGSGKTWVALD 169

Query: 302 VQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHV----LARYNIQKHSTLHMVLA 357
           V         KV                   +   +  +    L   N    + L M+  
Sbjct: 170 V-----CLSYKV-------------------QCKMDFKIFWLNLKNCN-SPETVLEMLQK 204

Query: 358 PSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQAAVKE--LLV-DQVALQDDRTLADY 414
              +I        D S ++ + I  ++   +   ++   E  LLV   V  Q+ +     
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNAKAWN-- 260

Query: 415 GMDLSEKVVL 424
             +LS K++L
Sbjct: 261 AFNLSCKILL 270

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 287 QIFVK-TWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            + +K  W      + V   +T  ++K K+      P  +Q +++ G  + E+  L    
Sbjct: 17  LVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIK 75

Query: 346 IQKHSTLHMV 355
           +   + + +V
Sbjct: 76  VTSGAKIMVV 85

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
            +  + +KI  N+T   V+     T   +K  I    G+      ++Y G +   +  T+
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP--EDKTL 71

Query: 120 TSMNIKSESIIHLV 133
             + + S + I +V
Sbjct: 72  REIKVTSGAKIMVV 85

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S + + VK    K   +++         K +LF         Q ++  G  L ++     
Sbjct: 6   SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTL-KDDDWGN 64

Query: 344 YNIQKHSTLHMV 355
             ++   T+ M+
Sbjct: 65  IKMKNGMTVLMM 76

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 3/82 (3%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
           S   + VK    +   V E          K  +    G+Q  +  ++  G  LK+D    
Sbjct: 6   SGYSVTVKWGKEKFEGV-ELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DW 62

Query: 120 TSMNIKSESIIHLVFCPKEILS 141
            ++ +K+   + ++     +  
Sbjct: 63  GNIKMKNGMTVLMMGSADALPE 84

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A Length = 105

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 283 PSPFQIFV----KTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN 338
               +++V          TI L V+P  TV  +K  +F     P  LQ  V   +   + 
Sbjct: 20  TQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQ 79

Query: 339 HVLARYNIQKH-STLHMVL 356
             L  + ++++  + ++ L
Sbjct: 80  ETLHSHGVRQNGDSAYLYL 98

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
           S + + +K   N T  +  A P  TV  +K+        Q  Q  L+Y G+LL++   T+
Sbjct: 6   SGINVRLKFL-NDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTL 61

Query: 120 TSMNIKSESIIHLV 133
           +S+NI +  +IH  
Sbjct: 62  SSLNITNNCVIHCH 75

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRL-FENHVL 341
            S   + +K           +P +TV  +K K F           +++ G+ L      L
Sbjct: 5   SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTL 61

Query: 342 ARYNIQKHSTLHMVLAP 358
           +  NI  +  +H   +P
Sbjct: 62  SSLNITNNCVIHCHRSP 78

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 284 SPFQIFVKTWGGK--TITLDVQPYNTVQDVKVKLFDKLQT--PLHLQSIVFAGKRLFENH 339
           S   + VK+   +   + L      +V  +K  L            Q ++++GK L ++ 
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 340 VLARYNIQKHS--TLHMVLAPSS 360
            L     ++     LH+V    S
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKS 88

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 60  SEMKLFVKIPTNQTATV-VEAMPYHTVQNIKTMIQVK--EGIQSDQFTLVYDGKLLKEDT 116
           S + L VK P  +   + +      +V ++K  +     E  + +   L+Y GKLL  D 
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DH 64

Query: 117 ATMTSMNIKSES--IIHLVFCPK 137
             +  +  K E   ++HLV   K
Sbjct: 65  QCLRDLLPKQEKRHVLHLVCNVK 87

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 55  LHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGI---QSDQFTLVYDGKL 111
           L       K  +++P  +      ++  +++  +K +I  K        +   L+Y G+ 
Sbjct: 19  LADQPLAPKSILQLPETELGEY--SLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76

Query: 112 LKEDTATMTSMNIKSESIIHLV 133
           LK D  T+    I+  S +H++
Sbjct: 77  LK-DDQTLDFYGIQPGSTVHVL 97

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 301 DVQPYN-TVQDVKVKLFDKLQTPL---HLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL 356
           +      ++  +K  +  KLQ  +    L  +++ G++L ++  L  Y IQ  ST+H++ 
Sbjct: 39  EYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLR 98

Query: 357 APSSR 361
              S 
Sbjct: 99  KSWSG 103

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 283 PSPFQIFVKTWGGKTITLD-VQPYNTVQDVKVKLFDKLQTPLHLQSIV---FAGKRLFEN 338
            S   I VK WGG+  ++  +   +TV D+K  L          Q ++     GK    +
Sbjct: 5   SSGLPIIVK-WGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND 63

Query: 339 HVLARYNIQKHSTLHMVLAPSSRI 362
             L    ++ ++ + M+    S  
Sbjct: 64  VKLGALKLKPNTKIMMMGTRESGP 87

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 283 PSPFQIFVKTWGGK--TITLDVQPYNTVQDVKVKLFDKLQT--PLHLQSIVFAGKRLFEN 338
             P  + +K    K    T+      TV  +K  L +   +      Q +V++G+ L ++
Sbjct: 21  GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDH 80

Query: 339 HVLAR--YNIQKHSTLHMV 355
             L        ++  +H+V
Sbjct: 81  LQLKDILRKQDEYHMVHLV 99

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Length = 99

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 60  SEMKLFVKIPTNQTATV-VEAMPYHTVQNIKTMIQ--VKEGIQSDQFTLVYDGKLLKEDT 116
             + L +K P  + +   +      TV  +KT +         +    LVY G+LL  D 
Sbjct: 22  HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLP-DH 80

Query: 117 ATMTSMNIKSES--IIHLV 133
             +  +  K +   ++HLV
Sbjct: 81  LQLKDILRKQDEYHMVHLV 99

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 235 VRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDVLPSPFQIFVKTWG 294
           V ++K IV  I+      Q L+     L+  KTL   G  +       P+   +  +   
Sbjct: 24  VFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRA-D 82

Query: 295 GKTITLDVQPYNT 307
                L ++P+++
Sbjct: 83  DTFEALRIEPFSS 95

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 287 QIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            +F+     K TI  D +  +TV ++K  +   L+ P   Q +    + L +   L    
Sbjct: 2   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECG 61

Query: 346 IQKHST 351
               + 
Sbjct: 62  FTSQTA 67

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A Length = 118

 Score = 38.5 bits (89), Expect = 6e-04
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M +F+ I  ++T    +A    TV  +K +++       ++  L  D +LL +D  T+  
Sbjct: 1   MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLL-DDGKTLGE 59

Query: 122 MNIKSES 128
               S++
Sbjct: 60  CGFTSQT 66

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 92

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 11/53 (20%), Positives = 26/53 (49%)

Query: 81  PYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133
               VQ++  +++   G+      L++ GK LKE    ++++ I+    + L+
Sbjct: 30  SEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 82

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 104

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 13/74 (17%), Positives = 34/74 (45%)

Query: 136 PKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTL 195
             + +++ V    G +V  ++K    +  +        G+S       ++G+ + ++ T 
Sbjct: 21  NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP 80

Query: 196 AFYDMKDECLLEMF 209
           A  +M+DE  +++F
Sbjct: 81  AQLEMEDEDTIDVF 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	426
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	100.0
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	100.0
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.98
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.82
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.81
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.81
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.8
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.8
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.79
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.79
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.78
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.78
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.77
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.77
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.77
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.77
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.76
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.76
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.76
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.76
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.76
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.76
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.76
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.76
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.76
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.75
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.75
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.75
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.75
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.75
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.75
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.75
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.74
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.74
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.74
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.74
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.74
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.74
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.74
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.73
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.73
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.73
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.73
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.73
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.73
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.72
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.72
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.72
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.72
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.72
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.72
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.72
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.72
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.72
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.72
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.71
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.71
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.71
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.71
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.71
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.71
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.71
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.71
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.71
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.71
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.71
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.7
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.7
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.7
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.7
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.7
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.7
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.7
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.7
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.7
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.53
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.7
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.69
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.69
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.69
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.69
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.69
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.68
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.68
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.68
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.68
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.68
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.68
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.68
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.67
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.67
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.67
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.67
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.67
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.67
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.67
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.66
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.66
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.66
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.47
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.65
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.65
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.65
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.65
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.65
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.65
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.65
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.64
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.64
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.64
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.63
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.63
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.62
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.62
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.62
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.62
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.61
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.61
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.61
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.61
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.6
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.6
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.6
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.6
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.58
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.58
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.57
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.57
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.56
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.55
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.54
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.53
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.52
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.52
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.52
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.52
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.52
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.52
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.51
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.51
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.51
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.51
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.51
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.51
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.51
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.5
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.5
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.48
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.48
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.46
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.46
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.45
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.44
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.44
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.42
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.42
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.41
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.4
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.39
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.39
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.38
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.36
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.34
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.34
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.32
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.32
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.32
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.31
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.31
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.28
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.27
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.27
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.26
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.26
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.21
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.2
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.2
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.19
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.19
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.15
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.13
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.95
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.95
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.95
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.92
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	98.83
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.79
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.67
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.61
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.57
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.52
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.4
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	98.39
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.35
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.26
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.23
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.15
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.14
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.12
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.11
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	98.09
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	98.03
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	98.01
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.99
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	97.91
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.89
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.86
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.85
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.78
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.7
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.7
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.57
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.46
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.35
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.2
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.15
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	96.96
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	96.85
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	96.59
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	96.24
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	96.05
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	95.96
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	95.9
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	95.85
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	95.42
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	95.24
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	95.16
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	95.02
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	94.52
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	94.35
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	94.25
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	94.12
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	93.96
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	93.76
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	93.62
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	93.52
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	93.39
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	92.96
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	92.91
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	92.61
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	92.6
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	92.59
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	92.29
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	92.24
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	91.73
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	91.58
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	91.18
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	89.99
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	89.93
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	89.57
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	89.5
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	89.25
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	88.99
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	88.95
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	88.48
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	88.0
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	87.64
1ef1_A	294	Moesin; membrane, FERM domain, tail domain, membra	87.29
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	85.72
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	85.43
1h4r_A	314	Merlin; FERM, neurofibromatosis, NF2, structural p	85.41
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	84.65
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	84.1
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	83.38
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	82.92
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	82.23
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	81.97
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	81.64
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	81.22
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	80.7

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=9.1e-35  Score=255.81  Aligned_cols=151  Identities=21%  Similarity=0.234  Sum_probs=143.8

Q ss_pred             cceeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCceeEE-e-cCeecCCCccccccCCCCCccccc----CCCC
Q 036691          212 SIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLF-Y-AGTKLEACKTLASYGIKNNYVLDV----LPSP  285 (426)
Q Consensus       212 ~~~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~-~-~g~~L~d~~tL~~y~I~~~~~l~l----~~~~  285 (426)
                      +|+|+|++++|+++++++++++||++||++|+..+|+|+++|+|. | +|+.|+|+++|++|+|.+++++++    ++.+
T Consensus         2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~   81 (159)
T 3rt3_B            2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP   81 (159)
T ss_dssp             -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred             ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence            389999999999999999999999999999999999999999999 9 799999999999999999999999    3678


Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      |+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|||++|++||+
T Consensus        82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~  158 (159)
T 3rt3_B           82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG  158 (159)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999995

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=6.7e-34  Score=253.51  Aligned_cols=152  Identities=41%  Similarity=0.602  Sum_probs=143.0

Q ss_pred             cCcceeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCceeEEecCeecCCCccccccCCCCCccccc---CCCCc
Q 036691          210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPF  286 (426)
Q Consensus       210 ~~~~~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l---~~~~m  286 (426)
                      +..|+|+|++++|+++.+++++++||.+||++|+..+|+|+++|+|.|+|+.|+|+.+|++|+|.++++|++   ++..|
T Consensus        18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~   97 (172)
T 3u30_A           18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM   97 (172)
T ss_dssp             -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence            456999999999999999999999999999999999999999999999999999999999999999999999   67889


Q ss_pred             EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      .++|++++|+++++++++++||.+||++|+.++|+|+++|+|+|+|+.|+|++||++|+|++|++|||++|++||
T Consensus        98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG  172 (172)
T 3u30_A           98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  172 (172)
T ss_dssp             EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred             cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999997

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=100.00  E-value=2e-33  Score=247.30  Aligned_cols=147  Identities=27%  Similarity=0.317  Sum_probs=143.2

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE-e-CCeEeecccccccccccccCcEEEEEee-cc
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV-Y-DGKLLKEDTATMTSMNIKSESIIHLVFC-PK  137 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~-~g~~L~d~~~tL~~y~I~~~s~i~l~~~-~~  137 (426)
                      .|+|+||+.+|++++ ++|++++||.+||++|++++|+|+++|+|+ | +|+.|+| +.+|++|+|++|++||++++ ++
T Consensus         2 ~m~i~vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d-~~tL~~y~i~~~~~l~l~~~~~~   79 (159)
T 3rt3_B            2 GWDLTVKMLAGNEFQ-VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQD-RVPLASQGLGPGSTVLLVVDKSD   79 (159)
T ss_dssp             -CEEEEEETTSCEEE-EECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCT-TSCGGGGTCCTTCEEEEEECCCC
T ss_pred             ceEEEEEECCCCEEE-EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCC-CCCHHHcCCCCCCEEEEEccCCC
Confidence            489999999999999 999999999999999999999999999999 9 7999999 99999999999999999999 69


Q ss_pred             ceeeeEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeeec
Q 036691          138 EILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMF  209 (426)
Q Consensus       138 ~g~~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l~  209 (426)
                      ++|.++|++.+|+++++++++++||+++|++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++||++
T Consensus        80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~  151 (159)
T 3rt3_B           80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMN  151 (159)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=250.39  Aligned_cols=150  Identities=39%  Similarity=0.597  Sum_probs=146.0

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      .+..|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+++++++
T Consensus        17 ~~~~m~i~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d-~~tL~~~~i~~~~~l~l~~~~~   94 (172)
T 3u30_A           17 RGSHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLR   94 (172)
T ss_dssp             --CCEEEEEEETTTEEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTGGGTCCTTCEEEEEECCC
T ss_pred             CCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccc-cCCHhHcCCcccceeeeeeccc
Confidence            357899999999999999 99999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             ceeeeEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeeec
Q 036691          138 EILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMF  209 (426)
Q Consensus       138 ~g~~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l~  209 (426)
                      +|+.++|++.+|+++++++.+++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+
T Consensus        95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~  166 (172)
T 3u30_A           95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV  166 (172)
T ss_dssp             CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEEC
T ss_pred             ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=100.00  E-value=5.6e-32  Score=235.90  Aligned_cols=149  Identities=42%  Similarity=0.613  Sum_probs=144.3

Q ss_pred             ceeEEEcCCCcEEEEeecccccHHHHHHHHHHHhCCCCCceeEEecCeecCCCccccccCCCCCccccc---CCCCcEEE
Q 036691          213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGIKNNYVLDV---LPSPFQIF  289 (426)
Q Consensus       213 ~~i~V~~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tL~~y~I~~~~~l~l---~~~~m~i~  289 (426)
                      |+|+|++++|+.+.+++++++||++||++|++.+|+|+++|+|.|+|+.|+|+.+|++|+|.+++++++   .+..|+|+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~   80 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF   80 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence            789999999999999999999999999999999999999999999999999999999999999999999   46679999


Q ss_pred             EEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          290 VKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       290 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |++++|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++||+++|++||
T Consensus        81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG  152 (152)
T 3b08_A           81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  152 (152)
T ss_dssp             EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred             eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.98  E-value=2.6e-31  Score=231.64  Aligned_cols=146  Identities=40%  Similarity=0.617  Sum_probs=143.4

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS  141 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~  141 (426)
                      |+|+||+.+|+++. +++++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|++++++|++.+.++++.
T Consensus         1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d-~~tL~~~~i~~~~~l~l~~~~~~~~~   78 (152)
T 3b08_A            1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGGMQ   78 (152)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEECCTTCEE
T ss_pred             CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcC-cccHHHhccCCCCeeEEEeecccccc
Confidence            89999999999999 99999999999999999999999999999999999998 99999999999999999999999999


Q ss_pred             eEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeeec
Q 036691          142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMF  209 (426)
Q Consensus       142 i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l~  209 (426)
                      ++|++.+|+++.+++.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+|++|+++
T Consensus        79 i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~  146 (152)
T 3b08_A           79 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV  146 (152)
T ss_dssp             EEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             eeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999987

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.82  E-value=7.4e-20  Score=141.08  Aligned_cols=78  Identities=26%  Similarity=0.320  Sum_probs=75.4

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      .++|+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++||+++|++|
T Consensus         2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G   79 (79)
T 3phx_B            2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG   79 (79)
T ss_dssp             -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred             CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence            467999999999999999999999999999999999999999999999999999999999999999999999999986

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.81  E-value=7.4e-20  Score=142.66  Aligned_cols=74  Identities=18%  Similarity=0.205  Sum_probs=70.6

Q ss_pred             CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691          282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       282 ~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~  355 (426)
                      .++.|+|+|++++|++++++++|++||++||++|++++|+|+++|||+|+|++|+|+.||++|+|++|+||||.
T Consensus        18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence            46779999999999999999999999999999999999999999999999999999999999999999999986

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.81  E-value=7.2e-21  Score=157.13  Aligned_cols=104  Identities=32%  Similarity=0.388  Sum_probs=98.8

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      -+..+|+|++++|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+++.+++|
T Consensus         7 ~~~~~i~vk~l~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~ygI~~gstI~l~~~~~G   84 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLED-GRTLSDYNIQRESTLHLVLRLRG   84 (114)
T ss_dssp             CCCCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTTTTTCCSSCEEEEEECCCS
T ss_pred             CCcEEEEEEeCCCcEEE-EEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEEcCC
Confidence            36789999999999999 99999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             eeeeEee---cccCcEEEEeccCCCcHHH
Q 036691          139 ILSIFVK---AATGEIVNLEVKHSFAIRD  164 (426)
Q Consensus       139 g~~i~Vk---~~~gk~~~i~v~~~~tV~~  164 (426)
                      |+.++++   +.+|+++++++++++||++
T Consensus        85 G~~~~~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           85 GSMGGAADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             SCCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             CceeeccccccccCceEEEEeccccccCC
Confidence            9999998   5689999999999999874

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.80  E-value=1e-19  Score=141.92  Aligned_cols=78  Identities=14%  Similarity=0.315  Sum_probs=70.7

Q ss_pred             EEEecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           54 FLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        54 l~~~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      |+-..+..|+|+||+++|++++ ++++|++||.+||++|++++|+|+++|||+|+|++|+| +.||++|+|++|++|+|.
T Consensus        14 ~~~~~~~mIqI~Vk~~~Gkk~~-v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD-~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           14 LVPRGSHMIEVVVNDRLGKKVR-VKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKD-HISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             ------CEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEE
T ss_pred             ccCCCCceEEEEEECCCCCEEE-EEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccC-cCCHHHcCCCCCCEEEEE
Confidence            4556678999999999999999 99999999999999999999999999999999999999 999999999999999984

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.80  E-value=1.6e-19  Score=142.13  Aligned_cols=78  Identities=32%  Similarity=0.471  Sum_probs=73.2

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      |+|+|++++|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|++|++||..
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~   78 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG   78 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC----
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999999965

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.79  E-value=2.4e-19  Score=141.14  Aligned_cols=88  Identities=24%  Similarity=0.368  Sum_probs=72.0

Q ss_pred             CCCCCCeEEEEEecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccccccc
Q 036691           45 GIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNI  124 (426)
Q Consensus        45 ~i~~~~~l~l~~~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I  124 (426)
                      |..+++++++.++.+..|+|+||+.+|+++. +++++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|
T Consensus         1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~i   78 (88)
T 4eew_A            1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD-DKKLQEYNV   78 (88)
T ss_dssp             --------------CCEEEEEEEETTSCEEE-EEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBGGGGTC
T ss_pred             CCCCCCceEEeecCCCeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCC-CCcHHHcCC
Confidence            4567889999999999999999999999999 99999999999999999999999999999999999999 999999999


Q ss_pred             ccCcEEEEEee
Q 036691          125 KSESIIHLVFC  135 (426)
Q Consensus       125 ~~~s~i~l~~~  135 (426)
                       +|++|||++|
T Consensus        79 -~g~~i~lv~R   88 (88)
T 4eew_A           79 -GGKVIHLVER   88 (88)
T ss_dssp             -TTEEEEEEEC
T ss_pred             -CCcEEEEEEC
Confidence             8999999875

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.79  E-value=4.8e-19  Score=136.49  Aligned_cols=77  Identities=22%  Similarity=0.365  Sum_probs=74.7

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      +.|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++||+++|++|
T Consensus         3 ~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d-~~tL~~~~i~~~~~l~l~~rl~G   79 (79)
T 3phx_B            3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLED-QLPLGEYGLKPLSTVFMNLRLRG   79 (79)
T ss_dssp             CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBGGGGTCCTTCEEEEEECCBC
T ss_pred             CCEEEEEEeCCCCEEE-EEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEecCC
Confidence            5799999999999999 99999999999999999999999999999999999999 99999999999999999999875

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.78  E-value=6.2e-19  Score=138.71  Aligned_cols=79  Identities=30%  Similarity=0.487  Sum_probs=76.7

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ..+|+|+|++++|++++++|++++||++||++|++++|+|++.|+|+|+|+.|+|+.||++|+|+++++||+++|++||
T Consensus        10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   88 (88)
T 3dbh_I           10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG   88 (88)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            3579999999999999999999999999999999999999999999999999999999999999999999999999997

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.78  E-value=4.9e-19  Score=136.44  Aligned_cols=77  Identities=13%  Similarity=0.268  Sum_probs=74.7

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      .|+|+|++.+|++++++|++++||++||++++++.|+|+++|+|+|+|++|+|+.||++|+|++|++||++++++||
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG   79 (79)
T 2uyz_B            3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   79 (79)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999987

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.77  E-value=7.9e-19  Score=140.75  Aligned_cols=79  Identities=13%  Similarity=0.256  Sum_probs=76.6

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      +..|+|+|++.+|++++++|.+++||++||++|+++.|+|+++|+|+|+|++|+|+.||++|+|+++++||++++++||
T Consensus        19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG   97 (97)
T 1wyw_B           19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG   97 (97)
T ss_dssp             CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence            3469999999999999999999999999999999999999999999999999999999999999999999999999997

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.77  E-value=1.5e-18  Score=132.43  Aligned_cols=76  Identities=33%  Similarity=0.523  Sum_probs=72.9

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |+|+|++.+|+++++++++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|||++|++||++++++||
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999987

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=1.3e-18  Score=139.80  Aligned_cols=79  Identities=49%  Similarity=0.700  Sum_probs=75.8

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ...|+|+|++++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||++|++||
T Consensus        20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG   98 (98)
T 4hcn_B           20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   98 (98)
T ss_dssp             --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            4579999999999999999999999999999999999999999999999999999999999999999999999999997

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.77  E-value=9.4e-19  Score=137.75  Aligned_cols=79  Identities=29%  Similarity=0.433  Sum_probs=72.8

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS  141 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~  141 (426)
                      |+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++++++||..
T Consensus         1 M~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~i~~g~~l~l~~rl~Gg~~   78 (88)
T 4fbj_B            1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAADYKILGGSVLHLVLALRGGGG   78 (88)
T ss_dssp             CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TSBTTTTTCCTTCEEEEECBCC----
T ss_pred             CEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCC-CCcHHHcCCCCCCEEEEEEECCCCCC
Confidence            79999999999999 99999999999999999999999999999999999999 99999999999999999999999865


Q ss_pred             e
Q 036691          142 I  142 (426)
Q Consensus       142 i  142 (426)
                      .
T Consensus        79 ~   79 (88)
T 4fbj_B           79 L   79 (88)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=1.6e-18  Score=135.34  Aligned_cols=80  Identities=40%  Similarity=0.573  Sum_probs=73.3

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      .+|+|+|++++|+++++++++++||++||++|++++++|+++|+|+|+|+.|+|+.||++|+|+++++||+++|++||..
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~g   81 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGGG   81 (85)
T ss_dssp             --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC----
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999853

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.76  E-value=2.3e-18  Score=136.13  Aligned_cols=80  Identities=23%  Similarity=0.404  Sum_probs=74.5

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      +..|+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +|++|||+++.+++.
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~~   81 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQT   81 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC--
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCCC
Confidence            4579999999999999999999999999999999999999999999999999999999999999 899999999988775


Q ss_pred             c
Q 036691          363 I  363 (426)
Q Consensus       363 ~  363 (426)
                      .
T Consensus        82 ~   82 (90)
T 4dwf_A           82 H   82 (90)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=2e-18  Score=135.90  Aligned_cols=79  Identities=42%  Similarity=0.648  Sum_probs=70.5

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      ..|+|+|++++|+++.+++++++||++||++|++++|+|++.|+|+|+|+.|+|+.||++|||++|++|+++++++||.
T Consensus         8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~   86 (88)
T 1sif_A            8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG   86 (88)
T ss_dssp             --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred             cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999999999984

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=2.3e-18  Score=135.17  Aligned_cols=80  Identities=26%  Similarity=0.320  Sum_probs=77.4

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      +..|+|+|++.+|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++||++++++||.
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~   84 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP   84 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999984

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.76  E-value=2.6e-18  Score=135.25  Aligned_cols=82  Identities=23%  Similarity=0.376  Sum_probs=71.7

Q ss_pred             CCccccc---CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCE
Q 036691          275 NNYVLDV---LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHST  351 (426)
Q Consensus       275 ~~~~l~l---~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~t  351 (426)
                      +++.+.+   .+..|+|+|++.+|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++||| +|++
T Consensus         4 ~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~   82 (88)
T 4eew_A            4 PNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKV   82 (88)
T ss_dssp             -----------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEE
T ss_pred             CCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcE
Confidence            3445544   46679999999999999999999999999999999999999999999999999999999999999 8999


Q ss_pred             EEEEee
Q 036691          352 LHMVLA  357 (426)
Q Consensus       352 i~l~~~  357 (426)
                      |||++|
T Consensus        83 i~lv~R   88 (88)
T 4eew_A           83 IHLVER   88 (88)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999976

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.76  E-value=2.4e-18  Score=136.95  Aligned_cols=81  Identities=22%  Similarity=0.292  Sum_probs=76.9

Q ss_pred             CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCC-CccccCCCCCCCEEEEEeecCC
Q 036691          282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN-HVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       282 ~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~-~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      .+..|+|+|++.+| +++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|+++++|
T Consensus        12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g   90 (94)
T 2kan_A           12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN   90 (94)
T ss_dssp             SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred             CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence            45689999999987 899999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             Ccc
Q 036691          361 RII  363 (426)
Q Consensus       361 g~~  363 (426)
                      |+.
T Consensus        91 g~~   93 (94)
T 2kan_A           91 RAK   93 (94)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            853

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.76  E-value=4.3e-18  Score=129.80  Aligned_cols=76  Identities=50%  Similarity=0.740  Sum_probs=74.6

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |+|+|++.+|+++++++++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|||++|++||++++++||
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999987

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.76  E-value=4.1e-18  Score=132.98  Aligned_cols=80  Identities=48%  Similarity=0.635  Sum_probs=75.8

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      .+|+|+|++++|+++++++++++||.+||++|++++++|+++|+|+|+|+.|+|+.+|++|+|+++++||+++|++||..
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~g   81 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGG   81 (85)
T ss_dssp             -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC--
T ss_pred             CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999853

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.76  E-value=4.1e-18  Score=134.99  Aligned_cols=77  Identities=47%  Similarity=0.698  Sum_probs=74.4

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      +..|+|+|++++|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++||+++|+|
T Consensus        15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr   91 (91)
T 3v6c_B           15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   91 (91)
T ss_dssp             CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999875

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.75  E-value=4.7e-18  Score=136.00  Aligned_cols=79  Identities=49%  Similarity=0.684  Sum_probs=74.2

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      .|+|+|++++|++++++|++++||.+||++|++++|+|++.|+|+|+|+.|+|+.||++|+|+++++||++++++||..
T Consensus         1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~   79 (96)
T 3k9o_B            1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYAD   79 (96)
T ss_dssp             -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999999999965

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.75  E-value=2e-18  Score=135.93  Aligned_cols=80  Identities=25%  Similarity=0.311  Sum_probs=72.5

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      .+|+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+++.+++||..
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~~   82 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGLE   82 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC------
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCcc
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999853

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.75  E-value=6.1e-18  Score=133.36  Aligned_cols=79  Identities=24%  Similarity=0.405  Sum_probs=76.0

Q ss_pred             CCcEEEEEecCC-cEEEE-EEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          284 SPFQIFVKTWGG-KTITL-DVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       284 ~~m~i~v~~~~g-~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ..|+|+|++.+| +++++ ++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++|||+++++||
T Consensus         6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG   85 (89)
T 1wy8_A            6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG   85 (89)
T ss_dssp             SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence            579999999999 79999 5999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c
Q 036691          362 I  362 (426)
Q Consensus       362 ~  362 (426)
                      .
T Consensus        86 ~   86 (89)
T 1wy8_A           86 P   86 (89)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.75  E-value=2.1e-18  Score=137.19  Aligned_cols=72  Identities=14%  Similarity=0.143  Sum_probs=69.9

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      .|+|+|++++|++++++|+|++||++||++|++++|+|+++|||+|+|++|+|+.||++|||++++||||+.
T Consensus        28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence            499999999999999999999999999999999999999999999999999999999999999999999864

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.75  E-value=3.5e-18  Score=137.28  Aligned_cols=92  Identities=37%  Similarity=0.489  Sum_probs=74.6

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS  141 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~  141 (426)
                      |+|+||+.+|+++. ++|++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++.+++||.+
T Consensus         1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~i~l~~~~~gG~~   78 (98)
T 1yx5_B            1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGGRD   78 (98)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEECCCCC--
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCC-CCCHHHcCCCCCCEEEEEEeCCCCCc
Confidence            89999999999999 99999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             eEeecccCcEEEEe
Q 036691          142 IFVKAATGEIVNLE  155 (426)
Q Consensus       142 i~Vk~~~gk~~~i~  155 (426)
                      ++.++.+|+.-.++
T Consensus        79 i~~~~v~~~~~~~~   92 (98)
T 1yx5_B           79 PNSSSVDKLAAALE   92 (98)
T ss_dssp             --------------
T ss_pred             CccccCCCchhhhh
Confidence            99999887765554

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.75  E-value=3.6e-18  Score=133.04  Aligned_cols=75  Identities=21%  Similarity=0.334  Sum_probs=72.3

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCee-cCCCCccccCCCCCCCEEEEEeec
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKR-LFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~-L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      ..|+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+. |+|++||++|||++|++|++++++
T Consensus         9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p   84 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS   84 (84)
T ss_dssp             CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred             CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence            469999999999999999999999999999999999999999999999999 999999999999999999998763

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.1e-18  Score=143.94  Aligned_cols=81  Identities=44%  Similarity=0.649  Sum_probs=77.8

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      ...++|+|++++|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|+.+++||.
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~   86 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS   86 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             c
Q 036691          363 I  363 (426)
Q Consensus       363 ~  363 (426)
                      .
T Consensus        87 ~   87 (114)
T 2kdi_A           87 M   87 (114)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.74  E-value=3.7e-18  Score=135.75  Aligned_cols=78  Identities=19%  Similarity=0.226  Sum_probs=72.7

Q ss_pred             CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       282 ~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ++..|+|+|++  |++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++|++++|++||
T Consensus        16 ~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG   93 (93)
T 2l7r_A           16 PRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG   93 (93)
T ss_dssp             ----CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred             CCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            35679999998  8999999999999999999999999999999999999999999999999999999999999999997

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.74  E-value=3.7e-18  Score=131.49  Aligned_cols=77  Identities=12%  Similarity=0.206  Sum_probs=74.2

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      .|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.||++|+|+++++|+++++++||
T Consensus         3 ~m~i~vk~~~g~~~~-~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d-~~tl~~~~i~~~~~i~l~~~~~GG   79 (79)
T 2uyz_B            3 YIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD-NHTPKELGMEEEDVIEVYQEQTGG   79 (79)
T ss_dssp             EEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCHHHHTCCTTEEEEEEECCCC-
T ss_pred             eEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCC-CCCHHHcCCCCCCEEEEEEeccCC
Confidence            589999999999999 99999999999999999999999999999999999999 999999999999999999999886

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.74  E-value=8.2e-18  Score=138.16  Aligned_cols=78  Identities=50%  Similarity=0.715  Sum_probs=75.3

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ..|+|+|++++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|||++|++||
T Consensus        34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred             ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence            369999999999999999999999999999999999999999999999999999999999999999999999999997

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.74  E-value=5e-18  Score=133.49  Aligned_cols=79  Identities=29%  Similarity=0.411  Sum_probs=76.4

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      ...|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||++++++|
T Consensus        10 ~~~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d-~~tL~~~~i~~~~~i~l~~rl~G   87 (88)
T 3dbh_I           10 GGSMLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAADYKILGGSVLHLVLRLRG   87 (88)
T ss_dssp             CCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCT-TSBGGGGTCCTTCEEEECCCCCC
T ss_pred             CCcEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCC-CCcHHHcCCCCCCEEEEEEeCCC
Confidence            46899999999999999 99999999999999999999999999999999999999 99999999999999999999998


Q ss_pred             e
Q 036691          139 I  139 (426)
Q Consensus       139 g  139 (426)
                      |
T Consensus        88 G   88 (88)
T 3dbh_I           88 G   88 (88)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.74  E-value=1.8e-17  Score=136.19  Aligned_cols=78  Identities=50%  Similarity=0.715  Sum_probs=75.3

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ..|+|+|++.+|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++||+++|++||
T Consensus        34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999999987

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=1.2e-17  Score=128.23  Aligned_cols=74  Identities=22%  Similarity=0.455  Sum_probs=71.5

Q ss_pred             CcEEEEEecCCcEE-EEE-EcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          285 PFQIFVKTWGGKTI-TLD-VQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       285 ~m~i~v~~~~g~~~-~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      .|+|+|++.+|+++ +++ +++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++||+++|+
T Consensus         2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence            69999999999985 999 999999999999999999999999999999999999999999999999999999886

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.74  E-value=5.6e-18  Score=135.75  Aligned_cols=80  Identities=11%  Similarity=0.184  Sum_probs=76.5

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      .+..|+|+||+.+|+++. ++|.+++||.+||++|++++|+|+++|+|+|+|+.|+| +.||++|+|+++++||++++++
T Consensus        18 ~~~~m~I~Vk~~~g~~~~-l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d-~~tl~dy~i~~g~~I~l~~~~~   95 (97)
T 1wyw_B           18 EGEYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD-NHTPKELGMEEEDVIEVYQEQT   95 (97)
T ss_dssp             -CCEEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCHHHHTCCTTCEEEEEESSS
T ss_pred             CCCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCC-CCCHHHCCCCCCCEEEEEEecC
Confidence            456799999999999999 99999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             ce
Q 036691          138 EI  139 (426)
Q Consensus       138 ~g  139 (426)
                      ||
T Consensus        96 GG   97 (97)
T 1wyw_B           96 GG   97 (97)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.73  E-value=1e-17  Score=127.71  Aligned_cols=76  Identities=30%  Similarity=0.455  Sum_probs=72.4

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      |+|+||+.+|+++. +++++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|++.++++||
T Consensus         1 M~i~vk~~~g~~~~-~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A            1 MLIKVKTLTGKEIE-IDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBGGGGTCCTTCEEEEEECCC--
T ss_pred             CEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEeCCCC
Confidence            79999999999999 99999999999999999999999999999999999999 999999999999999999999886

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.73  E-value=1.3e-17  Score=135.76  Aligned_cols=76  Identities=18%  Similarity=0.211  Sum_probs=70.3

Q ss_pred             cEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCC-------CCEEEEEee
Q 036691          286 FQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQK-------HSTLHMVLA  357 (426)
Q Consensus       286 m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~-------~~ti~l~~~  357 (426)
                      |.+|++...++ ++.+++.+++||.+||++|+.++|+|+++|||+|+|++|+|++||++|||++       ++||||++|
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr   80 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence            56777777676 8889999999999999999999999999999999999999999999999999       999999999


Q ss_pred             cCCC
Q 036691          358 PSSR  361 (426)
Q Consensus       358 ~~gg  361 (426)
                      ..|.
T Consensus        81 ~~~~   84 (118)
T 4ajy_B           81 ADDT   84 (118)
T ss_dssp             CSSC
T ss_pred             cCCC
Confidence            8443

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=1.3e-17  Score=130.79  Aligned_cols=81  Identities=19%  Similarity=0.255  Sum_probs=77.5

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      .++.|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||++++++
T Consensus         4 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d-~~tL~~~~i~~g~~i~l~~~~~   81 (87)
T 1wh3_A            4 GSSGIQVFVKNPDGGSYA-YAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQD-WLGLGIYGIQDSDTLILSKKKG   81 (87)
T ss_dssp             CSSSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCS-SSBHHHHTCCTTEEEEEEECSC
T ss_pred             CCCCEEEEEEcCCCCEEE-EEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccC-CCCHHHCCCCCCCEEEEEEecc
Confidence            357899999999999999 99999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             cee
Q 036691          138 EIL  140 (426)
Q Consensus       138 ~g~  140 (426)
                      ||.
T Consensus        82 GG~   84 (87)
T 1wh3_A           82 SGP   84 (87)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            874

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.73  E-value=9.5e-18  Score=134.73  Aligned_cols=80  Identities=39%  Similarity=0.533  Sum_probs=75.4

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      ....|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|++++|++
T Consensus        19 ~~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~i~~g~~i~l~~rl~   96 (98)
T 4hcn_B           19 QGRPMQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLR   96 (98)
T ss_dssp             ---CCEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TCBSGGGTCCTTEEEEEECBCS
T ss_pred             CCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEecC
Confidence            346899999999999999 99999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             ce
Q 036691          138 EI  139 (426)
Q Consensus       138 ~g  139 (426)
                      ||
T Consensus        97 GG   98 (98)
T 4hcn_B           97 GG   98 (98)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.73  E-value=1.4e-17  Score=132.53  Aligned_cols=80  Identities=23%  Similarity=0.290  Sum_probs=75.9

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccc-ccccccccccCcEEEEEeec
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDT-ATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~-~tL~~y~I~~~s~i~l~~~~  136 (426)
                      .+..|+|+||+++| ++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| + .+|++|+|+++++|+|++++
T Consensus        12 ~~~~~~I~Vk~~~~-~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~~tL~~ygI~~gstl~lv~r~   88 (94)
T 2kan_A           12 AVRKIHVTVKFPSK-QFT-VEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELAD-DYRNLNEYGITEFSEIVVFLKS   88 (94)
T ss_dssp             SSCCEEEEEECSSC-EEE-EEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECC-TTSBHHHHTCCTTEEEEEEECC
T ss_pred             CCCCEEEEEEcCCc-EEE-EEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCC-CcccHHHCCCCCCCEEEEEEeC
Confidence            46789999999888 888 99999999999999999999999999999999999999 8 99999999999999999999


Q ss_pred             ccee
Q 036691          137 KEIL  140 (426)
Q Consensus       137 ~~g~  140 (426)
                      +||.
T Consensus        89 ~gg~   92 (94)
T 2kan_A           89 INRA   92 (94)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            9874

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.73  E-value=1.3e-17  Score=136.53  Aligned_cols=76  Identities=18%  Similarity=0.208  Sum_probs=69.3

Q ss_pred             cEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCC-------CCCEEEEEee
Q 036691          286 FQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ-------KHSTLHMVLA  357 (426)
Q Consensus       286 m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~-------~~~ti~l~~~  357 (426)
                      |+++++...++ +++++|++++||++||++|++++|||+++|||+|+|++|+|++||++|||+       +++||||++|
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr   80 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR   80 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence            56677666665 699999999999999999999999999999999999999999999999999       7999999999


Q ss_pred             cCCCc
Q 036691          358 PSSRI  362 (426)
Q Consensus       358 ~~gg~  362 (426)
                       .||.
T Consensus        81 -~~g~   84 (118)
T 2fnj_B           81 -ADDT   84 (118)
T ss_dssp             -SSSC
T ss_pred             -CCCc
Confidence             5553

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.72  E-value=4.6e-18  Score=132.83  Aligned_cols=73  Identities=18%  Similarity=0.379  Sum_probs=69.5

Q ss_pred             cEEEEEecCCcEEEEEEc--CCCcHHHHHHHH-HhHhCCCCcceEEEEcCeecCCCCccccCCC-CCCCEEEEEeec
Q 036691          286 FQIFVKTWGGKTITLDVQ--PYNTVQDVKVKL-FDKLQTPLHLQSIVFAGKRLFENHVLARYNI-QKHSTLHMVLAP  358 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~--~~~tV~~lK~~i-~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I-~~~~ti~l~~~~  358 (426)
                      |+|+||+++|++++++++  +++||++||++| +++.|+|+++|||+|+|+.|+|+.||++|+| ++|++|+++++.
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~   78 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   78 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence            899999999999998866  999999999999 9999999999999999999999999999999 799999998864

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.72  E-value=1.5e-17  Score=131.39  Aligned_cols=79  Identities=24%  Similarity=0.360  Sum_probs=74.4

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      .+..|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+| +|++|||+++.+
T Consensus         2 ~~~~m~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d-~~tL~~~~i-~g~~i~l~~~~~   78 (90)
T 4dwf_A            2 EPDSLEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD-DKKLQEYNV-GGKVIHLVERAP   78 (90)
T ss_dssp             CCCEEEEEEEETTCCEEE-EEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBGGGGTC-TTEEEEEEECCC
T ss_pred             CCcEEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCC-CCCHHHcCC-CCcEEEEEecCC
Confidence            357899999999999999 99999999999999999999999999999999999999 999999999 899999999977


Q ss_pred             ce
Q 036691          138 EI  139 (426)
Q Consensus       138 ~g  139 (426)
                      ++
T Consensus        79 ~~   80 (90)
T 4dwf_A           79 PQ   80 (90)
T ss_dssp             C-
T ss_pred             CC
Confidence            54

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.72  E-value=8.1e-18  Score=133.86  Aligned_cols=72  Identities=13%  Similarity=0.208  Sum_probs=69.6

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      ..|+|+||+++|+++. ++|+|++||.+||++|++++|+|+++|||+|+|++|+| +.+|++|+|+++++|+|.
T Consensus        27 ~mm~I~VKtl~Gk~i~-lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D-~~TL~dygI~~gstlhL~   98 (100)
T 1uh6_A           27 TMIEVVCNDRLGKKVR-VKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKD-HVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             CEEEEEEECSSSSCEE-EEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCS-SCBHHHHTCCTTEEEEEE
T ss_pred             CeEEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCC-CCCHHHcCCCCCCEEEEE
Confidence            3599999999999999 99999999999999999999999999999999999999 999999999999999985

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.72  E-value=9.2e-18  Score=132.07  Aligned_cols=79  Identities=23%  Similarity=0.354  Sum_probs=72.0

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      ..|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++.+++||
T Consensus         3 ~~m~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~~I~~g~~i~l~~~~~gg   80 (88)
T 2hj8_A            3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLED-QLPLGEYGLKPLSTVFMNLRLRGG   80 (88)
T ss_dssp             CEEEEEEEETTSCEEE-EEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCT-TSBHHHHHCSTTCEEEEEEC----
T ss_pred             ccEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEEcCCC
Confidence            4799999999999999 99999999999999999999999999999999999999 999999999999999999998887


Q ss_pred             e
Q 036691          140 L  140 (426)
Q Consensus       140 ~  140 (426)
                      .
T Consensus        81 ~   81 (88)
T 2hj8_A           81 L   81 (88)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=1.5e-17  Score=132.37  Aligned_cols=76  Identities=17%  Similarity=0.095  Sum_probs=69.1

Q ss_pred             EEEEecC----CcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          288 IFVKTWG----GKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       288 i~v~~~~----g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      |.|+..+    +++++++|++++||++||++|++++|+|+++|+|+|+||+|+|+.||++|+|++|++| ++++++|...
T Consensus        18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~~~   96 (100)
T 1wju_A           18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQSSG   96 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCCCC
T ss_pred             EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCCCc
Confidence            4555555    7899999999999999999999999999999999999999999999999999999999 8888888754


Q ss_pred             c
Q 036691          364 E  364 (426)
Q Consensus       364 ~  364 (426)
                      +
T Consensus        97 ~   97 (100)
T 1wju_A           97 P   97 (100)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.72  E-value=2.1e-17  Score=130.82  Aligned_cols=77  Identities=39%  Similarity=0.590  Sum_probs=74.1

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      +..|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|++++|++
T Consensus        15 ~~~m~i~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~i~l~~rlr   91 (91)
T 3v6c_B           15 RGSMQIFVNTLTGTHIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLR   91 (91)
T ss_dssp             CCSEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TCBTGGGTCCTTCEEEEECCCC
T ss_pred             CCeEEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCC-cCcHHHCCCCCCCEEEEEEecC
Confidence            47899999999999999 99999999999999999999999999999999999999 9999999999999999998865

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=1.4e-17  Score=132.38  Aligned_cols=79  Identities=22%  Similarity=0.267  Sum_probs=74.7

Q ss_pred             CCcEEEEEecCCc--EEEEEEcCCCcHHHHHHHHHhHh--CCCCcceEEEEcCeecCCCCccccC--CCCCCCEEEEEee
Q 036691          284 SPFQIFVKTWGGK--TITLDVQPYNTVQDVKVKLFDKL--QTPLHLQSIVFAGKRLFENHVLARY--NIQKHSTLHMVLA  357 (426)
Q Consensus       284 ~~m~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~--gip~~~q~L~~~gk~L~d~~tL~~y--~I~~~~ti~l~~~  357 (426)
                      ..|+|+|++.+|+  ++++++++++||++||++|++++  |+|+++|+|+|+|+.|+|+.+|++|  +|+++++|||+++
T Consensus         6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~   85 (93)
T 1wgd_A            6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence            4699999999998  67778889999999999999998  9999999999999999999999999  9999999999999


Q ss_pred             cCCCc
Q 036691          358 PSSRI  362 (426)
Q Consensus       358 ~~gg~  362 (426)
                      ++||.
T Consensus        86 ~~gg~   90 (93)
T 1wgd_A           86 VKSGP   90 (93)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            99984

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=2.3e-17  Score=126.62  Aligned_cols=75  Identities=19%  Similarity=0.279  Sum_probs=71.1

Q ss_pred             CceeEEEEcCCCcee-EEEE-EcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           60 SEMKLFVKIPTNQTA-TVVE-AMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~-~~~~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      ++|+|+||+.+|+++ . ++ |++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++||+++|+
T Consensus         1 g~m~i~Vk~~~g~~~~~-l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d-~~tL~~~~i~~g~~i~l~~r~   77 (78)
T 2faz_A            1 GSMWIQVRTMDGRQTHT-VDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMED-GHTLFDYEVRLNDTIQLLVRQ   77 (78)
T ss_dssp             -CEEEEEEETTSSCEEE-EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTTTTTCCTTCEEEEEECC
T ss_pred             CcEEEEEEECCCCEEEE-EeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCC-CCCHHHcCCCCCCEEEEEEeC
Confidence            479999999999996 8 99 999999999999999999999999999999999999 999999999999999998875

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.72  E-value=1.6e-17  Score=129.34  Aligned_cols=74  Identities=27%  Similarity=0.292  Sum_probs=71.5

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeE-eecccccccccccccCcEEEEEee
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKL-LKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~-L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      +.|+|+||+.+|+++. ++|++++||++||++|++++|+|+++|+|+|+|+. |+| +.+|++|+|++|++|+++++
T Consensus         9 ~~~~i~vk~l~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D-~~tL~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A            9 SHMKFLVENLNGSSFE-LEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILRE-DLTVEQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCS-SSBHHHHTCCTTSCEEEEEC
T ss_pred             CceEEEEEecCCcEEE-EEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCC-cCCHHHcCCCCCCEEEEEEc
Confidence            5799999999999999 99999999999999999999999999999999999 999 99999999999999999876

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.72  E-value=1.4e-17  Score=130.01  Aligned_cols=79  Identities=34%  Similarity=0.472  Sum_probs=72.8

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      +.|+|+||+.+|+++. +++++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|++++|++||
T Consensus         2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d-~~tL~~~~i~~~~~i~l~~rl~GG   79 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTII-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIHNHSALYLLLKLRGG   79 (85)
T ss_dssp             --CEEEEECGGGCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCT-TCBTTTTTCCTTCEEEEEECCC--
T ss_pred             CeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCC-CCCHHHCCCCCCCEEEEEEeccCC
Confidence            4699999999999999 99999999999999999999999999999999999999 999999999999999999999987


Q ss_pred             e
Q 036691          140 L  140 (426)
Q Consensus       140 ~  140 (426)
                      .
T Consensus        80 ~   80 (85)
T 3n3k_B           80 G   80 (85)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.71  E-value=3.6e-17  Score=131.36  Aligned_cols=78  Identities=50%  Similarity=0.696  Sum_probs=74.7

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      |+|+|++.+|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+++.+.+||..
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~   78 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRD   78 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC--
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999998854

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.71  E-value=2.8e-17  Score=136.04  Aligned_cols=82  Identities=18%  Similarity=0.237  Sum_probs=75.1

Q ss_pred             CCCCcEEEEEecCCcEE-EEEEcCCCcHHHHHHHH-----HhHhCCCC--cceEEEEcCeecCCCCccccCCCCCC----
Q 036691          282 LPSPFQIFVKTWGGKTI-TLDVQPYNTVQDVKVKL-----FDKLQTPL--HLQSIVFAGKRLFENHVLARYNIQKH----  349 (426)
Q Consensus       282 ~~~~m~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i-----~~~~gip~--~~q~L~~~gk~L~d~~tL~~y~I~~~----  349 (426)
                      +...|+|+|++.+|+.+ +++++|++||++||++|     ++++|+|+  ++|||||+||.|+|++||++|+|+.+    
T Consensus        13 ~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~   92 (126)
T 1se9_A           13 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAG   92 (126)
T ss_dssp             SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTT
T ss_pred             hcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccC
Confidence            34689999999999888 79999999999999999     56778997  89999999999999999999999998    


Q ss_pred             --CEEEEEeecCCCcc
Q 036691          350 --STLHMVLAPSSRII  363 (426)
Q Consensus       350 --~ti~l~~~~~gg~~  363 (426)
                        +|+||+++++||..
T Consensus        93 ~v~tmhlVlrl~g~~k  108 (126)
T 1se9_A           93 AVTTMHVIIQAPVTEK  108 (126)
T ss_dssp             CCEEEEEEECCCSSCC
T ss_pred             CcEEEEEEeccCCccc
Confidence              78999999998854

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.71  E-value=2.3e-17  Score=131.89  Aligned_cols=81  Identities=40%  Similarity=0.581  Sum_probs=73.8

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecccee
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEIL  140 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~  140 (426)
                      .|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||++++++||.
T Consensus         1 gm~i~vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d-~~tL~~~~i~~~~~i~l~~r~~gG~   78 (96)
T 3k9o_B            1 GMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGYA   78 (96)
T ss_dssp             -CEEEEEETTCCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEECCCC--
T ss_pred             CcEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEEcCCCC
Confidence            489999999999999 99999999999999999999999999999999999999 9999999999999999999999997


Q ss_pred             eeE
Q 036691          141 SIF  143 (426)
Q Consensus       141 ~i~  143 (426)
                      ...
T Consensus        79 ~~~   81 (96)
T 3k9o_B           79 DLR   81 (96)
T ss_dssp             ---
T ss_pred             ccc
Confidence            653

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=2e-17  Score=130.10  Aligned_cols=78  Identities=41%  Similarity=0.586  Sum_probs=70.1

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      ..|+|+|++.+|+++. +++++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+++++++||
T Consensus         8 ~~~~i~v~~~~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~i~l~~r~~GG   85 (88)
T 1sif_A            8 QGLQLFIKTLTGKTFT-VEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGG   85 (88)
T ss_dssp             --CEEEEEETTSCEEE-EECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TSBSGGGTCCTTCEEEEEC-----
T ss_pred             cceEEEEEeCCCCEEE-EEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEeCCCC
Confidence            4799999999999999 99999999999999999999999999999999999999 999999999999999999999987

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=2.9e-17  Score=128.08  Aligned_cols=79  Identities=38%  Similarity=0.515  Sum_probs=75.1

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      +.|+|+||+.+|+++. +++++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+++++++||
T Consensus         2 s~m~i~vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d-~~tL~~~~i~~~~~l~l~~r~~GG   79 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKWSTLFLLLRLRGG   79 (85)
T ss_dssp             -CEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TSBTGGGTCCTTCEEEEECCCCCC
T ss_pred             CeEEEEEEcCCCCEEE-EEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCC-CCCHHHcCCCCCCEEEEEEECcCC
Confidence            4799999999999999 99999999999999999999999999999999999999 999999999999999999999986


Q ss_pred             e
Q 036691          140 L  140 (426)
Q Consensus       140 ~  140 (426)
                      .
T Consensus        80 ~   80 (85)
T 3mtn_B           80 G   80 (85)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.71  E-value=3e-17  Score=125.07  Aligned_cols=76  Identities=42%  Similarity=0.610  Sum_probs=73.9

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      |+|+||+.+|+++. +++++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|++|++|++..+++||
T Consensus         1 M~i~vk~~~g~~~~-i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCC-CCcHHHcCCCCCCEEEEEEeCCCC
Confidence            79999999999999 99999999999999999999999999999999999999 999999999999999999999886

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.71  E-value=3.1e-17  Score=144.66  Aligned_cols=78  Identities=49%  Similarity=0.646  Sum_probs=74.2

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      |+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||++|++||..
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k   78 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGG   78 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999999855

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=3.5e-17  Score=128.97  Aligned_cols=80  Identities=20%  Similarity=0.269  Sum_probs=75.7

Q ss_pred             CCceeEEEEcCCC-ceeEEE-EEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           59 LSEMKLFVKIPTN-QTATVV-EAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        59 ~~~m~i~Vk~~~g-~~~~~~-~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      ...|+|+||+.+| +++. + +|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||+++++
T Consensus         5 ~~~m~i~Vk~~~g~~~~~-l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d-~~tL~~~~i~~g~~i~l~~~~   82 (89)
T 1wy8_A            5 SSGMWIQVRTIDGSKTCT-IEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLEN-GYTLFDYDVGLNDIIQLLVRP   82 (89)
T ss_dssp             SSCEEEEEEETTCSCEEE-EEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCS-SSBHHHHTCCTTCEEEEEECC
T ss_pred             CCcEEEEEEECCCCceEE-EEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCC-CCCHHHCCCCCCCEEEEEEeC
Confidence            3679999999999 6999 9 5999999999999999999999999999999999999 999999999999999999999


Q ss_pred             ccee
Q 036691          137 KEIL  140 (426)
Q Consensus       137 ~~g~  140 (426)
                      +||.
T Consensus        83 ~gG~   86 (89)
T 1wy8_A           83 DSGP   86 (89)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            9874

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.71  E-value=1.2e-17  Score=134.56  Aligned_cols=80  Identities=19%  Similarity=0.222  Sum_probs=74.0

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc---------------ceEEEEcCeecC-CCCccccCCCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLH---------------LQSIVFAGKRLF-ENHVLARYNIQ  347 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~---------------~q~L~~~gk~L~-d~~tL~~y~I~  347 (426)
                      ..|+|+|++++|++++++|.+++||++||++|+++.|+|+.               +|+|+|+|+.|. |+.||++|||+
T Consensus         6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~   85 (105)
T 1v2y_A            6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR   85 (105)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred             CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence            45999999999999999999999999999999999999984               569999999996 67999999999


Q ss_pred             CCCEEEEEeecCCCcc
Q 036691          348 KHSTLHMVLAPSSRII  363 (426)
Q Consensus       348 ~~~ti~l~~~~~gg~~  363 (426)
                      +|++||++.+++|...
T Consensus        86 ~g~~l~lv~~lr~~~~  101 (105)
T 1v2y_A           86 NRDEVSFIKKLGQKSG  101 (105)
T ss_dssp             SSEEEEEEECSCSCCC
T ss_pred             CCCEEEEEehhccCCC
Confidence            9999999999988743

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=6.8e-17  Score=128.93  Aligned_cols=77  Identities=25%  Similarity=0.430  Sum_probs=73.0

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhH---hCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK---LQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      |+|+|++.+|++++++|++++||++||++|+++   +|+|+++|+|+|+|+.|+|+.||++|||++|++|+++.+...+.
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~~   80 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV   80 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCCC
Confidence            899999999999999999999999999999999   89999999999999999999999999999999999998765553

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.71  E-value=6.1e-17  Score=126.39  Aligned_cols=76  Identities=24%  Similarity=0.371  Sum_probs=71.8

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhH---hCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK---LQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      +..|+|+|++.+|+++++++++++||++||++|+++   +|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+.
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~   81 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK   81 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence            568999999999999999999999999999999998   8999999999999999999999999999999999998864

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.70  E-value=2e-17  Score=131.49  Aligned_cols=78  Identities=22%  Similarity=0.273  Sum_probs=72.0

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      ++..|+|+||+  |+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|++++|++
T Consensus        16 ~~~~m~I~Vk~--g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~y~I~~gstI~lv~rl~   91 (93)
T 2l7r_A           16 PRGSMQLFVRA--QELHT-FEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLED-EATLGQCGVEALTTLEVAGRML   91 (93)
T ss_dssp             ----CEEEEES--SSEEE-EECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCT-TSBHHHHTCCSSCEEEEECCCC
T ss_pred             CCCcEEEEEEC--CCEEE-EEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEecC
Confidence            45689999998  89999 99999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             ce
Q 036691          138 EI  139 (426)
Q Consensus       138 ~g  139 (426)
                      ||
T Consensus        92 GG   93 (93)
T 2l7r_A           92 GG   93 (93)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.70  E-value=2.9e-17  Score=134.95  Aligned_cols=81  Identities=27%  Similarity=0.309  Sum_probs=78.0

Q ss_pred             CCCCcEEEEEec---CCcEEEEEEcC-CCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          282 LPSPFQIFVKTW---GGKTITLDVQP-YNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       282 ~~~~m~i~v~~~---~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      .+.+|+|+|+++   +|+++++++++ ++||++||++|+..+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|||+++
T Consensus        24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r  103 (111)
T 1we6_A           24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred             CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence            567899999999   89999999998 99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCc
Q 036691          358 PSSRI  362 (426)
Q Consensus       358 ~~gg~  362 (426)
                      ++||.
T Consensus       104 ~~GGk  108 (111)
T 1we6_A          104 ERSGP  108 (111)
T ss_dssp             SCCSS
T ss_pred             cCCCC
Confidence            99984

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=4.1e-17  Score=126.09  Aligned_cols=77  Identities=31%  Similarity=0.487  Sum_probs=73.4

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      +..|+|+|++++|+++++++++++||++||++|++++|+|++.|+|+|+|+.|+|+.+|++|||++|++||++++++
T Consensus         5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~   81 (81)
T 2dzi_A            5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL   81 (81)
T ss_dssp             SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999998763

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.70  E-value=2.2e-17  Score=147.16  Aligned_cols=84  Identities=39%  Similarity=0.533  Sum_probs=81.4

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      -.|+|+||+++|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|||+++++||
T Consensus       104 ~eMqI~VKtl~Gkt~~-l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D-~~tL~dygI~~gstI~LvlrlrGG  181 (189)
T 3q3f_A          104 YGGQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGG  181 (189)
T ss_dssp             CCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCT-TCBGGGGTCCTTCEEEECCCCCCC
T ss_pred             cceeeeeecCCCCEEE-EEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCC-CCCHHHCCCCCCCEEEEEEEcCCC
Confidence            3699999999999999 99999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             eeeEee
Q 036691          140 LSIFVK  145 (426)
Q Consensus       140 ~~i~Vk  145 (426)
                      ..+|||
T Consensus       182 ~~~fvk  187 (189)
T 3q3f_A          182 GQTFTK  187 (189)
T ss_dssp             CCCCCC
T ss_pred             CcceEe
Confidence            999886

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.4e-17  Score=130.06  Aligned_cols=73  Identities=19%  Similarity=0.354  Sum_probs=68.9

Q ss_pred             eeEEEEcCCCceeEEEEEc--CCCcHHHHHHHH-HHHhCCCCCceEEEeCCeEeeccccccccccc-ccCcEEEEEeec
Q 036691           62 MKLFVKIPTNQTATVVEAM--PYHTVQNIKTMI-QVKEGIQSDQFTLVYDGKLLKEDTATMTSMNI-KSESIIHLVFCP  136 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~--~~~tV~~lK~~I-~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I-~~~s~i~l~~~~  136 (426)
                      |+|+||+++|++++ ++|+  +++||.+||++| ++++|+|+++|||+|+|+.|+| +.+|++|+| ++|++|++..+.
T Consensus         2 mqI~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D-~~tL~~y~I~~~~stl~v~~~~   78 (87)
T 2lxa_A            2 VHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHD-NLFLSDLKVTPANSTITVMIKP   78 (87)
T ss_dssp             CEEEEEECSSSCEE-CCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCT-TCBHHHHCCCGGGCEEEEEECC
T ss_pred             EEEEEEcCCCCEEE-EEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcC-cCCHHHcCCCCCCCEEEEEcCC
Confidence            89999999999998 8866  999999999999 9999999999999999999999 999999999 799999997763

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.70  E-value=4.5e-17  Score=130.01  Aligned_cols=76  Identities=18%  Similarity=0.381  Sum_probs=70.1

Q ss_pred             CCCcEEEEEecCCcEEEE--EEcCCCcHHHHHHHH-HhHhCCCCcceEEEEcCeecCCCCccccCCC-CCCCEEEEEeec
Q 036691          283 PSPFQIFVKTWGGKTITL--DVQPYNTVQDVKVKL-FDKLQTPLHLQSIVFAGKRLFENHVLARYNI-QKHSTLHMVLAP  358 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l--~v~~~~tV~~lK~~i-~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I-~~~~ti~l~~~~  358 (426)
                      +..|+|+|++++|+++++  +|++++||++||++| +++.|+|+++|||+|+|+.|+|+.||++|+| ++|++|+++++.
T Consensus        17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk   96 (98)
T 4a20_A           17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   96 (98)
T ss_dssp             -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred             CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence            468999999999998777  566999999999999 8889999999999999999999999999999 999999999853

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.70  E-value=7.7e-17  Score=132.24  Aligned_cols=80  Identities=15%  Similarity=0.282  Sum_probs=72.4

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHh------HhCC--CCcceEEEEcCeecCCCCccccCCCCCC--CEE
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFD------KLQT--PLHLQSIVFAGKRLFENHVLARYNIQKH--STL  352 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gi--p~~~q~L~~~gk~L~d~~tL~~y~I~~~--~ti  352 (426)
                      ...|+|+|++++|++++++|++++||++||++|++      ++|+  |+++|||+|+||.|+|++||++|+|+.+  +||
T Consensus        14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl   93 (116)
T 1wgh_A           14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM   93 (116)
T ss_dssp             SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence            45699999999999999999999999999999999      6675  6999999999999999999999999766  679


Q ss_pred             EEEeecCCCc
Q 036691          353 HMVLAPSSRI  362 (426)
Q Consensus       353 ~l~~~~~gg~  362 (426)
                      ||++|+.++.
T Consensus        94 hLvlr~~~~~  103 (116)
T 1wgh_A           94 HLVARETLPE  103 (116)
T ss_dssp             EEEECSSCSS
T ss_pred             EEEccCCCCC
Confidence            9998887654

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.70  E-value=5.1e-17  Score=133.40  Aligned_cols=78  Identities=41%  Similarity=0.586  Sum_probs=75.1

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      ..|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||+++|++||
T Consensus        34 ~~m~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             GCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTTTTTCCTTCEEEEEECCCC-
T ss_pred             ccEEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEecCCC
Confidence            5799999999999999 99999999999999999999999999999999999999 999999999999999999999986

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.70  E-value=1.3e-19  Score=152.78  Aligned_cols=102  Identities=43%  Similarity=0.585  Sum_probs=13.6

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcccC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRIIEL  365 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~~~  365 (426)
                      |+|+|++.+|++++++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|||+++++||..  
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~--   78 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGII--   78 (128)
T ss_dssp             ----------------------------------------------------------------------------CC--
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCCC--
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999999954  


Q ss_pred             CceeeccccCCCCCHHHHHHHHHHh----cCcc
Q 036691          366 PLIFIDPSISLSISISEVKEMAKVK----FQAA  394 (426)
Q Consensus       366 ~~~~~~~~~~~~~~v~~~k~~i~~~----~~~~  394 (426)
                           ..+....+...++.++||++    +|+.
T Consensus        79 -----~~sl~~la~k~n~~~~ic~~~~~~~~~~  106 (128)
T 3u5e_m           79 -----EPSLKALASKYNCDKSVCRKCYARLPPR  106 (128)
T ss_dssp             -----CHHHHHHHHHHHTSCEEETTTCCEECTT
T ss_pred             -----ChhHHHHHHHhhcceEeeccccccCCch
Confidence                 23333333445556677766    6664

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.53  E-value=1.2e-18  Score=133.16  Aligned_cols=75  Identities=19%  Similarity=0.360  Sum_probs=73.3

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      |+|+|++.+|+++++++++++||++||++|++++|+|++.|+|+|+|+.|+|+.||++|||++|++||+++|++|
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999986

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.70  E-value=3.6e-17  Score=133.18  Aligned_cols=76  Identities=16%  Similarity=0.361  Sum_probs=70.7

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |+|+|++++|++++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+++....
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~   77 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKS   77 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC---
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCC
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999976543

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.69  E-value=5.4e-17  Score=144.69  Aligned_cols=79  Identities=49%  Similarity=0.651  Sum_probs=77.1

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      .|+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++|||+++++||..
T Consensus       105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~  183 (189)
T 3q3f_A          105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQ  183 (189)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCC
T ss_pred             ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCc
Confidence            5999999999999999999999999999999999999999999999999999999999999999999999999999965

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.69  E-value=6.5e-17  Score=142.63  Aligned_cols=82  Identities=39%  Similarity=0.527  Sum_probs=76.4

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS  141 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~  141 (426)
                      |+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++||+++|++||..
T Consensus         1 MqI~Vk~~~Gk~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~y~I~~gstI~Lvlrl~GG~k   78 (169)
T 3l0w_B            1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGGGG   78 (169)
T ss_dssp             CEEEEEETTSCEEE-EECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCT-TSBGGGGTCCTTCEEEEEECCCC---
T ss_pred             CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccC-cCcHHHcCCCCCCEEEEEEEeccccc
Confidence            89999999999999 99999999999999999999999999999999999999 99999999999999999999999877


Q ss_pred             eEee
Q 036691          142 IFVK  145 (426)
Q Consensus       142 i~Vk  145 (426)
                      ..|+
T Consensus        79 ~~vk   82 (169)
T 3l0w_B           79 ETIK   82 (169)
T ss_dssp             CCEE
T ss_pred             cccc
Confidence            6665

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=7.9e-17  Score=129.68  Aligned_cols=80  Identities=25%  Similarity=0.341  Sum_probs=75.7

Q ss_pred             CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       282 ~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      .+..|+|+|++.+|+ ++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|+++++++
T Consensus        19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~   97 (100)
T 1yqb_A           19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR   97 (100)
T ss_dssp             CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence            456799999999886 7999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             c
Q 036691          362 I  362 (426)
Q Consensus       362 ~  362 (426)
                      +
T Consensus        98 p   98 (100)
T 1yqb_A           98 A   98 (100)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.69  E-value=2.5e-17  Score=132.71  Aligned_cols=79  Identities=19%  Similarity=0.213  Sum_probs=73.3

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCC---------------CceEEEeCCeEeeccccccccccc
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQS---------------DQFTLVYDGKLLKEDTATMTSMNI  124 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~---------------~~q~L~~~g~~L~d~~~tL~~y~I  124 (426)
                      ..|+|+|++++|++++ ++|++++||.+||++|++++|+|+               ++|+|+|+|+.|.||+.+|++|+|
T Consensus         6 ~~M~I~Vk~l~g~~~~-v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI   84 (105)
T 1v2y_A            6 SGMTVRVCKMDGEVMP-VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI   84 (105)
T ss_dssp             CSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred             CcEEEEEEecCCCEEE-EEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence            4699999999999999 999999999999999999999987               467999999999754899999999


Q ss_pred             ccCcEEEEEeeccce
Q 036691          125 KSESIIHLVFCPKEI  139 (426)
Q Consensus       125 ~~~s~i~l~~~~~~g  139 (426)
                      ++|++||++.++++.
T Consensus        85 ~~g~~l~lv~~lr~~   99 (105)
T 1v2y_A           85 RNRDEVSFIKKLGQK   99 (105)
T ss_dssp             CSSEEEEEEECSCSC
T ss_pred             CCCCEEEEEehhccC
Confidence            999999999998864

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.69  E-value=4.1e-17  Score=133.50  Aligned_cols=75  Identities=20%  Similarity=0.267  Sum_probs=67.8

Q ss_pred             eeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccc-------cCcEEEEE
Q 036691           62 MKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIK-------SESIIHLV  133 (426)
Q Consensus        62 m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~-------~~s~i~l~  133 (426)
                      |++||+...|+ ++. ++|++++||.+||++|++++|+|+++|||+|+|+.|+| ++||++|||+       ++++|||+
T Consensus         1 M~mfl~ir~~ktti~-lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD-~~TLsdy~I~~~~a~~q~~stL~L~   78 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIF-TDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDD-GKTLGECGFTSQTARPQAPATVGLA   78 (118)
T ss_dssp             CEEEEEEEEBTEEEE-EEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred             CcEEEEEecCCEEEE-EEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCC-CCCHHHcCcccccccCCCCCEEEEE
Confidence            56666666676 577 99999999999999999999999999999999999999 9999999999       79999999


Q ss_pred             eeccce
Q 036691          134 FCPKEI  139 (426)
Q Consensus       134 ~~~~~g  139 (426)
                      +| .||
T Consensus        79 lr-~~g   83 (118)
T 2fnj_B           79 FR-ADD   83 (118)
T ss_dssp             EB-SSS
T ss_pred             ec-CCC
Confidence            99 554

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.68  E-value=6.1e-17  Score=133.98  Aligned_cols=82  Identities=13%  Similarity=0.190  Sum_probs=74.6

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHH-----HHHhCCCC--CceEEEeCCeEeecccccccccccccC---
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMI-----QVKEGIQS--DQFTLVYDGKLLKEDTATMTSMNIKSE---  127 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I-----~~~~gip~--~~q~L~~~g~~L~d~~~tL~~y~I~~~---  127 (426)
                      ..+.|+|+||+++|+.+.++++++++||.+||++|     ++++|+|+  ++|||+|+|++|+| +.||++|+|+++   
T Consensus        13 ~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD-~~TLsdy~I~~~~~~   91 (126)
T 1se9_A           13 VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN-SKTVKDYRSPVSNLA   91 (126)
T ss_dssp             SCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCT-TSBGGGGSCCTTSCT
T ss_pred             hcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcC-CCcHHHcCCCcCCcc
Confidence            34789999999999998349999999999999999     66788987  89999999999999 999999999998   


Q ss_pred             ---cEEEEEeecccee
Q 036691          128 ---SIIHLVFCPKEIL  140 (426)
Q Consensus       128 ---s~i~l~~~~~~g~  140 (426)
                         +++||++++++|-
T Consensus        92 ~~v~tmhlVlrl~g~~  107 (126)
T 1se9_A           92 GAVTTMHVIIQAPVTE  107 (126)
T ss_dssp             TCCEEEEEEECCCSSC
T ss_pred             CCcEEEEEEeccCCcc
Confidence               7899999999763

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.68  E-value=1.5e-16  Score=132.43  Aligned_cols=80  Identities=15%  Similarity=0.255  Sum_probs=73.6

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHh------HhCCC--CcceEEEEcCeecCCCCccccCCCCCCC--EEE
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFD------KLQTP--LHLQSIVFAGKRLFENHVLARYNIQKHS--TLH  353 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gip--~~~q~L~~~gk~L~d~~tL~~y~I~~~~--ti~  353 (426)
                      ..|.|+|++++|++++++|+|++||++||++|++      ++|+|  +++|||+|+||.|+|++||++|+|+.++  |+|
T Consensus        16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh   95 (125)
T 2gow_A           16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH   95 (125)
T ss_dssp             TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred             CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence            4589999999999999999999999999999999      78884  8999999999999999999999999776  789


Q ss_pred             EEeecCCCcc
Q 036691          354 MVLAPSSRII  363 (426)
Q Consensus       354 l~~~~~gg~~  363 (426)
                      |++|++++..
T Consensus        96 lv~r~~~~~~  105 (125)
T 2gow_A           96 LVARETLPEP  105 (125)
T ss_dssp             EEECSCCSSS
T ss_pred             EEecCCCCcc
Confidence            9999987654

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2.1e-17  Score=133.28  Aligned_cols=90  Identities=29%  Similarity=0.441  Sum_probs=68.4

Q ss_pred             cccCCCCCCCeEEEEEecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccc
Q 036691           41 LVDYGIRNNSTLHFLHQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMT  120 (426)
Q Consensus        41 l~~y~i~~~~~l~l~~~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~  120 (426)
                      .++|.|  +.|.+|.++....|.|+||+ +|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|+
T Consensus        10 ~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~   84 (101)
T 3m63_B           10 MSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKD-DQTVE   84 (101)
T ss_dssp             ---------------------CCEEEEC-SSCCCC-BCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCT-TSBTT
T ss_pred             ccccCC--CcceeecccCCcEEEEEEEE-CCEEEE-EEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCC-cCcHH
Confidence            889998  56777777777889999998 899999 99999999999999999999999999999999999999 99999


Q ss_pred             ccccccCcEEEEEee
Q 036691          121 SMNIKSESIIHLVFC  135 (426)
Q Consensus       121 ~y~I~~~s~i~l~~~  135 (426)
                      +|+|++|++|+|+.+
T Consensus        85 ~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           85 SYHIQDGHSVHLVKS   99 (101)
T ss_dssp             TTTCCTTEEEEECCC
T ss_pred             HCCCCCCCEEEEEeC
Confidence            999999999999765

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=7.1e-17  Score=128.33  Aligned_cols=79  Identities=22%  Similarity=0.312  Sum_probs=73.7

Q ss_pred             CCceeEEEEcCCCc--eeEEEEEcCCCcHHHHHHHHHHHh--CCCCCceEEEeCCeEeeccccccccc--ccccCcEEEE
Q 036691           59 LSEMKLFVKIPTNQ--TATVVEAMPYHTVQNIKTMIQVKE--GIQSDQFTLVYDGKLLKEDTATMTSM--NIKSESIIHL  132 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~--~~~~~~v~~~~tV~~lK~~I~~~~--gip~~~q~L~~~g~~L~d~~~tL~~y--~I~~~s~i~l  132 (426)
                      ...|+|+||+.+|+  ++. +++++++||.+||++|++++  |+|+++|||+|+|+.|+| +.+|++|  +|+++++|||
T Consensus         5 ~~~m~i~Vk~~~~~~~~~~-v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D-~~tL~~~~~~i~~~~~i~l   82 (93)
T 1wgd_A            5 SSGVTLLVKSPNQRHRDLE-LSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLD-HQCLRDLLPKQEKRHVLHL   82 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEE-EECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCS-SSCHHHHSCSSSCSEEEEE
T ss_pred             CcEEEEEEEeCCCCeEEEE-EecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcC-cCCHHHHhcCCCCCCEEEE
Confidence            46799999999998  666 77779999999999999998  999999999999999999 9999999  9999999999


Q ss_pred             Eeeccce
Q 036691          133 VFCPKEI  139 (426)
Q Consensus       133 ~~~~~~g  139 (426)
                      +++++||
T Consensus        83 v~~~~gg   89 (93)
T 1wgd_A           83 VCNVKSG   89 (93)
T ss_dssp             ECCCCCC
T ss_pred             EeCCCCC
Confidence            9999886

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2e-17  Score=133.44  Aligned_cols=92  Identities=23%  Similarity=0.384  Sum_probs=67.9

Q ss_pred             CccccccCCCCCccccc-CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCcccc
Q 036691          265 CKTLASYGIKNNYVLDV-LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR  343 (426)
Q Consensus       265 ~~tL~~y~I~~~~~l~l-~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~  343 (426)
                      ..++++|.|+.-..+.+ -.-.|.|+|++ +|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++
T Consensus         7 ~~~~~~~~~~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~   85 (101)
T 3m63_B            7 HHPMSDYDIPTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVES   85 (101)
T ss_dssp             ----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTT
T ss_pred             cCCccccCCCcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHH
Confidence            35788999987777776 23346788887 89999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCEEEEEee
Q 036691          344 YNIQKHSTLHMVLA  357 (426)
Q Consensus       344 y~I~~~~ti~l~~~  357 (426)
                      |||++|++|+|+.+
T Consensus        86 ~gI~~g~tI~lv~~   99 (101)
T 3m63_B           86 YHIQDGHSVHLVKS   99 (101)
T ss_dssp             TTCCTTEEEEECCC
T ss_pred             CCCCCCCEEEEEeC
Confidence            99999999999864

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.68  E-value=8.8e-17  Score=132.05  Aligned_cols=78  Identities=41%  Similarity=0.586  Sum_probs=75.0

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      ..|+|+||+.+|+++. ++|++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|+++++||+++|++||
T Consensus        34 ~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             SCEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCS-SCBTTTTTCCTTCEEEEEECCCC-
T ss_pred             CeEEEEEEcCCCCEEE-EEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEeCCCC
Confidence            5899999999999999 99999999999999999999999999999999999999 999999999999999999999986

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.68  E-value=5.2e-17  Score=129.91  Aligned_cols=79  Identities=22%  Similarity=0.242  Sum_probs=75.6

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      +..|+|+|++. |++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|+|+++++|||+++++||.
T Consensus        15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~   93 (96)
T 1wx8_A           15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP   93 (96)
T ss_dssp             SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred             CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence            35699999998 99999999999999999999999999999999999999999999999999999999999999999884

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.67  E-value=1.2e-16  Score=127.59  Aligned_cols=77  Identities=17%  Similarity=0.334  Sum_probs=69.8

Q ss_pred             cCCceeEEEEcCCCceeEEE--EEcCCCcHHHHHHHH-HHHhCCCCCceEEEeCCeEeeccccccccccc-ccCcEEEEE
Q 036691           58 NLSEMKLFVKIPTNQTATVV--EAMPYHTVQNIKTMI-QVKEGIQSDQFTLVYDGKLLKEDTATMTSMNI-KSESIIHLV  133 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~--~v~~~~tV~~lK~~I-~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I-~~~s~i~l~  133 (426)
                      .++.|+|+||+++|++++ +  +|++++||.+||++| ++++|+|+++|||+|+|+.|+| +.+|++|+| ++|++|+++
T Consensus        16 ~~~~m~I~VKtl~g~~~~-i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D-~~tL~dy~I~~~g~ti~lm   93 (98)
T 4a20_A           16 DNAAVHLTLKKIQAPKFS-IEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHD-NLFLSDLKVTPANSTITVM   93 (98)
T ss_dssp             --CCEEEEEEECSSSCEE-EEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECT-TCBGGGSCCBTTBCEEEEE
T ss_pred             CCCCEEEEEEcCCCCEEE-EEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcC-cCCHHHcCcCCCCCEEEEE
Confidence            357899999999999877 6  566999999999999 8889999999999999999999 999999999 999999997


Q ss_pred             eec
Q 036691          134 FCP  136 (426)
Q Consensus       134 ~~~  136 (426)
                      ++.
T Consensus        94 vsk   96 (98)
T 4a20_A           94 IKP   96 (98)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            753

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.67  E-value=2e-16  Score=123.41  Aligned_cols=76  Identities=18%  Similarity=0.329  Sum_probs=71.4

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHH---hCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVK---EGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~---~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      +..|+|+||+.+|+++. ++|++++||.+||++|+++   +|+|+++|+|+|+|+.|+| +.+|++|+|++|++||++.+
T Consensus         3 ~~~m~i~vk~~~g~~~~-~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~i~~g~~i~l~~~   80 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD-DVPIRDYRIDEKNFVVVMVT   80 (85)
T ss_dssp             -CCEEEEEEETTSCEEE-EEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCT-TSBGGGGCCCTTSEEEEEEC
T ss_pred             CceEEEEEEECCCCEEE-EEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcC-CCCHHHcCCCCCCEEEEEEc
Confidence            57899999999999999 9999999999999999998   8999999999999999999 99999999999999999876


Q ss_pred             c
Q 036691          136 P  136 (426)
Q Consensus       136 ~  136 (426)
                      .
T Consensus        81 ~   81 (85)
T 2wyq_A           81 K   81 (85)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.67  E-value=1.8e-16  Score=129.13  Aligned_cols=78  Identities=19%  Similarity=0.255  Sum_probs=74.5

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ..|+|+|++.+|+++.++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+++...+
T Consensus        22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~   99 (106)
T 1ttn_A           22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ   99 (106)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            469999999999999999999999999999999999999999999999999999999999999999999999987655

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.67  E-value=2.1e-16  Score=129.60  Aligned_cols=79  Identities=16%  Similarity=0.290  Sum_probs=72.1

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHH------HhCC--CCCceEEEeCCeEeecccccccccccccC--
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQV------KEGI--QSDQFTLVYDGKLLKEDTATMTSMNIKSE--  127 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~------~~gi--p~~~q~L~~~g~~L~d~~~tL~~y~I~~~--  127 (426)
                      +.+.|+|+||+++|++++ ++|++++||.+||++|++      ++|+  |+++|||+|+|++|+| +.||++|+|+.+  
T Consensus        13 ~~~~m~I~vKtl~G~t~~-lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD-~~TL~~y~I~~~~~   90 (116)
T 1wgh_A           13 PADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG-NVTLGALKLPFGKT   90 (116)
T ss_dssp             CSSSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECS-SCBTTTTTCCSSCE
T ss_pred             CCCeEEEEEEeCCCCEEE-EEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCC-CCcHHHcCCCCCCc
Confidence            457899999999999999 999999999999999999      7785  6999999999999999 999999999766  


Q ss_pred             cEEEEEeeccc
Q 036691          128 SIIHLVFCPKE  138 (426)
Q Consensus       128 s~i~l~~~~~~  138 (426)
                      +++||++|+..
T Consensus        91 ~tlhLvlr~~~  101 (116)
T 1wgh_A           91 TVMHLVARETL  101 (116)
T ss_dssp             EEEEEEECSSC
T ss_pred             eEEEEEccCCC
Confidence            68999888764

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.67  E-value=1.2e-16  Score=130.12  Aligned_cols=75  Identities=23%  Similarity=0.302  Sum_probs=68.9

Q ss_pred             eeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccccccccc-------CcEEEEE
Q 036691           62 MKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKS-------ESIIHLV  133 (426)
Q Consensus        62 m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~-------~s~i~l~  133 (426)
                      |.+|++...++ ++. +++++++||.+||++|++++|+|+++|||+|+|+.|+| ++||++|||++       +++|||+
T Consensus         1 m~vFl~Ikr~ktTI~-ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD-~kTL~dy~I~~~ta~~q~~atl~Lv   78 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIF-TDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDD-GKTLGECGFTSQTARPQAPATVGLA   78 (118)
T ss_dssp             CEEEEEEEEBTEEEE-EEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred             CceEEEEecCCEEEE-EEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCC-cCCHHHcCCCcCcccCCCCCEEEEE
Confidence            56777777777 666 99999999999999999999999999999999999999 99999999999       9999999


Q ss_pred             eeccc
Q 036691          134 FCPKE  138 (426)
Q Consensus       134 ~~~~~  138 (426)
                      +|..|
T Consensus        79 lr~~~   83 (118)
T 4ajy_B           79 FRADD   83 (118)
T ss_dssp             ECCSS
T ss_pred             EecCC
Confidence            99743

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=2.1e-16  Score=122.10  Aligned_cols=76  Identities=24%  Similarity=0.346  Sum_probs=72.7

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      +..|+|+|++.+|+++. +++++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|++|++||+++++
T Consensus         5 ~~~m~i~vk~~~g~~~~-~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d-~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            5 SSGMQLTVKALQGRECS-LQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALAD-GKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             SSSEEEEEEETTSCEEE-EEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCT-TSBGGGGTCCSSBCCEEECCC
T ss_pred             CCcEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence            46899999999999999 99999999999999999999999999999999999999 999999999999999998875

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.67  E-value=3.6e-16  Score=119.53  Aligned_cols=71  Identities=25%  Similarity=0.462  Sum_probs=68.8

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      |+|+|++ +|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence            8899999 9999999999999999999999999999999999999999999999999999999999999865

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.66  E-value=2e-16  Score=127.91  Aligned_cols=82  Identities=17%  Similarity=0.175  Sum_probs=75.6

Q ss_pred             CCcEEEEEecCC----cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCC-CccccCCCCCCCEEEEEeec
Q 036691          284 SPFQIFVKTWGG----KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN-HVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       284 ~~m~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~-~tL~~y~I~~~~ti~l~~~~  358 (426)
                      ..|+|+|++.++    ++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+ +||++|+|++|++|||+.+.
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~   85 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence            459999999754    7999999999999999999999999999999999999999988 79999999999999999999


Q ss_pred             CCCcccC
Q 036691          359 SSRIIEL  365 (426)
Q Consensus       359 ~gg~~~~  365 (426)
                      +||....
T Consensus        86 ~gg~~~~   92 (102)
T 1v5o_A           86 NVGLRTP   92 (102)
T ss_dssp             CCCCSSC
T ss_pred             CCCCCCC
Confidence            9986533

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.66  E-value=1.3e-16  Score=131.10  Aligned_cols=81  Identities=16%  Similarity=0.194  Sum_probs=77.1

Q ss_pred             cCCceeEEEEcC---CCceeEEEEEcC-CCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           58 NLSEMKLFVKIP---TNQTATVVEAMP-YHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        58 ~~~~m~i~Vk~~---~g~~~~~~~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      .++.|+|+|+++   +|+++. ++|++ ++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++||++
T Consensus        24 ~~~~i~i~Vk~~~~~~g~~~~-l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D-~~tL~~y~I~~g~~l~l~  101 (111)
T 1we6_A           24 HPGPATIRVSKPNENDGQFME-ITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKD-NMSLAHYNVGAGEILTLS  101 (111)
T ss_dssp             CCSCEEEEECCTTCSSSCCEE-EEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCT-TSBTTTTTCSSSCEEEEE
T ss_pred             CCCcEEEEEEecccCCCcEEE-EEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCC-CCcHHHCCCCCCCEEEEE
Confidence            467899999998   899999 99998 999999999999999999999999999999999 999999999999999999


Q ss_pred             eecccee
Q 036691          134 FCPKEIL  140 (426)
Q Consensus       134 ~~~~~g~  140 (426)
                      ++++||.
T Consensus       102 ~r~~GGk  108 (111)
T 1we6_A          102 LRERSGP  108 (111)
T ss_dssp             CSSCCSS
T ss_pred             EEcCCCC
Confidence            9999873

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=1.8e-16  Score=126.00  Aligned_cols=65  Identities=17%  Similarity=0.210  Sum_probs=61.7

Q ss_pred             CceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           71 NQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        71 g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      |++++ ++|++++||.+||++|++++|+|+++|+|+|+|++|+| +.||++|+|++|++| ++++++|
T Consensus        29 ~~~~~-lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D-~~TL~~y~I~~gsti-~vl~lrg   93 (100)
T 1wju_A           29 DRKNL-LETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQL-GKTLEEQGVAHNVKA-MVLELKQ   93 (100)
T ss_dssp             SSSEE-EEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCT-TSBHHHHTCCSSEEE-EEECCCC
T ss_pred             CcEEE-EEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCC-CCcHHHcCCCCCCEE-EEEEECC
Confidence            77899 99999999999999999999999999999999999999 999999999999999 5677775

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.47  E-value=7e-18  Score=128.88  Aligned_cols=75  Identities=24%  Similarity=0.492  Sum_probs=72.7

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      |+|+||+.+|+++. +++++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++||+++|++|
T Consensus         1 M~i~Vk~~~g~~~~-~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d-~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSYGFP-VEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPN-HLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            89999999999999 99999999999999999999999999999999999999 99999999999999999999875

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=4.2e-16  Score=130.46  Aligned_cols=80  Identities=23%  Similarity=0.311  Sum_probs=71.7

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      ...|+|+|++. |++++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.||++|||++|++|+|+.+++||.
T Consensus        30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~  108 (125)
T 1j8c_A           30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS  108 (125)
T ss_dssp             CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred             CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence            35699999998 99999999999999999999999999999999999999999999999999999999999999999885


Q ss_pred             c
Q 036691          363 I  363 (426)
Q Consensus       363 ~  363 (426)
                      .
T Consensus       109 ~  109 (125)
T 1j8c_A          109 S  109 (125)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.65  E-value=6.5e-16  Score=124.55  Aligned_cols=78  Identities=24%  Similarity=0.371  Sum_probs=73.6

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      +..|+|+|++. |++++++|++++||++||++|++++|+|++.|+|+|+|+.|+|+.||++|||++|++|+|+.+++..
T Consensus        23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~  100 (101)
T 2klc_A           23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR  100 (101)
T ss_dssp             CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred             CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence            45799999998 8999999999999999999999999999999999999999999999999999999999999987643

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.65  E-value=3.6e-16  Score=129.19  Aligned_cols=81  Identities=22%  Similarity=0.335  Sum_probs=76.2

Q ss_pred             CCCCcEEEEEec----------CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCE
Q 036691          282 LPSPFQIFVKTW----------GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHST  351 (426)
Q Consensus       282 ~~~~m~i~v~~~----------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~t  351 (426)
                      .+.+++|.|+.+          +|++++++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+.||++|+|++|++
T Consensus        22 ~~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~  101 (115)
T 1we7_A           22 NKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAV  101 (115)
T ss_dssp             CCSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCE
T ss_pred             CCCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCE
Confidence            567788888876          4789999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeecCCCc
Q 036691          352 LHMVLAPSSRI  362 (426)
Q Consensus       352 i~l~~~~~gg~  362 (426)
                      |||+++++||.
T Consensus       102 i~lv~rl~GGk  112 (115)
T 1we7_A          102 IHLALKERSGP  112 (115)
T ss_dssp             EEEEECCCSCC
T ss_pred             EEEEEEcCCCC
Confidence            99999999984

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=5.5e-16  Score=123.62  Aligned_cols=74  Identities=20%  Similarity=0.386  Sum_probs=70.7

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHH---hCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVK---EGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~---~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      |+|+||+.+|+++. ++|++++||.+||++|+++   +|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++.+..
T Consensus         1 M~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D-~~tL~~ygI~~g~~i~l~~~~~   77 (95)
T 1uel_A            1 MQVTLKTLQQQTFK-IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILND-DTALKEYKIDEKNFVVVMVTKP   77 (95)
T ss_dssp             CEEEEEETTCCEEE-EECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCT-TSBGGGGTCCSSSEEEEEESSC
T ss_pred             CEEEEEeCCCCEEE-EEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCC-cCcHHHCCCCCCCEEEEEEeCC
Confidence            89999999999999 9999999999999999999   8999999999999999999 9999999999999999988754

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.65  E-value=1.1e-17  Score=144.34  Aligned_cols=78  Identities=49%  Similarity=0.656  Sum_probs=0.0

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      |+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|||+++++||+.
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGgK   78 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGK   78 (152)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCCc
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999999965

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.65  E-value=3.7e-16  Score=125.73  Aligned_cols=79  Identities=23%  Similarity=0.392  Sum_probs=74.2

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      .+..|+|+||+.+|+ +. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+++.+++
T Consensus        19 ~~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~ygI~~gstI~l~~r~~   95 (100)
T 1yqb_A           19 SPHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKD-PDSLAQCGVRDGLTVHLVIKRQ   95 (100)
T ss_dssp             CTTEEEEEEECSSCE-EE-EEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBHHHHTCCTTCEEEEEECCC
T ss_pred             CCCeEEEEEEcCCCc-EE-EEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCC-cCcHHHCCCCCCCEEEEEEcCC
Confidence            357899999999886 67 99999999999999999999999999999999999999 9999999999999999999987


Q ss_pred             ce
Q 036691          138 EI  139 (426)
Q Consensus       138 ~g  139 (426)
                      ++
T Consensus        96 ~~   97 (100)
T 1yqb_A           96 HR   97 (100)
T ss_dssp             CS
T ss_pred             CC
Confidence            65

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.65  E-value=7e-16  Score=123.66  Aligned_cols=73  Identities=23%  Similarity=0.179  Sum_probs=68.9

Q ss_pred             CcEEEEEecCC--cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCC-CCCCEEEEEee
Q 036691          285 PFQIFVKTWGG--KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI-QKHSTLHMVLA  357 (426)
Q Consensus       285 ~m~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I-~~~~ti~l~~~  357 (426)
                      .|+++|++..+  .+++++|+|++||++||++|++++|+|+++|||+|+|+.++|++||.+||| ++|+++||++.
T Consensus        24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred             EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence            48899999875  799999999999999999999999999999999999999999999999999 69999999874

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.64  E-value=2.3e-16  Score=128.40  Aligned_cols=74  Identities=20%  Similarity=0.351  Sum_probs=70.1

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      |+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++++..
T Consensus         2 m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~~~i~~g~~i~lv~~~~   75 (106)
T 3m62_B            2 VSLTFKNFKKEKVP-LDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQD-SKTVSECGLKDGDQVVFMVSQK   75 (106)
T ss_dssp             -CEEEECTTCCEEE-ECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCT-TSBTTTTTCCTTCEEEEECCC-
T ss_pred             EEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCC-cCCHHHcCCCCCCEEEEEEcCC
Confidence            89999999999999 99999999999999999999999999999999999999 9999999999999999988754

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.64  E-value=3.9e-16  Score=129.85  Aligned_cols=80  Identities=16%  Similarity=0.262  Sum_probs=72.7

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHH------HhCCC--CCceEEEeCCeEeecccccccccccccCc-
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQV------KEGIQ--SDQFTLVYDGKLLKEDTATMTSMNIKSES-  128 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~------~~gip--~~~q~L~~~g~~L~d~~~tL~~y~I~~~s-  128 (426)
                      +...|.|+||+++|++++ ++|++++||.+||++|++      ++|+|  +++|||+|+|+.|+| +.||++|+|+.++ 
T Consensus        14 ~~~~m~I~vktl~G~~~~-lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD-~~TL~~y~I~~~~~   91 (125)
T 2gow_A           14 PADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG-NVTLGALKLPFGKT   91 (125)
T ss_dssp             CTTCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEES-SCBTGGGCCCTTSE
T ss_pred             CCCeEEEEEEeCCCCEEE-EEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCC-CCcHHHcCCCCCCc
Confidence            346799999999999999 999999999999999999      78884  899999999999999 9999999999665 


Q ss_pred             -EEEEEeeccce
Q 036691          129 -IIHLVFCPKEI  139 (426)
Q Consensus       129 -~i~l~~~~~~g  139 (426)
                       ++||++|++++
T Consensus        92 ~tlhlv~r~~~~  103 (125)
T 2gow_A           92 TVMHLVARETLP  103 (125)
T ss_dssp             EEEEEEECSCCS
T ss_pred             eEEEEEecCCCC
Confidence             78999998754

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.64  E-value=5.5e-16  Score=126.23  Aligned_cols=79  Identities=24%  Similarity=0.332  Sum_probs=74.9

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      ..|+|+|++.+|+ +.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|||+.++++|..
T Consensus        16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~~   94 (106)
T 1wx7_A           16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRAM   94 (106)
T ss_dssp             SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCSC
T ss_pred             ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCCC
Confidence            4699999999886 799999999999999999999999999999999999999999999999999999999999998854

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.63  E-value=3e-16  Score=125.46  Aligned_cols=79  Identities=19%  Similarity=0.278  Sum_probs=75.0

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      +..|+|+||+. |+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++||++.++++
T Consensus        15 ~~~m~i~Vk~~-g~~~~-~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~i~l~~~~~~   91 (96)
T 1wx8_A           15 SRIIRVSVKTP-QDCHE-FFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRD-QDILSQRGILDGSTVHVVVRSHS   91 (96)
T ss_dssp             SCEEEEEEECS-SSEEE-EEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCT-TSCHHHHTCCTTEEEECCBCCSS
T ss_pred             CCcEEEEEEEC-CeEEE-EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCC-cCCHHHCCCCCCCEEEEEEeCCC
Confidence            46799999998 99999 99999999999999999999999999999999999999 99999999999999999999887


Q ss_pred             ee
Q 036691          139 IL  140 (426)
Q Consensus       139 g~  140 (426)
                      |.
T Consensus        92 g~   93 (96)
T 1wx8_A           92 GP   93 (96)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.63  E-value=1.4e-15  Score=116.25  Aligned_cols=72  Identities=29%  Similarity=0.448  Sum_probs=68.9

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      .|+|+|++ +|+++. +++++++||.+||++|++..|+|+++|+|+|+|+.|+| +.+|++|+|++|++||+..+
T Consensus         4 ~m~i~vk~-~g~~~~-~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d-~~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            4 SLNIHIKS-GQDKWE-VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKD-DQTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEEE-TTEEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCC-CCCHHHcCCCCCCEEEEEEc
Confidence            48999999 999999 99999999999999999999999999999999999999 89999999999999999765

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.62  E-value=3.9e-16  Score=124.89  Aligned_cols=73  Identities=22%  Similarity=0.271  Sum_probs=66.1

Q ss_pred             CCCcEEEEEecCCc--EEEEEEcCCCcHHHHHHHHHhH-hCCC-CcceEEEEcCeecCCCCccccC--CCCCCCEEEEE
Q 036691          283 PSPFQIFVKTWGGK--TITLDVQPYNTVQDVKVKLFDK-LQTP-LHLQSIVFAGKRLFENHVLARY--NIQKHSTLHMV  355 (426)
Q Consensus       283 ~~~m~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~-~gip-~~~q~L~~~gk~L~d~~tL~~y--~I~~~~ti~l~  355 (426)
                      +..|+|+|++++|+  ++++++++++||++||++|+++ .|+| +++|||+|+||.|+|+.||++|  +|++++||||+
T Consensus        21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            45799999999998  6799999999999999999996 5666 5999999999999999999999  99999999985

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.62  E-value=7.8e-16  Score=125.29  Aligned_cols=78  Identities=14%  Similarity=0.299  Sum_probs=73.9

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      ...|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|||+.+.+.
T Consensus        21 ~~~m~I~Vk~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~ygI~~g~ti~lv~~~~~   98 (106)
T 1ttn_A           21 GYECQLRLRLSTGKDLK-LVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTD-KMKFEELKIPKDYVVQVIVSQPV   98 (106)
T ss_dssp             CCSEEEEEEETTTEEEE-EEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCT-TSHHHHCCCSSSCEEEEECCCSS
T ss_pred             CCeEEEEEEcCCCCEEE-EEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEeCCC
Confidence            46799999999999999 99999999999999999999999999999999999999 99999999999999999887654

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.62  E-value=1.6e-15  Score=122.24  Aligned_cols=80  Identities=26%  Similarity=0.398  Sum_probs=73.1

Q ss_pred             EecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           56 HQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        56 ~~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      ++.+..|+|+||+. |+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++.+
T Consensus        20 ~~~~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~gI~~g~~I~l~~~   96 (101)
T 2klc_A           20 QGHPKIMKVTVKTP-KEKEE-FAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKD-QDTLSQHGIHDGLTVHLVIK   96 (101)
T ss_dssp             ---CCCEEEEEECS-SCEEE-EEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECT-TCCTGGGTCCTTCEEEEEEC
T ss_pred             CCCCCeEEEEEEeC-CcEEE-EEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCC-cCcHHHcCCCCCCEEEEEEc
Confidence            44568899999998 89999 99999999999999999999999999999999999999 99999999999999999888


Q ss_pred             ccc
Q 036691          136 PKE  138 (426)
Q Consensus       136 ~~~  138 (426)
                      +++
T Consensus        97 ~~~   99 (101)
T 2klc_A           97 TQN   99 (101)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            653

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.62  E-value=8e-16  Score=124.32  Aligned_cols=80  Identities=20%  Similarity=0.329  Sum_probs=73.2

Q ss_pred             CceeEEEEcCCC----ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           60 SEMKLFVKIPTN----QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        60 ~~m~i~Vk~~~g----~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      ..|+|+|++..|    +++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+..+|++|+|+++++||++.+
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~-i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~   84 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFS-LQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEE-EEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             CeEEEEEEECCCCcCceEEE-EEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence            469999999754    7898 99999999999999999999999999999999999998347999999999999999999


Q ss_pred             cccee
Q 036691          136 PKEIL  140 (426)
Q Consensus       136 ~~~g~  140 (426)
                      .++|-
T Consensus        85 ~~gg~   89 (102)
T 1v5o_A           85 DNVGL   89 (102)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            88763

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.61  E-value=2.1e-15  Score=126.18  Aligned_cols=79  Identities=27%  Similarity=0.358  Sum_probs=71.4

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      ...|+|+||+. |+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+|+.+.++
T Consensus        30 ~~~m~I~Vk~~-g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~dygI~~gstI~lv~~~~g  106 (125)
T 1j8c_A           30 PKIIKVTVKTP-KEKEE-FAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKD-QDTLIQHGIHDGLTVHLVIKRDP  106 (125)
T ss_dssp             CCCEEEEEECS-SCEEE-EEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEEST-TSCGGGTTCSSSEEEEEEEC---
T ss_pred             CCcEEEEEEeC-CeEEE-EEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEeccCC
Confidence            36799999998 99999 99999999999999999999999999999999999998 99999999999999999999887


Q ss_pred             ee
Q 036691          139 IL  140 (426)
Q Consensus       139 g~  140 (426)
                      |.
T Consensus       107 g~  108 (125)
T 1j8c_A          107 NS  108 (125)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.61  E-value=1.5e-15  Score=125.55  Aligned_cols=79  Identities=22%  Similarity=0.349  Sum_probs=71.9

Q ss_pred             CceeEEEEcC----------CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcE
Q 036691           60 SEMKLFVKIP----------TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESI  129 (426)
Q Consensus        60 ~~m~i~Vk~~----------~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~  129 (426)
                      +.++|.|+.+          +|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++
T Consensus        24 ~~i~l~V~~p~~~~~~~~~L~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D-~~tL~~y~i~~g~~  101 (115)
T 1we7_A           24 GPVSIKVQVPNMQDKTEWKLNGQGLV-FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKD-SNSLAYYNMASGAV  101 (115)
T ss_dssp             SCEEEEEEECCCSSSCSSCCSSEEEE-EEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECT-TSBHHHHTCCSSCE
T ss_pred             CCEEEEEEcCCCccccccccCCeEEE-EEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCC-CCCHHHCCCCCCCE
Confidence            4555666554          578999 99999999999999999999999999999999999999 99999999999999


Q ss_pred             EEEEeecccee
Q 036691          130 IHLVFCPKEIL  140 (426)
Q Consensus       130 i~l~~~~~~g~  140 (426)
                      |||+++++||.
T Consensus       102 i~lv~rl~GGk  112 (115)
T 1we7_A          102 IHLALKERSGP  112 (115)
T ss_dssp             EEEEECCCSCC
T ss_pred             EEEEEEcCCCC
Confidence            99999999874

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.61  E-value=4.8e-17  Score=137.05  Aligned_cols=77  Identities=40%  Similarity=0.585  Sum_probs=0.4

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecccee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEIL  140 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~  140 (426)
                      |+|+|++.+|+++. ++|++++||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++++++||.
T Consensus         1 M~I~Vk~~~G~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~~~I~~gsti~l~~rl~GG~   77 (128)
T 3u5e_m            1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGGI   77 (128)
T ss_dssp             ------------------------------------------------------------------------------C
T ss_pred             CEEEEEeCCCCEEE-EEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCC-CCchhhhccCCCCEEEEEEEcCCCC
Confidence            78999999999999 99999999999999999999999999999999999999 9999999999999999999999874

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.61  E-value=1e-15  Score=122.41  Aligned_cols=74  Identities=23%  Similarity=0.389  Sum_probs=65.7

Q ss_pred             cCCceeEEEEcCCCc--eeEEEEEcCCCcHHHHHHHHHHH-hCCC-CCceEEEeCCeEeeccccccccc--ccccCcEEE
Q 036691           58 NLSEMKLFVKIPTNQ--TATVVEAMPYHTVQNIKTMIQVK-EGIQ-SDQFTLVYDGKLLKEDTATMTSM--NIKSESIIH  131 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~--~~~~~~v~~~~tV~~lK~~I~~~-~gip-~~~q~L~~~g~~L~d~~~tL~~y--~I~~~s~i~  131 (426)
                      .++.|+|+||+++|+  +++ ++|++++||.+||++|+++ +|.| +++|||+|+|+.|+| +.+|++|  +|+++++||
T Consensus        20 ~~~~m~I~VK~~~g~~~~i~-l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D-~~tL~~y~~~I~~~~tih   97 (99)
T 2kdb_A           20 QGHPVTLIIKAPNQKYSDQT-ISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPD-HLQLKDILRKQDEYHMVH   97 (99)
T ss_dssp             ---CEEEEEECTTSSSCCEE-EEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECT-TSBTHHHHTTTCSEEEEE
T ss_pred             CCCeEEEEEEcCCCCEEEEE-EEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCC-CCCHHHHhcCCCCCCEEE
Confidence            346899999999998  678 9999999999999999996 5666 599999999999999 9999999  999999999


Q ss_pred             EE
Q 036691          132 LV  133 (426)
Q Consensus       132 l~  133 (426)
                      |+
T Consensus        98 Lv   99 (99)
T 2kdb_A           98 LV   99 (99)
T ss_dssp             EC
T ss_pred             eC
Confidence            84

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.60  E-value=2.6e-15  Score=122.25  Aligned_cols=78  Identities=23%  Similarity=0.393  Sum_probs=73.6

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      +..|+|+||+.+|+ +. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|||+.++++
T Consensus        15 ~~~m~I~Vk~~~g~-~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~gi~~g~~i~l~~~~~~   91 (106)
T 1wx7_A           15 PHLIKVTVKTPKDK-ED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKD-PDSLAQCGVRDGLTVHLVIKRQH   91 (106)
T ss_dssp             SSEEEEEEECSSCE-EE-EEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCT-TSCHHHHTCCTTEEEEEEECCCC
T ss_pred             CceEEEEEEeCCCc-EE-EEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCC-cCcHHHcCCCCCCEEEEEEcCCC
Confidence            46799999998886 67 99999999999999999999999999999999999999 99999999999999999999887


Q ss_pred             e
Q 036691          139 I  139 (426)
Q Consensus       139 g  139 (426)
                      +
T Consensus        92 ~   92 (106)
T 1wx7_A           92 R   92 (106)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=122.23  Aligned_cols=76  Identities=17%  Similarity=0.240  Sum_probs=69.9

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE--cCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF--AGKRLFENHVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~--~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      .+|.+++..++|+++++++++++||++||++|++++|||+++|+|+|  +|+ |+|+.+|++|+|++|++|||+++-..
T Consensus         7 ~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~   84 (100)
T 2dzm_A            7 GRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP   84 (100)
T ss_dssp             CCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred             cceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence            36889999999999999999999999999999999999999999986  566 99999999999999999999886443

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.60  E-value=7.1e-17  Score=139.27  Aligned_cols=78  Identities=40%  Similarity=0.547  Sum_probs=0.0

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS  141 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~  141 (426)
                      |+|+|++++|+++. ++|++++||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|+|+++++|+|+++++||..
T Consensus         1 MqI~VK~l~G~~~~-l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~dygI~~gstL~Lvlrl~GGgK   78 (152)
T 3u5c_f            1 MQIFVKTLTGKTIT-LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGGGK   78 (152)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEE-EEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccc-cCcHHHcCCCCCCEEEEEeeccCCCc
Confidence            79999999999999 99999999999999999999999999999999999999 99999999999999999999998853

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.60  E-value=3.7e-15  Score=119.45  Aligned_cols=73  Identities=18%  Similarity=0.174  Sum_probs=67.9

Q ss_pred             ceeEEEEcCCC--ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccccccccccc-ccCcEEEEEee
Q 036691           61 EMKLFVKIPTN--QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNI-KSESIIHLVFC  135 (426)
Q Consensus        61 ~m~i~Vk~~~g--~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I-~~~s~i~l~~~  135 (426)
                      .|+|+|+...+  .+++ ++|+|++||.+||++|++++|+||++|||+|+|+.++| ++||++||| ++|+++||++.
T Consensus        24 ~l~v~v~d~~s~~~~i~-l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D-~~TL~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           24 RLWVSVEDAQMHTVTIW-LTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARD-QETLHSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             EEEEEEEESSSCCEEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECT-TCBTGGGTCCSTTCEEEEEEC
T ss_pred             EEEEEEEccCCCCceEE-EEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccC-cCcHHHcCCCCCCCEEEEEEE
Confidence            68899999874  7888 99999999999999999999999999999999998888 999999999 59999999764

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.58  E-value=5.6e-15  Score=117.74  Aligned_cols=76  Identities=20%  Similarity=0.282  Sum_probs=71.2

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCC-CccccCCCCCCCEEEEEeecCCCc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFEN-HVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~-~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      ..|+|+|++++|+++.++|++++||++||++|+.++   +++|+|+|+|+.|+|+ .+|++|||++|++|||+.+..+..
T Consensus         6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~~   82 (95)
T 1wia_A            6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGAA   82 (95)
T ss_dssp             CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCCC
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCCC
Confidence            469999999999999999999999999999999988   8999999999999999 999999999999999999876553

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.58  E-value=6.6e-15  Score=114.80  Aligned_cols=71  Identities=28%  Similarity=0.404  Sum_probs=66.7

Q ss_pred             EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      .+++++++|+++++++++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++..
T Consensus        13 ~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence            35677789999999999999999999999999999999999999999999999999999999999998753

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.57  E-value=1.7e-16  Score=140.50  Aligned_cols=73  Identities=18%  Similarity=0.191  Sum_probs=1.2

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      |+|+|++++|++++++|++++||++||++|++++|||+++|+|+|+|++|+|+.||+     +++||||++|++||..
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~~   73 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGKK   73 (189)
T ss_dssp             ----------------------------------------------------------------------------CC
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCcc
Confidence            889999999999999999999999999999999999999999999999999999999     9999999999999965

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.57  E-value=4.2e-15  Score=117.24  Aligned_cols=73  Identities=22%  Similarity=0.243  Sum_probs=69.2

Q ss_pred             CCcEEEEEecCCcEEEE-EEcCCCcHHHHHHHHHhHhCCCCcceEEE---EcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          284 SPFQIFVKTWGGKTITL-DVQPYNTVQDVKVKLFDKLQTPLHLQSIV---FAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      ..|+|+|+. .|+++++ ++++++||++||++|++++|+|+++|+|+   |+|+.|+|+.+|++|+|++|++|+|+..
T Consensus         6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~   82 (90)
T 1v5t_A            6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred             ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence            468999996 8999999 99999999999999999999999999999   9999999999999999999999999754

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.56  E-value=4.4e-15  Score=118.46  Aligned_cols=73  Identities=16%  Similarity=0.206  Sum_probs=68.0

Q ss_pred             CCcEEEEEecCCcEE-EEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          284 SPFQIFVKTWGGKTI-TLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      ..|+|+|+. .|+++ .+++++++||++||++|++++|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+...
T Consensus         6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~   79 (96)
T 1wgg_A            6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA   79 (96)
T ss_dssp             CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred             cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence            458999995 78999 6999999999999999999999999999999999999999 9999999999999997643

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.55  E-value=1.3e-14  Score=118.19  Aligned_cols=76  Identities=22%  Similarity=0.291  Sum_probs=70.3

Q ss_pred             CCcEEEEEecCC---cEEEEEE--------cC-CCcHHHHHHHHHhHh--CCCCcc-eEEEEcCeecCCCCccccCCCCC
Q 036691          284 SPFQIFVKTWGG---KTITLDV--------QP-YNTVQDVKVKLFDKL--QTPLHL-QSIVFAGKRLFENHVLARYNIQK  348 (426)
Q Consensus       284 ~~m~i~v~~~~g---~~~~l~v--------~~-~~tV~~lK~~i~~~~--gip~~~-q~L~~~gk~L~d~~tL~~y~I~~  348 (426)
                      ..|+|+|++.++   +++++++        ++ ++||++||++|+.++  |+|+++ |+|+|+|+.|+|++||++|+|++
T Consensus        11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~   90 (107)
T 1x1m_A           11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP   90 (107)
T ss_dssp             CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred             CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence            468999999998   8999995        44 499999999999999  999999 99999999999999999999999


Q ss_pred             CCEEEEEeecC
Q 036691          349 HSTLHMVLAPS  359 (426)
Q Consensus       349 ~~ti~l~~~~~  359 (426)
                      |++|||+.+..
T Consensus        91 g~~i~lv~~~~  101 (107)
T 1x1m_A           91 GSTVHVLRKSW  101 (107)
T ss_dssp             TCEEEEEESSC
T ss_pred             CCEEEEEeCCC
Confidence            99999998764

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.9e-14  Score=116.30  Aligned_cols=77  Identities=17%  Similarity=0.202  Sum_probs=70.8

Q ss_pred             CCcEEEEE-ecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691          284 SPFQIFVK-TWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       284 ~~m~i~v~-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      ..+.|.|+ ...|..++++++++.||.+||+.++.+.++|+++|+|+|+||.|+|+.||.+|||++|.||||+.+-..
T Consensus        14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~   91 (118)
T 2daf_A           14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTN   91 (118)
T ss_dssp             SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESC
T ss_pred             ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCC
Confidence            35677777 667889999999999999999999999999999999999999999999999999999999999987543

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.53  E-value=1.3e-14  Score=114.47  Aligned_cols=75  Identities=19%  Similarity=0.281  Sum_probs=70.0

Q ss_pred             CCceeEEEEcCCCceeEEE-EEcCCCcHHHHHHHHHHHhCCCCCceEEE---eCCeEeecccccccccccccCcEEEEEe
Q 036691           59 LSEMKLFVKIPTNQTATVV-EAMPYHTVQNIKTMIQVKEGIQSDQFTLV---YDGKLLKEDTATMTSMNIKSESIIHLVF  134 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~-~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~d~~~tL~~y~I~~~s~i~l~~  134 (426)
                      ...|+|+||+ .|+++. + ++++++||.+||++|++++|+|+++|+|+   |+|+.|+| +.+|++|+|+++++|+|+.
T Consensus         5 ~~~m~i~Vk~-~g~~~~-i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D-~~~L~~~~i~~g~~l~l~~   81 (90)
T 1v5t_A            5 SSGLPIIVKW-GGQEYS-VTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEN-DVKLGALKLKPNTKIMMMG   81 (90)
T ss_dssp             CCSCCEEEEE-TTEEEE-ECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCT-TSBHHHHTCCTTEEEEEEC
T ss_pred             CceEEEEEEE-CCEEEE-EEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCC-CCCHHHcCCCCCCEEEEEe
Confidence            3579999997 899999 9 99999999999999999999999999999   99999999 9999999999999999965


Q ss_pred             ec
Q 036691          135 CP  136 (426)
Q Consensus       135 ~~  136 (426)
                      ..
T Consensus        82 ~~   83 (90)
T 1v5t_A           82 TR   83 (90)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.52  E-value=3.6e-14  Score=112.63  Aligned_cols=72  Identities=15%  Similarity=0.063  Sum_probs=64.5

Q ss_pred             CCcEEEEEecCC--cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEc--Ce---ec-CCCCccccCCCCCCCEEEEE
Q 036691          284 SPFQIFVKTWGG--KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFA--GK---RL-FENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       284 ~~m~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~--gk---~L-~d~~tL~~y~I~~~~ti~l~  355 (426)
                      ..+.|+|+...+  +++++++++++||++||++|+.++|+|+++|||+|+  |+   .| +|++||++|||++|++|||+
T Consensus        14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv   93 (95)
T 2kjr_A           14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV   93 (95)
T ss_dssp             CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred             CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence            456788887665  489999999999999999999999999999999998  45   45 89999999999999999986

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.3e-14  Score=116.00  Aligned_cols=74  Identities=15%  Similarity=0.174  Sum_probs=68.2

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe--CCeEeecccccccccccccCcEEEEEeec
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY--DGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      .+|.++++..+|++++ ++|++++||++||++|++++||||++|+|+|  +|+ |+| +.+|++|+|++|+++||+++.
T Consensus         7 ~~m~~~~vk~~Gk~~~-v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D-~~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            7 GRMLDFRVEYRDRNVD-VVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VED-STVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             CCEEEEEEECSSCEEE-EEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCT-TSBHHHHCCCSEEEEEECCSS
T ss_pred             cceEEEEEEeCCeEEE-EEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCC-cCCHHHcCCCCCCEEEEEecC
Confidence            3688888888999999 9999999999999999999999999999997  666 888 999999999999999998764

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.52  E-value=4e-14  Score=112.10  Aligned_cols=75  Identities=23%  Similarity=0.313  Sum_probs=68.8

Q ss_pred             CCcEEEEEecCCcEEEEEEcCC-----CcHHHHHHHHHhHhCCCCcceEEEEcCeecCC-CCccccCCCCCCCEEEEEee
Q 036691          284 SPFQIFVKTWGGKTITLDVQPY-----NTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFE-NHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~-----~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d-~~tL~~y~I~~~~ti~l~~~  357 (426)
                      ..|.|+|++ .|++++++++++     .||++||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|||+.+
T Consensus         6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~   84 (92)
T 1wxv_A            6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   84 (92)
T ss_dssp             SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence            468999998 589999999995     99999999999999999999999999999998 66899999999999999875


Q ss_pred             cC
Q 036691          358 PS  359 (426)
Q Consensus       358 ~~  359 (426)
                      ..
T Consensus        85 ~~   86 (92)
T 1wxv_A           85 KN   86 (92)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.52  E-value=8.9e-16  Score=135.86  Aligned_cols=73  Identities=22%  Similarity=0.183  Sum_probs=1.0

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccceee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEILS  141 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~~  141 (426)
                      |+|+|++++|++++ ++|++++||.+||++|++++|+|+++|+|+|+|++|+| +.+|+     ++|||||++|++||..
T Consensus         1 MqI~VKtL~Gktit-LeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD-~~TLs-----~~STLhLvlRLrGG~~   73 (189)
T 2xzm_9            1 MQVQVKTLEGETKI-YTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPN-TELVT-----DDVTYYLSLKLLGGKK   73 (189)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             CEEEEEcCCCCEEE-EEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCC-CCccc-----CCCEEEEEEecCCCcc
Confidence            89999999999999 99999999999999999999999999999999999999 99998     8999999999999854

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.52  E-value=4e-14  Score=112.12  Aligned_cols=80  Identities=9%  Similarity=0.201  Sum_probs=77.0

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      ..|+|.|++.+|+.+.++|.++++++.|+++++++.|+|++++||+|+|++|.++.|+++|++++|++|+++++++||..
T Consensus         6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~~   85 (94)
T 2io1_B            6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVP   85 (94)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESCC
T ss_pred             CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999954

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.52  E-value=2.7e-14  Score=113.76  Aligned_cols=75  Identities=27%  Similarity=0.417  Sum_probs=70.0

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeeccc-ccccccccccCcEEEEEeecc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDT-ATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~-~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      ...|+|+||+.+|+.+. ++|++++||.+||++|++++   +++|+|+|+|+.|+| + .+|++|+|++|++||++.+.+
T Consensus         5 ~~~m~i~Vk~~~g~~~~-~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D-~~~tL~~y~i~~g~~i~l~~~~~   79 (95)
T 1wia_A            5 SSGINVRLKFLNDTEEL-AVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQD-PARTLSSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             CCSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCC-SSCBTTTTTCCTTEEEEEECCCC
T ss_pred             CCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccC-CcCCHHHcCCCCCCEEEEEECCC
Confidence            35799999999999999 99999999999999999987   899999999999999 7 999999999999999988765


Q ss_pred             c
Q 036691          138 E  138 (426)
Q Consensus       138 ~  138 (426)
                      .
T Consensus        80 ~   80 (95)
T 1wia_A           80 G   80 (95)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.51  E-value=4.2e-14  Score=134.94  Aligned_cols=78  Identities=50%  Similarity=0.741  Sum_probs=73.1

Q ss_pred             CCCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          282 LPSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       282 ~~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      .+..|+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|+++++|||++|+|
T Consensus       230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr  307 (307)
T 3ai5_A          230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  307 (307)
T ss_dssp             SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            467899999999999999999999999999999999999999999999999999999999999999999999999875

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.51  E-value=1.8e-14  Score=114.88  Aligned_cols=73  Identities=16%  Similarity=0.172  Sum_probs=68.2

Q ss_pred             CceeEEEEcCCCcee-EEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           60 SEMKLFVKIPTNQTA-TVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~-~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      ..|+|+||+ .|+++ . +++++++||.+||++|++++|+|+++|+|+|.|+.|+| + +|++|+|+++++|+|+...
T Consensus         6 ~~m~i~Vk~-~g~~~~~-l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D-~-tL~~~~I~~g~~i~l~~~~   79 (96)
T 1wgg_A            6 SGYSVTVKW-GKEKFEG-VELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKD-D-DWGNIKMKNGMTVLMMGSA   79 (96)
T ss_dssp             CEEEEEEEE-TTEEEEE-EEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCS-S-CCCSCCCCSSCEEECCCCC
T ss_pred             cEEEEEEEE-CCEEEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCC-C-CHHHCCCCCCCEEEEEecc
Confidence            578999997 78999 7 99999999999999999999999999999999999999 7 9999999999999996653

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=1.4e-14  Score=113.56  Aligned_cols=70  Identities=21%  Similarity=0.248  Sum_probs=64.8

Q ss_pred             CcEEEEEecCCcEE--EE-EEcCCCcHHHHHHHHHhH-hCCCCcceEEEEc--CeecCCCCccccCCCCCCCEEEE
Q 036691          285 PFQIFVKTWGGKTI--TL-DVQPYNTVQDVKVKLFDK-LQTPLHLQSIVFA--GKRLFENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       285 ~m~i~v~~~~g~~~--~l-~v~~~~tV~~lK~~i~~~-~gip~~~q~L~~~--gk~L~d~~tL~~y~I~~~~ti~l  354 (426)
                      .|+|+|+++.|+.+  ++ +|+|++||++||++|+++ .|+|+++|||+|.  |+.|+|+.||++|||+++++||+
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            49999999998775  58 999999999999999994 8999999999987  99999999999999999999876

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.51  E-value=5.1e-14  Score=111.44  Aligned_cols=76  Identities=18%  Similarity=0.288  Sum_probs=69.3

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCC-----CcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPY-----HTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~-----~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      ...|+|+|++ .|+.+. ++++++     .||.+||++|++++|+|+++|+|+|+|+.|.|++.+|++|+|+++++|||+
T Consensus         5 ~~~~~v~Vk~-~~~~~~-i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~   82 (92)
T 1wxv_A            5 SSGLTVTVTH-SNEKHD-LHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI   82 (92)
T ss_dssp             CSSEEEEEEC-SSSEEE-EEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred             CCeEEEEEEE-CCEEEE-EEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence            3579999999 588998 999995     999999999999999999999999999999985668999999999999997


Q ss_pred             eec
Q 036691          134 FCP  136 (426)
Q Consensus       134 ~~~  136 (426)
                      .+.
T Consensus        83 ~~~   85 (92)
T 1wxv_A           83 GKK   85 (92)
T ss_dssp             SCC
T ss_pred             ecC
Confidence            654

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.51  E-value=3e-14  Score=110.96  Aligned_cols=65  Identities=15%  Similarity=0.216  Sum_probs=60.1

Q ss_pred             cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE-------cCeecCCCCccccCCCCCCCEEEEEee
Q 036691          293 WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF-------AGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       293 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-------~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      ...+.+...+++++||++||++|+.++|+|+++|||+|       .|+.|+|++||++|||++|++|||+-+
T Consensus        12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~   83 (86)
T 4b6w_A           12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL   83 (86)
T ss_dssp             CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence            45577889999999999999999999999999999996       689999999999999999999999853

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.51  E-value=4.5e-14  Score=110.04  Aligned_cols=70  Identities=20%  Similarity=0.295  Sum_probs=64.5

Q ss_pred             EEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           64 LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        64 i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      +++++.+|+++. +++++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+++..
T Consensus        14 ~~~~~~~g~~~~-l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           14 KLTVKFGGKSIP-LSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVE-TSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             EEEEEETTEEEE-EEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCT-TCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEECCEEEE-EEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCC-cCCHHHCCCCCCCEEEEEEe
Confidence            345556899999 99999999999999999999999999999999999999 99999999999999998653

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.51  E-value=3.2e-14  Score=115.84  Aligned_cols=77  Identities=22%  Similarity=0.310  Sum_probs=70.1

Q ss_pred             CCceeEEEEcCCC---ceeEEEEEc--------C-CCcHHHHHHHHHHHh--CCCCCc-eEEEeCCeEeecccccccccc
Q 036691           59 LSEMKLFVKIPTN---QTATVVEAM--------P-YHTVQNIKTMIQVKE--GIQSDQ-FTLVYDGKLLKEDTATMTSMN  123 (426)
Q Consensus        59 ~~~m~i~Vk~~~g---~~~~~~~v~--------~-~~tV~~lK~~I~~~~--gip~~~-q~L~~~g~~L~d~~~tL~~y~  123 (426)
                      ...|+|+||+.+|   +++. ++++        + ++||.+||++|++++  |+|+++ |+|+|+|+.|+| +.+|++|+
T Consensus        10 ~~~~~i~Vk~~~~~~~~~~~-l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D-~~tL~~y~   87 (107)
T 1x1m_A           10 LSDWHLAVKLADQPLAPKSI-LQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKD-DQTLDFYG   87 (107)
T ss_dssp             CCSCCEEEEETTCTTSCCEE-ECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCT-TCBHHHHT
T ss_pred             CCceEEEEEeCCCCCccEEE-EEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCC-CCcHHHcC
Confidence            3579999999988   8888 8954        4 499999999999999  999999 999999999999 99999999


Q ss_pred             cccCcEEEEEeecc
Q 036691          124 IKSESIIHLVFCPK  137 (426)
Q Consensus       124 I~~~s~i~l~~~~~  137 (426)
                      |+++++|||+.+..
T Consensus        88 i~~g~~i~lv~~~~  101 (107)
T 1x1m_A           88 IQPGSTVHVLRKSW  101 (107)
T ss_dssp             CCTTCEEEEEESSC
T ss_pred             CCCCCEEEEEeCCC
Confidence            99999999988754

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=5.7e-14  Score=113.56  Aligned_cols=78  Identities=21%  Similarity=0.296  Sum_probs=71.0

Q ss_pred             CceeEEEE-cCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           60 SEMKLFVK-IPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        60 ~~m~i~Vk-~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      ..+.|.|+ .+.|+.+. ++++++.||.+||+.++.+.++|+++|+|+|+|+.|.| +.||++|||++|.||||+.+-.+
T Consensus        14 ~~itvkv~l~~~~~k~t-v~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD-~eTL~~~gIk~g~TIhLvi~s~~   91 (118)
T 2daf_A           14 SLATVKVVLIPVGQEIV-IPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKN-NETLVQHGVKPQEIVQVEIFSTN   91 (118)
T ss_dssp             SCEEEEEEETTTCCEEE-EEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECS-SCCHHHHSCCSSCEEEEEEEESC
T ss_pred             ccEEEEEEEcCCCcEEE-EEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCC-cchHHHcCCCCCCEEEEEEecCC
Confidence            45677777 66788899 99999999999999999999999999999999999999 99999999999999999888654


Q ss_pred             e
Q 036691          139 I  139 (426)
Q Consensus       139 g  139 (426)
                      .
T Consensus        92 p   92 (118)
T 2daf_A           92 P   92 (118)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.50  E-value=2.2e-14  Score=114.23  Aligned_cols=73  Identities=14%  Similarity=0.218  Sum_probs=66.8

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      ..|+|+|+ +.|+++.+++++++||++||++|++++|+|+++|+|+|+|+.|+ +.+|++|+|+++++|||+...
T Consensus        16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~~   88 (95)
T 1v86_A           16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCSS
T ss_pred             ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEecc
Confidence            45889998 57899999999999999999999999999999999999999994 459999999999999997543

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.9e-14  Score=111.69  Aligned_cols=70  Identities=14%  Similarity=0.234  Sum_probs=64.6

Q ss_pred             ceeEEEEcCCCcee--EEE-EEcCCCcHHHHHHHHHHH-hCCCCCceEEEeC--CeEeecccccccccccccCcEEEE
Q 036691           61 EMKLFVKIPTNQTA--TVV-EAMPYHTVQNIKTMIQVK-EGIQSDQFTLVYD--GKLLKEDTATMTSMNIKSESIIHL  132 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~--~~~-~v~~~~tV~~lK~~I~~~-~gip~~~q~L~~~--g~~L~d~~~tL~~y~I~~~s~i~l  132 (426)
                      .|+|+|+++.|+.+  . + +|+|++||.+||++|+++ +|+||++|||+|.  |+.|+| +.+|++|+|+++++|++
T Consensus        10 ~M~I~Vk~~~g~~~~~~-l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D-~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCF-LDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKD-EDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CEEEEEEESSSCCCCEE-EEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCT-TCBTTTSSCCSEEEEEE
T ss_pred             EEEEEEECCCCCEEeeE-EeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCC-CCCHHHcCCCCCCEEEE
Confidence            59999999988775  4 7 999999999999999994 8999999999987  999999 99999999999999886

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.48  E-value=9.9e-14  Score=110.09  Aligned_cols=74  Identities=16%  Similarity=0.120  Sum_probs=65.1

Q ss_pred             cCCceeEEEEcCCC--ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeC--Ce---Ee-ecccccccccccccCcE
Q 036691           58 NLSEMKLFVKIPTN--QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYD--GK---LL-KEDTATMTSMNIKSESI  129 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g--~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~---~L-~d~~~tL~~y~I~~~s~  129 (426)
                      .++.+.|+|+...+  +.++ +++++++||++||++|++++|+|+++|||+|+  |+   .| +| +++|++|+|++|++
T Consensus        12 ~~~~v~l~It~s~~~~~~~~-~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D-~~tL~~Y~i~~gst   89 (95)
T 2kjr_A           12 KSDFIKVNVSNSHNDAVAFE-VKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNN-DAQLGYYANSDGLR   89 (95)
T ss_dssp             CCCEEEEEEEESSCSCEEEE-EEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCT-TSBHHHHCCSSSCE
T ss_pred             CCCeEEEEEEECCCCceEEE-EEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCC-CCCHhHCCcCCCCE
Confidence            35677888887665  4788 99999999999999999999999999999998  55   55 66 99999999999999


Q ss_pred             EEEE
Q 036691          130 IHLV  133 (426)
Q Consensus       130 i~l~  133 (426)
                      ||++
T Consensus        90 ihlv   93 (95)
T 2kjr_A           90 LHVV   93 (95)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.46  E-value=1.3e-13  Score=109.64  Aligned_cols=72  Identities=15%  Similarity=0.169  Sum_probs=63.1

Q ss_pred             CcEEEEEecCC--cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCe---e----cCCCCccccCCCCCCCEEEEE
Q 036691          285 PFQIFVKTWGG--KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGK---R----LFENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       285 ~m~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk---~----L~d~~tL~~y~I~~~~ti~l~  355 (426)
                      .+.++|...+.  ..+++++++++||++||++|+.++|+|+++|||+|.|+   .    ++|+++|++|+|++|++|||+
T Consensus        14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv   93 (97)
T 2kj6_A           14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII   93 (97)
T ss_dssp             CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred             eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence            45677776544  57999999999999999999999999999999999884   3    489999999999999999986


Q ss_pred             e
Q 036691          356 L  356 (426)
Q Consensus       356 ~  356 (426)
                      =
T Consensus        94 d   94 (97)
T 2kj6_A           94 D   94 (97)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.46  E-value=1.2e-13  Score=131.66  Aligned_cols=78  Identities=41%  Similarity=0.603  Sum_probs=72.7

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      .++.|+|+||+++|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|||++|++
T Consensus       230 ~~~~MqI~VKtl~Gk~~~-leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D-~~TLsdygI~~gstL~LvlRLr  307 (307)
T 3ai5_A          230 ITGSMQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLR  307 (307)
T ss_dssp             SCCCEEEEEECTTSCEEE-EEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TSBTGGGTCCTTCEEEEEC---
T ss_pred             CCCeEEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCC-CCCHHHcCCCCCCEEEEEEeCC
Confidence            468999999999999999 99999999999999999999999999999999999999 9999999999999999998864

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.45  E-value=9.7e-14  Score=136.17  Aligned_cols=79  Identities=25%  Similarity=0.344  Sum_probs=74.3

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHh---HhCCCCcceEEEEcCeecCCCCccccCCCCCCCEE-EEEeecC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFD---KLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTL-HMVLAPS  359 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~---~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti-~l~~~~~  359 (426)
                      ..|+|+||+.+|++++++|++++||.+||++|+.   ++|+|+++|+|+|+||.|+|++||++|||+++++| ||+.|.+
T Consensus         6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~   85 (368)
T 1oqy_A            6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK   85 (368)
T ss_dssp             CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence            4699999999999999999999999999999999   67899999999999999999999999999999999 8888888


Q ss_pred             CCc
Q 036691          360 SRI  362 (426)
Q Consensus       360 gg~  362 (426)
                      ++.
T Consensus        86 ~~~   88 (368)
T 1oqy_A           86 AGQ   88 (368)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            764

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.44  E-value=4.5e-13  Score=105.30  Aligned_cols=81  Identities=9%  Similarity=0.203  Sum_probs=76.9

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      +..|+|.|++.+|+.+.+.|.++++++.|++..+++.|+|+.++||+|+|+.|.++.|.++|++++|++|+++++.+||.
T Consensus         3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~   82 (91)
T 2io0_B            3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV   82 (91)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             c
Q 036691          363 I  363 (426)
Q Consensus       363 ~  363 (426)
                      .
T Consensus        83 ~   83 (91)
T 2io0_B           83 Y   83 (91)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.44  E-value=8.6e-14  Score=110.76  Aligned_cols=73  Identities=18%  Similarity=0.191  Sum_probs=66.8

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      ...|+|+||. .|+++. +++++++||.+||++|++++|+|+++|+|+|.|+.| | +.+|++|+|+++++|||+..
T Consensus        15 ~~~~~i~Vk~-~g~~~~-i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-d-d~tL~~~~i~~g~~i~lv~~   87 (95)
T 1v86_A           15 KELVDLKIIW-NKTKHD-VKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-E-DKTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             CCCEEEEEEE-TTEEEE-EEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-S-SSBHHHHCCCTTEEEEECCS
T ss_pred             CceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-C-cCcHHHCCCCCCCEEEEEec
Confidence            3578999995 789999 999999999999999999999999999999999999 5 44999999999999999654

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.42  E-value=2.1e-13  Score=106.23  Aligned_cols=64  Identities=14%  Similarity=0.099  Sum_probs=58.2

Q ss_pred             CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe-------CCeEeecccccccccccccCcEEEEEee
Q 036691           70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY-------DGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~-------~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      .++.+. ..+++++||.+||++|+.++|+||++|||+|       .|+.|+| +++|++|+|++|++|||+-+
T Consensus        13 ~~~~~E-~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d-~~tL~~Y~i~~g~~ihlvd~   83 (86)
T 4b6w_A           13 RMRVPE-KRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAN-DKQLGYYQCRDEFVIHVVDL   83 (86)
T ss_dssp             SCCEEE-EEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred             CCeEEE-EEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCC-CCCHHHCCCCCCCEEEEEeC
Confidence            455566 9999999999999999999999999999996       5888999 99999999999999999654

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.42  E-value=4e-13  Score=106.85  Aligned_cols=73  Identities=14%  Similarity=0.157  Sum_probs=62.5

Q ss_pred             CceeEEEEcCCC--ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe---E---e-ecccccccccccccCcEE
Q 036691           60 SEMKLFVKIPTN--QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK---L---L-KEDTATMTSMNIKSESII  130 (426)
Q Consensus        60 ~~m~i~Vk~~~g--~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~---~---L-~d~~~tL~~y~I~~~s~i  130 (426)
                      +.+.++|+....  +.++ +++++++||++||++|++++|+||++|||+|.|+   .   | +| +++|++|+|++|++|
T Consensus        13 ~~v~l~It~s~~~~~~~e-~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D-~~tL~~Y~I~~g~~I   90 (97)
T 2kj6_A           13 DSVHLHITHANLKSFSAD-ARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDD-SRPLGFFSPFDGFRL   90 (97)
T ss_dssp             CCEEEEEEETTSSCCCEE-EEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGG-GSCHHHHCCCSCCEE
T ss_pred             ceEEEEEEECCCCceEEE-EEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCC-cCCHHHCCCCCCCEE
Confidence            456667776443  4788 9999999999999999999999999999999883   3   4 66 999999999999999


Q ss_pred             EEEe
Q 036691          131 HLVF  134 (426)
Q Consensus       131 ~l~~  134 (426)
                      |++-
T Consensus        91 hlvd   94 (97)
T 2kj6_A           91 HIID   94 (97)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9853

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.41  E-value=6.6e-13  Score=105.10  Aligned_cols=80  Identities=14%  Similarity=0.194  Sum_probs=76.1

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      +..|+|+|++.+|+.+. +.|.+++++..|+++++++.|+|++++||+|.|+.|.+ +.|+++|+++++++|+++++.+|
T Consensus         5 ~~~i~ikVk~~~g~~i~-~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~-~~Tp~dl~medgD~Idv~~~~~G   82 (94)
T 2io1_B            5 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVFQQQTG   82 (94)
T ss_dssp             -CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCTTTTTCCTTCEEEEEECCEE
T ss_pred             CCeEEEEEECCCCCEEE-EEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEEeccC
Confidence            45799999999999999 99999999999999999999999999999999999999 99999999999999999999998


Q ss_pred             ee
Q 036691          139 IL  140 (426)
Q Consensus       139 g~  140 (426)
                      |.
T Consensus        83 G~   84 (94)
T 2io1_B           83 GV   84 (94)
T ss_dssp             SC
T ss_pred             CC
Confidence            84

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.40  E-value=1.1e-12  Score=103.62  Aligned_cols=78  Identities=9%  Similarity=0.204  Sum_probs=72.9

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ..|.|.|++.+|+.+.+.|.+++++..|+...+++.|+|++++||+|+|+.|.++.|..+|++++|++|+++++++||
T Consensus        16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG   93 (93)
T 2d07_B           16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG   93 (93)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence            468899999999999999999999999999999999999999999999999999999999999999999999999987

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.39  E-value=3.5e-13  Score=109.61  Aligned_cols=72  Identities=22%  Similarity=0.279  Sum_probs=66.8

Q ss_pred             CcEEEEEecCCcEEEEEEc-CCCcHHHHHHHHHhHhCCCCcceEEEEcCe-----------e----cCCCCccccCCCCC
Q 036691          285 PFQIFVKTWGGKTITLDVQ-PYNTVQDVKVKLFDKLQTPLHLQSIVFAGK-----------R----LFENHVLARYNIQK  348 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~gk-----------~----L~d~~tL~~y~I~~  348 (426)
                      .|.|+|++.+|+. .++|+ +++||.+||++|++++|+|+++|+|+|.|+           .    ++|++||++|||++
T Consensus         7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~   85 (107)
T 1wf9_A            7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH   85 (107)
T ss_dssp             CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred             eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence            4999999999866 79999 999999999999999999999999999988           4    58999999999999


Q ss_pred             CCEEEEEee
Q 036691          349 HSTLHMVLA  357 (426)
Q Consensus       349 ~~ti~l~~~  357 (426)
                      |++|||+..
T Consensus        86 G~~L~l~~~   94 (107)
T 1wf9_A           86 GSMVYLAYE   94 (107)
T ss_dssp             TCEEECCCS
T ss_pred             CCEEEEEeC
Confidence            999999765

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.39  E-value=3.2e-13  Score=132.50  Aligned_cols=79  Identities=22%  Similarity=0.331  Sum_probs=73.5

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHH---HhCCCCCceEEEeCCeEeecccccccccccccCcEE-EEEee
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQV---KEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESII-HLVFC  135 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~---~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i-~l~~~  135 (426)
                      ..|+|+||+.+|+++. ++|++++||.+||++|++   ++|+|+++|||+|+|+.|+| +++|++|+|+++++| +|+.|
T Consensus         6 ~~M~I~VKtl~Gk~~~-leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D-~~tL~dygI~~gstIv~lv~k   83 (368)
T 1oqy_A            6 SAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD-DVPIRDYRIDEKNFVVVMVTK   83 (368)
T ss_dssp             CCCCEEEEETTTEEEE-ECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECS-SSBTTTTCCCTTSCEEEEEEC
T ss_pred             ceEEEEEEeCCCCEEE-EEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCC-cCCHHHcCCCCCCEEEEEEec
Confidence            5799999999999999 999999999999999999   67899999999999999999 999999999999999 88888


Q ss_pred             cccee
Q 036691          136 PKEIL  140 (426)
Q Consensus       136 ~~~g~  140 (426)
                      .+++.
T Consensus        84 ~~~~~   88 (368)
T 1oqy_A           84 TKAGQ   88 (368)
T ss_dssp             CCSSS
T ss_pred             CCCCC
Confidence            77653

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.38  E-value=9.6e-13  Score=104.68  Aligned_cols=71  Identities=17%  Similarity=0.198  Sum_probs=62.6

Q ss_pred             cEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC---ee----cCCCCccccCCCCCCCEEEEEe
Q 036691          286 FQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG---KR----LFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       286 m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g---k~----L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      +.|+|+..... .+++++++++||++||++|+.++|+|+++|||+|+|   +.    ++|+++|++|||++|++||++-
T Consensus         8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d   86 (95)
T 1v6e_A            8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID   86 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred             EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence            56778775442 689999999999999999999999999999999987   43    5899999999999999999863

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.36  E-value=1.7e-12  Score=104.46  Aligned_cols=79  Identities=10%  Similarity=0.199  Sum_probs=76.5

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      ..|+|.|++.+|+.+.+.|.+++++..|+...+++.|+|+.++||+|+|+.|.++.|..+|++++|++|+++++++||.
T Consensus        23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~  101 (104)
T 1wz0_A           23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP  101 (104)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred             CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999999999985

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.34  E-value=3.3e-12  Score=102.81  Aligned_cols=77  Identities=6%  Similarity=0.179  Sum_probs=72.0

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ..|+|.|++ +|+.+.+.|.+++++..|+...+++.|+++.++||+|+|+.|.++.|..+|++++|++|+++++++||
T Consensus        30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG  106 (106)
T 2eke_C           30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG  106 (106)
T ss_dssp             SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence            458999999 99999999999999999999999999999999999999999999999999999999999999999987

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.34  E-value=7.8e-13  Score=107.57  Aligned_cols=73  Identities=25%  Similarity=0.250  Sum_probs=66.2

Q ss_pred             CceeEEEEcCCCceeEEEEEc-CCCcHHHHHHHHHHHhCCCCCceEEEeCCe-----------E----eecccccccccc
Q 036691           60 SEMKLFVKIPTNQTATVVEAM-PYHTVQNIKTMIQVKEGIQSDQFTLVYDGK-----------L----LKEDTATMTSMN  123 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~-----------~----L~d~~~tL~~y~  123 (426)
                      ..|.|+||+.+|+. . ++|+ +++||.+||++|++++|+|+++|+|+|.|+           .    ++| +.+|++|+
T Consensus         6 ~~M~irvrs~~G~~-~-v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d-~~tL~~~g   82 (107)
T 1wf9_A            6 SGTMLRVRSRDGLE-R-VSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADP-NLRISSLN   82 (107)
T ss_dssp             CCEEEEEECSSCEE-E-EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCT-TCBGGGTC
T ss_pred             CeEEEEEECCCCCE-E-EEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCC-CCCHHHCC
Confidence            35999999999976 6 8999 999999999999999999999999999988           4    466 99999999


Q ss_pred             cccCcEEEEEee
Q 036691          124 IKSESIIHLVFC  135 (426)
Q Consensus       124 I~~~s~i~l~~~  135 (426)
                      |++|++|||...
T Consensus        83 i~~G~~L~l~~~   94 (107)
T 1wf9_A           83 LAHGSMVYLAYE   94 (107)
T ss_dssp             CCTTCEEECCCS
T ss_pred             CCCCCEEEEEeC
Confidence            999999998654

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.32  E-value=4.9e-12  Score=105.31  Aligned_cols=72  Identities=14%  Similarity=0.097  Sum_probs=63.7

Q ss_pred             CcEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC---e---e-cCCCCccccCCCCCCCEEEEEe
Q 036691          285 PFQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG---K---R-LFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       285 ~m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g---k---~-L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      .+.|+|+...+. .+++++++++||++||++|+.++|+|+++|||+|.|   +   . ++|+++|++|||++|++||++.
T Consensus         6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd   85 (122)
T 1t0y_A            6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD   85 (122)
T ss_dssp             EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred             EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence            467888875543 689999999999999999999999999999999987   4   3 4899999999999999999985

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.32  E-value=7.1e-12  Score=94.23  Aligned_cols=70  Identities=10%  Similarity=0.236  Sum_probs=68.3

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~  355 (426)
                      |+|.|++.+|+.+.+.+.++++++.|++..+++.|+|+.+++|+|+|+.|.++.|.++|++++|++|+++
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            7899999999999999999999999999999999999999999999999999999999999999999986

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.32  E-value=7.9e-12  Score=98.16  Aligned_cols=81  Identities=14%  Similarity=0.184  Sum_probs=76.3

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      +..|+|.|++.+|+.+. +.|.+++++..|+...+++.|+|+++++|+|.|+.|.+ +.|.++|++.+|++|+++++.+|
T Consensus         3 ~~~i~ikVk~~~g~~v~-~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~-~~Tp~dl~medgD~Idv~~~q~g   80 (91)
T 2io0_B            3 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVFQQQTG   80 (91)
T ss_dssp             -CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCT-TCCTTTTTCCTTEEEEEEECCCC
T ss_pred             CCeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEEeccC
Confidence            45789999999999999 99999999999999999999999999999999999999 99999999999999999999988


Q ss_pred             eee
Q 036691          139 ILS  141 (426)
Q Consensus       139 g~~  141 (426)
                      |..
T Consensus        81 g~~   83 (91)
T 2io0_B           81 GVY   83 (91)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            753

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.31  E-value=3.4e-12  Score=101.49  Aligned_cols=72  Identities=19%  Similarity=0.261  Sum_probs=61.7

Q ss_pred             ceeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC---eE---e-ecccccccccccccCcEEEE
Q 036691           61 EMKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG---KL---L-KEDTATMTSMNIKSESIIHL  132 (426)
Q Consensus        61 ~m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~~---L-~d~~~tL~~y~I~~~s~i~l  132 (426)
                      .+.|+|+..... .+. +++++++||.+||++|++++|+|+++|||+|.|   +.   | +| +++|++|+|++|++||+
T Consensus         7 ~v~l~I~~~~~~~~~~-~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D-~~tL~~y~i~~g~~l~v   84 (95)
T 1v6e_A            7 GVMVFISSSLNSFRSE-KRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE-DALLGSYPVDDGCRIHV   84 (95)
T ss_dssp             CEEEEEEETTSSSCEE-EEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCS-SSBTTSSSCCTTCEEEE
T ss_pred             EEEEEEEECCCCeeEE-EEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCC-cCCHhHCCCCCCCEEEE
Confidence            366777765442 677 999999999999999999999999999999987   43   4 66 99999999999999998


Q ss_pred             Ee
Q 036691          133 VF  134 (426)
Q Consensus       133 ~~  134 (426)
                      +-
T Consensus        85 ~d   86 (95)
T 1v6e_A           85 ID   86 (95)
T ss_dssp             BC
T ss_pred             EE
Confidence            53

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.31  E-value=3e-12  Score=103.83  Aligned_cols=80  Identities=8%  Similarity=0.158  Sum_probs=76.3

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      +..|.|.|++.+|+.+.+.|.+++++..|+...+++.|+|++++||+|+|++|.++.|..+|++++|++|++++..+||-
T Consensus        24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~  103 (110)
T 2k8h_A           24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL  103 (110)
T ss_dssp             CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999984

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.28  E-value=4.2e-12  Score=99.04  Aligned_cols=71  Identities=15%  Similarity=0.147  Sum_probs=63.6

Q ss_pred             cEEEEEecCCcEEEEE-EcCCCcHHHHHHHHHhHhCCCCcceEEEEcC--eecC---CCCccccCCCCCCCEEEEEee
Q 036691          286 FQIFVKTWGGKTITLD-VQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG--KRLF---ENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g--k~L~---d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      |+|.|++.+|+. .+. +++++||++||+.|++++|+|+++|+|+|++  +.|+   |+.+|++|||.+|++||+.-.
T Consensus         1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            789999999965 477 9999999999999999999999999999974  8884   688999999999999988643

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.27  E-value=1.1e-11  Score=103.04  Aligned_cols=73  Identities=11%  Similarity=0.153  Sum_probs=62.7

Q ss_pred             CceeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC---e---Ee-ecccccccccccccCcEEE
Q 036691           60 SEMKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG---K---LL-KEDTATMTSMNIKSESIIH  131 (426)
Q Consensus        60 ~~m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~---~L-~d~~~tL~~y~I~~~s~i~  131 (426)
                      +.+.|+|+...+. .+. +++++++||.+||++|+.++|+|+++|||+|.|   +   .| +| +++|++|+|++|++||
T Consensus         5 ~~v~l~V~~~~~~~~~e-~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D-~~tL~~y~i~~g~~ih   82 (122)
T 1t0y_A            5 EVYDLEITTNATDFPME-KKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDG-AKSLKDLGVRDGYRIH   82 (122)
T ss_dssp             CEEEEEEEESSCCSCEE-EEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCC-SSBTTTTTCCSSEEEE
T ss_pred             CEEEEEEEECCCCccEE-EEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCC-cCCHHHCCCCCCCEEE
Confidence            3467778775443 677 999999999999999999999999999999987   4   34 56 9999999999999999


Q ss_pred             EEe
Q 036691          132 LVF  134 (426)
Q Consensus       132 l~~  134 (426)
                      ++.
T Consensus        83 vvd   85 (122)
T 1t0y_A           83 AVD   85 (122)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            965

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.27  E-value=1.9e-11  Score=96.52  Aligned_cols=79  Identities=14%  Similarity=0.189  Sum_probs=73.1

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      +..|.|.|++.+|+.+. +.|.+++++..|+...+++.|+|+++++|+|.|+.|.+ +.|.++|++.+|++|+++++.+|
T Consensus        15 ~~~i~ikV~~~~g~~i~-~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~-~~Tp~dl~medgD~Idv~~~q~G   92 (93)
T 2d07_B           15 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVFQQQTG   92 (93)
T ss_dssp             CCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCTTTTTCCTTEEEEEEECC--
T ss_pred             CCeEEEEEECCCCCEEE-EEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCC-CCCHHHcCCCCCCEEEEEeeccC
Confidence            46789999999999998 99999999999999999999999999999999999999 99999999999999999999887


Q ss_pred             e
Q 036691          139 I  139 (426)
Q Consensus       139 g  139 (426)
                      |
T Consensus        93 G   93 (93)
T 2d07_B           93 G   93 (93)
T ss_dssp             -
T ss_pred             C
Confidence            6

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.26  E-value=2.6e-11  Score=92.78  Aligned_cols=73  Identities=11%  Similarity=0.187  Sum_probs=69.5

Q ss_pred             CCCcEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691          283 PSPFQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       283 ~~~m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~  355 (426)
                      +..|+|.|++.+|+ .+.+.|.+++++..|+...+++.|+|+++++|+|+|+.|.++.|..+|++++|++|+++
T Consensus         5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            35689999999996 89999999999999999999999999999999999999999999999999999999985

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.26  E-value=6.4e-12  Score=121.51  Aligned_cols=75  Identities=24%  Similarity=0.414  Sum_probs=67.7

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE---EcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV---FAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      ..|.|.|+ ++|+++++++++++||++||++|++++|||+++|+|+   |+|+.|+|+.+|++|||++|++|+|+....
T Consensus         4 ~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~   81 (320)
T 3shq_A            4 KEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE   81 (320)
T ss_dssp             CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred             ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence            35789999 4899999999999999999999999999999999999   899999999999999999999999986543

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.21  E-value=3e-11  Score=97.18  Aligned_cols=80  Identities=14%  Similarity=0.181  Sum_probs=75.9

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      +..|.|.|++.+|+.+. +.|.+++++..|+...+++.|+|++++||+|.|+.|.+ +.|.++|++.++++|+++++.+|
T Consensus        22 ~~~I~IkVk~~~g~~i~-~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~-~~Tp~dl~medgD~Idv~~~q~G   99 (104)
T 1wz0_A           22 NDHINLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVFQQQTS   99 (104)
T ss_dssp             SCCEEEEEECSSSCEEE-EEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCT-TSCTTTTTCCTTEEEEECCCCCC
T ss_pred             CCeEEEEEECCCCCEEE-EEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEEeccC
Confidence            46789999999999999 99999999999999999999999999999999999999 99999999999999999999888


Q ss_pred             ee
Q 036691          139 IL  140 (426)
Q Consensus       139 g~  140 (426)
                      |.
T Consensus       100 G~  101 (104)
T 1wz0_A          100 GP  101 (104)
T ss_dssp             CS
T ss_pred             CC
Confidence            74

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.20  E-value=5e-11  Score=95.93  Aligned_cols=79  Identities=13%  Similarity=0.169  Sum_probs=72.7

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      .+..|+|.|++ +|+.+. +.|.+++++..|+...+++.|++++++||+|.|+.|.+ +.|.++|++.+|++|+++++.+
T Consensus        28 ~~~~I~IkV~~-~g~~i~-fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~-~~Tp~dl~medgD~Idv~~~q~  104 (106)
T 2eke_C           28 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHREQI  104 (106)
T ss_dssp             CCSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCTTTTTCCTTEEEEEEECC-
T ss_pred             CCCeEEEEEec-CCcEEE-EEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCC-CCCHHHcCCCCCCEEEEEeecc
Confidence            34679999999 999999 99999999999999999999999999999999999999 9999999999999999999988


Q ss_pred             ce
Q 036691          138 EI  139 (426)
Q Consensus       138 ~g  139 (426)
                      ||
T Consensus       105 GG  106 (106)
T 2eke_C          105 GG  106 (106)
T ss_dssp             --
T ss_pred             cC
Confidence            76

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.20  E-value=6.9e-11  Score=88.78  Aligned_cols=70  Identities=16%  Similarity=0.272  Sum_probs=67.6

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      |+|.|++.+|+.+. +.|.+++++..|+...+++.|+|+++++++|.|+.|.+ +.|.++|++.+|++|++.
T Consensus         2 i~lkV~~~~g~~v~-~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~-~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEE-EEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCT-TCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCC-CCCHHHcCCCCCCEEEEE
Confidence            78999999999999 99999999999999999999999999999999999999 999999999999999984

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.19  E-value=1.4e-11  Score=95.99  Aligned_cols=72  Identities=11%  Similarity=0.154  Sum_probs=63.1

Q ss_pred             eeEEEEcCCCceeEEEE-EcCCCcHHHHHHHHHHHhCCCCCceEEEeC--CeEee--cccccccccccccCcEEEEEee
Q 036691           62 MKLFVKIPTNQTATVVE-AMPYHTVQNIKTMIQVKEGIQSDQFTLVYD--GKLLK--EDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~~L~--d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      |+|+||+.+|+. . +. +++++||.+||++|++++|+|+++|+|+|+  ++.|+  |++.+|++|||++|++|++...
T Consensus         1 m~i~vr~~~G~~-~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGTH-L-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEEE-E-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCCE-E-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            789999999965 4 67 999999999999999999999999999987  47774  2389999999999999998543

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.19  E-value=3.5e-11  Score=97.57  Aligned_cols=82  Identities=13%  Similarity=0.205  Sum_probs=76.5

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      .+..|.|.|++.+|+.+. +.|.+++++..|+...+++.|+|++++||+|.|+.|.+ +.|.++|++.++++|++++..+
T Consensus        23 ~~~~I~IkVk~~~g~~i~-fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~-~~Tp~dl~mEDgD~Idv~~~q~  100 (110)
T 2k8h_A           23 ETALVAVKVVNADGAEMF-FRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDE-TKTPEELGMEDDDVIDAMVEQT  100 (110)
T ss_dssp             CCCCEEEEEEETTSCCEE-EEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCS-SSHHHHHHCSSEEEEEEECCCC
T ss_pred             CCCeEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEEccc
Confidence            346799999999999999 99999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             ceee
Q 036691          138 EILS  141 (426)
Q Consensus       138 ~g~~  141 (426)
                      ||..
T Consensus       101 Gg~~  104 (110)
T 2k8h_A          101 GGLE  104 (110)
T ss_dssp             CC--
T ss_pred             Cccc
Confidence            8864

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.15  E-value=3.2e-11  Score=116.59  Aligned_cols=75  Identities=19%  Similarity=0.317  Sum_probs=68.0

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE---eCCeEeecccccccccccccCcEEEEEeec
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV---YDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      ..|.|.||. +|+++. +++++++||.+||++|++++|+||++|+|+   |+|+.|.| +.+|++|+|++|++|+|+...
T Consensus         4 ~~i~i~Vk~-~g~~~~-v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D-~~~L~~~~ik~g~~l~L~gs~   80 (320)
T 3shq_A            4 KEVVVIVKW-SGKEYP-VDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAAD-NVKISALELKPNFKLMMVGST   80 (320)
T ss_dssp             CEEEEEEEE-TTEEEE-EEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCT-TSBTTSSCCC--CEEEEECCC
T ss_pred             ceEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCc-cccHHHcCCCCCCEEEEEccc
Confidence            568899997 899999 999999999999999999999999999999   89999999 999999999999999997654


Q ss_pred             c
Q 036691          137 K  137 (426)
Q Consensus       137 ~  137 (426)
                      .
T Consensus        81 ~   81 (320)
T 3shq_A           81 E   81 (320)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.13  E-value=2.3e-10  Score=87.47  Aligned_cols=73  Identities=14%  Similarity=0.279  Sum_probs=69.2

Q ss_pred             CCceeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           59 LSEMKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      +..|.|.|++.+|+ .+. +.|.+++++..|+...+++.|+++++++|+|.|+.|.+ +.|.++|++.+|++|++.
T Consensus         5 ~~~i~ikV~~~~g~~~i~-~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~-~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            5 SQELRLRVQGKEKHQMLE-ISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSG-KELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCCEEEEEECSSTTCEEE-EEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCS-CCCHHHHTCCTTCEEEEE
T ss_pred             CCEEEEEEEeCCCCEEEE-EEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEe
Confidence            46799999999996 888 99999999999999999999999999999999999999 999999999999999973

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.95  E-value=2.6e-09  Score=85.06  Aligned_cols=72  Identities=18%  Similarity=0.163  Sum_probs=62.2

Q ss_pred             CcEEEEEe---cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC-------eec-CCCCccccCCCCCCCEEE
Q 036691          285 PFQIFVKT---WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG-------KRL-FENHVLARYNIQKHSTLH  353 (426)
Q Consensus       285 ~m~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g-------k~L-~d~~tL~~y~I~~~~ti~  353 (426)
                      .+.|.|+.   .+|+.+...+.++.||++||.+|+..+|+|+..|+|+|.+       ..| +|.++|++|+|.+|++||
T Consensus         9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~   88 (97)
T 1wjn_A            9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL   88 (97)
T ss_dssp             EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred             cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence            35666764   4778999999999999999999999999999999999873       225 678899999999999999


Q ss_pred             EEe
Q 036691          354 MVL  356 (426)
Q Consensus       354 l~~  356 (426)
                      +.-
T Consensus        89 V~d   91 (97)
T 1wjn_A           89 VRW   91 (97)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            975

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.95  E-value=2e-09  Score=85.64  Aligned_cols=74  Identities=16%  Similarity=0.234  Sum_probs=62.3

Q ss_pred             ceeEEEEc---CCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCC-------eEeecccccccccccccCcEE
Q 036691           61 EMKLFVKI---PTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDG-------KLLKEDTATMTSMNIKSESII  130 (426)
Q Consensus        61 ~m~i~Vk~---~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g-------~~L~d~~~tL~~y~I~~~s~i  130 (426)
                      .+.|+|+.   .+|+.+. ..++++.||.+||.+|+...|+|+..|+|.|.+       ..|+||..+|++|++.+|++|
T Consensus         9 ~v~l~I~~~~~~~~~~~e-~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I   87 (97)
T 1wjn_A            9 LLTLKIKCSNQPERQILE-KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL   87 (97)
T ss_dssp             EEEEEEEESSCSSSCCEE-EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred             cEEEEEEecCCCCCcEEE-EECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence            34566654   3677888 999999999999999999999999999999873       236666999999999999999


Q ss_pred             EEEee
Q 036691          131 HLVFC  135 (426)
Q Consensus       131 ~l~~~  135 (426)
                      |+...
T Consensus        88 ~V~d~   92 (97)
T 1wjn_A           88 LVRWS   92 (97)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            98653

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.95  E-value=9.6e-09  Score=91.72  Aligned_cols=79  Identities=6%  Similarity=0.137  Sum_probs=74.0

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      ..++|.|+. +|+.+.+.|.+++++..|+...+++.|+|+.++||+|+|+.|.++.|..++++++|++|++++.+.||..
T Consensus        28 ~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~k  106 (200)
T 3pge_A           28 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGG  106 (200)
T ss_dssp             CCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC-
T ss_pred             CeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCcC
Confidence            357888975 8999999999999999999999999999999999999999999999999999999999999999998854

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.92  E-value=7e-09  Score=84.20  Aligned_cols=77  Identities=13%  Similarity=0.267  Sum_probs=72.5

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      ..++|.|++.+|..+.+.|.+++++..|+...+++.|+++..+||+|+|+.|.++.|..++++++|++|+++....|
T Consensus        39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G  115 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG  115 (115)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred             CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999987543

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=98.83  E-value=1.8e-06  Score=89.00  Aligned_cols=322  Identities=12%  Similarity=0.128  Sum_probs=212.0

Q ss_pred             ccCCCCCHHHHHHHHHHHhCCCcccceEEec-----C-ee--cc-----CCC-cccCCCCCCCeEEEEE--ec-------
Q 036691            2 KVKKSEPIKNLKAMIHVKEGISEDICDLFFA-----G-DR--LE-----AGR-LVDYGIRNNSTLHFLH--QN-------   58 (426)
Q Consensus         2 ~v~~~dtv~~~K~~i~~~~gi~~~~q~L~~~-----g-~~--L~-----d~~-l~~y~i~~~~~l~l~~--~~-------   58 (426)
                      +|....|+.++|.++.+..|+|+++|||-..     + .+  +.     ... +.++. .++..+.|.+  ..       
T Consensus        41 rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~-~~~~~~~lflE~~~~~~~~~~  119 (530)
T 2ylm_A           41 KVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS-DNENPWTIFLETVDPELAASG  119 (530)
T ss_dssp             EEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHH-TSCSSEEEEEEECCHHHHTTT
T ss_pred             EEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHh-ccCCceEEEEEecccccCCcc
Confidence            5778999999999999999999999999642     1 12  11     111 22211 1233344433  11       


Q ss_pred             --------CCceeEEEEcCC--CceeE---EEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeC------CeEeecccccc
Q 036691           59 --------LSEMKLFVKIPT--NQTAT---VVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYD------GKLLKEDTATM  119 (426)
Q Consensus        59 --------~~~m~i~Vk~~~--g~~~~---~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~------g~~L~d~~~tL  119 (426)
                              ...+-||+|..+  .+++.   .+.|+.+++|.++-..|.++.|+|++.-..+|.      ...|+++..|+
T Consensus       120 ~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~  199 (530)
T 2ylm_A          120 ATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSL  199 (530)
T ss_dssp             CCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBH
T ss_pred             ccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccH
Confidence                    125788998753  33322   147789999999999999999999998777775      33566448899


Q ss_pred             ccc--ccccCcEEEEEeeccc------------------eeeeEeec---ccCcEEEEeccCCCcHHHHHHHHhhhhCCC
Q 036691          120 TSM--NIKSESIIHLVFCPKE------------------ILSIFVKA---ATGEIVNLEVKHSFAIRDVKAIVGSVVGVS  176 (426)
Q Consensus       120 ~~y--~I~~~s~i~l~~~~~~------------------g~~i~Vk~---~~gk~~~i~v~~~~tV~~lK~~I~~~~gip  176 (426)
                      .+.  .+.+|+.|-......+                  -+.+.++.   .+...+.+++....|-.++-+.|.++.|++
T Consensus       200 ~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~d  279 (530)
T 2ylm_A          200 DKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTD  279 (530)
T ss_dssp             HHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSC
T ss_pred             HHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCC
Confidence            999  9999999987655331                  12232222   357779999999999999999999999999


Q ss_pred             CCcEEEEEC----Ce---e--ccCCCCcccccCCC----cceeeec-----------cCcceeEEEcCCCc--EEEEeec
Q 036691          177 AADHIMIYE----GK---K--LEDSKTLAFYDMKD----ECLLEMF-----------PSSIQIFVRTPIEE--IVRLEVE  230 (426)
Q Consensus       177 ~~~q~L~~~----g~---~--L~d~~tL~~y~I~~----~s~i~l~-----------~~~~~i~V~~~~g~--~~~l~v~  230 (426)
                      |+.-+|.-.    |.   .  .....+|.+.=-..    ...++--           ...+.|+....+.+  .+.+-++
T Consensus       280 P~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vp  359 (530)
T 2ylm_A          280 PMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITLYPD  359 (530)
T ss_dssp             GGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEECCB
T ss_pred             chhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEEEcC
Confidence            999877522    22   1  22233443322111    1112111           22355554444333  3667778


Q ss_pred             ccccHHHHHHHHHHHhCCCC---CceeEE--ecC---eecCCCccccccCCCCCccccc--CC---------CCcEEEEE
Q 036691          231 VLIVVRDVKEIVANIIDLSL---GNQDLF--YAG---TKLEACKTLASYGIKNNYVLDV--LP---------SPFQIFVK  291 (426)
Q Consensus       231 ~~~tV~~lK~~I~~~~~ip~---~~q~L~--~~g---~~L~d~~tL~~y~I~~~~~l~l--~~---------~~m~i~v~  291 (426)
                      .+.||++|-+.+..+.+++.   .+.++.  +++   +.+.++.++...+=....++++  +|         ..+.|.|-
T Consensus       360 K~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li~V~  439 (530)
T 2ylm_A          360 KHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVA  439 (530)
T ss_dssp             TTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEEEEE
T ss_pred             CCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEEEEE
Confidence            89999999999999999873   455653  555   4467777776543222334444  11         12334442


Q ss_pred             ec-------CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc
Q 036691          292 TW-------GGKTITLDVQPYNTVQDVKVKLFDKLQTPLH  324 (426)
Q Consensus       292 ~~-------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~  324 (426)
                      -.       -|..|.+.|.+++|..++|++|++++|++..
T Consensus       440 hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k  479 (530)
T 2ylm_A          440 HFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEK  479 (530)
T ss_dssp             EESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred             EeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence            22       3678889999999999999999999999966

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.79  E-value=1.2e-08  Score=89.05  Aligned_cols=79  Identities=5%  Similarity=0.164  Sum_probs=74.6

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      ..++|.|+. +|..+.+.|.+++++..|+...+++.|+|+.+++|+|+|+.|.++.|..++++++||+|++++...||..
T Consensus        56 e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~~  134 (207)
T 3tix_A           56 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGLP  134 (207)
T ss_dssp             CEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTGG
T ss_pred             CcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCCc
Confidence            347788875 8999999999999999999999999999999999999999999999999999999999999999999965

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.67  E-value=1.2e-07  Score=76.87  Aligned_cols=75  Identities=12%  Similarity=0.235  Sum_probs=70.7

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      ..+.|.|+..+|+.+. +.|.+++++..|+...+++.|++++++|++|.|+.|.+ +.|..++++.+|++|++.+..
T Consensus        39 ~~I~LKV~~qdg~ev~-fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~-~~TP~dL~MEDgD~IdV~~~Q  113 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD-NHTPKELGMEEEDVIEVYQEQ  113 (115)
T ss_dssp             CEEEEEEECTTSCEEE-EEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCT-TCCTTTTTCCTTCEEEEEECC
T ss_pred             CeEEEEEEcCCCCEEE-EEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCC-CCCHHHcCCCCCCEEEEEeec
Confidence            5788999998999998 99999999999999999999999999999999999999 999999999999999987653

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.61  E-value=1.3e-07  Score=84.34  Aligned_cols=79  Identities=13%  Similarity=0.169  Sum_probs=73.7

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      +...++|.|+. +|+.+. +.|.+++++..|+...+++.|+|++++|++|.|+.|.+ +.|..++++.+|++|++++...
T Consensus        26 ~~~~I~LkV~~-~g~~v~-fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~-~~TP~dL~MEdgD~Idv~~~q~  102 (200)
T 3pge_A           26 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHREQI  102 (200)
T ss_dssp             CCCCEEEEEEC-SSCEEE-EEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCT-TCCTTTTTCCTTEEEEEEECCS
T ss_pred             CCCeEEEEEec-CCCEEE-EEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEeccC
Confidence            35678889985 899998 99999999999999999999999999999999999999 9999999999999999999987


Q ss_pred             ce
Q 036691          138 EI  139 (426)
Q Consensus       138 ~g  139 (426)
                      ||
T Consensus       103 gg  104 (200)
T 3pge_A          103 GG  104 (200)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.57  E-value=7.6e-09  Score=91.56  Aligned_cols=79  Identities=6%  Similarity=0.168  Sum_probs=2.0

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      ..|+|.| +.+|+.+.+.|.+++++..|++..+++.|+|+.++|++|+|+.+.++.|..++++++||+|+++....||..
T Consensus        20 e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~   98 (227)
T 3v7o_A           20 THINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLT   98 (227)
T ss_dssp             -----------------------------------------------------------------------------CCC
T ss_pred             CeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCch
Confidence            3578889 779999999999999999999999999999999999999999999999999999999999999999999955

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.52  E-value=1.8e-07  Score=81.65  Aligned_cols=80  Identities=15%  Similarity=0.192  Sum_probs=74.2

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      +...|.|.|+. +|..+. +.|.+++++..|+...+++.|+++++++++|.|+.|.+ +.|..++++.+|++|++++...
T Consensus        54 p~e~InLKVk~-dG~eV~-FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~-ddTPeDLdMEDGDtIDV~leQ~  130 (207)
T 3tix_A           54 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQA-DQTPEDLDMEDNDIIEAHREQI  130 (207)
T ss_dssp             -CCEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCS-SCCTTTTTCCTTEEEEECCCCC
T ss_pred             CCCcEEEEEec-CCCEEE-EEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCC-CCCHHHcCCCCCCEEEEEEecc
Confidence            34678888975 899998 99999999999999999999999999999999999999 9999999999999999999998


Q ss_pred             cee
Q 036691          138 EIL  140 (426)
Q Consensus       138 ~g~  140 (426)
                      ||.
T Consensus       131 GG~  133 (207)
T 3tix_A          131 GGL  133 (207)
T ss_dssp             TTG
T ss_pred             CCC
Confidence            874

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.40  E-value=2.7e-06  Score=62.85  Aligned_cols=71  Identities=15%  Similarity=0.302  Sum_probs=65.4

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc-ceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLH-LQSIVFAGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      +.+..+.....-+.+.+.++.+|.+|.+.-+.+.|||++ ..+|.|.|..|+++.++.+|++++|+.|.+++
T Consensus        10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            456677776677889999999999999999999999999 99999999999999999999999999998875

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=98.39  E-value=0.00017  Score=74.21  Aligned_cols=319  Identities=14%  Similarity=0.110  Sum_probs=202.7

Q ss_pred             eEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe----CCe--E--eecc----ccccccccc-ccCcEEEEEeecc---
Q 036691           74 ATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY----DGK--L--LKED----TATMTSMNI-KSESIIHLVFCPK---  137 (426)
Q Consensus        74 ~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~----~g~--~--L~d~----~~tL~~y~I-~~~s~i~l~~~~~---  137 (426)
                      .. +.|..++|+.+||++|++..|+|+++|||-.    .++  .  +.++    +.++.++.- .+.-++.+-....   
T Consensus        38 ~~-~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~~~~~~~lflE~~~~~~~  116 (530)
T 2ylm_A           38 TV-FKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSDNENPWTIFLETVDPELA  116 (530)
T ss_dssp             EE-EEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHTSCSSEEEEEEECCHHHH
T ss_pred             ce-EEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhccCCceEEEEEecccccC
Confidence            35 8899999999999999999999999999842    111  1  1110    123333321 1223344322110   


Q ss_pred             ------------ceeeeEeecc--cCcEEE----EeccCCCcHHHHHHHHhhhhCCCCCcEEEEEC------Ceecc-CC
Q 036691          138 ------------EILSIFVKAA--TGEIVN----LEVKHSFAIRDVKAIVGSVVGVSAADHIMIYE------GKKLE-DS  192 (426)
Q Consensus       138 ------------~g~~i~Vk~~--~gk~~~----i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~------g~~L~-d~  192 (426)
                                  .-+-+|+|-+  ..+++.    +.+...++|+++-..|.+..|+|++.-...|.      ...|+ ..
T Consensus       117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~  196 (530)
T 2ylm_A          117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD  196 (530)
T ss_dssp             TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred             CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence                        0245566644  345554    47888999999999999999999998777773      23467 68


Q ss_pred             CCcccc--cCCCcceeeec---c-C-----------------cceeEEEc---CCCcEEEEeecccccHHHHHHHHHHHh
Q 036691          193 KTLAFY--DMKDECLLEMF---P-S-----------------SIQIFVRT---PIEEIVRLEVEVLIVVRDVKEIVANII  246 (426)
Q Consensus       193 ~tL~~y--~I~~~s~i~l~---~-~-----------------~~~i~V~~---~~g~~~~l~v~~~~tV~~lK~~I~~~~  246 (426)
                      .|+...  .+.+|+.|..=   + .                 .+.|.+..   .+...+.++++...|-.++.++|.++.
T Consensus       197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l  276 (530)
T 2ylm_A          197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL  276 (530)
T ss_dssp             SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred             ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence            899999  99999998553   1 0                 12233332   346669999999999999999999999


Q ss_pred             CCCCCceeEEec----C---eec--CCCccccccCCC---C-Cccccc--C---------CCCcEEEEEecCCc--EEEE
Q 036691          247 DLSLGNQDLFYA----G---TKL--EACKTLASYGIK---N-NYVLDV--L---------PSPFQIFVKTWGGK--TITL  300 (426)
Q Consensus       247 ~ip~~~q~L~~~----g---~~L--~d~~tL~~y~I~---~-~~~l~l--~---------~~~m~i~v~~~~g~--~~~l  300 (426)
                      ++.|..-++.-.    +   ..+  ..+.+|.+.=-.   + ...++.  +         ...|.|+......+  .+.+
T Consensus       277 ~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l  356 (530)
T 2ylm_A          277 NTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITL  356 (530)
T ss_dssp             TSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEE
T ss_pred             CCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEE
Confidence            999988776522    1   122  223344432111   1 122222  1         23466655544332  5667


Q ss_pred             EEcCCCcHHHHHHHHHhHhCCC---CcceEE--EEcCe---ecCCCCccccCCCCCCCEEEEE-----------------
Q 036691          301 DVQPYNTVQDVKVKLFDKLQTP---LHLQSI--VFAGK---RLFENHVLARYNIQKHSTLHMV-----------------  355 (426)
Q Consensus       301 ~v~~~~tV~~lK~~i~~~~gip---~~~q~L--~~~gk---~L~d~~tL~~y~I~~~~ti~l~-----------------  355 (426)
                      -+..+.||.+|-+.++.+.+++   ....|+  ++++|   .+.++.+++..+=....++++-                 
T Consensus       357 ~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li  436 (530)
T 2ylm_A          357 YPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLV  436 (530)
T ss_dssp             CCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEE
T ss_pred             EcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEE
Confidence            7778999999999999999997   456676  57775   4566777765432113333331                 


Q ss_pred             --eecCCCcccCCceeeccccCCCCCHHHHHHHHHHhcCc
Q 036691          356 --LAPSSRIIELPLIFIDPSISLSISISEVKEMAKVKFQA  393 (426)
Q Consensus       356 --~~~~gg~~~~~~~~~~~~~~~~~~v~~~k~~i~~~~~~  393 (426)
                        ..........-|...-..+.+..+..++|+.|+.++..
T Consensus       437 ~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv  476 (530)
T 2ylm_A          437 TVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDI  476 (530)
T ss_dssp             EEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCC
T ss_pred             EEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCC
Confidence              11111111122444556788888999999999999544

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.35  E-value=2.1e-07  Score=70.97  Aligned_cols=71  Identities=13%  Similarity=0.083  Sum_probs=61.3

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCee-----cCCCCccccCCCCCCCEEEEE
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKR-----LFENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~-----L~d~~tL~~y~I~~~~ti~l~  355 (426)
                      .+|.|.|++.+| ++.+++++++|+.+|+++|++++++|++.|.+.++...     +.++.+|+++||+.|++|++.
T Consensus         3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            358899999876 67789999999999999999999999999888776655     347889999999999999874

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.26  E-value=1.1e-07  Score=84.15  Aligned_cols=83  Identities=13%  Similarity=0.205  Sum_probs=2.4

Q ss_pred             ecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           57 QNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        57 ~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      .+...|.|.| ..+|+.+. +.|.++++...|+...+++.|++++++|++|.|+.+.+ +.|.+++++.+|++|+++...
T Consensus        17 ~p~e~InLKV-~qdGseV~-FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~d-ddTPadL~MEDGDtIDV~leQ   93 (227)
T 3v7o_A           17 KPETHINLKV-SDGSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHREQ   93 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCeEEEEE-eCCCCEEE-EEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCC-CCCHHHcCCCCCCEEEEEecc
Confidence            3457888999 77899998 99999999999999999999999999999999999999 999999999999999999999


Q ss_pred             cceeee
Q 036691          137 KEILSI  142 (426)
Q Consensus       137 ~~g~~i  142 (426)
                      .||..+
T Consensus        94 ~GG~~~   99 (227)
T 3v7o_A           94 IGGLTL   99 (227)
T ss_dssp             --CCCH
T ss_pred             cCCchH
Confidence            998644

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.23  E-value=3.4e-06  Score=65.65  Aligned_cols=64  Identities=13%  Similarity=0.229  Sum_probs=50.8

Q ss_pred             cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeec--CCCCccccCCC-CCCCEEEEEe
Q 036691          293 WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRL--FENHVLARYNI-QKHSTLHMVL  356 (426)
Q Consensus       293 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L--~d~~tL~~y~I-~~~~ti~l~~  356 (426)
                      ..+..+.+.+.|++||..+|++|++++|||+++|+|+|+|+.|  +++..-..|-- .....|.|+-
T Consensus        21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s   87 (94)
T 4efo_A           21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS   87 (94)
T ss_dssp             TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred             ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence            3678899999999999999999999999999999999999876  45555556643 3344454443

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.15  E-value=9.2e-07  Score=67.40  Aligned_cols=70  Identities=14%  Similarity=0.265  Sum_probs=60.1

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeE-----eecccccccccccccCcEEEE
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKL-----LKEDTATMTSMNIKSESIIHL  132 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~-----L~d~~~tL~~y~I~~~s~i~l  132 (426)
                      ..|.|.||+.+| +.. +++++++|+.+|+++|++..+++++.|.+.++...     +.. +.+|+++||++|++|++
T Consensus         3 ~~m~lRvrs~~G-~~R-i~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~-~~~l~~lgl~hGd~l~l   77 (80)
T 2pjh_A            3 ESIIIRVQSPDG-VKR-ITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASS-SKSLHLLKIKHGDLLFL   77 (80)
T ss_dssp             CCCCCEEECSSE-EEE-CCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCC-CCTTTTTCCCTTCCEEC
T ss_pred             CcEEEEEECCCC-CEE-EEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCC-CCCHHHcCCCCCCEEEE
Confidence            458899999887 666 88999999999999999999999999888766554     334 78999999999999986

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.14  E-value=1e-05  Score=63.68  Aligned_cols=72  Identities=11%  Similarity=0.150  Sum_probs=67.1

Q ss_pred             CCcEEEEEecCCc-EEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691          284 SPFQIFVKTWGGK-TITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       284 ~~m~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~  355 (426)
                      ..+.|.|+..+|. .+.+.|.++++...|...-+++.|+++...+++|.|..|.++.|..++++++|++|.+.
T Consensus        24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            4577888888884 89999999999999999999999999999999999999999999999999999999874

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.12  E-value=2e-05  Score=58.16  Aligned_cols=70  Identities=14%  Similarity=0.262  Sum_probs=61.8

Q ss_pred             eEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCC-ceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691           63 KLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSD-QFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF  134 (426)
Q Consensus        63 ~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~  134 (426)
                      .+.++......+. +.|.++.+|..+-+.-..+.|||++ ..+|.|.|..|.. +.++.||++.+++.|.+++
T Consensus        11 ~~~~~~~~~~dl~-f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp-~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           11 TLLLRSSKSEDLR-LSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDP-NDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEESSSCCEE-EEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCT-TSBGGGSSCCTTCEEEEEC
T ss_pred             HHhhhccCCCCeE-EEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCc-cCChhhhCCcCCceeeeee
Confidence            4445555556677 8999999999999999999999999 8999999999999 9999999999999998754

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.11  E-value=9e-06  Score=63.27  Aligned_cols=62  Identities=16%  Similarity=0.208  Sum_probs=48.4

Q ss_pred             CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeec-cccccccccc-ccCcEEEE
Q 036691           70 TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKE-DTATMTSMNI-KSESIIHL  132 (426)
Q Consensus        70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d-~~~tL~~y~I-~~~s~i~l  132 (426)
                      .+..+. +.+.+++||..+|++|++++|||+++|+|+|+|+.|.- ++.....|-- ...+-|.|
T Consensus        22 ~a~~h~-v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L   85 (94)
T 4efo_A           22 QMTAHK-IYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFV   85 (94)
T ss_dssp             TTEEEE-EEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEE
T ss_pred             cceEEE-EEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEE
Confidence            677888 99999999999999999999999999999999987653 2455555543 23344444

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=98.09  E-value=1.1e-05  Score=73.11  Aligned_cols=79  Identities=6%  Similarity=0.164  Sum_probs=73.8

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      ..+.|.|++ +|..+.+.+.++++...|+...+++.|+|+++++++|.|+.+.++.|..+.+++++++|.+.....||..
T Consensus        20 ~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~t   98 (209)
T 3uf8_A           20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGST   98 (209)
T ss_dssp             SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCCC
T ss_pred             CcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccccc
Confidence            347788887 7888899999999999999999999999999999999999999999999999999999999999998854

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=98.03  E-value=6.8e-07  Score=86.49  Aligned_cols=79  Identities=6%  Similarity=0.175  Sum_probs=1.2

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      ..++|.|++ +|..+.+.|.++++...|++..+++.|+++..++++|+|+.+.++.|..++++++|++|+++....||+.
T Consensus        20 ~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~~   98 (360)
T 3ix6_A           20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGMR   98 (360)
T ss_dssp             ------------------------------------------------------------------------------CH
T ss_pred             CeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchHH
Confidence            346788887 6888999999999999999999999999999999999999999999999999999999999999999965

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=98.01  E-value=0.00017  Score=71.06  Aligned_cols=136  Identities=21%  Similarity=0.241  Sum_probs=110.9

Q ss_pred             CcEEEEeecccccHHHHHHHHHHHhC----CCCCceeEEec------CeecCCCccccccCCCCCcccccCCCCcEEEEE
Q 036691          222 EEIVRLEVEVLIVVRDVKEIVANIID----LSLGNQDLFYA------GTKLEACKTLASYGIKNNYVLDVLPSPFQIFVK  291 (426)
Q Consensus       222 g~~~~l~v~~~~tV~~lK~~I~~~~~----ip~~~q~L~~~------g~~L~d~~tL~~y~I~~~~~l~l~~~~m~i~v~  291 (426)
                      +-+.++..+|++||.++-.+|.++..    .+.++..|+..      |.=|++.+||..|++++++.+..-+.++.+.|.
T Consensus        12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~~~~~V~   91 (371)
T 3ivf_A           12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIR   91 (371)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECEEEEEEE
T ss_pred             ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCceeEEEEE
Confidence            66789999999999999999988874    35677788773      344888999999999999999987888999999


Q ss_pred             ecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEEcC---------eecCCCCccccCCCCCCCEEEEEee
Q 036691          292 TWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVFAG---------KRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       292 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~~g---------k~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      .++|....+.++++.|+.++-..|+.+.|+..... -|.+..         .-|+.++++.+.+.....++++..+
T Consensus        92 l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK  167 (371)
T 3ivf_A           92 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK  167 (371)
T ss_dssp             CTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence            99999999999999999999999999999876543 454432         4456677888877767777666444

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.99  E-value=2.2e-05  Score=60.16  Aligned_cols=76  Identities=16%  Similarity=0.081  Sum_probs=70.3

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      ..|.+.|-..+|+..++.|.|+.++.++-+..+.++|+.+++..|.|+++.|+-+.+++-.||.+|+++.|+-.-+
T Consensus         8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~   83 (90)
T 2al3_A            8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR   83 (90)
T ss_dssp             --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred             CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence            4578999999999999999999999999999999999999999999999999999999999999999999986543

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=97.91  E-value=0.00029  Score=69.42  Aligned_cols=125  Identities=16%  Similarity=0.186  Sum_probs=102.6

Q ss_pred             CcEEEEeccCCCcHHHHHHHHhhhhC----CCCCcEEEEE------CCeeccCCCCcccccCCCcceeeeccCcceeEEE
Q 036691          149 GEIVNLEVKHSFAIRDVKAIVGSVVG----VSAADHIMIY------EGKKLEDSKTLAFYDMKDECLLEMFPSSIQIFVR  218 (426)
Q Consensus       149 gk~~~i~v~~~~tV~~lK~~I~~~~g----ip~~~q~L~~------~g~~L~d~~tL~~y~I~~~s~i~l~~~~~~i~V~  218 (426)
                      +-+-++..+++.||.++...|.++..    .+.+++-|..      .|.+|++.+||..|++.+|+.++..+..+.+.|.
T Consensus        12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~~~~~V~   91 (371)
T 3ivf_A           12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIR   91 (371)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECEEEEEEE
T ss_pred             ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCceeEEEEE
Confidence            45557888999999999999988875    4678889988      6788999999999999999999999888999999


Q ss_pred             cCCCcEEEEeecccccHHHHHHHHHHHhCCCCCc-eeEEecC---------eecCCCccccccCC
Q 036691          219 TPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGN-QDLFYAG---------TKLEACKTLASYGI  273 (426)
Q Consensus       219 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~g---------~~L~d~~tL~~y~I  273 (426)
                      .++|....+++++++|+.++=..|..+.|+.... ..|.+..         .-|+.++++.+.+.
T Consensus        92 l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~  156 (371)
T 3ivf_A           92 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGV  156 (371)
T ss_dssp             CTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTC
T ss_pred             CcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCC
Confidence            9999999999999999999999999999987433 4455431         22455556665544

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.89  E-value=6.1e-05  Score=68.14  Aligned_cols=96  Identities=13%  Similarity=0.147  Sum_probs=81.5

Q ss_pred             EecCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           56 HQNLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        56 ~~~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      +.+.+.+.|.|+. +|+.+. +.+.++++...|+...+++.|+|+++++++|.|+.+.+ +.|..+..+.++++|.+...
T Consensus        16 ~~~~~~i~ikv~~-~~~~v~-~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~-~~Tpk~L~~ed~d~I~~~~e   92 (209)
T 3uf8_A           16 VKPETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHRE   92 (209)
T ss_dssp             --CCSEEEEEEEC-SSCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCT-TCCTTTTTCCTTEEEEEECS
T ss_pred             eCCCCcEEEEEEc-CCCEEE-EEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccC-CCChHHhhhcccccchhhcc
Confidence            3456788888887 788888 99999999999999999999999999999999999999 99999999999999999888


Q ss_pred             ccceeeeEeecccCcEEEEe
Q 036691          136 PKEILSIFVKAATGEIVNLE  155 (426)
Q Consensus       136 ~~~g~~i~Vk~~~gk~~~i~  155 (426)
                      ..||..+ +.+.+|-.+.+.
T Consensus        93 q~Gg~t~-~~~~sGl~~~vl  111 (209)
T 3uf8_A           93 QIGGSTV-VTTESGLKYEDL  111 (209)
T ss_dssp             CTTCCCC-EECTTSCEEEEE
T ss_pred             ccccccc-cCCCCceEEEEE
Confidence            8877643 445666655443

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.86  E-value=4.9e-05  Score=58.29  Aligned_cols=73  Identities=16%  Similarity=0.128  Sum_probs=68.3

Q ss_pred             cceeeeEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeeec
Q 036691          137 KEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMF  209 (426)
Q Consensus       137 ~~g~~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l~  209 (426)
                      .+||.+.|-.+++++.++.+.++.++.++-+.-.+++|+.++++.|.|+++.++-+..++.-++.+|+.++|+
T Consensus         7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv   79 (90)
T 2al3_A            7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMV   79 (90)
T ss_dssp             ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEE
T ss_pred             CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEE
Confidence            3578999999999999999999999999999999999999999999999999999999999999999999998

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.85  E-value=9.2e-05  Score=57.28  Aligned_cols=72  Identities=11%  Similarity=0.145  Sum_probs=67.6

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      ..+.|.|+. +|....+.+..++....|....+++.|+++...|++|.|..+.++.|-.+.++++|++|.+++
T Consensus        20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~   91 (95)
T 2l76_A           20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV   91 (95)
T ss_dssp             CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred             CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence            347888985 789999999999999999999999999999999999999999999999999999999998875

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.78  E-value=3.3e-06  Score=81.72  Aligned_cols=83  Identities=12%  Similarity=0.189  Sum_probs=2.4

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      +...+.|.|+. +|+.+. +.|.++++...|+...+++.|+++++++++|.|+.+.+ +.|.+++++++|++|++.....
T Consensus        18 ~~~~I~LKV~~-~g~~v~-FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~-~~TP~~L~MEDgD~Idv~~~Q~   94 (360)
T 3ix6_A           18 PETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHREQI   94 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCeEEEEEec-CCcEEE-EEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCC-CCChHHcCCCccchhhhhhccC
Confidence            55678888887 788888 99999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             ceeeeE
Q 036691          138 EILSIF  143 (426)
Q Consensus       138 ~g~~i~  143 (426)
                      |||..+
T Consensus        95 g~~~~Y  100 (360)
T 3ix6_A           95 GGMRTY  100 (360)
T ss_dssp             --CHHH
T ss_pred             chHHHH
Confidence            998554

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.70  E-value=4.9e-05  Score=62.62  Aligned_cols=71  Identities=18%  Similarity=0.219  Sum_probs=59.6

Q ss_pred             EEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCc-------------------------------------ceEEE
Q 036691          287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLH-------------------------------------LQSIV  329 (426)
Q Consensus       287 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-------------------------------------~q~L~  329 (426)
                      .+.|+.++|...++.|+.+.+|.+++..|+.+.||+..                                     .|+|-
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            58999999999999999999999999999999999855                                     33332


Q ss_pred             E--cCeecCCCCccccCCCCCCCEEEEEee
Q 036691          330 F--AGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       330 ~--~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      .  ++..|++++||.++||.++++|-|-.+
T Consensus        93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           93 TDDELNWLDHGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred             ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence            1  236788899999999999999866443

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.70  E-value=0.00017  Score=56.59  Aligned_cols=73  Identities=14%  Similarity=0.262  Sum_probs=66.5

Q ss_pred             cCCceeEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEE
Q 036691           58 NLSEMKLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHL  132 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l  132 (426)
                      .+..+.|.|+..+|. .+. +.|.++++...|...-+++.|++++..+++|.|..|.. +.|..++++.+|++|.+
T Consensus        22 ~~~~I~LkV~~~dg~~~v~-fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~-~~TP~dLdMEDgD~IDv   95 (97)
T 2jxx_A           22 TSQQLQLRVQGKEKHQTLE-VSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSG-RELPADLGMESGDLIEV   95 (97)
T ss_dssp             SCSEEEEEEEESSSSCEEE-EEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCS-CSCHHHHTCCTTEEEEE
T ss_pred             CCCeEEEEEEcCCCCEEEE-EEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEE
Confidence            346778888887885 788 99999999999999999999999999999999999999 99999999999999986

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.57  E-value=9.9e-06  Score=80.51  Aligned_cols=78  Identities=6%  Similarity=0.147  Sum_probs=0.0

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      .+.|.|++ +|..+.+.+.++++...|+...+++.|+|+.+++++|+|+.+.++.|..++++++|++|+++....||..
T Consensus        30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n  107 (389)
T 4da1_A           30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN  107 (389)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence            45677777 7888899999999999999999999999999999999999999999999999999999999999988854

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.46  E-value=0.00034  Score=52.84  Aligned_cols=69  Identities=17%  Similarity=0.281  Sum_probs=59.6

Q ss_pred             cEEEEEe--cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCC-----cceEEEEcCeecCCCCccccCCCCCCCEEEE
Q 036691          286 FQIFVKT--WGGKTITLDVQPYNTVQDVKVKLFDKLQTPL-----HLQSIVFAGKRLFENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       286 m~i~v~~--~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-----~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l  354 (426)
                      +.|++..  +.|+++.++++...||..|+..+.+.++++.     .+.|..-.|..|.++++|++|+|.+||.|.+
T Consensus         5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            3456654  6889999999999999999999999998776     3456788899999999999999999999975

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.35  E-value=0.00019  Score=59.07  Aligned_cols=69  Identities=14%  Similarity=0.235  Sum_probs=59.4

Q ss_pred             eeEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCC-cEEEEE-----------------------------------
Q 036691          141 SIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAA-DHIMIY-----------------------------------  184 (426)
Q Consensus       141 ~i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~-----------------------------------  184 (426)
                      .+.|+.++|...++.|+.+.||.+++..|.++.||+.. .+.|..                                   
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            56889999999999999999999999999999998854 344432                                   


Q ss_pred             ---CCeeccCCCCcccccCCCcceeeec
Q 036691          185 ---EGKKLEDSKTLAFYDMKDECLLEMF  209 (426)
Q Consensus       185 ---~g~~L~d~~tL~~y~I~~~s~i~l~  209 (426)
                         .+.+|++++||.+++|.+++++-|+
T Consensus        93 ~dd~~~WLD~srtL~EQGI~e~~tllLR  120 (128)
T 2kc2_A           93 TDDELNWLDHGRTLREQGVEEHETLLLR  120 (128)
T ss_dssp             CSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred             ccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence               1378999999999999999998886

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.20  E-value=0.0021  Score=49.68  Aligned_cols=72  Identities=15%  Similarity=0.220  Sum_probs=65.5

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF  134 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~  134 (426)
                      ..+.|.|+. +|.... +.+..++....|...-+++.|++++..|++|.|..+.+ +.|-.+.++.++++|.+++
T Consensus        20 ~~IniKV~~-~g~ev~-FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~-~~TP~~L~meD~DiID~~~   91 (95)
T 2l76_A           20 RLFPLKIRC-RADLVR-LPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSP-TATPRTLKLGVADIIDCVV   91 (95)
T ss_dssp             CCEEEEEEC-SSSEEE-EEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCT-TSCHHHHTCCSSCEEEEEE
T ss_pred             CeEEEEEEc-CCcEEE-EEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCC-CCCHhHcCCCCCCEEEEEE
Confidence            457778885 678888 99999999999999999999999999999999999999 9999999999999998743

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.15  E-value=6.2e-05  Score=74.75  Aligned_cols=83  Identities=11%  Similarity=0.181  Sum_probs=0.0

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      ...+.|.|+. +|..+. +.|.++++...|+...+++.|+++++++++|.|+.+.+ +.|.+++++.+|++|.+.....|
T Consensus        28 ~~~i~lkv~~-~~~~~~-~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~-~~Tp~~l~med~d~i~~~~~q~g  104 (389)
T 4da1_A           28 ETHINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQAPEDLDMEDNDIIEAHREQIG  104 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEEEec-CCcEEE-EEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCC-CCCHHHcCCCCCCEeeeeecccc
Confidence            3567777877 778888 99999999999999999999999999999999999999 99999999999999999999888


Q ss_pred             eeeeEe
Q 036691          139 ILSIFV  144 (426)
Q Consensus       139 g~~i~V  144 (426)
                      |...++
T Consensus       105 g~n~~~  110 (389)
T 4da1_A          105 GENLYF  110 (389)
T ss_dssp             ------
T ss_pred             ccccce
Confidence            876654

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=96.96  E-value=0.0036  Score=47.67  Aligned_cols=70  Identities=16%  Similarity=0.126  Sum_probs=60.3

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecC---CCCccccCCCCCCCEEEEE
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLF---ENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~---d~~tL~~y~I~~~~ti~l~  355 (426)
                      ...|.|+.++|..+.-.+..++||.+|..-|.. .+.+...+.|+  |-.+.+.   .+.||.+.|+.+.++|.+-
T Consensus         7 ~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve   81 (84)
T 3qx1_A            7 VSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   81 (84)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence            356889999999999999999999999999998 67888888997  4578883   4789999999999998764

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=96.85  E-value=0.0043  Score=46.76  Aligned_cols=69  Identities=9%  Similarity=0.236  Sum_probs=57.8

Q ss_pred             eeEEEEc--CCCceeEEEEEcCCCcHHHHHHHHHHHhCCCC-----CceEEEeCCeEeecccccccccccccCcEEEE
Q 036691           62 MKLFVKI--PTNQTATVVEAMPYHTVQNIKTMIQVKEGIQS-----DQFTLVYDGKLLKEDTATMTSMNIKSESIIHL  132 (426)
Q Consensus        62 m~i~Vk~--~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~-----~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l  132 (426)
                      +.|++..  -.|+++. +.++...||..|.+.+.+..+++.     .+.+..-.|..|.+ +.+|+||+|.+|+.+.+
T Consensus         5 I~ITidl~~y~~~~~D-LRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~-~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            5 IDITIDLKHYNGSVFD-LRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSG-ECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEEEECTTTTCCEEE-EEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEET-TSBTGGGTCCTTCEEEE
T ss_pred             EEEEEEeeccCCceEE-EECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcC-CCEEeeCCcCCCCEEEE
Confidence            4455554  4789999 999999999999999999998753     24566778889999 99999999999999875

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=96.59  E-value=0.011  Score=44.98  Aligned_cols=72  Identities=11%  Similarity=0.270  Sum_probs=60.9

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee--cccccccccccccCcEEEEE
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK--EDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~~tL~~y~I~~~s~i~l~  133 (426)
                      +...|-||.++|+.+. -....++||.+|..-|.. .+.++....|+  |-.+.|.  |.+.||.+.|+.+++++.+.
T Consensus         6 ~~~~i~iRlpdG~r~~-~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve   81 (84)
T 3qx1_A            6 PVSKLRIRTPSGEFLE-RRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   81 (84)
T ss_dssp             CEEEEEEECTTSCEEE-EEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred             CeEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence            4567888999999887 888899999999999988 67788888888  5578885  44789999999999998874

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=96.24  E-value=0.023  Score=45.19  Aligned_cols=73  Identities=23%  Similarity=0.350  Sum_probs=50.4

Q ss_pred             CcEEEEEec--CCcEEEEEEcCCCcHHHHHHHHHhH--hCCCC------cceEEEE----cCeecCCC------------
Q 036691          285 PFQIFVKTW--GGKTITLDVQPYNTVQDVKVKLFDK--LQTPL------HLQSIVF----AGKRLFEN------------  338 (426)
Q Consensus       285 ~m~i~v~~~--~g~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~----~gk~L~d~------------  338 (426)
                      ++.++|-..  ++..+.+.|-..|||.++|++|-+.  .|.|.      ++..|-|    .|+.|.|.            
T Consensus        11 ~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkr   90 (111)
T 4e71_A           11 PLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKR   90 (111)
T ss_dssp             EEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCC
T ss_pred             EEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceE
Confidence            344555433  3466888999999999999999875  35554      4556766    24566552            


Q ss_pred             -CccccCCCCCCCEEEEEee
Q 036691          339 -HVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       339 -~tL~~y~I~~~~ti~l~~~  357 (426)
                       .||++|+|.+|+++.|+.+
T Consensus        91 LNTL~HY~V~dgatl~l~~~  110 (111)
T 4e71_A           91 VNTLMHYNVRDGATLILSKV  110 (111)
T ss_dssp             CCBHHHHTCCTTCEEEEEEC
T ss_pred             ecchhhcCCCCCCEEEEEeC
Confidence             5899999999999988754

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=96.05  E-value=0.034  Score=44.49  Aligned_cols=75  Identities=8%  Similarity=0.194  Sum_probs=63.4

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee--cccccccccccccCcEEEEEee
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK--EDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      ....|-||.++|..+. -....++||.+|.+-|....+.+.....|+  |-.+.+.  |.+.||.+.|+.+.+++.+...
T Consensus        12 ~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~   90 (109)
T 2dzk_A           12 TIARIQFRLPDGSSFT-NQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA   90 (109)
T ss_dssp             CCEEEEEECSSSCEEE-EEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred             CcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence            4578899999999888 899999999999999999888777777787  5678886  4478999999999988887543

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=95.96  E-value=0.025  Score=46.38  Aligned_cols=72  Identities=13%  Similarity=0.195  Sum_probs=61.6

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeec--CC-CCccccCCCCCCCEEEEE
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRL--FE-NHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L--~d-~~tL~~y~I~~~~ti~l~  355 (426)
                      .+...|.||.++|..+.-.+.+++||.+|..-|... +.+.....|+  |-.+.|  .| +.||.+.|+.+..+|.+.
T Consensus        41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~  117 (124)
T 1wj4_A           41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence            345779999999999999999999999999999887 8888888886  457888  34 789999999998888664

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=95.90  E-value=0.059  Score=43.77  Aligned_cols=65  Identities=23%  Similarity=0.355  Sum_probs=50.0

Q ss_pred             CCcEEEEEEcCCCcHHHHHHHHHhH--hCCCC------cceEEEE-cC---e-ecCCC-------------CccccCCCC
Q 036691          294 GGKTITLDVQPYNTVQDVKVKLFDK--LQTPL------HLQSIVF-AG---K-RLFEN-------------HVLARYNIQ  347 (426)
Q Consensus       294 ~g~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~-~g---k-~L~d~-------------~tL~~y~I~  347 (426)
                      ++..+.+.|-..|||.++|++|.+.  .|.|.      ++..|-| .|   + .|.|.             .||.+|+|.
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            4567889999999999999999875  35554      5677766 23   3 36552             589999999


Q ss_pred             CCCEEEEEeec
Q 036691          348 KHSTLHMVLAP  358 (426)
Q Consensus       348 ~~~ti~l~~~~  358 (426)
                      +|+++.|..+.
T Consensus        95 dgatv~l~~~~  105 (127)
T 3h6n_A           95 EGASLAMSLID  105 (127)
T ss_dssp             TTCEEEEEECC
T ss_pred             CCCEEEEEEcc
Confidence            99999998664

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=95.85  E-value=0.031  Score=44.71  Aligned_cols=73  Identities=10%  Similarity=0.122  Sum_probs=62.8

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecC--C-CCccccCCCCCCCEEEEEee
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLF--E-NHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~--d-~~tL~~y~I~~~~ti~l~~~  357 (426)
                      ...|.||.++|..+.-.+..++||.+|.+-|....+.+.....|+  |-.|.+.  | +.||.+.|+.+.++|++...
T Consensus        13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~   90 (109)
T 2dzk_A           13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA   90 (109)
T ss_dssp             CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence            457899999999999999999999999999999988887888885  4578886  3 68999999999988877653

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=95.42  E-value=0.05  Score=44.55  Aligned_cols=73  Identities=12%  Similarity=0.274  Sum_probs=62.4

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEe--ecccccccccccccCcEEEEE
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLL--KEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L--~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      .....|-||.++|..+. -....++||.+|..-|... |.++....|+  |-.+.|  .|.+.||.+.++.+.+++.+.
T Consensus        41 ~~~t~IqIRlPdG~rl~-~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~  117 (124)
T 1wj4_A           41 GPKAQLMLRYPDGKREQ-ITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             SCEEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             CCcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence            45778999999999888 8889999999999999887 7777888887  668888  455789999999998888774

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=95.24  E-value=0.11  Score=41.36  Aligned_cols=64  Identities=17%  Similarity=0.278  Sum_probs=46.1

Q ss_pred             CceeEEEEEcCCCcHHHHHHHHHHHh--CCC------CCceEEEe----CCeEeeccc------------cccccccccc
Q 036691           71 NQTATVVEAMPYHTVQNIKTMIQVKE--GIQ------SDQFTLVY----DGKLLKEDT------------ATMTSMNIKS  126 (426)
Q Consensus        71 g~~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~----~g~~L~d~~------------~tL~~y~I~~  126 (426)
                      +..+. +.|-..|||.++|++|-+..  |.|      +++..|-+    .|+.|.|.+            +||++|+|.+
T Consensus        23 ~~~i~-vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  101 (111)
T 4e71_A           23 VDAIP-VKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD  101 (111)
T ss_dssp             CCCEE-EEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred             CCcee-eeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence            45566 88889999999999998763  554      45666766    345666522            4799999999


Q ss_pred             CcEEEEEee
Q 036691          127 ESIIHLVFC  135 (426)
Q Consensus       127 ~s~i~l~~~  135 (426)
                      |+++.|+.+
T Consensus       102 gatl~l~~~  110 (111)
T 4e71_A          102 GATLILSKV  110 (111)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEeC
Confidence            999988543

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=95.16  E-value=0.084  Score=42.41  Aligned_cols=74  Identities=18%  Similarity=0.306  Sum_probs=51.8

Q ss_pred             CcEEEEEecC---CcEEEEEEcCCCcHHHHHHHHHhH--hCCCC------cceEEEE-cC---e-ecCCC----------
Q 036691          285 PFQIFVKTWG---GKTITLDVQPYNTVQDVKVKLFDK--LQTPL------HLQSIVF-AG---K-RLFEN----------  338 (426)
Q Consensus       285 ~m~i~v~~~~---g~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~-~g---k-~L~d~----------  338 (426)
                      ++.++|-...   ...+.+.|-..|||.++|++|.+.  .|.|.      ++..|-| .|   + .|.|.          
T Consensus        13 ~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~w   92 (117)
T 4e74_A           13 TLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDW   92 (117)
T ss_dssp             EEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---C
T ss_pred             EEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcc
Confidence            3445544332   345888899999999999999875  35554      4556765 33   2 35442          


Q ss_pred             ---CccccCCCCCCCEEEEEeec
Q 036691          339 ---HVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       339 ---~tL~~y~I~~~~ti~l~~~~  358 (426)
                         .||++|+|.+|+++.|+.+.
T Consensus        93 krLNTL~HY~V~dgatl~l~~~~  115 (117)
T 4e74_A           93 KRLNTLAHYQVPDGSVVALVSKQ  115 (117)
T ss_dssp             CCCCBHHHHTCCTTCEEEEEECC
T ss_pred             eEeccccccCCCCCCEEEEEeCC
Confidence               58999999999999998764

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=95.02  E-value=0.12  Score=42.68  Aligned_cols=76  Identities=20%  Similarity=0.345  Sum_probs=53.2

Q ss_pred             CCcEEEEEecC------CcEEEEEEcCCCcHHHHHHHHHhH--hCCCC------cceEEEE----cCe-ecCCC------
Q 036691          284 SPFQIFVKTWG------GKTITLDVQPYNTVQDVKVKLFDK--LQTPL------HLQSIVF----AGK-RLFEN------  338 (426)
Q Consensus       284 ~~m~i~v~~~~------g~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~----~gk-~L~d~------  338 (426)
                      .++.++|-...      ...+.+.|-..|||.++|++|.+.  .|+|.      ++.-|-|    +|+ .|.|.      
T Consensus        23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~  102 (138)
T 2r2o_A           23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEV  102 (138)
T ss_dssp             CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred             EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccc
Confidence            34556554432      256889999999999999999876  35544      3455655    233 36553      


Q ss_pred             -------CccccCCCCCCCEEEEEeecC
Q 036691          339 -------HVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       339 -------~tL~~y~I~~~~ti~l~~~~~  359 (426)
                             .||+.|+|.+|+++.|+.+..
T Consensus       103 ~~~wkrLNTL~HY~V~Dga~l~l~~~~~  130 (138)
T 2r2o_A          103 QGLWRRLNTLQHYKVPDGATVALVPCLT  130 (138)
T ss_dssp             ETTEEECCBHHHHTCCTTCEEEEEEC--
T ss_pred             cCCceeecchhccCCCCCCEEEEEECCC
Confidence                   489999999999999987653

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=94.52  E-value=0.13  Score=40.90  Aligned_cols=73  Identities=10%  Similarity=0.228  Sum_probs=59.7

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee-cccccccccccccCcEEEEEe
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK-EDTATMTSMNIKSESIIHLVF  134 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~-d~~~tL~~y~I~~~s~i~l~~  134 (426)
                      ...+|-||.++|+.+. -....++||.+|..-|... +..+....|+  |-.+.|. |.+.||.+.|+.+.+++.+..
T Consensus        22 ~~~~IqiRlpdG~r~~-rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           22 EVVTVALRCPNGRVLR-RRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             SEEEEEEECTTSCEEE-EEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             CcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            4578889999999887 8888999999999999965 5566677776  5678886 447899999999999887643

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=94.35  E-value=0.36  Score=39.01  Aligned_cols=60  Identities=23%  Similarity=0.482  Sum_probs=43.6

Q ss_pred             cEEEEEEcCCCcHHHHHHHHHhH----hCCCC----cceEEEE-cC---eecCC----------C----CccccCCCCCC
Q 036691          296 KTITLDVQPYNTVQDVKVKLFDK----LQTPL----HLQSIVF-AG---KRLFE----------N----HVLARYNIQKH  349 (426)
Q Consensus       296 ~~~~l~v~~~~tV~~lK~~i~~~----~gip~----~~q~L~~-~g---k~L~d----------~----~tL~~y~I~~~  349 (426)
                      ..+.+.|-..|||.++|++|.+.    .|.|.    ++..|-| .|   ..|.|          +    .||++|+|.+|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            56889999999999999999764    37765    3455544 12   23322          2    48999999999


Q ss_pred             CEEEEE
Q 036691          350 STLHMV  355 (426)
Q Consensus       350 ~ti~l~  355 (426)
                      +++.|+
T Consensus       119 atlal~  124 (126)
T 3kuz_A          119 STIKVF  124 (126)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            999775

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=94.25  E-value=0.14  Score=40.88  Aligned_cols=71  Identities=11%  Similarity=0.046  Sum_probs=59.0

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEE--EcCeecC--CCCccccCCCCCCCEEEEEe
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV--FAGKRLF--ENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~gk~L~--d~~tL~~y~I~~~~ti~l~~  356 (426)
                      ...|.|+..+|+.+.=.+..++||.+|..-|... +.......|+  |-.+.|.  .+.||.+.|+.+..+|.+..
T Consensus        23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            4678999999999999999999999999999965 5566777775  4577886  47899999999999986643

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=94.12  E-value=0.66  Score=33.55  Aligned_cols=68  Identities=13%  Similarity=0.141  Sum_probs=52.7

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ..|+|.|.... ...++++....||.+|.+.+    ++++....+..+|..+..+.     -+++||.|.++..+.||
T Consensus         3 ~~m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG   70 (70)
T 1ryj_A            3 IGMKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG   70 (70)
T ss_dssp             CCEEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred             eeEEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence            35888887643 34567888889999998876    67777777888999887664     68899999998877765

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=93.96  E-value=0.12  Score=42.35  Aligned_cols=71  Identities=14%  Similarity=0.314  Sum_probs=58.5

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHh-CCCCCceEEE--eCCeEeecccccccccccccCcEEE
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKE-GIQSDQFTLV--YDGKLLKEDTATMTSMNIKSESIIH  131 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~d~~~tL~~y~I~~~s~i~  131 (426)
                      ....|-||.++|..+. -....++||.+|.+-|.... +.......|+  |-.+.+.|.+.||.+.|+.+..++.
T Consensus        51 ~~t~IqIRlpdG~rl~-~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~  124 (127)
T 1s3s_G           51 PTTNIQIRLADGGRLV-QKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ  124 (127)
T ss_dssp             CCCCEEEEETTTTEEE-EECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred             CcEEEEEECCCCCEEE-EEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence            4678999999999888 89999999999999999863 4556677777  5688998767999999999865543

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=93.76  E-value=0.45  Score=38.61  Aligned_cols=65  Identities=15%  Similarity=0.248  Sum_probs=48.2

Q ss_pred             CCceeEEEEEcCCCcHHHHHHHHHHHh--CCC------CCceEEEe----CCe-Eeeccc------------cccccccc
Q 036691           70 TNQTATVVEAMPYHTVQNIKTMIQVKE--GIQ------SDQFTLVY----DGK-LLKEDT------------ATMTSMNI  124 (426)
Q Consensus        70 ~g~~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~d~~------------~tL~~y~I  124 (426)
                      ++..++ +.|-..|||.++|++|-+..  |+|      +++..|-|    .|+ .|.|.+            .||++|+|
T Consensus        15 ~~~~i~-VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V   93 (127)
T 3h6n_A           15 GMDSLS-VRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKI   93 (127)
T ss_dssp             CCCCEE-EEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTC
T ss_pred             CCCcee-eeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCC
Confidence            455676 88889999999999998763  554      46677776    333 355412            58999999


Q ss_pred             ccCcEEEEEee
Q 036691          125 KSESIIHLVFC  135 (426)
Q Consensus       125 ~~~s~i~l~~~  135 (426)
                      .+|+++.|..+
T Consensus        94 ~dgatv~l~~~  104 (127)
T 3h6n_A           94 PEGASLAMSLI  104 (127)
T ss_dssp             CTTCEEEEEEC
T ss_pred             CCCCEEEEEEc
Confidence            99999998655

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=93.62  E-value=0.17  Score=41.56  Aligned_cols=68  Identities=15%  Similarity=0.239  Sum_probs=56.1

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHh-CCCCcceEEE--EcCeecCC-CCccccCCCCCCCEE
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKL-QTPLHLQSIV--FAGKRLFE-NHVLARYNIQKHSTL  352 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~-gip~~~q~L~--~~gk~L~d-~~tL~~y~I~~~~ti  352 (426)
                      ...|.|+..+|..+.-.+..++||.+|.+-|.... +.+...+.|+  |-.+.++| +.||.+.|+.+...|
T Consensus        52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl  123 (127)
T 1s3s_G           52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV  123 (127)
T ss_dssp             CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence            46789999999999999999999999999999863 4556677776  45788875 689999999985544

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=93.52  E-value=0.16  Score=45.73  Aligned_cols=65  Identities=8%  Similarity=0.132  Sum_probs=53.1

Q ss_pred             EEEEEEcCCCcHHHHHHHHHhHhCCCCc-ceEE--EEcC---eecCC-CCccccCCCCCCCEEEEEeecCCC
Q 036691          297 TITLDVQPYNTVQDVKVKLFDKLQTPLH-LQSI--VFAG---KRLFE-NHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       297 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~L--~~~g---k~L~d-~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      .+++.++..+||.+|++.++...++|.+ +.||  ++.+   ..|++ +.||.+++|.++..|-+-.|...|
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg  212 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG  212 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            4678899999999999999999999997 6888  3322   45555 579999999999999888876655

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=93.39  E-value=0.24  Score=36.45  Aligned_cols=66  Identities=14%  Similarity=0.189  Sum_probs=51.8

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |+|.|+........+++.+..||++|-    ++.|+|++.-...-+|+.+..+.      +.+||+|.++--..||
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~   66 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG   66 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence            778888875566678999999999875    56799999998888999887666      3359999887666665

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=92.96  E-value=0.41  Score=38.39  Aligned_cols=64  Identities=17%  Similarity=0.356  Sum_probs=46.5

Q ss_pred             CceeEEEEEcCCCcHHHHHHHHHHHh--CCC------CCceEEEe-CC---e-Eeeccc------------ccccccccc
Q 036691           71 NQTATVVEAMPYHTVQNIKTMIQVKE--GIQ------SDQFTLVY-DG---K-LLKEDT------------ATMTSMNIK  125 (426)
Q Consensus        71 g~~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~-~g---~-~L~d~~------------~tL~~y~I~  125 (426)
                      ...+. +.|-..|||.++|++|-+..  |.|      +++..|-+ .|   + .|.|.+            .||++|+|.
T Consensus        26 ~~~i~-VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~  104 (117)
T 4e74_A           26 SPEVP-VKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVP  104 (117)
T ss_dssp             CCCEE-EEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCC
T ss_pred             CCceE-eeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCC
Confidence            34466 88889999999999998753  555      44566765 23   3 355422            579999999


Q ss_pred             cCcEEEEEee
Q 036691          126 SESIIHLVFC  135 (426)
Q Consensus       126 ~~s~i~l~~~  135 (426)
                      +|+++.|+.+
T Consensus       105 dgatl~l~~~  114 (117)
T 4e74_A          105 DGSVVALVSK  114 (117)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCEEEEEeC
Confidence            9999998655

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=92.91  E-value=0.33  Score=44.08  Aligned_cols=65  Identities=6%  Similarity=0.085  Sum_probs=54.2

Q ss_pred             EEEEEEcCCCcHHHHHHHHHhHhCCCCc-ceEEEE-c----CeecCC-CCccccCCCCCCCEEEEEeecCCC
Q 036691          297 TITLDVQPYNTVQDVKVKLFDKLQTPLH-LQSIVF-A----GKRLFE-NHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       297 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~-~----gk~L~d-~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      .+++.++..+||.+|++.++...++|.+ ..||-. .    ...|.| +.||.++++..+..|-+=.+-..|
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg  224 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG  224 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            4567889999999999999999999997 688843 3    256665 689999999999999888876665

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=92.61  E-value=0.35  Score=43.90  Aligned_cols=65  Identities=9%  Similarity=0.022  Sum_probs=54.3

Q ss_pred             eEEEEEcCCCcHHHHHHHHHHHhCCCCC-ceEEEe-C----CeEeecccccccccccccCcEEEEEeeccce
Q 036691           74 ATVVEAMPYHTVQNIKTMIQVKEGIQSD-QFTLVY-D----GKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        74 ~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~-~----g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      ++ ..++..+||.++++++.+..++|++ +-||-. .    ...|.|.+.||.++++.++..|.+-.+-.+|
T Consensus       154 ~~-~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg  224 (231)
T 3jyu_A          154 LS-CHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG  224 (231)
T ss_dssp             EE-EEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred             EE-EEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            45 6779999999999999999999997 688853 2    3477775689999999999999998886665

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=92.60  E-value=0.43  Score=35.55  Aligned_cols=62  Identities=15%  Similarity=0.214  Sum_probs=55.4

Q ss_pred             EEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          298 ITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       298 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      +.-.++-..++..||+.++.+.|++.+...+...+..|+++++|.+-+++-...+.+.+...
T Consensus         5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqik   66 (89)
T 2juo_A            5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQVI   66 (89)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEEE
T ss_pred             hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEEE
Confidence            44456777889999999999999999999999999999999999999999999999987653

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=92.59  E-value=0.52  Score=38.79  Aligned_cols=64  Identities=17%  Similarity=0.369  Sum_probs=46.7

Q ss_pred             ceeEEEEEcCCCcHHHHHHHHHHHh--CCC------CCceEEEe----CCe-Eeeccc------------cccccccccc
Q 036691           72 QTATVVEAMPYHTVQNIKTMIQVKE--GIQ------SDQFTLVY----DGK-LLKEDT------------ATMTSMNIKS  126 (426)
Q Consensus        72 ~~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~d~~------------~tL~~y~I~~  126 (426)
                      ..++ +.|-..|||.++|++|-+..  |+|      +++.-|-+    +|+ .|.|.+            .||++|+|.+
T Consensus        41 ~~i~-VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D  119 (138)
T 2r2o_A           41 QGVP-VKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD  119 (138)
T ss_dssp             CCEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred             Ccee-EEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence            4566 88999999999999998874  454      34455655    343 365511            3899999999


Q ss_pred             CcEEEEEeec
Q 036691          127 ESIIHLVFCP  136 (426)
Q Consensus       127 ~s~i~l~~~~  136 (426)
                      |+++.|+.+.
T Consensus       120 ga~l~l~~~~  129 (138)
T 2r2o_A          120 GATVALVPCL  129 (138)
T ss_dssp             TCEEEEEEC-
T ss_pred             CCEEEEEECC
Confidence            9999996664

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=92.29  E-value=1.2  Score=34.50  Aligned_cols=73  Identities=11%  Similarity=0.112  Sum_probs=51.4

Q ss_pred             CCcEEEEEecC------C-cEEEEEEcCCCcHHHHHHHHHhHhC-C----------CCcceEEEEcCeecCCCCccccCC
Q 036691          284 SPFQIFVKTWG------G-KTITLDVQPYNTVQDVKVKLFDKLQ-T----------PLHLQSIVFAGKRLFENHVLARYN  345 (426)
Q Consensus       284 ~~m~i~v~~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~g-i----------p~~~q~L~~~gk~L~d~~tL~~y~  345 (426)
                      .+|.|.|+.+.      | ...++++....||.+|.+.+..+.. +          ......+.-+|+....     ++-
T Consensus         8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~   82 (98)
T 1vjk_A            8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE   82 (98)
T ss_dssp             -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred             CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence            46888888872      3 4677888888999999999987742 1          1233556778877753     667


Q ss_pred             CCCCCEEEEEeecCCC
Q 036691          346 IQKHSTLHMVLAPSSR  361 (426)
Q Consensus       346 I~~~~ti~l~~~~~gg  361 (426)
                      +++||.|.++..+.||
T Consensus        83 L~dGDeV~i~ppv~GG   98 (98)
T 1vjk_A           83 LKDGDVVGVFPPVSGG   98 (98)
T ss_dssp             CCTTCEEEEESCC---
T ss_pred             CCCCCEEEEECCCCCC
Confidence            8999999888777665

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.24  E-value=0.17  Score=37.80  Aligned_cols=64  Identities=9%  Similarity=0.108  Sum_probs=56.0

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE---cCeecCCCCccccCCCCC
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF---AGKRLFENHVLARYNIQK  348 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~gk~L~d~~tL~~y~I~~  348 (426)
                      ++.+.|.....+...+.|+|.-+..+|--.|+++..+.++...|.-   .+.+|+-+.+|.||||+.
T Consensus        10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE   76 (91)
T 2daj_A           10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE   76 (91)
T ss_dssp             CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred             EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence            4667788776677889999999999999999999999999999865   457788899999999987

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=91.73  E-value=0.45  Score=42.71  Aligned_cols=66  Identities=14%  Similarity=0.146  Sum_probs=53.6

Q ss_pred             eeEEEEEcCCCcHHHHHHHHHHHhCCCCC-ceEEE--e-CC--eEeecccccccccccccCcEEEEEeeccce
Q 036691           73 TATVVEAMPYHTVQNIKTMIQVKEGIQSD-QFTLV--Y-DG--KLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        73 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~--~-~g--~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      ..+ ..++..+||.+|++++.+..++|++ +-||-  + .+  ..|++++.||.++++.++..|.+-.|..+|
T Consensus       141 ~~~-~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg  212 (217)
T 4a3p_A          141 VVT-RRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG  212 (217)
T ss_dssp             EEE-EEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred             ceE-EEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            355 7889999999999999999999987 67874  3 33  366665679999999999999988886665

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=91.58  E-value=0.74  Score=33.60  Aligned_cols=71  Identities=10%  Similarity=0.133  Sum_probs=47.7

Q ss_pred             cEEEEEecCC-cEEEEEEcCCCcHHHHHHHHHhHhCCCC--cceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGG-KTITLDVQPYNTVQDVKVKLFDKLQTPL--HLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g-~~~~l~v~~~~tV~~lK~~i~~~~gip~--~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |.+.|+.+.. +.-++++ ...||.+|.+.+..+.++..  ..-.+.-||....+    .+.-+++||.|.++..+.||
T Consensus         1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG   74 (74)
T 3rpf_C            1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG   74 (74)
T ss_dssp             CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred             CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence            5566666532 1123666 66799999999987544332  34556667776543    35678999999998888776

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=91.18  E-value=0.59  Score=35.09  Aligned_cols=47  Identities=17%  Similarity=0.198  Sum_probs=41.3

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAG  332 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g  332 (426)
                      .+|.|.|+.-  -++.++|.++.+..+|+++|.++.++|++.-.|.|.-
T Consensus         4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            3467777764  7999999999999999999999999999999998865

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.99  E-value=0.73  Score=34.48  Aligned_cols=64  Identities=14%  Similarity=0.256  Sum_probs=51.4

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe---CCeEeeccccccccccccc
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY---DGKLLKEDTATMTSMNIKS  126 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~L~d~~~tL~~y~I~~  126 (426)
                      +.++.|.....+... +.|+|..+..++-..|.++..+.|+.-.|.-   .+..|+- +++|.||||+.
T Consensus        10 TvRLvVNy~~tQKtV-vRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdL-skSLndlgirE   76 (91)
T 2daj_A           10 TVRVVINFKKTQKTI-VRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDL-TKSLNDLGLRE   76 (91)
T ss_dssp             CEEEEEEETTTEEEE-EEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCT-TSCHHHHTCSE
T ss_pred             EEEEEEeecCcceeE-EEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccch-hcchhhhhhhh
Confidence            334444554445555 8999999999999999999999999988874   4568888 99999999986

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=89.93  E-value=0.58  Score=34.37  Aligned_cols=67  Identities=16%  Similarity=0.175  Sum_probs=48.9

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecccee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEIL  140 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g~  140 (426)
                      |+|.|+..+..... ++++.+.||++|-++    .|+|++.-...-+|+.+.. +.      +.+|+++.++.-..||.
T Consensus         1 M~v~Vkl~g~~~~~-~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~-d~------~l~GD~VeIv~~V~G~~   67 (74)
T 2l32_A            1 MNVTVEVVGEETSE-VAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPE-DQ------SVEVDRVKVLRLIKGGL   67 (74)
T ss_dssp             CEEEEECSSSSEEE-EECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCT-TS------SSCCCCEEECSSCSCC-
T ss_pred             CEEEEEEeCcccee-EEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCH-HH------CCCCCEEEEEEeecccc
Confidence            77888886444455 899999999998764    7899999877789988866 43      34589998844444443

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=89.57  E-value=2.2  Score=31.80  Aligned_cols=56  Identities=13%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             EEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeee
Q 036691          153 NLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEM  208 (426)
Q Consensus       153 ~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l  208 (426)
                      .-.++-..++..||+.++.+.|++.+.+.+...+..|+++++|-+-+++-...+.+
T Consensus         6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQi   61 (89)
T 2juo_A            6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQL   61 (89)
T ss_dssp             EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEE
T ss_pred             hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEE
Confidence            34566678899999999999999999999999999999999999999988777665

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=89.50  E-value=1.1  Score=34.05  Aligned_cols=68  Identities=10%  Similarity=0.092  Sum_probs=47.2

Q ss_pred             CCcEEEEEecCCcEEEEEEcCC-CcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPY-NTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~-~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ..|+|.|   +|+.+  ++... .||.+|.+.+    ++++....+..+|..+..+ ...+.-+++||.|.++..+.||
T Consensus        19 ~~M~I~v---NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG   87 (87)
T 1tyg_B           19 GRHMLQL---NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG   87 (87)
T ss_dssp             ---CEEE---TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred             cceEEEE---CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence            3566765   55644  45665 8999998766    6777777788888887543 3556679999999998877665

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=89.25  E-value=0.96  Score=33.94  Aligned_cols=48  Identities=17%  Similarity=0.236  Sum_probs=41.5

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK  110 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~  110 (426)
                      ..|.|.|+.-  -++. +.|+++.+..+|.++|.++.++|++.-.|.|...
T Consensus         4 ~~~~VKV~~~--~tva-irvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~   51 (83)
T 1oey_A            4 MAYTLKVHYK--YTVV-MKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR   51 (83)
T ss_dssp             SCEEEEEESS--SEEE-EEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred             CcEEEEEEEE--EEEE-EECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence            4567777764  6999 9999999999999999999999999999988654

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=88.99  E-value=2.7  Score=43.07  Aligned_cols=76  Identities=16%  Similarity=0.246  Sum_probs=53.4

Q ss_pred             CCcEEEEEecC---CcEEEEEEcCCCcHHHHHHHHHhH--hCCC------CcceEEEE-c---Ce-ecCCC---------
Q 036691          284 SPFQIFVKTWG---GKTITLDVQPYNTVQDVKVKLFDK--LQTP------LHLQSIVF-A---GK-RLFEN---------  338 (426)
Q Consensus       284 ~~m~i~v~~~~---g~~~~l~v~~~~tV~~lK~~i~~~--~gip------~~~q~L~~-~---gk-~L~d~---------  338 (426)
                      .++.++|-..+   ...+.+.|-..|||.++|++|-+.  .|.|      +++..|-| .   |+ .|.|.         
T Consensus       232 ~~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~  311 (627)
T 3ig3_A          232 KTLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECD  311 (627)
T ss_dssp             CEEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred             eeEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCc
Confidence            34556665443   366889999999999999999875  3454      45566765 2   22 35442         


Q ss_pred             ----CccccCCCCCCCEEEEEeecC
Q 036691          339 ----HVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       339 ----~tL~~y~I~~~~ti~l~~~~~  359 (426)
                          .||++|+|.+|+++.|+.+..
T Consensus       312 wkrLNTL~HY~V~Dga~v~L~p~~~  336 (627)
T 3ig3_A          312 WKRVNSLAHYQVTDGSLVALVPKQV  336 (627)
T ss_dssp             EEECCBTTTTTCCTTCEEEEEEC--
T ss_pred             eeEecchhhcCCCCCceEEEEeccc
Confidence                589999999999999988753

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=88.95  E-value=3.7  Score=29.45  Aligned_cols=67  Identities=13%  Similarity=0.168  Sum_probs=48.3

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      .|+|.|....+ ... ++++...||.+|.+.+    ++++..-....+|..... +.     -+++|+.|.++-...||
T Consensus         4 ~m~i~vNg~~~-~~~-~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~-~~-----~L~~gD~V~ii~~V~GG   70 (70)
T 1ryj_A            4 GMKFTVITDDG-KKI-LESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVID-EE-----EIFDGDIIEVIRVIYGG   70 (70)
T ss_dssp             CEEEEEEETTE-EEE-EEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCT-TS-----BCCTTCEEEEEECTTCC
T ss_pred             eEEEEEeCccC-cee-EECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCC-cc-----cCCCCCEEEEEeccccC
Confidence            57888876332 344 7788889999998865    677777777789998876 33     67889999985544443

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=88.48  E-value=3.1  Score=42.72  Aligned_cols=64  Identities=20%  Similarity=0.405  Sum_probs=47.2

Q ss_pred             cEEEEEEcCCCcHHHHHHHHHhH--hCCCC------cceEEEE-c---Ce-ecCCC-------------CccccCCCCCC
Q 036691          296 KTITLDVQPYNTVQDVKVKLFDK--LQTPL------HLQSIVF-A---GK-RLFEN-------------HVLARYNIQKH  349 (426)
Q Consensus       296 ~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~-~---gk-~L~d~-------------~tL~~y~I~~~  349 (426)
                      ..+.+.|-..|||.++|++|-+.  .|.|.      ++..|-| .   |+ .|.|.             .||++|+|.+|
T Consensus       274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  353 (644)
T 3hm6_X          274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  353 (644)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred             CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence            45888999999999999999865  35554      4556655 2   22 35552             58999999999


Q ss_pred             CEEEEEeecC
Q 036691          350 STLHMVLAPS  359 (426)
Q Consensus       350 ~ti~l~~~~~  359 (426)
                      +++.|+.+..
T Consensus       354 a~v~L~p~~~  363 (644)
T 3hm6_X          354 ATVALVPCLT  363 (644)
T ss_dssp             CEEEEEEC--
T ss_pred             cEEEEEeccc
Confidence            9999887653

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=87.64  E-value=5.4  Score=29.84  Aligned_cols=61  Identities=16%  Similarity=0.089  Sum_probs=45.8

Q ss_pred             cEEEEEEcCCCcHHHHHHHHHhHhC-CC----------CcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          296 KTITLDVQPYNTVQDVKVKLFDKLQ-TP----------LHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       296 ~~~~l~v~~~~tV~~lK~~i~~~~g-ip----------~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ....+++....||.+|.+.+..+.. +.          .....+.-+|+....     ++-+++||.|.++..+.||
T Consensus        18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG   89 (89)
T 3po0_A           18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG   89 (89)
T ss_dssp             SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence            5677888888899999999988753 10          012466778887764     5678899999998888776

>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A

Probab=87.29  E-value=2.8  Score=38.99  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=57.7

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEE---cC--eecCCCCccccCCCCCCCEEEEEeec
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVF---AG--KRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~---~g--k~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      +|.+.|..++| ++.+.+++..|+.++-..|+.+.|+..... -|.+   +|  .-|+.++++.+.+++.+....+.+|.
T Consensus         1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~   79 (294)
T 1ef1_A            1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA   79 (294)
T ss_dssp             CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred             CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence            46788899988 788999999999999999999999987653 4444   23  24678889998877777777676665


Q ss_pred             C
Q 036691          359 S  359 (426)
Q Consensus       359 ~  359 (426)
                      +
T Consensus        80 k   80 (294)
T 1ef1_A           80 K   80 (294)
T ss_dssp             S
T ss_pred             E
Confidence            3

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=85.72  E-value=5  Score=30.77  Aligned_cols=73  Identities=11%  Similarity=0.143  Sum_probs=47.1

Q ss_pred             CceeEEEEcCC------C-ceeEEEEEcCCCcHHHHHHHHHHHhC-C----------CCCceEEEeCCeEeecccccccc
Q 036691           60 SEMKLFVKIPT------N-QTATVVEAMPYHTVQNIKTMIQVKEG-I----------QSDQFTLVYDGKLLKEDTATMTS  121 (426)
Q Consensus        60 ~~m~i~Vk~~~------g-~~~~~~~v~~~~tV~~lK~~I~~~~g-i----------p~~~q~L~~~g~~L~d~~~tL~~  121 (426)
                      ++|+|.|+...      | .... ++++...||.+|.+.+..... +          ......+.-+|+....      +
T Consensus         8 ~~~~v~V~~FA~lre~~g~~~~~-~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~------~   80 (98)
T 1vjk_A            8 GSVKVKVKYFARFRQLAGVDEEE-IELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------D   80 (98)
T ss_dssp             -CEEEEEEECTHHHHHHSSSEEE-EEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------T
T ss_pred             CcEEEEEEEhHHHHHHhCCCeEE-EECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC------C
Confidence            67888888752      4 3556 888888999999999887631 1          0123445566665532      5


Q ss_pred             cccccCcEEEEEeeccce
Q 036691          122 MNIKSESIIHLVFCPKEI  139 (426)
Q Consensus       122 y~I~~~s~i~l~~~~~~g  139 (426)
                      +-+++|+.|.+.-...||
T Consensus        81 ~~L~dGDeV~i~ppv~GG   98 (98)
T 1vjk_A           81 EELKDGDVVGVFPPVSGG   98 (98)
T ss_dssp             CBCCTTCEEEEESCC---
T ss_pred             CCCCCCCEEEEECCCCCC
Confidence            678899999885544443

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=85.43  E-value=4.5  Score=30.57  Aligned_cols=74  Identities=11%  Similarity=0.042  Sum_probs=47.2

Q ss_pred             cEEEEEec------CCcEEEEEEcCCCcHHHHHHHHHhHhCC------C-------CcceEEEEcCeecCCCCccccCCC
Q 036691          286 FQIFVKTW------GGKTITLDVQPYNTVQDVKVKLFDKLQT------P-------LHLQSIVFAGKRLFENHVLARYNI  346 (426)
Q Consensus       286 m~i~v~~~------~g~~~~l~v~~~~tV~~lK~~i~~~~gi------p-------~~~q~L~~~gk~L~d~~tL~~y~I  346 (426)
                      |.|.|+.+      .|...++++ +..||.+|.+.+..+..-      .       .....+.-+|.......- .++-+
T Consensus         1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L   78 (93)
T 3dwg_C            1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI   78 (93)
T ss_dssp             -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred             CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence            44555544      343334664 567999999999987520      0       012456667776654322 34678


Q ss_pred             CCCCEEEEEeecCCC
Q 036691          347 QKHSTLHMVLAPSSR  361 (426)
Q Consensus       347 ~~~~ti~l~~~~~gg  361 (426)
                      ++|+.|.++..+.||
T Consensus        79 ~~gDeV~i~Ppv~GG   93 (93)
T 3dwg_C           79 ADGDSVTILPAVAGG   93 (93)
T ss_dssp             CTTCEEEEEECCTTC
T ss_pred             CCCCEEEEECCCCCC
Confidence            999999999888876

>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A

Probab=85.41  E-value=3.6  Score=38.68  Aligned_cols=76  Identities=9%  Similarity=0.108  Sum_probs=59.5

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEE--cC--eecCCCCccccCCCCCCCEEEEEee
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVF--AG--KRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~--~g--k~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      +.++.+.|..++| ++.+.+++..|+.++-..|+.+.|+...+. -|.|  +|  .-|+.++++.+.+++.+....+.+|
T Consensus        20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr   98 (314)
T 1h4r_A           20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL   98 (314)
T ss_dssp             -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred             CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence            4567889999998 888999999999999999999999986543 3544  33  2478888999988777776666666


Q ss_pred             cC
Q 036691          358 PS  359 (426)
Q Consensus       358 ~~  359 (426)
                      .+
T Consensus        99 ~k  100 (314)
T 1h4r_A           99 AK  100 (314)
T ss_dssp             ES
T ss_pred             EE
Confidence            43

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=84.65  E-value=4.5  Score=32.60  Aligned_cols=58  Identities=17%  Similarity=0.081  Sum_probs=38.9

Q ss_pred             eeeccccCCCCCHHHHHHHHHHh------cC----ccceEEEe----cceecCCC--------------ccccccccCCC
Q 036691          368 IFIDPSISLSISISEVKEMAKVK------FQ----AAVKELLV----DQVALQDD--------------RTLADYGMDLS  419 (426)
Q Consensus       368 ~~~~~~~~~~~~v~~~k~~i~~~------~~----~~~q~l~~----~g~~L~d~--------------~~l~~~~i~~~  419 (426)
                      ..+.+.+=.-+||.++|++|-+.      .|    ++...|-+    .|..|.|.              -||++|+|..|
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            44566676778999999997644      21    33444544    23344442              47899999999


Q ss_pred             CeEEEe
Q 036691          420 EKVVLV  425 (426)
Q Consensus       420 ~~l~l~  425 (426)
                      +++-|+
T Consensus       119 atlal~  124 (126)
T 3kuz_A          119 STIKVF  124 (126)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            998764

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=84.10  E-value=2.8  Score=29.44  Aligned_cols=60  Identities=10%  Similarity=0.148  Sum_probs=43.9

Q ss_pred             CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      +|+.+.+   +..||.+|.+.+    ++++....+..+|..+..+ ...+.-+++||.|.++..+.||
T Consensus         5 Ng~~~~~---~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG   64 (64)
T 2cu3_A            5 NGEPRPL---EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG   64 (64)
T ss_dssp             TTEEECC---TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred             CCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence            6666644   568999998876    5667777778888877543 3455678999999998877665

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=83.38  E-value=1.6  Score=30.95  Aligned_cols=61  Identities=8%  Similarity=0.075  Sum_probs=44.5

Q ss_pred             CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          294 GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       294 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      +|+.+  ++....||.+|.+.+    +++.....+..+|...... ...+.-+++||.|.++..+.||
T Consensus         6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG   66 (66)
T 1f0z_A            6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG   66 (66)
T ss_dssp             SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred             CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence            55644  456778999998876    5677777778888877532 2345678999999998877665

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=82.92  E-value=4.9  Score=41.43  Aligned_cols=76  Identities=9%  Similarity=0.162  Sum_probs=59.6

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcc-eEEEEcC-----eecCCCCccccCCCCCCCEEEEEe
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHL-QSIVFAG-----KRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~L~~~g-----k~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      +.++.+.|..++| ++.+.++++.|+.+|-..|+.+.|++... .-|.|-.     ..|+.+.++.+.++..+....+.+
T Consensus         2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F   80 (575)
T 2i1j_A            2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF   80 (575)
T ss_dssp             -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred             CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence            3567889999998 78899999999999999999999997654 3455532     457778889988887777777766


Q ss_pred             ecC
Q 036691          357 APS  359 (426)
Q Consensus       357 ~~~  359 (426)
                      |.+
T Consensus        81 Rvk   83 (575)
T 2i1j_A           81 RAK   83 (575)
T ss_dssp             EES
T ss_pred             EEE
Confidence            653

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=82.23  E-value=3.2  Score=30.42  Aligned_cols=60  Identities=3%  Similarity=-0.034  Sum_probs=42.8

Q ss_pred             cEEEEEEcCCCcHHHHHHHHHhHhC-----CCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          296 KTITLDVQPYNTVQDVKVKLFDKLQ-----TPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       296 ~~~~l~v~~~~tV~~lK~~i~~~~g-----ip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ...+++ .+..||.+|.+.+..+..     ++.....+..+|+....     +.-+++|+.|.++..+.||
T Consensus        17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG   81 (81)
T 1fm0_D           17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG   81 (81)
T ss_dssp             SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred             CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence            345555 567799999999986532     23334567788887652     5578999999998877776

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=81.97  E-value=4.7  Score=30.46  Aligned_cols=69  Identities=9%  Similarity=0.102  Sum_probs=46.0

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCC-CcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPY-HTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~-~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      ...|+|.|.   |+.   ++++.. .||.+|.+.+    ++++..-.+..+|+.+..  ....+.-+++|+.|.++-...
T Consensus        18 ~~~M~I~vN---Ge~---~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~--~~~~~~~L~dGD~Vei~~~V~   85 (87)
T 1tyg_B           18 GGRHMLQLN---GKD---VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK--ERYHEVELCDRDVIEIVHFVG   85 (87)
T ss_dssp             ----CEEET---TEE---ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG--GGTTTSBCCSSSEEEEEEECC
T ss_pred             CcceEEEEC---CEE---EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh--hhcCCcCCCCCCEEEEEcccc
Confidence            356776664   554   556776 8999998865    677777777788888754  345567799999999865444


Q ss_pred             ce
Q 036691          138 EI  139 (426)
Q Consensus       138 ~g  139 (426)
                      ||
T Consensus        86 GG   87 (87)
T 1tyg_B           86 GG   87 (87)
T ss_dssp             C-
T ss_pred             cC
Confidence            43

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=81.64  E-value=2.1  Score=31.59  Aligned_cols=70  Identities=13%  Similarity=0.197  Sum_probs=49.7

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCC-CcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCcc
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTP-LHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRII  363 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip-~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~~  363 (426)
                      |.|.|   +|+.+.+......||.+|-+.    .|++ +...-+..+|..+..+ ...++-+++||.|.++..+.||.-
T Consensus         1 M~I~v---NGe~~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG~~   71 (78)
T 2k5p_A            1 MNLTV---NGKPSTVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGGKL   71 (78)
T ss_dssp             CEEEE---TTEEEECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCSCC
T ss_pred             CEEEE---CCEEEEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCCCc
Confidence            45544   566554321156899998764    4777 7777788899888544 466778899999999888877753

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=81.22  E-value=7  Score=40.04  Aligned_cols=66  Identities=14%  Similarity=0.310  Sum_probs=46.7

Q ss_pred             CceeEEEEEcCCCcHHHHHHHHHHHh--CCC------CCceEEEe----CCe-Eeeccc------------ccccccccc
Q 036691           71 NQTATVVEAMPYHTVQNIKTMIQVKE--GIQ------SDQFTLVY----DGK-LLKEDT------------ATMTSMNIK  125 (426)
Q Consensus        71 g~~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~d~~------------~tL~~y~I~  125 (426)
                      ...+. +.|-..|||.++|++|-+..  |+|      +++..|-+    +|+ .|.|.+            .||++|+|.
T Consensus       246 ~~~i~-vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~  324 (627)
T 3ig3_A          246 SAQVP-VKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVT  324 (627)
T ss_dssp             -CEEE-EEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCC
T ss_pred             CCcee-eEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCC
Confidence            34566 88889999999999998763  554      45666765    233 354411            479999999


Q ss_pred             cCcEEEEEeecc
Q 036691          126 SESIIHLVFCPK  137 (426)
Q Consensus       126 ~~s~i~l~~~~~  137 (426)
                      +|+++.|+-+..
T Consensus       325 Dga~v~L~p~~~  336 (627)
T 3ig3_A          325 DGSLVALVPKQV  336 (627)
T ss_dssp             TTCEEEEEEC--
T ss_pred             CCceEEEEeccc
Confidence            999999976643

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=80.70  E-value=1.5  Score=35.92  Aligned_cols=33  Identities=9%  Similarity=0.066  Sum_probs=30.1

Q ss_pred             EEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE
Q 036691          298 ITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF  330 (426)
Q Consensus       298 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~  330 (426)
                      .++.|..+.|+.+|+..|++..|+|+++|||-.
T Consensus        58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~   90 (130)
T 2kvr_A           58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP   90 (130)
T ss_dssp             EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred             ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence            457899999999999999999999999999943

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	426
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	2e-18
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	8e-12
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	7e-10
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	1e-07
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	7e-07
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	2e-18
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	6e-12
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-09
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-07
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-06
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	2e-17
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	2e-12
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	7e-08
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	3e-07
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	5e-05
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	4e-17
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	6e-13
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	1e-09
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	1e-07
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	9e-07
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	3e-16
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	2e-11
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	2e-08
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-06
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	6e-06
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	9e-16
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	5e-11
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	5e-09
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	3e-08
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	1e-05
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	6e-15
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	1e-11
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	3e-07
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	7e-07
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	4e-06
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	2e-14
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	1e-12
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	2e-05
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	2e-14
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	1e-10
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	2e-06
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	3e-05
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	1e-04
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	3e-14
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	5e-07
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	1e-04
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	2e-04
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	2e-04
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	4e-14
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-08
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	1e-06
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	2e-06
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	6e-06
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	9e-14
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	2e-09
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	1e-07
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	1e-07
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	2e-07
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	1e-13
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	3e-09
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	1e-07
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	5e-07
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	0.003
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	3e-13
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	5e-11
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	7e-08
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	3e-07
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-06
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	9e-13
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	4e-06
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	3e-05
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	3e-04
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	1e-12
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	2e-10
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	5e-07
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	1e-05
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	4e-05
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	1e-12
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	2e-07
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	7e-05
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	2e-04
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-12
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-09
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	1e-07
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	2e-07
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	6e-06
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	1e-12
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	2e-07
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-05
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	6e-04
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	7e-04
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-12
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	4e-11
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	5e-06
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-05
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	1e-04
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	2e-12
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	5e-10
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	4e-07
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	1e-05
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	4e-12
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	8e-06
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	8e-06
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	3e-05
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	0.001
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	4e-12
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	8e-10
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-05
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	0.001
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	0.003
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	5e-12
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	4e-10
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	7e-07
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	2e-05
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	4e-04
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	1e-11
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	4e-07
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	9e-07
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	3e-04
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	0.001
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	2e-11
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-07
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	2e-05
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	3e-05
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	6e-04
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	3e-11
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-08
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-05
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	3e-05
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	4e-05
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	3e-11
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	6e-08
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	1e-05
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	2e-05
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	4e-05
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	5e-11
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	2e-04
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	4e-04
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	8e-04
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	4e-10
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	2e-07
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	1e-05
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-09
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	7e-07
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	8e-04
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	0.004
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	1e-08
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	2e-06
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	6e-04
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	0.004
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	2e-08
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	7e-08
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	1e-07
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	4e-07
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	4e-05
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	2e-08
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	1e-05
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	3e-04
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	0.002
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	3e-08
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	9e-08
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	1e-04
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	4e-08
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	2e-06
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	1e-05
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	3e-04
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	0.001
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	5e-08
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	3e-07
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	7e-05
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	2e-04
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	1e-06
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	6e-06
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	0.002
d1wm3a_	72	d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId:	0.003

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 2e-18
 Identities = 20/73 (27%), Positives = 33/73 (45%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
            P  I V+   G++ T +V+   TV  +K ++         L  + F GK L +   L  
Sbjct: 2   EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGE 61

Query: 344 YNIQKHSTLHMVL 356
           Y ++  ST+ M L
Sbjct: 62  YGLKPLSTVFMNL 74

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 8e-12
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             + + V+    +++T  E     TV ++K  +   EG+Q D F L ++GK L ED   +
Sbjct: 2   EPLSILVRNNKGRSSTY-EVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQLPL 59

Query: 120 TSMNIKSESIIHLV 133
               +K  S + + 
Sbjct: 60  GEYGLKPLSTVFMN 73

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 7e-10
 Identities = 22/71 (30%), Positives = 32/71 (45%)

Query: 138 EILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAF 197
           E LSI V+   G     EV+ +  +  +K  V  + GV      + +EGK LED   L  
Sbjct: 2   EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGE 61

Query: 198 YDMKDECLLEM 208
           Y +K    + M
Sbjct: 62  YGLKPLSTVFM 72

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 16/72 (22%), Positives = 27/72 (37%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLAS 270
             + I VR         EV +   V  +K+ V+ +  +      L + G  LE    L  
Sbjct: 2   EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGE 61

Query: 271 YGIKNNYVLDVL 282
           YG+K    + + 
Sbjct: 62  YGLKPLSTVFMN 73

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 7e-07
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
           +V+ ++ + +LK  +   EG+ +D+  L F G  LE    L +YG++  ST+ 
Sbjct: 18 YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVF 71

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 2e-18
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           QIFVKT  GKTITL+V+P +T+++VK K+ DK   P   Q ++FAGK+L +   L+ YNI
Sbjct: 2   QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61

Query: 347 QKHSTLHMVL 356
           QK STLH+VL
Sbjct: 62  QKESTLHLVL 71

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 6e-12
 Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M++FVK  T +T T+ E  P  T++N+K  IQ KEGI  DQ  L++ GK   ED  T++ 
Sbjct: 1   MQIFVKTLTGKTITL-EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLSD 58

Query: 122 MNIKSESIIHLV 133
            NI+ ES +HLV
Sbjct: 59  YNIQKESTLHLV 70

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 3e-09
 Identities = 26/67 (38%), Positives = 41/67 (61%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           IFVK  TG+ + LEV+ S  I +VKA +    G+      +I+ GK+LED +TL+ Y+++
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62

Query: 202 DECLLEM 208
            E  L +
Sbjct: 63  KESTLHL 69

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           +QIFV+T   + + LEVE    + +VK  + +   +    Q L +AG +LE  +TL+ Y 
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 273 IKNNYVLDVL 282
           I+    L ++
Sbjct: 61  IQKESTLHLV 70

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++V+ S+ I+N+KA I  KEGI  D   L FAG +LE GR L DY I+  STLH
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.5 bits (183), Expect = 2e-17
 Identities = 15/75 (20%), Positives = 34/75 (45%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
            +FV+        ++V    ++  +K  +  +   P     ++FAGK L  +  +   ++
Sbjct: 4   IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDL 63

Query: 347 QKHSTLHMVLAPSSR 361
           ++ S +H+V  P  R
Sbjct: 64  EQQSIVHIVQRPRRR 78

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 18/76 (23%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M +FV+  ++    V E     ++  +K ++  ++G+ +DQ  +++ GK L  +  T+ +
Sbjct: 3   MIVFVRFNSSYGFPV-EVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKEL-PNHLTVQN 60

Query: 122 MNIKSESIIHLVFCPK 137
            +++ +SI+H+V  P+
Sbjct: 61  CDLEQQSIVHIVQRPR 76

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (112), Expect = 7e-08
 Identities = 16/67 (23%), Positives = 34/67 (50%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           +FV+  +     +EV    +I  +K +V    GV A    +I+ GK+L +  T+   D++
Sbjct: 5   VFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLE 64

Query: 202 DECLLEM 208
            + ++ +
Sbjct: 65  QQSIVHI 71

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          ++V     I  LK ++  ++G+  D   + FAG  L     + +  +   S +H
Sbjct: 17 VEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVH 70

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (91), Expect = 5e-05
 Identities = 13/71 (18%), Positives = 32/71 (45%)

Query: 212 SIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASY 271
            + +FVR        +EV+    +  +KE+VA    +      + +AG +L    T+ + 
Sbjct: 2   GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNC 61

Query: 272 GIKNNYVLDVL 282
            ++   ++ ++
Sbjct: 62  DLEQQSIVHIV 72

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (181), Expect = 4e-17
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S  Q+FVK   G +    + P + +  +K ++ D+   P   Q + F G+ L +   L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 344 YNIQKHSTLHMVL----APSS 360
           Y IQ   TL +       PSS
Sbjct: 66  YGIQDSDTLILSKKKGSGPSS 86

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 6e-13
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
           S +++FVK P   +       P   +  +K  I+ ++G+   Q  L + G++L +D   +
Sbjct: 6   SGIQVFVKNPDGGSYAY-AINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVL-QDWLGL 63

Query: 120 TSMNIKSESIIHLV 133
               I+    + L 
Sbjct: 64  GIYGIQDSDTLILS 77

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 14/67 (20%), Positives = 28/67 (41%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           +FVK   G      +  +  I  +K  +    G+      + ++G+ L+D   L  Y ++
Sbjct: 10  VFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQ 69

Query: 202 DECLLEM 208
           D   L +
Sbjct: 70  DSDTLIL 76

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 17/72 (23%), Positives = 31/72 (43%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLAS 270
           S IQ+FV+ P        +     +  +K+ + +   L    Q L + G  L+    L  
Sbjct: 6   SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGI 65

Query: 271 YGIKNNYVLDVL 282
           YGI+++  L + 
Sbjct: 66  YGIQDSDTLILS 77

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 9e-07
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
            +  +  I  LK  I  ++G+ +    L F G  L+    L  YGI+++ TL 
Sbjct: 22 YAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLI 75

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 71.1 bits (174), Expect = 3e-16
 Identities = 26/70 (37%), Positives = 43/70 (61%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
            I VKT  GK I +D++P +T+  +K ++ +K   P   Q +++AGK+L ++     YNI
Sbjct: 2   LIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNI 61

Query: 347 QKHSTLHMVL 356
           +  S LH+VL
Sbjct: 62  EGGSVLHLVL 71

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           M + VK  T +   + +  P  T+  IK  ++ KEGI   Q  L+Y GK L  D  T   
Sbjct: 1   MLIKVKTLTGKEIEI-DIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQL-ADDKTAKD 58

Query: 122 MNIKSESIIHLV 133
            NI+  S++HLV
Sbjct: 59  YNIEGGSVLHLV 70

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           I VK  TG+ + ++++ +  I  +K  V    G+      +IY GK+L D KT   Y+++
Sbjct: 3   IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIE 62

Query: 202 DECLLEM 208
              +L +
Sbjct: 63  GGSVLHL 69

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 19/69 (27%), Positives = 32/69 (46%)

Query: 214 QIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYGI 273
            I V+T   + + +++E    +  +KE V     +    Q L YAG +L   KT   Y I
Sbjct: 2   LIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNI 61

Query: 274 KNNYVLDVL 282
           +   VL ++
Sbjct: 62  EGGSVLHLV 70

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.8 bits (98), Expect = 6e-06
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          + ++ ++ I  +K  +  KEGI      L +AG +L   +   DY I   S LH
Sbjct: 15 IDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLH 68

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 9e-16
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            ++ VKT   +T T  V     V++ K  +   +  P   Q +++ G+ L ++  L  YN
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 346 IQKHSTLHMVLAP 358
           +     +H+V   
Sbjct: 61  VGGK-VIHLVERA 72

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 5e-11
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           +++ VK   +QT T         V+  K  I     I S++  L+Y G++L +D   +  
Sbjct: 1   LEVLVKTLDSQTRTF-IVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVL-QDDKKLQE 58

Query: 122 MNIKSESIIHLV 133
            N+    +IHLV
Sbjct: 59  YNVG-GKVIHLV 69

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 5e-09
 Identities = 14/66 (21%), Positives = 31/66 (46%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           L + VK    +     V     +++ K  + + V + +    +IY+G+ L+D K L  Y+
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 200 MKDECL 205
           +  + +
Sbjct: 61  VGGKVI 66

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (115), Expect = 3e-08
 Identities = 17/73 (23%), Positives = 32/73 (43%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           +++ V+T   +     V   + V++ KE +A  + +    Q L Y G  L+  K L  Y 
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 60

Query: 273 IKNNYVLDVLPSP 285
           +    +  V  +P
Sbjct: 61  VGGKVIHLVERAP 73

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
            V     +K  K  I     I  +   L + G  L+  + L +Y +     +H
Sbjct: 15 FIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIH 67

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (164), Expect = 6e-15
 Identities = 15/72 (20%), Positives = 31/72 (43%)

Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            Q+ ++   GK + L V+  +TV  +K +L          Q   F+G+ L +        
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 346 IQKHSTLHMVLA 357
           I K   + ++++
Sbjct: 64  IPKDYVVQVIVS 75

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 1e-11
 Identities = 11/74 (14%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
            E +L +++ T +   +       TV ++K  +   EG++       + G+ L +     
Sbjct: 2   YECQLRLRLSTGKDLKL-VVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKM-KF 59

Query: 120 TSMNIKSESIIHLV 133
             + I  + ++ ++
Sbjct: 60  EELKIPKDYVVQVI 73

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 3e-07
 Identities = 10/67 (14%), Positives = 30/67 (44%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           + ++ +TG+ + L V+ +  +  +K  + +  GV        + G+ L D        + 
Sbjct: 6   LRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIP 65

Query: 202 DECLLEM 208
            + ++++
Sbjct: 66  KDYVVQV 72

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 7e-07
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
            Q+ +R    + ++L V     V  +K  +     +  G+Q  F++G  L          
Sbjct: 4   CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 273 IKNNYVLD-VLPSP 285
           I  +YV+  ++  P
Sbjct: 64  IPKDYVVQVIVSQP 77

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 4e-06
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFL 55
          + V+ ++ + ++K  +H  EG+       FF+G  L       +  I  +  +  +
Sbjct: 18 LVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVI 73

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.9 bits (163), Expect = 2e-14
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLF-ENHVL 341
            S   + +K           +P +TV  +K K F           +++ G+ L      L
Sbjct: 5   SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPG---QESQMKLIYQGRLLQDPARTL 61

Query: 342 ARYNIQKHSTLHMVLAPSS 360
           +  NI  +  +H   +P  
Sbjct: 62  SSLNITNNCVIHCHRSPPG 80

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.5 bits (149), Expect = 1e-12
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
           S + + +K   +       A P  TV  +K+     +     Q  L+Y G+LL++   T+
Sbjct: 6   SGINVRLKFLNDTEELA-VARPEDTVGTLKSKYFPGQE---SQMKLIYQGRLLQDPARTL 61

Query: 120 TSMNIKSESIIHLVFCPKE 138
           +S+NI +  +IH    P  
Sbjct: 62  SSLNITNNCVIHCHRSPPG 80

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEAC-KTL 268
            S I + ++   +            V  +K               L Y G  L+   +TL
Sbjct: 5   SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPG---QESQMKLIYQGRLLQDPARTL 61

Query: 269 ASYGIKNNYVLDVLPSP 285
           +S  I NN V+    SP
Sbjct: 62  SSLNITNNCVIHCHRSP 78

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 2e-14
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQT---PLHLQSIVFAGKRLFENHVLAR 343
           Q+ +KT   +T  +D+ P  TV+ +K K+  +      P+  Q +++AGK L ++  L  
Sbjct: 2   QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKE 61

Query: 344 YNIQKHSTLHMVLAPSSRI 362
           Y I + + + +++     +
Sbjct: 62  YKIDEKNFVVVMVTKPKAV 80

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 1e-10
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVK---EGIQSDQFTLVYDGKLLKEDTAT 118
           M++ +K    QT  + +  P  TV+ +K  I+ +   +        L+Y GK+L  D   
Sbjct: 1   MQVTLKTLQQQTFKI-DIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKIL-NDDTA 58

Query: 119 MTSMNIKSESIIHLV 133
           +    I  ++ + ++
Sbjct: 59  LKEYKIDEKNFVVVM 73

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGS---VVGVSAADHIMIYEGKKLEDSKTLAFY 198
           + +K    +   +++     ++ +K  + S         A   +IY GK L D   L  Y
Sbjct: 3   VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62

Query: 199 DMKDECLLEMFPSSIQIFVRTP 220
            + ++       + + + V  P
Sbjct: 63  KIDEK-------NFVVVMVTKP 77

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 214 QIFVRTPIEEIVRLEVEVLIVVRDVKEIVA---NIIDLSLGNQDLFYAGTKLEACKTLAS 270
           Q+ ++T  ++  +++++    V+ +KE +          +  Q L YAG  L     L  
Sbjct: 2   QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKE 61

Query: 271 YGIKNNYVLDVLPSP 285
           Y I     + V+ + 
Sbjct: 62  YKIDEKNFVVVMVTK 76

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 1  MKVKKSEPIKNLKAMIHVK---EGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFL 55
          + +   E +K LK  I  +   +        L +AG  L     L +Y I   + +  +
Sbjct: 15 IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVM 73

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 3e-14
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF--AGKRLFENHVLAR 343
           + + VK   G    + +    +V ++K ++  K+      Q +    +G  L +   LA 
Sbjct: 1   WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLAS 60

Query: 344 YNIQKHSTLHMVLAPS 359
             +   ST+ +V+  S
Sbjct: 61  QGLGPGSTVLLVVDKS 76

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 64  LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLK-EDTATMTSM 122
           L VK+       V       +V  +K  I  K G+ + Q  L      +  +D   + S 
Sbjct: 3   LTVKMLAGNEFQV-SLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 123 NIKSESIIHLV 133
            +   S + LV
Sbjct: 62  GLGPGSTVLLV 72

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYE--GKKLEDSKTLAFYD 199
           + VK   G    + +  S ++ ++KA +   +GV A    +     G  L+D   LA   
Sbjct: 3   LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 62

Query: 200 MKDECLLEM 208
           +     + +
Sbjct: 63  LGPGSTVLL 71

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 3/58 (5%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDR--LEAGR-LVDYGIRNNSTLHFL 55
          + +  S  +  LKA I  K G+      L        L+    L   G+   ST+  +
Sbjct: 15 VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLV 72

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 214 QIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTK--LEACKTLASY 271
            + V+       ++ +   + V ++K  +   I +    Q L    +   L+    LAS 
Sbjct: 2   DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61

Query: 272 GIKNNYVLDVL 282
           G+     + ++
Sbjct: 62  GLGPGSTVLLV 72

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 4e-14
 Identities = 14/62 (22%), Positives = 31/62 (50%)

Query: 295 GKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHM 354
           G+ +   +   + V  +KVK+ +    P   Q + + G  + +++ LA YN+   + +H+
Sbjct: 21  GQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHL 80

Query: 355 VL 356
            L
Sbjct: 81  AL 82

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 6e-08
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 70  TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESI 129
             Q            V  IK  I    G+ + +  L Y+G    +D+ ++   N+ + ++
Sbjct: 20  NGQVLVF-TLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGI-FIKDSNSLAYYNMANGAV 77

Query: 130 IHLV 133
           IHL 
Sbjct: 78  IHLA 81

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
            +  ++ +  +K  IH   G+      L + G  ++    L  Y + N + +H
Sbjct: 26 FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIH 79

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 13/61 (21%), Positives = 32/61 (52%)

Query: 148 TGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLE 207
            G+++   +  +  +  +K  +    G+ A    + YEG  ++DS +LA+Y+M +  ++ 
Sbjct: 20  NGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIH 79

Query: 208 M 208
           +
Sbjct: 80  L 80

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 6e-06
 Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 210 PSSIQIFVRTPIEE--------IVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTK 261
           P SI++ V    ++        ++   + +   V  +K  +     +  G Q L Y G  
Sbjct: 1   PVSIKVQVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIF 60

Query: 262 LEACKTLASYGIKNNYVLDV 281
           ++   +LA Y + N  V+ +
Sbjct: 61  IKDSNSLAYYNMANGAVIHL 80

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.6 bits (157), Expect = 9e-14
 Identities = 10/74 (13%), Positives = 25/74 (33%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
            +  ++      GK + +     +T+ D+K  +  +  T  +   +        ++  L 
Sbjct: 26  ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLG 85

Query: 343 RYNIQKHSTLHMVL 356
            Y I     L +  
Sbjct: 86  DYEIHDGMNLELYY 99

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (126), Expect = 2e-09
 Identities = 9/75 (12%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
           + +++       +   V +     T+ ++K +I  + G + ++  L     + K+   ++
Sbjct: 27  TMIEVVCNDRLGKKVRV-KCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHV-SL 84

Query: 120 TSMNIKSESIIHLVF 134
               I     + L +
Sbjct: 85  GDYEIHDGMNLELYY 99

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 1   MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLHFLHQ 57
           +K    + I +LK +I  + G   +   L       +    L DY I +   L   +Q
Sbjct: 43  VKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 12/71 (16%), Positives = 28/71 (39%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
            + I++     + + VR++      + D+K+++A           L    T  +   +L 
Sbjct: 26  ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLG 85

Query: 270 SYGIKNNYVLD 280
            Y I +   L+
Sbjct: 86  DYEIHDGMNLE 96

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 12/74 (16%), Positives = 30/74 (40%)

Query: 136 PKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTL 195
              ++ +      G+ V ++      I D+K ++ +  G      ++       +D  +L
Sbjct: 25  AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSL 84

Query: 196 AFYDMKDECLLEMF 209
             Y++ D   LE++
Sbjct: 85  GDYEIHDGMNLELY 98

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (154), Expect = 1e-13
 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK---LQTPLHLQSIVFAGKRLFENHV 340
           S   I +KT   +T  + ++P  TV+ +K K+  +      P+  Q +++AGK L ++  
Sbjct: 1   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 60

Query: 341 LARYNIQKHSTLHMVL 356
           +  Y I + + + +++
Sbjct: 61  IRDYRIDEKNFVVVMV 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 3e-09
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG---IQSDQFTLVYDGKLLKEDT 116
           S + + +K    QT  +    P  TV+ +K  I+ ++G          L+Y GK+L  D 
Sbjct: 1   SAVTITLKTLQQQTFKI-RMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKIL-SDD 58

Query: 117 ATMTSMNIKSESIIHLV 133
             +    I  ++ + ++
Sbjct: 59  VPIRDYRIDEKNFVVVM 75

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVAN---IIDLSLGNQDLFYAGTKLEACKT 267
           S++ I ++T  ++  ++ +E    V+ +KE +          +  Q L YAG  L     
Sbjct: 1   SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP 60

Query: 268 LASYGIKNNYVLDVLPS 284
           +  Y I     + V+ +
Sbjct: 61  IRDYRIDEKNFVVVMVT 77

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 12/75 (16%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVG---VSAADHIMIYEGKKLEDSKTLA 196
           ++I +K    +   + ++    ++ +K  + +  G      A   +IY GK L D   + 
Sbjct: 3   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 62

Query: 197 FYDMKDECLLEMFPS 211
            Y + ++  + +  +
Sbjct: 63  DYRIDEKNFVVVMVT 77

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICD---LFFAGDRLEAGR-LVDYGIRNNSTLHFL 55
          ++++  E +K LK  I  ++G          L +AG  L     + DY I   + +  +
Sbjct: 17 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVM 75

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.5 bits (152), Expect = 3e-13
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
            I +K+ G     ++V P +TV   K  +      P+  Q ++++GK L ++  +  Y+I
Sbjct: 3   NIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHI 61

Query: 347 QKHSTLHMVLA 357
           Q   ++H+V +
Sbjct: 62  QDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.9 bits (135), Expect = 5e-11
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           + + +K   ++    V   P  TV   K  I    GI      L+Y GK+L +D  T+ S
Sbjct: 2   LNIHIKSGQDKW--EVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKIL-KDDQTVES 58

Query: 122 MNIKSESIIHLV 133
            +I+    +HLV
Sbjct: 59  YHIQDGHSVHLV 70

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (112), Expect = 7e-08
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           L+I +K+   +   + V     +   K  +    G+  A+  +IY GK L+D +T+  Y 
Sbjct: 2   LNIHIKSGQDKWE-VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 200 MKDECLLEM 208
           ++D   + +
Sbjct: 61  IQDGHSVHL 69

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          + V     +   K  I+   GI      L ++G  L+  + +  Y I++  ++H
Sbjct: 15 VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVH 68

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 212 SIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASY 271
           S+ I +++  ++   + V     V   KE +     + + NQ L Y+G  L+  +T+ SY
Sbjct: 1   SLNIHIKSGQDKWE-VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESY 59

Query: 272 GIKNNYVLDVLPS 284
            I++ + + ++ S
Sbjct: 60  HIQDGHSVHLVKS 72

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 9e-13
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
           P   ++ VKT   K     V    T+Q +K ++  + +       ++FAGK L +   LA
Sbjct: 5   PHLIKVTVKTPKDKE-DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLA 63

Query: 343 RYNIQKHSTLHMVLAPSSR 361
           +  ++   T+H+V+    R
Sbjct: 64  QCGVRDGLTVHLVIKRQHR 82

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
             +K+ VK P ++           T+Q +K  I  +     DQ  L++ GK+LK+   ++
Sbjct: 6   HLIKVTVKTPKDKE--DFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPD-SL 62

Query: 120 TSMNIKSESIIHLV 133
               ++    +HLV
Sbjct: 63  AQCGVRDGLTVHLV 76

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
           P  I++ V+TP ++     V     ++ +KE ++           L +AG  L+   +LA
Sbjct: 5   PHLIKVTVKTPKDKED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLA 63

Query: 270 SYGIKNNYVLDVL 282
             G+++   + ++
Sbjct: 64  QCGVRDGLTVHLV 76

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 3e-04
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          V  +  I+ LK  I  +     D   L FAG  L+    L   G+R+  T+H
Sbjct: 23 VTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVH 74

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 287 QIFVKTW-GGKTITL-DVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARY 344
            I V+T  G KT T+ DV    T+++++ +++         Q + + GK+L   + L  Y
Sbjct: 2   WIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDY 61

Query: 345 NIQKHSTLHMVLAP 358
           ++  +  + +++ P
Sbjct: 62  DVGLNDIIQLLVRP 75

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 2e-10
 Identities = 15/76 (19%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 62  MKLFVKIPT-NQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMT 120
           M + V+    ++T T+ +     T++ ++  +     ++ +   L Y GK L+ +  T+ 
Sbjct: 1   MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLF 59

Query: 121 SMNIKSESIIHLVFCP 136
             ++    II L+  P
Sbjct: 60  DYDVGLNDIIQLLVRP 75

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          V +   I+ L+  +     +  +   LF+ G +LE G  L DY +  N  + 
Sbjct: 19 VSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQ 70

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 142 IFVKAATGE--IVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           I V+   G       +V     I +++  V ++  V      + Y GK+LE+  TL  YD
Sbjct: 3   IQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYD 62

Query: 200 MKDECLLEM 208
           +    ++++
Sbjct: 63  VGLNDIIQL 71

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 4e-05
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 214 QIFVRTP--IEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASY 271
            I VRT    +     +V     + +++E V  + D+    Q LFY G +LE   TL  Y
Sbjct: 2   WIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDY 61

Query: 272 GIKNNYVLDVLPSP 285
            +  N ++ +L  P
Sbjct: 62  DVGLNDIIQLLVRP 75

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.2 bits (148), Expect = 1e-12
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIV---FAGKRLFENHV 340
           S   I VK  G +     +   +TV D+K  L          Q ++     GK    +  
Sbjct: 6   SGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVK 65

Query: 341 LARYNIQKHSTLHMVLAPSS 360
           L    ++ ++ + M+    S
Sbjct: 66  LGALKLKPNTKIMMMGTRES 85

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQ---FTLVYDGKLLKEDT 116
           S + + VK    +  +V       TV ++K  ++   G+  ++     L   GK   E+ 
Sbjct: 6   SGLPIIVKWGGQEY-SVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPA-END 63

Query: 117 ATMTSMNIKSESIIHLV 133
             + ++ +K  + I ++
Sbjct: 64  VKLGALKLKPNTKIMMM 80

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (91), Expect = 7e-05
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYE---GKKLEDSKTLA 196
           L I VK    E     +     + D+K  + ++ GV      ++     GK  E+   L 
Sbjct: 8   LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLG 67

Query: 197 FYDMKDECLLEMFPS 211
              +K    + M  +
Sbjct: 68  ALKLKPNTKIMMMGT 82

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFY---AGTKLEACKT 267
           S + I V+   +E     +     V D+K+ +  +  +    Q L      G   E    
Sbjct: 6   SGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVK 65

Query: 268 LASYGIKNNYVLDVLPSP 285
           L +  +K N  + ++ + 
Sbjct: 66  LGALKLKPNTKIMMMGTR 83

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (149), Expect = 1e-12
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 287 QIFVKT-WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYN 345
            +F+       TI  D +  +TV ++K  +   L+ P   Q +    + L +   L    
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 346 I-------QKHSTLHMVLAPSSRIIEL 365
                   Q  +T+ +          L
Sbjct: 61  FTSQTARPQAPATVGLAFRADDTFEAL 87

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 1e-09
 Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 64  LFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMN 123
           +F+ I  ++T    +A    TV  +K +++       D+  L  D +LL +D  T+    
Sbjct: 2   VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLL-DDGKTLGECG 60

Query: 124 IKS-------ESIIHLVF 134
             S        + + L F
Sbjct: 61  FTSQTARPQAPATVGLAF 78

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 142 IFVKAATG-EIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDM 200
           +F+        +  + K S  + ++K IV  ++     +  +  + + L+D KTL     
Sbjct: 2   VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGF 61

Query: 201 KDECLLEMFPSSIQIFVRT 219
             +      P+++ +  R 
Sbjct: 62  TSQTARPQAPATVGLAFRA 80

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 2/95 (2%)

Query: 214 QIFVRTPIE-EIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
            +F+        +  + +    V ++K IV  I+      Q L+     L+  KTL   G
Sbjct: 1   DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECG 60

Query: 273 IKNNYVLDVLPSPFQIFVKTWGGKTITLDVQPYNT 307
             +       P+   +  +        L ++P+++
Sbjct: 61  FTSQTARPQAPATVGLAFRA-DDTFEALCIEPFSS 94

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (100), Expect = 6e-06
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNST 51
             K+S  +  LK ++        D   L+     L+ G+ L + G  + + 
Sbjct: 15 TDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTA 66

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 61.5 bits (149), Expect = 1e-12
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 283 PSPFQIFVKT-WGGKTITLDVQPYN-TVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHV 340
           P+  ++       G+ + + VQ  +  V  +K K+  ++Q P + Q +      L +N  
Sbjct: 27  PATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMS 86

Query: 341 LARYNIQKHSTLHMVLA----PSS 360
           LA YN+     L + L     PSS
Sbjct: 87  LAHYNVGAGEILTLSLRERSGPSS 110

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 54  FLHQNLSEMKLFVKIPT---NQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK 110
           FL Q+     + V  P     Q   +        V ++K  I  +  I +++  L     
Sbjct: 20  FLAQHPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAG 79

Query: 111 LLKEDTATMTSMNIKSESIIHLV 133
              +D  ++   N+ +  I+ L 
Sbjct: 80  F-LKDNMSLAHYNVGAGEILTLS 101

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.6 bits (92), Expect = 7e-05
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 210 PSSIQIFVRTPIE-EIVRLEVEVL-IVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKT 267
           P++I++      + + + + V+ L   V  +KE +A  I +    Q L      L+   +
Sbjct: 27  PATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMS 86

Query: 268 LASYGIKNNYVLDVLPSPFQIFVKTWGGKT 297
           LA Y +    +L        + ++   G +
Sbjct: 87  LAHYNVGAGEIL-------TLSLRERSGPS 109

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.3 bits (86), Expect = 6e-04
 Identities = 11/71 (15%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 140 LSIFVK-AATGEIVNLEVK-HSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAF 197
           + +       G+ + + V+  S  +  +K  +   + + A    +  +   L+D+ +LA 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAH 89

Query: 198 YDMKDECLLEM 208
           Y++    +L +
Sbjct: 90  YNVGAGEILTL 100

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 6  SEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          SE + +LK  I  +  I  +   L      L+    L  Y +     L 
Sbjct: 51 SENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILT 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 16/94 (17%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQS---------------I 328
           S   + V    G+ + + V    TV D+K  +   +Q     +                +
Sbjct: 6   SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHL 65

Query: 329 VFAGKRLFENHV-LARYNIQKHSTLHMVLAPSSR 361
             AG++L E+   L  Y I+    +  +     +
Sbjct: 66  TSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (138), Expect = 4e-11
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 16/89 (17%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQ---------------FT 104
           S M + V     +    V  +   TV ++K  IQ    ++ ++               + 
Sbjct: 6   SGMTVRVCKMDGEV-MPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYH 64

Query: 105 LVYDGKLLKEDTATMTSMNIKSESIIHLV 133
           L   G+ L ED   +    I++   +  +
Sbjct: 65  LTSAGEKLTEDRKKLRDYGIRNRDEVSFI 93

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 16/85 (18%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQD---------------L 255
           S + + V     E++ + V     V D+K+ +   + L    +                L
Sbjct: 6   SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHL 65

Query: 256 FYAGTKLE-ACKTLASYGIKNNYVL 279
             AG KL    K L  YGI+N   +
Sbjct: 66  TSAGEKLTEDRKKLRDYGIRNRDEV 90

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 16/85 (18%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSA---------------ADHIMIY 184
           +++ V    GE++ + V  +  + D+K  +   V +                   + +  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 185 EGKKLEDSK-TLAFYDMKDECLLEM 208
            G+KL + +  L  Y +++   +  
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSF 92

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 17/71 (23%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISED---------------ICDLFFAGDRLE--AGRLVD 43
          + V ++  + +LK  I     + ++                  L  AG++L     +L D
Sbjct: 22 VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRD 81

Query: 44 YGIRNNSTLHF 54
          YGIRN   + F
Sbjct: 82 YGIRNRDEVSF 92

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 2e-12
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 284 SPFQIFVKTWGGK--TITLDVQPYNTVQDVKVKLFDKL--QTPLHLQSIVFAGKRLFENH 339
           S   + VK+   +   + L      +V  +K  L      +     Q ++++GK L ++ 
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 340 VLARYNIQK--HSTLHMVLAPSS 360
            L     ++     LH+V    S
Sbjct: 66  CLRDLLPKQEKRHVLHLVCNVKS 88

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 5e-10
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 60  SEMKLFVKIPTNQTATV-VEAMPYHTVQNIKTMIQVKEG--IQSDQFTLVYDGKLLKEDT 116
           S + L VK P  +   + +      +V ++K  +        + +   L+Y GKLL  D 
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLL-LDH 64

Query: 117 ATMTSMNIKSES--IIHLVFCPK 137
             +  +  K E   ++HLV   K
Sbjct: 65  QCLRDLLPKQEKRHVLHLVCNVK 87

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 4e-07
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVL--IVVRDVKEIVANII--DLSLGNQDLFYAGTKLEACK 266
           S + + V++P +    LE+       V  +K  ++ +        +Q L Y+G  L   +
Sbjct: 6   SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ 65

Query: 267 TLASYGIKNN 276
            L     K  
Sbjct: 66  CLRDLLPKQE 75

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 140 LSIFVKAATGEI--VNLEVKHSFAIRDVKAIVGSVVG--VSAADHIMIYEGKKLEDSKTL 195
           +++ VK+       + L     +++  +KA +  V        D  +IY GK L D + L
Sbjct: 8   VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL 67

Query: 196 AFYDMKDE 203
                K E
Sbjct: 68  RDLLPKQE 75

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (145), Expect = 4e-12
 Identities = 10/77 (12%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 286 FQIFV--KTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
            ++F+  +    +   L+ + + T ++++ K+ +      +   IV   K+L     L  
Sbjct: 18  IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEE 77

Query: 344 YNIQKHSTLHMVLAPSS 360
             +  +    ++    S
Sbjct: 78  QGVAHNVKAMVLELKQS 94

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 8e-06
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 207 EMFPSSIQIFV--RTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEA 264
               ++I++F+  R   +    LE  + I  R+++  +A    L      +     +L+ 
Sbjct: 12  TTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQL 71

Query: 265 CKTLASYGIKNNYVLDVLPSP 285
            KTL   G+ +N    VL   
Sbjct: 72  GKTLEEQGVAHNVKAMVLELK 92

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (99), Expect = 8e-06
 Identities = 9/82 (10%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 53  HFLHQNLSEMKLFVKIPTNQTATV-VEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKL 111
           ++    ++ +++F+     +     +E   + T + +++ I    G+Q +   +V + K 
Sbjct: 9   NYRTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKK- 67

Query: 112 LKEDTATMTSMNIKSESIIHLV 133
             +   T+    +       ++
Sbjct: 68  QLQLGKTLEEQGVAHNVKAMVL 89

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGRLV-DYGIRNNSTLHFLH 56
          ++ +     + L++ I    G+ E+   +     +L+ G+ + + G+ +N     L 
Sbjct: 34 LETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE 90

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 9/67 (13%), Positives = 24/67 (35%)

Query: 142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMK 201
           +  +        LE +     R++++ +    G+      ++   K+L+  KTL    + 
Sbjct: 22  LPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVA 81

Query: 202 DECLLEM 208
                 +
Sbjct: 82  HNVKAMV 88

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (145), Expect = 4e-12
 Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 284 SPFQIFV----KTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFE-N 338
           S   I V    +     T +L V P   + + +V    +   P     IV+  + L + +
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 339 HVLARYNIQKHSTLHMVLAPSSR 361
             L  Y ++    + ++   +  
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVG 88

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.5 bits (128), Expect = 8e-10
 Identities = 18/94 (19%), Positives = 43/94 (45%), Gaps = 5/94 (5%)

Query: 60  SEMKLFVKIP----TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKED 115
           S M + V       T  T ++ +  P   + N + + +++ G+ +++  +VY  +LL +D
Sbjct: 6   SGMLITVYCVRRDLTEVTFSL-QVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDD 64

Query: 116 TATMTSMNIKSESIIHLVFCPKEILSIFVKAATG 149
             ++ S  +K   ++ L+      L    +  +G
Sbjct: 65  HCSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSG 98

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 8/72 (11%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGD-RLEAGR-LVDYGIRNNSTLHFLHQN 58
          ++V     + N + +  ++ G+  +   + +      +    L  YG+++   +  L ++
Sbjct: 26 LQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85

Query: 59 LSEMKLFVKIPT 70
             ++   + P+
Sbjct: 86 NVGLRTPGRTPS 97

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 211 SSIQIFV----RTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTK-LEAC 265
           S + I V    R   E    L+V     + + + +      +      + Y      +  
Sbjct: 6   SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDH 65

Query: 266 KTLASYGIKNNYVLDV---LPSPFQIFVKT 292
            +L SYG+K+  ++ +        +   +T
Sbjct: 66  CSLGSYGLKDGDMVVLLQKDNVGLRTPGRT 95

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.6 bits (79), Expect = 0.003
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 141 SIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKK-LEDSKTLAFYD 199
               +  T    +L+V   F + + + +     GV A +  ++Y  +   +D  +L  Y 
Sbjct: 13  YCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYG 72

Query: 200 MKDECLLEMF---PSSIQIFVRTP 220
           +KD  ++ +       ++   RTP
Sbjct: 73  LKDGDMVVLLQKDNVGLRTPGRTP 96

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 5e-12
 Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 287 QIFVKTWGGK-TITLD-VQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARY 344
            I V+T  G+ T T+D +     V++++ K+ +       LQ + + GK++ + H L  Y
Sbjct: 2   WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDY 61

Query: 345 NIQKHSTLHMVL 356
            ++ + T+ +++
Sbjct: 62  EVRLNDTIQLLV 73

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 4e-10
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 62  MKLFVKIPTN-QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMT 120
           M + V+     QT TV        V+ ++  IQ    ++     L Y GK   ED  T+ 
Sbjct: 1   MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGK-QMEDGHTLF 59

Query: 121 SMNIKSESIIHLV 133
              ++    I L+
Sbjct: 60  DYEVRLNDTIQLL 72

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 7e-07
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          + +   ++ L+  I     +   +  LF+ G ++E G  L DY +R N T+ 
Sbjct: 19 LSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQ 70

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 142 IFVKAATG--EIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           I V+   G        +     + +++  +  +  V      + Y GK++ED  TL  Y+
Sbjct: 3   IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYE 62

Query: 200 MKDECLLEM 208
           ++    +++
Sbjct: 63  VRLNDTIQL 71

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 214 QIFVRTPI--EEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASY 271
            I VRT    +      +  L  V +++  +  +  +  G Q LFY G ++E   TL  Y
Sbjct: 2   WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDY 61

Query: 272 GIKNNYVLDVL 282
            ++ N  + +L
Sbjct: 62  EVRLNDTIQLL 72

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.2 bits (143), Expect = 1e-11
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLF--------DKLQTPLHLQSIVFAGKRLFEN 338
            + +    GKT      P ++  D+   ++        ++  +  ++  +++ G+ L  N
Sbjct: 18  NLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN 77

Query: 339 HVLARYNIQKHSTLHMVLAPSSRI 362
             L    +    T  M L     +
Sbjct: 78  VTLGALKLPFGKTTVMHLVARETL 101

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 135 CPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSV--------VGVSAADHIMIYEG 186
            P +++++ +   +G+        + +  D+   V              S     +IY+G
Sbjct: 12  VPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQG 71

Query: 187 KKLEDSKTLAFYDMKDECLLEM 208
           + L  + TL    +       M
Sbjct: 72  RFLHGNVTLGALKLPFGKTTVM 93

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (107), Expect = 9e-07
 Identities = 12/84 (14%), Positives = 33/84 (39%), Gaps = 12/84 (14%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMI--------QVKEGIQSDQFTLVYDGKL 111
             + L + + + +T       P  +  +I   +        + ++    +   L+Y G+ 
Sbjct: 15  DMINLRLILVSGKTKEF-LFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRF 73

Query: 112 LKEDTATMTSMNIK--SESIIHLV 133
           L     T+ ++ +     +++HLV
Sbjct: 74  L-HGNVTLGALKLPFGKTTVMHLV 96

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 10/79 (12%), Positives = 19/79 (24%), Gaps = 8/79 (10%)

Query: 206 LEMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVAN--------IIDLSLGNQDLFY 257
             +    I + +     +             D+ + V +            S     L Y
Sbjct: 10  SHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY 69

Query: 258 AGTKLEACKTLASYGIKNN 276
            G  L    TL +  +   
Sbjct: 70  QGRFLHGNVTLGALKLPFG 88

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 10/65 (15%)

Query: 1  MKVKKSEPIKNLKAMIHV--------KEGISEDICDLFFAGDRLEAGR-LVDYGIRNNST 51
               ++   ++   ++         ++  S +I  L + G  L     L    +    T
Sbjct: 31 FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT 90

Query: 52 LHFLH 56
             +H
Sbjct: 91 TV-MH 94

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
               ++ VKT         +   + V+  K ++   L        ++F GK L +  +L+
Sbjct: 8   SRIIRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILS 66

Query: 343 RYNIQKHSTLHMVL 356
           +  I   ST+H+V+
Sbjct: 67  QRGILDGSTVHVVV 80

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           +++ VK P +     +       V+  K  I       +D+  L++ GK+L++    ++ 
Sbjct: 11  IRVSVKTPQDCHEFFLA--ENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQD-ILSQ 67

Query: 122 MNIKSESIIHLV 133
             I   S +H+V
Sbjct: 68  RGILDGSTVHVV 79

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (94), Expect = 2e-05
 Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 207 EMFPSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACK 266
           E     I++ V+TP +      +     VR  K+ ++  +  +     L + G  L    
Sbjct: 5   EPSSRIIRVSVKTPQDCHE-FFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQD 63

Query: 267 TLASYGIKNNYVLDVL 282
            L+  GI +   + V+
Sbjct: 64  ILSQRGILDGSTVHVV 79

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
            + ++  ++  K  I      + D   L F G  L     L   GI + ST+H
Sbjct: 24 FFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVH 77

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 136 PKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTL 195
              I+ + VK          +  +  +R  K  +   +  +A   ++I+ GK L D   L
Sbjct: 7   SSRIIRVSVKTPQDCH-EFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDIL 65

Query: 196 AFYDMKDECLLEM 208
           +   + D   + +
Sbjct: 66  SQRGILDGSTVHV 78

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (140), Expect = 3e-11
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLA 342
           P   ++ VKT   +     V   ++VQ  K  +  + ++      ++FAGK L +   L 
Sbjct: 30  PKIIKVTVKT-PKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLI 88

Query: 343 RYNIQKHSTLHMVL 356
           ++ I    T+H+V+
Sbjct: 89  QHGIHDGLTVHLVI 102

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 2e-08
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           +K+ VK P  +    V      +VQ  K  I  +   Q+DQ  L++ GK + +D  T+  
Sbjct: 33  IKVTVKTPKEKEEFAVP--ENSSVQQFKEAISKRFKSQTDQLVLIFAGK-ILKDQDTLIQ 89

Query: 122 MNIKSESIIHLV 133
             I     +HLV
Sbjct: 90  HGIHDGLTVHLV 101

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
          V ++  ++  K  I  +     D   L FAG  L+    L+ +GI +  T+H
Sbjct: 48 VPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVH 99

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 135 CPKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKT 194
              +I+ + VK    +     V  + +++  K  +           ++I+ GK L+D  T
Sbjct: 28  AEPKIIKVTVKTPKEKE-EFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDT 86

Query: 195 LAFYDMKDECLLEM 208
           L  + + D   + +
Sbjct: 87  LIQHGIHDGLTVHL 100

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
           P  I++ V+TP E+     V     V+  KE ++           L +AG  L+   TL 
Sbjct: 30  PKIIKVTVKTPKEKEE-FAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLI 88

Query: 270 SYGIKNNYVLDVL 282
            +GI +   + ++
Sbjct: 89  QHGIHDGLTVHLV 101

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.3 bits (138), Expect = 3e-11
 Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLAR 343
           S + + VK    K   +++         K +LF         Q ++  G  L ++     
Sbjct: 6   SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTL-KDDDWGN 64

Query: 344 YNIQKHSTLHMVLAPSS 360
             ++   T+ M+ +  +
Sbjct: 65  IKMKNGMTVLMMGSADA 81

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (114), Expect = 6e-08
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
           S   + VK    +   V E          K  +    G+Q  +  ++  G  LK+D    
Sbjct: 6   SGYSVTVKWGKEKFEGV-ELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDD--W 62

Query: 120 TSMNIKSESIIHLVFCPKEILSIFVKAATG 149
            ++ +K+   + ++     +        +G
Sbjct: 63  GNIKMKNGMTVLMMGSADALPEEPSAKTSG 92

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
            S+ VK    +   +E+         KA + ++ GV  A   ++ +G  L+D        
Sbjct: 8   YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKD-DDWGNIK 66

Query: 200 MKDECLLEMFPS 211
           MK+   + M  S
Sbjct: 67  MKNGMTVLMMGS 78

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 9/53 (16%), Positives = 19/53 (35%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNSTLHFL 55
          +   EP    KA +    G+      +   G  L+     +  ++N  T+  +
Sbjct: 24 LNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDDDWGNIKMKNGMTVLMM 76

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 211 SSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLAS 270
           S   + V+   E+   +E+         K  +  +  +    Q +   G  L+      +
Sbjct: 6   SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKD-DDWGN 64

Query: 271 YGIKNNYVLDVLPSP 285
             +KN   + ++ S 
Sbjct: 65  IKMKNGMTVLMMGSA 79

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.2 bits (135), Expect = 5e-11
 Identities = 13/68 (19%), Positives = 28/68 (41%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           ++ V    GK + +     ++V D K  L  ++ T  +   +   G  L ++  L  Y +
Sbjct: 3   EVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEV 62

Query: 347 QKHSTLHM 354
              + L +
Sbjct: 63  HDQTNLEL 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 14/71 (19%), Positives = 34/71 (47%)

Query: 139 ILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFY 198
           ++ + V    G+ V ++     ++ D K ++   +G      ++   G  L+D  +L  Y
Sbjct: 1   MIEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY 60

Query: 199 DMKDECLLEMF 209
           ++ D+  LE++
Sbjct: 61  EVHDQTNLELY 71

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (84), Expect = 4e-04
 Identities = 14/68 (20%), Positives = 30/68 (44%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           I++ V   + + VR++      V D K++++  I        L   G+ L+   +L  Y 
Sbjct: 2   IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 273 IKNNYVLD 280
           + +   L+
Sbjct: 62  VHDQTNLE 69

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (82), Expect = 8e-04
 Identities = 11/73 (15%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 62  MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTS 121
           +++ V     +   V + +   +V + K ++ ++ G Q ++  L   G +LK+   ++  
Sbjct: 2   IEVVVNDRLGKKVRV-KCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHI-SLED 59

Query: 122 MNIKSESIIHLVF 134
             +  ++ + L +
Sbjct: 60  YEVHDQTNLELYY 72

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.2 bits (130), Expect = 4e-10
 Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 288 IFVK-TWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           + +K  W      + V   +T  ++K K+      P  +Q +++    + E+  L    +
Sbjct: 18  VDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY-KGLVPEDKTLREIKV 76

Query: 347 QKHSTLHMVL----APSS 360
              + + +V      PSS
Sbjct: 77  TSGAKIMVVGSTISGPSS 94

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATM 119
            +  + +KI  N+T   V+     T   +K  I    G+      ++Y  K L  +  T+
Sbjct: 14  GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY--KGLVPEDKTL 71

Query: 120 TSMNIKSESIIHLV 133
             + + S + I +V
Sbjct: 72  REIKVTSGAKIMVV 85

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 9/53 (16%), Positives = 19/53 (35%)

Query: 3  VKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGRLVDYGIRNNSTLHFL 55
          V        LK  IH   G+   +  + + G   E   L +  + + + +  +
Sbjct: 33 VPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPEDKTLREIKVTSGAKIMVV 85

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK------LLK 113
           S + +F+    N   +        T+   K  +++  G  +    L   G        L 
Sbjct: 6   SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLD 65

Query: 114 EDTATMTSMNIKSESIIHLV 133
           ++ A + S  +     IH++
Sbjct: 66  QEDALLGSYPVDDGCRIHVI 85

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.9 bits (106), Expect = 7e-07
 Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 284 SPFQIFVKTWG-GKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKR------LF 336
           S   +F+ +               T+ + K KL   + +P     +   G        L 
Sbjct: 6   SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLD 65

Query: 337 ENH-VLARYNIQKHSTLHMVL----APSS 360
           +   +L  Y +     +H++      PSS
Sbjct: 66  QEDALLGSYPVDDGCRIHVIDHSGSGPSS 94

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (84), Expect = 8e-04
 Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 8/60 (13%)

Query: 2  KVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAG--------RLVDYGIRNNSTLH 53
          +  +S  I   K  + +  G      +L   G   +           L  Y + +   +H
Sbjct: 24 RYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIH 83

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 8/79 (10%)

Query: 138 EILSIFVKA-ATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKK-------L 189
             + +F+ +             S  I + K  +  VVG  A+   +   G          
Sbjct: 6   SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLD 65

Query: 190 EDSKTLAFYDMKDECLLEM 208
           ++   L  Y + D C + +
Sbjct: 66  QEDALLGSYPVDDGCRIHV 84

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (119), Expect = 1e-08
 Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVK--EGI-QSDQFTLVYDGKLLKEDT 116
              K  +++P  +          +++  +K +I  K  E +   +   L+Y G+ L +D 
Sbjct: 17  LAPKSILQLPETELGEYSLGG--YSISFLKQLIAGKLQESVPDPELIDLIYCGRKL-KDD 73

Query: 117 ATMTSMNIKSESIIHLV 133
            T+    I+  S +H++
Sbjct: 74  QTLDFYGIQPGSTVHVL 90

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPL---HLQSIVFAGKRLFENH 339
           P   +  ++    +     +  Y ++  +K  +  KLQ  +    L  +++ G++L ++ 
Sbjct: 16  PLAPKSILQLPETELGEYSLGGY-SISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQ 74

Query: 340 VLARYNIQKHSTLHMVL 356
            L  Y IQ  ST+H++ 
Sbjct: 75  TLDFYGIQPGSTVHVLR 91

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGN---QDLFYAGTKLEACK 266
           P + +  ++ P  E+          +  +K+++A  +  S+ +    DL Y G KL+  +
Sbjct: 16  PLAPKSILQLPETEL-GEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQ 74

Query: 267 TLASYGIKNNYVLDVLPSPFQIFVKTW 293
           TL  YGI+    +        +  K+W
Sbjct: 75  TLDFYGIQPGSTV-------HVLRKSW 94

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 6  SEPIKNLKAMIHVK--EGISE-DICDLFFAGDRLEAGR-LVDYGIRNNSTLH 53
             I  LK +I  K  E + + ++ DL + G +L+  + L  YGI+  ST+H
Sbjct: 37 GYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVH 88

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 49.0 bits (117), Expect = 2e-08
 Identities = 5/70 (7%), Positives = 22/70 (31%), Gaps = 1/70 (1%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
            + V   G   I   ++    ++ +      +    +     ++ G R+  +      ++
Sbjct: 6   NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDM 64

Query: 347 QKHSTLHMVL 356
           + +  +    
Sbjct: 65  EDNDIIEAHR 74

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 47.5 bits (113), Expect = 7e-08
 Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 136 PKEILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTL 195
           P+  +++ V       +  ++K +  +R +        G        +Y+G +++  +T 
Sbjct: 1   PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTP 59

Query: 196 AFYDMKDECLLEMF 209
              DM+D  ++E  
Sbjct: 60  EDLDMEDNDIIEAH 73

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 2  KVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH-FLHQ 57
          K+KK+ P++ L      ++G   D     + G R++A +   D  + +N  +     Q
Sbjct: 19 KIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 76

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 45.2 bits (107), Expect = 4e-07
 Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 66  VKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIK 125
           +K+    +    +      ++ +      ++G + D    +YDG  + +   T   ++++
Sbjct: 7   LKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDME 65

Query: 126 SESIIHLV 133
              II   
Sbjct: 66  DNDIIEAH 73

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 10/72 (13%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 210 PSSIQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLA 269
            + I + V       +  +++    +R + E  A      + +    Y G +++A +T  
Sbjct: 2   ETHINLKVSDG-SSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPE 60

Query: 270 SYGIKNNYVLDV 281
              +++N +++ 
Sbjct: 61  DLDMEDNDIIEA 72

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 14/93 (15%)

Query: 282 LPSPFQIFVKTWGGKTIT-LDVQPYNTVQDVKVKLFDKLQTPLHL-------QSIVFAGK 333
           + +  +I  +   G  I         TV  +K  +  +                ++ AGK
Sbjct: 4   VHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGK 63

Query: 334 RLFENHVLARYNI------QKHSTLHMVLAPSS 360
            L  +  +  Y           +T+H+++    
Sbjct: 64  VLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPV 96

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 12/90 (13%), Positives = 32/90 (35%), Gaps = 14/90 (15%)

Query: 60  SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQ-----VKEGIQS--DQFTLVYDGKLL 112
           +++++  ++               TV  +K  +       KE       +  L+  GK+L
Sbjct: 6   NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVL 65

Query: 113 KEDTATMTSMNIK------SESIIHLVFCP 136
            E++ T+            + + +H++   
Sbjct: 66  -ENSKTVKDYRSPVSNLAGAVTTMHVIIQA 94

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 137 KEILSIFVKAATG-EIVNLEVKHSFAIRDVKAIV-------GSVVGVSAADHIMIYEGKK 188
              L I  +   G +I       +  +  +K  V             +  +  +I  GK 
Sbjct: 5   HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKV 64

Query: 189 LEDSKTLAFYDMKDECLLEMFPSSIQIFVRTPIEE 223
           LE+SKT+  Y      L     +++ + ++ P+ E
Sbjct: 65  LENSKTVKDYRSPVSNLAGA-VTTMHVIIQAPVTE 98

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 213 IQIFVRTP-IEEIVRLEVEVLIVVRDVKEIVANI-------IDLSLGNQDLFYAGTKLEA 264
           ++I  R     +I          V  +KE V +           ++    L  AG  LE 
Sbjct: 8   LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN 67

Query: 265 CKTLASYGIKNNYVLD 280
            KT+  Y    + +  
Sbjct: 68  SKTVKDYRSPVSNLAG 83

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 11/50 (22%), Positives = 26/50 (52%)

Query: 84  TVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV 133
            VQ++  +++   G+      L++ GK LKE    ++++ I+    + L+
Sbjct: 27  VVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 76

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 9e-08
 Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 292 TWGGKTITLDVQPYN-----TVQDVKVKLFDKLQTPLHLQSIVFAGKRLF-ENHVLARYN 345
           T   +   L V          VQD+   + + +  P   Q ++F GK L      L+   
Sbjct: 7   THSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALG 66

Query: 346 IQKHSTLHMVLAPSS 360
           IQ    + ++   +S
Sbjct: 67  IQDGCRVMLIGKKNS 81

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAG--RLVDYGIRNNSTLHFL 55
           +      +++L  ++    G+ +    L F G  L+     L   GI++   +  +
Sbjct: 20 QQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI 76

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (116), Expect = 4e-08
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 295 GKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRL--------FENHVLARYNI 346
            + +   +    TVQ VK  L   L+ P+    + +   ++         +   L  Y++
Sbjct: 22  RQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSV 81

Query: 347 QKHSTLH-MVLAPSS 360
           +    L      PSS
Sbjct: 82  ENGDCLLVRWSGPSS 96

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 60  SEMKLFVKIPTNQTATVVE--AMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLK---- 113
             + L +K        ++E       TVQ +K ++     +   +  L Y+   +     
Sbjct: 8   QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREI 67

Query: 114 ---EDTATMTSMNIKSESIIHLV 133
               D   +   ++++   + + 
Sbjct: 68  ELENDLQPLQFYSVENGDCLLVR 90

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 9/62 (14%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR---------LVDYGIRNNST 51
           ++  S  ++ +K ++     +      L +   ++             L  Y + N   
Sbjct: 27 KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86

Query: 52 LH 53
          L 
Sbjct: 87 LL 88

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 15/82 (18%), Positives = 41/82 (50%), Gaps = 11/82 (13%)

Query: 138 EILSIFVKAA---TGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLE---- 190
           ++L++ +K +     +I+  ++  S  ++ VK ++  ++ V  ++ ++ YE  K+     
Sbjct: 8   QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREI 67

Query: 191 ----DSKTLAFYDMKDECLLEM 208
               D + L FY +++   L +
Sbjct: 68  ELENDLQPLQFYSVENGDCLLV 89

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 12/82 (14%), Positives = 35/82 (42%), Gaps = 11/82 (13%)

Query: 211 SSIQIFVRTPIE---EIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEAC-- 265
             + + ++   +   +I+  ++   + V+ VK +++ ++ + +    L Y  +K+     
Sbjct: 8   QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREI 67

Query: 266 ------KTLASYGIKNNYVLDV 281
                 + L  Y ++N   L V
Sbjct: 68  ELENDLQPLQFYSVENGDCLLV 89

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (113), Expect = 5e-08
 Identities = 10/70 (14%), Positives = 28/70 (40%)

Query: 287 QIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNI 346
           ++ V       I   V+    ++ +K     +   P++    +F G+R+ +NH      +
Sbjct: 4   KLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGM 63

Query: 347 QKHSTLHMVL 356
           ++   + +  
Sbjct: 64  EEEDVIEVYQ 73

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 14/72 (19%), Positives = 35/72 (48%)

Query: 138 EILSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAF 197
           E + + V       ++ +VK +  ++ +K       GV       ++EG+++ D+ T   
Sbjct: 1   EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKE 60

Query: 198 YDMKDECLLEMF 209
             M++E ++E++
Sbjct: 61  LGMEEEDVIEVY 72

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDRLEAGR-LVDYGIRNNSTLH-FLHQ 57
           KVK +  +K LK     ++G+  +     F G R+       + G+     +  +  Q
Sbjct: 17 FKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 75

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 10/69 (14%), Positives = 29/69 (42%)

Query: 213 IQIFVRTPIEEIVRLEVEVLIVVRDVKEIVANIIDLSLGNQDLFYAGTKLEACKTLASYG 272
           I++ V       +  +V++   ++ +KE       + + +    + G ++    T    G
Sbjct: 3   IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 273 IKNNYVLDV 281
           ++   V++V
Sbjct: 63  MEEEDVIEV 71

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 66  VKIPTNQTATVVE--AMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK------LLKEDTA 117
           ++I TN T   +E       ++ ++K  +++  G   D   +            L +   
Sbjct: 7   LEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAK 66

Query: 118 TMTSMNIKSESIIHLV 133
           ++  + ++    IH V
Sbjct: 67  SLKDLGVRDGYRIHAV 82

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.2 bits (99), Expect = 6e-06
 Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 7/68 (10%)

Query: 295 GKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKR-------LFENHVLARYNIQ 347
              +        ++ D+K KL   + T +    I                   L    ++
Sbjct: 15  DFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVR 74

Query: 348 KHSTLHMV 355
               +H V
Sbjct: 75  DGYRIHAV 82

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 8/61 (13%)

Query: 1  MKVKKSEPIKNLKAMIHVKEGISEDICDLFFAGDR-------LEAGR-LVDYGIRNNSTL 52
           K      + +LK  + +  G + D   +              +  + L D G+R+   +
Sbjct: 20 KKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRI 79

Query: 53 H 53
          H
Sbjct: 80 H 80

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 13/70 (18%), Positives = 33/70 (47%)

Query: 140 LSIFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYD 199
           +++ V    G +V  ++K    +  +        G+S       ++G+ + ++ T A  +
Sbjct: 2   INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLE 61

Query: 200 MKDECLLEMF 209
           M+DE  +++F
Sbjct: 62  MEDEDTIDVF 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	426
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.86
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.84
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.84
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.84
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.84
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.82
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.82
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.82
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.82
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.8
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.8
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.79
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.79
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.77
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.77
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.77
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.77
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.76
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.76
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.75
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.74
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.74
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.73
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.73
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.73
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.72
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.72
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.72
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.71
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.71
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.69
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.69
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.68
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.68
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.67
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.67
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.67
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.67
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.67
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.67
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.66
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.64
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.63
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.63
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.62
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.61
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.61
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.58
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.58
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.57
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.56
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.56
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.54
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.54
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.54
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.53
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.51
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.5
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.49
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.41
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.41
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.38
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.34
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.3
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.24
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.23
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.22
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.18
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.09
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.06
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.32
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.21
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.94
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.71
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.19
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	96.06
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.01
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	95.51
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	94.77
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	94.38
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	94.23
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	93.81
d1ef1a3	84	Moesin {Human (Homo sapiens) [TaxId: 9606]}	91.9
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	89.08
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	87.23
d1h4ra3	84	Merlin {Human (Homo sapiens) [TaxId: 9606]}	85.9
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	85.8
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	82.52

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.6e-22  Score=149.16  Aligned_cols=76  Identities=51%  Similarity=0.742  Sum_probs=75.1

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      |+|+|++++|++++++|++++||++||++|+.+.|+|+++|+|+|+|+.|+|+.||++|||++|++|||++|++||
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999998

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=8.2e-22  Score=149.42  Aligned_cols=76  Identities=18%  Similarity=0.353  Sum_probs=74.6

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      .|+|||++.+|++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+.||++|+|++++||||++|+||
T Consensus         2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999999999987

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=3e-21  Score=144.62  Aligned_cols=73  Identities=37%  Similarity=0.576  Sum_probs=71.7

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      |.|+||+++|++++++|+|++||++||++|+++.|+|+++|+|+|+|++|+|+.||++|||++|++|||++|+
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEeeC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999985

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.5e-21  Score=150.12  Aligned_cols=80  Identities=26%  Similarity=0.320  Sum_probs=77.1

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      ...|+|+|++++|++++++|++++||++||++|++++|||+++|+|+|+|++|+|++||++|+|++++||||+.|.++|.
T Consensus         5 s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~gp   84 (87)
T d1wh3a_           5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP   84 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred             CCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCCCC
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999998874

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.3e-21  Score=144.48  Aligned_cols=75  Identities=27%  Similarity=0.335  Sum_probs=73.2

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      .+|+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|+||||++|+
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999985

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.8e-21  Score=145.69  Aligned_cols=76  Identities=24%  Similarity=0.487  Sum_probs=74.2

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      .|+||||+.+|++++ ++|++++||.+||++|++++|+|+++|+|+|+|++|+| +.+|++|+|+++|+||+++|++|
T Consensus         2 ~M~I~Vk~~~g~t~~-l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d-~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFP-VEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPN-HLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSSSSCEE-EEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECT-TCBGGGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCCCCEEE-EEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCC-CCCHHHcCCCCCCEEEEEeccCC
Confidence            699999999999999 99999999999999999999999999999999999999 99999999999999999999886

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.4e-21  Score=144.38  Aligned_cols=76  Identities=42%  Similarity=0.611  Sum_probs=74.6

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      |+|+||+++|++++ ++|++++||.+||++|+++.|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+|++|++||
T Consensus         1 MqI~Vk~l~G~~~~-l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d-~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGKTIT-LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEE-EECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCCEEE-EEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCC-CCCHHHcCCCCCCEEEEEEecCCC
Confidence            89999999999999 99999999999999999999999999999999999999 999999999999999999999987

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.3e-20  Score=145.95  Aligned_cols=79  Identities=19%  Similarity=0.269  Sum_probs=76.2

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      ++.|+|+||+++|++++ ++|++++||.+||++|++++|+|+++|+|+|+|++|+| +.+|++|+|+++++|||+.|.++
T Consensus         5 s~~mqI~Vk~~~g~~~~-l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d-~~tL~~y~I~~~stl~l~~r~~~   82 (87)
T d1wh3a_           5 SSGIQVFVKNPDGGSYA-YAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQD-WLGLGIYGIQDSDTLILSKKKGS   82 (87)
T ss_dssp             SSSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCS-SSBHHHHTCCTTEEEEEEECSCC
T ss_pred             CCcEEEEEECCCCCEEE-EEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCC-CCcHHHcCCCCCCEEEEEecCCC
Confidence            57899999999999999 99999999999999999999999999999999999999 99999999999999999999876


Q ss_pred             e
Q 036691          139 I  139 (426)
Q Consensus       139 g  139 (426)
                      |
T Consensus        83 g   83 (87)
T d1wh3a_          83 G   83 (87)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.4e-20  Score=140.33  Aligned_cols=73  Identities=23%  Similarity=0.463  Sum_probs=70.4

Q ss_pred             cEEEEEecCCc-EEEEE-EcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          286 FQIFVKTWGGK-TITLD-VQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       286 m~i~v~~~~g~-~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      |+|+|++++|+ +++++ +++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|+||||++|+
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEc
Confidence            89999999995 89985 899999999999999999999999999999999999999999999999999999986

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.9e-20  Score=141.37  Aligned_cols=75  Identities=23%  Similarity=0.367  Sum_probs=72.8

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      +.|+|+||+.+|++++ ++|++++||.++|++|++++|+|+++|+|+|+|+.|+| +++|++|||++|++|||++|+
T Consensus         2 ~~~qi~Vk~~~G~~~~-l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d-~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           2 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLED-QLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             CCEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBGGGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEcCCCCEEE-EEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence            5799999999999999 99999999999999999999999999999999999999 999999999999999999875

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=1.5e-20  Score=140.77  Aligned_cols=73  Identities=34%  Similarity=0.498  Sum_probs=71.3

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      |+|+||+++|++++ ++|++++||+++|++|++++|+|+++|+|+|+|++|+| +.+|++|+|++|++|||++|+
T Consensus         1 M~I~Vk~~~G~~~~-l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d-~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIE-IDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLAD-DKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEE-EECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCC-CCcHHHcCCCCCCEEEEEeeC
Confidence            89999999999999 99999999999999999999999999999999999999 999999999999999999885

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.6e-20  Score=140.04  Aligned_cols=76  Identities=20%  Similarity=0.259  Sum_probs=73.4

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      .+++|+||+.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|++||++|||++|+||||+++..
T Consensus         2 ~e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p   77 (80)
T d1ttna1           2 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP   77 (80)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             CeEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999998754

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=136.70  Aligned_cols=73  Identities=23%  Similarity=0.439  Sum_probs=70.2

Q ss_pred             cEEEEEecCC-cEEEE-EEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          286 FQIFVKTWGG-KTITL-DVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       286 m~i~v~~~~g-~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      |+|+|++++| +++++ +|++++||++||++|++++|+|+++|+|+|+|++|+|++||++|||++|++|||++|+
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            8999999999 68888 5999999999999999999999999999999999999999999999999999999885

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.4e-19  Score=136.07  Aligned_cols=73  Identities=21%  Similarity=0.277  Sum_probs=69.5

Q ss_pred             eeEEEEcCCCc-eeEEE-EEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           62 MKLFVKIPTNQ-TATVV-EAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        62 m~i~Vk~~~g~-~~~~~-~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      |+|+||+++|+ +++ + .+++++||++||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|+++++|||++|+
T Consensus         1 M~I~Vktl~Gk~t~~-l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1           1 MWIQVRTMDGRQTHT-VDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMED-GHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             EEEEEEETTSSCEEE-EEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTTTTTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCcEEE-EecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccC-CCcHHHcCCCCCCEEEEEEEc
Confidence            89999999996 787 6 4999999999999999999999999999999999999 999999999999999999885

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.6e-20  Score=137.92  Aligned_cols=72  Identities=24%  Similarity=0.411  Sum_probs=69.5

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      |+|+|++++|++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+++|++|+| +++||||+.|.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecC
Confidence            7899999999999999999999999999999999999999999999999999999999999 58999998875

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.6e-19  Score=133.24  Aligned_cols=74  Identities=20%  Similarity=0.313  Sum_probs=69.4

Q ss_pred             eeEEEEcCCC-ceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           62 MKLFVKIPTN-QTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        62 m~i~Vk~~~g-~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      |+|+||+++| +++++.+|++++||++||++|++++|+|+++|+|+|+|++|+| +.+|++|+|++|++|||++|+
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d-~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLEN-GYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCS-SSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecC-CCCHHHcCCCCCCEEEEEEcc
Confidence            8999999999 5787236999999999999999999999999999999999999 999999999999999999874

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.5e-19  Score=136.38  Aligned_cols=76  Identities=14%  Similarity=0.334  Sum_probs=73.0

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      .+|+|+||+.+|+++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +++|++|+|+++++|||+++.+
T Consensus         2 ~e~qi~Vk~~~G~~~~-l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d-~~tL~~y~I~~~sti~lvi~~p   77 (80)
T d1ttna1           2 YECQLRLRLSTGKDLK-LVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTD-KMKFEELKIPKDYVVQVIVSQP   77 (80)
T ss_dssp             CSEEEEEEETTTEEEE-EEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCT-TSHHHHCCCSSSCEEEEECCCS
T ss_pred             CeEEEEEEcCCCCEEE-EEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCC-CCcHHHcCCCCCCEEEEEecCC
Confidence            4789999999999999 99999999999999999999999999999999999999 9999999999999999988754

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-19  Score=135.12  Aligned_cols=72  Identities=26%  Similarity=0.412  Sum_probs=69.1

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeec
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCP  136 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~  136 (426)
                      |+|+||+++|+++. ++|++++||++||++|++++|+|+++|||+|+|+.|+| +++|++|+| ++++|||+.|.
T Consensus         1 m~I~Vk~~~g~~~~-l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d-~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRT-FIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD-DKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCS-SSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEE-EEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccC-CCCHHHhCC-CCCEEEEEecC
Confidence            79999999999999 99999999999999999999999999999999999999 999999999 58999998774

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=4.6e-19  Score=132.36  Aligned_cols=71  Identities=18%  Similarity=0.254  Sum_probs=69.2

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      |+|+|++.+|++++++|+|++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|+||||..
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTTSBHHHHTCCTTEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecccCcHHHcCCCCCCEEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999964

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.7e-18  Score=136.30  Aligned_cols=77  Identities=25%  Similarity=0.435  Sum_probs=72.6

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhC---CCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCCc
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQ---TPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSRI  362 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg~  362 (426)
                      |+|+|++++|++++++|++++||++||++|+++.|   +|+++|+|+|+|+.|+|+.||++|||++|++|||+++...+.
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~~~~~   80 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV   80 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECCCCCC
Confidence            89999999999999999999999999999999876   899999999999999999999999999999999998765543

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-18  Score=131.02  Aligned_cols=73  Identities=19%  Similarity=0.296  Sum_probs=70.1

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE--cCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF--AGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~--~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      ++|.|++++|++++++|++++||++||++|+.++|+|+++|+|+|  +|+.|+|+.||++|||++|++|||+++.
T Consensus         1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~   75 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK   75 (76)
T ss_dssp             CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEEC
Confidence            478999999999999999999999999999999999999999999  6999999999999999999999999864

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2.5e-18  Score=128.40  Aligned_cols=72  Identities=24%  Similarity=0.409  Sum_probs=68.2

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      +|+|+|++. +++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|||+.+
T Consensus         1 si~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           1 SLNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEEET-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEEeC-CeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEee
Confidence            478999985 577999999999999999999999999999999999999999999999999999999999875

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.5e-18  Score=132.22  Aligned_cols=68  Identities=21%  Similarity=0.386  Sum_probs=66.5

Q ss_pred             cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691          293 WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       293 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      ++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|||++|+||
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999987

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.7e-18  Score=131.76  Aligned_cols=77  Identities=23%  Similarity=0.334  Sum_probs=71.8

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      +..|+|+|++.+ .+++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|+||||++|.+.
T Consensus         5 ~~~i~I~Vkt~~-~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~   81 (84)
T d1yqba1           5 PHLIKVTVKTPK-DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH   81 (84)
T ss_dssp             TTEEEEEEECSS-CEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CCEEEEEEEcCC-CcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCC
Confidence            346999999975 56899999999999999999999999999999999999999999999999999999999998754

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=2e-18  Score=128.85  Aligned_cols=70  Identities=16%  Similarity=0.358  Sum_probs=68.4

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEE
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~  133 (426)
                      |+|+||+..|+++. ++|+|++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|+|.
T Consensus         2 i~i~vk~~~Gk~~~-v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d-~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_           2 IEVVVNDRLGKKVR-VKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKD-HISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             EEEEEEETTTEEEE-EEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECT-TSBHHHHTCCTTEEEEEE
T ss_pred             eEEEEECCCCCEEE-EEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEecc-cCcHHHcCCCCCCEEEEE
Confidence            78999999999999 99999999999999999999999999999999999999 999999999999999984

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3.8e-18  Score=134.45  Aligned_cols=73  Identities=14%  Similarity=0.140  Sum_probs=70.4

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      .++|+|++..|+++.++|+|++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|+||+|..+
T Consensus        28 ~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~dygI~~GstI~L~~~  100 (100)
T d1uh6a_          28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYYQ  100 (100)
T ss_dssp             EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCcCCHHHcCCCCCCEEEEEEC
Confidence            3699999999999999999999999999999999999999999999999999999999999999999999753

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=5.2e-18  Score=126.63  Aligned_cols=72  Identities=29%  Similarity=0.446  Sum_probs=67.6

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      +|+|+||+. ++++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|||+.+
T Consensus         1 si~I~Vk~~-~~~~~-i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           1 SLNIHIKSG-QDKWE-VNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKD-DQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEEET-TEEEE-EEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEEeC-CeEEE-EEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccC-CCcHHHCCCCCCCEEEEEee
Confidence            489999984 56788 99999999999999999999999999999999999999 99999999999999999764

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.9e-18  Score=129.42  Aligned_cols=72  Identities=24%  Similarity=0.368  Sum_probs=69.6

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhC---CCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEe
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQ---TPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVL  356 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~  356 (426)
                      .|+|+|++++|++++++|+|++||++||++|+++.|   +|+++|||+|+|+.|+|+.||++|||+++++|++++
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            689999999999999999999999999999999988   999999999999999999999999999999998875

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.7e-18  Score=127.35  Aligned_cols=72  Identities=24%  Similarity=0.263  Sum_probs=69.2

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEe--CCeEeecccccccccccccCcEEEEEee
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVY--DGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      .+|.||+++|++++ ++|++++||.+||++|+++.|+|+++|+|+|  +|+.|+| +.+|++|||++|++|||+++
T Consensus         1 ~~l~Vk~l~G~~~~-v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D-~~tL~~y~i~~g~~i~lv~~   74 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQ-VSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQD-RVPLASQGLGPGSTVLLVVD   74 (76)
T ss_dssp             CEEEEEESSSCEEE-EECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCS-SSCSGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEE-EEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccC-CCcHHHcCCCCCCEEEEEEE
Confidence            37899999999999 9999999999999999999999999999999  7999999 99999999999999999876

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.72  E-value=8e-18  Score=135.29  Aligned_cols=80  Identities=28%  Similarity=0.328  Sum_probs=71.7

Q ss_pred             CCCcEEEEE--e-cCCcEEEEEEcC-CCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          283 PSPFQIFVK--T-WGGKTITLDVQP-YNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       283 ~~~m~i~v~--~-~~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      +.++.+.|.  + .+|++++++|.| ++||.+||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|||++|+
T Consensus        25 ~g~~ti~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~  104 (111)
T d1we6a_          25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE  104 (111)
T ss_dssp             CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred             CCCEEEEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeC
Confidence            344444443  3 368999999997 899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCc
Q 036691          359 SSRI  362 (426)
Q Consensus       359 ~gg~  362 (426)
                      |||.
T Consensus       105 rGG~  108 (111)
T d1we6a_         105 RSGP  108 (111)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            9994

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=4.3e-18  Score=134.13  Aligned_cols=91  Identities=11%  Similarity=0.178  Sum_probs=78.9

Q ss_pred             ccCCCCCCCeEEEEEecC----CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccc
Q 036691           42 VDYGIRNNSTLHFLHQNL----SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTA  117 (426)
Q Consensus        42 ~~y~i~~~~~l~l~~~~~----~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~  117 (426)
                      ++|+....+.=+++.+..    ..++|+|++..|+++. ++|+|++||++||++|++++|+|+++|+|+|+|+.|+| +.
T Consensus         5 ~~~~~~~ss~~~~~p~~~~~~~~~i~V~V~~~~Gk~~~-v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~   82 (100)
T d1uh6a_           5 SHHHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVR-VKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKD-HV   82 (100)
T ss_dssp             CCCCCCCCCCCSSCCCCCSSCCCEEEEEEECSSSSCEE-EEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCS-SC
T ss_pred             cccccccCCcccccCCCCCCCCceEEEEEECCCCCEEE-EEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccC-cC
Confidence            556666665544443322    3479999999999999 99999999999999999999999999999999999999 99


Q ss_pred             cccccccccCcEEEEEe
Q 036691          118 TMTSMNIKSESIIHLVF  134 (426)
Q Consensus       118 tL~~y~I~~~s~i~l~~  134 (426)
                      +|++|+|++|++|+|..
T Consensus        83 tL~dygI~~GstI~L~~   99 (100)
T d1uh6a_          83 SLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             BHHHHTCCTTEEEEEEC
T ss_pred             CHHHcCCCCCCEEEEEE
Confidence            99999999999999864

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.9e-18  Score=128.82  Aligned_cols=76  Identities=24%  Similarity=0.406  Sum_probs=71.0

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      +..|+|+||+.++ ++. ++|++++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|||++|++|||++|.+
T Consensus         5 ~~~i~I~Vkt~~~-~~~-~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D-~~tL~~y~i~~gsti~lv~r~~   80 (84)
T d1yqba1           5 PHLIKVTVKTPKD-KED-FSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKD-PDSLAQCGVRDGLTVHLVIKRQ   80 (84)
T ss_dssp             TTEEEEEEECSSC-EEE-EEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBHHHHTCCTTCEEEEEECCC
T ss_pred             CCEEEEEEEcCCC-cEE-EEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeeccc-cCcHHHcCCCCCCEEEEEECCC
Confidence            4679999999755 578 99999999999999999999999999999999999999 9999999999999999998865

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.5e-17  Score=130.75  Aligned_cols=74  Identities=22%  Similarity=0.407  Sum_probs=70.3

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhC---CCCCceEEEeCCeEeecccccccccccccCcEEEEEeecc
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG---IQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPK  137 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~  137 (426)
                      |+|+||+++|+++. ++|++++||.+||++|+++.|   +|+++|+|+|+|+.|+| +.+|++|+|+++++|+|+++.+
T Consensus         1 M~I~vk~~~g~~~~-l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d-~~tL~~y~I~~~s~i~lv~~~~   77 (95)
T d1uela_           1 MQVTLKTLQQQTFK-IDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILND-DTALKEYKIDEKNFVVVMVTKP   77 (95)
T ss_dssp             CEEEEEETTCCEEE-EECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCT-TSBGGGGTCCSSSEEEEEESSC
T ss_pred             CEEEEEeCCCCEEE-EEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccC-CCcHHHcCCCCCCEEEEEECCC
Confidence            89999999999999 999999999999999999876   89999999999999999 9999999999999999988644

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.9e-18  Score=127.00  Aligned_cols=73  Identities=22%  Similarity=0.395  Sum_probs=69.4

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhC---CCCCceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEG---IQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF  134 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~  134 (426)
                      .+|+|+||+++|++++ ++|+|++||.+||++|+++.|   +|+++|||+|+|+.|+| +.+|++|+|+++++|++++
T Consensus         1 s~~~i~vk~l~g~~~~-l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D-~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           1 SAVTITLKTLQQQTFK-IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD-DVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCCEEEEETTTEEEE-ECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECS-SSBTTTTCCCTTSCEEEEE
T ss_pred             CcEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccC-CCcHHHcCCCCCCEEEEEE
Confidence            3699999999999999 999999999999999999988   89999999999999999 9999999999999998854

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.7e-17  Score=125.58  Aligned_cols=68  Identities=21%  Similarity=0.339  Sum_probs=65.9

Q ss_pred             CCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           69 PTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        69 ~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      ++|++++ ++|++++||.+||++|++++|+|+++|+|+|+|+.|.| +.+|++|+|++|++|||++|++|
T Consensus        19 L~G~~~~-l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D-~~tL~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          19 LNGQVLV-FTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKD-SNSLAYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             CSSCEEE-EEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECT-TSBHHHHTCCTTEEEEEEESCCC
T ss_pred             cCCeEEE-EEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCC-CCCHHHcCCCCCCEEEEEEecCC
Confidence            5899999 99999999999999999999999999999999999999 99999999999999999999876

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.2e-17  Score=130.00  Aligned_cols=74  Identities=24%  Similarity=0.341  Sum_probs=69.6

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      +..|+|+|++.++ +++++|++++||.+||++|+.++|+|+++|+|+|+|++|+|+.||++|||++|++|||++|
T Consensus        30 ~~~i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          30 PKIIKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CCCEEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             CCeEEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            3469999999764 6899999999999999999999999999999999999999999999999999999999986

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.3e-17  Score=127.64  Aligned_cols=74  Identities=22%  Similarity=0.263  Sum_probs=69.3

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeec
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      ..|+|+|++.+ ..++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|||++|-
T Consensus         9 ~~i~v~Vk~~~-~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r~   82 (83)
T d1wx8a1           9 RIIRVSVKTPQ-DCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS   82 (83)
T ss_dssp             CEEEEEEECSS-SEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred             CeEEEEEEcCC-CcEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEeC
Confidence            46899999975 557999999999999999999999999999999999999999999999999999999998863

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=1.8e-17  Score=133.25  Aligned_cols=78  Identities=14%  Similarity=0.166  Sum_probs=71.2

Q ss_pred             ceeEEEEcC-CCceeEEEEEcC-CCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           61 EMKLFVKIP-TNQTATVVEAMP-YHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        61 ~m~i~Vk~~-~g~~~~~~~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      .++|+|++. +|++++ ++|.+ ++||.+||++|++++|+|+++|+|+|+|+.|+| +.+|++|+|++|++|||++|+||
T Consensus        29 ti~V~v~~~~~G~~i~-l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~ynI~~gsti~L~lr~rG  106 (111)
T d1we6a_          29 TIRVSKPNENDGQFME-ITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKD-NMSLAHYNVGAGEILTLSLRERS  106 (111)
T ss_dssp             EEEECCTTCSSSCCEE-EEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCT-TSBTTTTTCSSSCEEEEECSSCC
T ss_pred             EEEEEcccCCCCeEEE-EEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEccc-cCCHHHcCCCCCCEEEEEeeCCC
Confidence            455555554 599999 99987 999999999999999999999999999999999 99999999999999999999998


Q ss_pred             ee
Q 036691          139 IL  140 (426)
Q Consensus       139 g~  140 (426)
                      |.
T Consensus       107 G~  108 (111)
T d1we6a_         107 GP  108 (111)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=6.3e-17  Score=128.26  Aligned_cols=80  Identities=18%  Similarity=0.216  Sum_probs=73.5

Q ss_pred             CCcEEEE----EecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecC-CCCccccCCCCCCCEEEEEeec
Q 036691          284 SPFQIFV----KTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLF-ENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       284 ~~m~i~v----~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~-d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      ..|.|+|    ++.+|.+++++|++++||++||+.|+.++|+|+++|+|+|+|+.|. |+.||++|||++|++|+|+.|.
T Consensus         6 ~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r~   85 (102)
T d1v5oa_           6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD   85 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred             CCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEECC
Confidence            4688999    7888999999999999999999999999999999999999999995 6689999999999999999887


Q ss_pred             CCCcc
Q 036691          359 SSRII  363 (426)
Q Consensus       359 ~gg~~  363 (426)
                      .++..
T Consensus        86 ~~~~~   90 (102)
T d1v5oa_          86 NVGLR   90 (102)
T ss_dssp             CCCCS
T ss_pred             CCCCC
Confidence            66644

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.6e-17  Score=132.68  Aligned_cols=78  Identities=21%  Similarity=0.279  Sum_probs=73.2

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceE---------------EEEcCeecCCC-CccccCCCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQS---------------IVFAGKRLFEN-HVLARYNIQ  347 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~---------------L~~~gk~L~d~-~tL~~y~I~  347 (426)
                      ..|+|+|++.+|++++++|++++||++||++|++++++|+++|+               |+|+|+.|.|+ .||++|||+
T Consensus         6 s~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~   85 (105)
T d1v2ya_           6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR   85 (105)
T ss_dssp             CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred             CcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCC
Confidence            47999999999999999999999999999999999999999997               99999999765 599999999


Q ss_pred             CCCEEEEEeecCCC
Q 036691          348 KHSTLHMVLAPSSR  361 (426)
Q Consensus       348 ~~~ti~l~~~~~gg  361 (426)
                      +|++|||+.|++..
T Consensus        86 ~g~~l~lv~r~~~~   99 (105)
T d1v2ya_          86 NRDEVSFIKKLGQK   99 (105)
T ss_dssp             SSEEEEEEECSCSC
T ss_pred             CCCEEEEEEecCCC
Confidence            99999999988644

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.67  E-value=1.9e-16  Score=123.82  Aligned_cols=79  Identities=18%  Similarity=0.273  Sum_probs=72.2

Q ss_pred             CCCcEEEEEecCCcEE-EEEEcCCCcHHHHHHHHHhH-----hCCC--CcceEEEEcCeecCCCCccccCCCCCCC----
Q 036691          283 PSPFQIFVKTWGGKTI-TLDVQPYNTVQDVKVKLFDK-----LQTP--LHLQSIVFAGKRLFENHVLARYNIQKHS----  350 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i~~~-----~gip--~~~q~L~~~gk~L~d~~tL~~y~I~~~~----  350 (426)
                      ..+|.|.+++.+|+.+ .+.+++++||.+||++|++.     .|+|  +++|||+|+||.|+|++||++|+|.+|+    
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~   84 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   84 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCC
Confidence            3579999999999977 69999999999999999875     7898  8899999999999999999999999998    


Q ss_pred             --EEEEEeecCCC
Q 036691          351 --TLHMVLAPSSR  361 (426)
Q Consensus       351 --ti~l~~~~~gg  361 (426)
                        |+||++|....
T Consensus        85 ~~tmHlVvrpp~~   97 (101)
T d1se9a_          85 VTTMHVIIQAPVT   97 (101)
T ss_dssp             CEEEEEEECCCSS
T ss_pred             ceEEEEEeCCCCC
Confidence              99999987543

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.67  E-value=1.2e-16  Score=124.99  Aligned_cols=79  Identities=13%  Similarity=0.195  Sum_probs=72.1

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHH-----hCCC--CCceEEEeCCeEeecccccccccccccCc---
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVK-----EGIQ--SDQFTLVYDGKLLKEDTATMTSMNIKSES---  128 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~-----~gip--~~~q~L~~~g~~L~d~~~tL~~y~I~~~s---  128 (426)
                      .+.|.|+||+++|+.+.++.+++++||.+||++|++.     +|+|  +++|||+|+|+.|+| ++||++|+|.+|+   
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D-~~tL~dy~i~~g~~~~   83 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN-SKTVKDYRSPVSNLAG   83 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCT-TSBGGGGSCCTTSCTT
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecC-CCCHHHcCCCCCCcCC
Confidence            3689999999999988559999999999999999875     7898  889999999999999 9999999999997   


Q ss_pred             ---EEEEEeeccc
Q 036691          129 ---IIHLVFCPKE  138 (426)
Q Consensus       129 ---~i~l~~~~~~  138 (426)
                         ++||++|.+.
T Consensus        84 ~~~tmHlVvrpp~   96 (101)
T d1se9a_          84 AVTTMHVIIQAPV   96 (101)
T ss_dssp             CCEEEEEEECCCS
T ss_pred             CceEEEEEeCCCC
Confidence               9999998653

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=3.2e-17  Score=125.41  Aligned_cols=74  Identities=20%  Similarity=0.325  Sum_probs=69.3

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      +..|+|+||++++ .+. ++|++++||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|++|||++|++|||++|
T Consensus         8 ~~~i~v~Vk~~~~-~~~-i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d-~~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1           8 SRIIRVSVKTPQD-CHE-FFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRD-QDILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             SCEEEEEEECSSS-EEE-EEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCT-TSCHHHHTCCTTEEEECCBC
T ss_pred             CCeEEEEEEcCCC-cEE-EEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhcccc-CCcHHHcCCCCCCEEEEEEe
Confidence            4689999999765 467 99999999999999999999999999999999999999 99999999999999999876

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-16  Score=126.97  Aligned_cols=74  Identities=28%  Similarity=0.401  Sum_probs=69.3

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      +..|+|+||+.++ .+. ++|++++||.+||++|++++|+|+++|+|+|+|+.|.| +.+|++|+|++|++|||++|
T Consensus        30 ~~~i~V~Vk~~~~-~~~-i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D-~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          30 PKIIKVTVKTPKE-KEE-FAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKD-QDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CCCEEEEEECSSC-EEE-EEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEEST-TSCGGGTTCSSSEEEEEEEC
T ss_pred             CCeEEEEEECCCc-cEE-EEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccC-CCcHHHcCCCCCCEEEEEEC
Confidence            3579999999765 578 99999999999999999999999999999999999999 99999999999999999875

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=8.3e-17  Score=127.52  Aligned_cols=83  Identities=20%  Similarity=0.325  Sum_probs=74.7

Q ss_pred             CCceeEEE----EcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEe
Q 036691           59 LSEMKLFV----KIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVF  134 (426)
Q Consensus        59 ~~~m~i~V----k~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~  134 (426)
                      ...|.|+|    |..+|.+++ ++|++++||.+||++|+.+.|+|+++|+|+|+|+.|.||..+|++|||++|++|+|+.
T Consensus         5 ~~~m~itV~~~~~~~~~~t~~-l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~   83 (102)
T d1v5oa_           5 SSGMLITVYCVRRDLTEVTFS-LQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ   83 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEE-EEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred             cCCEEEEEEecccCCCCCEEE-EEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEE
Confidence            36799999    888899999 9999999999999999999999999999999999997547899999999999999988


Q ss_pred             eccceeee
Q 036691          135 CPKEILSI  142 (426)
Q Consensus       135 ~~~~g~~i  142 (426)
                      |...+...
T Consensus        84 r~~~~~~~   91 (102)
T d1v5oa_          84 KDNVGLRT   91 (102)
T ss_dssp             CCCCCCSS
T ss_pred             CCCCCCCC
Confidence            86655433

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.9e-17  Score=131.06  Aligned_cols=78  Identities=19%  Similarity=0.186  Sum_probs=73.4

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceE---------------EEeCCeEeecccccccccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFT---------------LVYDGKLLKEDTATMTSMN  123 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~---------------L~~~g~~L~d~~~tL~~y~  123 (426)
                      +..|+|+||+.+|++++ ++|++++||.+||++|++++|+|+++||               |+|+|+.|.|+..+|++|+
T Consensus         5 ss~M~v~Vk~~~G~~~~-v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~g   83 (105)
T d1v2ya_           5 SSGMTVRVCKMDGEVMP-VVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG   83 (105)
T ss_dssp             CCSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred             CCcEEEEEEeCCCCEEE-EEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcC
Confidence            46899999999999999 9999999999999999999999999998               9999999987457999999


Q ss_pred             cccCcEEEEEeecc
Q 036691          124 IKSESIIHLVFCPK  137 (426)
Q Consensus       124 I~~~s~i~l~~~~~  137 (426)
                      |++|++|||+.|++
T Consensus        84 I~~g~~l~lv~r~~   97 (105)
T d1v2ya_          84 IRNRDEVSFIKKLG   97 (105)
T ss_dssp             CCSSEEEEEEECSC
T ss_pred             CCCCCEEEEEEecC
Confidence            99999999998875

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=6.3e-16  Score=124.83  Aligned_cols=77  Identities=16%  Similarity=0.225  Sum_probs=69.1

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHH--------HhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEE
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKL--------FDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i--------~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l  354 (426)
                      ...|+|+|++++|++++++|+|++||.+||++|        +++.|+|+++|||+|.||.|+|+.||++|+|.+|++++|
T Consensus        14 ~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~~l   93 (116)
T d1wgha_          14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM   93 (116)
T ss_dssp             SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred             CCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCCCCHHHcCCCCCCEEEE
Confidence            456899999999999999999999999999999        467899999999999999999999999999999998544


Q ss_pred             EeecC
Q 036691          355 VLAPS  359 (426)
Q Consensus       355 ~~~~~  359 (426)
                      ++.++
T Consensus        94 hlv~r   98 (116)
T d1wgha_          94 HLVAR   98 (116)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            44443

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=6.8e-16  Score=120.40  Aligned_cols=78  Identities=19%  Similarity=0.287  Sum_probs=70.8

Q ss_pred             CCCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecC-CCCccccCCCCCCCEEEEEeecCCC
Q 036691          283 PSPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLF-ENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       283 ~~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~-d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ...|+|+||+++|+.+.++|++++||++||++|+   .+|+++|+|+|+|+.|. |.+||++|+|.+|++|||+++..++
T Consensus         5 ~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~~   81 (95)
T d1wiaa_           5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA   81 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCCC
Confidence            3579999999999999999999999999999986   56889999999999996 6689999999999999999987766


Q ss_pred             cc
Q 036691          362 II  363 (426)
Q Consensus       362 ~~  363 (426)
                      ..
T Consensus        82 ~~   83 (95)
T d1wiaa_          82 AV   83 (95)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=4.8e-16  Score=125.56  Aligned_cols=76  Identities=16%  Similarity=0.293  Sum_probs=70.1

Q ss_pred             cCCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHH--------HHHhCCCCCceEEEeCCeEeecccccccccccccCcE
Q 036691           58 NLSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMI--------QVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESI  129 (426)
Q Consensus        58 ~~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I--------~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~  129 (426)
                      +.+.|+|+|++++|+++. +.|+|++||.+||++|        +++.|+|+++|||+|+|+.|.| +.+|++|+|++|++
T Consensus        13 ~~~~i~i~v~~l~Gk~~~-~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D-~~tL~~~~i~~g~~   90 (116)
T d1wgha_          13 PADMINLRLILVSGKTKE-FLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG-NVTLGALKLPFGKT   90 (116)
T ss_dssp             CSSSEEEEEECSSSCEEE-EEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECS-SCBTTTTTCCSSCE
T ss_pred             CCCeEEEEEEEcCCCEEE-EEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecC-CCCHHHcCCCCCCE
Confidence            567899999999999999 9999999999999999        5778999999999999999999 99999999999987


Q ss_pred             --EEEEee
Q 036691          130 --IHLVFC  135 (426)
Q Consensus       130 --i~l~~~  135 (426)
                        +||+.|
T Consensus        91 ~~lhlv~r   98 (116)
T d1wgha_          91 TVMHLVAR   98 (116)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence              566555

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=8.4e-16  Score=119.88  Aligned_cols=77  Identities=27%  Similarity=0.393  Sum_probs=69.6

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      +..|+|+||+++|+.+. ++|++++||.+||++|+   .+++++|+|+|+|+.|.||.++|++|+|.+|++||++++.++
T Consensus         5 ~s~m~i~vK~l~~~~~~-v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~   80 (95)
T d1wiaa_           5 SSGINVRLKFLNDTEEL-AVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             CCSEEEEEEETTTEEEE-EEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             CCcEEEEEEcCCCCEEE-EEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCC
Confidence            46899999999999999 99999999999999986   468899999999999976478999999999999999887654


Q ss_pred             e
Q 036691          139 I  139 (426)
Q Consensus       139 g  139 (426)
                      +
T Consensus        81 ~   81 (95)
T d1wiaa_          81 A   81 (95)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=6.7e-16  Score=121.12  Aligned_cols=73  Identities=16%  Similarity=0.134  Sum_probs=68.6

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      ..|+|.||+.+++.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|||++|++|+|+..
T Consensus         6 ~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t   78 (96)
T d1wgga_           6 SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             CEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred             CceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEee
Confidence            4689999998888889999999999999999999999999999999999999986 899999999999999754

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.1e-16  Score=121.31  Aligned_cols=75  Identities=12%  Similarity=0.159  Sum_probs=68.5

Q ss_pred             CcEEEE--EecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          285 PFQIFV--KTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       285 ~m~i~v--~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      +|+|++  +...|++++++|.+++||++||++|+++.|+|+++|+|+|+|+.|+|+.||++|||+++++|+++....
T Consensus        17 ti~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~~~   93 (100)
T d1wjua_          17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQ   93 (100)
T ss_dssp             EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCC
T ss_pred             EEEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEcCC
Confidence            466777  567899999999999999999999999999999999999999999999999999999999998775443

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.9e-15  Score=119.09  Aligned_cols=76  Identities=17%  Similarity=0.177  Sum_probs=67.2

Q ss_pred             EEEEecCC-cEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCC-------CCCEEEEEeecC
Q 036691          288 IFVKTWGG-KTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQ-------KHSTLHMVLAPS  359 (426)
Q Consensus       288 i~v~~~~g-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~-------~~~ti~l~~~~~  359 (426)
                      |||+...+ .++.++|++++||.+||++|++++|+|+++|+|+|+|++|+|++||++|||.       ..+++++.++..
T Consensus         2 ifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~~~~   81 (103)
T d2c9wb1           2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRAD   81 (103)
T ss_dssp             EEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEEET
T ss_pred             EEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEEecC
Confidence            56665555 5788999999999999999999999999999999999999999999999994       556999999887


Q ss_pred             CCcc
Q 036691          360 SRII  363 (426)
Q Consensus       360 gg~~  363 (426)
                      |+..
T Consensus        82 ~~~~   85 (103)
T d2c9wb1          82 DTFE   85 (103)
T ss_dssp             TEEC
T ss_pred             CCcc
Confidence            7644

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=9.1e-16  Score=120.09  Aligned_cols=76  Identities=16%  Similarity=0.249  Sum_probs=70.5

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      ..|.|.|+ +++++++++|++++||.+||++|++.+|+|+++|+|+|+|+ |+|+.||++|+|++|++|+|+.+..+|
T Consensus        16 ~~i~v~V~-~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs~~~g   91 (95)
T d1v86a_          16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGSTISG   91 (95)
T ss_dssp             CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCSSCCC
T ss_pred             cEEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEecCCCC
Confidence            46889998 58999999999999999999999999999999999999997 999999999999999999999776655

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.9e-15  Score=115.84  Aligned_cols=78  Identities=21%  Similarity=0.247  Sum_probs=69.2

Q ss_pred             CCcEEEEEecCCc--EEEEEEcCCCcHHHHHHHHHhHhC--CCCcceEEEEcCeecCCCCccccCCCCC--CCEEEEEee
Q 036691          284 SPFQIFVKTWGGK--TITLDVQPYNTVQDVKVKLFDKLQ--TPLHLQSIVFAGKRLFENHVLARYNIQK--HSTLHMVLA  357 (426)
Q Consensus       284 ~~m~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~gk~L~d~~tL~~y~I~~--~~ti~l~~~  357 (426)
                      ..|+|+|++++++  .+++++++++||.+||++|+++.+  +|+++|||+|+|+.|+|+.+|++|+.+.  +.+|||+++
T Consensus         6 ~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~   85 (93)
T d1wgda_           6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             CcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEec
Confidence            4689999999875  488999999999999999999965  9999999999999999999999997654  459999998


Q ss_pred             cCCC
Q 036691          358 PSSR  361 (426)
Q Consensus       358 ~~gg  361 (426)
                      .+.+
T Consensus        86 ~~~~   89 (93)
T d1wgda_          86 VKSG   89 (93)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8755

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.5e-15  Score=116.49  Aligned_cols=77  Identities=22%  Similarity=0.232  Sum_probs=69.9

Q ss_pred             CCcEEEEEecCCcEEEE-EEcCCCcHHHHHHHHHhHhCCCCcceEEE---EcCeecCCCCccccCCCCCCCEEEEEeecC
Q 036691          284 SPFQIFVKTWGGKTITL-DVQPYNTVQDVKVKLFDKLQTPLHLQSIV---FAGKRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      ..|.|+|+. .|+.+.+ ++++++||++||++|+.++|+|+++|+|+   |.|+.|+|+.+|++|+|++|++|||+.+..
T Consensus         6 ~~~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~s~~   84 (90)
T d1v5ta_           6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE   84 (90)
T ss_dssp             CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCS
T ss_pred             CcEEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEeeCC
Confidence            568999996 6777887 79999999999999999999999999999   699999999999999999999999987654


Q ss_pred             CC
Q 036691          360 SR  361 (426)
Q Consensus       360 gg  361 (426)
                      .+
T Consensus        85 ~~   86 (90)
T d1v5ta_          85 SG   86 (90)
T ss_dssp             SS
T ss_pred             CC
Confidence            33

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.6e-15  Score=118.93  Aligned_cols=74  Identities=16%  Similarity=0.157  Sum_probs=69.0

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      ++.|+|.||+.+++.+. ++|++++||.+||++|++++|+|+++|+|+|.|+.|.| + +|++|+|++|++|+|+..
T Consensus         5 s~~~~I~VK~~~~~~~~-v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d-~-tL~~~gi~~g~~i~lv~t   78 (96)
T d1wgga_           5 SSGYSVTVKWGKEKFEG-VELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKD-D-DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             CCEEEEEEEETTEEEEE-EEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCS-S-CCCSCCCCSSCEEECCCC
T ss_pred             CCceEEEEEeCCCCEEE-EEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCC-C-cHHHCCCCCCCEEEEEee
Confidence            46899999998888888 99999999999999999999999999999999999998 5 799999999999999654

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-14  Score=110.44  Aligned_cols=74  Identities=18%  Similarity=0.290  Sum_probs=66.1

Q ss_pred             ceeEEEEcCCCceeEEEEEc-----CCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           61 EMKLFVKIPTNQTATVVEAM-----PYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~-----~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      .|.|.|++ .++.+. ++|.     +++||++||++|++.+|+|+++|+|+|+|+.|.||+.+|++|+|++|++|+|+.|
T Consensus         1 gi~i~V~~-~~~~~~-i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~   78 (81)
T d1wxva1           1 GLTVTVTH-SNEKHD-LHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   78 (81)
T ss_dssp             SEEEEEEC-SSSEEE-EEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CEEEEEEE-CCeeEE-EEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEe
Confidence            37889987 677787 8884     6889999999999999999999999999999976488999999999999999776


Q ss_pred             c
Q 036691          136 P  136 (426)
Q Consensus       136 ~  136 (426)
                      .
T Consensus        79 ~   79 (81)
T d1wxva1          79 K   79 (81)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.8e-15  Score=115.81  Aligned_cols=76  Identities=20%  Similarity=0.281  Sum_probs=65.7

Q ss_pred             eEEEEcCCCc-eeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccc-------cCcEEEEEe
Q 036691           63 KLFVKIPTNQ-TATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIK-------SESIIHLVF  134 (426)
Q Consensus        63 ~i~Vk~~~g~-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~-------~~s~i~l~~  134 (426)
                      +|||+...++ ++. ++|++++||.+||++|++++|+|+++|+|+|+|++|+| ++||++|||.       ..+++++.+
T Consensus         1 qifv~i~~~k~Ti~-l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D-~~TL~dYgI~~~~~~~~~~~~~~l~~   78 (103)
T d2c9wb1           1 DVFLMIRRHKTTIF-TDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDD-GKTLGECGFTSQTARPQAPATVGLAF   78 (103)
T ss_dssp             CEEEEEEEBTEEEE-EEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred             CEEEEEeCCCEEEE-EEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCcccccccCCcEEEEEE
Confidence            4666665554 667 99999999999999999999999999999999999999 9999999994       556888888


Q ss_pred             ecccee
Q 036691          135 CPKEIL  140 (426)
Q Consensus       135 ~~~~g~  140 (426)
                      +..|+.
T Consensus        79 ~~~~~~   84 (103)
T d2c9wb1          79 RADDTF   84 (103)
T ss_dssp             EETTEE
T ss_pred             ecCCCc
Confidence            877654

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.7e-15  Score=113.82  Aligned_cols=78  Identities=24%  Similarity=0.336  Sum_probs=68.2

Q ss_pred             CCceeEEEEcCCCc--eeEEEEEcCCCcHHHHHHHHHHHhC--CCCCceEEEeCCeEeecccccccccccccC--cEEEE
Q 036691           59 LSEMKLFVKIPTNQ--TATVVEAMPYHTVQNIKTMIQVKEG--IQSDQFTLVYDGKLLKEDTATMTSMNIKSE--SIIHL  132 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~--~~~~~~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~d~~~tL~~y~I~~~--s~i~l  132 (426)
                      +..|+|+||+++++  .+. +++++++||.+||++|+++.|  +|+++|||+|+|+.|.| +.+|++|..+.+  .+|||
T Consensus         5 s~~i~l~Ik~~~~~~~~~~-~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D-~~~L~d~~~~~~~~~viHL   82 (93)
T d1wgda_           5 SSGVTLLVKSPNQRHRDLE-LSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLD-HQCLRDLLPKQEKRHVLHL   82 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEE-EECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCS-SSCHHHHSCSSSCSEEEEE
T ss_pred             CCcEEEEEECCCCCceeEE-EEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccC-CCCHHHhCcccCCCCEEEE
Confidence            35799999998765  477 899999999999999999965  99999999999999999 999999976544  59999


Q ss_pred             Eeeccc
Q 036691          133 VFCPKE  138 (426)
Q Consensus       133 ~~~~~~  138 (426)
                      +.+.+.
T Consensus        83 V~~~~~   88 (93)
T d1wgda_          83 VCNVKS   88 (93)
T ss_dssp             ECCCCC
T ss_pred             EecCCC
Confidence            887653

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.9e-15  Score=116.72  Aligned_cols=73  Identities=14%  Similarity=0.225  Sum_probs=67.3

Q ss_pred             ceeEEE--EcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEee
Q 036691           61 EMKLFV--KIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        61 ~m~i~V--k~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      +|+|++  +...|+++. ++|++++||.+||.+|+++.|+|+++|+|+|+|+.|+| +.||++|+|+++++|+++..
T Consensus        17 ti~V~~~~~~~~g~~~~-lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d-~~tL~~~gI~~~s~i~vi~~   91 (100)
T d1wjua_          17 TIEVFLPPRLKKDRKNL-LETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQL-GKTLEEQGVAHNVKAMVLEL   91 (100)
T ss_dssp             EEEEECCTTTCCSSSEE-EEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCT-TSBHHHHTCCSSEEEEEECC
T ss_pred             EEEEEEeeccCCCeEEE-EEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCC-CcCHHHcCCCCCCEEEEEEc
Confidence            567777  567899999 99999999999999999999999999999999999999 99999999999999987543

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.3e-14  Score=109.98  Aligned_cols=73  Identities=21%  Similarity=0.279  Sum_probs=65.6

Q ss_pred             CcEEEEEecCCcEEEEEE-----cCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecC-CCCccccCCCCCCCEEEEEeec
Q 036691          285 PFQIFVKTWGGKTITLDV-----QPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLF-ENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v-----~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~-d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      .|.|.|+. .++.+.+++     ++++||++||++|++.+|+|+++|+|+|+|+.|. |+.||++|||++|++|+|+.+.
T Consensus         1 gi~i~V~~-~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~   79 (81)
T d1wxva1           1 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   79 (81)
T ss_dssp             SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             CEEEEEEE-CCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEec
Confidence            37788865 678899988     4688999999999999999999999999999995 6789999999999999998764

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=5.8e-15  Score=115.44  Aligned_cols=75  Identities=17%  Similarity=0.195  Sum_probs=69.1

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      ..|.|.|++ +++++. ++|++++||.+||++|++.+|+|+++|+|+|+|+ |.| +.+|++|+|+++++|+|+.+..+
T Consensus        16 ~~i~v~V~~-~~k~~~-i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D-~~tL~~~~I~~gs~i~lvgs~~~   90 (95)
T d1v86a_          16 ELVDLKIIW-NKTKHD-VKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPE-DKTLREIKVTSGAKIMVVGSTIS   90 (95)
T ss_dssp             CCEEEEEEE-TTEEEE-EEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCS-SSBHHHHCCCTTEEEEECCSSCC
T ss_pred             cEEEEEEEE-CCEEEE-EEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccC-CCcHHHCCCCCCCEEEEEecCCC
Confidence            578899997 899999 9999999999999999999999999999999997 888 99999999999999999766443

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=9.5e-15  Score=113.17  Aligned_cols=77  Identities=18%  Similarity=0.279  Sum_probs=69.0

Q ss_pred             CCceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE---eCCeEeecccccccccccccCcEEEEEee
Q 036691           59 LSEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV---YDGKLLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        59 ~~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      +..|+|+||+ .|+.+...+|++++||.+||++|++++|+|+++|+|+   |.|+.|+| +.+|++|+|++|++|+|+.+
T Consensus         5 s~~~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D-~~tL~~~~i~~g~~i~lv~s   82 (90)
T d1v5ta_           5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEN-DVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCT-TSBHHHHTCCTTEEEEEECC
T ss_pred             CCcEEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCC-cCcHHHcCCCCCCEEEEEee
Confidence            4689999998 6667772479999999999999999999999999999   69999999 99999999999999999766


Q ss_pred             cc
Q 036691          136 PK  137 (426)
Q Consensus       136 ~~  137 (426)
                      ..
T Consensus        83 ~~   84 (90)
T d1v5ta_          83 RE   84 (90)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.49  E-value=5.8e-14  Score=105.92  Aligned_cols=76  Identities=7%  Similarity=0.175  Sum_probs=71.7

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCCC
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~gg  361 (426)
                      .+.|.|++ +|+.+.+.|.+++++..|++.++++.|+|+++|+|+|+|+.|.++.|+++|+|++|++|+++++++||
T Consensus         4 ~I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           4 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             EEEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             EEEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            36677776 67888999999999999999999999999999999999999999999999999999999999999998

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.41  E-value=3.8e-13  Score=101.28  Aligned_cols=77  Identities=13%  Similarity=0.189  Sum_probs=72.0

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccce
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKEI  139 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~g  139 (426)
                      ..+.|.|++ +|+.+. +.|.+++++..|++.++++.|+|+++++|+|+|+.|.+ +.|+++|++++|++|+++++.+||
T Consensus         3 ~~I~ikv~~-~~~~~~-f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~-~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           3 THINLKVSD-GSSEIF-FKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             SEEEEEEES-SSCEEE-EEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCT-TCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             cEEEEEECC-CCeEEE-EEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCC-CCCHHHCCCCCCCEEEEEEeccCC
Confidence            456778876 688888 99999999999999999999999999999999999999 999999999999999999999887

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=3.1e-13  Score=105.28  Aligned_cols=78  Identities=17%  Similarity=0.183  Sum_probs=69.9

Q ss_pred             CCcEEEEEec-CCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCe-------ecCCCCccccCCCCCCCEEEEE
Q 036691          284 SPFQIFVKTW-GGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGK-------RLFENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       284 ~~m~i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk-------~L~d~~tL~~y~I~~~~ti~l~  355 (426)
                      ..|.|+|++. ++..++.+++++.||.+||++|+..+|+|+++|+|+|.|+       .++|+.+|++|+|.+|++|||+
T Consensus         6 s~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlv   85 (95)
T d1v6ea_           6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI   85 (95)
T ss_dssp             CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred             CcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEE
Confidence            4578999884 6667889999999999999999999999999999999887       5789999999999999999999


Q ss_pred             eecCCC
Q 036691          356 LAPSSR  361 (426)
Q Consensus       356 ~~~~gg  361 (426)
                      -+...+
T Consensus        86 d~~p~~   91 (95)
T d1v6ea_          86 DHSGSG   91 (95)
T ss_dssp             CCSCCS
T ss_pred             eCCCCC
Confidence            876554

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.5e-13  Score=104.48  Aligned_cols=84  Identities=19%  Similarity=0.277  Sum_probs=66.1

Q ss_pred             CCeEEEEEecCCc---eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHh--CCC-CCceEEEeCCeEeeccccccccc
Q 036691           49 NSTLHFLHQNLSE---MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKE--GIQ-SDQFTLVYDGKLLKEDTATMTSM  122 (426)
Q Consensus        49 ~~~l~l~~~~~~~---m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~--gip-~~~q~L~~~g~~L~d~~~tL~~y  122 (426)
                      -|++|+.++..+.   -...++.++.+. . ..++.+.||.+||++|+++.  ++| |++|+|+|+|++|+| +.+|++|
T Consensus         3 ~s~~~~~~~l~~~p~~pk~~i~~p~~~~-~-~~~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D-~~tL~~y   79 (94)
T d1x1ma1           3 LSDWHLAVKLADQPLAPKSILQLPETEL-G-EYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKD-DQTLDFY   79 (94)
T ss_dssp             CCSCCEEEEETTCTTSCCEEECCCCCSS-C-SSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCT-TCBHHHH
T ss_pred             cccceEEEEEccCCCCCcceEECCCCcc-C-ccCCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECC-CccHHHc
Confidence            4677888776543   355666654322 2 23456889999999999885  454 699999999999999 9999999


Q ss_pred             ccccCcEEEEEee
Q 036691          123 NIKSESIIHLVFC  135 (426)
Q Consensus       123 ~I~~~s~i~l~~~  135 (426)
                      +|++|++|||+.|
T Consensus        80 ~I~~gstihLV~r   92 (94)
T d1x1ma1          80 GIQPGSTVHVLRK   92 (94)
T ss_dssp             TCCTTCEEEEEES
T ss_pred             CCCCCCEEEEEEe
Confidence            9999999999876

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=7.7e-13  Score=102.97  Aligned_cols=77  Identities=17%  Similarity=0.178  Sum_probs=67.7

Q ss_pred             CCceeEEEEcC-CCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe-------EeecccccccccccccCcEE
Q 036691           59 LSEMKLFVKIP-TNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK-------LLKEDTATMTSMNIKSESII  130 (426)
Q Consensus        59 ~~~m~i~Vk~~-~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~-------~L~d~~~tL~~y~I~~~s~i  130 (426)
                      ++.|.|+|++. ++.... ..++++.||.+||++|+..+|+|+++|+|+|.|+       .++| +.+|++|+|.+|++|
T Consensus         5 ss~v~v~I~s~~~~~~~E-~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d-~~~L~~y~i~dg~~i   82 (95)
T d1v6ea_           5 SSGVMVFISSSLNSFRSE-KRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE-DALLGSYPVDDGCRI   82 (95)
T ss_dssp             CCCEEEEEEETTSSSCEE-EEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCS-SSBTTSSSCCTTCEE
T ss_pred             CCcEEEEEEECCCCcEEE-EEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCC-cCCHHHCCCCCCCEE
Confidence            35788999984 566677 8999999999999999999999999999999887       3555 999999999999999


Q ss_pred             EEEeecc
Q 036691          131 HLVFCPK  137 (426)
Q Consensus       131 ~l~~~~~  137 (426)
                      |++.+.+
T Consensus        83 hlvd~~p   89 (95)
T d1v6ea_          83 HVIDHSG   89 (95)
T ss_dssp             EEBCCSC
T ss_pred             EEEeCCC
Confidence            9977654

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.4e-12  Score=95.44  Aligned_cols=76  Identities=13%  Similarity=0.276  Sum_probs=72.8

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEeecCC
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLAPSS  360 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~~~g  360 (426)
                      .+.|.|++.+|+.+.+.|.+++++..|++..+++.|+|+.+++|+|+|+.|.++.|++++++++|++|+++.+..|
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~G   77 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG   77 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999999998765

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=9.2e-12  Score=97.25  Aligned_cols=70  Identities=19%  Similarity=0.199  Sum_probs=61.4

Q ss_pred             cEEEEEe---cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCee-------cC-CCCccccCCCCCCCEEEE
Q 036691          286 FQIFVKT---WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKR-------LF-ENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       286 m~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~-------L~-d~~tL~~y~I~~~~ti~l  354 (426)
                      ++|.|+.   .+++.+++++.++.||.+||.+|+..+|+|+++|+|+|.|+.       |+ |+++|.+|||++|++|++
T Consensus        10 iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V   89 (97)
T d1wjna_          10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV   89 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred             EEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEE
Confidence            4556654   457889999999999999999999999999999999999974       43 789999999999999987


Q ss_pred             E
Q 036691          355 V  355 (426)
Q Consensus       355 ~  355 (426)
                      .
T Consensus        90 ~   90 (97)
T d1wjna_          90 R   90 (97)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=5.4e-12  Score=96.91  Aligned_cols=55  Identities=25%  Similarity=0.403  Sum_probs=49.9

Q ss_pred             cCCCcHHHHHHHHHhHh--CCC-CcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          303 QPYNTVQDVKVKLFDKL--QTP-LHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       303 ~~~~tV~~lK~~i~~~~--gip-~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      ..+.||.+||+.|+++.  ++| +++|+|+|+|++|+|+.||++|||++|+||||+.|
T Consensus        35 ~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~~tL~~y~I~~gstihLV~r   92 (94)
T d1x1ma1          35 LGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRK   92 (94)
T ss_dssp             CCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEES
T ss_pred             CCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCCccHHHcCCCCCCEEEEEEe
Confidence            34779999999999885  455 69999999999999999999999999999999987

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=1.1e-11  Score=96.83  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             eeEEEEc---CCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe-------EeecccccccccccccCcEEE
Q 036691           62 MKLFVKI---PTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK-------LLKEDTATMTSMNIKSESIIH  131 (426)
Q Consensus        62 m~i~Vk~---~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~-------~L~d~~~tL~~y~I~~~s~i~  131 (426)
                      +.|.|+.   .+++.+. +.+++++||.+||.+|++.+|+|++.|+|+|.|+       +|++|+++|.+|+|++|++|+
T Consensus        10 iti~i~~~~~~~~~~~~-~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~   88 (97)
T d1wjna_          10 LTLKIKCSNQPERQILE-KQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL   88 (97)
T ss_dssp             EEEEEEESSCSSSCCEE-EEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred             EEEEEEeCCCCCCceEE-EEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEE
Confidence            4555553   3578888 9999999999999999999999999999999887       477668999999999999999


Q ss_pred             EE
Q 036691          132 LV  133 (426)
Q Consensus       132 l~  133 (426)
                      +.
T Consensus        89 V~   90 (97)
T d1wjna_          89 VR   90 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3.3e-11  Score=89.96  Aligned_cols=76  Identities=12%  Similarity=0.228  Sum_probs=71.8

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEEEeeccc
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHLVFCPKE  138 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l~~~~~~  138 (426)
                      .|.|.|++.+|+.+. +.|.+++++..|+...+++.|+|+++++|+|+|+.|.+ +.|++++++++|++|+++.+..|
T Consensus         2 ~I~ikv~~~dg~~v~-f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~-~~T~~~l~~edgD~Idv~~~q~G   77 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIH-FKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIAD-NHTPKELGMEEEDVIEVYQEQTG   77 (77)
T ss_dssp             EEEEEEECTTCCEEE-EEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCHHHHTCCTTEEEEEEECCCC
T ss_pred             EEEEEEECCCCCEEE-EEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCC-CCCHHHcCCCCCCEEEEEEecCC
Confidence            578999999999999 99999999999999999999999999999999999999 99999999999999999877543

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.09  E-value=2.2e-10  Score=87.91  Aligned_cols=71  Identities=14%  Similarity=0.039  Sum_probs=60.2

Q ss_pred             EEEEEe-cCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCe-------ecCCCCccccCCCCCCCEEEEEee
Q 036691          287 QIFVKT-WGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGK-------RLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       287 ~i~v~~-~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk-------~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      .+.|.+ .++..+...++++.||.+||++|+..+|+|++.|+|+|.|+       ..+|+++|++|||.+|++||++=+
T Consensus         6 ~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~   84 (90)
T d1t0ya_           6 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   84 (90)
T ss_dssp             EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeC
Confidence            455554 34455678899999999999999999999999999999887       457889999999999999999643

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.06  E-value=3.2e-10  Score=87.01  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=59.5

Q ss_pred             eEEEEc-CCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCe------EeecccccccccccccCcEEEEEee
Q 036691           63 KLFVKI-PTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGK------LLKEDTATMTSMNIKSESIIHLVFC  135 (426)
Q Consensus        63 ~i~Vk~-~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~------~L~d~~~tL~~y~I~~~s~i~l~~~  135 (426)
                      .+.|.+ .++.... ..++++.||.+||++|+...|+|++.|+|+|.|+      .|.|++++|.+|||.+|++||++-+
T Consensus         6 ~l~it~~~t~~~~E-~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~   84 (90)
T d1t0ya_           6 DLEITTNATDFPME-KKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   84 (90)
T ss_dssp             EEEEEESSCCSCEE-EEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEECCCccEEE-EecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeC
Confidence            444544 2344456 7789999999999999999999999999999887      3665599999999999999999543

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.9e-07  Score=66.24  Aligned_cols=70  Identities=10%  Similarity=0.236  Sum_probs=66.5

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEE
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~  355 (426)
                      +.|.|+..+|+.+.+.|.++++...|...-+++.|+++...+++|+|..+.++.|.+++++++|++|.+.
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            5688899999999999999999999999999999999999999999999999999999999999999763

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.32  E-value=3.1e-07  Score=68.17  Aligned_cols=69  Identities=23%  Similarity=0.217  Sum_probs=56.8

Q ss_pred             EEEEcCCCceeEEEEEcC-CCcHHHHHHHHHHHhCCCCCceEEEe--------------CCeEeecccccccccccccCc
Q 036691           64 LFVKIPTNQTATVVEAMP-YHTVQNIKTMIQVKEGIQSDQFTLVY--------------DGKLLKEDTATMTSMNIKSES  128 (426)
Q Consensus        64 i~Vk~~~g~~~~~~~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~--------------~g~~L~d~~~tL~~y~I~~~s  128 (426)
                      |.|++.+| +.. ++|+. +.||.+||.+|++..++|.+.|.|..              +-..|.||..+|+++||.+|+
T Consensus         3 iRiRsrdG-~eR-v~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGs   80 (94)
T d1wf9a1           3 LRVRSRDG-LER-VSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGS   80 (94)
T ss_dssp             EEEECSSC-EEE-EEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTC
T ss_pred             EEEEecCC-ceE-EEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCce
Confidence            56788777 455 89964 77999999999999999999999943              233577767889999999999


Q ss_pred             EEEEEe
Q 036691          129 IIHLVF  134 (426)
Q Consensus       129 ~i~l~~  134 (426)
                      .++|..
T Consensus        81 ivyL~y   86 (94)
T d1wf9a1          81 MVYLAY   86 (94)
T ss_dssp             EEECCC
T ss_pred             EEEEEe
Confidence            999843

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3.4e-06  Score=61.05  Aligned_cols=69  Identities=16%  Similarity=0.275  Sum_probs=65.2

Q ss_pred             eeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEEeCCeEeecccccccccccccCcEEEE
Q 036691           62 MKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLVYDGKLLKEDTATMTSMNIKSESIIHL  132 (426)
Q Consensus        62 m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~~tL~~y~I~~~s~i~l  132 (426)
                      +.|.|+..+|+.+. +.|.++++...|...-+++.|++++..+++|.|+.+.. +.|.+++++++|++|.+
T Consensus         2 I~lkv~~~~g~~v~-f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~-~~Tp~~l~med~D~Idv   70 (72)
T d1wm3a_           2 INLKVAGQDGSVVQ-FKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDV   70 (72)
T ss_dssp             EEEEEECTTSCEEE-EEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCT-TCCTTTTTCCTTEEEEE
T ss_pred             EEEEEECCCCCEEE-EEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCC-CCCHHHcCCCCCCEEEE
Confidence            56788888999999 99999999999999999999999999999999999998 89999999999999986

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.21  E-value=1e-06  Score=65.33  Aligned_cols=68  Identities=24%  Similarity=0.333  Sum_probs=54.5

Q ss_pred             EEEEecCCcEEEEEEc-CCCcHHHHHHHHHhHhCCCCcceEEEEc--------------CeecCC-CCccccCCCCCCCE
Q 036691          288 IFVKTWGGKTITLDVQ-PYNTVQDVKVKLFDKLQTPLHLQSIVFA--------------GKRLFE-NHVLARYNIQKHST  351 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~--------------gk~L~d-~~tL~~y~I~~~~t  351 (426)
                      |.|++.+| +..++|+ ++.||.+||.+|++..++|++.|.|..+              -..|.| +.+|+++||.+|+.
T Consensus         3 iRiRsrdG-~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRDG-LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSSC-EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecCC-ceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            56777764 4667885 4679999999999999999999999543              334554 56799999999999


Q ss_pred             EEEEe
Q 036691          352 LHMVL  356 (426)
Q Consensus       352 i~l~~  356 (426)
                      |||..
T Consensus        82 vyL~y   86 (94)
T d1wf9a1          82 VYLAY   86 (94)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            99864

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=1.8e-05  Score=56.74  Aligned_cols=70  Identities=17%  Similarity=0.106  Sum_probs=66.5

Q ss_pred             EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEcCeecCCCCccccCCCCCCCEEEEEee
Q 036691          288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFAGKRLFENHVLARYNIQKHSTLHMVLA  357 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~gk~L~d~~tL~~y~I~~~~ti~l~~~  357 (426)
                      +.|-+.+|+..++.|.|++|+.++-+..+.++|+.+++..|.|+++.|+-+.++.-.|+.+|+.+.|+-.
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~~   72 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV   72 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEEc
Confidence            6677889999999999999999999999999999999999999999999999999999999999999753

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=6.3e-05  Score=53.85  Aligned_cols=69  Identities=19%  Similarity=0.208  Sum_probs=65.7

Q ss_pred             eEeecccCcEEEEeccCCCcHHHHHHHHhhhhCCCCCcEEEEECCeeccCCCCcccccCCCcceeeecc
Q 036691          142 IFVKAATGEIVNLEVKHSFAIRDVKAIVGSVVGVSAADHIMIYEGKKLEDSKTLAFYDMKDECLLEMFP  210 (426)
Q Consensus       142 i~Vk~~~gk~~~i~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~y~I~~~s~i~l~~  210 (426)
                      +.|-.++|+..++.+.++.|+.++-+...+++|+.++++.|.|+++.++-+..+...++.+|+.++|++
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCccceeeecCCCCCCEEEEEE
Confidence            566788999999999999999999999999999999999999999999999999999999999999973

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.19  E-value=0.012  Score=43.40  Aligned_cols=66  Identities=15%  Similarity=0.207  Sum_probs=55.1

Q ss_pred             CCcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhH-hCCCCcceEEEEc--CeecC-CCCccccCCCCCC
Q 036691          284 SPFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDK-LQTPLHLQSIVFA--GKRLF-ENHVLARYNIQKH  349 (426)
Q Consensus       284 ~~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~-~gip~~~q~L~~~--gk~L~-d~~tL~~y~I~~~  349 (426)
                      +.-.|.|+.++|..+...+.+++||++|.+-+... .+.+.....|+.+  .+.|. ++.||.++|+.+.
T Consensus        13 p~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s   82 (89)
T d1i42a_          13 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNA   82 (89)
T ss_dssp             CCEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCS
T ss_pred             CcEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCc
Confidence            34578899999999999999999999999999876 3677777888765  57785 4789999999864

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.016  Score=41.89  Aligned_cols=68  Identities=15%  Similarity=0.100  Sum_probs=58.2

Q ss_pred             cEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE--cCeecC---CCCccccCCCCCCCEEEE
Q 036691          286 FQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF--AGKRLF---ENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       286 m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~--~gk~L~---d~~tL~~y~I~~~~ti~l  354 (426)
                      ..|.|+.++|+.+.-.+.+++||.+|.+-|.. .+.+.....|+-  -.+.+.   .+.||.+.|+-+.++|++
T Consensus         6 ~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~-~~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~v   78 (82)
T d1h8ca_           6 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL   78 (82)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHH-HTCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHh-cCCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEE
Confidence            45899999999999999999999999999987 477788888754  667773   467999999999999876

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.01  E-value=0.016  Score=42.64  Aligned_cols=67  Identities=13%  Similarity=0.254  Sum_probs=56.0

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHh-CCCCCceEEEe--CCeEeecccccccccccccCc
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKE-GIQSDQFTLVY--DGKLLKEDTATMTSMNIKSES  128 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~-gip~~~q~L~~--~g~~L~d~~~tL~~y~I~~~s  128 (426)
                      ...|.||.++|..+. ....+++||.+|..-+.... +.+.....|+.  -.+.|.|++.||.+.|+.+..
T Consensus        14 ~t~I~iRlPdG~~~~-~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s~   83 (89)
T d1i42a_          14 TTNIQIRLADGGRLV-QKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAV   83 (89)
T ss_dssp             CEEEEEEETTTCCEE-EEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCSE
T ss_pred             cEEEEEEcCCCCEEE-EEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCce
Confidence            457889999999998 99999999999999998753 56667788875  477898879999999998643

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.035  Score=40.02  Aligned_cols=71  Identities=13%  Similarity=0.281  Sum_probs=59.7

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee--cccccccccccccCcEEEEE
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK--EDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~~tL~~y~I~~~s~i~l~  133 (426)
                      ..+|.||.++|+.+. -...+++|+.+|..-|... +.++....|+  |-.+.+.  |++.||.+.|+.+.++|++.
T Consensus         5 ~~~i~iRlPdG~~~~-~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq   79 (82)
T d1h8ca_           5 VSKLRIRTPSGEFLE-RRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   79 (82)
T ss_dssp             CEEEEEECTTSCEEE-EEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEE
T ss_pred             cEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEE
Confidence            456889999999998 8999999999999999874 7777888887  5777773  43789999999999998864

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.77  E-value=0.054  Score=40.22  Aligned_cols=73  Identities=10%  Similarity=0.228  Sum_probs=58.0

Q ss_pred             CceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee-cccccccccccccCcEEEEEe
Q 036691           60 SEMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK-EDTATMTSMNIKSESIIHLVF  134 (426)
Q Consensus        60 ~~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~-d~~~tL~~y~I~~~s~i~l~~  134 (426)
                      +...|.||.++|+.+. -...+++||.+|..-+... +.....-.|+  |-.+.+. |.+.||.+.|+.+..++++.-
T Consensus        15 ~~~~i~iRlPdG~r~~-r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~   90 (96)
T d2cr5a1          15 EVVTVALRCPNGRVLR-RRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   90 (96)
T ss_dssp             SEEEEEEECTTSCEEE-EEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             CeEEEEEECCCCCEEE-EEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEec
Confidence            4678899999999988 8889999999999999765 4455666776  4446664 447899999999999888743

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.38  E-value=0.045  Score=40.68  Aligned_cols=70  Identities=10%  Similarity=0.020  Sum_probs=56.4

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEEc--CeecC--CCCccccCCCCCCCEEEEE
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVFA--GKRLF--ENHVLARYNIQKHSTLHMV  355 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~--gk~L~--d~~tL~~y~I~~~~ti~l~  355 (426)
                      ...|.||..+|+.+.-.+.+++||.+|..-+... +......+|+..  .+.+.  .+.||.++|+.+.++|++-
T Consensus        16 ~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~   89 (96)
T d2cr5a1          16 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE   89 (96)
T ss_dssp             EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEe
Confidence            3678999999999999999999999999999765 445566777543  36663  3689999999999888663

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.042  Score=43.00  Aligned_cols=69  Identities=12%  Similarity=0.123  Sum_probs=56.8

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE--cCeecC---CCCccccCCCCCCCEEEE
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF--AGKRLF---ENHVLARYNIQKHSTLHM  354 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~--~gk~L~---d~~tL~~y~I~~~~ti~l  354 (426)
                      .-.|.||.++|+.+.-.+..++||.+|.+-+... +.+.....|+.  --+.|.   .+.||.+.|+-+..+|++
T Consensus        43 ~~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~v  116 (124)
T d1wj4a_          43 KAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV  116 (124)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEE
Confidence            3578999999999999999999999999999875 45666777743  457773   468999999999988865

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.083  Score=41.20  Aligned_cols=71  Identities=13%  Similarity=0.311  Sum_probs=58.5

Q ss_pred             ceeEEEEcCCCceeEEEEEcCCCcHHHHHHHHHHHhCCCCCceEEE--eCCeEee--cccccccccccccCcEEEEE
Q 036691           61 EMKLFVKIPTNQTATVVEAMPYHTVQNIKTMIQVKEGIQSDQFTLV--YDGKLLK--EDTATMTSMNIKSESIIHLV  133 (426)
Q Consensus        61 ~m~i~Vk~~~g~~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~~tL~~y~I~~~s~i~l~  133 (426)
                      ..+|-||.++|+.+. .....++||.+|...|... +.+...-.|+  |--+.|.  |...||.+.|+.+.++|++.
T Consensus        43 ~~~l~iRlPdG~r~~-r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~ve  117 (124)
T d1wj4a_          43 KAQLMLRYPDGKREQ-ITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             EEEEEEECTTSCEEE-EEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             ceEEEEECCCCCEEE-EEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEE
Confidence            568899999999998 8999999999999999875 4566677776  5667774  44789999999999998763

>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Moesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.90  E-value=0.48  Score=33.91  Aligned_cols=74  Identities=14%  Similarity=0.176  Sum_probs=58.3

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcce-EEEEcC-----eecCCCCccccCCCCCCCEEEEEeec
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQ-SIVFAG-----KRLFENHVLARYNIQKHSTLHMVLAP  358 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~~g-----k~L~d~~tL~~y~I~~~~ti~l~~~~  358 (426)
                      +|++.|.++++ ++++.+++..+..+|-..+++..|+...+. =|.|-+     .-|+.++.|..+.++.+....+.+++
T Consensus         1 t~~v~V~~LD~-~~~~~v~~~a~G~~l~~~Vc~~l~L~E~dYFGL~y~d~~~~~~WLd~~k~l~kq~~~~~~~~~l~F~V   79 (84)
T d1ef1a3           1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA   79 (84)
T ss_dssp             CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred             CEEEEEEEcCC-EEEEEEcCCChHHHHHHHHHHHcCCcccccceEEEECCCCCeEeccCCCchhhhccCCCCCEEEEEEE
Confidence            47899999997 589999999999999999999999886654 344432     24788899999877777766666654


Q ss_pred             C
Q 036691          359 S  359 (426)
Q Consensus       359 ~  359 (426)
                      +
T Consensus        80 K   80 (84)
T d1ef1a3          80 K   80 (84)
T ss_dssp             S
T ss_pred             E
Confidence            3

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.08  E-value=1.7  Score=30.74  Aligned_cols=68  Identities=10%  Similarity=0.131  Sum_probs=48.5

Q ss_pred             CcEEEEEecC------C-cEEEEEEcCCCcHHHHHHHHHhHhCC-----------CCcceEEEEcCeecCCCCccccCCC
Q 036691          285 PFQIFVKTWG------G-KTITLDVQPYNTVQDVKVKLFDKLQT-----------PLHLQSIVFAGKRLFENHVLARYNI  346 (426)
Q Consensus       285 ~m~i~v~~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~gi-----------p~~~q~L~~~gk~L~d~~tL~~y~I  346 (426)
                      +|.|.|+.+.      | ....+++....||.+|.+.+.++++-           .....++.-+|+...+     ++-+
T Consensus         1 smkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~-----d~~L   75 (88)
T d1vjka_           1 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEEL   75 (88)
T ss_dssp             CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBC
T ss_pred             CeEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCC-----CcCc
Confidence            4888888873      3 57789999999999999999887531           1223455566666554     4568


Q ss_pred             CCCCEEEEEee
Q 036691          347 QKHSTLHMVLA  357 (426)
Q Consensus       347 ~~~~ti~l~~~  357 (426)
                      ++|+.|-++..
T Consensus        76 ~~gDevai~PP   86 (88)
T d1vjka_          76 KDGDVVGVFPP   86 (88)
T ss_dssp             CTTCEEEEESC
T ss_pred             CCCCEEEEeCC
Confidence            88999977643

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.23  E-value=0.58  Score=34.64  Aligned_cols=75  Identities=13%  Similarity=0.176  Sum_probs=49.6

Q ss_pred             CCcEEEEEecCC--------cEEEEEEc---CCCcHHHHHHHHHhHhCCCCcc-----------eEEEEcCeecCCCCcc
Q 036691          284 SPFQIFVKTWGG--------KTITLDVQ---PYNTVQDVKVKLFDKLQTPLHL-----------QSIVFAGKRLFENHVL  341 (426)
Q Consensus       284 ~~m~i~v~~~~g--------~~~~l~v~---~~~tV~~lK~~i~~~~gip~~~-----------q~L~~~gk~L~d~~tL  341 (426)
                      ++|.|.|+...|        +...+++.   ...||.+|-+.+.++++-+...           ..++.+|...+   -+
T Consensus         3 ~~m~V~V~F~g~L~~lf~~~r~~~v~l~~~~~~~TV~dll~~L~~~~p~~~~~l~~~~~~lr~~v~v~vN~~di~---~l   79 (101)
T d1xo3a_           3 APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LL   79 (101)
T ss_dssp             SSCEEEEEECSSGGGGGTTCCCEEEECCSSSCCCCHHHHHHHHHHHHCCSCGGGSCCTTSCCSSEEEEETTEEHH---HH
T ss_pred             CCeEEEEEEechHHHHhCCcceEEEEcCCCCCCcCHHHHHHHHHHhCCcchhhhhccCcCeeeeEEEEEcCccee---cc
Confidence            578899988542        34455554   3579999999999987643222           12233333221   12


Q ss_pred             --ccCCCCCCCEEEEEeecCCC
Q 036691          342 --ARYNIQKHSTLHMVLAPSSR  361 (426)
Q Consensus       342 --~~y~I~~~~ti~l~~~~~gg  361 (426)
                        .++.|++||.|.++..+.||
T Consensus        80 ~gl~t~l~dgDeV~~~p~v~GG  101 (101)
T d1xo3a_          80 GELDYQLQDQDSILFISTLHGG  101 (101)
T ss_dssp             TTTSCCCCTTCEEEEEETTCCC
T ss_pred             CCCccCcCCCCEEEEeCCCCCC
Confidence              26789999999999888887

>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: First domain of FERM
domain: Merlin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.90  E-value=3.7  Score=28.92  Aligned_cols=74  Identities=8%  Similarity=0.068  Sum_probs=57.6

Q ss_pred             CcEEEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceE-EEE--cC--eecCCCCccccCCCCCCCEEEEEeecC
Q 036691          285 PFQIFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQS-IVF--AG--KRLFENHVLARYNIQKHSTLHMVLAPS  359 (426)
Q Consensus       285 ~m~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~-L~~--~g--k~L~d~~tL~~y~I~~~~ti~l~~~~~  359 (426)
                      .+.+.|..+++. +++.+++..+..+|-..+++..|+...+.- |.|  .|  .-|+.++.|..+.++.+..+.+.++++
T Consensus         2 ~~~v~V~lLD~~-le~~v~~~a~G~~L~d~Vc~~L~L~E~~YFGL~y~~~~~~~WLd~~k~l~kq~~~~~~~~~~~F~VK   80 (84)
T d1h4ra3           2 TFTVRIVTMDAE-MEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLAK   80 (84)
T ss_dssp             EEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEES
T ss_pred             eEEEEEEEcCCc-EEEEEcCCChHHHHHHHHHHHcCCcccccceEEEecCCceEEccCCCchhhhccCCCCCEEEEEEEE
Confidence            467889999975 799999999999999999999998766542 333  22  346778899998888777777766653

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.80  E-value=2.5  Score=29.79  Aligned_cols=65  Identities=12%  Similarity=0.213  Sum_probs=44.5

Q ss_pred             ceeEEEEcCC------C-ceeEEEEEcCCCcHHHHHHHHHHHhCC-----------CCCceEEEeCCeEeeccccccccc
Q 036691           61 EMKLFVKIPT------N-QTATVVEAMPYHTVQNIKTMIQVKEGI-----------QSDQFTLVYDGKLLKEDTATMTSM  122 (426)
Q Consensus        61 ~m~i~Vk~~~------g-~~~~~~~v~~~~tV~~lK~~I~~~~gi-----------p~~~q~L~~~g~~L~d~~~tL~~y  122 (426)
                      +|+|.|+...      | .... ++++.+.||.+|.+.+.++.+-           ....-++.-+|+.-.+      ++
T Consensus         1 smkI~v~~Fa~lre~~G~~~~~-~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~------d~   73 (88)
T d1vjka_           1 SVKVKVKYFARFRQLAGVDEEE-IELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------DE   73 (88)
T ss_dssp             CEEEEEEECTHHHHHHSSSEEE-EEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------TC
T ss_pred             CeEEEEEEhHHHHHHhCCCeEE-EECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCC------Cc
Confidence            5888888762      4 4556 8999999999999999887531           1122344455555444      45


Q ss_pred             ccccCcEEEE
Q 036691          123 NIKSESIIHL  132 (426)
Q Consensus       123 ~I~~~s~i~l  132 (426)
                      -+++|+.|.+
T Consensus        74 ~L~~gDevai   83 (88)
T d1vjka_          74 ELKDGDVVGV   83 (88)
T ss_dssp             BCCTTCEEEE
T ss_pred             CcCCCCEEEE
Confidence            6788898876

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.52  E-value=1.8  Score=29.83  Aligned_cols=43  Identities=12%  Similarity=-0.101  Sum_probs=38.9

Q ss_pred             EEEEecCCcEEEEEEcCCCcHHHHHHHHHhHhCCCCcceEEEE
Q 036691          288 IFVKTWGGKTITLDVQPYNTVQDVKVKLFDKLQTPLHLQSIVF  330 (426)
Q Consensus       288 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~  330 (426)
                      +.|..++|.+..+.+.|+.|+.+.-.++.++.|++++...++-
T Consensus         3 iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V~~   45 (73)
T d1wxma1           3 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYR   45 (73)
T ss_dssp             EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEE
T ss_pred             EEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEE
Confidence            5667789999999999999999999999999999999988754