Citrus Sinensis ID: 036703

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
Protein Sequence
FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLWK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHcc
Coil and Loop (DISEMBL)
FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMhwmpdhegwLSYIKFKLRYNEVQRARHIFERLVqchpynlsawINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEemgcncketDRARCIYKFAldripkgraEDLYRKFLAFEKQYGDREGIEDAIAGKMRLqyedgvrknpmnydtwFDYIRLEERVGNQERVREVYERAIanvppaeekRYWQRYIYLWINYALykevdagdlertRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLewspencyaWSKYTELEKSLDETERARAIFELAIAqpildlpeflwk
Flexible Loop (DISEMBL)
fidhgrnawdrvvtlsprvdQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKfaldripkgraeDLYRKFLAFekqygdregiEDAIAGKMRLqyedgvrknpmnyDTWFDYIRLEERVGNQERVREVYEraianvppaeekryWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIfyfsfsprmeERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAiaqpildlpeflwk
Low Complexity Region (SEG)
FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLWK
Disordered region (IsUnstruct)
******NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLW*
Disordered Region (DISOPRED)
FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLWK
Disordered Region (DISEMBL)
FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLWK
Disordered Region (DISPRO)
FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLP***W*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	365	2.2.26 [Sep-21-2011]
P63155	690	Crooked neck-like protein	yes	no	0.980	0.518	0.534	1e-112
P63154	690	Crooked neck-like protein	yes	no	0.980	0.518	0.534	1e-112
Q9BZJ0	848	Crooked neck-like protein	yes	no	0.980	0.422	0.539	1e-111
P17886	702	Protein crooked neck OS=D	yes	no	0.980	0.509	0.511	1e-108
Q54XP4	705	Crooked neck-like protein	yes	no	0.980	0.507	0.488	1e-103
Q5K654	677	Pre-mRNA-splicing factor	N/A	no	0.980	0.528	0.478	1e-102
Q4WT84	676	Pre-mRNA-splicing factor	yes	no	0.980	0.529	0.473	1e-101
Q5BDX1	673	Pre-mRNA-splicing factor	yes	no	0.980	0.531	0.481	1e-100
Q527H0	691	Pre-mRNA-splicing factor	N/A	no	0.983	0.519	0.468	2e-94
P0CO10	726	Pre-mRNA-splicing factor	yes	no	0.989	0.497	0.446	1e-91

>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2 SV=1

 Score =  403 bits (1036), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/395 (53%), Positives = 264/395 (66%), Gaps = 37/395 (9%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           ++H RN WDR +T  PRV+Q W  Y  MEE LGNVAGARQ+FERWM W P+ + W SYI 
Sbjct: 131 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 190

Query: 62  FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
           F+LRY EV+RAR I+ER V  HP  +  WI +A FE K      AR VYE AVE F  D+
Sbjct: 191 FELRYKEVERARTIYERFVLVHP-AVKNWIKYARFEEKHAYFAHARKVYERAVE-FFGDE 248

Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
           H + E L+VAFAKFEE   N KE +R R IYK+ALDRI K  A++L++ +  FEK++GDR
Sbjct: 249 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDR 304

Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
            GIED I  K R QYE+ V+ NP NYD WFDY+RL E     + VREVYERAIANVPP +
Sbjct: 305 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQ 364

Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT--------------LFIFYFSFSPR 287
           EKR+W+RYIYLW+NYALY+E++A D ERTR VY+               ++++Y  F  R
Sbjct: 365 EKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIR 424

Query: 288 ME-----------------ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
            +                 + ++FK YIE+EL L   D CRKLYEK+LE+ PENC +W K
Sbjct: 425 QKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIK 484

Query: 331 YTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           + ELE  L + ERARAI+ELAI+QP LD+PE LWK
Sbjct: 485 FAELETILGDIERARAIYELAISQPRLDMPEVLWK 519

May be involved in pre-mRNA splicing process.
Rattus norvegicus (taxid: 10116)

>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1

 Score =  403 bits (1036), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/395 (53%), Positives = 264/395 (66%), Gaps = 37/395 (9%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           ++H RN WDR +T  PRV+Q W  Y  MEE LGNVAGARQ+FERWM W P+ + W SYI 
Sbjct: 131 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 190

Query: 62  FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
           F+LRY EV+RAR I+ER V  HP  +  WI +A FE K      AR VYE AVE F  D+
Sbjct: 191 FELRYKEVERARTIYERFVLVHP-AVKNWIKYARFEEKHAYFAHARKVYERAVE-FFGDE 248

Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
           H + E L+VAFAKFEE   N KE +R R IYK+ALDRI K  A++L++ +  FEK++GDR
Sbjct: 249 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDR 304

Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
            GIED I  K R QYE+ V+ NP NYD WFDY+RL E     + VREVYERAIANVPP +
Sbjct: 305 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQ 364

Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT--------------LFIFYFSFSPR 287
           EKR+W+RYIYLW+NYALY+E++A D ERTR VY+               ++++Y  F  R
Sbjct: 365 EKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIR 424

Query: 288 ME-----------------ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
            +                 + ++FK YIE+EL L   D CRKLYEK+LE+ PENC +W K
Sbjct: 425 QKNLPFARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIK 484

Query: 331 YTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           + ELE  L + ERARAI+ELAI+QP LD+PE LWK
Sbjct: 485 FAELETILGDIERARAIYELAISQPRLDMPEVLWK 519

Involved in pre-mRNA splicing process.

Mus musculus (taxid: 10090)

>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4

 Score =  403 bits (1035), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/395 (53%), Positives = 263/395 (66%), Gaps = 37/395 (9%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           ++H RN WDR +T  PRV+Q W  Y  MEE LGNVAGARQ+FERWM W P+ + W SYI 
Sbjct: 292 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 351

Query: 62  FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
           F+LRY EV RAR I+ER V  HP ++  WI +A FE K      AR VYE AVE F  D+
Sbjct: 352 FELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKHAYFAHARKVYERAVE-FFGDE 409

Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
           H + E L+VAFAKFEE   N KE +R R IYK+ALDRI K  A++L++ +  FEK++GDR
Sbjct: 410 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDR 465

Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
            GIED I  K R QYE+ V+ NP NYD WFDY+RL E     E VREVYERAIANVPP +
Sbjct: 466 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQ 525

Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT--------------LFIFYFSFSPR 287
           EKR+W+RYIYLWINYALY+E++A D ERTR VY+               ++I Y  F  R
Sbjct: 526 EKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIR 585

Query: 288 ME-----------------ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
            +                 + ++FK YIE+EL L   D CRKLYEK+LE+ PENC +W K
Sbjct: 586 QKNLSLARRALGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIK 645

Query: 331 YTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           + ELE  L + +RARAI+ELAI+QP LD+PE LWK
Sbjct: 646 FAELETILGDIDRARAIYELAISQPRLDMPEVLWK 680

Involved in pre-mRNA splicing process.

Homo sapiens (taxid: 9606)

>sp|P17886|CRN_DROME Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2

 Score =  393 bits (1010), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/395 (51%), Positives = 263/395 (66%), Gaps = 37/395 (9%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           ++H RN WDR VT+ PRV+Q W  Y  MEE L NVAGARQ+FERWM W P+ + W +Y+ 
Sbjct: 126 VNHARNLWDRAVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVN 185

Query: 62  FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
           F+LRY E+ RAR I+ER V  HP ++  WI FA FE   G +  +R V+E AVE F  DD
Sbjct: 186 FELRYKEIDRAREIYERFVYVHP-DVKNWIKFARFEESHGFIHGSRRVFERAVE-FFGDD 243

Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
           + E E+LF+AFA+FEE     KE DRAR IYK+ALD +PK R ++L++ +   EK+YGDR
Sbjct: 244 YIE-ERLFIAFARFEE---GQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDR 299

Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
            GIED I  K + QYE  V  NP NYD WFDY+RL E  G+++++RE YERAI+NVPPA 
Sbjct: 300 AGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPAN 359

Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT--------------LFIFYFSFSPR 287
           EK +W+RYIYLWINYALY+E++A D ERTR +Y+T              L++ Y  F  R
Sbjct: 360 EKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIR 419

Query: 288 MEE-----------------RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
            +E                  ++F+ YI++E+ L   + CR LYEK+LE+ PENC  W K
Sbjct: 420 CKELQRARKALGLAIGMCPRDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMK 479

Query: 331 YTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           + ELE  L +T+RARAIFELA+ QP LD+PE LWK
Sbjct: 480 FAELENLLGDTDRARAIFELAVQQPRLDMPELLWK 514

May be involved in pre-mRNA splicing process. Involved in neurogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1 PE=3 SV=1

 Score =  376 bits (965), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/395 (48%), Positives = 254/395 (64%), Gaps = 37/395 (9%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           I+  RN WDR V L PRV QLW  Y  ME+ LGN   AR IFERWM W P+ + W SY+K
Sbjct: 125 INLARNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQWKPEPQAWNSYLK 184

Query: 62  FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
           F+ R    +  R IFE+ +  HPY +  WI +  FE ++G ++ AR +++ A+E FL +D
Sbjct: 185 FEQRLKLFENTRLIFEKYILVHPY-IKTWIKYTKFEERLGNIENARTIFQRAIE-FLGED 242

Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
            ++ EQLF+AFAKFEE     KE +RAR IYK+A+D +PK RA+DL+  F  FEKQ+GDR
Sbjct: 243 GND-EQLFIAFAKFEE---KYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGDR 298

Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
            GIED + GK R QYE+ ++KN  NYD WFDY+++EE  G  E+ RE+YER+I N+PP  
Sbjct: 299 IGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTN 358

Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVY--------------RTLFIFYFSFSPR 287
           EK++W+RYIYLWINYAL++E+ + D+ER R VY                ++I Y +F  R
Sbjct: 359 EKKHWKRYIYLWINYALFEELISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIR 418

Query: 288 M-----------------EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
                              + +IF +YI +E+ LGN D  R LYEKYLE  P+NC AW K
Sbjct: 419 QLNLDKARLIYGQAIGRNPKSKIFDQYIHLEIELGNFDRVRTLYEKYLEIMPDNCDAWCK 478

Query: 331 YTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           + +LE  L ET RARAIFELAI QP LD PE +WK
Sbjct: 479 FAQLETELGETVRARAIFELAIQQPNLDRPEVVWK 513

Involved in pre-mRNA splicing.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis GN=CLF1 PE=3 SV=1

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/395 (47%), Positives = 255/395 (64%), Gaps = 37/395 (9%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           I+H RN  DR VT+  RVD+LW  Y+ MEE LGN+ G RQ+FERWM W PD   W +YIK
Sbjct: 122 INHARNLLDRAVTIYSRVDKLWYKYVYMEEMLGNIPGTRQVFERWMSWEPDEGAWGAYIK 181

Query: 62  FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
            + RYNE  R R IFER    HP     WI +A FE + G  D  R VY  A+E    D 
Sbjct: 182 LEKRYNEFDRVRAIFERFTVVHP-EPKNWIKWARFEEEYGTSDMVREVYGLAIETLGEDF 240

Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
            DE  +LF+A+A++E      KE +RAR IYK+ALDR+P+ ++  L++ +  FEKQ+GDR
Sbjct: 241 MDE--KLFIAYARYE---AKLKEFERARAIYKYALDRLPRAKSVALHKAYTTFEKQFGDR 295

Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
           EG+ED I  K R+QYE+ +++NP NYD WFD++RLEE  G+ ERVR+VYERAIA +PP++
Sbjct: 296 EGVEDVILSKRRVQYEEQIKENPKNYDIWFDFVRLEESSGDVERVRDVYERAIAQMPPSQ 355

Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR--------------TLFIFYFSFSPR 287
           EKR+W+RYIYLWI YAL++E++A D+ER   +Y+               +++    F  R
Sbjct: 356 EKRHWRRYIYLWIFYALWEELEAKDMERAHQIYQECIRLIPHKKFTFAKIWLMKAQFEIR 415

Query: 288 M-----------------EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
                              + ++FK YI++E  L     CRKL+EK +EWSP NC AW K
Sbjct: 416 QMDLQAARKTLGHAIGACPKDKLFKGYIDLERQLFEFVRCRKLFEKQIEWSPSNCQAWIK 475

Query: 331 YTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           + ELE+ LD+ +RARAI+EL I+QP+LD+PE LWK
Sbjct: 476 FAELERGLDDIDRARAIYELGISQPVLDMPELLWK 510

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Paracoccidioides brasiliensis (taxid: 121759)

>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/395 (47%), Positives = 254/395 (64%), Gaps = 37/395 (9%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           I+H RN  DR VT+ PRVD+ W  Y+ MEE LGN+ G RQ+FERWM W PD   W +YIK
Sbjct: 122 INHARNLLDRAVTILPRVDKFWYKYVYMEETLGNIQGTRQVFERWMSWEPDEGAWSAYIK 181

Query: 62  FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
            + RYNE +RAR IF+R    HP     WI +A FE + G  D  R VY  A+E    D 
Sbjct: 182 LEKRYNEFERARAIFQRFTIVHP-EPRNWIKWARFEEEYGTSDLVREVYGMAIETLGEDF 240

Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
            DE  +LF+A+AKFE      KE +RAR IYK+ALDR+P+ +A  L++ +  FEKQ+GDR
Sbjct: 241 MDE--KLFIAYAKFE---AKLKEYERARAIYKYALDRLPRSKAMALHKAYTTFEKQFGDR 295

Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
           EG+ED I  K R+QYE+ +++NP NYD WFD+ RLEE  G+ +RVR++YERAIA +PP++
Sbjct: 296 EGVEDVILSKRRVQYEEQLKENPRNYDVWFDFARLEETSGDPDRVRDIYERAIAQIPPSQ 355

Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR--------------TLFIFYFSFSPR 287
           EKR+W+RYIYLWI YA+++E++A D++R R +Y                +++    F  R
Sbjct: 356 EKRHWRRYIYLWIFYAIWEEMEAKDVDRARQIYTECLKLIPHKKFTFAKIWLLKAQFDIR 415

Query: 288 M-----------------EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
                              + ++F+ YI++E  L     CR LYEK +EW+P N  +W K
Sbjct: 416 QMDLQAARKTLGQAIGMCPKDKLFRGYIDLERQLFEFVRCRTLYEKQIEWNPANSQSWIK 475

Query: 331 YTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           Y ELE+ LD++ERARAIFEL I QP+LD+PE +WK
Sbjct: 476 YAELERGLDDSERARAIFELGIDQPMLDMPELVWK 510

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q5BDX1|CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1 PE=3 SV=2

 Score =  366 bits (940), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/395 (48%), Positives = 255/395 (64%), Gaps = 37/395 (9%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           I+H RN  DR VT+ PRVD+LW  Y+ MEE LGN+ G RQ+FERWM W PD   W +YIK
Sbjct: 122 INHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEPDEGAWSAYIK 181

Query: 62  FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
            + RYNE +RAR IF+R    HP     WI +A FE + G  D  R VY  AVE    D 
Sbjct: 182 LEKRYNEFERARAIFQRFTIVHP-EPRNWIKWARFEEEYGTSDLVREVYGLAVETLGEDF 240

Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
            DE  +LF+A+A+FE      KE +RAR IYK+ALDR+P+ ++  L++ +  FEKQ+GDR
Sbjct: 241 MDE--KLFIAYARFE---TKLKEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDR 295

Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
           EG+E+ I  K R+QYE+ +++N  NYD WFD+ RLEE+ G+ ERVR+VYERAIA +PP++
Sbjct: 296 EGVENVILAKRRVQYEEQLKENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQ 355

Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY----FSFS------PRMEER 291
           EKR+W+RYIYLWI YAL++E++A D++R R VY           F+F+       + E R
Sbjct: 356 EKRHWRRYIYLWIFYALWEEMEAKDIDRARQVYTECLKLIPHKKFTFAKVWLMKAQFEVR 415

Query: 292 ---------------------RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK 330
                                ++F+ YI++E  L     CR LYEK +EW+P N  +W +
Sbjct: 416 QLNLQAARKTLGQAIGMCPKDKLFRGYIDLERQLFEFVRCRTLYEKQIEWNPSNSQSWIQ 475

Query: 331 YTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           Y ELE+ LD+TERARAI+EL I QP LD+PE +WK
Sbjct: 476 YAELERGLDDTERARAIYELGIDQPTLDMPELVWK 510

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1

 Score =  345 bits (886), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 186/397 (46%), Positives = 245/397 (61%), Gaps = 38/397 (9%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           I+  RN  DR VT  PRVD+LW  Y+ +EE LGN+ G RQ+FERWM W PD   W ++IK
Sbjct: 122 INFARNLLDRAVTHLPRVDKLWYKYVWVEEMLGNIPGVRQVFERWMEWQPDEAAWSAFIK 181

Query: 62  FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
            + RY E  RAR IF R    HP     WI ++ FE + G  DR R V+E A+E  L+  
Sbjct: 182 LEQRYGEYDRAREIFTRFTMVHP-EPRNWIKWSKFEEEYGTSDRVREVFERAIEE-LSKY 239

Query: 122 HDE--AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179
            DE   E+LF+A+A++E       + DRAR IYKF L+ +P+ +A  L++++  FEKQYG
Sbjct: 240 GDEFVEERLFIAYARYE---AKLHDLDRARAIYKFGLENLPRSKAMLLHKEYTTFEKQYG 296

Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
           DREG+ED +  K R  YED VR+NP NYD WFDY RLEE  G+ +R REVYE+AIA VPP
Sbjct: 297 DREGVEDVVLSKRRRHYEDLVRENPKNYDVWFDYARLEEASGDIDRTREVYEKAIAQVPP 356

Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF------IFYFS--------FS 285
            + KR+W+RYIYLWI +AL++E +A + ER R VY T         F F+        F 
Sbjct: 357 TQAKRHWRRYIYLWIFFALWEETEAKNPERARQVYDTCLKLIPHRTFTFAKVWMHKAHFE 416

Query: 286 PRM-----------------EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAW 328
            R                   + R+FK YIEME  L     CR LYEK++ ++P NC  W
Sbjct: 417 IRQGDLAAARKTLGRAIGMCPKDRLFKGYIEMEQKLYEFGRCRILYEKHIAYNPANCSTW 476

Query: 329 SKYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
            K+ ELE+ LD+ +RARAI ++ IAQP+LD+PE +WK
Sbjct: 477 VKWAELERGLDDLDRARAILDMGIAQPVLDMPEVVWK 513

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

>sp|P0CO10|CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CLF1 PE=3 SV=1

 Score =  336 bits (862), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 181/405 (44%), Positives = 249/405 (61%), Gaps = 44/405 (10%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           I+H RN +DR +TL PRVD LW  Y+ +EE L NV+GARQIFERWM W P+ + W SYIK
Sbjct: 125 INHARNLFDRAITLLPRVDALWYKYVYLEELLLNVSGARQIFERWMQWEPNDKAWQSYIK 184

Query: 62  FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
            + RYNE+ RA  I+ER + C P   + W+ +A FE   G+ D+AR V++ A+E F  D+
Sbjct: 185 LEERYNELDRASAIYERWIACRPIPKN-WVTWAKFEEDRGQPDKAREVFQTALE-FFGDE 242

Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
            ++ E+    FA F  M    KE +RAR IYKFAL R+P+ ++  LY ++  FEKQ+GDR
Sbjct: 243 EEQVEKAQSVFAAFARMETRLKEFERARVIYKFALARLPRSKSASLYAQYTKFEKQHGDR 302

Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE---RVGNQE-------RVREVYE 231
            G+E  + GK R+QYE+ +  +P NYD WF   RLEE   R   ++       RVREVYE
Sbjct: 303 AGVELTVLGKRRIQYEEELAYDPTNYDAWFSLARLEEDAYRADREDGEDVEPMRVREVYE 362

Query: 232 RAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT--------------L 277
           RA+ANVPPA EKRYW+RYIYLW+ YA ++E+D  D +R RDVY+               L
Sbjct: 363 RAVANVPPALEKRYWRRYIYLWLQYAAFEEIDTKDYDRARDVYKAAVKLVPHKTFTFAKL 422

Query: 278 FIFYFSFSPRM-----------------EERRIFKKYIEMELCLGNIDPCRKLYEKYLEW 320
           ++ Y  F  R                   + ++F  YIE+E+ L   D  R LYEK+L +
Sbjct: 423 WLAYAYFEIRRLDVSAARKVLGAGIGMCPKPKLFTGYIELEMRLREFDRVRTLYEKFLTY 482

Query: 321 SPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
            P    AW ++T++E ++++ ER RAIFELA+ Q  LD+PE +WK
Sbjct: 483 DPSLSSAWIQWTQVESAVEDFERVRAIFELAVQQS-LDMPEIVWK 526

Involved in pre-mRNA splicing and cell cycle progression. Required for the spliceosome assembly and initiation of the DNA replication.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
224058393	687	predicted protein [Populus trichocarpa]	0.983	0.522	0.727	1e-156
357481457	693	Pre-mRNA-splicing factor CLF1 [Medicago	0.983	0.518	0.719	1e-155
255537721	696	crooked neck protein, putative [Ricinus	0.983	0.515	0.712	1e-155
449525555	703	PREDICTED: LOW QUALITY PROTEIN: crooked	0.983	0.510	0.714	1e-154
449443386	703	PREDICTED: crooked neck-like protein 1-l	0.983	0.510	0.714	1e-154
224072126	687	predicted protein [Populus trichocarpa]	0.983	0.522	0.717	1e-154
356539448	695	PREDICTED: crooked neck-like protein 1-l	0.983	0.516	0.707	1e-154
356497297	695	PREDICTED: crooked neck-like protein 1-l	0.983	0.516	0.707	1e-154
225426022	703	PREDICTED: crooked neck-like protein 1 [	0.983	0.510	0.709	1e-153
357501061	695	Pre-mRNA-splicing factor CLF1 [Medicago	0.980	0.515	0.699	1e-148

>gi|224058393|ref|XP_002299492.1| predicted protein [Populus trichocarpa] gi|222846750|gb|EEE84297.1| predicted protein [Populus trichocarpa]

 Score =  556 bits (1432), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 288/396 (72%), Positives = 316/396 (79%), Gaps = 37/396 (9%)

Query: 1   FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
           FI+H RN WDR VTL PR+DQLW  YI MEE LGNVAGARQIFERWM WMPD +GWLSYI
Sbjct: 140 FINHARNVWDRAVTLLPRIDQLWYKYIHMEEMLGNVAGARQIFERWMGWMPDQQGWLSYI 199

Query: 61  KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
           KF+LRYNEV+RAR IFER VQCHP  +SAWI +A FEMK GEV RARNVYE AVE  LAD
Sbjct: 200 KFELRYNEVERARGIFERFVQCHP-KVSAWIRYAKFEMKNGEVARARNVYERAVEK-LAD 257

Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
           D +EAE LFVAFA+FEE    CKET+RARCIYKFALD IPKGRAEDLYRKF+AFEKQYGD
Sbjct: 258 D-EEAEMLFVAFAEFEE---RCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGD 313

Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
           +EGIEDAI GK R QYED VRKNP+NYD WFDYIRLEE VGN+ER+REVYERAIANVPPA
Sbjct: 314 KEGIEDAIVGKRRFQYEDEVRKNPLNYDAWFDYIRLEESVGNKERIREVYERAIANVPPA 373

Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF------IFYFS----FSPRMEE 290
           +EKRYWQRYIYLWINYALY+E+DA D+ERTR+VYR         IF F+     + + E 
Sbjct: 374 QEKRYWQRYIYLWINYALYEELDAEDIERTREVYRECLNLIPHEIFSFAKIWLLAAQFEI 433

Query: 291 R---------------------RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329
           R                     +IFKKYIE+EL LGNID CRKLYEKYLEWSPENCYAWS
Sbjct: 434 RQLNLKGARQVLGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWS 493

Query: 330 KYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           KY ELE+SL ETERAR+IFELAIAQP LD+PE LWK
Sbjct: 494 KYAELERSLSETERARSIFELAIAQPALDMPELLWK 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481457|ref|XP_003611014.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula] gi|355512349|gb|AES93972.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 285/396 (71%), Positives = 312/396 (78%), Gaps = 37/396 (9%)

Query: 1   FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
           FI+H RN WDR VTL PRVDQLW  YI MEE LGNVAGARQ+FERWM WMPD +GWLSYI
Sbjct: 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMKWMPDQQGWLSYI 199

Query: 61  KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
           KF+LRYNE++RAR IFER V CHP  + AWI +A FEMK GEV +ARNVYE AVE  LAD
Sbjct: 200 KFELRYNEIERARGIFERFVLCHP-RVGAWIRYAKFEMKNGEVPKARNVYERAVEK-LAD 257

Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
           D +EAE LFVAFA+FEE    CKE +RARCIYKFALD IPKGRAEDLYRKF+AFEKQYGD
Sbjct: 258 D-EEAELLFVAFAEFEE---RCKEAERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGD 313

Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
           REGIEDAI GK R QYED VRKNP+NYD+WFDYIRLEE VGN+ER REVYERAIANVPPA
Sbjct: 314 REGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNKERTREVYERAIANVPPA 373

Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY----FSFSP---------- 286
           EEKRYWQRYIYLWINYALY+E+DAGD+ERTRDVY+          FSF+           
Sbjct: 374 EEKRYWQRYIYLWINYALYEELDAGDMERTRDVYKECLNQIPHQKFSFAKIWLLAAQFEI 433

Query: 287 -----------------RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329
                            +  + +IFKKYIE+EL LGNID CRKLYEKYLEWSPENCYAWS
Sbjct: 434 RQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWS 493

Query: 330 KYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           KY ELE+SL ETERARAIFELAIAQP LD+PE LWK
Sbjct: 494 KYAELERSLAETERARAIFELAIAQPALDMPELLWK 529

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537721|ref|XP_002509927.1| crooked neck protein, putative [Ricinus communis] gi|223549826|gb|EEF51314.1| crooked neck protein, putative [Ricinus communis]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 282/396 (71%), Positives = 313/396 (79%), Gaps = 37/396 (9%)

Query: 1   FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
           FI+H RN WDR VTL PRVDQLW  YI ME  LGNVAGARQIFERWM WMPD +GW+SYI
Sbjct: 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMETMLGNVAGARQIFERWMSWMPDQQGWISYI 199

Query: 61  KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
            F+ +YNE++RAR IFER VQCHP  +SAWI +A FEMK GE+ +ARNVYE AVE  LAD
Sbjct: 200 NFEKKYNEIERARAIFERFVQCHP-KVSAWIRYAKFEMKNGEIAKARNVYERAVEK-LAD 257

Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
           D +EAE+LFVAFA+FEE    CKETDRARCIYKFALD IPKGRAEDLYRKF+AFEKQYGD
Sbjct: 258 D-EEAEELFVAFAEFEE---KCKETDRARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGD 313

Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
           +EGIEDAI GK R QYED VRKNP+NYD WFDYIRLEE VGN+ER+REVYERAIANVPPA
Sbjct: 314 KEGIEDAIVGKRRFQYEDEVRKNPLNYDCWFDYIRLEESVGNKERIREVYERAIANVPPA 373

Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY----FSFSP---------- 286
           EEKRYWQRYIYLWINYALY+E+DAGD+ERTRDVYR          FSF+           
Sbjct: 374 EEKRYWQRYIYLWINYALYEELDAGDVERTRDVYRECLNLIPHKKFSFAKIWLLAGQFEI 433

Query: 287 -----------------RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329
                            +  + +IFKKYIE+EL LGNID CRKLYEKYLEW+PENCYAWS
Sbjct: 434 RQLNLKGARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWAPENCYAWS 493

Query: 330 KYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           KY ELE+SL ET+RARAIFELAIAQP LD+PE LWK
Sbjct: 494 KYAELERSLAETDRARAIFELAIAQPALDMPELLWK 529

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525555|ref|XP_004169782.1| PREDICTED: LOW QUALITY PROTEIN: crooked neck-like protein 1-like [Cucumis sativus]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/396 (71%), Positives = 311/396 (78%), Gaps = 37/396 (9%)

Query: 1   FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
           FI+H RN WDR VTL PRVDQLW  YI MEE LGNVAGARQIFERWM WMPD +GWLSYI
Sbjct: 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMGWMPDQQGWLSYI 199

Query: 61  KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
           KF+LRYNEV+RAR IFER VQCHP  + AWI FA FEMK GE+ RAR VYE AVE  LAD
Sbjct: 200 KFELRYNEVERARGIFERFVQCHP-KVGAWIRFAKFEMKNGEITRARKVYETAVEK-LAD 257

Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
           D +EAEQLFVAFA+FEE    CKET+RARCIYKFALD IPKGRAED+YRKF+AFEKQYGD
Sbjct: 258 D-EEAEQLFVAFAEFEE---RCKETERARCIYKFALDHIPKGRAEDIYRKFVAFEKQYGD 313

Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
           +EGIEDAI GK R QYE+ VRKNP+NYD+WFDYIRLEE  GN+ER+REVYERAIANVPPA
Sbjct: 314 KEGIEDAIVGKRRFQYEEEVRKNPLNYDSWFDYIRLEETAGNKERIREVYERAIANVPPA 373

Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY----FSFSP---------- 286
           EEKRYWQRYIYLWINYALY+E+DA D ERTRDVY+          FSF+           
Sbjct: 374 EEKRYWQRYIYLWINYALYEELDAADAERTRDVYKECLNLIPHSKFSFAKIWLLAAQFEI 433

Query: 287 -----------------RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329
                            R  + +IFKKYIE+EL LGNID CRKLYEKYL WSPENCYAWS
Sbjct: 434 RQLNLKGARQILGNAIGRAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLVWSPENCYAWS 493

Query: 330 KYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           KY ELE+SL ET+RAR+IFELAIAQP LD+PE LWK
Sbjct: 494 KYAELERSLCETDRARSIFELAIAQPALDMPELLWK 529

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443386|ref|XP_004139458.1| PREDICTED: crooked neck-like protein 1-like [Cucumis sativus]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/396 (71%), Positives = 311/396 (78%), Gaps = 37/396 (9%)

Query: 1   FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
           FI+H RN WDR VTL PRVDQLW  YI MEE LGNVAGARQIFERWM WMPD +GWLSYI
Sbjct: 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMGWMPDQQGWLSYI 199

Query: 61  KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
           KF+LRYNEV+RAR IFER VQCHP  + AWI FA FEMK GE+ RAR VYE AVE  LAD
Sbjct: 200 KFELRYNEVERARGIFERFVQCHP-KVGAWIRFAKFEMKNGEITRARKVYETAVEK-LAD 257

Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
           D +EAEQLFVAFA+FEE    CKET+RARCIYKFALD IPKGRAED+YRKF+AFEKQYGD
Sbjct: 258 D-EEAEQLFVAFAEFEE---RCKETERARCIYKFALDHIPKGRAEDIYRKFVAFEKQYGD 313

Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
           +EGIEDAI GK R QYE+ VRKNP+NYD+WFDYIRLEE  GN+ER+REVYERAIANVPPA
Sbjct: 314 KEGIEDAIVGKRRFQYEEEVRKNPLNYDSWFDYIRLEETAGNKERIREVYERAIANVPPA 373

Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY----FSFSP---------- 286
           EEKRYWQRYIYLWINYALY+E+DA D ERTRDVY+          FSF+           
Sbjct: 374 EEKRYWQRYIYLWINYALYEELDAADAERTRDVYKECLNLIPHSKFSFAKIWLLAAQFEI 433

Query: 287 -----------------RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329
                            R  + +IFKKYIE+EL LGNID CRKLYEKYL WSPENCYAWS
Sbjct: 434 RQLNLKGARQILGNAIGRAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLVWSPENCYAWS 493

Query: 330 KYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           KY ELE+SL ET+RAR+IFELAIAQP LD+PE LWK
Sbjct: 494 KYAELERSLCETDRARSIFELAIAQPALDMPELLWK 529

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072126|ref|XP_002303629.1| predicted protein [Populus trichocarpa] gi|222841061|gb|EEE78608.1| predicted protein [Populus trichocarpa]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 284/396 (71%), Positives = 312/396 (78%), Gaps = 37/396 (9%)

Query: 1   FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
           FI+H RN WDR VTL PRVDQLW  YI MEE LGN+AGARQIFERWM WMPD +GWLSYI
Sbjct: 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNIAGARQIFERWMGWMPDQQGWLSYI 199

Query: 61  KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
           KF+LRYNEV+RAR IFER VQCHP  +SAWI FA FEMK GEV RARNVYE AV+  LAD
Sbjct: 200 KFELRYNEVERARGIFERFVQCHP-KVSAWIRFAKFEMKNGEVARARNVYEKAVQK-LAD 257

Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
           D +EAE LFVAFA+FEE    CKET+RARCIYKFALD IPKGRAEDLYRKF+AFEKQYGD
Sbjct: 258 D-EEAEMLFVAFAEFEE---RCKETERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGD 313

Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
           +EGIEDAI GK R QYED VRKNP+NYD WFDYIRLEE V N+ R+REVYERAIANVPPA
Sbjct: 314 KEGIEDAIVGKRRFQYEDEVRKNPLNYDAWFDYIRLEESVTNKVRIREVYERAIANVPPA 373

Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY----FSFSP---------- 286
           +EKRYWQRYIYLWINYALY+E+DA D+ERTR+VYR          FSF+           
Sbjct: 374 QEKRYWQRYIYLWINYALYEELDAEDIERTREVYRECLNLIPHEKFSFAKIWLLAAQFEI 433

Query: 287 -----------------RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329
                            +  + +IFKKYIE+EL LGNID CRKLYEKYLEWSPENCYAWS
Sbjct: 434 RQLNLNGARQVLGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWS 493

Query: 330 KYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           KY ELE+SL ETERAR+IFELAIAQP LD+PE LWK
Sbjct: 494 KYAELERSLSETERARSIFELAIAQPALDMPELLWK 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539448|ref|XP_003538210.1| PREDICTED: crooked neck-like protein 1-like [Glycine max]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/396 (70%), Positives = 314/396 (79%), Gaps = 37/396 (9%)

Query: 1   FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
           FI+H RN WDR VTL PRVDQLW  YI MEE LGNVAGARQ+FERWM W PD +GWLSYI
Sbjct: 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMKWTPDQQGWLSYI 199

Query: 61  KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
           KF+LRYNE++RAR IFER V+CHP  + AWI +A FEMK GEV R+RNVYE AV+  L+D
Sbjct: 200 KFELRYNEIERARGIFERFVECHP-RVGAWIRYAKFEMKNGEVARSRNVYERAVDK-LSD 257

Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
           D +EAEQLFVAFA+FEE    CKET+RAR IYKFALD IPKGRAEDLYRKF+AFEKQYGD
Sbjct: 258 D-EEAEQLFVAFAEFEE---RCKETERARAIYKFALDHIPKGRAEDLYRKFVAFEKQYGD 313

Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
           REGIEDAI GK R QYED V+KNP+NYD+WFDYIRLEE VG++ER+REVYERAIANVPPA
Sbjct: 314 REGIEDAIVGKRRFQYEDEVKKNPLNYDSWFDYIRLEESVGDKERIREVYERAIANVPPA 373

Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF----IFYFSFSP---------- 286
           EEKRYWQRYIYLWINYALY+E+DAGD+ERTRDVY+          FSF+           
Sbjct: 374 EEKRYWQRYIYLWINYALYEELDAGDMERTRDVYKECLNQIPHLKFSFAKIWLLAAQFEI 433

Query: 287 -----------------RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329
                            +  + +IFKKYIE+EL LGNID CRKLYEKYLEWSPENCYAWS
Sbjct: 434 RQLNLKAARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWS 493

Query: 330 KYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           KY ELE+SL ET+RARAIFELAIAQP LD+PE LWK
Sbjct: 494 KYAELERSLSETDRARAIFELAIAQPALDMPELLWK 529

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497297|ref|XP_003517497.1| PREDICTED: crooked neck-like protein 1-like [Glycine max]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 280/396 (70%), Positives = 314/396 (79%), Gaps = 37/396 (9%)

Query: 1   FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
           FI+H RN WDR VTL PRVDQLW  YI MEE LGNVAGARQ+FERWM W PD +GWLSYI
Sbjct: 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMKWTPDQQGWLSYI 199

Query: 61  KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
           KF+LRYNE++RAR IFER V+CHP  + AWI +A FEMK GEV R+RNVYE AV+  L+D
Sbjct: 200 KFELRYNEIERARGIFERFVECHP-RVGAWIRYAKFEMKNGEVVRSRNVYERAVDK-LSD 257

Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
           D +EAEQLFVAFA+FEE    CKET+RAR IYKFALD IPKGRAEDLYRKF+AFEKQYGD
Sbjct: 258 D-EEAEQLFVAFAEFEE---RCKETERARAIYKFALDHIPKGRAEDLYRKFVAFEKQYGD 313

Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
           REGIEDAI GK R QYED V+KNP+NYD+WFDYIRLEE VG++ER+REVYERAIANVPPA
Sbjct: 314 REGIEDAIVGKRRFQYEDEVKKNPLNYDSWFDYIRLEESVGDKERIREVYERAIANVPPA 373

Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY----FSFSP---------- 286
           EEKRYWQRYIYLWINYALY+E+DAGD+ERTRDVY+          FSF+           
Sbjct: 374 EEKRYWQRYIYLWINYALYEELDAGDMERTRDVYKECLNQIPHQKFSFAKIWLLAAQFEI 433

Query: 287 -----------------RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329
                            +  + +IFKKYIE+EL LGNID CRKLYEKYLEWSPENCYAWS
Sbjct: 434 RQLNLRAARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWS 493

Query: 330 KYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           KY ELE+SL ET+RARAIFELAIAQP LD+PE LWK
Sbjct: 494 KYAELERSLSETDRARAIFELAIAQPALDMPELLWK 529

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426022|ref|XP_002273571.1| PREDICTED: crooked neck-like protein 1 [Vitis vinifera] gi|147864786|emb|CAN81550.1| hypothetical protein VITISV_028250 [Vitis vinifera]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 281/396 (70%), Positives = 309/396 (78%), Gaps = 37/396 (9%)

Query: 1   FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
           FI+H RN WDR VTL PRVDQLW  YI MEE LGNVAGARQIFERWM WMPD +GWLSYI
Sbjct: 139 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQIFERWMTWMPDQQGWLSYI 198

Query: 61  KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
           KF++RYNE++RAR IFER VQCHP  + AWI +A FEMK GEV RARN YE A+E  LAD
Sbjct: 199 KFEIRYNEMERARGIFERFVQCHP-KVGAWIRYAKFEMKNGEVARARNCYERAIEK-LAD 256

Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
           D D AEQLF+AFA+FEE    CKE++RARCIYKFALD IPKGRAEDLYRKF+AFEKQYGD
Sbjct: 257 DED-AEQLFLAFAEFEE---RCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGD 312

Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
           +EGIEDAI GK R QYE+ VRKNP+NYD+WFDYIRLEE  GN+ R REVYERAIANVPPA
Sbjct: 313 KEGIEDAIVGKRRFQYEEEVRKNPLNYDSWFDYIRLEENTGNKARTREVYERAIANVPPA 372

Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY----FSFSP---------- 286
           EEKRYWQRYIYLWINYALY+E++A D ERTRDVYR          FSF+           
Sbjct: 373 EEKRYWQRYIYLWINYALYEELEAEDAERTRDVYRECLKLIPHDKFSFAKIWLMAGQFEI 432

Query: 287 -----------------RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329
                            +  + +IFKKYIE+EL LGNID CRKLYEKYLEWSPENCYAWS
Sbjct: 433 RQLNLKGARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWS 492

Query: 330 KYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           KY ELEKSL ETERARAIFELAIAQP LD+PE LWK
Sbjct: 493 KYAELEKSLSETERARAIFELAIAQPALDMPELLWK 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501061|ref|XP_003620819.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula] gi|357501261|ref|XP_003620919.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula] gi|355495834|gb|AES77037.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula] gi|355495934|gb|AES77137.1| Pre-mRNA-splicing factor CLF1 [Medicago truncatula]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 277/396 (69%), Positives = 303/396 (76%), Gaps = 38/396 (9%)

Query: 1   FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
           FI+H RN WDR VTL PRVDQLW  YI MEE LGNVAGAR +FERWM WMPD +GWLSYI
Sbjct: 140 FINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARLVFERWMKWMPDQQGWLSYI 199

Query: 61  KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
           KF+LRYNE++RAR IFER V CHP  + AWI +A FEMK GEV +AR VYE AVE  LAD
Sbjct: 200 KFELRYNEIERARGIFERFVLCHP-RVGAWIRYAKFEMKNGEVPKARIVYERAVE--LAD 256

Query: 121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
           D +EAE LFVAFA+FEE    CKE  RARCIYKFALD IPKGRAE LYRKF AFEKQYGD
Sbjct: 257 D-EEAELLFVAFAEFEE---RCKEVGRARCIYKFALDHIPKGRAEVLYRKFAAFEKQYGD 312

Query: 181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
           REGIEDAI GK R QYED V KNP+NYD WFDYIRLEE VGN+ER REVYERAIANVP A
Sbjct: 313 REGIEDAIVGKRRFQYEDEVMKNPLNYDLWFDYIRLEESVGNKERTREVYERAIANVPLA 372

Query: 241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY----FSFSP---------- 286
           EEKRYWQRYIYLWINYALY+E+DAGD+E+TRDVY+          FSF+           
Sbjct: 373 EEKRYWQRYIYLWINYALYEELDAGDMEQTRDVYKECLNQIPHQKFSFAKIWLLAAQFEI 432

Query: 287 -----------------RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS 329
                            +  + +IFKKYIE+EL LGNID CRKLYEKYLEW+PENCYAW 
Sbjct: 433 RQLNLTGSRQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWTPENCYAWC 492

Query: 330 KYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
           KY ELE+SL ETERARAIFELAIAQP LD+PE LWK
Sbjct: 493 KYAELERSLAETERARAIFELAIAQPALDMPELLWK 528

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	365
TAIR|locus:2152965	705	AT5G41770 [Arabidopsis thalian	0.926	0.479	0.621	3.8e-114
TAIR|locus:2161363	673	AT5G45990 [Arabidopsis thalian	0.926	0.502	0.593	1.2e-106
TAIR|locus:2080853	413	AT3G51110 [Arabidopsis thalian	0.736	0.651	0.653	8.2e-99
TAIR|locus:2089999	657	AT3G13210 [Arabidopsis thalian	0.895	0.497	0.542	7.8e-94
UNIPROTKB|J9P5Z1	728	CRNKL1 "Uncharacterized protei	0.926	0.464	0.510	4.6e-89
UNIPROTKB|Q5JY65	836	CRNKL1 "Crooked neck-like prot	0.926	0.404	0.512	1.6e-88
UNIPROTKB|Q9BZJ0	848	CRNKL1 "Crooked neck-like prot	0.926	0.398	0.512	1.6e-88
MGI|MGI:1914127	690	Crnkl1 "Crn, crooked neck-like	0.926	0.489	0.507	4.1e-88
RGD|620507	690	Crnkl1 "crooked neck pre-mRNA	0.926	0.489	0.507	4.1e-88
UNIPROTKB|F1MZT2	781	CRNKL1 "Uncharacterized protei	0.926	0.432	0.509	5.3e-88

TAIR|locus:2152965 AT5G41770 [Arabidopsis thaliana (taxid:3702)]

 Score = 1108 (395.1 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
 Identities = 218/351 (62%), Positives = 265/351 (75%)

Query:     1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
             F++  RN WDR VTL PRVDQLW  YI MEE LGN+AGARQIFERWM W PD +GWLS+I
Sbjct:   141 FVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQIFERWMDWSPDQQGWLSFI 200

Query:    61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD 120
             KF+LRYNE++RAR I+ER V CHP  +SA+I +A FEMK GEV R R+VYE A E  LAD
Sbjct:   201 KFELRYNEIERARTIYERFVLCHP-KVSAYIRYAKFEMKGGEVARCRSVYERATEK-LAD 258

Query:   121 DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD 180
             D +EAE LFVAFA+FEE    CKE +RAR IYKFALD IPKGRAEDLYRKF+AFEKQYGD
Sbjct:   259 D-EEAEILFVAFAEFEE---RCKEVERARFIYKFALDHIPKGRAEDLYRKFVAFEKQYGD 314

Query:   181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA 240
             +EGIEDAI GK R QYED VRK+P NYD+WFDY+RLEE VGN++R+RE+YERAIANVPPA
Sbjct:   315 KEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPA 374

Query:   241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF--IFYFSFSPRMEERRIFKKYI 298
             EEKRYWQRYIYLWINYAL++E++  D+ERTRDVYR     I +  FS      +I+    
Sbjct:   375 EEKRYWQRYIYLWINYALFEEIETEDIERTRDVYRECLKLIPHSKFS----FAKIWLLAA 430

Query:   299 EMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
             + E+   N+   R++    +  +P++   + KY E+E  L   +R R ++E
Sbjct:   431 QFEIRQLNLTGARQILGNAIGKAPKD-KIFKKYIEIELQLGNMDRCRKLYE 480

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006396 "RNA processing" evidence=IEA;ISS

TAIR|locus:2161363 AT5G45990 [Arabidopsis thaliana (taxid:3702)]

 Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
 Identities = 209/352 (59%), Positives = 262/352 (74%)

Query:     1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
             F+++ RN WDR VTL PRVDQLW  YI MEE LGNV GARQIFERWM+W PD + WL +I
Sbjct:   127 FVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGARQIFERWMNWSPDQKAWLCFI 186

Query:    61 KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG-EVDRARNVYECAVEIFLA 119
             KF+LRYNE++RAR I+ER V CHP  +SA+I +A FEMK G +V  AR VYE AV+  LA
Sbjct:   187 KFELRYNEIERARSIYERFVLCHP-KVSAFIRYAKFEMKRGGQVKLAREVYERAVDK-LA 244

Query:   120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179
             +D +EAE LFV+FA+FEE    CKE +RAR IYKFALD I KGRAE+LY+KF+AFEKQYG
Sbjct:   245 ND-EEAEILFVSFAEFEE---RCKEVERARFIYKFALDHIRKGRAEELYKKFVAFEKQYG 300

Query:   180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
             D+EGIEDAI GK R +YED V KNP+NYD+WFDY+RLEE VGN++R+RE+YERAIANVPP
Sbjct:   301 DKEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPP 360

Query:   240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF--IFYFSFSPRMEERRIFKKY 297
             A+EKR+WQRYIYLWINYALY+E++  D+ERTRDVYR     I +  FS      +I+   
Sbjct:   361 AQEKRFWQRYIYLWINYALYEEIETKDVERTRDVYRECLKLIPHTKFS----FAKIWLLA 416

Query:   298 IEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
              E E+   N+   R++    +  +P+    + KY E+E  L   +R R ++E
Sbjct:   417 AEYEIRQLNLTGARQILGNAIGKAPK-VKIFKKYIEMELKLVNIDRCRKLYE 467

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006396 "RNA processing" evidence=IEA;ISS

GO:0006397 "mRNA processing" evidence=IEA

TAIR|locus:2080853 AT3G51110 [Arabidopsis thaliana (taxid:3702)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 179/274 (65%), Positives = 223/274 (81%)

Query:     2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
             ++H RN WDR V + PRVDQ W  YI MEE LGN+ GAR+IFERWM W PD + WL +IK
Sbjct:   122 VNHARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSPDQQAWLCFIK 181

Query:    62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
             F+LRYNE++R+R I+ER V CHP   S++I +A FEMK  +V  AR VYE A+E+ L D 
Sbjct:   182 FELRYNEIERSRSIYERFVLCHP-KASSFIRYAKFEMKNSQVSLARIVYERAIEM-LKDV 239

Query:   122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
              +EAE +FVAFA+FEE+   CKE +RAR +YK+ALD IPKGRAEDLY+KF+AFEKQYG++
Sbjct:   240 EEEAEMIFVAFAEFEEL---CKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNK 296

Query:   182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
             EGI+DAI G+ +LQYE  VRKNP+NYD+WFDYI LEE +G+++R+REVYERAIANVP AE
Sbjct:   297 EGIDDAIVGRRKLQYEGEVRKNPLNYDSWFDYISLEETLGDKDRIREVYERAIANVPLAE 356

Query:   242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR 275
             EKRYWQRYIYLWI+YAL++E+ A D+ERTR VYR
Sbjct:   357 EKRYWQRYIYLWIDYALFEEILAEDVERTRAVYR 390

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006396 "RNA processing" evidence=IEA;ISS

TAIR|locus:2089999 AT3G13210 [Arabidopsis thaliana (taxid:3702)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 191/352 (54%), Positives = 247/352 (70%)

Query:     2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
             ++  RN WDR V+L PRVDQLW  +I MEE LGN+AGARQI ERW+H  PD + WL +IK
Sbjct:   107 VNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERWIHCSPDQQAWLCFIK 166

Query:    62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
             F+L+YNE++ AR I+ER V CHP  +SA+I +A FEMK G+V+ A  V+E A +  LADD
Sbjct:   167 FELKYNEIECARSIYERFVLCHP-KVSAYIRYAKFEMKHGQVELAMKVFERAKKE-LADD 224

Query:   122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
              +EAE LFVAFA+FEE              YKFALD+IPKGRAE+LY KF+AFEKQ GD+
Sbjct:   225 -EEAEILFVAFAEFEEQ-------------YKFALDQIPKGRAENLYSKFVAFEKQNGDK 270

Query:   182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP-- 239
             EGIEDAI GK R QYED VRKNP+NYD+WFD++RLEE VGN++R+RE+YERA+ANVPP  
Sbjct:   271 EGIEDAIIGKRRCQYEDEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPE 330

Query:   240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF--IFYFSFSPRMEERRIFKKY 297
             A+EKRYWQRYIYLWINYA + E+   D+E TRDVYR     I +  FS      +I+   
Sbjct:   331 AQEKRYWQRYIYLWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFS----FAKIWLLA 386

Query:   298 IEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
              + E+   N+   R++    +  +P++   + KY E+E  L   +R R ++E
Sbjct:   387 AQHEIRQLNLTGARQILGNAIGKAPKD-KIFKKYIEIELQLRNIDRCRKLYE 437

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006396 "RNA processing" evidence=IEA;ISS

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|J9P5Z1 CRNKL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 178/349 (51%), Positives = 230/349 (65%)

Query:     2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
             ++H RN WDR +T  PRV+Q W  Y  MEE LGN+AGARQ+FERWM W P+ + W SYI 
Sbjct:   172 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQAWHSYIN 231

Query:    62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
             F+LRY EV RAR I+ER V  HP ++  WI +A FE K G    AR VYE AVE F  D+
Sbjct:   232 FELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKHGYFAHARKVYERAVEFF-GDE 289

Query:   122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
             H + E L+VAFAKFEE   N KE +R R IYK+ALDRI K  A++L++ +  FEK++GDR
Sbjct:   290 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDR 345

Query:   182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
              GIED I  K R QYE+ V+ NP NYD WFDY+RL E     E VREVYERAIANVPP +
Sbjct:   346 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPIQ 405

Query:   242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFKKYIEM 300
             EKR+W+RYIYLW+NYALY+E++A D ERTR VY+ +L +       +    +++  Y + 
Sbjct:   406 EKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWLLYAQF 462

Query:   301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
             E+   N+   R+     +   P+N   +  Y ELE  L E +R R ++E
Sbjct:   463 EIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYE 510

GO:0006396 "RNA processing" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q5JY65 CRNKL1 "Crooked neck-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 179/349 (51%), Positives = 229/349 (65%)

Query:     2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
             ++H RN WDR +T  PRV+Q W  Y  MEE LGNVAGARQ+FERWM W P+ + W SYI 
Sbjct:   280 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 339

Query:    62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
             F+LRY EV RAR I+ER V  HP ++  WI +A FE K      AR VYE AVE F  D+
Sbjct:   340 FELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKHAYFAHARKVYERAVEFF-GDE 397

Query:   122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
             H + E L+VAFAKFEE   N KE +R R IYK+ALDRI K  A++L++ +  FEK++GDR
Sbjct:   398 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDR 453

Query:   182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
              GIED I  K R QYE+ V+ NP NYD WFDY+RL E     E VREVYERAIANVPP +
Sbjct:   454 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQ 513

Query:   242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFKKYIEM 300
             EKR+W+RYIYLWINYALY+E++A D ERTR VY+ +L +       +    +++  Y + 
Sbjct:   514 EKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWILYAQF 570

Query:   301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
             E+   N+   R+     +   P+N   +  Y ELE  L E +R R ++E
Sbjct:   571 EIRQKNLSLARRALGTSIGKCPKN-KLFKVYIELELQLREFDRCRKLYE 618

GO:0005622 "intracellular" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

UNIPROTKB|Q9BZJ0 CRNKL1 "Crooked neck-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
 Identities = 179/349 (51%), Positives = 229/349 (65%)

Query:     2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
             ++H RN WDR +T  PRV+Q W  Y  MEE LGNVAGARQ+FERWM W P+ + W SYI 
Sbjct:   292 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 351

Query:    62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
             F+LRY EV RAR I+ER V  HP ++  WI +A FE K      AR VYE AVE F  D+
Sbjct:   352 FELRYKEVDRARTIYERFVLVHP-DVKNWIKYARFEEKHAYFAHARKVYERAVEFF-GDE 409

Query:   122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
             H + E L+VAFAKFEE   N KE +R R IYK+ALDRI K  A++L++ +  FEK++GDR
Sbjct:   410 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDR 465

Query:   182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
              GIED I  K R QYE+ V+ NP NYD WFDY+RL E     E VREVYERAIANVPP +
Sbjct:   466 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQ 525

Query:   242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFKKYIEM 300
             EKR+W+RYIYLWINYALY+E++A D ERTR VY+ +L +       +    +++  Y + 
Sbjct:   526 EKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWILYAQF 582

Query:   301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
             E+   N+   R+     +   P+N   +  Y ELE  L E +R R ++E
Sbjct:   583 EIRQKNLSLARRALGTSIGKCPKN-KLFKVYIELELQLREFDRCRKLYE 630

GO:0005737 "cytoplasm" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0000245 "spliceosomal complex assembly" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

MGI|MGI:1914127 Crnkl1 "Crn, crooked neck-like 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 177/349 (50%), Positives = 229/349 (65%)

Query:     2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
             ++H RN WDR +T  PRV+Q W  Y  MEE LGNVAGARQ+FERWM W P+ + W SYI 
Sbjct:   131 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 190

Query:    62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
             F+LRY EV+RAR I+ER V  HP  +  WI +A FE K      AR VYE AVE F  D+
Sbjct:   191 FELRYKEVERARTIYERFVLVHPA-VKNWIKYARFEEKHAYFAHARKVYERAVEFF-GDE 248

Query:   122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
             H + E L+VAFAKFEE   N KE +R R IYK+ALDRI K  A++L++ +  FEK++GDR
Sbjct:   249 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDR 304

Query:   182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
              GIED I  K R QYE+ V+ NP NYD WFDY+RL E     + VREVYERAIANVPP +
Sbjct:   305 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQ 364

Query:   242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFKKYIEM 300
             EKR+W+RYIYLW+NYALY+E++A D ERTR VY+ +L +       +    +++  Y + 
Sbjct:   365 EKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWLYYAQF 421

Query:   301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
             E+   N+   R+     +   P+N   +  Y ELE  L E +R R ++E
Sbjct:   422 EIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYE 469

GO:0000245 "spliceosomal complex assembly" evidence=ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0006396 "RNA processing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

RGD|620507 Crnkl1 "crooked neck pre-mRNA splicing factor-like 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 177/349 (50%), Positives = 229/349 (65%)

Query:     2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
             ++H RN WDR +T  PRV+Q W  Y  MEE LGNVAGARQ+FERWM W P+ + W SYI 
Sbjct:   131 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYIN 190

Query:    62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
             F+LRY EV+RAR I+ER V  HP  +  WI +A FE K      AR VYE AVE F  D+
Sbjct:   191 FELRYKEVERARTIYERFVLVHPA-VKNWIKYARFEEKHAYFAHARKVYERAVEFF-GDE 248

Query:   122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
             H + E L+VAFAKFEE   N KE +R R IYK+ALDRI K  A++L++ +  FEK++GDR
Sbjct:   249 HMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDR 304

Query:   182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
              GIED I  K R QYE+ V+ NP NYD WFDY+RL E     + VREVYERAIANVPP +
Sbjct:   305 RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQ 364

Query:   242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFKKYIEM 300
             EKR+W+RYIYLW+NYALY+E++A D ERTR VY+ +L +       +    +++  Y + 
Sbjct:   365 EKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWLYYAQF 421

Query:   301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
             E+   N+   R+     +   P+N   +  Y ELE  L E +R R ++E
Sbjct:   422 EIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYE 469

GO:0000245 "spliceosomal complex assembly" evidence=ISO;ISS

GO:0003723 "RNA binding" evidence=ISO;ISS

GO:0005681 "spliceosomal complex" evidence=ISO;ISS

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

UNIPROTKB|F1MZT2 CRNKL1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 180/353 (50%), Positives = 231/353 (65%)

Query:     2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
             ++H RN WDR +T  PRV+Q W  Y  MEE LGN+AGARQ+FERWM W P+ + W SYI 
Sbjct:   215 VNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWRPEEQAWHSYIN 274

Query:    62 FKLRYNEVQRARHIFER----LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF 117
             F+LRY EV RAR I+ER    LV  HP ++  WI +A FE K G    AR VYE AVE F
Sbjct:   275 FELRYKEVDRARTIYERYIHSLVLVHP-DVKNWIKYARFEEKHGYFAHARKVYERAVEFF 333

Query:   118 LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ 177
               D+H + E L+VAFAKFEE   N KE +R R IYK+ALDRI K  A++L++ +  FEK+
Sbjct:   334 -GDEHMD-EHLYVAFAKFEE---NQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKK 388

Query:   178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANV 237
             +GDR GIED I  K R QYE+ V+ NP NYD WFDY+RL E     E VREVYERAIANV
Sbjct:   389 FGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANV 448

Query:   238 PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR-TLFIFYFSFSPRMEERRIFKK 296
             PP +EKR+W+RYIYLWINYALY+E++A D ERTR VY+ +L +       +    +++  
Sbjct:   449 PPVQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIPHK---KFTFAKMWLL 505

Query:   297 YIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFE 349
             Y + E+   N+   R+     +   P+N   +  Y ELE  L E +R R ++E
Sbjct:   506 YAQFEIRQKNLPFARRALGTSIGKCPKN-KLFKGYIELELQLREFDRCRKLYE 557

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000245 "spliceosomal complex assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	365
smart00386	33	smart00386, HAT, HAT (Half-A-TPR) repeats	0.002
smart00386	33	smart00386, HAT, HAT (Half-A-TPR) repeats	0.004

>gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 11/33 (33%), Positives = 23/33 (69%)

Query: 67 NEVQRARHIFERLVQCHPYNLSAWINFADFEMK 99
           +++RAR I+ER ++  P ++  W+ +A+FE +
Sbjct: 1  GDIERARKIYERALEKFPKSVELWLKYAEFEER 33

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. Length = 33

>gnl|CDD|214642 smart00386, HAT, HAT (Half-A-TPR) repeats

 Score = 34.1 bits (79), Expect = 0.004
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 221 GNQERVREVYERAIANVPPAEEKRYWQRYIYLWIN 255
           G+ ER R++YERA+   P + E   W +Y      
Sbjct: 1   GDIERARKIYERALEKFPKSVE--LWLKYAEFEER 33

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	365
KOG1915	677	consensus Cell cycle control protein (crooked neck	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	100.0
KOG1915	677	consensus Cell cycle control protein (crooked neck	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG0495	913	consensus HAT repeat protein [RNA processing and m	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.97
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.95
KOG2076	895	consensus RNA polymerase III transcription factor	99.95
KOG1126	638	consensus DNA-binding cell division cycle control	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
KOG1126	638	consensus DNA-binding cell division cycle control	99.94
PRK14574	822	hmsH outer membrane protein; Provisional	99.94
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.94
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.94
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.94
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.93
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.93
PLN03218	1060	maturation of RBCL 1; Provisional	99.93
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.93
PLN03218	1060	maturation of RBCL 1; Provisional	99.93
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.93
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.93
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.92
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.92
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.92
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.92
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.91
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.91
PLN03077	857	Protein ECB2; Provisional	99.91
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.91
PRK14574	822	hmsH outer membrane protein; Provisional	99.9
KOG2076	895	consensus RNA polymerase III transcription factor	99.9
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.9
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.89
PLN03077	857	Protein ECB2; Provisional	99.89
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.89
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.89
PRK12370	553	invasion protein regulator; Provisional	99.88
KOG1129	478	consensus TPR repeat-containing protein [General f	99.88
PRK11189	296	lipoprotein NlpI; Provisional	99.88
KOG1129	478	consensus TPR repeat-containing protein [General f	99.88
PRK12370	553	invasion protein regulator; Provisional	99.87
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.87
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.87
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.87
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.87
PRK11189	296	lipoprotein NlpI; Provisional	99.86
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.86
KOG1125	579	consensus TPR repeat-containing protein [General f	99.85
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.85
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.84
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.84
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.84
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.83
KOG2003	840	consensus TPR repeat-containing protein [General f	99.83
KOG2003	840	consensus TPR repeat-containing protein [General f	99.82
KOG1125	579	consensus TPR repeat-containing protein [General f	99.82
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.81
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.81
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.79
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.79
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.79
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.78
PLN02789	320	farnesyltranstransferase	99.78
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.77
PLN02789	320	farnesyltranstransferase	99.77
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.76
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.76
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.75
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.75
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.72
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.72
KOG1258	577	consensus mRNA processing protein [RNA processing	99.71
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.7
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	99.7
PRK15359	144	type III secretion system chaperone protein SscB;	99.7
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.69
KOG1258	577	consensus mRNA processing protein [RNA processing	99.69
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.68
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.68
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.67
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	99.66
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.65
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.65
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.65
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.62
PRK15359	144	type III secretion system chaperone protein SscB;	99.61
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.61
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.58
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.58
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.57
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.56
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.55
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.55
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.54
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.53
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	99.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.49
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.48
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	99.47
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.46
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.43
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	99.43
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.43
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.42
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	99.41
KOG0553	304	consensus TPR repeat-containing protein [General f	99.41
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	99.41
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.4
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.38
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.36
PRK04841	903	transcriptional regulator MalT; Provisional	99.36
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.33
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.33
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.32
PRK04841	903	transcriptional regulator MalT; Provisional	99.32
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.31
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.3
KOG0553	304	consensus TPR repeat-containing protein [General f	99.26
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.25
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.24
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.22
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.22
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.21
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.2
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.2
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.19
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.18
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.18
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.18
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.17
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.17
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.16
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.15
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.14
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.14
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.12
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.11
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.11
COG3898	531	Uncharacterized membrane-bound protein [Function u	99.11
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.11
PRK11906	458	transcriptional regulator; Provisional	99.09
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.08
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.08
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.08
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.07
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.06
PRK10803	263	tol-pal system protein YbgF; Provisional	99.04
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.04
PF12688	120	TPR_5: Tetratrico peptide repeat	99.03
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.02
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.02
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.01
PRK11906	458	transcriptional regulator; Provisional	99.01
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	99.0
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.0
PRK15331	165	chaperone protein SicA; Provisional	98.99
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.99
PRK10803	263	tol-pal system protein YbgF; Provisional	98.95
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.95
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.94
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.92
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.91
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.9
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	98.87
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.87
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.85
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.85
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.84
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.84
PF13371	73	TPR_9: Tetratricopeptide repeat	98.8
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.79
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.78
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.78
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.77
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.76
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.76
PRK15331	165	chaperone protein SicA; Provisional	98.75
PF13371	73	TPR_9: Tetratricopeptide repeat	98.74
PF12688	120	TPR_5: Tetratrico peptide repeat	98.73
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.7
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.7
KOG2471	696	consensus TPR repeat-containing protein [General f	98.68
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.68
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.67
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.66
KOG4507	886	consensus Uncharacterized conserved protein, conta	98.66
PF13512	142	TPR_18: Tetratricopeptide repeat	98.66
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.61
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.59
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.59
KOG4234	271	consensus TPR repeat-containing protein [General f	98.57
PF13512	142	TPR_18: Tetratricopeptide repeat	98.56
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	98.55
PF13428	44	TPR_14: Tetratricopeptide repeat	98.53
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.52
PF13428	44	TPR_14: Tetratricopeptide repeat	98.51
KOG4555	175	consensus TPR repeat-containing protein [Function	98.43
KOG4555	175	consensus TPR repeat-containing protein [Function	98.42
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.42
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.4
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.4
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.36
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.36
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.32
PF13431	34	TPR_17: Tetratricopeptide repeat	98.31
KOG4234	271	consensus TPR repeat-containing protein [General f	98.31
PF13431	34	TPR_17: Tetratricopeptide repeat	98.3
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.28
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.28
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.26
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.26
KOG1586	288	consensus Protein required for fusion of vesicles	98.25
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.25
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.23
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.22
KOG1585	308	consensus Protein required for fusion of vesicles	98.14
KOG1586	288	consensus Protein required for fusion of vesicles	98.13
KOG1585	308	consensus Protein required for fusion of vesicles	98.12
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	98.06
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.04
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.02
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.01
COG5191	435	Uncharacterized conserved protein, contains HAT (H	98.0
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.97
KOG2471	696	consensus TPR repeat-containing protein [General f	97.96
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.96
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.91
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.91
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	97.89
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.87
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.86
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.85
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.83
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.81
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.81
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.8
COG5191	435	Uncharacterized conserved protein, contains HAT (H	97.79
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.77
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.74
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.74
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.72
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.7
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.68
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.59
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.58
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.56
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	97.56
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	97.56
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.53
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	97.53
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.52
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.49
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.49
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.45
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.44
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.41
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.37
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.34
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.34
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.3
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.3
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.28
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.23
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	97.2
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.15
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	97.14
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	97.12
PF02184	32	HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107	97.1
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.03
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.97
COG1747	711	Uncharacterized N-terminal domain of the transcrip	96.91
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.91
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.83
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	96.83
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.83
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.78
smart00777	125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	96.75
KOG2422	665	consensus Uncharacterized conserved protein [Funct	96.73
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.7
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.67
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.66
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.66
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.66
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.66
PRK10941	269	hypothetical protein; Provisional	96.65
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.62
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.61
smart00777	125	Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region	96.5
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.49
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.38
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.34
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.28
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.21
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.2
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.16
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.11
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.09
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.08
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.07
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.07
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.05
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.92
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.9
PRK10941	269	hypothetical protein; Provisional	95.89
PF13041	50	PPR_2: PPR repeat family	95.86
PF13041	50	PPR_2: PPR repeat family	95.68
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.68
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.53
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.41
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	95.29
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.16
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.99
KOG3364	149	consensus Membrane protein involved in organellar	94.97
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.97
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.9
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.84
COG4941	415	Predicted RNA polymerase sigma factor containing a	94.78
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	94.7
PF12854	34	PPR_1: PPR repeat	94.62
PF12854	34	PPR_1: PPR repeat	94.45
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.44
KOG2422	665	consensus Uncharacterized conserved protein [Funct	94.42
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.39
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.32
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.23
KOG3783	546	consensus Uncharacterized conserved protein [Funct	94.17
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.13
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.85
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.75
COG3947	361	Response regulator containing CheY-like receiver a	93.49
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.16
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.16
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	93.03
KOG1310	758	consensus WD40 repeat protein [General function pr	93.03
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.99
KOG4814	872	consensus Uncharacterized conserved protein [Funct	92.96
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.89
KOG3364	149	consensus Membrane protein involved in organellar	92.76
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.47
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.28
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	92.25
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	92.19
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	92.17
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	92.01
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.0
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.79
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.69
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.53
COG3947	361	Response regulator containing CheY-like receiver a	91.5
smart00299	140	CLH Clathrin heavy chain repeat homology.	91.27
KOG1310	758	consensus WD40 repeat protein [General function pr	91.07
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.06
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.06
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	90.86
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	90.8
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	90.47
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	90.03
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.65
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.27
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	89.25
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.04
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.82
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	88.81
COG2912	269	Uncharacterized conserved protein [Function unknow	88.52
COG2912	269	Uncharacterized conserved protein [Function unknow	88.0
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	87.91
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	87.88
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.88
COG1747	711	Uncharacterized N-terminal domain of the transcrip	87.86
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	87.52
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	87.24
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	87.12
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	86.69
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	86.61
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.57
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.54
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.47
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	86.36
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	85.71
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	85.62
PF13812	34	PPR_3: Pentatricopeptide repeat domain	85.2
TIGR02996	42	rpt_mate_G_obs repeat-companion domain TIGR02996.	85.15
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	84.7
PF13812	34	PPR_3: Pentatricopeptide repeat domain	84.3
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	84.05
KOG3783	546	consensus Uncharacterized conserved protein [Funct	83.97
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	83.89
KOG0687	393	consensus 26S proteasome regulatory complex, subun	83.88
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	83.79
PF15297	353	CKAP2_C: Cytoskeleton-associated protein 2 C-termi	82.73
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	82.57
TIGR02996	42	rpt_mate_G_obs repeat-companion domain TIGR02996.	82.48
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.26
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	82.25
KOG0529	421	consensus Protein geranylgeranyltransferase type I	80.48
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	80.32
KOG1811	1141	consensus Predicted Zn2+-binding protein, contains	80.25

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-48  Score=314.17  Aligned_cols=358  Identities=67%  Similarity=1.194  Sum_probs=338.7

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      +..|+.++.+++.+.|....+|+.+..+....|++..|+++|++.++..|+..+|..++++..+.++.+.|+.+|++.+-
T Consensus       123 vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~  202 (677)
T KOG1915|consen  123 VNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL  202 (677)
T ss_pred             HhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence            46788888888888888888899998888899999999999999999999999999999999999999999999999999


Q ss_pred             hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703           82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus        82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                      .+| +...|+.++.+..+.|+...|+.+|++|++. .+++ .....++..+|.+..   .++.++.|+-+|+-||...|.
T Consensus       203 ~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~-~~~d-~~~e~lfvaFA~fEe---~qkE~ERar~iykyAld~~pk  276 (677)
T KOG1915|consen  203 VHP-KVSNWIKYARFEEKHGNVALARSVYERAIEF-LGDD-EEAEILFVAFAEFEE---RQKEYERARFIYKYALDHIPK  276 (677)
T ss_pred             ecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-hhhH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCc
Confidence            999 8999999999999999999999999999999 8876 666888999999999   999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703          162 GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE  241 (365)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  241 (365)
                      +....++..+..++.+.|+..++++.++.+.+-.|++.+..+|.|.++|+.+..+....|+.+..++.|++|+...|+..
T Consensus       277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~  356 (677)
T KOG1915|consen  277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS  356 (677)
T ss_pred             ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh
Confidence            88788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc----cCCCcc---------------------------hh
Q 036703          242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF----SFSPRM---------------------------EE  290 (365)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~----~~~~~~---------------------------~~  290 (365)
                      ++..|++|+.+|++|+.+.++...+.+.++.+|+.++++-|    +++.+|                           |.
T Consensus       357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK  436 (677)
T KOG1915|consen  357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK  436 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc
Confidence            99999999999999999999999999999999999999844    455566                           88


Q ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCccccC
Q 036703          291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLWK  365 (365)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~~~~  365 (365)
                      +.++..|+.++.+.++++.++++|++-++..|.+..+|..++.++..+|+.+.|+.+|+-|+++...|+|+.+||
T Consensus       437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk  511 (677)
T KOG1915|consen  437 DKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK  511 (677)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999997

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-39  Score=270.21  Aligned_cols=326  Identities=18%  Similarity=0.186  Sum_probs=264.2

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hH-------------------------
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HE-------------------------   54 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~-------------------------   54 (365)
                      ++++|+.+|+.++++.|+..++|+.+|.++...|+.+.|.+.|..+++++|+ ..                         
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA  210 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA  210 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence            3678999999999999999999999999999988888888888888888875 22                         


Q ss_pred             ---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhH
Q 036703           55 ---------GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA  125 (365)
Q Consensus        55 ---------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  125 (365)
                               +|..++.....+|+...|++.|++++.++|.-.++++.+|.+|...+.+++|+.+|.+|+.. .|..    
T Consensus       211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-rpn~----  285 (966)
T KOG4626|consen  211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-RPNH----  285 (966)
T ss_pred             HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-CCcc----
Confidence                     34444444445566666666666666666666666666666666666666666666666666 5555    


Q ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC
Q 036703          126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM  205 (365)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~  205 (365)
                      ..++-++|.+|.   .+|..+-|++.|+++++..|.-  .+.+..++......|+..        +|...|.++|..+|+
T Consensus       286 A~a~gNla~iYy---eqG~ldlAI~~Ykral~~~P~F--~~Ay~NlanALkd~G~V~--------ea~~cYnkaL~l~p~  352 (966)
T KOG4626|consen  286 AVAHGNLACIYY---EQGLLDLAIDTYKRALELQPNF--PDAYNNLANALKDKGSVT--------EAVDCYNKALRLCPN  352 (966)
T ss_pred             hhhccceEEEEe---ccccHHHHHHHHHHHHhcCCCc--hHHHhHHHHHHHhccchH--------HHHHHHHHHHHhCCc
Confidence            666666666666   8888888888888888887774  567777777777777743        688888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC
Q 036703          206 NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS  285 (365)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~  285 (365)
                      ++++..++|.++...|.++.|..+|.+++...|.-.         ....+++.++ .++|++++|+..|+.++++.    
T Consensus       353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a---------aa~nNLa~i~-kqqgnl~~Ai~~YkealrI~----  418 (966)
T KOG4626|consen  353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA---------AAHNNLASIY-KQQGNLDDAIMCYKEALRIK----  418 (966)
T ss_pred             cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh---------hhhhhHHHHH-HhcccHHHHHHHHHHHHhcC----
Confidence            888888888888888888888888888888888754         3677888888 59999999999999999998    


Q ss_pred             Ccchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCcc
Q 036703          286 PRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEF  362 (365)
Q Consensus       286 ~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~  362 (365)
                         |. .+.+.++|..+..+|+.+.|...|.+|+..+|...++..+++.++...|++.+|+..|+.++++.| |.|+.
T Consensus       419 ---P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP-DfpdA  492 (966)
T KOG4626|consen  419 ---PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP-DFPDA  492 (966)
T ss_pred             ---chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC-CCchh
Confidence               55 667899999999999999999999999999999999999999999999999999999999999999 88875

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=3e-39  Score=268.42  Aligned_cols=328  Identities=15%  Similarity=0.146  Sum_probs=277.5

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      +....--..+++..|.-.+++..+|.++...|+++.|+..|+.++++.|+ .++|..++.++...|+.+.|...|..+++
T Consensus        99 d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq  178 (966)
T KOG4626|consen   99 DKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ  178 (966)
T ss_pred             hhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence            44455556788999999999999999999999999999999999999999 89999999999999999999999999999


Q ss_pred             hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703           82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus        82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                      ++|+...+...+|.+....|+.++|..+|.+|++. .|.-    .-+|.++|.++.   .+|+...|+..|+++++..|.
T Consensus       179 lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~-qp~f----AiawsnLg~~f~---~~Gei~~aiq~y~eAvkldP~  250 (966)
T KOG4626|consen  179 LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET-QPCF----AIAWSNLGCVFN---AQGEIWLAIQHYEEAVKLDPN  250 (966)
T ss_pred             cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh-CCce----eeeehhcchHHh---hcchHHHHHHHHHHhhcCCCc
Confidence            99988888888888888889888888888888888 7664    778888888888   888888888888888888777


Q ss_pred             chhHHHHHHHHHHHHHcCCchhhhH--------------------------HHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 036703          162 GRAEDLYRKFLAFEKQYGDREGIED--------------------------AIAGKMRLQYEDGVRKNPMNYDTWFDYIR  215 (365)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~a~~~~~~~l~~~p~~~~~~~~~~~  215 (365)
                      -  .+.|..++..+...+.+++.-.                          -.++.|+..|++++...|+.++++.+++.
T Consensus       251 f--~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nlan  328 (966)
T KOG4626|consen  251 F--LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLAN  328 (966)
T ss_pred             c--hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHH
Confidence            4  5666666666665554443211                          12367888888888888988888988988


Q ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHH
Q 036703          216 LEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFK  295 (365)
Q Consensus       216 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~  295 (365)
                      .+...|+..+|..+|.+++..+|..++         ...+++..+ ..+|.++.|..+|.+++...|..      ...+.
T Consensus       329 ALkd~G~V~ea~~cYnkaL~l~p~had---------am~NLgni~-~E~~~~e~A~~ly~~al~v~p~~------aaa~n  392 (966)
T KOG4626|consen  329 ALKDKGSVTEAVDCYNKALRLCPNHAD---------AMNNLGNIY-REQGKIEEATRLYLKALEVFPEF------AAAHN  392 (966)
T ss_pred             HHHhccchHHHHHHHHHHHHhCCccHH---------HHHHHHHHH-HHhccchHHHHHHHHHHhhChhh------hhhhh
Confidence            888889999999999999988888754         677788887 68889999999999999888332      55668


Q ss_pred             HHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          296 KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       296 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      +++.++.+.|++++|+.+|+.++.+.|+..+.+.++++.+...|+.+.|...|.+|+..+|
T Consensus       393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP  453 (966)
T KOG4626|consen  393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP  453 (966)
T ss_pred             hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence            8899999999999999999999999999999999999999999999999999999998887

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=100.00  E-value=4.2e-35  Score=244.96  Aligned_cols=328  Identities=20%  Similarity=0.331  Sum_probs=310.0

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      ++-|+.+|..+++.+|....+|...+.+....|..+.-..++++++...|. +.+|++++......||...|+.++.+++
T Consensus       532 ~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af  611 (913)
T KOG0495|consen  532 IECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAF  611 (913)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            466899999999999999999999999999999999999999999999999 7899999999999999999999999999


Q ss_pred             HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      +.+|++.++|+....++....++++|+.+|.++... .|.     ..+|+..+.++.   .+++.++|+++++++++..|
T Consensus       612 ~~~pnseeiwlaavKle~en~e~eraR~llakar~~-sgT-----eRv~mKs~~~er---~ld~~eeA~rllEe~lk~fp  682 (913)
T KOG0495|consen  612 EANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-SGT-----ERVWMKSANLER---YLDNVEEALRLLEEALKSFP  682 (913)
T ss_pred             HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-CCc-----chhhHHHhHHHH---HhhhHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999988 665     899999999999   99999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      .-  ..+|+..++++.+.++.        +.|+..|...++.+|+++.+|..++.+....|...+|+.+++++.-.+|.+
T Consensus       683 ~f--~Kl~lmlGQi~e~~~~i--------e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~  752 (913)
T KOG0495|consen  683 DF--HKLWLMLGQIEEQMENI--------EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN  752 (913)
T ss_pred             ch--HHHHHHHhHHHHHHHHH--------HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence            85  78999999999998874        479999999999999999999999999999999999999999999999998


Q ss_pred             hhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc------------------------hhHHHHHH
Q 036703          241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM------------------------EERRIFKK  296 (365)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~------------------------~~~~~~~~  296 (365)
                      ..         +|+...+++ .+.|..+.|.....+|++..|+.+.+|                        .++.+...
T Consensus       753 ~~---------lwle~Ir~E-lR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVlla  822 (913)
T KOG0495|consen  753 AL---------LWLESIRME-LRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLA  822 (913)
T ss_pred             ch---------hHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHH
Confidence            53         999999995 899999999999999999999999999                        34778888


Q ss_pred             HHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703          297 YIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       297 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                      .+.+.+...++++|++.|+++++.+|++.++|..+..++..+|..+.-.++|.++..-.|..
T Consensus       823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h  884 (913)
T KOG0495|consen  823 IAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH  884 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999888853

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.4e-34  Score=231.31  Aligned_cols=333  Identities=24%  Similarity=0.470  Sum_probs=295.6

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      |+..|+++|++.+...|+ ..+|..+..+.++...++.|+.+|++-+-.+|+...|+.++.+..++|+...|+.+|++|+
T Consensus       156 Ni~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi  234 (677)
T KOG1915|consen  156 NIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI  234 (677)
T ss_pred             ccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567899999999999999 8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC------------------------------------
Q 036703           81 QCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD------------------------------------  121 (365)
Q Consensus        81 ~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------------------------------  121 (365)
                      ..-.++   ..++...|.+...++.+++|+-+|+-|+.. .|.+                                    
T Consensus       235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~  313 (677)
T KOG1915|consen  235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEK  313 (677)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHH
Confidence            976654   567888999999999999999999999998 7765                                    


Q ss_pred             ----hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHH
Q 036703          122 ----HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYE  197 (365)
Q Consensus       122 ----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  197 (365)
                          ++.+...|..+..+..   ..|+.++.+++|++||...|.......|..|+.+.....-+.+++....+.++.+|+
T Consensus       314 ~v~~np~nYDsWfdylrL~e---~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq  390 (677)
T KOG1915|consen  314 EVSKNPYNYDSWFDYLRLEE---SVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ  390 (677)
T ss_pred             HHHhCCCCchHHHHHHHHHH---hcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                2223467888888888   899999999999999999998766778888888887777777766666779999999


Q ss_pred             HHHHcCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHH
Q 036703          198 DGVRKNPMN----YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDV  273 (365)
Q Consensus       198 ~~l~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  273 (365)
                      .++.+-|..    ..+|+.++.+..++.+...|++++..++..+|.+.          +...|+.+. .+.++++.++.+
T Consensus       391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K----------lFk~YIelE-lqL~efDRcRkL  459 (677)
T KOG1915|consen  391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK----------LFKGYIELE-LQLREFDRCRKL  459 (677)
T ss_pred             HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh----------HHHHHHHHH-HHHhhHHHHHHH
Confidence            999999975    57999999999999999999999999999999974          556666664 789999999999


Q ss_pred             HHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch--HHHHHHHHHHHhhccchhHHHHHHHH
Q 036703          274 YRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN--CYAWSKYTELEKSLDETERARAIFEL  350 (365)
Q Consensus       274 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~  350 (365)
                      |++-+...       |. ...|..+|.++..+|+.+.|+.+|+-|++...-+  ..+|-.|+.++...|.+++|+.+|++
T Consensus       460 YEkfle~~-------Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYer  532 (677)
T KOG1915|consen  460 YEKFLEFS-------PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYER  532 (677)
T ss_pred             HHHHHhcC-------hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHH
Confidence            99999988       44 7788999999999999999999999998764222  35899999999999999999999999


Q ss_pred             HhcCcC
Q 036703          351 AIAQPI  356 (365)
Q Consensus       351 a~~~~~  356 (365)
                      .++..+
T Consensus       533 lL~rt~  538 (677)
T KOG1915|consen  533 LLDRTQ  538 (677)
T ss_pred             HHHhcc
Confidence            998776

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.8e-33  Score=254.82  Aligned_cols=327  Identities=14%  Similarity=0.116  Sum_probs=269.6

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHH---
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIF---   76 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~---   76 (365)
                      +|++|+..|++++...|+ +..|..+|.++...|++++|+..+.++++.+|+ ..+|..++.++...|++++|+..|   
T Consensus       142 ~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~  220 (615)
T TIGR00990       142 DFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS  220 (615)
T ss_pred             CHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            478888899999988886 678888888898889999999999999988888 678888887777777766665433   


Q ss_pred             --------------------------------------------------------------------------------
Q 036703           77 --------------------------------------------------------------------------------   76 (365)
Q Consensus        77 --------------------------------------------------------------------------------   76 (365)
                                                                                                      
T Consensus       221 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  300 (615)
T TIGR00990       221 CIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLK  300 (615)
T ss_pred             HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHH
Confidence                                                                                            


Q ss_pred             -----------------HHHHHh---CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703           77 -----------------ERLVQC---HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE  136 (365)
Q Consensus        77 -----------------~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  136 (365)
                                       ++++..   .|....++..+|.++...|++++|+..|+++++. .|..    ...|..+|.++
T Consensus       301 ~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-~P~~----~~~~~~la~~~  375 (615)
T TIGR00990       301 SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-DPRV----TQSYIKRASMN  375 (615)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc----HHHHHHHHHHH
Confidence                             333322   2445566777888888889999999999999988 8877    88889999999


Q ss_pred             HhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 036703          137 EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRL  216 (365)
Q Consensus       137 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~  216 (365)
                      .   ..|++++|+..|+++++..|.+  ..++...+.++...|+.+        .|+..|++++..+|++..++..+|.+
T Consensus       376 ~---~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~--------~A~~~~~kal~l~P~~~~~~~~la~~  442 (615)
T TIGR00990       376 L---ELGDPDKAEEDFDKALKLNSED--PDIYYHRAQLHFIKGEFA--------QAGKDYQKSIDLDPDFIFSHIQLGVT  442 (615)
T ss_pred             H---HCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCccCHHHHHHHHHH
Confidence            8   8999999999999999988876  578888888888888865        69999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHH-HHH
Q 036703          217 EERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERR-IFK  295 (365)
Q Consensus       217 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~-~~~  295 (365)
                      +...|++++|+..|++++...|.++.         ++..++..+ ...|++++|+..|++++...|.....+.... ++.
T Consensus       443 ~~~~g~~~eA~~~~~~al~~~P~~~~---------~~~~lg~~~-~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~  512 (615)
T TIGR00990       443 QYKEGSIASSMATFRRCKKNFPEAPD---------VYNYYGELL-LDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN  512 (615)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHH-HHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence            99999999999999999999988754         677788887 6899999999999999999865433322211 222


Q ss_pred             HHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          296 KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       296 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      ..+.++...|++++|..++++++..+|++..++..++.++...|++++|+..|+++++..+
T Consensus       513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence            2233334579999999999999999999999999999999999999999999999998876

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=5.4e-33  Score=250.97  Aligned_cols=326  Identities=10%  Similarity=-0.006  Sum_probs=292.8

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      +++.|..+++.++...|+++.++..++......|++++|+..|++++..+|+ ...|..++.++...|++++|+..|+++
T Consensus        57 ~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~A  136 (656)
T PRK15174         57 ETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQA  136 (656)
T ss_pred             CcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3678999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  159 (365)
                      ++.+|+++.++..++.++...|++++|...+.+++.. .|++    +..+...+. +.   ..|++++|...++++++..
T Consensus       137 l~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-~P~~----~~a~~~~~~-l~---~~g~~~eA~~~~~~~l~~~  207 (656)
T PRK15174        137 WLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-VPPR----GDMIATCLS-FL---NKSRLPEDHDLARALLPFF  207 (656)
T ss_pred             HHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-CCCC----HHHHHHHHH-HH---HcCCHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999 8887    666665544 67   8999999999999999887


Q ss_pred             CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHH----HHHHHHHHHh
Q 036703          160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQER----VREVYERAIA  235 (365)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~----A~~~~~~~~~  235 (365)
                      |... .......+..+...|+.+        .|+..|++++..+|++..++..+|.++...|++++    |...|++++.
T Consensus       208 ~~~~-~~~~~~l~~~l~~~g~~~--------eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~  278 (656)
T PRK15174        208 ALER-QESAGLAVDTLCAVGKYQ--------EAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ  278 (656)
T ss_pred             CCcc-hhHHHHHHHHHHHCCCHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            6432 223334455666777755        69999999999999999999999999999999986    8999999999


Q ss_pred             cCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHH
Q 036703          236 NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLY  314 (365)
Q Consensus       236 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~  314 (365)
                      ..|++..         ++..++..+ ...|++++|+..+++++...       |+ +.++..++.++...|++++|+..|
T Consensus       279 l~P~~~~---------a~~~lg~~l-~~~g~~~eA~~~l~~al~l~-------P~~~~a~~~La~~l~~~G~~~eA~~~l  341 (656)
T PRK15174        279 FNSDNVR---------IVTLYADAL-IRTGQNEKAIPLLQQSLATH-------PDLPYVRAMYARALRQVGQYTAASDEF  341 (656)
T ss_pred             hCCCCHH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999753         788888887 69999999999999999998       54 677888999999999999999999


Q ss_pred             HHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703          315 EKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE  361 (365)
Q Consensus       315 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~  361 (365)
                      ++++..+|++...+...+.++...|+.++|...|+++++..|.+.|.
T Consensus       342 ~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~  388 (656)
T PRK15174        342 VQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQ  388 (656)
T ss_pred             HHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchh
Confidence            99999999988877778999999999999999999999999966554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.3e-31  Score=253.20  Aligned_cols=319  Identities=15%  Similarity=0.171  Sum_probs=158.1

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      ++|+..|+++++.+|++..++..++.++...|++++|+..|++++...|. ..++..++.++...|++++|...+++++.
T Consensus       482 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  561 (899)
T TIGR02917       482 AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE  561 (899)
T ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444444444 33444444444444444444444444444


Q ss_pred             hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703           82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus        82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                      .+|.+...+..++.++...|++++|+..++++++. .|.+    +.+|..++.++.   ..|++++|+..|+++++..|.
T Consensus       562 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~  633 (899)
T TIGR02917       562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDS----PEAWLMLGRAQL---AAGDLNKAVSSFKKLLALQPD  633 (899)
T ss_pred             hCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCC
Confidence            44444444444444444444444444444444444 4443    444555555555   555555555555555544444


Q ss_pred             chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703          162 GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE  241 (365)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  241 (365)
                      +  ...+..++..+...|+.+        +|...|+++++.+|++..++..++.++...|++++|..+++.+....|.+.
T Consensus       634 ~--~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  703 (899)
T TIGR02917       634 S--ALALLLLADAYAVMKNYA--------KAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAA  703 (899)
T ss_pred             C--hHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCh
Confidence            3  234444444444444433        355555555555555555555555555445555555555544444444432


Q ss_pred             hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703          242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS  321 (365)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  321 (365)
                      .         .+...+..+ ...|++++|+..|++++...       |+...+..++.++...|++++|...++++++.+
T Consensus       704 ~---------~~~~~~~~~-~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  766 (899)
T TIGR02917       704 L---------GFELEGDLY-LRQKDYPAAIQAYRKALKRA-------PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH  766 (899)
T ss_pred             H---------HHHHHHHHH-HHCCCHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            2         344445554 36667777777777766665       333344445555555555555555555555555


Q ss_pred             cchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          322 PENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       322 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      |+++.++..++.++...|+.++|...|+++++..|
T Consensus       767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  801 (899)
T TIGR02917       767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP  801 (899)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence            55555555555555555555555555555555554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3e-31  Score=253.51  Aligned_cols=319  Identities=18%  Similarity=0.159  Sum_probs=196.2

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      +++|...|++++..+|.+...+..++.++...|++++|...+++++...|. ...|..++.++...|++++|+..|++++
T Consensus       549 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  628 (899)
T TIGR02917       549 EEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL  628 (899)
T ss_pred             HHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            566777777777777777777777777777777777777777777776666 5677777777777777777777777777


Q ss_pred             HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      +.+|+++..+..++.++...|++++|...|+++++. .|.+    ...+..++.++.   ..|++++|..+++++....|
T Consensus       629 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~  700 (899)
T TIGR02917       629 ALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDN----TEAQIGLAQLLL---AAKRTESAKKIAKSLQKQHP  700 (899)
T ss_pred             HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCc
Confidence            777777777777777777777777777777777777 6665    666666666666   66666666666666665555


Q ss_pred             CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      ..  ...+...+..+...|+++        .|...|++++...|++ ..+..++.++...|++++|...+++++...|++
T Consensus       701 ~~--~~~~~~~~~~~~~~g~~~--------~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~  769 (899)
T TIGR02917       701 KA--ALGFELEGDLYLRQKDYP--------AAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND  769 (899)
T ss_pred             CC--hHHHHHHHHHHHHCCCHH--------HHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            43  344455555555555543        4555555555555555 445555555555555555555555555555554


Q ss_pred             hhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703          241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW  320 (365)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  320 (365)
                      ..         ++..++.++ ...|++++|+..|+++++..|      +++.++..++.++...|+ .+|+..+++++..
T Consensus       770 ~~---------~~~~la~~~-~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~  832 (899)
T TIGR02917       770 AV---------LRTALAELY-LAQKDYDKAIKHYRTVVKKAP------DNAVVLNNLAWLYLELKD-PRALEYAEKALKL  832 (899)
T ss_pred             HH---------HHHHHHHHH-HHCcCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence            32         444444444 355555555555555555542      114444555555555555 4555555555555


Q ss_pred             CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          321 SPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       321 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      .|+++.++..++.++...|++++|...|+++++..|
T Consensus       833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            555555555555555555555555555555555555

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=3.6e-31  Score=254.46  Aligned_cols=328  Identities=15%  Similarity=0.153  Sum_probs=254.2

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h--HHH------------HHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H--EGW------------LSYIKFKLR   65 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~------------~~~~~~~~~   65 (365)
                      ++++|+..|+++++.+|+++.++..+|.++.+.|++++|+..|+++++.+|+ .  ..|            ...+..+..
T Consensus       284 ~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~  363 (1157)
T PRK11447        284 QGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK  363 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999997 2  223            233667788


Q ss_pred             hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHh-------
Q 036703           66 YNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM-------  138 (365)
Q Consensus        66 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------  138 (365)
                      .|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++. .|.+    ..++..++.++..       
T Consensus       364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-~p~~----~~a~~~L~~l~~~~~~~~A~  438 (1157)
T PRK11447        364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM-DPGN----TNAVRGLANLYRQQSPEKAL  438 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHhcCHHHHH
Confidence            999999999999999999999999999999999999999999999999999 8887    5555555444320       


Q ss_pred             --------------------------------ccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhH
Q 036703          139 --------------------------------GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIED  186 (365)
Q Consensus       139 --------------------------------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (365)
                                                      ....|++++|+..|+++++..|.+  ..++..++.++...|+.+    
T Consensus       439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~--~~~~~~LA~~~~~~G~~~----  512 (1157)
T PRK11447        439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS--VWLTYRLAQDLRQAGQRS----  512 (1157)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH----
Confidence                                            004566666666666666666665  345555666666666644    


Q ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-------------------------------
Q 036703          187 AIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIA-------------------------------  235 (365)
Q Consensus       187 ~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------------------------------  235 (365)
                          +|+..++++++..|+++.+++.++.++...+++++|...++++..                               
T Consensus       513 ----~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        513 ----QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             ----HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence                466666666666666666666666555555555555555544321                               


Q ss_pred             ---------cCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhC
Q 036703          236 ---------NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLG  305 (365)
Q Consensus       236 ---------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  305 (365)
                               ..|.+         ..++..++.++ ...|++++|+..|++++...       |+ ++.+..++.++...|
T Consensus       589 ~~eA~~~l~~~p~~---------~~~~~~La~~~-~~~g~~~~A~~~y~~al~~~-------P~~~~a~~~la~~~~~~g  651 (1157)
T PRK11447        589 EAEAEALLRQQPPS---------TRIDLTLADWA-QQRGDYAAARAAYQRVLTRE-------PGNADARLGLIEVDIAQG  651 (1157)
T ss_pred             HHHHHHHHHhCCCC---------chHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCC
Confidence                     12222         12455677776 58899999999999999887       44 677888899999999


Q ss_pred             CCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCC
Q 036703          306 NIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLP  360 (365)
Q Consensus       306 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p  360 (365)
                      ++++|++.|+++++..|+++.++..++.++...|++++|..+|++++...|.+.|
T Consensus       652 ~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~  706 (1157)
T PRK11447        652 DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP  706 (1157)
T ss_pred             CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence            9999999999999888988888899999999999999999999999888774444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=7.2e-30  Score=230.77  Aligned_cols=313  Identities=11%  Similarity=0.007  Sum_probs=271.4

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      +++.|...|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+ ...|..++.++...|++++|...++++
T Consensus        91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~  170 (656)
T PRK15174         91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQ  170 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  159 (365)
                      +...|+++..+..++. +...|++++|+..++++++. .|..   .......++..+.   ..|++++|+..|++++...
T Consensus       171 ~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~-~~~~---~~~~~~~l~~~l~---~~g~~~eA~~~~~~al~~~  242 (656)
T PRK15174        171 AQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPF-FALE---RQESAGLAVDTLC---AVGKYQEAIQTGESALARG  242 (656)
T ss_pred             HHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc-CCCc---chhHHHHHHHHHH---HCCCHHHHHHHHHHHHhcC
Confidence            9999988888876644 77899999999999999988 7643   1344456678888   9999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 036703          160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP  239 (365)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  239 (365)
                      |.+  ...+..++..+...|+.++.    ..+|...|+++++.+|++..++..+|.++...|++++|...+++++...|.
T Consensus       243 p~~--~~~~~~Lg~~l~~~G~~~eA----~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~  316 (656)
T PRK15174        243 LDG--AALRRSLGLAYYQSGRSREA----KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD  316 (656)
T ss_pred             CCC--HHHHHHHHHHHHHcCCchhh----HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            886  67888889888888886531    124899999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHH
Q 036703          240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYL  318 (365)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al  318 (365)
                      ++.         ++..++..+ ...|++++|+..|++++...       |+ ...+...+.++...|++++|...|++++
T Consensus       317 ~~~---------a~~~La~~l-~~~G~~~eA~~~l~~al~~~-------P~~~~~~~~~a~al~~~G~~deA~~~l~~al  379 (656)
T PRK15174        317 LPY---------VRAMYARAL-RQVGQYTAASDEFVQLAREK-------GVTSKWNRYAAAALLQAGKTSEAESVFEHYI  379 (656)
T ss_pred             CHH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            864         667788887 58999999999999999987       44 3445556888899999999999999999


Q ss_pred             hhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          319 EWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       319 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      +.+|++..            ..+++|...|.++++..+
T Consensus       380 ~~~P~~~~------------~~~~ea~~~~~~~~~~~~  405 (656)
T PRK15174        380 QARASHLP------------QSFEEGLLALDGQISAVN  405 (656)
T ss_pred             HhChhhch------------hhHHHHHHHHHHHHHhcC
Confidence            99998752            334566666666666554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=100.00  E-value=1.3e-29  Score=212.34  Aligned_cols=319  Identities=24%  Similarity=0.358  Sum_probs=208.3

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh---------------------------------
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMH---------------------------------   48 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---------------------------------   48 (365)
                      |+.|+.++.++.+.-|.+..+|+.-+.++..+|+.+...++..+++.                                 
T Consensus       422 YenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAI  501 (913)
T KOG0495|consen  422 YENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAI  501 (913)
T ss_pred             HHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHH
Confidence            56778888888888888888888888888888877777776666653                                 


Q ss_pred             -------------------------------------------hCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 036703           49 -------------------------------------------WMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP   84 (365)
Q Consensus        49 -------------------------------------------~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p   84 (365)
                                                                 .+|. ..+|...+.+....|..+.-..+|++++...|
T Consensus       502 i~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p  581 (913)
T KOG0495|consen  502 IRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP  581 (913)
T ss_pred             HHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence                                                       2333 34455555555555555555555555555555


Q ss_pred             cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh
Q 036703           85 YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA  164 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  164 (365)
                      ..+.+|+.++......|+...|+.++..+.+. .|++    ..+|+.-..++.   ...++++|+.+|.++....|.   
T Consensus       582 kae~lwlM~ake~w~agdv~~ar~il~~af~~-~pns----eeiwlaavKle~---en~e~eraR~llakar~~sgT---  650 (913)
T KOG0495|consen  582 KAEILWLMYAKEKWKAGDVPAARVILDQAFEA-NPNS----EEIWLAAVKLEF---ENDELERARDLLAKARSISGT---  650 (913)
T ss_pred             cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-CCCc----HHHHHHHHHHhh---ccccHHHHHHHHHHHhccCCc---
Confidence            55555555555555555555555555555555 5554    556665555555   556666666666666555444   


Q ss_pred             HHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhh
Q 036703          165 EDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKR  244 (365)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  244 (365)
                      ..+|+.++.++...++.+        +|+.+++.+++.+|+...+|+.+|+++.+.++.+.|+..|...++.+|..    
T Consensus       651 eRv~mKs~~~er~ld~~e--------eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~----  718 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVE--------EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS----  718 (913)
T ss_pred             chhhHHHhHHHHHhhhHH--------HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC----
Confidence            345666666655555433        57777777777777777777777777777777777777777777777776    


Q ss_pred             HHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc
Q 036703          245 YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE  323 (365)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  323 (365)
                           +.+|+.++.+.| ..|..-+|+.+++++...+       |+ +.+|...+.++.+.|+.+.|.....+|++..|+
T Consensus       719 -----ipLWllLakleE-k~~~~~rAR~ildrarlkN-------Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~  785 (913)
T KOG0495|consen  719 -----IPLWLLLAKLEE-KDGQLVRARSILDRARLKN-------PKNALLWLESIRMELRAGNKEQAELLMAKALQECPS  785 (913)
T ss_pred             -----chHHHHHHHHHH-HhcchhhHHHHHHHHHhcC-------CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence                 347777777765 6667777777777777666       43 556677777777777777777777777777776


Q ss_pred             hHHHHHHHHHHHh------------------------------hccchhHHHHHHHHHhcCcC
Q 036703          324 NCYAWSKYTELEK------------------------------SLDETERARAIFELAIAQPI  356 (365)
Q Consensus       324 ~~~~~~~~~~~~~------------------------------~~g~~~~A~~~~~~a~~~~~  356 (365)
                      +..+|..-+.++-                              ...++++|++.|.++++.+|
T Consensus       786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~  848 (913)
T KOG0495|consen  786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP  848 (913)
T ss_pred             cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            6555554443332                              22346777777777777777

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.3e-29  Score=229.82  Aligned_cols=312  Identities=11%  Similarity=0.063  Sum_probs=264.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKM  100 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  100 (365)
                      ..+...|..+...|++++|+..|++++...|++..|..++.++...|++++|+..+.++++.+|++..+|..+|.++...
T Consensus       128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       128 AKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            44678899999999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhhhcCChhhH--------------------------HHHHHHHHHHHH-----------------
Q 036703          101 GEVDRARNVYECAVEIFLADDHDEA--------------------------EQLFVAFAKFEE-----------------  137 (365)
Q Consensus       101 ~~~~~A~~~~~~a~~~~~~~~~~~~--------------------------~~~~~~~~~~~~-----------------  137 (365)
                      |++++|+..|..+... .+.+....                          ...+..++.++.                 
T Consensus       208 g~~~eA~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (615)
T TIGR00990       208 GKYADALLDLTASCII-DGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL  286 (615)
T ss_pred             CCHHHHHHHHHHHHHh-CCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence            9999999887665543 22210000                          000111111110                 


Q ss_pred             ----------------hccccchhHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHH
Q 036703          138 ----------------MGCNCKETDRARCIYKFALDRIPK-GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGV  200 (365)
Q Consensus       138 ----------------~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l  200 (365)
                                      .....+.+++|...|++++...+. ......+...+.++...|+.+        .|+..|++++
T Consensus       287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~--------eA~~~~~kal  358 (615)
T TIGR00990       287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL--------EALADLSKSI  358 (615)
T ss_pred             ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH--------HHHHHHHHHH
Confidence                            000235789999999999976421 123567888888888889866        6999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703          201 RKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF  280 (365)
Q Consensus       201 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  280 (365)
                      ..+|++...|..++.++...|++++|+..|+++++.+|.++.         ++...|.++ ...|++++|+..|++++..
T Consensus       359 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~lg~~~-~~~g~~~~A~~~~~kal~l  428 (615)
T TIGR00990       359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---------IYYHRAQLH-FIKGEFAQAGKDYQKSIDL  428 (615)
T ss_pred             HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHH-HHcCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999854         788888887 6899999999999999999


Q ss_pred             cccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703          281 YFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       281 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                      .       |+ ...+..+|.++.+.|++++|+..|++++...|+++.++..++.++...|++++|+..|++++...|.+
T Consensus       429 ~-------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~  500 (615)
T TIGR00990       429 D-------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET  500 (615)
T ss_pred             C-------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence            8       54 66788999999999999999999999999999999999999999999999999999999999998853

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=5.8e-29  Score=239.33  Aligned_cols=322  Identities=11%  Similarity=0.146  Sum_probs=266.4

Q ss_pred             ChhhHHHHHHHHHHhCCCchHH--H------------HHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQL--W------------NNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLR   65 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~--~------------~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~   65 (365)
                      ++++|+..|+++++.+|++...  |            ...+..+...|++++|+..|+++++.+|+ ..++..++.++..
T Consensus       318 ~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~  397 (1157)
T PRK11447        318 DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA  397 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4788999999999999986431  2            34477788999999999999999999998 7788899999999


Q ss_pred             hccHHHHHHHHHHHHHhCCcchHHHHHHHHH------------------------------------------HHhhcch
Q 036703           66 YNEVQRARHIFERLVQCHPYNLSAWINFADF------------------------------------------EMKMGEV  103 (365)
Q Consensus        66 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~------------------------------------------~~~~~~~  103 (365)
                      .|++++|+..|+++++.+|++..++..++.+                                          +...|++
T Consensus       398 ~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~  477 (1157)
T PRK11447        398 RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKW  477 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCH
Confidence            9999999999999999999887776655444                                          3456899


Q ss_pred             HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchh
Q 036703          104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG  183 (365)
Q Consensus       104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  183 (365)
                      ++|+..|+++++. .|++    +.++..++.++.   ..|++++|+..|+++++..|.+  ...+..++.+....++.+.
T Consensus       478 ~eA~~~~~~Al~~-~P~~----~~~~~~LA~~~~---~~G~~~~A~~~l~~al~~~P~~--~~~~~a~al~l~~~~~~~~  547 (1157)
T PRK11447        478 AQAAELQRQRLAL-DPGS----VWLTYRLAQDLR---QAGQRSQADALMRRLAQQKPND--PEQVYAYGLYLSGSDRDRA  547 (1157)
T ss_pred             HHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhCCCHHH
Confidence            9999999999999 9988    889999999999   9999999999999999988876  4455555555444444332


Q ss_pred             hhHHH------------------------------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHH
Q 036703          184 IEDAI------------------------------------AGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR  227 (365)
Q Consensus       184 ~~~~~------------------------------------~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~  227 (365)
                      ....+                                    .++|+.    .++..|.++.++..++.++...|++++|+
T Consensus       548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~----~l~~~p~~~~~~~~La~~~~~~g~~~~A~  623 (1157)
T PRK11447        548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA----LLRQQPPSTRIDLTLADWAQQRGDYAAAR  623 (1157)
T ss_pred             HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH----HHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            11100                                    012222    34468999999999999999999999999


Q ss_pred             HHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCC
Q 036703          228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGN  306 (365)
Q Consensus       228 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  306 (365)
                      ..|+++++..|.+..         .+..++.++ ...|++++|+..+++++...       |+ +..+..++.++...|+
T Consensus       624 ~~y~~al~~~P~~~~---------a~~~la~~~-~~~g~~~eA~~~l~~ll~~~-------p~~~~~~~~la~~~~~~g~  686 (1157)
T PRK11447        624 AAYQRVLTREPGNAD---------ARLGLIEVD-IAQGDLAAARAQLAKLPATA-------NDSLNTQRRVALAWAALGD  686 (1157)
T ss_pred             HHHHHHHHhCCCCHH---------HHHHHHHHH-HHCCCHHHHHHHHHHHhccC-------CCChHHHHHHHHHHHhCCC
Confidence            999999999999854         788888887 58999999999999999887       44 6677888999999999


Q ss_pred             CccHHHHHHHHHhhCcchH------HHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703          307 IDPCRKLYEKYLEWSPENC------YAWSKYTELEKSLDETERARAIFELAIA  353 (365)
Q Consensus       307 ~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~g~~~~A~~~~~~a~~  353 (365)
                      +++|..+|++++...|+++      .++..++.++...|+.++|...|++++.
T Consensus       687 ~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        687 TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999876543      4677789999999999999999999985

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.97  E-value=1.1e-27  Score=221.00  Aligned_cols=337  Identities=11%  Similarity=-0.010  Sum_probs=265.3

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|..+|+++++.+|.++.++..++.++...|++++|+..++++++..|+ .. |..++.++...|++++|+..++++
T Consensus        64 ~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~a  142 (765)
T PRK10049         64 QWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQA  142 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999998 56 888999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHH----------------------------------------------HH
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYE----------------------------------------------CA  113 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~----------------------------------------------~a  113 (365)
                      ++..|+++.++..++.++...|..+.|+..++                                              .+
T Consensus       143 l~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l  222 (765)
T PRK10049        143 LPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL  222 (765)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence            99999999998888888876666555554444                                              33


Q ss_pred             HhhhhcCC---hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch-hHHHHHHHHHHHHHcCCchhhhHHHH
Q 036703          114 VEIFLADD---HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR-AEDLYRKFLAFEKQYGDREGIEDAIA  189 (365)
Q Consensus       114 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (365)
                      ++. .|.+   .+............+.   ..|++++|+..|+++++..|..+ ....+  ++..+...|+++       
T Consensus       223 l~~-~~~~p~~~~~~~~a~~d~l~~Ll---~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e-------  289 (765)
T PRK10049        223 EAL-WHDNPDATADYQRARIDRLGALL---ARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPE-------  289 (765)
T ss_pred             Hhh-cccCCccchHHHHHHHHHHHHHH---HhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcH-------
Confidence            332 2222   0111112222122234   67899999999999998754321 23344  466777888866       


Q ss_pred             HHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhH------HHHhHHHHHHHHHH
Q 036703          190 GKMRLQYEDGVRKNPMN----YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRY------WQRYIYLWINYALY  259 (365)
Q Consensus       190 ~~a~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~------~~~~~~~~~~~~~~  259 (365)
                       +|+..|+++++.+|.+    ......++..+...|++++|...++++....|.......      -..+..+....+..
T Consensus       290 -~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~  368 (765)
T PRK10049        290 -KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV  368 (765)
T ss_pred             -HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence             7999999999988876    356677777788999999999999999998874321000      00113355667777


Q ss_pred             HhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhc
Q 036703          260 KEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSL  338 (365)
Q Consensus       260 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  338 (365)
                      + ...|++++|+..+++++...       |+ +.++..++.++...|++++|++.+++++..+|++..++...+...+..
T Consensus       369 l-~~~g~~~eA~~~l~~al~~~-------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~  440 (765)
T PRK10049        369 A-KYSNDLPQAEMRARELAYNA-------PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDL  440 (765)
T ss_pred             H-HHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence            6 58899999999999999998       55 788999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHhcCcCCCCCc
Q 036703          339 DETERARAIFELAIAQPILDLPE  361 (365)
Q Consensus       339 g~~~~A~~~~~~a~~~~~~~~p~  361 (365)
                      |++++|..+++++++..| +.|.
T Consensus       441 ~~~~~A~~~~~~ll~~~P-d~~~  462 (765)
T PRK10049        441 QEWRQMDVLTDDVVAREP-QDPG  462 (765)
T ss_pred             CCHHHHHHHHHHHHHhCC-CCHH
Confidence            999999999999999999 5443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.97  E-value=4.6e-27  Score=203.10  Aligned_cols=310  Identities=14%  Similarity=0.026  Sum_probs=257.9

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----hHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN----LSAWINFA   94 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~   94 (365)
                      ....+..|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|..++++++...+..    ...+..+|
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La  114 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG  114 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            344555678888999999999999999999998 7899999999999999999999999998854322    35688999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh---HHHHHHH
Q 036703           95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA---EDLYRKF  171 (365)
Q Consensus        95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~~~~  171 (365)
                      .++...|++++|+.+|+++++. .|.+    ..++..++.++.   ..|++++|++.++++++..|.+..   ..++..+
T Consensus       115 ~~~~~~g~~~~A~~~~~~~l~~-~~~~----~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (389)
T PRK11788        115 QDYLKAGLLDRAEELFLQLVDE-GDFA----EGALQQLLEIYQ---QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL  186 (389)
T ss_pred             HHHHHCCCHHHHHHHHHHHHcC-Ccch----HHHHHHHHHHHH---HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            9999999999999999999998 7776    889999999999   999999999999999987776432   2345566


Q ss_pred             HHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHH
Q 036703          172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIY  251 (365)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~  251 (365)
                      +..+...|+.+        .|...|+++++.+|++..++..++.++...|++++|...|++++...|.+.        ..
T Consensus       187 a~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--------~~  250 (389)
T PRK11788        187 AQQALARGDLD--------AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL--------SE  250 (389)
T ss_pred             HHHHHhCCCHH--------HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH--------HH
Confidence            77777778755        699999999999999999999999999999999999999999999887753        22


Q ss_pred             HHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHH
Q 036703          252 LWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKY  331 (365)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  331 (365)
                      .+..++..+ ...|++++|...++++++..       |+...+..++.++.+.|++++|...++++++..|++..+...+
T Consensus       251 ~~~~l~~~~-~~~g~~~~A~~~l~~~~~~~-------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~  322 (389)
T PRK11788        251 VLPKLMECY-QALGDEAEGLEFLRRALEEY-------PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL  322 (389)
T ss_pred             HHHHHHHHH-HHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            556667776 58899999999999999987       5545568899999999999999999999999999887655444


Q ss_pred             HHHHhh--ccchhHHHHHHHHHhcCcCCCCCc
Q 036703          332 TELEKS--LDETERARAIFELAIAQPILDLPE  361 (365)
Q Consensus       332 ~~~~~~--~g~~~~A~~~~~~a~~~~~~~~p~  361 (365)
                      ......  .|+..++..++++.++......|+
T Consensus       323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            443322  568888888888777654433443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.97  E-value=1e-26  Score=214.72  Aligned_cols=335  Identities=8%  Similarity=-0.068  Sum_probs=268.6

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      +.++|+.++.++....|....++..+|.++...|++++|...|+++++.+|. ..++..++.++...|++++|+..++++
T Consensus        30 ~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~  109 (765)
T PRK10049         30 QDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQL  109 (765)
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4678999999999989998999999999999999999999999999999998 788999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  159 (365)
                      ++..|+++. +..++.++...|++++|+..++++++. .|++    ..++..++.++.   ..+..++|+..++++.. .
T Consensus       110 l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~-~P~~----~~~~~~la~~l~---~~~~~e~Al~~l~~~~~-~  179 (765)
T PRK10049        110 VSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR-APQT----QQYPTEYVQALR---NNRLSAPALGAIDDANL-T  179 (765)
T ss_pred             HHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HCCChHHHHHHHHhCCC-C
Confidence            999999999 999999999999999999999999999 9998    888888898887   77777777766665544 2


Q ss_pred             CCc-----------------------------------------------hh-----HHHHHH-HHHHHHHcCCchhhhH
Q 036703          160 PKG-----------------------------------------------RA-----EDLYRK-FLAFEKQYGDREGIED  186 (365)
Q Consensus       160 p~~-----------------------------------------------~~-----~~~~~~-~~~~~~~~~~~~~~~~  186 (365)
                      |..                                               ..     ...... ++.+ ...|+      
T Consensus       180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~------  252 (765)
T PRK10049        180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDR------  252 (765)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhh------
Confidence            211                                               00     000000 0001 11122      


Q ss_pred             HHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccC
Q 036703          187 AIAGKMRLQYEDGVRKNPMNY-DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAG  265 (365)
Q Consensus       187 ~~~~~a~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (365)
                        ...|+..|+++++..|..+ .+...++.++...|++++|+..|+++++..|.+....     ......++..+ ...|
T Consensus       253 --~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~-----~~~~~~L~~a~-~~~g  324 (765)
T PRK10049        253 --YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS-----DEELADLFYSL-LESE  324 (765)
T ss_pred             --HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC-----hHHHHHHHHHH-Hhcc
Confidence              3579999999998764322 2333358899999999999999999998877652100     11333444444 4889


Q ss_pred             ChhHHHHHHHHHHhccccCCCcc------hh---HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703          266 DLERTRDVYRTLFIFYFSFSPRM------EE---RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK  336 (365)
Q Consensus       266 ~~~~a~~~~~~a~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  336 (365)
                      ++++|+..++++....|....++      |+   ......++.++...|++++|++.+++++...|+++.++..++.++.
T Consensus       325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~  404 (765)
T PRK10049        325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ  404 (765)
T ss_pred             cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999998875322111      33   3467788999999999999999999999999999999999999999


Q ss_pred             hccchhHHHHHHHHHhcCcCCCCCc
Q 036703          337 SLDETERARAIFELAIAQPILDLPE  361 (365)
Q Consensus       337 ~~g~~~~A~~~~~~a~~~~~~~~p~  361 (365)
                      ..|++++|.+.+++++...| +.++
T Consensus       405 ~~g~~~~A~~~l~~al~l~P-d~~~  428 (765)
T PRK10049        405 ARGWPRAAENELKKAEVLEP-RNIN  428 (765)
T ss_pred             hcCCHHHHHHHHHHHHhhCC-CChH
Confidence            99999999999999999999 4443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.4e-27  Score=193.87  Aligned_cols=326  Identities=15%  Similarity=0.184  Sum_probs=261.7

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHH---
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIF---   76 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~---   76 (365)
                      +|++|+++|..++..+|+.+..|...+.+|...|++++.++...++++++|+ ..+++..+..+...|++++|..-.   
T Consensus       130 kY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~  209 (606)
T KOG0547|consen  130 KYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVL  209 (606)
T ss_pred             cHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHH
Confidence            5899999999999999999999999999999999999999999999999999 788888888888777766654321   


Q ss_pred             ---------------HHHHH--------------hC---Cc---------------------------------------
Q 036703           77 ---------------ERLVQ--------------CH---PY---------------------------------------   85 (365)
Q Consensus        77 ---------------~~~l~--------------~~---p~---------------------------------------   85 (365)
                                     ++.+.              ..   |.                                       
T Consensus       210 ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~  289 (606)
T KOG0547|consen  210 CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEK  289 (606)
T ss_pred             HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHh
Confidence                           11111              00   00                                       


Q ss_pred             --------------------------c---------hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH
Q 036703           86 --------------------------N---------LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV  130 (365)
Q Consensus        86 --------------------------~---------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  130 (365)
                                                +         ..++...|.++.-.|+.-.|...|+.+++. .|..    ..+++
T Consensus       290 ~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l-~~~~----~~lyI  364 (606)
T KOG0547|consen  290 GLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL-DPAF----NSLYI  364 (606)
T ss_pred             hCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc-Cccc----chHHH
Confidence                                      1         223444455556667777778888888888 7766    77788


Q ss_pred             HHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHH
Q 036703          131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTW  210 (365)
Q Consensus       131 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~  210 (365)
                      .++.+|.   ..++.++-...|.++.+.+|.+  +++|..-+++..-.++.+        .|+.-|++++.++|.+.-.+
T Consensus       365 ~~a~~y~---d~~~~~~~~~~F~~A~~ldp~n--~dvYyHRgQm~flL~q~e--------~A~aDF~Kai~L~pe~~~~~  431 (606)
T KOG0547|consen  365 KRAAAYA---DENQSEKMWKDFNKAEDLDPEN--PDVYYHRGQMRFLLQQYE--------EAIADFQKAISLDPENAYAY  431 (606)
T ss_pred             HHHHHHh---hhhccHHHHHHHHHHHhcCCCC--CchhHhHHHHHHHHHHHH--------HHHHHHHHHhhcChhhhHHH
Confidence            8888888   8888888888999998888887  456666666665555533        69999999999999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc--
Q 036703          211 FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM--  288 (365)
Q Consensus       211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~--  288 (365)
                      ..++....+++.++++...|+.+++..|..++         ++..++..+ ..++++++|.+.|.+++.+.|....+.  
T Consensus       432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E---------vy~~fAeiL-tDqqqFd~A~k~YD~ai~LE~~~~~~~v~  501 (606)
T KOG0547|consen  432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPE---------VYNLFAEIL-TDQQQFDKAVKQYDKAIELEPREHLIIVN  501 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch---------HHHHHHHHH-hhHHhHHHHHHHHHHHHhhcccccccccc
Confidence            99999888899999999999999999999865         777888887 599999999999999999976522221  


Q ss_pred             hhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          289 EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      +.+-+...+..+-++ +++..|..++++|++++|.+-.++..++.++.+.|+.++|+++|+++..+.
T Consensus       502 ~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  502 AAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             chhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            223344444444444 899999999999999999999999999999999999999999999987654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.96  E-value=2.2e-25  Score=192.63  Aligned_cols=287  Identities=16%  Similarity=0.141  Sum_probs=244.1

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHI   75 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~   75 (365)
                      ++++|...|+++++.+|++..++..++.++...|++++|+..+++++...+.     ...+..++..+...|++++|..+
T Consensus        50 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~  129 (389)
T PRK11788         50 QPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEEL  129 (389)
T ss_pred             ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4688999999999999999999999999999999999999999999985432     24678889999999999999999


Q ss_pred             HHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh-hHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 036703           76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD-EAEQLFVAFAKFEEMGCNCKETDRARCIYKF  154 (365)
Q Consensus        76 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  154 (365)
                      |+++++.+|.+..++..++.++...|++++|++.++++++. .|.+.. .....+..++.++.   ..|++++|...|++
T Consensus       130 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~  205 (389)
T PRK11788        130 FLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLRVEIAHFYCELAQQAL---ARGDLDAARALLKK  205 (389)
T ss_pred             HHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHH---hCCCHHHHHHHHHH
Confidence            99999999989999999999999999999999999999998 765411 12345678888999   99999999999999


Q ss_pred             HhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703          155 ALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN-YDTWFDYIRLEERVGNQERVREVYERA  233 (365)
Q Consensus       155 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~  233 (365)
                      +++..|..  ...+..++..+...|+.+        +|...+++++..+|.+ ..++..++.++...|++++|...++++
T Consensus       206 al~~~p~~--~~~~~~la~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  275 (389)
T PRK11788        206 ALAADPQC--VRASILLGDLALAQGDYA--------AAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA  275 (389)
T ss_pred             HHhHCcCC--HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99988875  567778888888889865        7999999999988877 467888999999999999999999999


Q ss_pred             HhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH---hCCCccH
Q 036703          234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC---LGNIDPC  310 (365)
Q Consensus       234 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A  310 (365)
                      ++..|+..          ....++..+ ...|++++|+..++++++..       |+...+..+......   .|+..++
T Consensus       276 ~~~~p~~~----------~~~~la~~~-~~~g~~~~A~~~l~~~l~~~-------P~~~~~~~l~~~~~~~~~~g~~~~a  337 (389)
T PRK11788        276 LEEYPGAD----------LLLALAQLL-EEQEGPEAAQALLREQLRRH-------PSLRGFHRLLDYHLAEAEEGRAKES  337 (389)
T ss_pred             HHhCCCch----------HHHHHHHHH-HHhCCHHHHHHHHHHHHHhC-------cCHHHHHHHHHHhhhccCCccchhH
Confidence            99988753          335677776 58899999999999999997       654444444444443   5688888


Q ss_pred             HHHHHHHHh
Q 036703          311 RKLYEKYLE  319 (365)
Q Consensus       311 ~~~~~~al~  319 (365)
                      ...+++.++
T Consensus       338 ~~~~~~~~~  346 (389)
T PRK11788        338 LLLLRDLVG  346 (389)
T ss_pred             HHHHHHHHH
Confidence            888887775

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.6e-25  Score=193.66  Aligned_cols=330  Identities=15%  Similarity=0.182  Sum_probs=220.2

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++.|-..|..+++.+|+|..+.++-|.+....|++..|+.+|++++..+|.  +...+..+.+.++.|+.+.|+..|.++
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra  225 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA  225 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence            355666666666666666666666666666666666666666666666665  344445555555666666666666666


Q ss_pred             HHhCCcchHHHHHHHHHHHhhc---chHHHHHHHHHHHhhhhcCC---------------------------------hh
Q 036703           80 VQCHPYNLSAWINFADFEMKMG---EVDRARNVYECAVEIFLADD---------------------------------HD  123 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~---------------------------------~~  123 (365)
                      ++++|+++.+...++.+-....   .+..+...+.++-.. .|.+                                 .+
T Consensus       226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~  304 (1018)
T KOG2002|consen  226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS  304 (1018)
T ss_pred             HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence            6666655555555555444332   233444444444444 4444                                 01


Q ss_pred             hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC
Q 036703          124 EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN  203 (365)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~  203 (365)
                      .....++.+|+.+-   .+|++++|..+|.++++..|++ .......+++++...|+..        .+..+|+++++..
T Consensus       305 ~~aes~Y~~gRs~H---a~Gd~ekA~~yY~~s~k~~~d~-~~l~~~GlgQm~i~~~dle--------~s~~~fEkv~k~~  372 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYH---AQGDFEKAFKYYMESLKADNDN-FVLPLVGLGQMYIKRGDLE--------ESKFCFEKVLKQL  372 (1018)
T ss_pred             HHHHHHHHHHHHHH---hhccHHHHHHHHHHHHccCCCC-ccccccchhHHHHHhchHH--------HHHHHHHHHHHhC
Confidence            22334555666666   7778888888888777777765 3445556667776777644        5777888888888


Q ss_pred             CCCHHHHHHHHHHHHHhC----CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHh
Q 036703          204 PMNYDTWFDYIRLEERVG----NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFI  279 (365)
Q Consensus       204 p~~~~~~~~~~~~~~~~~----~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~  279 (365)
                      |++.+....+|.+|...+    ..++|..+..++++..|.+.         ..|+.++.++  ..++...++.+|.+|+.
T Consensus       373 p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~---------~a~l~laql~--e~~d~~~sL~~~~~A~d  441 (1018)
T KOG2002|consen  373 PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS---------EAWLELAQLL--EQTDPWASLDAYGNALD  441 (1018)
T ss_pred             cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHH--HhcChHHHHHHHHHHHH
Confidence            888888878887776654    55677777777777777763         4888888886  56777777888888886


Q ss_pred             ccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh-----Ccc-----hHHHHHHHHHHHhhccchhHHHHHHH
Q 036703          280 FYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW-----SPE-----NCYAWSKYTELEKSLDETERARAIFE  349 (365)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-----~~~~~~~~~~~~~~~g~~~~A~~~~~  349 (365)
                      ........ +.+++.++.|.+.+..|++.+|...|.+|+..     +++     +...-++++.++...++++.|..+|.
T Consensus       442 ~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk  520 (1018)
T KOG2002|consen  442 ILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK  520 (1018)
T ss_pred             HHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            53222221 34778888888888889999999999888876     222     23357788888888888888888888


Q ss_pred             HHhcCcC
Q 036703          350 LAIAQPI  356 (365)
Q Consensus       350 ~a~~~~~  356 (365)
                      .+++..|
T Consensus       521 ~Ilkehp  527 (1018)
T KOG2002|consen  521 SILKEHP  527 (1018)
T ss_pred             HHHHHCc
Confidence            8888777

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=2e-24  Score=200.06  Aligned_cols=316  Identities=10%  Similarity=-0.015  Sum_probs=254.7

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhcc---HHH---
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNE---VQR---   71 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~---~~~---   71 (365)
                      +.+|....+...+..|.+.......+-...+.|+.++|...|+++....++    ..+...++.++.+++.   ..+   
T Consensus       358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  437 (987)
T PRK09782        358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI  437 (987)
T ss_pred             hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence            345666777777777999999999999999999999999999999886544    2234467777765543   222   


Q ss_pred             ----------------------HHHHHHHHHHhCCc--chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHH
Q 036703           72 ----------------------ARHIFERLVQCHPY--NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQ  127 (365)
Q Consensus        72 ----------------------A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  127 (365)
                                            +...+.+++...|.  ++.+|..+|.++.. ++.++|+..|.+++.. .|++    . 
T Consensus       438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~-~Pd~----~-  510 (987)
T PRK09782        438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR-QPDA----W-  510 (987)
T ss_pred             hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-CCch----H-
Confidence                                  33334455556677  88899999999987 7888999999999998 8764    3 


Q ss_pred             HHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH
Q 036703          128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY  207 (365)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~  207 (365)
                      ....++..+.   ..|++++|+..|++++...|..   ..+...+......|+..        .|...|+++++.+|.+.
T Consensus       511 ~~L~lA~al~---~~Gr~eeAi~~~rka~~~~p~~---~a~~~la~all~~Gd~~--------eA~~~l~qAL~l~P~~~  576 (987)
T PRK09782        511 QHRAVAYQAY---QVEDYATALAAWQKISLHDMSN---EDLLAAANTAQAAGNGA--------ARDRWLQQAEQRGLGDN  576 (987)
T ss_pred             HHHHHHHHHH---HCCCHHHHHHHHHHHhccCCCc---HHHHHHHHHHHHCCCHH--------HHHHHHHHHHhcCCccH
Confidence            3666677777   8899999999999987765553   34566677777888755        68899999999988887


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCc
Q 036703          208 DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR  287 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~  287 (365)
                      ..+..++......|++++|...|+++++..|+ ..         .+..++.++ ...|++++|+..|++++...      
T Consensus       577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~---------a~~~LA~~l-~~lG~~deA~~~l~~AL~l~------  639 (987)
T PRK09782        577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN---------AYVARATIY-RQRHNVPAAVSDLRAALELE------  639 (987)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHHhC------
Confidence            77776666666779999999999999999996 32         677788877 58999999999999999998      


Q ss_pred             chh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          288 MEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       288 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                       |+ +..+..+|.++...|++++|+..|+++++.+|+++.++.+++.++...|++++|...|+++++..|
T Consensus       640 -Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        640 -PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence             54 778889999999999999999999999999999999999999999999999999999999999988

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.95  E-value=5.3e-24  Score=178.62  Aligned_cols=321  Identities=22%  Similarity=0.412  Sum_probs=261.8

Q ss_pred             hhHHHHHHHHHHh-CCCc-----hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHH
Q 036703            3 DHGRNAWDRVVTL-SPRV-----DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQR   71 (365)
Q Consensus         3 ~~A~~~~~~~l~~-~p~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~   71 (365)
                      .+-+..|.+|++. +|.-     ..+|..+|.+|...|+++.|+.+|+++++..-.     ..+|..+|....++.+++.
T Consensus       364 ~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~  443 (835)
T KOG2047|consen  364 AEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEA  443 (835)
T ss_pred             HHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHH
Confidence            4556778888764 6653     578999999999999999999999999986533     5789999999999999999


Q ss_pred             HHHHHHHHHHhCC------------------cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703           72 ARHIFERLVQCHP------------------YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA  133 (365)
Q Consensus        72 A~~~~~~~l~~~p------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  133 (365)
                      |..+.+++.....                  .+..+|..++++....|-++....+|++++..     ...+|.+..++|
T Consensus       444 Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-----riaTPqii~NyA  518 (835)
T KOG2047|consen  444 ALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-----RIATPQIIINYA  518 (835)
T ss_pred             HHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----hcCCHHHHHHHH
Confidence            9999999876321                  15678999999999999999999999999998     334499999999


Q ss_pred             HHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHH-HHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC--HHHH
Q 036703          134 KFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN--YDTW  210 (365)
Q Consensus       134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~--~~~~  210 (365)
                      .++.   ....++++.++|++++...+.....++|..|.. +-.+.|...      .+.|+.+|+++|..+|..  ..++
T Consensus       519 mfLE---eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k------lEraRdLFEqaL~~Cpp~~aKtiy  589 (835)
T KOG2047|consen  519 MFLE---EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK------LERARDLFEQALDGCPPEHAKTIY  589 (835)
T ss_pred             HHHH---hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Confidence            9999   999999999999999999888777889999854 555666554      568999999999999843  2478


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh
Q 036703          211 FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE  290 (365)
Q Consensus       211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~  290 (365)
                      +.++.+....|-...|..+|+++....+......+|+-       ++.-- ...-.+...+.+|++|++..|+.    .-
T Consensus       590 LlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni-------~I~ka-ae~yGv~~TR~iYekaIe~Lp~~----~~  657 (835)
T KOG2047|consen  590 LLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNI-------YIKKA-AEIYGVPRTREIYEKAIESLPDS----KA  657 (835)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHHH-HHHhCCcccHHHHHHHHHhCChH----HH
Confidence            88999999999999999999999888777655443332       22211 12335678899999999997331    11


Q ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHhh-Ccc-hHHHHHHHHHHHhhccchhHHHHHHH
Q 036703          291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEW-SPE-NCYAWSKYTELEKSLDETERARAIFE  349 (365)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~  349 (365)
                      .++-..+++++.+.|.++.|+.+|.-+.+. +|. ++++|..+-.++.++|+.+.-+++++
T Consensus       658 r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR  718 (835)
T KOG2047|consen  658 REMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR  718 (835)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            567788999999999999999999999887 453 78899999999999999777776653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.95  E-value=1.8e-24  Score=188.04  Aligned_cols=337  Identities=15%  Similarity=0.132  Sum_probs=256.3

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|..++..+++++|.++.+|..+|.++.+.|+.+++...+-.|-.++|+ ...|..+++...++|++.+|+-+|.++
T Consensus       154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA  233 (895)
T KOG2076|consen  154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA  233 (895)
T ss_pred             CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999 799999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC-hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD-HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      ++.+|.+.......+.++.+.|+..+|...|.+++.. .|.. ...........++.+.   ..++-+.|.+.++.++..
T Consensus       234 I~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~-~p~~d~er~~d~i~~~~~~~~---~~~~~e~a~~~le~~~s~  309 (895)
T KOG2076|consen  234 IQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL-DPPVDIERIEDLIRRVAHYFI---THNERERAAKALEGALSK  309 (895)
T ss_pred             HhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999 8743 1112334455677777   778889999999999984


Q ss_pred             CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHH----------HHHH------HHHHcCCC----CHHH-HHHHHHHH
Q 036703          159 IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMR----------LQYE------DGVRKNPM----NYDT-WFDYIRLE  217 (365)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----------~~~~------~~l~~~p~----~~~~-~~~~~~~~  217 (365)
                      ..+....+-...++.+......++.....+.....          ...+      .++-.-|+    +..+ ...++.+.
T Consensus       310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~  389 (895)
T KOG2076|consen  310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH  389 (895)
T ss_pred             ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence            43322223334444444443333221111110000          0000      00000111    1223 44444455


Q ss_pred             HHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHH
Q 036703          218 ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKY  297 (365)
Q Consensus       218 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~  297 (365)
                      ...++..++...+..--...|.+.        +.+++..+..+ ...|.++.|+.+|.......+.     ....+|..+
T Consensus       390 L~~~e~~e~ll~~l~~~n~~~~d~--------~dL~~d~a~al-~~~~~~~~Al~~l~~i~~~~~~-----~~~~vw~~~  455 (895)
T KOG2076|consen  390 LKERELLEALLHFLVEDNVWVSDD--------VDLYLDLADAL-TNIGKYKEALRLLSPITNREGY-----QNAFVWYKL  455 (895)
T ss_pred             ccccchHHHHHHHHHHhcCChhhh--------HHHHHHHHHHH-HhcccHHHHHHHHHHHhcCccc-----cchhhhHHH
Confidence            555666666555543322224432        55888899998 6999999999999999987522     226689999


Q ss_pred             HHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          298 IEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       298 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      |.+++..|.++.|..+|++++...|++.++...++.++...|+.++|.+.++....-+
T Consensus       456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D  513 (895)
T KOG2076|consen  456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD  513 (895)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence            9999999999999999999999999999999999999999999999999998876333

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.4e-25  Score=187.73  Aligned_cols=303  Identities=13%  Similarity=0.105  Sum_probs=241.5

Q ss_pred             HHHHHHHHHHHhc--CChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703           21 QLWNNYIRMEENL--GNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE   97 (365)
Q Consensus        21 ~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~   97 (365)
                      .++..+|..+...  -+..+|+..|++.-...++ .-....+|..|...+++++|+.+|+.+-+..|--..-.-.+...+
T Consensus       318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~L  397 (638)
T KOG1126|consen  318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTL  397 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHH
Confidence            4455566555543  4567899999995566666 444456889999999999999999999999996665555555566


Q ss_pred             HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 036703           98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ  177 (365)
Q Consensus        98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  177 (365)
                      ....+.-+---+-+..++. .|..    |+.|..+|+++.   -+++.+.|++.|+++++.+|..  +..+..++.=...
T Consensus       398 WHLq~~v~Ls~Laq~Li~~-~~~s----PesWca~GNcfS---LQkdh~~Aik~f~RAiQldp~f--aYayTLlGhE~~~  467 (638)
T KOG1126|consen  398 WHLQDEVALSYLAQDLIDT-DPNS----PESWCALGNCFS---LQKDHDTAIKCFKRAIQLDPRF--AYAYTLLGHESIA  467 (638)
T ss_pred             HHHHhhHHHHHHHHHHHhh-CCCC----cHHHHHhcchhh---hhhHHHHHHHHHHHhhccCCcc--chhhhhcCChhhh
Confidence            6655544444455667777 7777    999999999999   9999999999999999999874  2222222221112


Q ss_pred             cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH
Q 036703          178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA  257 (365)
Q Consensus       178 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  257 (365)
                      ..+        .++|...|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|+.++|.+.         .+...++
T Consensus       468 ~ee--------~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---------vi~~~~g  530 (638)
T KOG1126|consen  468 TEE--------FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---------VILCHIG  530 (638)
T ss_pred             hHH--------HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---------hHHhhhh
Confidence            222        34799999999999999999999999999999999999999999999999984         3666777


Q ss_pred             HHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh
Q 036703          258 LYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS  337 (365)
Q Consensus       258 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  337 (365)
                      ..+ .+.|+.++|+.+|++|+..+|..      +---...+.++...+++++|...+++.-+.-|+...++..++.++.+
T Consensus       531 ~~~-~~~k~~d~AL~~~~~A~~ld~kn------~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~  603 (638)
T KOG1126|consen  531 RIQ-HQLKRKDKALQLYEKAIHLDPKN------PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR  603 (638)
T ss_pred             HHH-HHhhhhhHHHHHHHHHHhcCCCC------chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            777 48999999999999999998543      33445667888889999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHhcCcCC
Q 036703          338 LDETERARAIFELAIAQPIL  357 (365)
Q Consensus       338 ~g~~~~A~~~~~~a~~~~~~  357 (365)
                      .|+.+.|..-|-=|..++|.
T Consensus       604 ~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  604 LGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HccchHHHHhhHHHhcCCCc
Confidence            99999999999999999985

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=1.5e-24  Score=200.79  Aligned_cols=298  Identities=12%  Similarity=-0.003  Sum_probs=251.1

Q ss_pred             HHHHHHHHHHhCCC--chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 036703            5 GRNAWDRVVTLSPR--VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQC   82 (365)
Q Consensus         5 A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~   82 (365)
                      +...+.+++...|.  ++.+|..+|.++.. |++.+|+..+.+++...|+......++..+...|++++|+..|++++..
T Consensus       460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~  538 (987)
T PRK09782        460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH  538 (987)
T ss_pred             hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            45566666777777  88999999999987 7888999999999999998545666677778899999999999998877


Q ss_pred             CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703           83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus        83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      .|. ...+..+|.++.+.|++++|..+|+++++. .|..    ......++....   ..|++++|+..|+++++..|+ 
T Consensus       539 ~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~P~~----~~l~~~La~~l~---~~Gr~~eAl~~~~~AL~l~P~-  608 (987)
T PRK09782        539 DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR-GLGD----NALYWWLHAQRY---IPGQPELALNDLTRSLNIAPS-  608 (987)
T ss_pred             CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcc----HHHHHHHHHHHH---hCCCHHHHHHHHHHHHHhCCC-
Confidence            664 556788899999999999999999999998 7776    666666666666   679999999999999999985 


Q ss_pred             hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703          163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                        ...+..++.++.+.|+.+        .|+..|++++..+|+++.++..+|.++...|++++|+..|+++++..|.++.
T Consensus       609 --~~a~~~LA~~l~~lG~~d--------eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~  678 (987)
T PRK09782        609 --ANAYVARATIYRQRHNVP--------AAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPA  678 (987)
T ss_pred             --HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence              568888888888999866        6999999999999999999999999999999999999999999999998854


Q ss_pred             hhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc
Q 036703          243 KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP  322 (365)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  322 (365)
                               ++..++..+ ...|++++|+..|++++...|+.      ..+...++.+.....++..|.+.++++...+|
T Consensus       679 ---------a~~nLA~al-~~lGd~~eA~~~l~~Al~l~P~~------a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        679 ---------LIRQLAYVN-QRLDDMAATQHYARLVIDDIDNQ------ALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             ---------HHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCC------chhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence                     788888887 58999999999999999998433      45667888888888999999999999999998


Q ss_pred             chHHHHHHHHHHHhhccc
Q 036703          323 ENCYAWSKYTELEKSLDE  340 (365)
Q Consensus       323 ~~~~~~~~~~~~~~~~g~  340 (365)
                      +.. +-...+.++...++
T Consensus       743 ~~~-a~~~~g~~~~~~~~  759 (987)
T PRK09782        743 DSS-IGLRSGAMSTANNN  759 (987)
T ss_pred             cch-hccccchHhhhccc
Confidence            777 66666666665544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=8.9e-25  Score=184.34  Aligned_cols=290  Identities=14%  Similarity=0.137  Sum_probs=252.9

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      ..+|...|++.-...++..-+...+|+.|+..+++++|.++|+.+-+..|- ...---|...++...+.-+--.+-+..+
T Consensus       335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li  414 (638)
T KOG1126|consen  335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI  414 (638)
T ss_pred             HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence            467899999966778887777788999999999999999999999999998 3333344455555555444444556688


Q ss_pred             HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      ..+|++|+.|..+|.++.-+++.+.|+++|++|++. .|..    .-++..+|.=+.   .+.++|.|...|+.|+..+|
T Consensus       415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-dp~f----aYayTLlGhE~~---~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-DPRF----AYAYTLLGHESI---ATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-CCcc----chhhhhcCChhh---hhHHHHhHHHHHHhhhcCCc
Confidence            899999999999999999999999999999999999 8876    888898888888   89999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      .+  ...|+.++..+.+.+..+        .|.-.|++|+..+|.+..+...+|.++.+.|+.++|+.+|++|+..+|.+
T Consensus       487 rh--YnAwYGlG~vy~Kqek~e--------~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn  556 (638)
T KOG1126|consen  487 RH--YNAWYGLGTVYLKQEKLE--------FAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN  556 (638)
T ss_pred             hh--hHHHHhhhhheeccchhh--------HHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC
Confidence            86  789999999999988755        69999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHh
Q 036703          241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLE  319 (365)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~  319 (365)
                      +-         .....+..+ ...+++++|+..++.....-       |+ ..++..+|.++.+.|+.+.|+..|.-|..
T Consensus       557 ~l---------~~~~~~~il-~~~~~~~eal~~LEeLk~~v-------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  557 PL---------CKYHRASIL-FSLGRYVEALQELEELKELV-------PQESSVFALLGKIYKRLGNTDLALLHFSWALD  619 (638)
T ss_pred             ch---------hHHHHHHHH-HhhcchHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence            64         444566665 58999999999999999887       55 67889999999999999999999999999


Q ss_pred             hCcchHH
Q 036703          320 WSPENCY  326 (365)
Q Consensus       320 ~~p~~~~  326 (365)
                      ++|.-.+
T Consensus       620 ldpkg~~  626 (638)
T KOG1126|consen  620 LDPKGAQ  626 (638)
T ss_pred             CCCccch
Confidence            9996544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.94  E-value=7.1e-23  Score=186.20  Aligned_cols=338  Identities=10%  Similarity=-0.010  Sum_probs=252.1

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFE   77 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~   77 (365)
                      +++.|+..|+++++.+|+++.....++.++...|+.++|+..+++++  +|.   ......++..+...|++++|+.+|+
T Consensus        49 d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~  126 (822)
T PRK14574         49 DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQ  126 (822)
T ss_pred             CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            57889999999999999986444488888989999999999999999  454   4455556889999999999999999


Q ss_pred             HHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703           78 RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus        78 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      ++++.+|+++.++..++..+...++.++|++.+++++.. .|..    ... ..++.++.   ..++..+|+..|+++++
T Consensus       127 kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~----~~~-l~layL~~---~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        127 SSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER-DPTV----QNY-MTLSYLNR---ATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-Ccch----HHH-HHHHHHHH---hcchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 8874    333 55566666   67777779999999999


Q ss_pred             cCCCchhHHHHHHHHHHHHHcCCchhhhH----------------------------------------HHH--------
Q 036703          158 RIPKGRAEDLYRKFLAFEKQYGDREGIED----------------------------------------AIA--------  189 (365)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~--------  189 (365)
                      ..|.+  ..++..+.......|......+                                        ...        
T Consensus       198 ~~P~n--~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~  275 (822)
T PRK14574        198 LAPTS--EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ  275 (822)
T ss_pred             hCCCC--HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence            99986  3344444333333221110000                                        001        


Q ss_pred             --------------------------------------------------------------------HHHHHHHHHHHH
Q 036703          190 --------------------------------------------------------------------GKMRLQYEDGVR  201 (365)
Q Consensus       190 --------------------------------------------------------------------~~a~~~~~~~l~  201 (365)
                                                                                          ++|..+|++++.
T Consensus       276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~  355 (822)
T PRK14574        276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY  355 (822)
T ss_pred             HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence                                                                                445555555554


Q ss_pred             cCC------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch------hhhHHHHhHHHHHHHHHHHhhccCChhH
Q 036703          202 KNP------MNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE------EKRYWQRYIYLWINYALYKEVDAGDLER  269 (365)
Q Consensus       202 ~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (365)
                      ..|      .+......+.-.+...+++++|..++++..+..|...      .......+.......+..+ ...|+..+
T Consensus       356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~-~~~gdl~~  434 (822)
T PRK14574        356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL-VALNDLPT  434 (822)
T ss_pred             ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH-HHcCCHHH
Confidence            331      1112223344445556666666666666655444100      0000011233444456655 57899999


Q ss_pred             HHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHH
Q 036703          270 TRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIF  348 (365)
Q Consensus       270 a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~  348 (365)
                      |.+.+++.+...       |. +.+...++.++...|.+.+|+..++.+...+|++..+....+...+..|++.+|..+.
T Consensus       435 Ae~~le~l~~~a-------P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~  507 (822)
T PRK14574        435 AQKKLEDLSSTA-------PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT  507 (822)
T ss_pred             HHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            999999999998       54 7888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcCCCCC
Q 036703          349 ELAIAQPILDLP  360 (365)
Q Consensus       349 ~~a~~~~~~~~p  360 (365)
                      +.+++..| +.|
T Consensus       508 ~~l~~~~P-e~~  518 (822)
T PRK14574        508 DDVISRSP-EDI  518 (822)
T ss_pred             HHHHhhCC-Cch
Confidence            99999999 444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8.9e-24  Score=172.01  Aligned_cols=307  Identities=14%  Similarity=0.116  Sum_probs=242.2

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK   99 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~   99 (365)
                      ..+...|.-+.+.|++++|+++|..|++++|+ +..+...+-+|...|++++..+...++++++|+...++++.+..+..
T Consensus       116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~  195 (606)
T KOG0547|consen  116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ  195 (606)
T ss_pred             HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence            34566788889999999999999999999999 77888899999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHH------------------HHHHHhhh----------------hcCC---------------------hh-
Q 036703          100 MGEVDRARNV------------------YECAVEIF----------------LADD---------------------HD-  123 (365)
Q Consensus       100 ~~~~~~A~~~------------------~~~a~~~~----------------~~~~---------------------~~-  123 (365)
                      .|++++|+.-                  .++.++..                .|..                     .+ 
T Consensus       196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k  275 (606)
T KOG0547|consen  196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK  275 (606)
T ss_pred             hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence            9998887522                  22222210                0110                     00 


Q ss_pred             ------------------------------------------------hHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703          124 ------------------------------------------------EAEQLFVAFAKFEEMGCNCKETDRARCIYKFA  155 (365)
Q Consensus       124 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  155 (365)
                                                                      .....+...|.++.   -.|+.-.|..-|+.+
T Consensus       276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f---L~g~~~~a~~d~~~~  352 (606)
T KOG0547|consen  276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF---LKGDSLGAQEDFDAA  352 (606)
T ss_pred             chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh---hcCCchhhhhhHHHH
Confidence                                                            00112223334444   678888999999999


Q ss_pred             hccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 036703          156 LDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIA  235 (365)
Q Consensus       156 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  235 (365)
                      |+..|...  .+|...+..+.+..+..        +....|.++..++|.++++++..|++..-.+++++|..-|++++.
T Consensus       353 I~l~~~~~--~lyI~~a~~y~d~~~~~--------~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~  422 (606)
T KOG0547|consen  353 IKLDPAFN--SLYIKRAAAYADENQSE--------KMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS  422 (606)
T ss_pred             HhcCcccc--hHHHHHHHHHhhhhccH--------HHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99988864  34555555665555544        678899999999999999999999999999999999999999999


Q ss_pred             cCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHH
Q 036703          236 NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLY  314 (365)
Q Consensus       236 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~  314 (365)
                      .+|.+.         ..++..+... .+.+.++++...|+.+.+..       |. ++++..+++++...++|++|.+.|
T Consensus       423 L~pe~~---------~~~iQl~~a~-Yr~~k~~~~m~~Fee~kkkF-------P~~~Evy~~fAeiLtDqqqFd~A~k~Y  485 (606)
T KOG0547|consen  423 LDPENA---------YAYIQLCCAL-YRQHKIAESMKTFEEAKKKF-------PNCPEVYNLFAEILTDQQQFDKAVKQY  485 (606)
T ss_pred             cChhhh---------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC-------CCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence            999984         2344444433 37789999999999999998       66 788899999999999999999999


Q ss_pred             HHHHhhCcc------hHHHHHHHHHHHh-hccchhHHHHHHHHHhcCcCC
Q 036703          315 EKYLEWSPE------NCYAWSKYTELEK-SLDETERARAIFELAIAQPIL  357 (365)
Q Consensus       315 ~~al~~~p~------~~~~~~~~~~~~~-~~g~~~~A~~~~~~a~~~~~~  357 (365)
                      ++++++.|.      ++..++.-+.+.. -.+++..|..++++|++.+|.
T Consensus       486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk  535 (606)
T KOG0547|consen  486 DKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK  535 (606)
T ss_pred             HHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch
Confidence            999999998      5554444443333 248999999999999999984

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.1e-23  Score=167.11  Aligned_cols=315  Identities=17%  Similarity=0.206  Sum_probs=235.5

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHH---HHHHHHHHHhccHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGW---LSYIKFKLRYNEVQRARHIFER   78 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~~~~~A~~~~~~   78 (365)
                      .+.|+..|..++...|-+-.+|..++.+....       ......+..-|....|   ..+..++......+++..-++.
T Consensus       180 ~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~  252 (559)
T KOG1155|consen  180 LSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKER  252 (559)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788899999988999999999888764421       1122222222321222   1233444444456666666666


Q ss_pred             HHHh-CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhH-------------------------------H
Q 036703           79 LVQC-HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA-------------------------------E  126 (365)
Q Consensus        79 ~l~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------------------------------~  126 (365)
                      .... .|.+..+-...|.+.....++++|+..|+..++. .|-+ -+.                               +
T Consensus       253 l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DPYR-l~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~  330 (559)
T KOG1155|consen  253 LSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DPYR-LDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRP  330 (559)
T ss_pred             HHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CCCc-chhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCc
Confidence            6665 6666666666666666677777777777777766 6543 111                               2


Q ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC
Q 036703          127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN  206 (365)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~  206 (365)
                      +.....|++|.   -.++.++|..+|+++++.+|..  ..+|...+.=+....+..        .|+..|+++++.+|.+
T Consensus       331 ETCCiIaNYYS---lr~eHEKAv~YFkRALkLNp~~--~~aWTLmGHEyvEmKNt~--------AAi~sYRrAvdi~p~D  397 (559)
T KOG1155|consen  331 ETCCIIANYYS---LRSEHEKAVMYFKRALKLNPKY--LSAWTLMGHEYVEMKNTH--------AAIESYRRAVDINPRD  397 (559)
T ss_pred             cceeeehhHHH---HHHhHHHHHHHHHHHHhcCcch--hHHHHHhhHHHHHhcccH--------HHHHHHHHHHhcCchh
Confidence            23334455666   7788999999999999999986  678888877666666544        6999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC
Q 036703          207 YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP  286 (365)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~  286 (365)
                      ..+|+.+|+.|.-.+-..=|.-.|+++++.-|.+..         +|..+|.+|+ +.++.++|++.|++++....    
T Consensus       398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR---------lw~aLG~CY~-kl~~~~eAiKCykrai~~~d----  463 (559)
T KOG1155|consen  398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR---------LWVALGECYE-KLNRLEEAIKCYKRAILLGD----  463 (559)
T ss_pred             HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH---------HHHHHHHHHH-HhccHHHHHHHHHHHHhccc----
Confidence            999999999999999999999999999999999854         8999999995 99999999999999998842    


Q ss_pred             cchhHHHHHHHHHHHHHhCCCccHHHHHHHHHh-------hCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703          287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLE-------WSPENCYAWSKYTELEKSLDETERARAIFELAIAQ  354 (365)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  354 (365)
                        .+...+..+|.++.+.++.++|..+|++.++       ..|+...+...++..+.+.+++++|.....+++.-
T Consensus       464 --te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  464 --TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             --cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence              1256788999999999999999999999988       45767788888999999999988888776666654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.94  E-value=3.7e-26  Score=187.52  Aligned_cols=261  Identities=16%  Similarity=0.225  Sum_probs=96.0

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 036703           58 SYIKFKLRYNEVQRARHIFERLVQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF  135 (365)
Q Consensus        58 ~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  135 (365)
                      .++.++...|++++|.+++.+.+..  .|+++..|..++.+....++++.|+..|++++.. .+.+    +..+..++.+
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~~~~----~~~~~~l~~l   87 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-DKAN----PQDYERLIQL   87 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc----cccccccccc
Confidence            4455555555555555555443332  2455555555555555555555555555555555 4433    4444444444


Q ss_pred             HHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHH
Q 036703          136 EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK--NPMNYDTWFDY  213 (365)
Q Consensus       136 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~~~~~~  213 (365)
                       .   ..+++++|..+++++.+..++   ...+..++.++...++.+        ++...++++...  .|.++..|..+
T Consensus        88 -~---~~~~~~~A~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~  152 (280)
T PF13429_consen   88 -L---QDGDPEEALKLAEKAYERDGD---PRYLLSALQLYYRLGDYD--------EAEELLEKLEELPAAPDSARFWLAL  152 (280)
T ss_dssp             -------------------------------------H-HHHTT-HH--------HHHHHHHHHHH-T---T-HHHHHHH
T ss_pred             -c---ccccccccccccccccccccc---cchhhHHHHHHHHHhHHH--------HHHHHHHHHHhccCCCCCHHHHHHH
Confidence             4   455555555555555543332   234444444444555433        344444443332  25667778888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHH
Q 036703          214 IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRI  293 (365)
Q Consensus       214 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~  293 (365)
                      |.++...|+.++|+..|+++++..|++..         ++..++.++ ...|+.++++.+++...+..|+.      +.+
T Consensus       153 a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------~~~~l~~~l-i~~~~~~~~~~~l~~~~~~~~~~------~~~  216 (280)
T PF13429_consen  153 AEIYEQLGDPDKALRDYRKALELDPDDPD---------ARNALAWLL-IDMGDYDEAREALKRLLKAAPDD------PDL  216 (280)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------HHHHHHHHH-CTTCHHHHHHHHHHHHHHH-HTS------CCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHH-HHCCChHHHHHHHHHHHHHCcCH------HHH
Confidence            88888888888888888888888888754         555566665 57788888777777777765332      445


Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703          294 FKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQ  354 (365)
Q Consensus       294 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  354 (365)
                      |..+|.++...|++++|..+|++++..+|+++.+...++.++...|+.++|..++++++..
T Consensus       217 ~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  217 WDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             CHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             HHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6788888888899999999999999999999999999999999999999999998888753

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.1e-22  Score=162.10  Aligned_cols=307  Identities=15%  Similarity=0.149  Sum_probs=243.6

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--cchHHHHHH
Q 036703           17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP--YNLSAWINF   93 (365)
Q Consensus        17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~   93 (365)
                      ..++-..+.+|.++...|....|+..|..++...|- =.+|..+..+..   +.+    .....+..-|  .+...-.-+
T Consensus       161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~e----~~~~l~~~l~~~~h~M~~~F~  233 (559)
T KOG1155|consen  161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DIE----ILSILVVGLPSDMHWMKKFFL  233 (559)
T ss_pred             cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hHH----HHHHHHhcCcccchHHHHHHH
Confidence            344666778899999999999999999999988887 467777776653   222    2223333334  223333445


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch-hHHHHHHHH
Q 036703           94 ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR-AEDLYRKFL  172 (365)
Q Consensus        94 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~  172 (365)
                      +..+....+.++++.-+++....++|.+    ..+-...|.+..   .+.++++|+.+|+...+.+|-.- ..+.+....
T Consensus       234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~----~~i~~~~A~~~y---~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L  306 (559)
T KOG1155|consen  234 KKAYQELHQHEEALQKKERLSSVGFPNS----MYIKTQIAAASY---NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL  306 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCcc----HHHHHHHHHHHh---hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence            6677777789999999999888867776    777777888888   89999999999999999988631 122222211


Q ss_pred             HHHHH-------------c-----------CCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 036703          173 AFEKQ-------------Y-----------GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVRE  228 (365)
Q Consensus       173 ~~~~~-------------~-----------~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~  228 (365)
                      .....             .           |++-.+. ...++|+..|+++++++|+...+|..+|.-+...++...|+.
T Consensus       307 Yv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr-~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~  385 (559)
T KOG1155|consen  307 YVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR-SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIE  385 (559)
T ss_pred             HHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHH-HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence            11100             0           1111110 113689999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCc
Q 036703          229 VYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNID  308 (365)
Q Consensus       229 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (365)
                      .|++|++.+|.+.         ..|..+|+.|+ -++.+.-|+-.|++|....|.      ++.+|..+|++|.+.++.+
T Consensus       386 sYRrAvdi~p~Dy---------RAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPn------DsRlw~aLG~CY~kl~~~~  449 (559)
T KOG1155|consen  386 SYRRAVDINPRDY---------RAWYGLGQAYE-IMKMHFYALYYFQKALELKPN------DSRLWVALGECYEKLNRLE  449 (559)
T ss_pred             HHHHHHhcCchhH---------HHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHhccHH
Confidence            9999999999984         49999999996 899999999999999999842      3778899999999999999


Q ss_pred             cHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703          309 PCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQ  354 (365)
Q Consensus       309 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  354 (365)
                      +|+++|.+++.....+..++..+|.++...++..+|...|++.++.
T Consensus       450 eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~  495 (559)
T KOG1155|consen  450 EAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV  495 (559)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            9999999999998888999999999999999999999999999873

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.93  E-value=9.6e-23  Score=178.66  Aligned_cols=323  Identities=13%  Similarity=0.098  Sum_probs=221.5

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCh--hHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNV--AGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFER   78 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~--~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~   78 (365)
                      +..|..+|..+-.++-.....|..-+.++...|..  +.|.+.|...++.+|+ ....+.-|.+....|+|-.|..+|++
T Consensus       110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~  189 (1018)
T KOG2002|consen  110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKK  189 (1018)
T ss_pred             HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHH
Confidence            46788899999888777666777777777777765  8999999999999998 67888889999999999999999999


Q ss_pred             HHHhCCcc-hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcc-----------------
Q 036703           79 LVQCHPYN-LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGC-----------------  140 (365)
Q Consensus        79 ~l~~~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  140 (365)
                      ++.++|.. ++..+..|.++.+.|..+.|+..|+++++. .|.+    ..+...++.+-....                 
T Consensus       190 al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqL-dp~~----v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~  264 (1018)
T KOG2002|consen  190 ALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQL-DPTC----VSALVALGEVDLNFNDSDSYKKGVQLLQRAYK  264 (1018)
T ss_pred             HHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhc-Chhh----HHHHHHHHHHHHHccchHHHHHHHHHHHHHHh
Confidence            99999964 567788889999999999999999999999 8876    555555554433000                 


Q ss_pred             -----------------ccchhHHHHHHHHHHhccCCCc-hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703          141 -----------------NCKETDRARCIYKFALDRIPKG-RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK  202 (365)
Q Consensus       141 -----------------~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~  202 (365)
                                       ..|++..+..+...++...... ....-++.++..+...|+++        +|...|.++++.
T Consensus       265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e--------kA~~yY~~s~k~  336 (1018)
T KOG2002|consen  265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE--------KAFKYYMESLKA  336 (1018)
T ss_pred             hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH--------HHHHHHHHHHcc
Confidence                             4455555555555555432111 12233444555555556544        577777777777


Q ss_pred             CCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhcc----CChhHHHHHHHHH
Q 036703          203 NPMN-YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDA----GDLERTRDVYRTL  277 (365)
Q Consensus       203 ~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~a  277 (365)
                      +|++ .-.++.+|+++...|+.+.+..+|+++++..|++..         ....+|.+|. ..    ...+.|..+..++
T Consensus       337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e---------tm~iLG~Lya-~~~~~~~~~d~a~~~l~K~  406 (1018)
T KOG2002|consen  337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE---------TMKILGCLYA-HSAKKQEKRDKASNVLGKV  406 (1018)
T ss_pred             CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH---------HHHHHHhHHH-hhhhhhHHHHHHHHHHHHH
Confidence            7666 555667777777777777777777777777777643         3333444432 22    2446666667776


Q ss_pred             HhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh-----CcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703          278 FIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW-----SPENCYAWSKYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                      ++..|.      +.+.|..++.++.. ++.-.+...|.+|+..     .+--+.+.++.|.++...|++.+|...|.+++
T Consensus       407 ~~~~~~------d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~  479 (1018)
T KOG2002|consen  407 LEQTPV------DSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL  479 (1018)
T ss_pred             Hhcccc------cHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence            666521      25556666666543 3444446666666632     22235677777777777788888888888877


Q ss_pred             cC
Q 036703          353 AQ  354 (365)
Q Consensus       353 ~~  354 (365)
                      ..
T Consensus       480 ~~  481 (1018)
T KOG2002|consen  480 GK  481 (1018)
T ss_pred             hh
Confidence            66

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.93  E-value=4.1e-22  Score=186.11  Aligned_cols=318  Identities=15%  Similarity=0.139  Sum_probs=143.0

Q ss_pred             hhHHHHHHHHHHhCC-CchHHHHHHHHHHHhcCChhHHHHHHHHHHhh--CCChHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSP-RVDQLWNNYIRMEENLGNVAGARQIFERWMHW--MPDHEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      +.|+.+|+++.+... -+...|..+...+.+.|+++.|.++|+++.+.  .|+..+|..++..+.+.|++++|..+|.++
T Consensus       454 e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M  533 (1060)
T PLN03218        454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM  533 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            344444444443311 11344444444444444444444444444432  233444444444444444444444444444


Q ss_pred             HHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh--hhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703           80 VQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEI--FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA  155 (365)
Q Consensus        80 l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  155 (365)
                      ...  .| +..+|..+...+.+.|+.++|.++|+++...  +...+    ..+|..+...+.   +.|++++|.++|+++
T Consensus       534 ~~~Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD----~vTynaLI~ay~---k~G~ldeA~elf~~M  605 (1060)
T PLN03218        534 RSKNVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD----HITVGALMKACA---NAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHH---HCCCHHHHHHHHHHH
Confidence            332  23 3444444444444444444444444444331  01111    334444444444   444444444444444


Q ss_pred             hccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703          156 LDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK--NPMNYDTWFDYIRLEERVGNQERVREVYERA  233 (365)
Q Consensus       156 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  233 (365)
                      .+..... ....|..++..+.+.|+.+        +|..+|+++.+.  .| +...|..++..+...|++++|..+++++
T Consensus       606 ~e~gi~p-~~~tynsLI~ay~k~G~~d--------eAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM  675 (1060)
T PLN03218        606 HEYNIKG-TPEVYTIAVNSCSQKGDWD--------FALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDA  675 (1060)
T ss_pred             HHcCCCC-ChHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            4432111 1234444444444444432        344455444442  22 2344444445555555555555555554


Q ss_pred             HhcC-CCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHH
Q 036703          234 IANV-PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRK  312 (365)
Q Consensus       234 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  312 (365)
                      .+.. +.+         ...+..++..+ ...|++++|..+|+.+......     |+...|..++..+.+.|++++|.+
T Consensus       676 ~k~G~~pd---------~~tynsLI~ay-~k~G~~eeA~~lf~eM~~~g~~-----PdvvtyN~LI~gy~k~G~~eeAle  740 (1060)
T PLN03218        676 RKQGIKLG---------TVSYSSLMGAC-SNAKNWKKALELYEDIKSIKLR-----PTVSTMNALITALCEGNQLPKALE  740 (1060)
T ss_pred             HHcCCCCC---------HHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4431 111         11344444444 3555555555555555432111     444555555555555555555555


Q ss_pred             HHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703          313 LYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQ  354 (365)
Q Consensus       313 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  354 (365)
                      +|+++...  .| +...|..+...+.+.|+.++|..++.++++.
T Consensus       741 lf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~  783 (1060)
T PLN03218        741 VLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKED  783 (1060)
T ss_pred             HHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            55555433  23 3444444555555555555555555555544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.93  E-value=1.2e-25  Score=184.50  Aligned_cols=270  Identities=16%  Similarity=0.219  Sum_probs=116.8

Q ss_pred             HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhC--CC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH
Q 036703           14 TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWM--PD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW   90 (365)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   90 (365)
                      +..|.  ...+.+|.++...|++++|.+++.+.+...  |+ ...|..++.+....++++.|+..|++++..++.++..+
T Consensus         4 ~~~~~--~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~   81 (280)
T PF13429_consen    4 EFGPS--EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY   81 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34566  334577999999999999999997776544  55 78999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHH
Q 036703           91 INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK  170 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~  170 (365)
                      ..++.+ ...+++++|.++++++.+. .++     +..+..++.++.   ..++++++..+++++....+...+..+|..
T Consensus        82 ~~l~~l-~~~~~~~~A~~~~~~~~~~-~~~-----~~~l~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  151 (280)
T PF13429_consen   82 ERLIQL-LQDGDPEEALKLAEKAYER-DGD-----PRYLLSALQLYY---RLGDYDEAEELLEKLEELPAAPDSARFWLA  151 (280)
T ss_dssp             -------------------------------------------H-HH---HTT-HHHHHHHHHHHHH-T---T-HHHHHH
T ss_pred             cccccc-ccccccccccccccccccc-ccc-----cchhhHHHHHHH---HHhHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence            999998 7899999999999999887 543     677788888888   999999999999997764433334789999


Q ss_pred             HHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhH
Q 036703          171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYI  250 (365)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~  250 (365)
                      ++.++.+.|+.+        +|+..|+++++.+|++..++..++.++...|+.++++..+....+..|.++.        
T Consensus       152 ~a~~~~~~G~~~--------~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~--------  215 (280)
T PF13429_consen  152 LAEIYEQLGDPD--------KALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD--------  215 (280)
T ss_dssp             HHHHHHHCCHHH--------HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC--------
T ss_pred             HHHHHHHcCCHH--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH--------
Confidence            999999999865        7999999999999999999999999999999999999999998888777654        


Q ss_pred             HHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703          251 YLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW  320 (365)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  320 (365)
                       +|..++..+ ...|++++|+..|+++++..       |+ +.+...+++++...|+.++|..++.+++..
T Consensus       216 -~~~~la~~~-~~lg~~~~Al~~~~~~~~~~-------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  216 -LWDALAAAY-LQLGRYEEALEYLEKALKLN-------PDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             -HCHHHHHHH-HHHT-HHHHHHHHHHHHHHS-------TT-HHHHHHHHHHHT------------------
T ss_pred             -HHHHHHHHh-cccccccccccccccccccc-------ccccccccccccccccccccccccccccccccc
Confidence             777788887 68999999999999999988       54 888999999999999999999999998753

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.93  E-value=1.5e-21  Score=182.38  Aligned_cols=316  Identities=12%  Similarity=0.083  Sum_probs=268.0

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh--CCChHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW--MPDHEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++.|..+|+....  |+ ...|..+...+.+.|+++.|..+|+++.+.  .|+...|..++..+.+.|+.+.|..+|+++
T Consensus       422 ~~eAl~lf~~M~~--pd-~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM  498 (1060)
T PLN03218        422 VKEAFRFAKLIRN--PT-LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM  498 (1060)
T ss_pred             HHHHHHHHHHcCC--CC-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence            4677777776654  65 788999999999999999999999999875  456789999999999999999999999999


Q ss_pred             HHhCC-cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703           80 VQCHP-YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus        80 l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      ..... .+..+|..+...|.+.|++++|.++|+++.+.+...+    ..+|..++..+.   +.|++++|.++|+++...
T Consensus       499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD----~vTYnsLI~a~~---k~G~~deA~~lf~eM~~~  571 (1060)
T PLN03218        499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD----RVVFNALISACG---QSGAVDRAFDVLAEMKAE  571 (1060)
T ss_pred             HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh
Confidence            87542 2789999999999999999999999999987634444    789999999999   999999999999998752


Q ss_pred             ----CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703          159 ----IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN-PMNYDTWFDYIRLEERVGNQERVREVYERA  233 (365)
Q Consensus       159 ----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  233 (365)
                          .|+   ...|..++..+.+.|+.+        +|..+|+.+.+.+ +.+...|..++..+.+.|++++|..+|.++
T Consensus       572 ~~gi~PD---~vTynaLI~ay~k~G~ld--------eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM  640 (1060)
T PLN03218        572 THPIDPD---HITVGALMKACANAGQVD--------RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM  640 (1060)
T ss_pred             cCCCCCc---HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence                343   568888888888999855        7999999999865 557789999999999999999999999999


Q ss_pred             Hhc--CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHH
Q 036703          234 IAN--VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCR  311 (365)
Q Consensus       234 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  311 (365)
                      .+.  .|+.          ..+..+...+ ...|++++|.++++.+.+....     |+...|..++..|.+.|++++|.
T Consensus       641 ~~~Gv~PD~----------~TynsLI~a~-~k~G~~eeA~~l~~eM~k~G~~-----pd~~tynsLI~ay~k~G~~eeA~  704 (1060)
T PLN03218        641 KKKGVKPDE----------VFFSALVDVA-GHAGDLDKAFEILQDARKQGIK-----LGTVSYSSLMGACSNAKNWKKAL  704 (1060)
T ss_pred             HHcCCCCCH----------HHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence            886  4442          2555566665 4889999999999999886422     67889999999999999999999


Q ss_pred             HHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          312 KLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       312 ~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      ++|+++...  .| +...|..++..+.+.|+.++|.++|+++....
T Consensus       705 ~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G  749 (1060)
T PLN03218        705 ELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLG  749 (1060)
T ss_pred             HHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            999998764  45 67889999999999999999999999987653

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.93  E-value=3.3e-22  Score=168.02  Aligned_cols=170  Identities=16%  Similarity=0.348  Sum_probs=137.8

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFER   78 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~   78 (365)
                      |+..-..|++++....+-+.+|..|..+...+|++...+..|.+++..-|-   ..+|..+..+..+.|-++-+..+|++
T Consensus        84 ~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrR  163 (835)
T KOG2047|consen   84 YESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRR  163 (835)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHH
Confidence            345567889999876777889999999999999999999999999999887   58999999999999999999999999


Q ss_pred             HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhh-----------------------hcCC--------------
Q 036703           79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF-----------------------LADD--------------  121 (365)
Q Consensus        79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~~~--------------  121 (365)
                      -++..|..   -..+..++...++.++|.+.|...+...                       +|+.              
T Consensus       164 YLk~~P~~---~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi  240 (835)
T KOG2047|consen  164 YLKVAPEA---REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI  240 (835)
T ss_pred             HHhcCHHH---HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence            99999965   3455667778888888888777776531                       1110              


Q ss_pred             ---hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHH
Q 036703          122 ---HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK-GRAEDLYRKFLAFEKQ  177 (365)
Q Consensus       122 ---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~  177 (365)
                         .+.-..+|..+|++|.   +.|.+++|+.+|++++...-. .+...++..|+.++..
T Consensus       241 ~rftDq~g~Lw~SLAdYYI---r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~  297 (835)
T KOG2047|consen  241 RRFTDQLGFLWCSLADYYI---RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEES  297 (835)
T ss_pred             ccCcHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHH
Confidence               2234578999999999   999999999999999986443 3356788888777653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.93  E-value=2.8e-22  Score=184.71  Aligned_cols=298  Identities=12%  Similarity=0.080  Sum_probs=240.4

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCcchHHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQC--HPYNLSAWINFADFE   97 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~   97 (365)
                      ..++..+...|.+.|++++|.++|+++..  ++...|..++..+.+.|+.++|..+|+++...  .| +..++..+...+
T Consensus       259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~  335 (697)
T PLN03081        259 TFVSCALIDMYSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIF  335 (697)
T ss_pred             ceeHHHHHHHHHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence            44567778888889999999999887742  45678889999999999999999999888763  45 677888888888


Q ss_pred             HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 036703           98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ  177 (365)
Q Consensus        98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  177 (365)
                      .+.|.+++|.+++..+++.+.+.+    ..++..++..|.   +.|++++|.++|++..+  |+   ...|..++..+.+
T Consensus       336 ~~~g~~~~a~~i~~~m~~~g~~~d----~~~~~~Li~~y~---k~G~~~~A~~vf~~m~~--~d---~~t~n~lI~~y~~  403 (697)
T PLN03081        336 SRLALLEHAKQAHAGLIRTGFPLD----IVANTALVDLYS---KWGRMEDARNVFDRMPR--KN---LISWNALIAGYGN  403 (697)
T ss_pred             HhccchHHHHHHHHHHHHhCCCCC----eeehHHHHHHHH---HCCCHHHHHHHHHhCCC--CC---eeeHHHHHHHHHH
Confidence            899999999999999888844555    778888899999   99999999999988764  22   4578888888888


Q ss_pred             cCCchhhhHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHH
Q 036703          178 YGDREGIEDAIAGKMRLQYEDGVRKN-PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINY  256 (365)
Q Consensus       178 ~~~~~~~~~~~~~~a~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  256 (365)
                      .|..+        +|..+|+++.+.. .-+...+..++..+...|..++|..+|+.+.+..+-.+.       ...+..+
T Consensus       404 ~G~~~--------~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-------~~~y~~l  468 (697)
T PLN03081        404 HGRGT--------KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-------AMHYACM  468 (697)
T ss_pred             cCCHH--------HHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------ccchHhH
Confidence            88755        6889999887642 234567888888888999999999999998765333222       1244555


Q ss_pred             HHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703          257 ALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK  336 (365)
Q Consensus       257 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  336 (365)
                      ...+ .+.|+.++|.++++++-. .       |+..+|..++..+...|+++.|...++++++..|++...+..+++++.
T Consensus       469 i~~l-~r~G~~~eA~~~~~~~~~-~-------p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~  539 (697)
T PLN03081        469 IELL-GREGLLDEAYAMIRRAPF-K-------PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN  539 (697)
T ss_pred             HHHH-HhcCCHHHHHHHHHHCCC-C-------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence            5555 488999999998876532 2       778889999999999999999999999999999999999999999999


Q ss_pred             hccchhHHHHHHHHHhcCcC
Q 036703          337 SLDETERARAIFELAIAQPI  356 (365)
Q Consensus       337 ~~g~~~~A~~~~~~a~~~~~  356 (365)
                      +.|++++|.++++.+.+..-
T Consensus       540 ~~G~~~~A~~v~~~m~~~g~  559 (697)
T PLN03081        540 SSGRQAEAAKVVETLKRKGL  559 (697)
T ss_pred             hCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999887654

>TIGR00540 hemY_coli hemY protein

Probab=99.92  E-value=9.5e-22  Score=169.36  Aligned_cols=301  Identities=9%  Similarity=-0.033  Sum_probs=239.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch-HHHHHHHHHHHhhcc
Q 036703           25 NYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-SAWINFADFEMKMGE  102 (365)
Q Consensus        25 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~  102 (365)
                      .-|.+....|+++.|.+.+.++.+..|+ ...+...+......|+++.|...+.++.+..|++. .+....+.++...|+
T Consensus        89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~  168 (409)
T TIGR00540        89 EEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE  168 (409)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence            3455666789999999999999999998 45667778999999999999999999999999765 567778999999999


Q ss_pred             hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh-H-HHHHHHHHHHHHcCC
Q 036703          103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA-E-DLYRKFLAFEKQYGD  180 (365)
Q Consensus       103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~-~~~~~~~~~~~~~~~  180 (365)
                      ++.|...++++++. .|++    +.++..++.++.   ..|++++|.+.+.+..+....+.. . .+......-....+.
T Consensus       169 ~~~Al~~l~~l~~~-~P~~----~~~l~ll~~~~~---~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~  240 (409)
T TIGR00540       169 LHAARHGVDKLLEM-APRH----KEVLKLAEEAYI---RSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM  240 (409)
T ss_pred             HHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999 9998    899999999999   999999999999999986433211 1 111111100011111


Q ss_pred             chhhhHHHHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHH
Q 036703          181 REGIEDAIAGKMRLQYEDGVRKNP----MNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINY  256 (365)
Q Consensus       181 ~~~~~~~~~~~a~~~~~~~l~~~p----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  256 (365)
                              .+.+...+.++....|    +++.++..++..+...|+.++|.+.++++++..|++....     ...+..+
T Consensus       241 --------~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-----~~~l~~~  307 (409)
T TIGR00540       241 --------ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-----LPLCLPI  307 (409)
T ss_pred             --------HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-----hHHHHHh
Confidence                    1124456777777777    5899999999999999999999999999999999985311     0122222


Q ss_pred             HHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHH--HHHhhCcchHHHHHHHHHH
Q 036703          257 ALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYE--KYLEWSPENCYAWSKYTEL  334 (365)
Q Consensus       257 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~~  334 (365)
                      ..   ...++.+.+++.++++++..|++    |+..+...+|.++.+.|++++|++.|+  ++++..|++.. +..++.+
T Consensus       308 ~~---l~~~~~~~~~~~~e~~lk~~p~~----~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~l  379 (409)
T TIGR00540       308 PR---LKPEDNEKLEKLIEKQAKNVDDK----PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADA  379 (409)
T ss_pred             hh---cCCCChHHHHHHHHHHHHhCCCC----hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHH
Confidence            22   35688899999999999998543    222788899999999999999999999  57788997666 5599999


Q ss_pred             HhhccchhHHHHHHHHHhcC
Q 036703          335 EKSLDETERARAIFELAIAQ  354 (365)
Q Consensus       335 ~~~~g~~~~A~~~~~~a~~~  354 (365)
                      +...|+.++|.++|++++..
T Consensus       380 l~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       380 FDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999998654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=99.92  E-value=1.8e-21  Score=167.63  Aligned_cols=293  Identities=11%  Similarity=0.013  Sum_probs=237.6

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh--HHHHHHHHHHHHhccHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH--EGWLSYIKFKLRYNEVQRARHIFER   78 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~A~~~~~~   78 (365)
                      +++.|.+.+.++.+..|+....+...|......|+++.|...+.++.+..|+.  .+...++.+....|+++.|...+++
T Consensus        99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~  178 (409)
T TIGR00540        99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDK  178 (409)
T ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            57889999999999999988888888999999999999999999999999984  4566679999999999999999999


Q ss_pred             HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703           79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus        79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      +++..|+++.++..++.++...|++++|.+.+.+..+. ...+......+-.....-..   ..+..+++...+.++.+.
T Consensus       179 l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~~l---~~~~~~~~~~~L~~~~~~  254 (409)
T TIGR00540       179 LLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLFDDEEFADLEQKAEIGLL---DEAMADEGIDGLLNWWKN  254 (409)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHH---HHHHHhcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999987 54431111122222222223   344555566788888877


Q ss_pred             CCCc--hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHH
Q 036703          159 IPKG--RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTW--FDYIRLEERVGNQERVREVYERAI  234 (365)
Q Consensus       159 ~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~--~~~~~~~~~~~~~~~A~~~~~~~~  234 (365)
                      .|..  ....++..++..+...|+.+        .|...++++++..|++....  ..........++.+.+.+.+++++
T Consensus       255 ~p~~~~~~~~l~~~~a~~l~~~g~~~--------~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l  326 (409)
T TIGR00540       255 QPRHRRHNIALKIALAEHLIDCDDHD--------SAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA  326 (409)
T ss_pred             CCHHHhCCHHHHHHHHHHHHHCCChH--------HHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence            7742  23789999999999999866        79999999999999997532  111122234588899999999999


Q ss_pred             hcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHH--HHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHH
Q 036703          235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR--TLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRK  312 (365)
Q Consensus       235 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  312 (365)
                      +..|+++.       +.+...+|.++ ...|++++|++.|+  .+++..       |++..+..++.++.+.|+.++|.+
T Consensus       327 k~~p~~~~-------~~ll~sLg~l~-~~~~~~~~A~~~le~a~a~~~~-------p~~~~~~~La~ll~~~g~~~~A~~  391 (409)
T TIGR00540       327 KNVDDKPK-------CCINRALGQLL-MKHGEFIEAADAFKNVAACKEQ-------LDANDLAMAADAFDQAGDKAEAAA  391 (409)
T ss_pred             HhCCCChh-------HHHHHHHHHHH-HHcccHHHHHHHHHHhHHhhcC-------CCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999972       13667788887 69999999999999  576776       777777899999999999999999


Q ss_pred             HHHHHHhh
Q 036703          313 LYEKYLEW  320 (365)
Q Consensus       313 ~~~~al~~  320 (365)
                      +|++++..
T Consensus       392 ~~~~~l~~  399 (409)
T TIGR00540       392 MRQDSLGL  399 (409)
T ss_pred             HHHHHHHH
Confidence            99998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.3e-21  Score=160.78  Aligned_cols=328  Identities=12%  Similarity=0.062  Sum_probs=269.5

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC--------C----------hhHHHHHHHHH---------HhhCCC-
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG--------N----------VAGARQIFERW---------MHWMPD-   52 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g--------~----------~~~A~~~~~~a---------l~~~p~-   52 (365)
                      |+++|+..|..|+..++.+.++...+.......-        .          .+.-+..|+--         +..+|+ 
T Consensus       156 n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~  235 (611)
T KOG1173|consen  156 NREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDE  235 (611)
T ss_pred             cHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchh
Confidence            5788999999999999998888777765544322        1          01111122210         001221 


Q ss_pred             --------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhh
Q 036703           53 --------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDE  124 (365)
Q Consensus        53 --------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  124 (365)
                              .++....++.+...+++.+-.++.+..++.+|-+...+....-++...|+..+-..+-.+.++. .|+.   
T Consensus       236 sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~---  311 (611)
T KOG1173|consen  236 SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSK---  311 (611)
T ss_pred             hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCC---
Confidence                    3455667777888899999999999999999988877766666888899988888888889999 8888   


Q ss_pred             HHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC
Q 036703          125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP  204 (365)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p  204 (365)
                       +-.|+..|.+|.   ..|++++|+++|.++...+|.-  ...|..++......|.-+        +|+..|..|-+..|
T Consensus       312 -a~sW~aVg~YYl---~i~k~seARry~SKat~lD~~f--gpaWl~fghsfa~e~Ehd--------QAmaaY~tAarl~~  377 (611)
T KOG1173|consen  312 -ALSWFAVGCYYL---MIGKYSEARRYFSKATTLDPTF--GPAWLAFGHSFAGEGEHD--------QAMAAYFTAARLMP  377 (611)
T ss_pred             -CcchhhHHHHHH---HhcCcHHHHHHHHHHhhcCccc--cHHHHHHhHHhhhcchHH--------HHHHHHHHHHHhcc
Confidence             999999999999   9999999999999999998875  789999998887777644        79999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccC
Q 036703          205 MNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSF  284 (365)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~  284 (365)
                      ....-.+.+|.-+...++...|.+.|..|+.++|.++-         +....|.+. ...+.+.+|...|+.++..-++.
T Consensus       378 G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl---------v~~Elgvva-y~~~~y~~A~~~f~~~l~~ik~~  447 (611)
T KOG1173|consen  378 GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPL---------VLHELGVVA-YTYEEYPEALKYFQKALEVIKSV  447 (611)
T ss_pred             CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcch---------hhhhhhhee-ehHhhhHHHHHHHHHHHHHhhhc
Confidence            99888888888899999999999999999999999962         444455553 57889999999999999542221


Q ss_pred             C---CcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703          285 S---PRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       285 ~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                      .   ..|  ..++.++|..+.+++.+++|+..|++++.+.|.++.++...|-++...|+++.|++.|-+++.+.|.+
T Consensus       448 ~~e~~~w--~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  448 LNEKIFW--EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             cccccch--hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            1   113  55789999999999999999999999999999999999999999999999999999999999999965

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.92  E-value=3.5e-22  Score=184.15  Aligned_cols=315  Identities=15%  Similarity=0.109  Sum_probs=207.9

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC------------------------------
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP------------------------------   51 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------------------------------   51 (365)
                      ++.|+.+|++...  |+ ...|..+...+.+.|++++|..+|+++++..+                              
T Consensus       174 ~~~A~~lf~~m~~--~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~  250 (697)
T PLN03081        174 LIDARRLFDEMPE--RN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV  250 (697)
T ss_pred             HHHHHHHHhcCCC--CC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            3445555554432  32 44556666666666666666666665543221                              


Q ss_pred             -------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhh
Q 036703           52 -------DHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDE  124 (365)
Q Consensus        52 -------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  124 (365)
                             +..++..++..|.+.|++++|..+|+++.   +.+..+|..++..|.+.|+.++|.++|+++.+.+...+   
T Consensus       251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd---  324 (697)
T PLN03081        251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID---  324 (697)
T ss_pred             HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---
Confidence                   11223344555555566666666665442   23555666666666666666666666666655422223   


Q ss_pred             HHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC
Q 036703          125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP  204 (365)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p  204 (365)
                       ...+..+...+.   +.|.+++|..++..+++..... ...++..++..+.+.|+.+        .|..+|+++.+   
T Consensus       325 -~~t~~~ll~a~~---~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~--------~A~~vf~~m~~---  388 (697)
T PLN03081        325 -QFTFSIMIRIFS---RLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRME--------DARNVFDRMPR---  388 (697)
T ss_pred             -HHHHHHHHHHHH---hccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHH--------HHHHHHHhCCC---
Confidence             455666666666   6666666666666666543211 1345666666666667644        68888887653   


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc
Q 036703          205 MNYDTWFDYIRLEERVGNQERVREVYERAIAN--VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF  282 (365)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~  282 (365)
                      .+...|..++..+...|+.++|.++|+++.+.  .|+..          .+..+...+ ...|..++|..+|+.+.+...
T Consensus       389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~----------T~~~ll~a~-~~~g~~~~a~~~f~~m~~~~g  457 (697)
T PLN03081        389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV----------TFLAVLSAC-RYSGLSEQGWEIFQSMSENHR  457 (697)
T ss_pred             CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH----------HHHHHHHHH-hcCCcHHHHHHHHHHHHHhcC
Confidence            35678999999999999999999999988765  44432          344445554 488999999999999876432


Q ss_pred             cCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703          283 SFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                      -.    |+...|..+++++.+.|++++|.++++++ ...| +..+|..+...+...|+.+.|..+++++++..|.+
T Consensus       458 ~~----p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~  527 (697)
T PLN03081        458 IK----PRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK  527 (697)
T ss_pred             CC----CCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence            22    66778899999999999999999999875 3345 56789999999999999999999999999988843

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=8.7e-22  Score=163.30  Aligned_cols=289  Identities=13%  Similarity=0.090  Sum_probs=244.6

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703           18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF   96 (365)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~   96 (365)
                      +++++....++.+...+++.+..++++..++.+|- .......+.++...|+..+--.+=.+++..+|+.+..|+..|..
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y  321 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY  321 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence            45788888999999999999999999999999998 44444445577888887777777788999999999999999999


Q ss_pred             HHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 036703           97 EMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK  176 (365)
Q Consensus        97 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  176 (365)
                      |...|++.+|+++|.++... .|.-    ...|+.+|..+.   ..|+-++|...|.+|-+..|....+.++...-.  .
T Consensus       322 Yl~i~k~seARry~SKat~l-D~~f----gpaWl~fghsfa---~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey--~  391 (611)
T KOG1173|consen  322 YLMIGKYSEARRYFSKATTL-DPTF----GPAWLAFGHSFA---GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEY--M  391 (611)
T ss_pred             HHHhcCcHHHHHHHHHHhhc-Cccc----cHHHHHHhHHhh---hcchHHHHHHHHHHHHHhccCCcchHHHHHHHH--H
Confidence            99999999999999999999 7776    999999999999   999999999999999999988754555544422  2


Q ss_pred             HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHH
Q 036703          177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINY  256 (365)
Q Consensus       177 ~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  256 (365)
                      ..++        .+.|...|.+++.++|+++-+...+|.+....+.+.+|..+|+.++...+.......  .+..++.++
T Consensus       392 ~t~n--------~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--~w~p~~~NL  461 (611)
T KOG1173|consen  392 RTNN--------LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--FWEPTLNNL  461 (611)
T ss_pred             Hhcc--------HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--chhHHHHhH
Confidence            3444        337999999999999999999999999999999999999999999965444322111  234588999


Q ss_pred             HHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHH
Q 036703          257 ALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTEL  334 (365)
Q Consensus       257 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  334 (365)
                      |..+ ...+.+++|+..|++++...       |. ...+...|-++...|+++.|...|.+++-+.|++..+-..+...
T Consensus       462 GH~~-Rkl~~~~eAI~~~q~aL~l~-------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  462 GHAY-RKLNKYEEAIDYYQKALLLS-------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA  532 (611)
T ss_pred             HHHH-HHHhhHHHHHHHHHHHHHcC-------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            9998 69999999999999999998       44 77889999999999999999999999999999986655544433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.91  E-value=1.2e-20  Score=161.76  Aligned_cols=296  Identities=9%  Similarity=0.052  Sum_probs=231.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhhCCChHH-HHHHHHHHHHhccHHHHHHHHHHHHHhCCcch-HHHHHHHHHHHhhcch
Q 036703           26 YIRMEENLGNVAGARQIFERWMHWMPDHEG-WLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-SAWINFADFEMKMGEV  103 (365)
Q Consensus        26 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~  103 (365)
                      -|......|++++|.+...++-+..+.+.+ +...+......|+++.|...|.++.+.+|++. ......+.++...|++
T Consensus        90 ~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~  169 (398)
T PRK10747         90 QALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNEN  169 (398)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCH
Confidence            344555679999999888887766555444 34445666899999999999999999999764 3344558999999999


Q ss_pred             HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh--H----HHHHHHHHHHHH
Q 036703          104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA--E----DLYRKFLAFEKQ  177 (365)
Q Consensus       104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~----~~~~~~~~~~~~  177 (365)
                      +.|...++++.+. .|++    +.+...++.++.   ..|++++|.+++.+..+..+.+..  .    ..+..+......
T Consensus       170 ~~Al~~l~~~~~~-~P~~----~~al~ll~~~~~---~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~  241 (398)
T PRK10747        170 HAARHGVDKLLEV-APRH----PEVLRLAEQAYI---RTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA  241 (398)
T ss_pred             HHHHHHHHHHHhc-CCCC----HHHHHHHHHHHH---HHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999 9998    999999999999   999999999999998876554321  1    111111111111


Q ss_pred             cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH
Q 036703          178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA  257 (365)
Q Consensus       178 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  257 (365)
                      ..+.        +......+..-...|+++.+...++..+...|+.++|...++++++..| ++.         +...++
T Consensus       242 ~~~~--------~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~---------l~~l~~  303 (398)
T PRK10747        242 DQGS--------EGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER---------LVLLIP  303 (398)
T ss_pred             hcCH--------HHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH---------HHHHHh
Confidence            1111        1233334444345577999999999999999999999999999999544 432         444555


Q ss_pred             HHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703          258 LYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK  336 (365)
Q Consensus       258 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  336 (365)
                      .+   ..++.++++...++.++.+       |+ +.+...+|.++...|++++|++.|+++++..|++.. +..++.++.
T Consensus       304 ~l---~~~~~~~al~~~e~~lk~~-------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~  372 (398)
T PRK10747        304 RL---KTNNPEQLEKVLRQQIKQH-------GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALD  372 (398)
T ss_pred             hc---cCCChHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHH
Confidence            44   4589999999999999998       55 778899999999999999999999999999996544 668999999


Q ss_pred             hccchhHHHHHHHHHhcCcCCC
Q 036703          337 SLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       337 ~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                      ..|+.++|..+|++++.+...+
T Consensus       373 ~~g~~~~A~~~~~~~l~~~~~~  394 (398)
T PRK10747        373 RLHKPEEAAAMRRDGLMLTLQN  394 (398)
T ss_pred             HcCCHHHHHHHHHHHHhhhccc
Confidence            9999999999999999876433

>PLN03077 Protein ECB2; Provisional

Probab=99.91  E-value=4.6e-21  Score=180.86  Aligned_cols=324  Identities=10%  Similarity=0.031  Sum_probs=227.7

Q ss_pred             ChhhHHHHHHHHHHh--CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC--ChHHHHHHHHHHHHhccHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTL--SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--DHEGWLSYIKFKLRYNEVQRARHIF   76 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~A~~~~   76 (365)
                      ++++|..+|++..+.  .|+ ...+..+...+.+.|+++.|.++++.+.+...  +..++..+++.|.+.|++++|.++|
T Consensus       369 ~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf  447 (857)
T PLN03077        369 LPDKALETYALMEQDNVSPD-EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF  447 (857)
T ss_pred             CHHHHHHHHHHHHHhCCCCC-ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            357788888877654  365 45566666677777888888888877776543  3567777777777888888888877


Q ss_pred             HHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhH-------------------------------
Q 036703           77 ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA-------------------------------  125 (365)
Q Consensus        77 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------------------------------  125 (365)
                      +++.+  | +...|..+...+.+.|+.++|+.+|+++... .+.+....                               
T Consensus       448 ~~m~~--~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~  523 (857)
T PLN03077        448 HNIPE--K-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD  523 (857)
T ss_pred             HhCCC--C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence            76532  2 5567777777777777777777777777655 43330000                               


Q ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc--C
Q 036703          126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK--N  203 (365)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~--~  203 (365)
                      ..+...+...|.   +.|++++|..+|+..   .|+   ...|..++..+...|..+        +|..+|+++.+.  .
T Consensus       524 ~~~~naLi~~y~---k~G~~~~A~~~f~~~---~~d---~~s~n~lI~~~~~~G~~~--------~A~~lf~~M~~~g~~  586 (857)
T PLN03077        524 GFLPNALLDLYV---RCGRMNYAWNQFNSH---EKD---VVSWNILLTGYVAHGKGS--------MAVELFNRMVESGVN  586 (857)
T ss_pred             ceechHHHHHHH---HcCCHHHHHHHHHhc---CCC---hhhHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCC
Confidence            122234455666   777888888777765   222   457777777777777754        688888887763  3


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcccc
Q 036703          204 PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS  283 (365)
Q Consensus       204 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~  283 (365)
                      |+ ...+..+...+...|.+++|..+|+.+.+..+-.+.       +..+..+...+ .+.|+.++|.++++++- ..  
T Consensus       587 Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-------~~~y~~lv~~l-~r~G~~~eA~~~~~~m~-~~--  654 (857)
T PLN03077        587 PD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-------LKHYACVVDLL-GRAGKLTEAYNFINKMP-IT--  654 (857)
T ss_pred             CC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-------hHHHHHHHHHH-HhCCCHHHHHHHHHHCC-CC--
Confidence            43 355666677777888888888888887754333222       22455555555 47788888888888762 22  


Q ss_pred             CCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCccc
Q 036703          284 FSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFL  363 (365)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~~  363 (365)
                           |+..+|..+...+...|+.+.|....++++++.|++...+..++++|...|++++|.++.+.+.+..-.-.|..-
T Consensus       655 -----pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s  729 (857)
T PLN03077        655 -----PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCS  729 (857)
T ss_pred             -----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCcc
Confidence                 778888888888888889999999999999999999999999999999999999999998888776654445433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.91  E-value=8.7e-21  Score=148.35  Aligned_cols=324  Identities=11%  Similarity=0.033  Sum_probs=263.0

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA   94 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~   94 (365)
                      +|.+..-.+.+|.-++..|++..|+..|..|++.+|+ -.+.+..+..|...|.-..|+.-+.+.++..|+-..+.+..|
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence            4556666788888888899999999999999999998 577788888888889888899999999999998888888889


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH------------HHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703           95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV------------AFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus        95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      .++.++|++++|..-|...++. .|++ .....+..            .....+.   ..|+...|+......++..|..
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~-~~s~-~~~~eaqskl~~~~e~~~l~~ql~s~~---~~GD~~~ai~~i~~llEi~~Wd  188 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQH-EPSN-GLVLEAQSKLALIQEHWVLVQQLKSAS---GSGDCQNAIEMITHLLEIQPWD  188 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhc-CCCc-chhHHHHHHHHhHHHHHHHHHHHHHHh---cCCchhhHHHHHHHHHhcCcch
Confidence            9999999999999999999988 7765 11122222            2223334   6799999999999999999987


Q ss_pred             hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703          163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                        +.++..-+..+...|.+.        +|+.-+..+-++..++.+.++.++.++...|+.+.+....+++++.+|++..
T Consensus       189 --a~l~~~Rakc~i~~~e~k--------~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~  258 (504)
T KOG0624|consen  189 --ASLRQARAKCYIAEGEPK--------KAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL  258 (504)
T ss_pred             --hHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence              678888888888888865        7999999999999999999999999999999999999999999999999864


Q ss_pred             hhH-HHH---hHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHH
Q 036703          243 KRY-WQR---YIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYL  318 (365)
Q Consensus       243 ~~~-~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  318 (365)
                      ... |..   .+...- -+.-. ...+++.++++..++.++..|+...+-  ...+..+..++...|++.+|+....+++
T Consensus       259 Cf~~YKklkKv~K~le-s~e~~-ie~~~~t~cle~ge~vlk~ep~~~~ir--~~~~r~~c~C~~~d~~~~eAiqqC~evL  334 (504)
T KOG0624|consen  259 CFPFYKKLKKVVKSLE-SAEQA-IEEKHWTECLEAGEKVLKNEPEETMIR--YNGFRVLCTCYREDEQFGEAIQQCKEVL  334 (504)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHH-HhhhhHHHHHHHHHHHHhcCCccccee--eeeeheeeecccccCCHHHHHHHHHHHH
Confidence            211 111   111111 11111 356889999999999999986643221  3455666778888999999999999999


Q ss_pred             hhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703          319 EWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       319 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                      +.+|++++++...+..++....++.|+.-|++|.+.++.+
T Consensus       335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn  374 (504)
T KOG0624|consen  335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN  374 (504)
T ss_pred             hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence            9999999999999999999999999999999999998854

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.90  E-value=4.5e-20  Score=168.12  Aligned_cols=326  Identities=10%  Similarity=0.037  Sum_probs=235.7

Q ss_pred             HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHH
Q 036703           14 TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN   92 (365)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~   92 (365)
                      -..|+.+...+.-+.+..+.|+++.|+..|+++++.+|.. .....++.++...|+.++|+..+++++...|........
T Consensus        28 ~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~lla  107 (822)
T PRK14574         28 VVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLAS  107 (822)
T ss_pred             ccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHH
Confidence            3478889999999999999999999999999999999993 333388888889999999999999999444445555555


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHH
Q 036703           93 FADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL  172 (365)
Q Consensus        93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  172 (365)
                      +|.++...|++++|+++|+++++. .|++    +.++..++..+.   ..++.++|+..++++.+..|...   .+...+
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~-dP~n----~~~l~gLa~~y~---~~~q~~eAl~~l~~l~~~dp~~~---~~l~la  176 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKK-DPTN----PDLISGMIMTQA---DAGRGGVVLKQATELAERDPTVQ---NYMTLS  176 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh-CCCC----HHHHHHHHHHHh---hcCCHHHHHHHHHHhcccCcchH---HHHHHH
Confidence            688999999999999999999999 9998    899999999999   99999999999999999999852   234444


Q ss_pred             HHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHH---------------------------
Q 036703          173 AFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQER---------------------------  225 (365)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~---------------------------  225 (365)
                      .++...+...        +|+..|+++++.+|++.+++..+...+...|-...                           
T Consensus       177 yL~~~~~~~~--------~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~  248 (822)
T PRK14574        177 YLNRATDRNY--------DALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAE  248 (822)
T ss_pred             HHHHhcchHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHH
Confidence            4443333322        47778888888888777666555544443332222                           


Q ss_pred             ---------------------HHHHHHHHHhc---CCCchhh-------hH---------------HHH--------hHH
Q 036703          226 ---------------------VREVYERAIAN---VPPAEEK-------RY---------------WQR--------YIY  251 (365)
Q Consensus       226 ---------------------A~~~~~~~~~~---~p~~~~~-------~~---------------~~~--------~~~  251 (365)
                                           |..-++..+..   .|.....       .+               +..        -..
T Consensus       249 ~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y  328 (822)
T PRK14574        249 QVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY  328 (822)
T ss_pred             HHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH
Confidence                                 22222333331   2211000       00               000        001


Q ss_pred             HHHHHHHHH---------------------------------------hhccCChhHHHHHHHHHHhccccCC-------
Q 036703          252 LWINYALYK---------------------------------------EVDAGDLERTRDVYRTLFIFYFSFS-------  285 (365)
Q Consensus       252 ~~~~~~~~~---------------------------------------~~~~~~~~~a~~~~~~a~~~~~~~~-------  285 (365)
                      +....|..|                                       .+..+++++|..++++..+..|...       
T Consensus       329 ~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~  408 (822)
T PRK14574        329 ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPG  408 (822)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCC
Confidence            111112222                                       0355667777777777666433100       


Q ss_pred             Cc-chh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703          286 PR-MEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       286 ~~-~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                      .. -|+ .+.....+..+.-.|++.+|.+.+++.+...|.|+.+++.++.++...|.+.+|...++.+....|.+
T Consensus       409 ~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~  483 (822)
T PRK14574        409 KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS  483 (822)
T ss_pred             CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc
Confidence            00 033 56677778888899999999999999999999999999999999999999999999999999988843

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.90  E-value=5.2e-20  Score=160.64  Aligned_cols=317  Identities=13%  Similarity=0.133  Sum_probs=240.3

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      .....+.|......|+++.|..++..+++.+|. ..+|..+|.++..+|+.+++....-.|-..+|.+.+.|..+++...
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            455677788888899999999999999999999 7999999999999999999999999999999999999999999999


Q ss_pred             hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh---HHHHHHHHHHH
Q 036703           99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA---EDLYRKFLAFE  175 (365)
Q Consensus        99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~~~~~~~~  175 (365)
                      ++|++.+|+-+|.+|++. .|.+    .......+.++.   +.|+...|.+.|.+++..+|..+.   ...-...+...
T Consensus       219 ~~~~i~qA~~cy~rAI~~-~p~n----~~~~~ers~L~~---~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~  290 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQA-NPSN----WELIYERSSLYQ---KTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF  290 (895)
T ss_pred             hcccHHHHHHHHHHHHhc-CCcc----hHHHHHHHHHHH---HhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence            999999999999999999 9998    999999999999   999999999999999999995421   11222223333


Q ss_pred             HHcCCchhhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCchhh--hHHH--
Q 036703          176 KQYGDREGIEDAIAGKMRLQYEDGVRK--NPMNYDTWFDYIRLEERVGNQERVREVYERAIAN--VPPAEEK--RYWQ--  247 (365)
Q Consensus       176 ~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~--~~~~--  247 (365)
                      ...++.        +.|...++.++..  ..-..+-+..++.++.....++.|..........  .+++.+-  .-.+  
T Consensus       291 ~~~~~~--------e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~  362 (895)
T KOG2076|consen  291 ITHNER--------ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRRE  362 (895)
T ss_pred             HHhhHH--------HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccc
Confidence            333332        3688888888873  2223456778888888888899888777665541  1111100  0000  


Q ss_pred             -------------HhHHH-HHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHH
Q 036703          248 -------------RYIYL-WINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKL  313 (365)
Q Consensus       248 -------------~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  313 (365)
                                   -.+.+ .+..+.+   ..+..+....+............   ..++++..++..+...|++.+|+.+
T Consensus       363 ~~~~~~~~~~~~s~~l~v~rl~icL~---~L~~~e~~e~ll~~l~~~n~~~~---d~~dL~~d~a~al~~~~~~~~Al~~  436 (895)
T KOG2076|consen  363 EPNALCEVGKELSYDLRVIRLMICLV---HLKERELLEALLHFLVEDNVWVS---DDVDLYLDLADALTNIGKYKEALRL  436 (895)
T ss_pred             cccccccCCCCCCccchhHhHhhhhh---cccccchHHHHHHHHHHhcCChh---hhHHHHHHHHHHHHhcccHHHHHHH
Confidence                         00112 2222222   33333333333333333221100   2388999999999999999999999


Q ss_pred             HHHHHhhCcc-hHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703          314 YEKYLEWSPE-NCYAWSKYTELEKSLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       314 ~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                      |..+....+. +..+|..+|.+++..|.+++|...|++++...|.+
T Consensus       437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~  482 (895)
T KOG2076|consen  437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN  482 (895)
T ss_pred             HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence            9999988653 56799999999999999999999999999999954

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.90  E-value=8.3e-20  Score=156.54  Aligned_cols=286  Identities=12%  Similarity=0.119  Sum_probs=223.5

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHH-HHHHHHHhcCChhHHHHHHHHHHhhCCChH--HHHHHHHHHHHhccHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWN-NYIRMEENLGNVAGARQIFERWMHWMPDHE--GWLSYIKFKLRYNEVQRARHIFE   77 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~A~~~~~   77 (365)
                      |++.|++...+.-...+. +.+.. ..+....+.|+++.|...++++.+..|+..  .....+.++...|+++.|...++
T Consensus        99 d~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~  177 (398)
T PRK10747         99 DYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVD  177 (398)
T ss_pred             CHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            466777766665554333 44444 446666999999999999999999999942  33355889999999999999999


Q ss_pred             HHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH----HHHHHHHHHHHhccccchhHHHHHHHH
Q 036703           78 RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE----QLFVAFAKFEEMGCNCKETDRARCIYK  153 (365)
Q Consensus        78 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~  153 (365)
                      ++.+..|+++.+...++.++.+.|++++|.+++.+..+. .+.+.....    .++..+.....   ...+.+...++.+
T Consensus       178 ~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~-~~~~~~~~~~l~~~a~~~l~~~~~---~~~~~~~l~~~w~  253 (398)
T PRK10747        178 KLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKA-HVGDEEHRAMLEQQAWIGLMDQAM---ADQGSEGLKRWWK  253 (398)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHH---HhcCHHHHHHHHH
Confidence            999999999999999999999999999999999999988 655411111    12333222222   3333344444444


Q ss_pred             HHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703          154 FALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERA  233 (365)
Q Consensus       154 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  233 (365)
                      ..-+..|++  ..+...++......|+.+        +|...++++++. |.++.+...++.+  ..++.+++.+..++.
T Consensus       254 ~lp~~~~~~--~~~~~~~A~~l~~~g~~~--------~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~  320 (398)
T PRK10747        254 NQSRKTRHQ--VALQVAMAEHLIECDDHD--------TAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQ  320 (398)
T ss_pred             hCCHHHhCC--HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHH
Confidence            443344433  678899999999999866        689999999994 5566666666665  459999999999999


Q ss_pred             HhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHH
Q 036703          234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKL  313 (365)
Q Consensus       234 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  313 (365)
                      ++..|+++.         +.+.+|.++ ...+++++|++.|+++++..       |+...+..++.++.+.|+.++|..+
T Consensus       321 lk~~P~~~~---------l~l~lgrl~-~~~~~~~~A~~~le~al~~~-------P~~~~~~~La~~~~~~g~~~~A~~~  383 (398)
T PRK10747        321 IKQHGDTPL---------LWSTLGQLL-MKHGEWQEASLAFRAALKQR-------PDAYDYAWLADALDRLHKPEEAAAM  383 (398)
T ss_pred             HhhCCCCHH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999964         777888887 69999999999999999998       7777778999999999999999999


Q ss_pred             HHHHHhhC
Q 036703          314 YEKYLEWS  321 (365)
Q Consensus       314 ~~~al~~~  321 (365)
                      |++++.+.
T Consensus       384 ~~~~l~~~  391 (398)
T PRK10747        384 RRDGLMLT  391 (398)
T ss_pred             HHHHHhhh
Confidence            99998763

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.89  E-value=3.8e-20  Score=144.80  Aligned_cols=301  Identities=17%  Similarity=0.088  Sum_probs=249.3

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++..|...|..+++.+|++..+++..|..|+..|+...|+.-+.+.+++.|+ ..+....+.++.++|.+++|..-|...
T Consensus        53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~v  132 (504)
T KOG0624|consen   53 QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQV  132 (504)
T ss_pred             hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999 678889999999999999999999999


Q ss_pred             HHhCCcch---HHHHHHH------------HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703           80 VQCHPYNL---SAWINFA------------DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE  144 (365)
Q Consensus        80 l~~~p~~~---~~~~~~~------------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (365)
                      ++.+|++.   ++...++            ..+...|+...|+......++. .|-+    ..++...+.+|.   ..|+
T Consensus       133 l~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wd----a~l~~~Rakc~i---~~~e  204 (504)
T KOG0624|consen  133 LQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWD----ASLRQARAKCYI---AEGE  204 (504)
T ss_pred             HhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-Ccch----hHHHHHHHHHHH---hcCc
Confidence            99999532   2222222            2344568999999999999999 9988    999999999999   9999


Q ss_pred             hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----------
Q 036703          145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDY-----------  213 (365)
Q Consensus       145 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~-----------  213 (365)
                      +..|+.-++.+-+...++  .+..+....++...|+..        .+....+.+|+.+|++...+-.+           
T Consensus       205 ~k~AI~Dlk~askLs~Dn--Te~~ykis~L~Y~vgd~~--------~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~le  274 (504)
T KOG0624|consen  205 PKKAIHDLKQASKLSQDN--TEGHYKISQLLYTVGDAE--------NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLE  274 (504)
T ss_pred             HHHHHHHHHHHHhccccc--hHHHHHHHHHHHhhhhHH--------HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHH
Confidence            999999999988876665  678888888888888855        58888899999999986543222           


Q ss_pred             -HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-H
Q 036703          214 -IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-R  291 (365)
Q Consensus       214 -~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~  291 (365)
                       +.-....++|.++.+..++.++..|......     +........++ ..-+.+.+|+....+++...       |+ .
T Consensus       275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir-----~~~~r~~c~C~-~~d~~~~eAiqqC~evL~~d-------~~dv  341 (504)
T KOG0624|consen  275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIR-----YNGFRVLCTCY-REDEQFGEAIQQCKEVLDID-------PDDV  341 (504)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCccccee-----eeeeheeeecc-cccCCHHHHHHHHHHHHhcC-------chHH
Confidence             1223557899999999999999999854321     11222234444 46789999999999999998       55 8


Q ss_pred             HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHH
Q 036703          292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYT  332 (365)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~  332 (365)
                      +++..-++.++...+++.|+.-|++|++.+|+|..+...+-
T Consensus       342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle  382 (504)
T KOG0624|consen  342 QVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLE  382 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            88899999999999999999999999999999877665543

>PLN03077 Protein ECB2; Provisional

Probab=99.89  E-value=4.1e-20  Score=174.45  Aligned_cols=314  Identities=11%  Similarity=0.064  Sum_probs=253.9

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh--CCChHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW--MPDHEGWLSYIKFKLRYNEVQRARHIFER   78 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~A~~~~~~   78 (365)
                      +++.|+.+|++..  .| +...|..++..+.+.|++++|..+|+++.+.  .|+..++..+...+.+.|+.+.|.+++..
T Consensus       338 ~~~~A~~vf~~m~--~~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~  414 (857)
T PLN03077        338 SWGEAEKVFSRME--TK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL  414 (857)
T ss_pred             CHHHHHHHHhhCC--CC-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence            4678999999864  34 4678999999999999999999999998764  47777888888899999999999999999


Q ss_pred             HHHhCC-cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703           79 LVQCHP-YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus        79 ~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      +++... .+..++..+...|.+.|++++|.++|+++.+.    +    ...|..++..+.   ..|+.++|+.+|++++.
T Consensus       415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d----~vs~~~mi~~~~---~~g~~~eA~~lf~~m~~  483 (857)
T PLN03077        415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----D----VISWTSIIAGLR---LNNRCFEALIFFRQMLL  483 (857)
T ss_pred             HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----C----eeeHHHHHHHHH---HCCCHHHHHHHHHHHHh
Confidence            998643 36788999999999999999999999986543    2    568999999999   99999999999999886


Q ss_pred             cCCCchhHHHHH-----------------------------------HHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703          158 RIPKGRAEDLYR-----------------------------------KFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK  202 (365)
Q Consensus       158 ~~p~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~  202 (365)
                      ..+.+  ...+.                                   .++..+.+.|+.        +.|...|+..   
T Consensus       484 ~~~pd--~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~--------~~A~~~f~~~---  550 (857)
T PLN03077        484 TLKPN--SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM--------NYAWNQFNSH---  550 (857)
T ss_pred             CCCCC--HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH--------HHHHHHHHhc---
Confidence            43332  11222                                   233444455543        3677777775   


Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703          203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIAN--VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF  280 (365)
Q Consensus       203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  280 (365)
                       +.+...|..++..+...|+.++|..+|+++.+.  .|+..          .+..+...+ .+.|.+++|..+|+.+.+.
T Consensus       551 -~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~----------T~~~ll~a~-~~~g~v~ea~~~f~~M~~~  618 (857)
T PLN03077        551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV----------TFISLLCAC-SRSGMVTQGLEYFHSMEEK  618 (857)
T ss_pred             -CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc----------cHHHHHHHH-hhcChHHHHHHHHHHHHHH
Confidence             567889999999999999999999999998875  45542          233333344 4889999999999999854


Q ss_pred             cccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCC
Q 036703          281 YFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDL  359 (365)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~  359 (365)
                      .+-.    |+...|..+++++.+.|++++|.++++++ ...| +..+|..+...+...|+.+.+....++++++.|.+.
T Consensus       619 ~gi~----P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~  691 (857)
T PLN03077        619 YSIT----PNLKHYACVVDLLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV  691 (857)
T ss_pred             hCCC----CchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence            3222    77889999999999999999999999986 3566 688999999999999999999999999999999543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=4.7e-20  Score=147.61  Aligned_cols=295  Identities=13%  Similarity=0.058  Sum_probs=200.4

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703            9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL   87 (365)
Q Consensus         9 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~   87 (365)
                      +-.-....|+|..+...+|.++...|+.++|+-.|+++..++|. ....-.|+.++...|++++-..+-...+.......
T Consensus       221 ~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta  300 (564)
T KOG1174|consen  221 MLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTA  300 (564)
T ss_pred             HHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcch
Confidence            33444556777777777777777777777777777777777777 55555666666677777777777777777665566


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHH
Q 036703           88 SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDL  167 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  167 (365)
                      .-|+--+......+++..|+.+-+++++. .|.+    ...++..|..+.   ..|+.++|.-.|+.++...|..  .+.
T Consensus       301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~-~~r~----~~alilKG~lL~---~~~R~~~A~IaFR~Aq~Lap~r--L~~  370 (564)
T KOG1174|consen  301 SHWFVHAQLLYDEKKFERALNFVEKCIDS-EPRN----HEALILKGRLLI---ALERHTQAVIAFRTAQMLAPYR--LEI  370 (564)
T ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHhcc-Cccc----chHHHhccHHHH---hccchHHHHHHHHHHHhcchhh--HHH
Confidence            66777777777777777777777777777 6666    677777777777   7777777777777777776654  566


Q ss_pred             HHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH-HH-HHHhCCHHHHHHHHHHHHhcCCCchhhhH
Q 036703          168 YRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYI-RL-EERVGNQERVREVYERAIANVPPAEEKRY  245 (365)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~-~~-~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  245 (365)
                      |..++..+...|...        +|.-.-+.+++..|.+...+..+| .+ .....--++|.++++++++..|.-     
T Consensus       371 Y~GL~hsYLA~~~~k--------EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-----  437 (564)
T KOG1174|consen  371 YRGLFHSYLAQKRFK--------EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-----  437 (564)
T ss_pred             HHHHHHHHHhhchHH--------HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-----
Confidence            777777666666543        455666666666677776666665 32 233344566777777777777764     


Q ss_pred             HHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchH
Q 036703          246 WQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENC  325 (365)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  325 (365)
                          +......+.+. ...|.+..++.++++.+...       |+..+...+|++....+.+.+|.+.|..|+.++|++-
T Consensus       438 ----~~AV~~~AEL~-~~Eg~~~D~i~LLe~~L~~~-------~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  438 ----TPAVNLIAELC-QVEGPTKDIIKLLEKHLIIF-------PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK  505 (564)
T ss_pred             ----HHHHHHHHHHH-HhhCccchHHHHHHHHHhhc-------cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence                33555556654 45677777777777777766       6666777777777777777777777777777777776


Q ss_pred             HHHHHHHHHHhhc
Q 036703          326 YAWSKYTELEKSL  338 (365)
Q Consensus       326 ~~~~~~~~~~~~~  338 (365)
                      .....+-.++...
T Consensus       506 ~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  506 RTLRGLRLLEKSD  518 (564)
T ss_pred             HHHHHHHHHHhcc
Confidence            6666655555443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.89  E-value=4.6e-20  Score=167.15  Aligned_cols=251  Identities=24%  Similarity=0.399  Sum_probs=222.7

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh-hCCC-----hHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703            5 GRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMH-WMPD-----HEGWLSYIKFKLRYNEVQRARHIFER   78 (365)
Q Consensus         5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~   78 (365)
                      ..+-|++.+..+|++.-.|+.|..+.++.++.++|++++++||. +++.     ..+|..+.+++...|.-+...++|++
T Consensus      1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred             CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence            35679999999999999999999999999999999999999995 5554     46999999999999999999999999


Q ss_pred             HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703           79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus        79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      |.+.+. ...++..+..+|...+.+++|.++|+.+++. +...    ..+|..++.++.   ++++-+.|+.++++|++.
T Consensus      1523 Acqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~----~~vW~~y~~fLl---~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1523 ACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQT----RKVWIMYADFLL---RQNEAEAARELLKRALKS 1593 (1710)
T ss_pred             HHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcch----hhHHHHHHHHHh---cccHHHHHHHHHHHHHhh
Confidence            999876 6889999999999999999999999999999 8765    999999999999   999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703          159 IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP  238 (365)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  238 (365)
                      .|...+..+...+++++.++|+.+        +++.+|+-.+...|.-.++|..|++.....|+.+.++.+|++++...-
T Consensus      1594 lPk~eHv~~IskfAqLEFk~GDae--------RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAE--------RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred             cchhhhHHHHHHHHHHHhhcCCch--------hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence            999878999999999999999987        699999999999999999999999999999999999999999998743


Q ss_pred             C-chhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703          239 P-AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF  280 (365)
Q Consensus       239 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  280 (365)
                      . .....       ++..|..++ ...|+-..+..+=.+|.+.
T Consensus      1666 ~~kkmKf-------ffKkwLeyE-k~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1666 SIKKMKF-------FFKKWLEYE-KSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred             ChhHhHH-------HHHHHHHHH-HhcCchhhHHHHHHHHHHH
Confidence            3 33322       445555554 5778877776666666654

>PRK12370 invasion protein regulator; Provisional

Probab=99.88  E-value=2.6e-20  Score=166.31  Aligned_cols=234  Identities=10%  Similarity=-0.067  Sum_probs=164.1

Q ss_pred             hCCCchHHHHHHH--HHHH---hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh---------ccHHHHHHHHHHH
Q 036703           15 LSPRVDQLWNNYI--RMEE---NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRY---------NEVQRARHIFERL   79 (365)
Q Consensus        15 ~~p~~~~~~~~~~--~~~~---~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~---------~~~~~A~~~~~~~   79 (365)
                      ..|.+.++|..+.  ....   ..++.++|+..|+++++.+|+ ...|..++.++...         +++++|...++++
T Consensus       251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A  330 (553)
T PRK12370        251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA  330 (553)
T ss_pred             CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            4555555544432  2222   234678888888888888888 66777777665432         3478888888888


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  159 (365)
                      ++.+|+++.++..+|.++...|++++|+..|+++++. .|++    +.++..+|.++.   ..|++++|+..++++++..
T Consensus       331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-~P~~----~~a~~~lg~~l~---~~G~~~eAi~~~~~Al~l~  402 (553)
T PRK12370        331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-SPIS----ADIKYYYGWNLF---MAGQLEEALQTINECLKLD  402 (553)
T ss_pred             HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcC
Confidence            8888888888888888888888888888888888888 8887    888888888888   8888888888888888888


Q ss_pred             CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703          160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN-PMNYDTWFDYIRLEERVGNQERVREVYERAIANVP  238 (365)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  238 (365)
                      |.+..  .+...+......|+.+        +|+..+++++... |+++..+..++.++...|++++|+..+.+.....|
T Consensus       403 P~~~~--~~~~~~~~~~~~g~~e--------eA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~  472 (553)
T PRK12370        403 PTRAA--AGITKLWITYYHTGID--------DAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI  472 (553)
T ss_pred             CCChh--hHHHHHHHHHhccCHH--------HHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence            87532  2222222333455543        5888888888764 67777888888888888888888888888777666


Q ss_pred             CchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 036703          239 PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF  278 (365)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~  278 (365)
                      .+..         .+..++..+ ...|  ++|...+++.+
T Consensus       473 ~~~~---------~~~~l~~~~-~~~g--~~a~~~l~~ll  500 (553)
T PRK12370        473 TGLI---------AVNLLYAEY-CQNS--ERALPTIREFL  500 (553)
T ss_pred             hhHH---------HHHHHHHHH-hccH--HHHHHHHHHHH
Confidence            6432         344444443 2444  35555555444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=4.8e-21  Score=148.82  Aligned_cols=260  Identities=13%  Similarity=0.130  Sum_probs=162.1

Q ss_pred             HhcCChhHHHHHHHHHHhh---CCC------hHH-H-HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703           31 ENLGNVAGARQIFERWMHW---MPD------HEG-W-LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK   99 (365)
Q Consensus        31 ~~~g~~~~A~~~~~~al~~---~p~------~~~-~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~   99 (365)
                      ....++..|.......++.   .|+      .+. | ..++++|.+.|-+.+|...++.++...| .++.+..++.+|.+
T Consensus       190 yhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~r  268 (478)
T KOG1129|consen  190 YHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQR  268 (478)
T ss_pred             HhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHH
Confidence            3445666666555444432   122      222 3 3467888888888888888888888888 88888888888888


Q ss_pred             hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcC
Q 036703          100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG  179 (365)
Q Consensus       100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  179 (365)
                      ..+...|+.+|...++. +|.+    .......+.++.   ..+++++|.++|+.+++..|.+..  .....+.-+.-.+
T Consensus       269 idQP~~AL~~~~~gld~-fP~~----VT~l~g~ARi~e---am~~~~~a~~lYk~vlk~~~~nvE--aiAcia~~yfY~~  338 (478)
T KOG1129|consen  269 IDQPERALLVIGEGLDS-FPFD----VTYLLGQARIHE---AMEQQEDALQLYKLVLKLHPINVE--AIACIAVGYFYDN  338 (478)
T ss_pred             hccHHHHHHHHhhhhhc-CCch----hhhhhhhHHHHH---HHHhHHHHHHHHHHHHhcCCccce--eeeeeeeccccCC
Confidence            88888888888888888 8887    888888888888   888888888888888877776521  1111111111222


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHH
Q 036703          180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY  259 (365)
Q Consensus       180 ~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  259 (365)
                      +++        .|...|++.|++.-.+++++.++|.+....++++-+...|++++........                 
T Consensus       339 ~PE--------~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~-----------------  393 (478)
T KOG1129|consen  339 NPE--------MALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ-----------------  393 (478)
T ss_pred             ChH--------HHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch-----------------
Confidence            222        4566666666666666666666666665566666666666665554322111                 


Q ss_pred             HhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhcc
Q 036703          260 KEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD  339 (365)
Q Consensus       260 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  339 (365)
                                                    ..++|++++.+....|++..|..+|+-++..+|++...+++++-+..+.|
T Consensus       394 ------------------------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G  443 (478)
T KOG1129|consen  394 ------------------------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSG  443 (478)
T ss_pred             ------------------------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcC
Confidence                                          13444555554445555555555555555555555555555555555555


Q ss_pred             chhHHHHHHHHHhcCcC
Q 036703          340 ETERARAIFELAIAQPI  356 (365)
Q Consensus       340 ~~~~A~~~~~~a~~~~~  356 (365)
                      +++.|+.++..+-...|
T Consensus       444 ~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  444 DILGARSLLNAAKSVMP  460 (478)
T ss_pred             chHHHHHHHHHhhhhCc
Confidence            55555555555555544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.88  E-value=1e-19  Score=149.60  Aligned_cols=223  Identities=14%  Similarity=0.116  Sum_probs=176.6

Q ss_pred             hhHHHHHHHHHHhC---CCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLS---PRV-DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFE   77 (365)
Q Consensus         3 ~~A~~~~~~~l~~~---p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~   77 (365)
                      +.++..+.+++...   |.. +..|..+|.++...|+.++|+..|+++++.+|+ ..+|..+|.++...|++++|...|+
T Consensus        43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~  122 (296)
T PRK11189         43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFD  122 (296)
T ss_pred             HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            56778888888643   333 677999999999999999999999999999999 8999999999999999999999999


Q ss_pred             HHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703           78 RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus        78 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      ++++.+|++..+|..+|.++...|++++|++.|+++++. .|++    +.. ..+..+..   ..+++++|+..|++++.
T Consensus       123 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-~P~~----~~~-~~~~~l~~---~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        123 SVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-DPND----PYR-ALWLYLAE---SKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC----HHH-HHHHHHHH---ccCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999 9987    421 11223345   67889999999988775


Q ss_pred             cCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 036703          158 RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANV  237 (365)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  237 (365)
                      ..+..    .|. ........|+....  ...+.+...++...+..|...++|+.+|.++...|++++|+..|+++++.+
T Consensus       194 ~~~~~----~~~-~~~~~~~lg~~~~~--~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        194 KLDKE----QWG-WNIVEFYLGKISEE--TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             hCCcc----ccH-HHHHHHHccCCCHH--HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            44332    222 12222234443321  012233333444556677788999999999999999999999999999999


Q ss_pred             CCch
Q 036703          238 PPAE  241 (365)
Q Consensus       238 p~~~  241 (365)
                      |.+.
T Consensus       267 ~~~~  270 (296)
T PRK11189        267 VYNF  270 (296)
T ss_pred             CchH
Confidence            8653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.88  E-value=5.7e-21  Score=148.39  Aligned_cols=201  Identities=16%  Similarity=0.173  Sum_probs=167.8

Q ss_pred             HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703          130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT  209 (365)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~  209 (365)
                      ..+|++|.   +.|-+.+|.+.++.+++..|.   .+-+..+...+.....+.        .|..+|...+...|.++..
T Consensus       227 ~Q~gkCyl---rLgm~r~AekqlqssL~q~~~---~dTfllLskvY~ridQP~--------~AL~~~~~gld~fP~~VT~  292 (478)
T KOG1129|consen  227 QQMGKCYL---RLGMPRRAEKQLQSSLTQFPH---PDTFLLLSKVYQRIDQPE--------RALLVIGEGLDSFPFDVTY  292 (478)
T ss_pred             HHHHHHHH---HhcChhhhHHHHHHHhhcCCc---hhHHHHHHHHHHHhccHH--------HHHHHHhhhhhcCCchhhh
Confidence            46788888   999999999999999887776   456666777777766655        6889999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcch
Q 036703          210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRME  289 (365)
Q Consensus       210 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~  289 (365)
                      ....+.++...+++++|.++|+.+++..|.+.+         ..-..+.-+ .-.++++-|+.+|.+.++...      .
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE---------aiAcia~~y-fY~~~PE~AlryYRRiLqmG~------~  356 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVE---------AIACIAVGY-FYDNNPEMALRYYRRILQMGA------Q  356 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce---------eeeeeeecc-ccCCChHHHHHHHHHHHHhcC------C
Confidence            999999999999999999999999999998854         222222222 356889999999999999852      3


Q ss_pred             hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc---chHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703          290 ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP---ENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE  361 (365)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~  361 (365)
                      ++++|+++|-+++-.++++-+...|++++....   .-.++|.+++.+....||+.-|...|+-++..++ +..+
T Consensus       357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~e  430 (478)
T KOG1129|consen  357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGE  430 (478)
T ss_pred             ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHH
Confidence            488999999999999999999999999998743   2568999999999999999999999999999888 4443

>PRK12370 invasion protein regulator; Provisional

Probab=99.87  E-value=5.1e-19  Score=158.09  Aligned_cols=251  Identities=10%  Similarity=0.002  Sum_probs=204.6

Q ss_pred             ccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh---------cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           67 NEVQRARHIFERLVQCHPYNLSAWINFADFEMKM---------GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        67 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      +++++|+..|+++++.+|+++..|..+|.++...         +++++|...++++++. .|++    +.++..+|.++.
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-dP~~----~~a~~~lg~~~~  349 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-DHNN----PQALGLLGLINT  349 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHH
Confidence            5689999999999999999999999999877643         3478999999999999 9998    999999999999


Q ss_pred             hccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 036703          138 MGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLE  217 (365)
Q Consensus       138 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~  217 (365)
                         ..|++++|...|+++++.+|++  ...+..++..+...|+.+        +|+..++++++.+|.++..+..++..+
T Consensus       350 ---~~g~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~l~~~G~~~--------eAi~~~~~Al~l~P~~~~~~~~~~~~~  416 (553)
T PRK12370        350 ---IHSEYIVGSLLFKQANLLSPIS--ADIKYYYGWNLFMAGQLE--------EALQTINECLKLDPTRAAAGITKLWIT  416 (553)
T ss_pred             ---HccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence               9999999999999999999987  567888888888899866        699999999999999987766666667


Q ss_pred             HHhCCHHHHHHHHHHHHhcC-CCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHH
Q 036703          218 ERVGNQERVREVYERAIANV-PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFK  295 (365)
Q Consensus       218 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~  295 (365)
                      ...|++++|+..+++++... |.++.         .+..++.++ ...|++++|+..+.+.....       |. .....
T Consensus       417 ~~~g~~eeA~~~~~~~l~~~~p~~~~---------~~~~la~~l-~~~G~~~eA~~~~~~~~~~~-------~~~~~~~~  479 (553)
T PRK12370        417 YYHTGIDDAIRLGDELRSQHLQDNPI---------LLSMQVMFL-SLKGKHELARKLTKEISTQE-------ITGLIAVN  479 (553)
T ss_pred             HhccCHHHHHHHHHHHHHhccccCHH---------HHHHHHHHH-HhCCCHHHHHHHHHHhhhcc-------chhHHHHH
Confidence            77899999999999999876 54532         566677776 58999999999999987765       44 44556


Q ss_pred             HHHHHHHHhCCCccHHHHHHHHHhhC---cchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703          296 KYIEMELCLGNIDPCRKLYEKYLEWS---PENCYAWSKYTELEKSLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       296 ~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                      .++..+...|+  +|...+++.++..   |.++..   ...++.-.|+.+.+.-. +++.+.....
T Consensus       480 ~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~~~~  539 (553)
T PRK12370        480 LLYAEYCQNSE--RALPTIREFLESEQRIDNNPGL---LPLVLVAHGEAIAEKMW-NKFKNEDNIW  539 (553)
T ss_pred             HHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH---HHHHHHHHhhhHHHHHH-HHhhccchHh
Confidence            66777777774  8888888876653   333332   67777788888888777 7777665533

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.87  E-value=3.5e-18  Score=141.39  Aligned_cols=333  Identities=19%  Similarity=0.331  Sum_probs=238.2

Q ss_pred             HHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH
Q 036703           10 DRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS   88 (365)
Q Consensus        10 ~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~   88 (365)
                      ++-++.+|.+.++|..+.+-+..+ -+++++..|++.+...|. +..|..++..+...++++....+|.+++...- +.+
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlD   87 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLD   87 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHh
Confidence            567888999999999999988887 899999999999999999 89999999999999999999999999998877 699


Q ss_pred             HHHHHHHHHHhh-cch----HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHh------ccccchhHHHHHHHHHHhc
Q 036703           89 AWINFADFEMKM-GEV----DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM------GCNCKETDRARCIYKFALD  157 (365)
Q Consensus        89 ~~~~~~~~~~~~-~~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~l~  157 (365)
                      +|..+...-.+. |..    +.-.+.|+-++.. .+-+ ..+..+|..++.++..      .+.+.+++..+++|++++.
T Consensus        88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~k-ig~d-i~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~  165 (656)
T KOG1914|consen   88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEK-IGMD-IKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV  165 (656)
T ss_pred             HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHH-hccC-cccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence            999988876664 333    3344567777776 5533 4557888888887761      1233466677777777775


Q ss_pred             cCCCchhHHHHHHHHHHHHH------------------------------------------------------------
Q 036703          158 RIPKGRAEDLYRKFLAFEKQ------------------------------------------------------------  177 (365)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~------------------------------------------------------------  177 (365)
                      . |-.....+|..|..++..                                                            
T Consensus       166 t-Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I  244 (656)
T KOG1914|consen  166 T-PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWI  244 (656)
T ss_pred             C-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHH
Confidence            3 333334555555544443                                                            


Q ss_pred             -----cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--------------HHHHHHHHHHHHhcCC
Q 036703          178 -----YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGN--------------QERVREVYERAIANVP  238 (365)
Q Consensus       178 -----~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~~~~~~p  238 (365)
                           .+-.......+..+..-+|++++..-+.++++|+.++......++              .+++.++|++++....
T Consensus       245 ~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~  324 (656)
T KOG1914|consen  245 KWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL  324 (656)
T ss_pred             HHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence                 221111111122445557788888889999999999988877776              7788999998886533


Q ss_pred             Cchhh----------------------hHHH--------HhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc
Q 036703          239 PAEEK----------------------RYWQ--------RYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM  288 (365)
Q Consensus       239 ~~~~~----------------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~  288 (365)
                      .....                      ..++        .+..+|+.+..+. .+....+.|+.+|.+|-+....     
T Consensus       325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~i-rR~eGlkaaR~iF~kaR~~~r~-----  398 (656)
T KOG1914|consen  325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFI-RRAEGLKAARKIFKKAREDKRT-----  398 (656)
T ss_pred             HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHH-HHhhhHHHHHHHHHHHhhccCC-----
Confidence            22100                      0000        0112445555554 3555566777777777665311     


Q ss_pred             hhHHHHHHHHHHHH-HhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703          289 EERRIFKKYIEMEL-CLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQ  354 (365)
Q Consensus       289 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  354 (365)
                      + ..+|..-|-++. ..++..-|..+|+-.+...++++..-..+..++...|+...++.+|++++..
T Consensus       399 ~-hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  399 R-HHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             c-chhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            1 345555555544 5688999999999999999999999999999999999999999999999987

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.87  E-value=2.1e-19  Score=133.24  Aligned_cols=207  Identities=17%  Similarity=0.160  Sum_probs=185.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      ..+.+.+|.-|++.|++..|...++++++.+|+ ..+|..++.+|...|+.+.|.+.|+++++++|++.++..++|-+++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            466889999999999999999999999999999 7999999999999999999999999999999999999999999999


Q ss_pred             hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHc
Q 036703           99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY  178 (365)
Q Consensus        99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  178 (365)
                      .+|++++|...|++|+..  |.- +.....|.++|.+..   +.|+++.|...|++++..+|+.  ......++..+...
T Consensus       115 ~qg~~~eA~q~F~~Al~~--P~Y-~~~s~t~eN~G~Cal---~~gq~~~A~~~l~raL~~dp~~--~~~~l~~a~~~~~~  186 (250)
T COG3063         115 AQGRPEEAMQQFERALAD--PAY-GEPSDTLENLGLCAL---KAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKA  186 (250)
T ss_pred             hCCChHHHHHHHHHHHhC--CCC-CCcchhhhhhHHHHh---hcCCchhHHHHHHHHHHhCcCC--ChHHHHHHHHHHhc
Confidence            999999999999999986  221 233789999999999   9999999999999999999987  45677778888888


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703          179 GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       179 ~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                      |+..        .|+..+++.....+-..+.+..-+.+....|+.+.+..+=.+.....|.+.+
T Consensus       187 ~~y~--------~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e  242 (250)
T COG3063         187 GDYA--------PARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE  242 (250)
T ss_pred             ccch--------HHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            8865        5889999988888888888888889999999999988877777788998864

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.87  E-value=2.6e-18  Score=147.81  Aligned_cols=331  Identities=17%  Similarity=0.119  Sum_probs=239.3

Q ss_pred             hHHHHHHHHHHhC--CCchHHHHHH-HHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHH---------
Q 036703            4 HGRNAWDRVVTLS--PRVDQLWNNY-IRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLR---------   65 (365)
Q Consensus         4 ~A~~~~~~~l~~~--p~~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~---------   65 (365)
                      .|..+.+..+...  |+++.....- ..+..+.|..++++.+..+++...-.      +..+..+|-.|..         
T Consensus       375 ~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s  454 (799)
T KOG4162|consen  375 KAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS  454 (799)
T ss_pred             HHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence            4555666666665  5554443333 33444556667777777777652211      2334444433321         


Q ss_pred             --hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703           66 --YNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK  143 (365)
Q Consensus        66 --~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (365)
                        .--..++.+.++++++.+|+|+.+.+.++..|...++.+.|.+...++++. .+.+   +...|..++.+..   .++
T Consensus       455 eR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-~~~~---~~~~whLLALvlS---a~k  527 (799)
T KOG4162|consen  455 ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-NRGD---SAKAWHLLALVLS---AQK  527 (799)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-cCCc---cHHHHHHHHHHHh---hhh
Confidence              123567888999999999999999999999999999999999999999999 6654   5899999999999   999


Q ss_pred             hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHH-----------------------------------H
Q 036703          144 ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDA-----------------------------------I  188 (365)
Q Consensus       144 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~  188 (365)
                      ++.+|+.+...++...|.+.  .+...-+.++...++.++.-+.                                   .
T Consensus       528 r~~~Al~vvd~al~E~~~N~--~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q  605 (799)
T KOG4162|consen  528 RLKEALDVVDAALEEFGDNH--VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQ  605 (799)
T ss_pred             hhHHHHHHHHHHHHHhhhhh--hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccc
Confidence            99999999999998877731  1111111111111111100000                                   0


Q ss_pred             HHHHHHHHHHHHH--------c-------------CCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703          189 AGKMRLQYEDGVR--------K-------------NPMN-----YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       189 ~~~a~~~~~~~l~--------~-------------~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                      ...+...+.++..        .             .|.+     ..+|...+..+...+..++|..++.++-+.+|... 
T Consensus       606 ~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~-  684 (799)
T KOG4162|consen  606 PTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA-  684 (799)
T ss_pred             ccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH-
Confidence            0111122211111        1             1121     25688889999999999999999999999999874 


Q ss_pred             hhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHH--HHHHHHh
Q 036703          243 KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRK--LYEKYLE  319 (365)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~--~~~~al~  319 (365)
                              .+|...|... ...|...+|.+.|..++.++       |+ +.....+|.++.+.|+..-|..  ++..+++
T Consensus       685 --------~~~~~~G~~~-~~~~~~~EA~~af~~Al~ld-------P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  685 --------SVYYLRGLLL-EVKGQLEEAKEAFLVALALD-------PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             --------HHHHHhhHHH-HHHHhhHHHHHHHHHHHhcC-------CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence                    3777777777 48899999999999999999       55 6677899999999998887777  9999999


Q ss_pred             hCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703          320 WSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE  361 (365)
Q Consensus       320 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~  361 (365)
                      .+|.++++|..+|.+....|+.++|.+.|+-++++.+ ..|-
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV  789 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPV  789 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCc
Confidence            9999999999999999999999999999999999987 4443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1.6e-18  Score=138.87  Aligned_cols=299  Identities=11%  Similarity=0.046  Sum_probs=247.9

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchH
Q 036703           26 YIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVD  104 (365)
Q Consensus        26 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  104 (365)
                      ++.++....-...+..++-.-....|+ ..+...+++++...|++.+|+..|+++...+|.+....-.+|-++.+.|+++
T Consensus       204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e  283 (564)
T KOG1174|consen  204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE  283 (564)
T ss_pred             HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence            344443333344455555555666777 7888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhh
Q 036703          105 RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGI  184 (365)
Q Consensus       105 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  184 (365)
                      +-.++....... ...    ...-|+-.+....   ..+++..|+.+-+++|..+|.+  ...+..-+.+....+...  
T Consensus       284 ~~~~L~~~Lf~~-~~~----ta~~wfV~~~~l~---~~K~~~rAL~~~eK~I~~~~r~--~~alilKG~lL~~~~R~~--  351 (564)
T KOG1174|consen  284 QDSALMDYLFAK-VKY----TASHWFVHAQLLY---DEKKFERALNFVEKCIDSEPRN--HEALILKGRLLIALERHT--  351 (564)
T ss_pred             hHHHHHHHHHhh-hhc----chhhhhhhhhhhh---hhhhHHHHHHHHHHHhccCccc--chHHHhccHHHHhccchH--
Confidence            999888888877 433    3777888888888   8999999999999999999987  455566666677777755  


Q ss_pred             hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH-HHHhhc
Q 036703          185 EDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA-LYKEVD  263 (365)
Q Consensus       185 ~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~  263 (365)
                            .|...|+.+..+-|...+.+..+...|...|.+.+|.-.-..+++..|.+..         .....| ......
T Consensus       352 ------~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~---------~LtL~g~~V~~~d  416 (564)
T KOG1174|consen  352 ------QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR---------SLTLFGTLVLFPD  416 (564)
T ss_pred             ------HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh---------hhhhhcceeeccC
Confidence                  6999999999999999999999999999999999999999999999998854         222232 111124


Q ss_pred             cCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchh
Q 036703          264 AGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETE  342 (365)
Q Consensus       264 ~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  342 (365)
                      .-.-++|.+++++++++.       |. .......++++...|...++++++++.+...| +..+...++++....+.+.
T Consensus       417 p~~rEKAKkf~ek~L~~~-------P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q  488 (564)
T KOG1174|consen  417 PRMREKAKKFAEKSLKIN-------PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQ  488 (564)
T ss_pred             chhHHHHHHHHHhhhccC-------CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHH
Confidence            445689999999999998       55 44557889999999999999999999999988 6678899999999999999


Q ss_pred             HHHHHHHHHhcCcCCCC
Q 036703          343 RARAIFELAIAQPILDL  359 (365)
Q Consensus       343 ~A~~~~~~a~~~~~~~~  359 (365)
                      +|.+.|..|+.++|.+.
T Consensus       489 ~am~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  489 KAMEYYYKALRQDPKSK  505 (564)
T ss_pred             HHHHHHHHHHhcCccch
Confidence            99999999999999653

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.86  E-value=2.9e-19  Score=146.90  Aligned_cols=228  Identities=17%  Similarity=0.157  Sum_probs=182.5

Q ss_pred             hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcC
Q 036703          100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG  179 (365)
Q Consensus       100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  179 (365)
                      .+..+.++..+.+++.. .|.++......|+..|.++.   ..|+.++|+..|+++++..|+.  ...|..++..+...|
T Consensus        39 ~~~~e~~i~~~~~~l~~-~~~~~~~~a~~~~~~g~~~~---~~g~~~~A~~~~~~Al~l~P~~--~~a~~~lg~~~~~~g  112 (296)
T PRK11189         39 TLQQEVILARLNQILAS-RDLTDEERAQLHYERGVLYD---SLGLRALARNDFSQALALRPDM--ADAYNYLGIYLTQAG  112 (296)
T ss_pred             chHHHHHHHHHHHHHcc-ccCCcHhhHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHCC
Confidence            45778889999999976 66543445788999999999   9999999999999999999987  678999999999999


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHH
Q 036703          180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY  259 (365)
Q Consensus       180 ~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  259 (365)
                      +.+        .|...|+++++.+|++..+|..+|.++...|++++|...|+++++.+|+++.       ..+|..++  
T Consensus       113 ~~~--------~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~-------~~~~~~l~--  175 (296)
T PRK11189        113 NFD--------AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY-------RALWLYLA--  175 (296)
T ss_pred             CHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHH--
Confidence            866        6999999999999999999999999999999999999999999999999852       12333222  


Q ss_pred             HhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHH-------hhCcchHHHHHHHH
Q 036703          260 KEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYL-------EWSPENCYAWSKYT  332 (365)
Q Consensus       260 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~~~~  332 (365)
                        ...+++++|+..|++++...+      |+  .|. ++......|+...+ ..++.+.       +..|+..++|..+|
T Consensus       176 --~~~~~~~~A~~~l~~~~~~~~------~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg  243 (296)
T PRK11189        176 --ESKLDPKQAKENLKQRYEKLD------KE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLA  243 (296)
T ss_pred             --HccCCHHHHHHHHHHHHhhCC------cc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence              256789999999988765431      11  121 34444556776554 3444443       55677788999999


Q ss_pred             HHHhhccchhHHHHHHHHHhcCcCCCCCcc
Q 036703          333 ELEKSLDETERARAIFELAIAQPILDLPEF  362 (365)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~  362 (365)
                      .++...|++++|+..|+++++.+|.|.++.
T Consensus       244 ~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~  273 (296)
T PRK11189        244 KYYLSLGDLDEAAALFKLALANNVYNFVEH  273 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence            999999999999999999999998666553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=5.3e-18  Score=140.44  Aligned_cols=342  Identities=14%  Similarity=0.068  Sum_probs=238.7

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      +|+.|+.+|..++.++|.+..++.....++.+.|++++|.+--.+.++++|+ +..|...|....-.|++++|+..|.+.
T Consensus        17 d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~G   96 (539)
T KOG0548|consen   17 DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEG   96 (539)
T ss_pred             cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhc---------------------chHHHHHHHHHHHhhh--hcCC---------------
Q 036703           80 VQCHPYNLSAWINFADFEMKMG---------------------EVDRARNVYECAVEIF--LADD---------------  121 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~---------------------~~~~A~~~~~~a~~~~--~~~~---------------  121 (365)
                      ++.+|++..+...+++.+....                     +.-.....|...++..  .|.+               
T Consensus        97 L~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~  176 (539)
T KOG0548|consen   97 LEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADG  176 (539)
T ss_pred             hhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHH
Confidence            9999999999998888773220                     0001111222222210  1111               


Q ss_pred             -------------------------------------hh------hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703          122 -------------------------------------HD------EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus       122 -------------------------------------~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                                                           ..      ....-...+|....   ...+++.|+..|..++.+
T Consensus       177 ~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay---kkk~f~~a~q~y~~a~el  253 (539)
T KOG0548|consen  177 QLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY---KKKDFETAIQHYAKALEL  253 (539)
T ss_pred             HHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH---HhhhHHHHHHHHHHHHhH
Confidence                                                 00      01233567788777   889999999999999998


Q ss_pred             CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703          159 IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP  238 (365)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  238 (365)
                      . ..  ...+...+..+...|......... +.|++.-.......-.-......+|..+...++++.|+..|++++...-
T Consensus       254 ~-~~--it~~~n~aA~~~e~~~~~~c~~~c-~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R  329 (539)
T KOG0548|consen  254 A-TD--ITYLNNIAAVYLERGKYAECIELC-EKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR  329 (539)
T ss_pred             h-hh--hHHHHHHHHHHHhccHHHHhhcch-HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc
Confidence            7 33  344444444444444332211000 0111111111000000112333366677777888888888888877643


Q ss_pred             C--chhh--------hHHHHhH-------HHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHH
Q 036703          239 P--AEEK--------RYWQRYI-------YLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEM  300 (365)
Q Consensus       239 ~--~~~~--------~~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~  300 (365)
                      .  ....        +......       .--..-|.-. +..|++..|+..|.++++..       |+ +..|.+.+-+
T Consensus       330 t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~-Fk~gdy~~Av~~YteAIkr~-------P~Da~lYsNRAac  401 (539)
T KOG0548|consen  330 TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEA-FKKGDYPEAVKHYTEAIKRD-------PEDARLYSNRAAC  401 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHH-HhccCHHHHHHHHHHHHhcC-------CchhHHHHHHHHH
Confidence            3  1100        0000000       0011112222 47789999999999999988       44 7778899999


Q ss_pred             HHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCC
Q 036703          301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL  357 (365)
Q Consensus       301 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  357 (365)
                      +.++|.+..|.+-.+.+++++|+....|..-+.++....++++|.+.|+++++.+|.
T Consensus       402 ~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~  458 (539)
T KOG0548|consen  402 YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS  458 (539)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            999999999999999999999999999999999999999999999999999999884

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=2.2e-19  Score=149.72  Aligned_cols=261  Identities=13%  Similarity=0.137  Sum_probs=213.2

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703           57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE  136 (365)
Q Consensus        57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  136 (365)
                      +.-|.-+.+.|++.+|.-.|+.+++.+|.+.++|..+|......++-..|+..+.++++. .|++    ..+...+|..|
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-dP~N----leaLmaLAVSy  363 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL-DPTN----LEALMALAVSY  363 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-CCcc----HHHHHHHHHHH
Confidence            355777788999999999999999999999999999999999999999999999999999 9998    99999999999


Q ss_pred             HhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchh-hhHHHHHHHHHHHHHHHHcCC--CCHHHHHHH
Q 036703          137 EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG-IEDAIAGKMRLQYEDGVRKNP--MNYDTWFDY  213 (365)
Q Consensus       137 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~l~~~p--~~~~~~~~~  213 (365)
                      .   ..|.-.+|++.+.+-|...|..    .|.....-....+.... ..........+.|-.+-...|  .++++...+
T Consensus       364 t---Neg~q~~Al~~L~~Wi~~~p~y----~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L  436 (579)
T KOG1125|consen  364 T---NEGLQNQALKMLDKWIRNKPKY----VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGL  436 (579)
T ss_pred             h---hhhhHHHHHHHHHHHHHhCccc----hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence            9   9999999999999999877753    22222111111110000 111123345567777777788  789999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHH
Q 036703          214 IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRI  293 (365)
Q Consensus       214 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~  293 (365)
                      |.+|.-.|++++|+++|+.|+...|.+..         +|..+|..+ ....+..+|+..|.+|+++.|.+      ..+
T Consensus       437 GVLy~ls~efdraiDcf~~AL~v~Pnd~~---------lWNRLGAtL-AN~~~s~EAIsAY~rALqLqP~y------VR~  500 (579)
T KOG1125|consen  437 GVLYNLSGEFDRAVDCFEAALQVKPNDYL---------LWNRLGATL-ANGNRSEEAISAYNRALQLQPGY------VRV  500 (579)
T ss_pred             HHHHhcchHHHHHHHHHHHHHhcCCchHH---------HHHHhhHHh-cCCcccHHHHHHHHHHHhcCCCe------eee
Confidence            99999999999999999999999999853         999999987 47778999999999999999544      445


Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHhhCcc----------hHHHHHHHHHHHhhccchhHHH
Q 036703          294 FKKYIEMELCLGNIDPCRKLYEKYLEWSPE----------NCYAWSKYTELEKSLDETERAR  345 (365)
Q Consensus       294 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~g~~~~A~  345 (365)
                      ++++|..++..|.|.+|.++|-.||.+.+.          +..+|..+-.++...++.+.+.
T Consensus       501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence            699999999999999999999999988654          2358888877777777766443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.85  E-value=1.7e-18  Score=138.86  Aligned_cols=204  Identities=15%  Similarity=0.161  Sum_probs=182.4

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703           19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE   97 (365)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~   97 (365)
                      ....+..+|..+...|++++|+..++++++.+|+ ...+..++.++...|++++|...++++++..|.+...+..++.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            3678999999999999999999999999999998 788999999999999999999999999999999999999999999


Q ss_pred             HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 036703           98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ  177 (365)
Q Consensus        98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  177 (365)
                      ...|++++|++.+++++.. .+.  +.....+..++.++.   ..|++++|...|+++++..|..  ...+..++.++..
T Consensus       110 ~~~g~~~~A~~~~~~~~~~-~~~--~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~  181 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIED-PLY--PQPARSLENAGLCAL---KAGDFDKAEKYLTRALQIDPQR--PESLLELAELYYL  181 (234)
T ss_pred             HHcccHHHHHHHHHHHHhc-ccc--ccchHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCcCC--hHHHHHHHHHHHH
Confidence            9999999999999999986 421  122678888999999   9999999999999999998876  5677788888888


Q ss_pred             cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703          178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP  238 (365)
Q Consensus       178 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  238 (365)
                      .|+.+        +|...+++++...|.++..+...+.++...|+.++|..+.+.+....|
T Consensus       182 ~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       182 RGQYK--------DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             cCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            88865        699999999999898989998999999999999999998887766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.85  E-value=3.9e-17  Score=127.06  Aligned_cols=292  Identities=13%  Similarity=0.092  Sum_probs=229.7

Q ss_pred             HHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-----hHHHHHHHHHHHhhcch
Q 036703           30 EENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN-----LSAWINFADFEMKMGEV  103 (365)
Q Consensus        30 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~~~~~~~~~~~~  103 (365)
                      +.-..+.++|+..|..+++.+|+ .++-+.+|+++.+.|+.++|+.+.+..+.. |+-     ..+...+|.-|+..|-+
T Consensus        45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhh
Confidence            33456789999999999999999 789999999999999999999998776653 432     35678889999999999


Q ss_pred             HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchh
Q 036703          104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG  183 (365)
Q Consensus       104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  183 (365)
                      ++|.++|...++. .    .....+.-.+..+|.   ...++++|+++-++..+..+......+-.-|.++....--.+ 
T Consensus       124 DRAE~~f~~L~de-~----efa~~AlqqLl~IYQ---~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~-  194 (389)
T COG2956         124 DRAEDIFNQLVDE-G----EFAEGALQQLLNIYQ---ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS-  194 (389)
T ss_pred             hHHHHHHHHHhcc-h----hhhHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh-
Confidence            9999999999886 2    223778888999999   999999999999999988877654444444444333221111 


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703          184 IEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD  263 (365)
Q Consensus       184 ~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  263 (365)
                          ..++|+..+.++++.+|+++.+-..+|+++...|++..|++.++.+++.+|.-..        .+.-.+..+| ..
T Consensus       195 ----~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~--------evl~~L~~~Y-~~  261 (389)
T COG2956         195 ----DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS--------EVLEMLYECY-AQ  261 (389)
T ss_pred             ----hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH--------HHHHHHHHHH-HH
Confidence                1457999999999999999999999999999999999999999999999998532        3555566676 48


Q ss_pred             cCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhcc---c
Q 036703          264 AGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD---E  340 (365)
Q Consensus       264 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---~  340 (365)
                      .|+.++.+..+.++.+..       +.+++-..++++.....-.+.|...+.+-+...| +......+.......+   .
T Consensus       262 lg~~~~~~~fL~~~~~~~-------~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~  333 (389)
T COG2956         262 LGKPAEGLNFLRRAMETN-------TGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGR  333 (389)
T ss_pred             hCCHHHHHHHHHHHHHcc-------CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccc
Confidence            999999999999999987       5566667777777777888999999999999999 5555566666655433   3


Q ss_pred             hhHHHHHHHHHh
Q 036703          341 TERARAIFELAI  352 (365)
Q Consensus       341 ~~~A~~~~~~a~  352 (365)
                      ..+...++.+++
T Consensus       334 ~k~sL~~lr~mv  345 (389)
T COG2956         334 AKESLDLLRDMV  345 (389)
T ss_pred             hhhhHHHHHHHH
Confidence            344444444444

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.84  E-value=1.4e-18  Score=128.89  Aligned_cols=190  Identities=15%  Similarity=0.145  Sum_probs=167.3

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++..|+.-++++|+.+|++..+|..++.+|.+.|+.+.|.+.|++|++++|+ .++...+|-+++.+|.+++|...|+++
T Consensus        50 d~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~A  129 (250)
T COG3063          50 DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERA  129 (250)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703           80 VQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus        80 l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      +..  .|.....|.++|.|..+.|+++.|.+.|+++++. .|+.    +.....++..+.   ..|++-.|+..+++...
T Consensus       130 l~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~-dp~~----~~~~l~~a~~~~---~~~~y~~Ar~~~~~~~~  201 (250)
T COG3063         130 LADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL-DPQF----PPALLELARLHY---KAGDYAPARLYLERYQQ  201 (250)
T ss_pred             HhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh-CcCC----ChHHHHHHHHHH---hcccchHHHHHHHHHHh
Confidence            983  5667889999999999999999999999999999 9988    999999999999   99999999999999888


Q ss_pred             cCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHH-HcCCCCHHH
Q 036703          158 RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGV-RKNPMNYDT  209 (365)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l-~~~p~~~~~  209 (365)
                      ..+..  ......-+.+....|+.+         +..-|+.-| ..+|.+.+.
T Consensus       202 ~~~~~--A~sL~L~iriak~~gd~~---------~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         202 RGGAQ--AESLLLGIRIAKRLGDRA---------AAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             ccccc--HHHHHHHHHHHHHhccHH---------HHHHHHHHHHHhCCCcHHH
Confidence            76643  455555677888888865         334454444 578887553

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.84  E-value=3.5e-17  Score=138.36  Aligned_cols=342  Identities=12%  Similarity=0.047  Sum_probs=231.6

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      +|....+..+.+++.+|..++..-..|-.+...|+.++|-.....++..++. ...|..+|-++....+|++|+..|+.|
T Consensus        22 QYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nA  101 (700)
T KOG1156|consen   22 QYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNA  101 (700)
T ss_pred             HHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            3566777888899999999999999999999999999999999999998888 689999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  159 (365)
                      +...|+|..+|..++.+..+.++++.....-.+.++. .|..    ...|+.++..+.   -.|++..|..+.+...+..
T Consensus       102 l~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~----ra~w~~~Avs~~---L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  102 LKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQ----RASWIGFAVAQH---LLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhh----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999 8877    999999999999   9999999999988877654


Q ss_pred             ---CCch---hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703          160 ---PKGR---AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERA  233 (365)
Q Consensus       160 ---p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  233 (365)
                         |+..   ......--.......|...        .|.+.+..--...-+....-...+.++...+++++|..+|...
T Consensus       174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q--------~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L  245 (700)
T KOG1156|consen  174 NTSPSKEDYEHSELLLYQNQILIEAGSLQ--------KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL  245 (700)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHcccHH--------HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence               3321   1111111122222333322        1111111111111112223344455566666666666666666


Q ss_pred             HhcCCCchhhh------HH--HH---------------------hHHHHHHHH----------HHH--hhccCC---hhH
Q 036703          234 IANVPPAEEKR------YW--QR---------------------YIYLWINYA----------LYK--EVDAGD---LER  269 (365)
Q Consensus       234 ~~~~p~~~~~~------~~--~~---------------------~~~~~~~~~----------~~~--~~~~~~---~~~  269 (365)
                      +..+|++..-.      +|  ..                     ...+-+...          .++  .++.|-   +..
T Consensus       246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d  325 (700)
T KOG1156|consen  246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD  325 (700)
T ss_pred             HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence            66666653210      00  00                     000000000          000  000000   000


Q ss_pred             HHH---------HHHHHHhc-----cc-------cCCCc-chhHHHHHH--HHHHHHHhCCCccHHHHHHHHHhhCcchH
Q 036703          270 TRD---------VYRTLFIF-----YF-------SFSPR-MEERRIFKK--YIEMELCLGNIDPCRKLYEKYLEWSPENC  325 (365)
Q Consensus       270 a~~---------~~~~a~~~-----~~-------~~~~~-~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~~p~~~  325 (365)
                      -+.         +.++.+..     .+       +.+.. -|.+-+|..  ++.-+-..|+++.|..+.+.|+...|+-+
T Consensus       326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTli  405 (700)
T KOG1156|consen  326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLI  405 (700)
T ss_pred             hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHH
Confidence            001         11111100     00       00000 033445554  45556689999999999999999999999


Q ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703          326 YAWSKYTELEKSLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       326 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                      +.+..-+.+....|++++|...++++.+++..|
T Consensus       406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD~aD  438 (700)
T KOG1156|consen  406 ELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD  438 (700)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhccchh
Confidence            999999999999999999999999999887543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.84  E-value=6e-17  Score=126.03  Aligned_cols=270  Identities=17%  Similarity=0.133  Sum_probs=225.6

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHHhccHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLRYNEVQRARH   74 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~   74 (365)
                      +.++|..+|-.+++.+|...++...+|.++.+.|..+.|+.+-+..++ .|+      ..+...++.-|...|=+++|..
T Consensus        50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~  128 (389)
T COG2956          50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAED  128 (389)
T ss_pred             CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            458899999999999999999999999999999999999998776654 565      3467889999999999999999


Q ss_pred             HHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC-hhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 036703           75 IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD-HDEAEQLFVAFAKFEEMGCNCKETDRARCIYK  153 (365)
Q Consensus        75 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  153 (365)
                      +|....+...--..+...+..+|....++++|+++-++..+. .|.. ...-...+..++..+.   ...+.+.|+..++
T Consensus       129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~---~~~~~d~A~~~l~  204 (389)
T COG2956         129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQAL---ASSDVDRARELLK  204 (389)
T ss_pred             HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHh---hhhhHHHHHHHHH
Confidence            999998866656788999999999999999999999999998 6654 2344667788888888   8899999999999


Q ss_pred             HHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHH
Q 036703          154 FALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY-DTWFDYIRLEERVGNQERVREVYER  232 (365)
Q Consensus       154 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~  232 (365)
                      ++++.+|..  +..-..++.++...|++.        +|++.++++++.+|... .+.-.+..+|...|+.++....+.+
T Consensus       205 kAlqa~~~c--vRAsi~lG~v~~~~g~y~--------~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~  274 (389)
T COG2956         205 KALQADKKC--VRASIILGRVELAKGDYQ--------KAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR  274 (389)
T ss_pred             HHHhhCccc--eehhhhhhHHHHhccchH--------HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            999999986  556677788888999866        79999999999999875 5777888899999999999999999


Q ss_pred             HHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH
Q 036703          233 AIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC  303 (365)
Q Consensus       233 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (365)
                      +++..+...          +-+..+...+ ...-.+.|...+.+-+..+       |+...+..+.+....
T Consensus       275 ~~~~~~g~~----------~~l~l~~lie-~~~G~~~Aq~~l~~Ql~r~-------Pt~~gf~rl~~~~l~  327 (389)
T COG2956         275 AMETNTGAD----------AELMLADLIE-LQEGIDAAQAYLTRQLRRK-------PTMRGFHRLMDYHLA  327 (389)
T ss_pred             HHHccCCcc----------HHHHHHHHHH-HhhChHHHHHHHHHHHhhC-------CcHHHHHHHHHhhhc
Confidence            999988753          3344455543 5566788888888888777       776666677666553

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.83  E-value=8.6e-18  Score=134.83  Aligned_cols=202  Identities=12%  Similarity=0.138  Sum_probs=177.0

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF  132 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  132 (365)
                      ...+..++..+...|++++|...+++++..+|++...+..++.++...|++++|++.++++++. .|.+    ...+..+
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~----~~~~~~~  105 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-NPNN----GDVLNNY  105 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC----HHHHHHH
Confidence            5788899999999999999999999999999999999999999999999999999999999999 8887    8899999


Q ss_pred             HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 036703          133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFD  212 (365)
Q Consensus       133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~  212 (365)
                      +.++.   ..|++++|...|++++...+.......+..++..+...|+.+        .|...+++++..+|++..++..
T Consensus       106 ~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~  174 (234)
T TIGR02521       106 GTFLC---QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD--------KAEKYLTRALQIDPQRPESLLE  174 (234)
T ss_pred             HHHHH---HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCcCChHHHHH
Confidence            99999   999999999999999985433223557777888888888865        6999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703          213 YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF  280 (365)
Q Consensus       213 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  280 (365)
                      ++.++...|++++|...+++++...|.++.         .+...+.++ ...|+.++|+...+.+...
T Consensus       175 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       175 LAELYYLRGQYKDARAYLERYQQTYNQTAE---------SLWLGIRIA-RALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHH-HHHhhHHHHHHHHHHHHhh
Confidence            999999999999999999999998776543         444555665 5789999999888777654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=5.9e-18  Score=137.66  Aligned_cols=284  Identities=13%  Similarity=0.089  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRY--NEVQRARHIFERLVQCHPYNLSAWINFADF   96 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~   96 (365)
                      ++-+.-+--++++|+++.|+++++-.-+.+..  ..+-..+..++..+  .++..|.++-..++..+..++.+...-|.+
T Consensus       420 dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~  499 (840)
T KOG2003|consen  420 DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNI  499 (840)
T ss_pred             hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCce
Confidence            33445566778899999999998766555444  33444455444443  478899999999999999999999999999


Q ss_pred             HHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 036703           97 EMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK  176 (365)
Q Consensus        97 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  176 (365)
                      ....|++++|.+.|++++.. ...-    ..++++.|..+.   .+|+.++|++.|-+...+.-++  +.+....+.++.
T Consensus       500 ~f~ngd~dka~~~ykeal~n-dasc----~ealfniglt~e---~~~~ldeald~f~klh~il~nn--~evl~qianiye  569 (840)
T KOG2003|consen  500 AFANGDLDKAAEFYKEALNN-DASC----TEALFNIGLTAE---ALGNLDEALDCFLKLHAILLNN--AEVLVQIANIYE  569 (840)
T ss_pred             eeecCcHHHHHHHHHHHHcC-chHH----HHHHHHhcccHH---HhcCHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHH
Confidence            99999999999999999988 5443    889999999999   9999999999999877665554  677888888887


Q ss_pred             HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHH
Q 036703          177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINY  256 (365)
Q Consensus       177 ~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  256 (365)
                      ...++.        +|++++-++...-|+++.++..++++|-+.|+-..|..++-..-...|.+-+         ..--+
T Consensus       570 ~led~a--------qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie---------~iewl  632 (840)
T KOG2003|consen  570 LLEDPA--------QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIE---------TIEWL  632 (840)
T ss_pred             HhhCHH--------HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchH---------HHHHH
Confidence            777765        6999999999999999999999999999999999999999999999999854         33334


Q ss_pred             HHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHH-HHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHH
Q 036703          257 ALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFK-KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELE  335 (365)
Q Consensus       257 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  335 (365)
                      +.+| ....-.++++.+|+++.-..       |...-|. ..+.+..+.|++.+|...|+......|.+.+....+.++.
T Consensus       633 ~ayy-idtqf~ekai~y~ekaaliq-------p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~  704 (840)
T KOG2003|consen  633 AAYY-IDTQFSEKAINYFEKAALIQ-------PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIA  704 (840)
T ss_pred             HHHH-HhhHHHHHHHHHHHHHHhcC-------ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHh
Confidence            5555 57778899999999998887       6644444 4566777999999999999999999999999888888877


Q ss_pred             hhcc
Q 036703          336 KSLD  339 (365)
Q Consensus       336 ~~~g  339 (365)
                      -.+|
T Consensus       705 ~dlg  708 (840)
T KOG2003|consen  705 GDLG  708 (840)
T ss_pred             cccc
Confidence            6666

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=1.2e-18  Score=141.65  Aligned_cols=333  Identities=14%  Similarity=0.088  Sum_probs=223.5

Q ss_pred             hhHHHHHHHHHH--hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHHhccHHHHHH
Q 036703            3 DHGRNAWDRVVT--LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLRYNEVQRARH   74 (365)
Q Consensus         3 ~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~   74 (365)
                      .+|...|+-.++  .+|+...+-..+|.++++..++.+|+++|.-++...|+      ..+....+-...+.|.++.|+.
T Consensus       218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dain  297 (840)
T KOG2003|consen  218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAIN  297 (840)
T ss_pred             HHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHh
Confidence            345555655553  25666666666777777777777777777777777666      2233444445556677777777


Q ss_pred             HHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhh-hcCC--------hhhH--------------------
Q 036703           75 IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF-LADD--------HDEA--------------------  125 (365)
Q Consensus        75 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~--------~~~~--------------------  125 (365)
                      .|..+++..| +..+-+.+..++...|+-++..+.|.+++..+ .+++        +++.                    
T Consensus       298 sfdh~m~~~p-n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~k  376 (840)
T KOG2003|consen  298 SFDHCMEEAP-NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENK  376 (840)
T ss_pred             hHHHHHHhCc-cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhh
Confidence            7777777777 55555666666666777777777777776652 0110        0000                    


Q ss_pred             ------------------------------------------HHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          126 ------------------------------------------EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       126 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                                                                ..+-+..+.-+.   ++|+++.|+++++-.-+.+....
T Consensus       377 a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~l---k~~d~~~aieilkv~~~kdnk~~  453 (840)
T KOG2003|consen  377 ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELL---KNGDIEGAIEILKVFEKKDNKTA  453 (840)
T ss_pred             hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHH---hccCHHHHHHHHHHHHhccchhh
Confidence                                                      000112222333   78999999988875544332211


Q ss_pred             hHHHHHHHHHHHHHcCC--chhhh--------------------------HHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 036703          164 AEDLYRKFLAFEKQYGD--REGIE--------------------------DAIAGKMRLQYEDGVRKNPMNYDTWFDYIR  215 (365)
Q Consensus       164 ~~~~~~~~~~~~~~~~~--~~~~~--------------------------~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~  215 (365)
                      +. .-..+..+....|.  +...+                          .-.+++|...|..+|..+....++++.+|.
T Consensus       454 sa-aa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl  532 (840)
T KOG2003|consen  454 SA-AANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL  532 (840)
T ss_pred             HH-HhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc
Confidence            11 11111111111111  00000                          002367888888888888888888888888


Q ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHH
Q 036703          216 LEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIF  294 (365)
Q Consensus       216 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~  294 (365)
                      .+...|+.++|..+|-+.-.+.-++.         .++...+..|| ...+..+|++++.++..+-       |. |.+.
T Consensus       533 t~e~~~~ldeald~f~klh~il~nn~---------evl~qianiye-~led~aqaie~~~q~~sli-------p~dp~il  595 (840)
T KOG2003|consen  533 TAEALGNLDEALDCFLKLHAILLNNA---------EVLVQIANIYE-LLEDPAQAIELLMQANSLI-------PNDPAIL  595 (840)
T ss_pred             cHHHhcCHHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHH-HhhCHHHHHHHHHHhcccC-------CCCHHHH
Confidence            88888999999998888776655553         37777888886 7888999999999888876       44 7888


Q ss_pred             HHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCC
Q 036703          295 KKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL  357 (365)
Q Consensus       295 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  357 (365)
                      ..++++|-+.|+-.+|..++-......|.|.++...++..|....=.++|+..|+++--..|.
T Consensus       596 skl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~  658 (840)
T KOG2003|consen  596 SKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN  658 (840)
T ss_pred             HHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence            899999999999999999988888889999998888888888888889999999998777774

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=4.9e-18  Score=141.83  Aligned_cols=260  Identities=14%  Similarity=0.107  Sum_probs=211.7

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc
Q 036703           24 NNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE  102 (365)
Q Consensus        24 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  102 (365)
                      +.-|..+++.|++.+|.-.|+.+++.+|. .++|..+|......++-..|+..++++++++|++..+.+.+|-.|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            45688889999999999999999999999 79999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHH---------HHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 036703          103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAK---------FEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA  173 (365)
Q Consensus       103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  173 (365)
                      -..|.+.+.+-+.. .|..      .|...+.         -..   ....+....+.|-.+-...|.....++...++.
T Consensus       369 q~~Al~~L~~Wi~~-~p~y------~~l~~a~~~~~~~~~~s~~---~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV  438 (579)
T KOG1125|consen  369 QNQALKMLDKWIRN-KPKY------VHLVSAGENEDFENTKSFL---DSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV  438 (579)
T ss_pred             HHHHHHHHHHHHHh-Cccc------hhccccCccccccCCcCCC---CHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence            99999999999888 6543      2221110         001   222344566677777777776556889999999


Q ss_pred             HHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHH
Q 036703          174 FEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLW  253 (365)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~  253 (365)
                      ++.-.|+++        +|+.+|+.+|+..|++..+|..+|-.+....+..+|+..|.+|++.-|.-         +.++
T Consensus       439 Ly~ls~efd--------raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y---------VR~R  501 (579)
T KOG1125|consen  439 LYNLSGEFD--------RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY---------VRVR  501 (579)
T ss_pred             HHhcchHHH--------HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe---------eeee
Confidence            988888866        79999999999999999999999999999999999999999999999985         6688


Q ss_pred             HHHHHHHhhccCChhHHHHHHHHHHhccccCCC---c-chhHHHHHHHHHHHHHhCCCccHH
Q 036703          254 INYALYKEVDAGDLERTRDVYRTLFIFYFSFSP---R-MEERRIFKKYIEMELCLGNIDPCR  311 (365)
Q Consensus       254 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~A~  311 (365)
                      +++|..+ +..|.|++|.+.|-.++........   . .+...+|..+=.+...+++.+-+.
T Consensus       502 yNlgIS~-mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~  562 (579)
T KOG1125|consen  502 YNLGISC-MNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ  562 (579)
T ss_pred             hhhhhhh-hhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence            8888887 7999999999999999988543111   0 022456766665555566655443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.81  E-value=2.5e-17  Score=149.84  Aligned_cols=253  Identities=22%  Similarity=0.384  Sum_probs=215.3

Q ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHH
Q 036703           71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARC  150 (365)
Q Consensus        71 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  150 (365)
                      +..+-|++.+..+|++...|+.|..+..+.++.++|+++.++|+...++....+...+|..+.+++.   .-|.-+...+
T Consensus      1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn---~yG~eesl~k 1518 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN---AYGTEESLKK 1518 (1710)
T ss_pred             cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH---hhCcHHHHHH
Confidence            3456788999999999999999999999999999999999999988344433556789999999999   8898899999


Q ss_pred             HHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 036703          151 IYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVY  230 (365)
Q Consensus       151 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~  230 (365)
                      +|++|.+.+..   ..++..+..++...+..+        .|.++|+.+++.+.+...+|..+++++..+.+-+.|+.++
T Consensus      1519 VFeRAcqycd~---~~V~~~L~~iy~k~ek~~--------~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1519 VFERACQYCDA---YTVHLKLLGIYEKSEKND--------EADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred             HHHHHHHhcch---HHHHHHHHHHHHHhhcch--------hHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHH
Confidence            99999997754   468888888888777655        6899999999998888899999999999999999999999


Q ss_pred             HHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCcc
Q 036703          231 ERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDP  309 (365)
Q Consensus       231 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  309 (365)
                      .+|++..|....       +.+.-..|+++ +..|+.++++.+|+..+..+       |. .++|..|++..++.|+.+.
T Consensus      1588 ~rAL~~lPk~eH-------v~~IskfAqLE-Fk~GDaeRGRtlfEgll~ay-------PKRtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1588 KRALKSLPKQEH-------VEFISKFAQLE-FKYGDAERGRTLFEGLLSAY-------PKRTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred             HHHHhhcchhhh-------HHHHHHHHHHH-hhcCCchhhHHHHHHHHhhC-------ccchhHHHHHHHHHHccCCHHH
Confidence            999999999543       56777888885 79999999999999999988       66 8899999999999999999


Q ss_pred             HHHHHHHHHhh--CcchHH-HHHHHHHHHhhccchhHHHHHHHHHh
Q 036703          310 CRKLYEKYLEW--SPENCY-AWSKYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       310 A~~~~~~al~~--~p~~~~-~~~~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                      ++.+|+|++.+  .|.... ++..+..++..+|+...+..+=.+|.
T Consensus      1653 vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1653 VRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred             HHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence            99999999987  344444 56677788888998776666655554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.81  E-value=4.6e-17  Score=140.29  Aligned_cols=291  Identities=11%  Similarity=0.065  Sum_probs=234.9

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      .++.+.++++++.+|+|+.+.+.++--+.-+++++.|.....+++++++.  ...|..++-+....+++..|+.+...++
T Consensus       461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al  540 (799)
T KOG4162|consen  461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL  540 (799)
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999776  7899999999999999999999999999


Q ss_pred             HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH---------HHHHHHHhccccchhHHHHHH
Q 036703           81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV---------AFAKFEEMGCNCKETDRARCI  151 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~A~~~  151 (365)
                      .-.|+|......-+.+....++.++|.......+.. ....    ..+-.         ..+.+..   ..++..+|.+.
T Consensus       541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~-we~~----~~~q~~~~~g~~~~lk~~l~l---a~~q~~~a~s~  612 (799)
T KOG4162|consen  541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL-WEAE----YGVQQTLDEGKLLRLKAGLHL---ALSQPTDAIST  612 (799)
T ss_pred             HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH-HHhh----hhHhhhhhhhhhhhhhccccc---Ccccccccchh
Confidence            999998888887788888889999998888777766 3321    11111         1111222   23344444444


Q ss_pred             HHHHhcc-------------CC------Cc-----hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH
Q 036703          152 YKFALDR-------------IP------KG-----RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY  207 (365)
Q Consensus       152 ~~~~l~~-------------~p------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~  207 (365)
                      .+++...             .|      ..     ....+|...+......+..+        .+..++.++-..+|..+
T Consensus       613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~--------~a~~CL~Ea~~~~~l~~  684 (799)
T KOG4162|consen  613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDD--------EARSCLLEASKIDPLSA  684 (799)
T ss_pred             hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCch--------HHHHHHHHHHhcchhhH
Confidence            4333221             11      11     13457777777777777765        58888999999999999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHH--HHHHHHhccccCC
Q 036703          208 DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRD--VYRTLFIFYFSFS  285 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~a~~~~~~~~  285 (365)
                      ..|+..|.++...|...+|...|..++..+|+++.         ....+|.++ ...|+..-|..  ++..+++.+    
T Consensus       685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~---------s~~Ala~~l-le~G~~~la~~~~~L~dalr~d----  750 (799)
T KOG4162|consen  685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP---------SMTALAELL-LELGSPRLAEKRSLLSDALRLD----  750 (799)
T ss_pred             HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH---------HHHHHHHHH-HHhCCcchHHHHHHHHHHHhhC----
Confidence            99999999999999999999999999999999854         677788887 57887776666  999999998    


Q ss_pred             Ccchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHH
Q 036703          286 PRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCY  326 (365)
Q Consensus       286 ~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  326 (365)
                         |. ++.|..+|.+..+.|+.++|.++|.-++++.+.+|.
T Consensus       751 ---p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  751 ---PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             ---CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence               55 889999999999999999999999999999887653

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.79  E-value=2.9e-15  Score=124.40  Aligned_cols=333  Identities=16%  Similarity=0.292  Sum_probs=211.0

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHh-ccHHHHHHH----H
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRY-NEVQRARHI----F   76 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~A~~~----~   76 (365)
                      +++++..|++.+...|.++.+|..++..+....+++....+|.|++...-+.++|..|...-.+. |+...++..    |
T Consensus        35 ~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy  114 (656)
T KOG1914|consen   35 IDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQAY  114 (656)
T ss_pred             HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999997655567777776554432 232222222    2


Q ss_pred             HHHHH---hCCcchHHHHHHHHHHHh---------hcchHHHHHHHHHHHhhhhcCC-----------------------
Q 036703           77 ERLVQ---CHPYNLSAWINFADFEMK---------MGEVDRARNVYECAVEIFLADD-----------------------  121 (365)
Q Consensus        77 ~~~l~---~~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~~~~~~~-----------------------  121 (365)
                      +=++.   .++.+..+|..++.++..         +.+.+..+++|++|+..+..+-                       
T Consensus       115 ~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i  194 (656)
T KOG1914|consen  115 DFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFI  194 (656)
T ss_pred             HHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222   345556666666665432         1244555666666665411000                       


Q ss_pred             --------------------------------------hhhHHHHHHHHHHHHHhc------------------------
Q 036703          122 --------------------------------------HDEAEQLFVAFAKFEEMG------------------------  139 (365)
Q Consensus       122 --------------------------------------~~~~~~~~~~~~~~~~~~------------------------  139 (365)
                                                            ......+|.+++.++...                        
T Consensus       195 ~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~  274 (656)
T KOG1914|consen  195 GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLY  274 (656)
T ss_pred             HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHH
Confidence                                                  001122343333333200                        


Q ss_pred             ---------------cccch--------------hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHH
Q 036703          140 ---------------CNCKE--------------TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAG  190 (365)
Q Consensus       140 ---------------~~~~~--------------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (365)
                                     ...++              -+++..+|++++...-.. ...++..++.+....-+...     .+
T Consensus       275 l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~~~~~n~-----~~  348 (656)
T KOG1914|consen  275 LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEESRYDDNK-----EK  348 (656)
T ss_pred             HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhcccch-----hh
Confidence                           01122              344455555544422221 12344444443332221110     12


Q ss_pred             HHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhH
Q 036703          191 KMRLQYEDGVRKNPMNY-DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER  269 (365)
Q Consensus       191 ~a~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (365)
                      +....+++.+.....++ -+|..+..+-.+..-...|+.+|.++-+..-...+       +.+...+..++  ..++..-
T Consensus       349 ~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh-------VfVa~A~mEy~--cskD~~~  419 (656)
T KOG1914|consen  349 KVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH-------VFVAAALMEYY--CSKDKET  419 (656)
T ss_pred             hhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch-------hhHHHHHHHHH--hcCChhH
Confidence            34445555555433332 35666666666666777888888888765322211       34444455553  7899999


Q ss_pred             HHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh--Ccc-hHHHHHHHHHHHhhccchhHHH
Q 036703          270 TRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW--SPE-NCYAWSKYTELEKSLDETERAR  345 (365)
Q Consensus       270 a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~-~~~~~~~~~~~~~~~g~~~~A~  345 (365)
                      |..+|+-+++..       ++ +.....+.+++...|+-+.|+.+|++++..  .|+ +..+|..+..++...|+...+.
T Consensus       420 AfrIFeLGLkkf-------~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~  492 (656)
T KOG1914|consen  420 AFRIFELGLKKF-------GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL  492 (656)
T ss_pred             HHHHHHHHHHhc-------CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence            999999999998       55 778889999999999999999999999987  443 5689999999999999999999


Q ss_pred             HHHHHHhcCcC
Q 036703          346 AIFELAIAQPI  356 (365)
Q Consensus       346 ~~~~~a~~~~~  356 (365)
                      ++-++-...-|
T Consensus       493 ~lekR~~~af~  503 (656)
T KOG1914|consen  493 KLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHHHhcc
Confidence            98877766555

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.6e-15  Score=125.94  Aligned_cols=312  Identities=15%  Similarity=0.119  Sum_probs=205.5

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh-------------
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRY-------------   66 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~-------------   66 (365)
                      +|++|.+--.+.++++|+-+..|...|......|++++|+..|.+.|+.+|+ ..+...++..+...             
T Consensus        51 ~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~  130 (539)
T KOG0548|consen   51 SYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFH  130 (539)
T ss_pred             hHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHH
Confidence            3677888888888899999999999999999999999999999999998888 44444454443111             


Q ss_pred             ----ccH----HHHHHHHHHHH---HhCCcc-------------------------------------------------
Q 036703           67 ----NEV----QRARHIFERLV---QCHPYN-------------------------------------------------   86 (365)
Q Consensus        67 ----~~~----~~A~~~~~~~l---~~~p~~-------------------------------------------------   86 (365)
                          ++.    ......|...+   +.+|.+                                                 
T Consensus       131 ~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  210 (539)
T KOG0548|consen  131 EKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPI  210 (539)
T ss_pred             HHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCc
Confidence                000    00000011100   000000                                                 


Q ss_pred             -------------hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHHH----------------------
Q 036703           87 -------------LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQL----------------------  128 (365)
Q Consensus        87 -------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~----------------------  128 (365)
                                   ..-...+|....+..+++.|++.|..+++. . .+   ......+                      
T Consensus       211 ~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el-~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr  288 (539)
T KOG0548|consen  211 IEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL-A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR  288 (539)
T ss_pred             cchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH-h-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH
Confidence                         001233444444555666666666666665 4 22   0000011                      


Q ss_pred             ------------HHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHH
Q 036703          129 ------------FVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQY  196 (365)
Q Consensus       129 ------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  196 (365)
                                  ...+|..+.   ..++++.++..|++++.....   ..+....-.               .+++....
T Consensus       289 e~rad~klIak~~~r~g~a~~---k~~~~~~ai~~~~kaLte~Rt---~~~ls~lk~---------------~Ek~~k~~  347 (539)
T KOG0548|consen  289 ELRADYKLIAKALARLGNAYT---KREDYEGAIKYYQKALTEHRT---PDLLSKLKE---------------AEKALKEA  347 (539)
T ss_pred             HHHHHHHHHHHHHHHhhhhhh---hHHhHHHHHHHHHHHhhhhcC---HHHHHHHHH---------------HHHHHHHH
Confidence                        111223344   556777777777776654332   111111111               22455555


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 036703          197 EDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT  276 (365)
Q Consensus       197 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  276 (365)
                      ++....+|.-..--..-|.-+...|++..|+..|.++++.+|++..         ++.+.+.++ ...|.+..|+.-.+.
T Consensus       348 e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~---------lYsNRAac~-~kL~~~~~aL~Da~~  417 (539)
T KOG0548|consen  348 ERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR---------LYSNRAACY-LKLGEYPEALKDAKK  417 (539)
T ss_pred             HHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH---------HHHHHHHHH-HHHhhHHHHHHHHHH
Confidence            5555566766666666788889999999999999999999999864         788888887 699999999999999


Q ss_pred             HHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703          277 LFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       277 a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                      +++++       |+ ...|..-|.++..+.++++|.+.|+++++.+|++..+...+..+...........++.++++
T Consensus       418 ~ieL~-------p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~~  487 (539)
T KOG0548|consen  418 CIELD-------PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRAM  487 (539)
T ss_pred             HHhcC-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhhc
Confidence            99998       44 66677778888899999999999999999999999998888888886544444555555543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.79  E-value=1.7e-17  Score=146.38  Aligned_cols=321  Identities=11%  Similarity=0.082  Sum_probs=202.4

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      +|++.|++|.+++|.+..+|-..++.+....+.+.|..+.-++-+..|-   ...|...+-.+...++...|+.-|+.++
T Consensus       510 RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL  589 (1238)
T KOG1127|consen  510 RAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL  589 (1238)
T ss_pred             HHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh
Confidence            4555555555555555555555555555555555555554444444444   3456666666666777777888888888


Q ss_pred             HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      ..+|.+...|..+|..|.+.|.+..|.++|.++... .|.+    ...-+..+.+..   ..|.+.+|+..+...+....
T Consensus       590 R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-rP~s----~y~~fk~A~~ec---d~GkYkeald~l~~ii~~~s  661 (1238)
T KOG1127|consen  590 RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-RPLS----KYGRFKEAVMEC---DNGKYKEALDALGLIIYAFS  661 (1238)
T ss_pred             cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-CcHh----HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888 7665    555556666666   77888888888777665432


Q ss_pred             Cc-----hhHHHHHHHHHHHHHcCCc----hhhhHH--------------------HH----------------------
Q 036703          161 KG-----RAEDLYRKFLAFEKQYGDR----EGIEDA--------------------IA----------------------  189 (365)
Q Consensus       161 ~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~--------------------~~----------------------  189 (365)
                      ..     ..+..+.+.+....-.|-.    +-+++.                    +.                      
T Consensus       662 ~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~i  741 (1238)
T KOG1127|consen  662 LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLII  741 (1238)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHH
Confidence            21     1112222211111111100    000000                    00                      


Q ss_pred             -----------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHhcCCCchhhh
Q 036703          190 -----------------GKMRLQYEDGVRKNPMNYDTWFDYIRLEER--------VGNQERVREVYERAIANVPPAEEKR  244 (365)
Q Consensus       190 -----------------~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~  244 (365)
                                       -.+.+.+-..+.. ..+...|.++|..+.+        ..+...|+.++.++++.+.++..  
T Consensus       742 l~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl-~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~--  818 (1238)
T KOG1127|consen  742 LSKQLEKTGALKKNDLLFLGYECGIAHLSL-AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEG--  818 (1238)
T ss_pred             HHHHHHhcccCcchhHHHHHHHHhhHHHHH-hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHH--
Confidence                             0011111111110 0012345666654433        12334677888888887776643  


Q ss_pred             HHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch
Q 036703          245 YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN  324 (365)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  324 (365)
                             +|..++.+  ...|++.-|...|-+.+...|..      ...|.+++.++.+..+++.|...|.++..++|.+
T Consensus       819 -------~WnaLGVl--sg~gnva~aQHCfIks~~sep~~------~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n  883 (1238)
T KOG1127|consen  819 -------LWNALGVL--SGIGNVACAQHCFIKSRFSEPTC------HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN  883 (1238)
T ss_pred             -------HHHHHHHh--hccchhhhhhhhhhhhhhccccc------hhheeccceeEEecccHHHhhHHHHhhhhcCchh
Confidence                   77777766  35677888888888877776322      5566888888888889999999999999999999


Q ss_pred             HHHHHHHHHHHhhccchhHHHHHHHH
Q 036703          325 CYAWSKYTELEKSLDETERARAIFEL  350 (365)
Q Consensus       325 ~~~~~~~~~~~~~~g~~~~A~~~~~~  350 (365)
                      ...|...+.+....|+.-++..+|..
T Consensus       884 l~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  884 LVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            99999999998889988888888877

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.78  E-value=1.6e-16  Score=135.93  Aligned_cols=262  Identities=16%  Similarity=0.141  Sum_probs=199.4

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh--------CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW--------MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQC----   82 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----   82 (365)
                      +|.-..+...++..+...|++++|...|+++++.        .|. ......+|.++...+++.+|..+|++++.+    
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            5666666777999999999999999999999987        566 344456899999999999999999999974    


Q ss_pred             ----CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhc----CChhhHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 036703           83 ----HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA----DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKF  154 (365)
Q Consensus        83 ----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  154 (365)
                          +|.-..++..++.+|.+.|++++|..++++|+++ ..    .+++.....+...+.++.   ..+++++|..++++
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-~~~~~~~~~~~v~~~l~~~~~~~~---~~~~~Eea~~l~q~  350 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-YEKLLGASHPEVAAQLSELAAILQ---SMNEYEEAKKLLQK  350 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-HHHhhccChHHHHHHHHHHHHHHH---HhcchhHHHHHHHH
Confidence                4555678899999999999999999999999987 32    234555677788888888   88999999999887


Q ss_pred             HhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703          155 ALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR-KNPMNYDTWFDYIRLEERVGNQERVREVYERA  233 (365)
Q Consensus       155 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  233 (365)
                      ++++.                                     .++.. .+|.-......+|.++...|++++|.++|+++
T Consensus       351 al~i~-------------------------------------~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a  393 (508)
T KOG1840|consen  351 ALKIY-------------------------------------LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA  393 (508)
T ss_pred             HHHHH-------------------------------------HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            76431                                     11111 12233567888999999999999999999999


Q ss_pred             HhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHH
Q 036703          234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRK  312 (365)
Q Consensus       234 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~  312 (365)
                      +.+.........+.. -..+..++..+ .+.+.+..|..+|..+..+........|+ ...+.+++.+|..+|+++.|.+
T Consensus       394 i~~~~~~~~~~~~~~-~~~l~~la~~~-~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~  471 (508)
T KOG1840|consen  394 IQILRELLGKKDYGV-GKPLNQLAEAY-EELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE  471 (508)
T ss_pred             HHHHHhcccCcChhh-hHHHHHHHHHH-HHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence            987532211111010 11334455555 48899999999999988775433333255 6678899999999999999999


Q ss_pred             HHHHHHhh
Q 036703          313 LYEKYLEW  320 (365)
Q Consensus       313 ~~~~al~~  320 (365)
                      +.++++..
T Consensus       472 ~~~~~~~~  479 (508)
T KOG1840|consen  472 LEEKVLNA  479 (508)
T ss_pred             HHHHHHHH
Confidence            99998843

>PLN02789 farnesyltranstransferase

Probab=99.78  E-value=4.9e-16  Score=127.39  Aligned_cols=205  Identities=11%  Similarity=0.018  Sum_probs=173.1

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccH--HHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG-NVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEV--QRARHIFE   77 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~--~~A~~~~~   77 (365)
                      .++|..++.++++++|++..+|...+.++...| ++++++..++++++.+|+ ..+|...+.+....|+.  +++..++.
T Consensus        53 serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~  132 (320)
T PLN02789         53 SPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTR  132 (320)
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHH
Confidence            578999999999999999999999999999998 679999999999999999 68999998888877763  77899999


Q ss_pred             HHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc---chh----HHHHH
Q 036703           78 RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC---KET----DRARC  150 (365)
Q Consensus        78 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~A~~  150 (365)
                      ++++.+|.+..+|...+-++...|+++++++.++++++. .|.+    ..+|...+.+..   ..   |.+    ++++.
T Consensus       133 kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~~N----~sAW~~R~~vl~---~~~~l~~~~~~~e~el~  204 (320)
T PLN02789        133 KILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DVRN----NSAWNQRYFVIT---RSPLLGGLEAMRDSELK  204 (320)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CCCc----hhHHHHHHHHHH---hccccccccccHHHHHH
Confidence            999999999999999999999999999999999999999 9988    999999988776   54   222    57888


Q ss_pred             HHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 036703          151 IYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV  220 (365)
Q Consensus       151 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~  220 (365)
                      +..++|...|.+.  ..|.-+..++...+..-.    ....+...+.+++..+|+++.+.-.+++++...
T Consensus       205 y~~~aI~~~P~N~--SaW~Yl~~ll~~~~~~l~----~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        205 YTIDAILANPRNE--SPWRYLRGLFKDDKEALV----SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHHHhCCCCc--CHHHHHHHHHhcCCcccc----cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence            8889999999984  566666555554332100    012477888888889999999999999988653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.77  E-value=4e-15  Score=127.12  Aligned_cols=316  Identities=11%  Similarity=-0.029  Sum_probs=220.9

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHH
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI   91 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   91 (365)
                      +|+.+.++..++.++...|+.+.+...+.++.+..|.    .......+......|++++|...+++++..+|++...+.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            7999999999999999999999999999999887775    345566677888999999999999999999999887776


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHH
Q 036703           92 NFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKF  171 (365)
Q Consensus        92 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~  171 (365)
                      . +..+...|....+.....+++....|.. +........++.++.   .+|++++|...++++++..|.+  ...+..+
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~a~~~~---~~G~~~~A~~~~~~al~~~p~~--~~~~~~l  154 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPEN-PDYWYLLGMLAFGLE---EAGQYDRAEEAARRALELNPDD--AWAVHAV  154 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCC-CCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCC--cHHHHHH
Confidence            4 4444444443333333333333202222 333777778889999   9999999999999999999987  5677788


Q ss_pred             HHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHH
Q 036703          172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY----DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQ  247 (365)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  247 (365)
                      +.++...|+.+        +|+..+++++...|.++    ..|..++.++...|++++|...|++++...|......   
T Consensus       155 a~i~~~~g~~~--------eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~---  223 (355)
T cd05804         155 AHVLEMQGRFK--------EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPAL---  223 (355)
T ss_pred             HHHHHHcCCHH--------HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHH---
Confidence            88888888865        69999999999877543    3567899999999999999999999987665321100   


Q ss_pred             HhHHHHHHHHHHHhhccCChhHHHHH---HHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc--
Q 036703          248 RYIYLWINYALYKEVDAGDLERTRDV---YRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP--  322 (365)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--  322 (365)
                      ........+...  ...|....+...   ........+.  ..+  .......+......|+.+.|...++.+....-  
T Consensus       224 ~~~~~~~~l~~~--~~~g~~~~~~~w~~~~~~~~~~~~~--~~~--~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~  297 (355)
T cd05804         224 DLLDAASLLWRL--ELAGHVDVGDRWEDLADYAAWHFPD--HGL--AFNDLHAALALAGAGDKDALDKLLAALKGRASSA  297 (355)
T ss_pred             HHhhHHHHHHHH--HhcCCCChHHHHHHHHHHHHhhcCc--ccc--hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence            000000001111  123333322222   1221111111  111  12223566777788999999999998765321  


Q ss_pred             -------chHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          323 -------ENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       323 -------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                             ..+.+....+..+...|+.++|...+..++...
T Consensus       298 ~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         298 DDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             CchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                   134566777888889999999999999998654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN02789 farnesyltranstransferase

Probab=99.77  E-value=1.5e-15  Score=124.51  Aligned_cols=215  Identities=10%  Similarity=0.061  Sum_probs=177.6

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCcchHHHHHH
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN-EVQRARHIFERLVQCHPYNLSAWINF   93 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~   93 (365)
                      .|+...++..+-.++...+..++|+..+.++++++|+ ..+|...+.++...| ++++++..+.++++.+|++..+|...
T Consensus        33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R  112 (320)
T PLN02789         33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR  112 (320)
T ss_pred             CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence            3455566766777778889999999999999999999 789999999998888 68999999999999999999999999


Q ss_pred             HHHHHhhcch--HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHH
Q 036703           94 ADFEMKMGEV--DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKF  171 (365)
Q Consensus        94 ~~~~~~~~~~--~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~  171 (365)
                      +.+..+.|..  ++++.+++++++. .|.+    ..+|...+.++.   ..|+++++++.+.++|+.+|.+.  ..|...
T Consensus       113 ~~~l~~l~~~~~~~el~~~~kal~~-dpkN----y~AW~~R~w~l~---~l~~~~eeL~~~~~~I~~d~~N~--sAW~~R  182 (320)
T PLN02789        113 RWLAEKLGPDAANKELEFTRKILSL-DAKN----YHAWSHRQWVLR---TLGGWEDELEYCHQLLEEDVRNN--SAWNQR  182 (320)
T ss_pred             HHHHHHcCchhhHHHHHHHHHHHHh-Cccc----HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHCCCch--hHHHHH
Confidence            9998888864  7889999999999 9998    999999999999   99999999999999999999884  566655


Q ss_pred             HHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCch
Q 036703          172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER----VGNQERVREVYERAIANVPPAE  241 (365)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~  241 (365)
                      ..+....+....... ..+..+....+++..+|+|..+|..++-++..    .+...+|...+.+++...|.+.
T Consensus       183 ~~vl~~~~~l~~~~~-~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~  255 (320)
T PLN02789        183 YFVITRSPLLGGLEA-MRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV  255 (320)
T ss_pred             HHHHHhccccccccc-cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence            544444322111110 12356777789999999999999999998876    3455679999999988877764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=1.7e-14  Score=121.24  Aligned_cols=335  Identities=11%  Similarity=0.100  Sum_probs=228.6

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      +|++|.+...+++...|++..+...-.-+..+.+++++|..+.+.-....-.....+.-+.+..+.|..++|...++   
T Consensus        27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~---  103 (652)
T KOG2376|consen   27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK---  103 (652)
T ss_pred             HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh---
Confidence            47899999999999999999999999999999999999985544332222223333677888899999999999998   


Q ss_pred             HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---------------------------hhhHHHHHHHHH
Q 036703           81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---------------------------HDEAEQLFVAFA  133 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------------------~~~~~~~~~~~~  133 (365)
                      ..++.+..+....|+++.+.|++++|.++|+..++. ..++                           ..++....++.+
T Consensus       104 ~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~A  182 (652)
T KOG2376|consen  104 GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTA  182 (652)
T ss_pred             cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHH
Confidence            566767778889999999999999999999999765 3222                           223466778888


Q ss_pred             HHHHhccccchhHHHHHHHHHHhccCC--------C-----chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHH
Q 036703          134 KFEEMGCNCKETDRARCIYKFALDRIP--------K-----GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGV  200 (365)
Q Consensus       134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l  200 (365)
                      ..+.   ..|++.+|++.++++++.+.        .     .....+...++..+...|...        +|..+|...+
T Consensus       183 c~~i---~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~--------ea~~iy~~~i  251 (652)
T KOG2376|consen  183 CILI---ENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA--------EASSIYVDII  251 (652)
T ss_pred             HHHH---hcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH--------HHHHHHHHHH
Confidence            8999   99999999999999944321        1     112234445555666677655        3555555555


Q ss_pred             HcCCCCHHH-----------------------------------------------------------------------
Q 036703          201 RKNPMNYDT-----------------------------------------------------------------------  209 (365)
Q Consensus       201 ~~~p~~~~~-----------------------------------------------------------------------  209 (365)
                      +.+|.+...                                                                       
T Consensus       252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a  331 (652)
T KOG2376|consen  252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA  331 (652)
T ss_pred             HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            544432211                                                                       


Q ss_pred             ---------HHH---HHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 036703          210 ---------WFD---YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL  277 (365)
Q Consensus       210 ---------~~~---~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  277 (365)
                               .+.   ......+...+.+|..++....+..|...        ..+.+..+++. ..+|+++.|++++...
T Consensus       332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s--------~~v~L~~aQl~-is~gn~~~A~~il~~~  402 (652)
T KOG2376|consen  332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS--------KVVLLLRAQLK-ISQGNPEVALEILSLF  402 (652)
T ss_pred             hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh--------HHHHHHHHHHH-HhcCCHHHHHHHHHHH
Confidence                     000   00000111134445555555555555542        22555566665 6899999999999944


Q ss_pred             Hhcc-ccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhC-------cchHHHHHHHHHHHhhccchhHHHHHHH
Q 036703          278 FIFY-FSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS-------PENCYAWSKYTELEKSLDETERARAIFE  349 (365)
Q Consensus       278 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~  349 (365)
                      +..- ..+..+-..|.+...+..++.+.++.+.|..++..++..-       +....+|...+.+..+.|+.++|..+++
T Consensus       403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le  482 (652)
T KOG2376|consen  403 LESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE  482 (652)
T ss_pred             hhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence            4220 0000000226666777778888888888888888887652       2234577788899999999999999999


Q ss_pred             HHhcCcCCCC
Q 036703          350 LAIAQPILDL  359 (365)
Q Consensus       350 ~a~~~~~~~~  359 (365)
                      +.++.+|.|.
T Consensus       483 el~k~n~~d~  492 (652)
T KOG2376|consen  483 ELVKFNPNDT  492 (652)
T ss_pred             HHHHhCCchH
Confidence            9999888553

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.76  E-value=3.1e-15  Score=128.18  Aligned_cols=259  Identities=14%  Similarity=0.172  Sum_probs=199.7

Q ss_pred             CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhh---
Q 036703           50 MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQC--------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF---  117 (365)
Q Consensus        50 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---  117 (365)
                      .|. ..+...++..|...|+++.|...++++++.        +|.-......+|.+|...+++.+|..+|++|+...   
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            444 455666899999999999999999999998        67445555669999999999999999999999872   


Q ss_pred             hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHH
Q 036703          118 LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYE  197 (365)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  197 (365)
                      .+.+++....++.+++..|.   ..|++++|..++++++.+.                                     +
T Consensus       275 ~G~~h~~va~~l~nLa~ly~---~~GKf~EA~~~~e~Al~I~-------------------------------------~  314 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYY---KQGKFAEAEEYCERALEIY-------------------------------------E  314 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHh---ccCChHHHHHHHHHHHHHH-------------------------------------H
Confidence            23446778899999999999   9999999999999887532                                     1


Q ss_pred             HHHH-cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHH
Q 036703          198 DGVR-KNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP---PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDV  273 (365)
Q Consensus       198 ~~l~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  273 (365)
                      +.+. ..|.-...+..++.++...+++++|..+++++++..-   ...+.    ....+..+++..+ ..+|++++|.++
T Consensus       315 ~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~----~~a~~~~nl~~l~-~~~gk~~ea~~~  389 (508)
T KOG1840|consen  315 KLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV----NLAKIYANLAELY-LKMGKYKEAEEL  389 (508)
T ss_pred             HhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch----HHHHHHHHHHHHH-HHhcchhHHHHH
Confidence            1111 1112234566677788889999999999999887632   21110    1134777888888 699999999999


Q ss_pred             HHHHHhccccCCCc-chh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh-------CcchHHHHHHHHHHHhhccchhHH
Q 036703          274 YRTLFIFYFSFSPR-MEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW-------SPENCYAWSKYTELEKSLDETERA  344 (365)
Q Consensus       274 ~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~A  344 (365)
                      |++++........- -+. ......++..+.+.+.+.+|...|.++..+       .|+....+.+++.+|..+|+++.|
T Consensus       390 ~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a  469 (508)
T KOG1840|consen  390 YKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA  469 (508)
T ss_pred             HHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence            99999884221110 022 455677888889999999999999998765       345567889999999999999999


Q ss_pred             HHHHHHHhc
Q 036703          345 RAIFELAIA  353 (365)
Q Consensus       345 ~~~~~~a~~  353 (365)
                      .++-++++.
T Consensus       470 ~~~~~~~~~  478 (508)
T KOG1840|consen  470 EELEEKVLN  478 (508)
T ss_pred             HHHHHHHHH
Confidence            999999873

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.75  E-value=2.4e-16  Score=139.28  Aligned_cols=339  Identities=12%  Similarity=0.112  Sum_probs=236.7

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      ..|...|-++++++|+-..+|..+|.+|....+...|.+.|.+|.+++|. ...|-..++.+.+..+.+.|..+.-++-+
T Consensus       475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q  554 (1238)
T KOG1127|consen  475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ  554 (1238)
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence            46788899999999999999999999999888999999999999999999 78999999999999999999999766666


Q ss_pred             hCCc--chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703           82 CHPY--NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus        82 ~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  159 (365)
                      ..|-  ....|...|-.|...++...|+.-|+.+++. .|.+    ...|..+|..|.   +.|++..|+++|.++....
T Consensus       555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~-dPkD----~n~W~gLGeAY~---~sGry~~AlKvF~kAs~Lr  626 (1238)
T KOG1127|consen  555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT-DPKD----YNLWLGLGEAYP---ESGRYSHALKVFTKASLLR  626 (1238)
T ss_pred             hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC-Cchh----HHHHHHHHHHHH---hcCceehHHHhhhhhHhcC
Confidence            6663  2456778889999999999999999999999 8888    999999999999   9999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHcCCchhhhH---------------------H------------HHHHHHHHHHHHHHcC---
Q 036703          160 PKGRAEDLYRKFLAFEKQYGDREGIED---------------------A------------IAGKMRLQYEDGVRKN---  203 (365)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~------------~~~~a~~~~~~~l~~~---  203 (365)
                      |.+....+..+  .++...|.+.+.-+                     .            ...++...+++.++.+   
T Consensus       627 P~s~y~~fk~A--~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~  704 (1238)
T KOG1127|consen  627 PLSKYGRFKEA--VMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS  704 (1238)
T ss_pred             cHhHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            98643333322  23334443332110                     0            1123444444444421   


Q ss_pred             -----CCCHHHHHHHHHHHHH--hCCHHHH----HHHHHHHHhc---CCCchhhhH-HHH---------hHHHHHHHHHH
Q 036703          204 -----PMNYDTWFDYIRLEER--VGNQERV----REVYERAIAN---VPPAEEKRY-WQR---------YIYLWINYALY  259 (365)
Q Consensus       204 -----p~~~~~~~~~~~~~~~--~~~~~~A----~~~~~~~~~~---~p~~~~~~~-~~~---------~~~~~~~~~~~  259 (365)
                           -++.-.|..+++...-  .-.++..    ..++..-+..   .|.+.-..+ ...         ....|.++|.-
T Consensus       705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin  784 (1238)
T KOG1127|consen  705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN  784 (1238)
T ss_pred             HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence                 1122234333332110  0000010    1111110000   111110000 000         01133333322


Q ss_pred             H-----hh--ccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHH
Q 036703          260 K-----EV--DAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKY  331 (365)
Q Consensus       260 ~-----~~--~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  331 (365)
                      +     ..  .+.+...|+..++++++..       .+ ..+|..+|.+ ...|++.-|..+|-+.+...|.+.-.|.++
T Consensus       785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-------ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl  856 (1238)
T KOG1127|consen  785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-------ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL  856 (1238)
T ss_pred             HHHHHHHcCCcchhHHHHHHHHHHHHHHh-------hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc
Confidence            1     11  1223347899999999986       33 7788888887 556899999999999999999999999999


Q ss_pred             HHHHhhccchhHHHHHHHHHhcCcCCCC
Q 036703          332 TELEKSLDETERARAIFELAIAQPILDL  359 (365)
Q Consensus       332 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~  359 (365)
                      +.+.....+++.|...|.++..++|.+.
T Consensus       857 gvL~l~n~d~E~A~~af~~~qSLdP~nl  884 (1238)
T KOG1127|consen  857 GVLVLENQDFEHAEPAFSSVQSLDPLNL  884 (1238)
T ss_pred             ceeEEecccHHHhhHHHHhhhhcCchhh
Confidence            9999999999999999999999999653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.75  E-value=5.4e-14  Score=119.44  Aligned_cols=328  Identities=13%  Similarity=0.083  Sum_probs=217.0

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      -++|....+.+++.+|.+...|..+|-++....++++|++.|..|+...|+ ..+|..++-+..+.++++.....-.+.+
T Consensus        57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LL  136 (700)
T KOG1156|consen   57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLL  136 (700)
T ss_pred             hHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            367888999999999999999999999999999999999999999999999 7999999999999999999999999999


Q ss_pred             HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhh---cCC-hhhHHHHHHHH------------------------
Q 036703           81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFL---ADD-HDEAEQLFVAF------------------------  132 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~-~~~~~~~~~~~------------------------  132 (365)
                      +..|.....|+.++..+...|++..|..+.+...+. .   |+. ...........                        
T Consensus       137 ql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t-~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i  215 (700)
T KOG1156|consen  137 QLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT-QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI  215 (700)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH
Confidence            999999999999999999999999999998888776 4   222 01111122222                        


Q ss_pred             ----------HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHH-HHHHHHHH
Q 036703          133 ----------AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMR-LQYEDGVR  201 (365)
Q Consensus       133 ----------~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~l~  201 (365)
                                +.++.   ..+++++|..+|...+..+|++  ...+..+....-...+..        ++. .+|...-+
T Consensus       216 ~Dkla~~e~ka~l~~---kl~~lEeA~~~y~~Ll~rnPdn--~~Yy~~l~~~lgk~~d~~--------~~lk~ly~~ls~  282 (700)
T KOG1156|consen  216 VDKLAFEETKADLLM---KLGQLEEAVKVYRRLLERNPDN--LDYYEGLEKALGKIKDML--------EALKALYAILSE  282 (700)
T ss_pred             HHHHHHhhhHHHHHH---HHhhHHhHHHHHHHHHhhCchh--HHHHHHHHHHHHHHhhhH--------HHHHHHHHHHhh
Confidence                      23333   5555555666665555555554  233333322221010000        122 33444333


Q ss_pred             cCCCCHHHHHHHHHHH----------------HHh-------------CCHHHHHHHHHHHH-------hcC---C-Cch
Q 036703          202 KNPMNYDTWFDYIRLE----------------ERV-------------GNQERVREVYERAI-------ANV---P-PAE  241 (365)
Q Consensus       202 ~~p~~~~~~~~~~~~~----------------~~~-------------~~~~~A~~~~~~~~-------~~~---p-~~~  241 (365)
                      ..|........=..+.                .+.             .++.+.. +.++.+       ...   + .+.
T Consensus       283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~  361 (700)
T KOG1156|consen  283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDD  361 (700)
T ss_pred             cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhhcccccCCCcccc
Confidence            3333321110000000                000             0100000 111111       000   0 000


Q ss_pred             hh-hHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHh
Q 036703          242 EK-RYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLE  319 (365)
Q Consensus       242 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~  319 (365)
                      .. ..-...+.....+++.+ -..|+++.|...+..|+...       |. ++.|..-+.++...|+++.|..+++.+.+
T Consensus       362 ~~~E~PttllWt~y~laqh~-D~~g~~~~A~~yId~AIdHT-------PTliEly~~KaRI~kH~G~l~eAa~~l~ea~e  433 (700)
T KOG1156|consen  362 GKQEPPTTLLWTLYFLAQHY-DKLGDYEVALEYIDLAIDHT-------PTLIELYLVKARIFKHAGLLDEAAAWLDEAQE  433 (700)
T ss_pred             cccCCchHHHHHHHHHHHHH-HHcccHHHHHHHHHHHhccC-------chHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence            00 00000122233345555 37899999999999999988       66 88899999999999999999999999999


Q ss_pred             hCcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703          320 WSPENCYAWSKYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       320 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                      +|-.+.-+-...+....+.++.++|.++..+--
T Consensus       434 lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFT  466 (700)
T KOG1156|consen  434 LDTADRAINSKCAKYMLRANEIEEAEEVLSKFT  466 (700)
T ss_pred             ccchhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence            987666666678889999999999988876543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=9.3e-16  Score=123.28  Aligned_cols=281  Identities=11%  Similarity=0.025  Sum_probs=219.6

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703           57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE  136 (365)
Q Consensus        57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  136 (365)
                      ...+..+.+..+|..|+..|..|+...|++...|...+..++..|++++|..-.+..++. .|..    +......++++
T Consensus        53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~-kd~~----~k~~~r~~~c~  127 (486)
T KOG0550|consen   53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL-KDGF----SKGQLREGQCH  127 (486)
T ss_pred             HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec-CCCc----cccccchhhhh
Confidence            344555667778889999999999999999999999999999999999999999888888 6665    55666666666


Q ss_pred             HhccccchhHHHHHHHHHH------------hccCCCch----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHH
Q 036703          137 EMGCNCKETDRARCIYKFA------------LDRIPKGR----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGV  200 (365)
Q Consensus       137 ~~~~~~~~~~~A~~~~~~~------------l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l  200 (365)
                      .   ..++..+|.+.|+..            -+..|...    ....-..-+.+....|+.+        .|...--..+
T Consensus       128 ~---a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~--------~a~~ea~~il  196 (486)
T KOG0550|consen  128 L---ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYD--------EAQSEAIDIL  196 (486)
T ss_pred             h---hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccch--------hHHHHHHHHH
Confidence            6   666666666554421            11112111    0111111134444556655        5777778889


Q ss_pred             HcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhH---HHHhHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 036703          201 RKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRY---WQRYIYLWINYALYKEVDAGDLERTRDVYRTL  277 (365)
Q Consensus       201 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  277 (365)
                      ++++.+.++....+.++...++.+.|+..|++++..+|++.....   --.-+..|..-+.-. ...|++..|.+.|..+
T Consensus       197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~-fk~G~y~~A~E~Ytea  275 (486)
T KOG0550|consen  197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA-FKNGNYRKAYECYTEA  275 (486)
T ss_pred             hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH-hhccchhHHHHHHHHh
Confidence            999999999999999999999999999999999999998754321   112244566666664 5899999999999999


Q ss_pred             HhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          278 FIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      |.++|+...  |...+|.+.+.+..+.|+..+|+.-.+.+++++|....++...+++++..+++++|.+.|+++++...
T Consensus       276 l~idP~n~~--~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  276 LNIDPSNKK--TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             hcCCccccc--hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999987654  55788889999999999999999999999999999999999999999999999999999999998775

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.72  E-value=2.4e-13  Score=109.30  Aligned_cols=300  Identities=14%  Similarity=0.089  Sum_probs=229.3

Q ss_pred             HHHhcCChhHHHHHHHHHHhhCCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-chHHHHHHHHHHHhhcchHHH
Q 036703           29 MEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQRARHIFERLVQCHPY-NLSAWINFADFEMKMGEVDRA  106 (365)
Q Consensus        29 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A  106 (365)
                      .-...|++.+|.+...++-+..+.+ -.++.-+......||.+.+-.++.++-+..++ ........+.+....|+++.|
T Consensus        93 ~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA  172 (400)
T COG3071          93 LKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA  172 (400)
T ss_pred             HHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence            3345799999999999988877774 55666678888999999999999999998443 566778889999999999999


Q ss_pred             HHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch--hHHHHH-HHHHHHHHcCCchh
Q 036703          107 RNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR--AEDLYR-KFLAFEKQYGDREG  183 (365)
Q Consensus       107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~-~~~~~~~~~~~~~~  183 (365)
                      +....++++. .|.+    +.+.....++|.   ..|++.+...++.+.-+..--++  ...+-. .+..+..+..+.+.
T Consensus       173 ~~~v~~ll~~-~pr~----~~vlrLa~r~y~---~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~  244 (400)
T COG3071         173 RENVDQLLEM-TPRH----PEVLRLALRAYI---RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG  244 (400)
T ss_pred             HHHHHHHHHh-CcCC----hHHHHHHHHHHH---HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999 9988    999999999999   99999999999988766432221  111111 11222223333322


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703          184 IEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD  263 (365)
Q Consensus       184 ~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  263 (365)
                      .+     .-....+..-+.-.+++.+-..++.-+...|+.++|.++.+.+++..-+..          +.. +...  ..
T Consensus       245 ~~-----gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----------L~~-~~~~--l~  306 (400)
T COG3071         245 SE-----GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----------LCR-LIPR--LR  306 (400)
T ss_pred             ch-----HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----------HHH-HHhh--cC
Confidence            11     111222222222234578888899999999999999999999999865542          222 2222  47


Q ss_pred             cCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhH
Q 036703          264 AGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETER  343 (365)
Q Consensus       264 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  343 (365)
                      .+++..-++..++.++.+|+.      |.++..+|.++.+.+.+.+|...|+.+++..| +..-|..++..+...|+..+
T Consensus       307 ~~d~~~l~k~~e~~l~~h~~~------p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~  379 (400)
T COG3071         307 PGDPEPLIKAAEKWLKQHPED------PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEE  379 (400)
T ss_pred             CCCchHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHH
Confidence            899999999999999998432      68899999999999999999999999999988 77888999999999999999


Q ss_pred             HHHHHHHHhcCc-CCCCCc
Q 036703          344 ARAIFELAIAQP-ILDLPE  361 (365)
Q Consensus       344 A~~~~~~a~~~~-~~~~p~  361 (365)
                      |..+++.++.+. +++.|.
T Consensus       380 A~~~r~e~L~~~~~~~~~s  398 (400)
T COG3071         380 AEQVRREALLLTRQPNLPS  398 (400)
T ss_pred             HHHHHHHHHHHhcCCCCcc
Confidence            999999998554 224443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=99.71  E-value=5.8e-14  Score=118.90  Aligned_cols=320  Identities=20%  Similarity=0.312  Sum_probs=186.9

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHH-HhccHHHHHHHHHHHHH
Q 036703            4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKL-RYNEVQRARHIFERLVQ   81 (365)
Q Consensus         4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~   81 (365)
                      .++..|...|...|.....|..+|....+.|..+.+.++|++++...|- ..+|..|..+.. ..|+.+..+..|++|..
T Consensus        63 ~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~  142 (577)
T KOG1258|consen   63 ALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKS  142 (577)
T ss_pred             HHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            3455555555556665555666666666666666666666666655555 455655554443 23455555555665555


Q ss_pred             hCCc---chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc-----cchhHHHHHHHH
Q 036703           82 CHPY---NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN-----CKETDRARCIYK  153 (365)
Q Consensus        82 ~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~  153 (365)
                      ....   +..+|-.+..+...+++......+|++.++. .-..   ....+..+-+...   .     ....+++...=.
T Consensus       143 ~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei-P~~~---~~~~f~~f~~~l~---~~~~~~l~~~d~~~~l~~  215 (577)
T KOG1258|consen  143 YVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI-PLHQ---LNRHFDRFKQLLN---QNEEKILLSIDELIQLRS  215 (577)
T ss_pred             hcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh-hhhH---hHHHHHHHHHHHh---cCChhhhcCHHHHHHHhh
Confidence            4432   3455666666555555566666666665555 1110   0111112222211   1     111222222111


Q ss_pred             HHhc--cCCCc-hhHHHHHHHHHHHHHcCCc-hhhh---HHH-------------HHHHHHHHHHHHHc-----CCC---
Q 036703          154 FALD--RIPKG-RAEDLYRKFLAFEKQYGDR-EGIE---DAI-------------AGKMRLQYEDGVRK-----NPM---  205 (365)
Q Consensus       154 ~~l~--~~p~~-~~~~~~~~~~~~~~~~~~~-~~~~---~~~-------------~~~a~~~~~~~l~~-----~p~---  205 (365)
                      ....  ..+.. ...+.+...+..-...+.. +...   ...             ....+..++..+..     .|.   
T Consensus       216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~a  295 (577)
T KOG1258|consen  216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQA  295 (577)
T ss_pred             hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHH
Confidence            1110  00000 0001111111000000000 0000   000             01122333333331     222   


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC
Q 036703          206 NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS  285 (365)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~  285 (365)
                      +...|..+..+....|+++.+...|++++-.+..-         ..+|+.|+.+++ ..|+.+-|..++.++.+...   
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y---------~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~---  362 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY---------DEFWIKYARWME-SSGDVSLANNVLARACKIHV---  362 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh---------HHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcC---
Confidence            34679999999999999999999999998877664         459999999996 77999999999999988853   


Q ss_pred             Ccchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHH
Q 036703          286 PRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARA  346 (365)
Q Consensus       286 ~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~  346 (365)
                         |+ +.+...++.++...|++..|+.++++..+..|+.+.+-...+.++.+.|+.+.+..
T Consensus       363 ---k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  363 ---KKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             ---CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence               33 77888889999999999999999999999889999999999999999999998884

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=5.2e-15  Score=119.07  Aligned_cols=269  Identities=12%  Similarity=0.045  Sum_probs=152.3

Q ss_pred             HHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHH
Q 036703           28 RMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRA  106 (365)
Q Consensus        28 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A  106 (365)
                      ..+.+..++..|+..+..|++.+|+ ...|...+..+...|+++.|.--.++.+++.|.........++++...++..+|
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A  136 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA  136 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence            3344444444455555555555554 344444444444445555555444444444444444444444444444444333


Q ss_pred             HHHHHHH------------HhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHH
Q 036703          107 RNVYECA------------VEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL  172 (365)
Q Consensus       107 ~~~~~~a------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  172 (365)
                      ...++..            -.. .|..  .+.-...-..-+.++.   ..|++++|...--..++.++.+....+..  +
T Consensus       137 ~~~~~~~~~~~~anal~~~~~~-~~s~s~~pac~~a~~lka~cl~---~~~~~~~a~~ea~~ilkld~~n~~al~vr--g  210 (486)
T KOG0550|consen  137 EEKLKSKQAYKAANALPTLEKL-APSHSREPACFKAKLLKAECLA---FLGDYDEAQSEAIDILKLDATNAEALYVR--G  210 (486)
T ss_pred             HHHhhhhhhhHHhhhhhhhhcc-cccccCCchhhHHHHhhhhhhh---hcccchhHHHHHHHHHhcccchhHHHHhc--c
Confidence            3322211            011 1111  0111222233345555   55666666666666665555542211111  1


Q ss_pred             HHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          173 AFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY------------DTWFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      ....-.++        .++++..|+++|+.+|++.            ..|..-|.-..+.|++..|.+.|..+|.++|++
T Consensus       211 ~~~yy~~~--------~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n  282 (486)
T KOG0550|consen  211 LCLYYNDN--------ADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN  282 (486)
T ss_pred             cccccccc--------hHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence            11111222        1245666666666665543            456667777788899999999999999999987


Q ss_pred             hhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHh
Q 036703          241 EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLE  319 (365)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~  319 (365)
                      ...     ...++.+.+... .+.|+..+|+.-...+++++       |. ...+..-+.++...+++++|.+.|+++++
T Consensus       283 ~~~-----naklY~nra~v~-~rLgrl~eaisdc~~Al~iD-------~syikall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  283 KKT-----NAKLYGNRALVN-IRLGRLREAISDCNEALKID-------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             cch-----hHHHHHHhHhhh-cccCCchhhhhhhhhhhhcC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            542     134666677775 68899999999999999887       44 55667778888888999999999999988


Q ss_pred             hCcc
Q 036703          320 WSPE  323 (365)
Q Consensus       320 ~~p~  323 (365)
                      ...+
T Consensus       350 ~~~s  353 (486)
T KOG0550|consen  350 LEKD  353 (486)
T ss_pred             hccc
Confidence            7654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=99.70  E-value=1.1e-13  Score=112.92  Aligned_cols=337  Identities=17%  Similarity=0.270  Sum_probs=240.8

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703            9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL   87 (365)
Q Consensus         9 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~   87 (365)
                      ++.-++.+|++...|+.+...+..+|..++-++.+++...-.|- +.+|..+..-....+++.....+|.+++...- +.
T Consensus        31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~l  109 (660)
T COG5107          31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NL  109 (660)
T ss_pred             HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cH
Confidence            45567789999999999999999999999999999999988887 89999999999999999999999999999877 69


Q ss_pred             HHHHHHHHHHHhhcch------HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHh------ccccchhHHHHHHHHHH
Q 036703           88 SAWINFADFEMKMGEV------DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM------GCNCKETDRARCIYKFA  155 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~  155 (365)
                      ++|..+...-.+.++.      -.-.+.|+-.+.. ..-+ +.+...|..++.+...      ...+.+.+..+..|.++
T Consensus       110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~-~~~e-~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra  187 (660)
T COG5107         110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGC-AIFE-PQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA  187 (660)
T ss_pred             hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhc-cccc-ccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence            9999998877765421      1223444444442 2111 2348899999988762      12567888999999999


Q ss_pred             hccCCCchhHHHHHHHHHHHHHcCCch---------hh-----------h------------------------------
Q 036703          156 LDRIPKGRAEDLYRKFLAFEKQYGDRE---------GI-----------E------------------------------  185 (365)
Q Consensus       156 l~~~p~~~~~~~~~~~~~~~~~~~~~~---------~~-----------~------------------------------  185 (365)
                      +.. |-.....+|..|-.++...+...         .+           .                              
T Consensus       188 l~t-P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN  266 (660)
T COG5107         188 LQT-PMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN  266 (660)
T ss_pred             HcC-ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence            975 44445678888876665432110         00           0                              


Q ss_pred             --------------HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch----------
Q 036703          186 --------------DAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE----------  241 (365)
Q Consensus       186 --------------~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----------  241 (365)
                                    +...++-.-+|++++...|-.+++|+.+.......++-++|....++++..+|.-.          
T Consensus       267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~  346 (660)
T COG5107         267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELV  346 (660)
T ss_pred             HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhc
Confidence                          00012233345667777777778888888777777787888777777777666510          


Q ss_pred             --hhhH----------------------------------------HHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHh
Q 036703          242 --EKRY----------------------------------------WQRYIYLWINYALYKEVDAGDLERTRDVYRTLFI  279 (365)
Q Consensus       242 --~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~  279 (365)
                        ...+                                        -+.+..+|+.+.... .+....+.|+.+|-++-+
T Consensus       347 nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v-~r~~Gl~aaR~~F~k~rk  425 (660)
T COG5107         347 NDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYV-LRKRGLEAARKLFIKLRK  425 (660)
T ss_pred             ccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHH-HHHhhHHHHHHHHHHHhc
Confidence              0000                                        012334555555554 466667888888888877


Q ss_pred             ccccCCCcchhHHHHHHHHHHHH-HhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          280 FYFSFSPRMEERRIFKKYIEMEL-CLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      .....      +++|..-+.++. ..|+..-|-.+|+-.+...|+++..-..+..++...|+.+.|+.+|+.++....
T Consensus       426 ~~~~~------h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~  497 (660)
T COG5107         426 EGIVG------HHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLE  497 (660)
T ss_pred             cCCCC------cceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence            63211      334444444433 468999999999999999999999999999999999999999999998876544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.70  E-value=1.5e-15  Score=110.51  Aligned_cols=124  Identities=11%  Similarity=0.047  Sum_probs=116.3

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 036703            6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP   84 (365)
Q Consensus         6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p   84 (365)
                      ..+|+++++.+|++   +..+|..+...|++++|...|++++..+|. ...|..+|.++...|++++|...|++++..+|
T Consensus        13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            46899999999985   667899999999999999999999999999 89999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           85 YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      +++..+..+|.++...|++++|+..|+++++. .|++    +..|...+.+..
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~-~p~~----~~~~~~~~~~~~  137 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM-SYAD----ASWSEIRQNAQI  137 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----hHHHHHHHHHHH
Confidence            99999999999999999999999999999999 9988    888887777655

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.69  E-value=9.7e-15  Score=116.97  Aligned_cols=188  Identities=12%  Similarity=0.057  Sum_probs=151.2

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH---
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS---   88 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---   88 (365)
                      ++..+..++..|..+...|++++|+..|++++..+|+    ..+|..++.++...|++++|+..|+++++.+|+++.   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            3456788999999999999999999999999999997    268899999999999999999999999999998776   


Q ss_pred             HHHHHHHHHHhh--------cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           89 AWINFADFEMKM--------GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        89 ~~~~~~~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      ++..+|.++...        |++++|++.|++++.. .|.+    ...+..+..+..   ..+..               
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~----~~~~~a~~~~~~---~~~~~---------------  165 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNS----EYAPDAKKRMDY---LRNRL---------------  165 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCC----hhHHHHHHHHHH---HHHHH---------------
Confidence            688888888876        8899999999999999 9987    444433322222   11100               


Q ss_pred             CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 036703          161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN---YDTWFDYIRLEERVGNQERVREVYERAIANV  237 (365)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  237 (365)
                          .......+.++...|+..        .|+..|++++...|++   ..++..++..+...|++++|..+++......
T Consensus       166 ----~~~~~~~a~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       166 ----AGKELYVARFYLKRGAYV--------AAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             ----HHHHHHHHHHHHHcCChH--------HHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence                111234455666778755        6889999999987765   5799999999999999999999988887766


Q ss_pred             C
Q 036703          238 P  238 (365)
Q Consensus       238 p  238 (365)
                      |
T Consensus       234 ~  234 (235)
T TIGR03302       234 P  234 (235)
T ss_pred             C
Confidence            5

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=99.69  E-value=1.3e-12  Score=110.82  Aligned_cols=309  Identities=15%  Similarity=0.232  Sum_probs=212.1

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHh-cCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEEN-LGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIF   76 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~   76 (365)
                      .+.+.++|++++...|-+.++|..|...... .|+.+.-+..|++|+.....    ...|-.++.+...+++......+|
T Consensus        95 ~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iy  174 (577)
T KOG1258|consen   95 AENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIY  174 (577)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHH
Confidence            4678999999999999999999998877664 57888899999999988765    689999999999999999999999


Q ss_pred             HHHHHhCCcchHH-HHHHHHHHHh-----h----------------------------------------cchHHHHHHH
Q 036703           77 ERLVQCHPYNLSA-WINFADFEMK-----M----------------------------------------GEVDRARNVY  110 (365)
Q Consensus        77 ~~~l~~~p~~~~~-~~~~~~~~~~-----~----------------------------------------~~~~~A~~~~  110 (365)
                      ++.++.--..... +..+-+....     .                                        +..+++....
T Consensus       175 eRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l  254 (577)
T KOG1258|consen  175 ERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTIL  254 (577)
T ss_pred             HHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHH
Confidence            9999843211111 1111111100     0                                        0111222111


Q ss_pred             HHHHhh------------------------h----hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703          111 ECAVEI------------------------F----LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       111 ~~a~~~------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      .+.+..                        +    .|. .......|..+..+..   ..|+++...-.|++++-.+..-
T Consensus       255 ~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl-~~aql~nw~~yLdf~i---~~g~~~~~~~l~ercli~cA~Y  330 (577)
T KOG1258|consen  255 KRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPL-DQAQLKNWRYYLDFEI---TLGDFSRVFILFERCLIPCALY  330 (577)
T ss_pred             HHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcc-cHHHHHHHHHHhhhhh---hcccHHHHHHHHHHHHhHHhhh
Confidence            111111                        0    111 1233456777777777   8888888888888887655543


Q ss_pred             hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703          163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR-KNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE  241 (365)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  241 (365)
                        ..+|..|+.+....|+..        .+..++.++.+ ..|+.+.+....+.+...+|++..|+.+++++....|.- 
T Consensus       331 --~efWiky~~~m~~~~~~~--------~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~-  399 (577)
T KOG1258|consen  331 --DEFWIKYARWMESSGDVS--------LANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGL-  399 (577)
T ss_pred             --HHHHHHHHHHHHHcCchh--------HHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-
Confidence              578888888887777644        45555666555 456667777888888888888888888888888887664 


Q ss_pred             hhhHHHHhHHHHHHHHHHHhhccCChhHHHH---HHHHHHhccccCCCcchh--HHHHHHHHHHHH-HhCCCccHHHHHH
Q 036703          242 EKRYWQRYIYLWINYALYKEVDAGDLERTRD---VYRTLFIFYFSFSPRMEE--RRIFKKYIEMEL-CLGNIDPCRKLYE  315 (365)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~A~~~~~  315 (365)
                              +.+-+..+.++ ...|+.+.+..   ++.....-..+     +.  +..+..++.+.. -.++.+.|+..+.
T Consensus       400 --------v~~~l~~~~~e-~r~~~~~~~~~~~~l~s~~~~~~~~-----~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~  465 (577)
T KOG1258|consen  400 --------VEVVLRKINWE-RRKGNLEDANYKNELYSSIYEGKEN-----NGILEKLYVKFARLRYKIREDADLARIILL  465 (577)
T ss_pred             --------hhhHHHHHhHH-HHhcchhhhhHHHHHHHHhcccccC-----cchhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence                    33555566664 57777777773   33333222111     11  445566666554 4678899999999


Q ss_pred             HHHhhCcchHHHHHHHHHHHhhcc
Q 036703          316 KYLEWSPENCYAWSKYTELEKSLD  339 (365)
Q Consensus       316 ~al~~~p~~~~~~~~~~~~~~~~g  339 (365)
                      ++++..|++-.+|..+..++...+
T Consensus       466 ~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  466 EANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HhhhcCCccHHHHHHHHHHHHhCC
Confidence            999999999999999999888776

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.68  E-value=7.8e-13  Score=114.90  Aligned_cols=279  Identities=15%  Similarity=0.164  Sum_probs=192.4

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      +++..-.+.++...|++++|++.++..-..-++ .......|.++.+.|++++|..+|...+..+|++...+..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            345555667777788888888888777766666 4555667788888888888888888888888888877777777663


Q ss_pred             hh-----cchHHHHHHHHHHHhhhhcCC------------hhhH----------------HHHHHHHHHHHHhccccchh
Q 036703           99 KM-----GEVDRARNVYECAVEIFLADD------------HDEA----------------EQLFVAFAKFEEMGCNCKET  145 (365)
Q Consensus        99 ~~-----~~~~~A~~~~~~a~~~~~~~~------------~~~~----------------~~~~~~~~~~~~~~~~~~~~  145 (365)
                      ..     ...+.-..+|+..... .|..            ...+                |.++..+-.+|.   .....
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~-yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~---d~~K~  159 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEK-YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK---DPEKA  159 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHh-CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc---ChhHH
Confidence            22     2456666777777666 6543            0011                222333333333   33333


Q ss_pred             HHHHHHHHHHhc---cC----------CCchhHHHHHH--HHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHH
Q 036703          146 DRARCIYKFALD---RI----------PKGRAEDLYRK--FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTW  210 (365)
Q Consensus       146 ~~A~~~~~~~l~---~~----------p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~  210 (365)
                      .-...++.....   ..          ...+...+|..  +++.+...|+.+        +|...+++++...|..++.+
T Consensus       160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~--------~Al~~Id~aI~htPt~~ely  231 (517)
T PF12569_consen  160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYE--------KALEYIDKAIEHTPTLVELY  231 (517)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHhcCCCcHHHH
Confidence            333333333221   11          11123445644  477777888855        79999999999999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcccc-CCCcch
Q 036703          211 FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS-FSPRME  289 (365)
Q Consensus       211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~  289 (365)
                      ...|.++...|++.+|...++.+...++.+.         .+-...+.++ ++.|++++|.+.+....+...+ ...+ -
T Consensus       232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR---------yiNsK~aKy~-LRa~~~e~A~~~~~~Ftr~~~~~~~~L-~  300 (517)
T PF12569_consen  232 MTKARILKHAGDLKEAAEAMDEARELDLADR---------YINSKCAKYL-LRAGRIEEAEKTASLFTREDVDPLSNL-N  300 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhCChhhH---------HHHHHHHHHH-HHCCCHHHHHHHHHhhcCCCCCcccCH-H
Confidence            9999999999999999999999999998874         2555666766 7999999999999888766421 1111 1


Q ss_pred             h-HHHH--HHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703          290 E-RRIF--KKYIEMELCLGNIDPCRKLYEKYLEWS  321 (365)
Q Consensus       290 ~-~~~~--~~~~~~~~~~~~~~~A~~~~~~al~~~  321 (365)
                      + .-+|  ...|..+.+.|++..|++.|..+.+..
T Consensus       301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF  335 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            1 2233  456788899999999999999998764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.68  E-value=4.4e-13  Score=114.54  Aligned_cols=295  Identities=13%  Similarity=-0.026  Sum_probs=202.2

Q ss_pred             hhhHHHHHHHHHHhCCCc---hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHH----hccHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRV---DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLR----YNEVQRAR   73 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~----~~~~~~A~   73 (365)
                      .+.+...+.++.+..|.+   .......+......|++++|...++++++.+|+ ...+.. +..+..    .+....+.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~  100 (355)
T cd05804          22 RPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVA  100 (355)
T ss_pred             cchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHH
Confidence            455677788888777755   445666788899999999999999999999999 445542 333333    34455555


Q ss_pred             HHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 036703           74 HIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK  153 (365)
Q Consensus        74 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  153 (365)
                      ..+......+|........++.++...|++++|...++++++. .|.+    ...+..++.++.   ..|++++|+..++
T Consensus       101 ~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-~p~~----~~~~~~la~i~~---~~g~~~eA~~~l~  172 (355)
T cd05804         101 RVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-NPDD----AWAVHAVAHVLE---MQGRFKEGIAFME  172 (355)
T ss_pred             HHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC----cHHHHHHHHHHH---HcCCHHHHHHHHH
Confidence            5555544566767777788899999999999999999999999 9988    889999999999   9999999999999


Q ss_pred             HHhccCCCch--hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH-HHHH-HH---HHHHHHhCCHHHH
Q 036703          154 FALDRIPKGR--AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY-DTWF-DY---IRLEERVGNQERV  226 (365)
Q Consensus       154 ~~l~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~-~~~~-~~---~~~~~~~~~~~~A  226 (365)
                      +++...|...  ....|..++.++...|+.+        .|+..|++++...|... .... ..   .......|....+
T Consensus       173 ~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  244 (355)
T cd05804         173 SWRDTWDCSSMLRGHNWWHLALFYLERGDYE--------AALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG  244 (355)
T ss_pred             hhhhccCCCcchhHHHHHHHHHHHHHCCCHH--------HHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence            9999876432  2345667888888999866        69999999886666221 1111 11   1222333433333


Q ss_pred             HHH---HHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcccc---CCCcchhHHHHHHHHHH
Q 036703          227 REV---YERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS---FSPRMEERRIFKKYIEM  300 (365)
Q Consensus       227 ~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~  300 (365)
                      ...   ........|....       .......+... ...|+.+.|...++........   ....+....+....+..
T Consensus       245 ~~w~~~~~~~~~~~~~~~~-------~~~~~~~a~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~  316 (355)
T cd05804         245 DRWEDLADYAAWHFPDHGL-------AFNDLHAALAL-AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALY  316 (355)
T ss_pred             HHHHHHHHHHHhhcCcccc-------hHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHH
Confidence            322   2222111122110       11222344444 5788999999999887665322   11111124555667777


Q ss_pred             HHHhCCCccHHHHHHHHHhhC
Q 036703          301 ELCLGNIDPCRKLYEKYLEWS  321 (365)
Q Consensus       301 ~~~~~~~~~A~~~~~~al~~~  321 (365)
                      +...|++++|...+..++...
T Consensus       317 ~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         317 AFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHHHH
Confidence            889999999999999998753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.67  E-value=1.5e-14  Score=115.89  Aligned_cols=155  Identities=17%  Similarity=0.101  Sum_probs=136.3

Q ss_pred             ChhhHHHHHHHHHHhCCCch---HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h---HHHHHHHHHHHHh-------
Q 036703            1 FIDHGRNAWDRVVTLSPRVD---QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H---EGWLSYIKFKLRY-------   66 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~~~~-------   66 (365)
                      +++.|...|++++..+|+++   .+|..+|.++...|++++|+..|+++++.+|+ .   .+|..++.++...       
T Consensus        48 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~  127 (235)
T TIGR03302        48 DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRD  127 (235)
T ss_pred             CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCC
Confidence            57899999999999999875   67899999999999999999999999999997 2   3688888888765       


Q ss_pred             -ccHHHHHHHHHHHHHhCCcchHHH-----------------HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHH
Q 036703           67 -NEVQRARHIFERLVQCHPYNLSAW-----------------INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQL  128 (365)
Q Consensus        67 -~~~~~A~~~~~~~l~~~p~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  128 (365)
                       |++++|...|++++..+|++...+                 ..+|.++...|++.+|+..|+++++. .|+. +..+.+
T Consensus       128 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~-~~~~~a  205 (235)
T TIGR03302       128 QTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN-YPDT-PATEEA  205 (235)
T ss_pred             HHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-CCCC-cchHHH
Confidence             889999999999999999886543                 35678888999999999999999999 8875 556789


Q ss_pred             HHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703          129 FVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      +..++..+.   ..|++++|..+++......|
T Consensus       206 ~~~l~~~~~---~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       206 LARLVEAYL---KLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHH---HcCCHHHHHHHHHHHHhhCC
Confidence            999999999   99999999999988776655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=99.66  E-value=3.1e-12  Score=105.89  Aligned_cols=341  Identities=17%  Similarity=0.223  Sum_probs=213.3

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhcc-HHHHHHHHHHHHH
Q 036703            4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNE-VQRARHIFERLVQ   81 (365)
Q Consensus         4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~   81 (365)
                      +...+|++++...|.+..+|..++.+..+.+.+.+...+|.+++..+|+ +.+|...|..+...+. .+.|+.+|.++++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            3456899999999999999999999999999999999999999999999 8999999988777664 9999999999999


Q ss_pred             hCCcchHHHHHHHHHHHhhc---------------ch----HHHHH----------------------HH---HHHHhhh
Q 036703           82 CHPYNLSAWINFADFEMKMG---------------EV----DRARN----------------------VY---ECAVEIF  117 (365)
Q Consensus        82 ~~p~~~~~~~~~~~~~~~~~---------------~~----~~A~~----------------------~~---~~a~~~~  117 (365)
                      .+|+++.+|..+-.+....-               +.    ++...                      +.   +.+-+.+
T Consensus       169 ~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~  248 (568)
T KOG2396|consen  169 FNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQ  248 (568)
T ss_pred             cCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHH
Confidence            99999999998877654210               00    00000                      00   0000000


Q ss_pred             ------hcCChhhHHHHHHHHHHHHH----h----c--------cccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 036703          118 ------LADDHDEAEQLFVAFAKFEE----M----G--------CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE  175 (365)
Q Consensus       118 ------~~~~~~~~~~~~~~~~~~~~----~----~--------~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  175 (365)
                            ....++..+..|..+++-..    .    +        ...-.-+....+|+.+++..|.   ..+|..|+.+.
T Consensus       249 k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t---~sm~e~YI~~~  325 (568)
T KOG2396|consen  249 KNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPT---ESMWECYITFC  325 (568)
T ss_pred             HHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhH---HHHHHHHHHHH
Confidence                  00001122444544443222    0    0        0011234566788888887776   35777776655


Q ss_pred             HHcCCchhhhHHHHHHHHHHHHHH----------------------------------H-HcCCCCHHHHHHHHHHHHHh
Q 036703          176 KQYGDREGIEDAIAGKMRLQYEDG----------------------------------V-RKNPMNYDTWFDYIRLEERV  220 (365)
Q Consensus       176 ~~~~~~~~~~~~~~~~a~~~~~~~----------------------------------l-~~~p~~~~~~~~~~~~~~~~  220 (365)
                      ...-....  ...+.....+++.+                                  . ....++..+|..........
T Consensus       326 lE~~~~~r--~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s  403 (568)
T KOG2396|consen  326 LERFTFLR--GKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIES  403 (568)
T ss_pred             HHHHHhhh--hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhh
Confidence            43322110  00111111122221                                  1 22334555666555554422


Q ss_pred             -CCHHHHHHHHHHHHhcCCCchhhhHHHH--------------------------hHHHHHHHHHHHhhccCChhHHHHH
Q 036703          221 -GNQERVREVYERAIANVPPAEEKRYWQR--------------------------YIYLWINYALYKEVDAGDLERTRDV  273 (365)
Q Consensus       221 -~~~~~A~~~~~~~~~~~p~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~a~~~  273 (365)
                       .+++--....-..++..+.+.....|..                          .+.+-..+..++ .+.|.+..|+..
T Consensus       404 ~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~-~e~~~~~~ark~  482 (568)
T KOG2396|consen  404 KSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWA-YESGGYKKARKV  482 (568)
T ss_pred             cchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHH-HHhcchHHHHHH
Confidence             1222111111111222222211111110                          112223344454 477889999999


Q ss_pred             HHHHHhccccCCCcchhHHHHHHHHHHHHH--hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHH
Q 036703          274 YRTLFIFYFSFSPRMEERRIFKKYIEMELC--LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA  351 (365)
Q Consensus       274 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  351 (365)
                      |.+.....|      |...++...++++..  .-+...++++|++++.....++++|..|..++..+|..+.+-.+|.+|
T Consensus       483 y~~l~~lpp------~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra  556 (568)
T KOG2396|consen  483 YKSLQELPP------FSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRA  556 (568)
T ss_pred             HHHHHhCCC------ccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHH
Confidence            999888853      447788888888753  334889999999999988899999999999999999999999999999


Q ss_pred             hcCcC
Q 036703          352 IAQPI  356 (365)
Q Consensus       352 ~~~~~  356 (365)
                      ++.-.
T Consensus       557 ~ktl~  561 (568)
T KOG2396|consen  557 MKTLQ  561 (568)
T ss_pred             HHhhC
Confidence            98765

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.65  E-value=3.5e-12  Score=102.74  Aligned_cols=284  Identities=11%  Similarity=0.071  Sum_probs=211.7

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFER   78 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~   78 (365)
                      +|.+|.....+.-+..+.....+..-++...+.|+.+.|-.++.++-+..++  ....+..+.+....|+++.|+.-..+
T Consensus        99 ~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~  178 (400)
T COG3071          99 DFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQ  178 (400)
T ss_pred             cHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            4678888888888878887777888889999999999999999999998555  56677888999999999999999999


Q ss_pred             HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH----HHHHHHHHHHHhccccchhHHHHHHHHH
Q 036703           79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE----QLFVAFAKFEEMGCNCKETDRARCIYKF  154 (365)
Q Consensus        79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~  154 (365)
                      ++...|.++.+.....++|.+.|++.....+..+..+. .--++++..    .+|..+.+=..   ..+..+.-....+ 
T Consensus       179 ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~~le~~a~~glL~q~~---~~~~~~gL~~~W~-  253 (400)
T COG3071         179 LLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAARLEQQAWEGLLQQAR---DDNGSEGLKTWWK-  253 (400)
T ss_pred             HHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHH-
Confidence            99999999999999999999999999999999988876 322211111    12222222111   1222222222222 


Q ss_pred             HhccCCCch--hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 036703          155 ALDRIPKGR--AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYER  232 (365)
Q Consensus       155 ~l~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~  232 (365)
                         ..|...  ++.+-..++.-....|+.+        .|.++...+++..-+.. +...++.  ...++...-++..++
T Consensus       254 ---~~pr~lr~~p~l~~~~a~~li~l~~~~--------~A~~~i~~~Lk~~~D~~-L~~~~~~--l~~~d~~~l~k~~e~  319 (400)
T COG3071         254 ---NQPRKLRNDPELVVAYAERLIRLGDHD--------EAQEIIEDALKRQWDPR-LCRLIPR--LRPGDPEPLIKAAEK  319 (400)
T ss_pred             ---hccHHhhcChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHhccChh-HHHHHhh--cCCCCchHHHHHHHH
Confidence               222211  2457777887777888766        58888888887654443 2222222  256788888888899


Q ss_pred             HHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHH
Q 036703          233 AIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRK  312 (365)
Q Consensus       233 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  312 (365)
                      .++..|+++.         ++..+|.++ ...+.+.+|...|+.+++..       |+..-+..++..+.+.|+..+|..
T Consensus       320 ~l~~h~~~p~---------L~~tLG~L~-~k~~~w~kA~~~leaAl~~~-------~s~~~~~~la~~~~~~g~~~~A~~  382 (400)
T COG3071         320 WLKQHPEDPL---------LLSTLGRLA-LKNKLWGKASEALEAALKLR-------PSASDYAELADALDQLGEPEEAEQ  382 (400)
T ss_pred             HHHhCCCChh---------HHHHHHHHH-HHhhHHHHHHHHHHHHHhcC-------CChhhHHHHHHHHHHcCChHHHHH
Confidence            9998888864         777788887 68889999999999988887       666777888888889999999999


Q ss_pred             HHHHHHhh
Q 036703          313 LYEKYLEW  320 (365)
Q Consensus       313 ~~~~al~~  320 (365)
                      +++.++..
T Consensus       383 ~r~e~L~~  390 (400)
T COG3071         383 VRREALLL  390 (400)
T ss_pred             HHHHHHHH
Confidence            99888754

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.65  E-value=1.8e-13  Score=117.90  Aligned_cols=220  Identities=18%  Similarity=0.165  Sum_probs=186.5

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK   99 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~   99 (365)
                      ...-..++..+.+.|-...|..+|++.       ..|-..+.+|...|+..+|..+..+-++ .|.++..|..+|++...
T Consensus       398 Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  398 WQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHD  469 (777)
T ss_pred             chHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccC
Confidence            455678999999999999999999987       5788889999999999999999999999 45589999988888776


Q ss_pred             hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcC
Q 036703          100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG  179 (365)
Q Consensus       100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  179 (365)
                      ..-+++|.++.+..-           ..+...+|....   ++++++++.+.++..++.+|..  ...|+.++....+.+
T Consensus       470 ~s~yEkawElsn~~s-----------arA~r~~~~~~~---~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqle  533 (777)
T KOG1128|consen  470 PSLYEKAWELSNYIS-----------ARAQRSLALLIL---SNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLE  533 (777)
T ss_pred             hHHHHHHHHHhhhhh-----------HHHHHhhccccc---cchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHh
Confidence            655555555544332           445556666666   7899999999999999999986  678999888888887


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHH
Q 036703          180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY  259 (365)
Q Consensus       180 ~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  259 (365)
                      +..        .|...|.+++...|++..+|.+++..+...|+-.+|...+.++++.+-.+.         .+|.+|...
T Consensus       534 k~q--------~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w---------~iWENymlv  596 (777)
T KOG1128|consen  534 KEQ--------AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW---------QIWENYMLV  596 (777)
T ss_pred             hhH--------HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC---------eeeechhhh
Confidence            754        699999999999999999999999999999999999999999999985553         388888888


Q ss_pred             HhhccCChhHHHHHHHHHHhcc
Q 036703          260 KEVDAGDLERTRDVYRTLFIFY  281 (365)
Q Consensus       260 ~~~~~~~~~~a~~~~~~a~~~~  281 (365)
                      . ...|.+++|++.+.+.+...
T Consensus       597 s-vdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  597 S-VDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             h-hhcccHHHHHHHHHHHHHhh
Confidence            6 69999999999999998873

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.65  E-value=1e-14  Score=111.97  Aligned_cols=119  Identities=8%  Similarity=0.120  Sum_probs=112.1

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHH-HHhcc--HHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFK-LRYNE--VQRARHIFE   77 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~-~~~~~--~~~A~~~~~   77 (365)
                      .+++...++++++.+|++...|..+|.++...|++++|+..|++++++.|+ ..++..++.++ ...|+  .++|..+++
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~  134 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMID  134 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            467888999999999999999999999999999999999999999999999 89999999864 67777  599999999


Q ss_pred             HHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           78 RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        78 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      ++++.+|+++.++..+|..+.+.|++++|+..++++++. .|.+
T Consensus       135 ~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~  177 (198)
T PRK10370        135 KALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPR  177 (198)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Confidence            999999999999999999999999999999999999999 8775

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=1.3e-12  Score=98.77  Aligned_cols=177  Identities=13%  Similarity=0.077  Sum_probs=131.8

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchH
Q 036703           26 YIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVD  104 (365)
Q Consensus        26 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  104 (365)
                      ..-.....|..+-|..++.+.-...|. .+.-...|..+...|++++|.++|++.++.+|.+..++..-..+...+|+.-
T Consensus        58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l  137 (289)
T KOG3060|consen   58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL  137 (289)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH
Confidence            344445567777788888877777777 5666667777777888888888888888888887777777777777778877


Q ss_pred             HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhh
Q 036703          105 RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGI  184 (365)
Q Consensus       105 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  184 (365)
                      +|++.+..-++. ++.+    .++|..++.+|.   ..|++++|.-.+++.+=..|.+  ..++..+++...-.|..+. 
T Consensus       138 ~aIk~ln~YL~~-F~~D----~EAW~eLaeiY~---~~~~f~kA~fClEE~ll~~P~n--~l~f~rlae~~Yt~gg~eN-  206 (289)
T KOG3060|consen  138 EAIKELNEYLDK-FMND----QEAWHELAEIYL---SEGDFEKAAFCLEELLLIQPFN--PLYFQRLAEVLYTQGGAEN-  206 (289)
T ss_pred             HHHHHHHHHHHH-hcCc----HHHHHHHHHHHH---hHhHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHHhhHHH-
Confidence            888888888888 8777    888888888888   8888888888888888777776  4667777777666665443 


Q ss_pred             hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 036703          185 EDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLE  217 (365)
Q Consensus       185 ~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~  217 (365)
                          +..+++.|.++++.+|.+...|+.+..+.
T Consensus       207 ----~~~arkyy~~alkl~~~~~ral~GI~lc~  235 (289)
T KOG3060|consen  207 ----LELARKYYERALKLNPKNLRALFGIYLCG  235 (289)
T ss_pred             ----HHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence                34677888888888887777776665543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.61  E-value=4.7e-14  Score=102.71  Aligned_cols=113  Identities=19%  Similarity=0.146  Sum_probs=107.3

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhc
Q 036703           40 RQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA  119 (365)
Q Consensus        40 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  119 (365)
                      ...|+++++.+|+.  +..++..+...|++++|...|++++..+|++..+|..+|.++...|++++|+..|++++.. .|
T Consensus        13 ~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p   89 (144)
T PRK15359         13 EDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DA   89 (144)
T ss_pred             HHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CC
Confidence            46899999999984  5577889999999999999999999999999999999999999999999999999999999 99


Q ss_pred             CChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703          120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      .+    +..+..+|.++.   ..|++++|+..|+++++..|.+
T Consensus        90 ~~----~~a~~~lg~~l~---~~g~~~eAi~~~~~Al~~~p~~  125 (144)
T PRK15359         90 SH----PEPVYQTGVCLK---MMGEPGLAREAFQTAIKMSYAD  125 (144)
T ss_pred             CC----cHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC
Confidence            98    999999999999   9999999999999999999987

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=2.4e-12  Score=97.41  Aligned_cols=189  Identities=14%  Similarity=0.124  Sum_probs=145.2

Q ss_pred             cHHHHHHHHHHHHHhCC------cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc
Q 036703           68 EVQRARHIFERLVQCHP------YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN  141 (365)
Q Consensus        68 ~~~~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (365)
                      +.++..++....+...+      +--.++-.........|+.+-|..++++.... +|.+    ..+-...|..+.   .
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S----~RV~~lkam~lE---a   98 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGS----KRVGKLKAMLLE---A   98 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCC----hhHHHHHHHHHH---H
Confidence            45555555555554333      22233344455556689999999999999999 8888    999999999999   9


Q ss_pred             cchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 036703          142 CKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVG  221 (365)
Q Consensus       142 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  221 (365)
                      .|.+++|+++|++.++.+|.+  ..++..-+.+....|...        .|++.+...++.++.+.++|..++++|...|
T Consensus        99 ~~~~~~A~e~y~~lL~ddpt~--~v~~KRKlAilka~GK~l--------~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~  168 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDDPTD--TVIRKRKLAILKAQGKNL--------EAIKELNEYLDKFMNDQEAWHELAEIYLSEG  168 (289)
T ss_pred             hhchhhHHHHHHHHhccCcch--hHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence            999999999999999999987  455666666666777654        5889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc
Q 036703          222 NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY  281 (365)
Q Consensus       222 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~  281 (365)
                      ++++|.-++++++-..|.++.  .+.++.++.+-.|.     ..+..-|+++|.++++..
T Consensus       169 ~f~kA~fClEE~ll~~P~n~l--~f~rlae~~Yt~gg-----~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQPFNPL--YFQRLAEVLYTQGG-----AENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHHHHHHHcCCCcHH--HHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHhC
Confidence            999999999999999999863  33333333333222     235677888888888877

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.58  E-value=2e-13  Score=104.80  Aligned_cols=123  Identities=15%  Similarity=0.146  Sum_probs=114.8

Q ss_pred             cCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH-Hhhcc--hHHHHH
Q 036703           33 LGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE-MKMGE--VDRARN  108 (365)
Q Consensus        33 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~-~~~~~--~~~A~~  108 (365)
                      .++.++++..++++++.+|+ ...|..+|.++...|+++.|...|+++++..|+++.++..+|.++ ...|+  .++|+.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            45678899999999999999 899999999999999999999999999999999999999999974 67777  599999


Q ss_pred             HHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          109 VYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       109 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      +++++++. .|++    ..++..+|..+.   ..|++++|+..++++++..|...
T Consensus       132 ~l~~al~~-dP~~----~~al~~LA~~~~---~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        132 MIDKALAL-DANE----VTALMLLASDAF---MQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHh-CCCC----hhHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCCc
Confidence            99999999 9998    999999999999   99999999999999999888754

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.58  E-value=3.2e-13  Score=121.60  Aligned_cols=142  Identities=16%  Similarity=0.124  Sum_probs=135.5

Q ss_pred             HHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH
Q 036703           12 VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW   90 (365)
Q Consensus        12 ~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   90 (365)
                      ..+..|.+++++..+|.+..+.|.+++|...+++++++.|+ ..++..++.++.+.+.+++|+..+++++...|++....
T Consensus        78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~  157 (694)
T PRK15179         78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREI  157 (694)
T ss_pred             HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHH
Confidence            34557999999999999999999999999999999999999 79999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703           91 INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                      ..+|.++.+.|++++|..+|++++.. .|++    +.+|..+|..+.   ..|+.++|...|+++++...+
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~----~~~~~~~a~~l~---~~G~~~~A~~~~~~a~~~~~~  220 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSRQ-HPEF----ENGYVGWAQSLT---RRGALWRARDVLQAGLDAIGD  220 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhc-CCCc----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhhCc
Confidence            99999999999999999999999998 8887    999999999999   999999999999999987554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.57  E-value=2.9e-13  Score=98.43  Aligned_cols=114  Identities=15%  Similarity=0.191  Sum_probs=110.0

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703            7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY   85 (365)
Q Consensus         7 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~   85 (365)
                      +.|++++..+|++..+...+|..+...|++++|...|++++..+|. ...|..++.++...|++++|...+++++..+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999999999999999999998 799999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      ++..+..+|.++...|++++|...|+++++. .|++
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~  118 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEI-CGEN  118 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cccc
Confidence            9999999999999999999999999999999 8876

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=1.6e-11  Score=97.61  Aligned_cols=189  Identities=13%  Similarity=-0.004  Sum_probs=90.9

Q ss_pred             hhhHHHHHHHHHHhCCCch-HHHHHHHHHHHhcCChhHHHHHHHHHHhh-CCChHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVD-QLWNNYIRMEENLGNVAGARQIFERWMHW-MPDHEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      |..|+.+++-.+..+.... ..-..+|.++...|++++|...|.-+... +|...+|..++.+..-.|.+.+|.++-.++
T Consensus        38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            4555666555554432221 22333445566666677666666665542 222566666666666666666666554332


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  159 (365)
                          |+++-....+-.+-.+.|+-++-..+-+..-..         .+-...++.++.   ..-.+.+|+++|++.+..+
T Consensus       118 ----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~---------~EdqLSLAsvhY---mR~HYQeAIdvYkrvL~dn  181 (557)
T KOG3785|consen  118 ----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT---------LEDQLSLASVHY---MRMHYQEAIDVYKRVLQDN  181 (557)
T ss_pred             ----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---------HHHHHhHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence                322222222222222333322222211111111         233344555555   5566777777777777766


Q ss_pred             CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 036703          160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRL  216 (365)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~  216 (365)
                      |.-.-..++.++..  .+..-++        -+.+++.-.++..|+++-+....+..
T Consensus       182 ~ey~alNVy~ALCy--yKlDYyd--------vsqevl~vYL~q~pdStiA~NLkacn  228 (557)
T KOG3785|consen  182 PEYIALNVYMALCY--YKLDYYD--------VSQEVLKVYLRQFPDSTIAKNLKACN  228 (557)
T ss_pred             hhhhhhHHHHHHHH--Hhcchhh--------hHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            65432233333322  2222111        34556666666777776555544443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.55  E-value=4.7e-12  Score=115.21  Aligned_cols=242  Identities=10%  Similarity=0.056  Sum_probs=122.0

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA   94 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~   94 (365)
                      +|.+..+|..++..+...+++++|+.+++.+++.+|+ ...|...|.++.+.+++..+..+  .++...+          
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~----------   94 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS----------   94 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc----------
Confidence            3444555555555555555555555555555555555 34444444444444443333333  2222222          


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703           95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF  174 (365)
Q Consensus        95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  174 (365)
                          ...++ .+.+.+-..+.. .|.+    ..++..+|.+|.   +.|+.++|...|+++++.+|.+  +.+...++.+
T Consensus        95 ----~~~~~-~~ve~~~~~i~~-~~~~----k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~~D~~n--~~aLNn~AY~  159 (906)
T PRK14720         95 ----QNLKW-AIVEHICDKILL-YGEN----KLALRTLAEAYA---KLNENKKLKGVWERLVKADRDN--PEIVKKLATS  159 (906)
T ss_pred             ----cccch-hHHHHHHHHHHh-hhhh----hHHHHHHHHHHH---HcCChHHHHHHHHHHHhcCccc--HHHHHHHHHH
Confidence                11222 222222222222 2332    445555555555   5555555555555555555554  3444444444


Q ss_pred             HHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHH
Q 036703          175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWI  254 (365)
Q Consensus       175 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  254 (365)
                      +... +        .++|+..+.+++..              +...+++..+.+++++.+..+|.+.+            
T Consensus       160 ~ae~-d--------L~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d------------  204 (906)
T PRK14720        160 YEEE-D--------KEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFD------------  204 (906)
T ss_pred             HHHh-h--------HHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccch------------
Confidence            4433 2        22455555555543              33344555555555555555555432            


Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHH
Q 036703          255 NYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTEL  334 (365)
Q Consensus       255 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  334 (365)
                                    .-..+.++.+.... ..   .-.+++.-+-..|...++++++..+++.+++.+|+|..+...++.+
T Consensus       205 --------------~f~~i~~ki~~~~~-~~---~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~  266 (906)
T PRK14720        205 --------------FFLRIERKVLGHRE-FT---RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF  266 (906)
T ss_pred             --------------HHHHHHHHHHhhhc-cc---hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence                          22222222222210 00   1133444555666778889999999999999999888888888888


Q ss_pred             Hhh
Q 036703          335 EKS  337 (365)
Q Consensus       335 ~~~  337 (365)
                      +..
T Consensus       267 y~~  269 (906)
T PRK14720        267 YKE  269 (906)
T ss_pred             HHH
Confidence            763

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.55  E-value=2.3e-12  Score=117.21  Aligned_cols=206  Identities=11%  Similarity=0.039  Sum_probs=139.9

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      ++++|..+.+.+++.+|+...+|+.+|.++.+.++...+.-+  +++...+...             ++ .+.+.+...+
T Consensus        46 ~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~-------------~~-~~ve~~~~~i  109 (906)
T PRK14720         46 LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL-------------KW-AIVEHICDKI  109 (906)
T ss_pred             CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-------------ch-hHHHHHHHHH
Confidence            478999999999999999999999999999999998887766  6666555422             22 3444444455


Q ss_pred             HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      ...|.+..++..+|.+|.+.|+.++|..+|+++++. .|.+    +.+...+|.++.   .. +.++|+.++.+++...-
T Consensus       110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D~~n----~~aLNn~AY~~a---e~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA-DRDN----PEIVKKLATSYE---EE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-Cccc----HHHHHHHHHHHH---Hh-hHHHHHHHHHHHHHHHH
Confidence            556667778888888888888888888888888888 7777    888888888888   77 88888888888876421


Q ss_pred             C----chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 036703          161 K----GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK--NPMNYDTWFDYIRLEERVGNQERVREVYERAI  234 (365)
Q Consensus       161 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  234 (365)
                      .    +....+|..+.......++.          -..+.++.+..  ...-...+.-+-..|...+++++++.+++.++
T Consensus       181 ~~kq~~~~~e~W~k~~~~~~~d~d~----------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL  250 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHYNSDDFDF----------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL  250 (906)
T ss_pred             hhhcchHHHHHHHHHHhcCcccchH----------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            1    11233444443322222211          11111222211  11223455555566777788888888888888


Q ss_pred             hcCCCch
Q 036703          235 ANVPPAE  241 (365)
Q Consensus       235 ~~~p~~~  241 (365)
                      +..|.+.
T Consensus       251 ~~~~~n~  257 (906)
T PRK14720        251 EHDNKNN  257 (906)
T ss_pred             hcCCcch
Confidence            8888874

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.54  E-value=2.3e-11  Score=105.88  Aligned_cols=272  Identities=12%  Similarity=0.094  Sum_probs=195.7

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA  133 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  133 (365)
                      ++.+-.+.++...|++++|+..+.+.....++...+....|.++.+.|+.++|..+|...++. +|++    ...+..+.
T Consensus         5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-NPdn----~~Yy~~L~   79 (517)
T PF12569_consen    5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-NPDN----YDYYRGLE   79 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCc----HHHHHHHH
Confidence            344556678889999999999999999999988999999999999999999999999999999 9998    77777777


Q ss_pred             HHHHhc--cccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 036703          134 KFEEMG--CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWF  211 (365)
Q Consensus       134 ~~~~~~--~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~  211 (365)
                      .+....  ......+....+|++.-...|....+. ...   +....|+  .    ....+...+...+..  .-+.++.
T Consensus        80 ~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~-rl~---L~~~~g~--~----F~~~~~~yl~~~l~K--gvPslF~  147 (517)
T PF12569_consen   80 EALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR-RLP---LDFLEGD--E----FKERLDEYLRPQLRK--GVPSLFS  147 (517)
T ss_pred             HHHhhhcccccccHHHHHHHHHHHHHhCccccchh-Hhh---cccCCHH--H----HHHHHHHHHHHHHhc--CCchHHH
Confidence            776300  012356777888888877777642110 110   1101111  0    112344444555543  2345555


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhc---CC----------CchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 036703          212 DYIRLEERVGNQERVREVYERAIAN---VP----------PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF  278 (365)
Q Consensus       212 ~~~~~~~~~~~~~~A~~~~~~~~~~---~p----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~  278 (365)
                      .+-.+|....+..-...++...+..   .+          ..+.     .++.++..+++.+ ...|++++|++++++++
T Consensus       148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~-----~~lw~~~~lAqhy-d~~g~~~~Al~~Id~aI  221 (517)
T PF12569_consen  148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPS-----TLLWTLYFLAQHY-DYLGDYEKALEYIDKAI  221 (517)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCch-----HHHHHHHHHHHHH-HHhCCHHHHHHHHHHHH
Confidence            5555655444444444444443322   10          1111     1233446668887 48999999999999999


Q ss_pred             hccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          279 IFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       279 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      ...       |. ++++..-|.++...|++.+|.+.++.|..+++.+--+-...+....+.|++++|.+++..-...+
T Consensus       222 ~ht-------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  222 EHT-------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             hcC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            998       55 88999999999999999999999999999999998888899999999999999999987665443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=1.8e-10  Score=97.53  Aligned_cols=297  Identities=14%  Similarity=0.134  Sum_probs=200.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHH
Q 036703           27 IRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR  105 (365)
Q Consensus        27 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  105 (365)
                      ...+...|++++|.+...+.+...|+ ..+...-.-+....+.|+.|..+.++-....- +....+.-+-|+++.+..++
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk~De   97 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNKLDE   97 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcccHHH
Confidence            45566789999999999999999999 66777777777888999999855444322221 22223688889999999999


Q ss_pred             HHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhh
Q 036703          106 ARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE  185 (365)
Q Consensus       106 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  185 (365)
                      |++.++ .+   .+.+    ..+....|+++.   ++|+|++|..+|+..++...+.........+.......       
T Consensus        98 alk~~~-~~---~~~~----~~ll~L~AQvlY---rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------  159 (652)
T KOG2376|consen   98 ALKTLK-GL---DRLD----DKLLELRAQVLY---RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------  159 (652)
T ss_pred             HHHHHh-cc---cccc----hHHHHHHHHHHH---HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------
Confidence            999999 22   3333    567788899999   99999999999999988765543333333333221110       


Q ss_pred             HHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CchhhhHHHHhHHHHHHHHH
Q 036703          186 DAIAGKMRLQYEDGVRKNPM-NYDTWFDYIRLEERVGNQERVREVYERAIANVP------PAEEKRYWQRYIYLWINYAL  258 (365)
Q Consensus       186 ~~~~~~a~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~~~~~~~~~~~~  258 (365)
                           .+ . ..+.+...|. +.+..++.+..+...|++.+|++++++++..+-      +..+...-...-.+...++-
T Consensus       160 -----~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay  232 (652)
T KOG2376|consen  160 -----QV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY  232 (652)
T ss_pred             -----hH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence                 01 1 2333334444 568899999999999999999999999943311      11111111111223444455


Q ss_pred             HHhhccCChhHHHHHHHHHHhccccCCCcc--------------------------------------------------
Q 036703          259 YKEVDAGDLERTRDVYRTLFIFYFSFSPRM--------------------------------------------------  288 (365)
Q Consensus       259 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~--------------------------------------------------  288 (365)
                      .+ ...|+..+|..+|...++..+.+....                                                  
T Consensus       233 Vl-Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~  311 (652)
T KOG2376|consen  233 VL-QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYR  311 (652)
T ss_pred             HH-HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            54 478999999999999998866544322                                                  


Q ss_pred             ----------------------hh--HHHH-HHH-HHHH-HHhCCCccHHHHHHHHHhhCcch-HHHHHHHHHHHhhccc
Q 036703          289 ----------------------EE--RRIF-KKY-IEME-LCLGNIDPCRKLYEKYLEWSPEN-CYAWSKYTELEKSLDE  340 (365)
Q Consensus       289 ----------------------~~--~~~~-~~~-~~~~-~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~  340 (365)
                                            |.  |... -.+ .... .+.....+|.+++....+.+|.+ ..+.+..+.+....|+
T Consensus       312 N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn  391 (652)
T KOG2376|consen  312 NNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN  391 (652)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence                                  11  1111 011 1111 11225677888888888888877 6788889999999999


Q ss_pred             hhHHHHHHHH
Q 036703          341 TERARAIFEL  350 (365)
Q Consensus       341 ~~~A~~~~~~  350 (365)
                      ++.|..++..
T Consensus       392 ~~~A~~il~~  401 (652)
T KOG2376|consen  392 PEVALEILSL  401 (652)
T ss_pred             HHHHHHHHHH
Confidence            9999999983

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=99.51  E-value=1.7e-12  Score=105.55  Aligned_cols=137  Identities=23%  Similarity=0.516  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703           55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKM-GEVDRARNVYECAVEIFLADDHDEAEQLFVAFA  133 (365)
Q Consensus        55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  133 (365)
                      +|..+..+..+.+..+.|+.+|.++++..+.+..+|...|.++... ++.+.|.++|+.+++. +|.+    ..+|..|+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~----~~~~~~Y~   77 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSD----PDFWLEYL   77 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-----HHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCC----HHHHHHHH
Confidence            6788888888888888888888888866666778888888887774 4555588888888888 7777    88888888


Q ss_pred             HHHHhccccchhHHHHHHHHHHhccCCCch-hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH
Q 036703          134 KFEEMGCNCKETDRARCIYKFALDRIPKGR-AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY  207 (365)
Q Consensus       134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~  207 (365)
                      .++.   ..|+.+.|+.+|++++...|... ...+|..++.++...|+.+        ....+++++.+..|.+.
T Consensus        78 ~~l~---~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~--------~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   78 DFLI---KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE--------SVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             HHHH---HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH--------HHHHHHHHHHHHTTTS-
T ss_pred             HHHH---HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHhhhhh
Confidence            8888   88888888888888888777765 5678888888888888754        46667777777777643

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.49  E-value=2.2e-12  Score=93.76  Aligned_cols=115  Identities=17%  Similarity=0.204  Sum_probs=108.6

Q ss_pred             HHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhc
Q 036703           41 QIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA  119 (365)
Q Consensus        41 ~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  119 (365)
                      ..+++++..+|+ ......++..+...|++++|...|++++..+|+++.+|..+|.++...|++++|...++++++. .|
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p   82 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-DP   82 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence            578899999998 5777889999999999999999999999999999999999999999999999999999999999 88


Q ss_pred             CChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      .+    +..+..+|.++.   ..|++++|...|+++++..|.+.
T Consensus        83 ~~----~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        83 DD----PRPYFHAAECLL---ALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             CC----hHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhccccc
Confidence            88    999999999999   99999999999999999999864

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.48  E-value=1.2e-11  Score=94.46  Aligned_cols=168  Identities=14%  Similarity=0.121  Sum_probs=148.2

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 036703            5 GRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCH   83 (365)
Q Consensus         5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~   83 (365)
                      +...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|. ......++....+.|++..|...++++....
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~  130 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA  130 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence            444555666778999999 99999999999999999999998888887 5666679999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703           84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus        84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      |++.++|..+|-+|.+.|+++.|+..|.++++. .|.+    +.+..+++-.+.   -.|+++.|..++..+...-+.+ 
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-~~~~----p~~~nNlgms~~---L~gd~~~A~~lll~a~l~~~ad-  201 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-APNE----PSIANNLGMSLL---LRGDLEDAETLLLPAYLSPAAD-  201 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-ccCC----chhhhhHHHHHH---HcCCHHHHHHHHHHHHhCCCCc-
Confidence            999999999999999999999999999999999 9998    999999999999   9999999999999998766544 


Q ss_pred             hHHHHHHHHHHHHHcCCchh
Q 036703          164 AEDLYRKFLAFEKQYGDREG  183 (365)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~  183 (365)
                       ..+-..++......|++..
T Consensus       202 -~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         202 -SRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             -hHHHHHHHHHHhhcCChHH
Confidence             4566777777777887664

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=99.47  E-value=7.1e-10  Score=91.13  Aligned_cols=330  Identities=14%  Similarity=0.215  Sum_probs=204.6

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhcc---------HHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNE---------VQRA   72 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---------~~~A   72 (365)
                      ++.-+++|++...-.|--+.+|..+..-.+...++.....+|.+++...-+.++|..|...-.+.++         +-+|
T Consensus        58 ~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~a  137 (660)
T COG5107          58 MDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEA  137 (660)
T ss_pred             HHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHHHHHHHHhhCcccccchhhhhHHH
Confidence            5677888999888889889999999988888899999999999998766667788877776655431         1122


Q ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHh---------hcchHHHHHHHHHHHhhhhcCC----------------------
Q 036703           73 RHIFERLVQCHPYNLSAWINFADFEMK---------MGEVDRARNVYECAVEIFLADD----------------------  121 (365)
Q Consensus        73 ~~~~~~~l~~~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~~~~~~~----------------------  121 (365)
                      -++.-.+.-..|.+...|..++.++..         +.+.+..+..|.+++..+..+-                      
T Consensus       138 yefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKf  217 (660)
T COG5107         138 YEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKF  217 (660)
T ss_pred             HHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222233567777777777766542         2345666777777776521111                      


Q ss_pred             --------------------------------------------------------------------------------
Q 036703          122 --------------------------------------------------------------------------------  121 (365)
Q Consensus       122 --------------------------------------------------------------------------------  121 (365)
                                                                                                      
T Consensus       218 vge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y  297 (660)
T COG5107         218 VGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY  297 (660)
T ss_pred             hcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH
Q 036703          122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR  201 (365)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~  201 (365)
                      .+-.+++|+.+..+..   ..++-+.|+.+.++++..+|+     +...+...+....+.+.+... .++....+.+-..
T Consensus       298 ~~~~~evw~dys~Y~~---~isd~q~al~tv~rg~~~sps-----L~~~lse~yel~nd~e~v~~~-fdk~~q~L~r~ys  368 (660)
T COG5107         298 FYYAEEVWFDYSEYLI---GISDKQKALKTVERGIEMSPS-----LTMFLSEYYELVNDEEAVYGC-FDKCTQDLKRKYS  368 (660)
T ss_pred             hhhhHHHHHHHHHHHh---hccHHHHHHHHHHhcccCCCc-----hheeHHHHHhhcccHHHHhhh-HHHHHHHHHHHHh
Confidence            0001222333333333   455566666666666666554     222333333333332221110 0111111111000


Q ss_pred             -----------cCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHH
Q 036703          202 -----------KNPM------------NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL  258 (365)
Q Consensus       202 -----------~~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  258 (365)
                                 .+|.            -.-+|..+...-.+..-.+.|+.+|-++-+.--...+       +.+...+..
T Consensus       369 ~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~-------vyi~~A~~E  441 (660)
T COG5107         369 MGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHH-------VYIYCAFIE  441 (660)
T ss_pred             hhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcc-------eeeeHHHHH
Confidence                       0111            1123344444445566688899999998775322222       445555555


Q ss_pred             HHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc--hHHHHHHHHHHH
Q 036703          259 YKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE--NCYAWSKYTELE  335 (365)
Q Consensus       259 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~  335 (365)
                      ++  ..|++..|-.+|+-++...       |+ +.....+..++...++-+.|+.+|++++..-.+  -..+|-.+...+
T Consensus       442 ~~--~~~d~~ta~~ifelGl~~f-------~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YE  512 (660)
T COG5107         442 YY--ATGDRATAYNIFELGLLKF-------PDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYE  512 (660)
T ss_pred             HH--hcCCcchHHHHHHHHHHhC-------CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Confidence            53  7899999999999999998       55 555667788888999999999999988866333  367999999999


Q ss_pred             hhccchhHHHHHHHHHhcCcC
Q 036703          336 KSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       336 ~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      ...|+...+..+=++.....|
T Consensus       513 s~~G~lN~v~sLe~rf~e~~p  533 (660)
T COG5107         513 SMVGSLNNVYSLEERFRELVP  533 (660)
T ss_pred             HhhcchHHHHhHHHHHHHHcC
Confidence            999999888777777766665

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.46  E-value=8.9e-11  Score=106.09  Aligned_cols=144  Identities=13%  Similarity=0.089  Sum_probs=111.0

Q ss_pred             HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703           79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus        79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      ....+|.++.++..+|.+..+.|.+++|...++.+++. .|++    ..++..++.++.   +.+++++|+..+++++..
T Consensus        78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~----~~a~~~~a~~L~---~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDS----SEAFILMLRGVK---RQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCc----HHHHHHHHHHHH---HhccHHHHHHHHHHHhhc
Confidence            34456777788888888888888888888888888888 7776    778888888888   888888888888888887


Q ss_pred             CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703          159 IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP  238 (365)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  238 (365)
                      .|++  .......+......|..+        +|...|++++..+|++..+|..+|..+...|+.++|...|+++++...
T Consensus       150 ~p~~--~~~~~~~a~~l~~~g~~~--------~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        150 GSSS--AREILLEAKSWDEIGQSE--------QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             CCCC--HHHHHHHHHHHHHhcchH--------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            7776  566666777777777755        577888888887787788888888888888888888888888887755


Q ss_pred             Cc
Q 036703          239 PA  240 (365)
Q Consensus       239 ~~  240 (365)
                      +.
T Consensus       220 ~~  221 (694)
T PRK15179        220 DG  221 (694)
T ss_pred             cc
Confidence            43

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.43  E-value=8.3e-12  Score=107.90  Aligned_cols=219  Identities=11%  Similarity=0.094  Sum_probs=161.1

Q ss_pred             chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhH
Q 036703           86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE  165 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  165 (365)
                      -...-..++..+.+.|=...|..+|++             ...|-..+.+|.   ..|+..+|..+..+-++..|.   +
T Consensus       397 ~Wq~q~~laell~slGitksAl~I~Er-------------lemw~~vi~CY~---~lg~~~kaeei~~q~lek~~d---~  457 (777)
T KOG1128|consen  397 IWQLQRLLAELLLSLGITKSALVIFER-------------LEMWDPVILCYL---LLGQHGKAEEINRQELEKDPD---P  457 (777)
T ss_pred             cchHHHHHHHHHHHcchHHHHHHHHHh-------------HHHHHHHHHHHH---HhcccchHHHHHHHHhcCCCc---c
Confidence            344556778888888888888777775             445666677777   888888888888888885444   3


Q ss_pred             HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhh
Q 036703          166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN-PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKR  244 (365)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  244 (365)
                      .+|-.++++....               .+|+++.+.. -.+..+...++......++++++.+.++..++.+|-..+  
T Consensus       458 ~lyc~LGDv~~d~---------------s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~--  520 (777)
T KOG1128|consen  458 RLYCLLGDVLHDP---------------SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG--  520 (777)
T ss_pred             hhHHHhhhhccCh---------------HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh--
Confidence            4555555543221               2444444431 123344455555555678888888888888888888743  


Q ss_pred             HHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc
Q 036703          245 YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE  323 (365)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  323 (365)
                             .|+.++.+. .+.++++.|.+.|.+++...       |+ .+.|+++...+++.|+-.+|...+.+|++.+-+
T Consensus       521 -------~wf~~G~~A-Lqlek~q~av~aF~rcvtL~-------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~  585 (777)
T KOG1128|consen  521 -------TWFGLGCAA-LQLEKEQAAVKAFHRCVTLE-------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ  585 (777)
T ss_pred             -------HHHhccHHH-HHHhhhHHHHHHHHHHhhcC-------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence                   788887775 68888888888888888888       54 667788888888888888888888888888888


Q ss_pred             hHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          324 NCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       324 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      +..+|.++..+.+..|.+++|.+.|.+.+.+.
T Consensus       586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             CCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            88888888888888888888888888887654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=99.43  E-value=5.1e-12  Score=102.81  Aligned_cols=137  Identities=23%  Similarity=0.483  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLR-YNEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      -+|+.+.++..+.+..+.|+.+|++|.+..+. ..+|..+|.++.. .++.+.|..+|+++++..|.++.+|..+++++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            47999999999999999999999999965554 7899999999888 567777999999999999999999999999999


Q ss_pred             hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703           99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus        99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      ..|+.+.|+.+|++++.. .|.. .....+|..++.++.   ..|+.+.+.++.+++.+..|..
T Consensus        82 ~~~d~~~aR~lfer~i~~-l~~~-~~~~~iw~~~i~fE~---~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen   82 KLNDINNARALFERAISS-LPKE-KQSKKIWKKFIEFES---KYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCT-SSCH-HHCHHHHHHHHHHHH---HHS-HHHHHHHHHHHHHHTTTS
T ss_pred             HhCcHHHHHHHHHHHHHh-cCch-hHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999 8775 224689999999999   9999999999999999988875

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.43  E-value=2e-11  Score=87.11  Aligned_cols=106  Identities=14%  Similarity=0.047  Sum_probs=100.2

Q ss_pred             HHhC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH
Q 036703           13 VTLS-PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW   90 (365)
Q Consensus        13 l~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   90 (365)
                      ..+. |+.-+..+.+|..+...|++++|.++|+-+...+|. ...|..+|-++...|++++|+..|.+++..+|+++...
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            3446 777788999999999999999999999999999999 89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhhhc
Q 036703           91 INFADFEMKMGEVDRARNVYECAVEIFLA  119 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  119 (365)
                      ...|.++...|+.+.|++.|+.++.. ..
T Consensus       107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~-~~  134 (157)
T PRK15363        107 WAAAECYLACDNVCYAIKALKAVVRI-CG  134 (157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH-hc
Confidence            99999999999999999999999998 63

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.42  E-value=5.2e-11  Score=91.06  Aligned_cols=178  Identities=11%  Similarity=0.071  Sum_probs=156.7

Q ss_pred             hHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 036703           37 AGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE  115 (365)
Q Consensus        37 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  115 (365)
                      ..+...+-+....+|+ ..+ ..++..+...|+-+.+..+..++...+|.+..+...+|....+.|++..|+..+.++..
T Consensus        50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~  128 (257)
T COG5010          50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR  128 (257)
T ss_pred             hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence            3466666677778887 566 88888899999999999999999999999999998899999999999999999999999


Q ss_pred             hhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHH
Q 036703          116 IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ  195 (365)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  195 (365)
                      . .|++    +.+|..+|-.|.   +.|+++.|+.-|.++++..|.+  ..+...++..+.-.|+.+        .|..+
T Consensus       129 l-~p~d----~~~~~~lgaald---q~Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~--------~A~~l  190 (257)
T COG5010         129 L-APTD----WEAWNLLGAALD---QLGRFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLE--------DAETL  190 (257)
T ss_pred             c-CCCC----hhhhhHHHHHHH---HccChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHH--------HHHHH
Confidence            9 9998    999999999999   9999999999999999999887  567888888888888865        68899


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703          196 YEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERA  233 (365)
Q Consensus       196 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  233 (365)
                      +..+....+.+..+..+++.+....|++..|.++-.+-
T Consensus       191 ll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         191 LLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence            99999888889999999999999999999998876553

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=99.41  E-value=1.5e-09  Score=95.50  Aligned_cols=334  Identities=17%  Similarity=0.271  Sum_probs=220.5

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHH---hccHHHHHHHHHHHHH
Q 036703            6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLR---YNEVQRARHIFERLVQ   81 (365)
Q Consensus         6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~---~~~~~~A~~~~~~~l~   81 (365)
                      +..++.-+.+++.+......|..+....|++++.+..-..+.++.|. +.+|..++.-...   .++-..+...|++++.
T Consensus        99 i~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~  178 (881)
T KOG0128|consen   99 IRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG  178 (881)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc
Confidence            34556666778888889999999999999999988888888888898 7899998865443   3677888999999997


Q ss_pred             hCCcchHHHHHHHHHHHhh-------cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH---HHHHhccccchhHHHHHH
Q 036703           82 CHPYNLSAWINFADFEMKM-------GEVDRARNVYECAVEIFLADDHDEAEQLFVAFA---KFEEMGCNCKETDRARCI  151 (365)
Q Consensus        82 ~~p~~~~~~~~~~~~~~~~-------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~A~~~  151 (365)
                      ..- ++.+|..++.+....       ++++..+.+|++++.. .+........+|..+.   ..+.   ..-..++...+
T Consensus       179 dy~-~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s-~g~~~t~G~~~we~~~E~e~~~l---~n~~~~qv~a~  253 (881)
T KOG0128|consen  179 DYN-SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRS-LGSHITEGAAIWEMYREFEVTYL---CNVEQRQVIAL  253 (881)
T ss_pred             ccc-cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhh-hhhhhcccHHHHHHHHHHHHHHH---HhHHHHHHHHH
Confidence            766 899999999887764       4578889999999988 5443222244554444   3344   55556778888


Q ss_pred             HHHHhccCCCchhHHHHHHHHHH-----HHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHH
Q 036703          152 YKFALDRIPKGRAEDLYRKFLAF-----EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERV  226 (365)
Q Consensus       152 ~~~~l~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A  226 (365)
                      +.+.+... -+.....|.-.-..     .....+.+.. -....+-+..+++.++..|.....|..++++....|+....
T Consensus       254 ~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a-~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri  331 (881)
T KOG0128|consen  254 FVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDA-LKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRI  331 (881)
T ss_pred             HHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHH
Confidence            88777643 22111111111111     0000011000 00012344556677777777778899999999999999999


Q ss_pred             HHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc------------------
Q 036703          227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM------------------  288 (365)
Q Consensus       227 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~------------------  288 (365)
                      ...+++++...+.+..         .|+.|+.+.....+-.+.+...+-++++.+|-...+|                  
T Consensus       332 ~l~~eR~~~E~~~~~~---------~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~  402 (881)
T KOG0128|consen  332 QLIEERAVAEMVLDRA---------LWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIV  402 (881)
T ss_pred             HHHHHHHHHhccccHH---------HHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHH
Confidence            9999999888776643         4444444332222222222222333333222222222                  


Q ss_pred             --------------------------------------------------------hhHHHHHHHHHHHH-HhCCCccHH
Q 036703          289 --------------------------------------------------------EERRIFKKYIEMEL-CLGNIDPCR  311 (365)
Q Consensus       289 --------------------------------------------------------~~~~~~~~~~~~~~-~~~~~~~A~  311 (365)
                                                                              +...+...++.++. .+++.+.|+
T Consensus       403 ~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R  482 (881)
T KOG0128|consen  403 QNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAR  482 (881)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhh
Confidence                                                                    23456666777776 468889999


Q ss_pred             HHHHHHHhhCcchHH-HHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          312 KLYEKYLEWSPENCY-AWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       312 ~~~~~al~~~p~~~~-~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      .+++..+...-.+.. .|+.+++++...|+...++.++++|....
T Consensus       483 ~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~  527 (881)
T KOG0128|consen  483 EIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQV  527 (881)
T ss_pred             HhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcC
Confidence            999888877655665 89999999999999999999888887543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.41  E-value=3.4e-12  Score=99.32  Aligned_cols=94  Identities=14%  Similarity=0.081  Sum_probs=50.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHH
Q 036703           27 IRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR  105 (365)
Q Consensus        27 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  105 (365)
                      |.-....++|.+|+..|.+||+++|. ...+...+..|.+.|.++.|++-.++++.++|....+|.++|..+..+|++++
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence            44444555555555555555555555 34444455555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHhhhhcCC
Q 036703          106 ARNVYECAVEIFLADD  121 (365)
Q Consensus       106 A~~~~~~a~~~~~~~~  121 (365)
                      |++.|+++++. .|++
T Consensus       168 A~~aykKaLel-dP~N  182 (304)
T KOG0553|consen  168 AIEAYKKALEL-DPDN  182 (304)
T ss_pred             HHHHHHhhhcc-CCCc
Confidence            55555555555 5554

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=99.41  E-value=5.1e-09  Score=87.33  Aligned_cols=95  Identities=22%  Similarity=0.430  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc-hHHHHHHHHHHHh
Q 036703           38 GARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE-VDRARNVYECAVE  115 (365)
Q Consensus        38 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~  115 (365)
                      .-..+|.+|+...+. ..+|..++.+..+.+.+.+...+|.+++..+|+++++|+.-|..+...+. .+.|+.+|.++++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            455688999988884 89999999999999999999999999999999999999999999998765 9999999999999


Q ss_pred             hhhcCChhhHHHHHHHHHHHHH
Q 036703          116 IFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      . +|++    +.+|..+-++..
T Consensus       169 ~-npds----p~Lw~eyfrmEL  185 (568)
T KOG2396|consen  169 F-NPDS----PKLWKEYFRMEL  185 (568)
T ss_pred             c-CCCC----hHHHHHHHHHHH
Confidence            9 9888    999999988776

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.40  E-value=2.8e-11  Score=98.36  Aligned_cols=227  Identities=12%  Similarity=0.028  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--cchHHHHHHHHHHHh
Q 036703           22 LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHP--YNLSAWINFADFEMK   99 (365)
Q Consensus        22 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~   99 (365)
                      ......+.+..+|+++.++.-....  ..|...+...++.++...++.+.+...++..+....  .++.+....|.++..
T Consensus        37 ~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~  114 (290)
T PF04733_consen   37 RDFYQYRSYIALGQYDSVLSEIKKS--SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH  114 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHS-TT--SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCChhHHHHHhccC--CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            3445556666666655444333221  133344444555554443444444444444332221  233444444555555


Q ss_pred             hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcC
Q 036703          100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG  179 (365)
Q Consensus       100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  179 (365)
                      .|++++|++++++. .     +    .+.......++.   ..++++.|.+.++++.+...+.....+...++.+.....
T Consensus       115 ~~~~~~AL~~l~~~-~-----~----lE~~al~Vqi~L---~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  115 EGDYEEALKLLHKG-G-----S----LELLALAVQILL---KMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             CCHHHHHHCCCTTT-T-----C----HHHHHHHHHHHH---HTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTT
T ss_pred             cCCHHHHHHHHHcc-C-----c----ccHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCch
Confidence            66666666555443 1     1    444444555666   666666666666666555544433333333333332222


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHH
Q 036703          180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY  259 (365)
Q Consensus       180 ~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  259 (365)
                      ...        .|.-+|+...+..|.++.++..++.+....|++++|...+++++..+|.+++         ++.+.+.+
T Consensus       182 ~~~--------~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d---------~LaNliv~  244 (290)
T PF04733_consen  182 KYQ--------DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD---------TLANLIVC  244 (290)
T ss_dssp             CCC--------HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH---------HHHHHHHH
T ss_pred             hHH--------HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH---------HHHHHHHH
Confidence            222        4666666655555566666666666666666666666666666666666543         34444444


Q ss_pred             HhhccCCh-hHHHHHHHHHHhcc
Q 036703          260 KEVDAGDL-ERTRDVYRTLFIFY  281 (365)
Q Consensus       260 ~~~~~~~~-~~a~~~~~~a~~~~  281 (365)
                      . ...|+. +.+.+.+.+....+
T Consensus       245 ~-~~~gk~~~~~~~~l~qL~~~~  266 (290)
T PF04733_consen  245 S-LHLGKPTEAAERYLSQLKQSN  266 (290)
T ss_dssp             H-HHTT-TCHHHHHHHHHCHHHT
T ss_pred             H-HHhCCChhHHHHHHHHHHHhC
Confidence            3 244444 34444444444444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.38  E-value=4.1e-11  Score=97.36  Aligned_cols=254  Identities=9%  Similarity=0.046  Sum_probs=106.6

Q ss_pred             HHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHH
Q 036703           30 EENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRAR  107 (365)
Q Consensus        30 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~  107 (365)
                      ..-.|++.+++.-++ ....+|.  ........+.+..+|+++.++.-...   ..+........++.++...++.+.++
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l   86 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESAL   86 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred             HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHH
Confidence            444567776665555 2233333  33444555666666665544333222   22224455555565555444444444


Q ss_pred             HHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHH
Q 036703          108 NVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDA  187 (365)
Q Consensus       108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (365)
                      .-++..+....+.   .++.+....|.++.   ..|++++|++++++.     .  ..+.....+.++...++.+     
T Consensus        87 ~~l~~~~~~~~~~---~~~~~~~~~A~i~~---~~~~~~~AL~~l~~~-----~--~lE~~al~Vqi~L~~~R~d-----  148 (290)
T PF04733_consen   87 EELKELLADQAGE---SNEIVQLLAATILF---HEGDYEEALKLLHKG-----G--SLELLALAVQILLKMNRPD-----  148 (290)
T ss_dssp             HHHHHCCCTS------CHHHHHHHHHHHHC---CCCHHHHHHCCCTTT-----T--CHHHHHHHHHHHHHTT-HH-----
T ss_pred             HHHHHHHHhcccc---ccHHHHHHHHHHHH---HcCCHHHHHHHHHcc-----C--cccHHHHHHHHHHHcCCHH-----
Confidence            4444433220111   12334444455555   666666666655432     1  1233333344444444433     


Q ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccC
Q 036703          188 IAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV--GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAG  265 (365)
Q Consensus       188 ~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (365)
                         .|.+.++.+-+.+.++.-+-..-+.+....  +++.+|.-+|++.....|.++.         +....+.+. +..|
T Consensus       149 ---lA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~---------~lng~A~~~-l~~~  215 (290)
T PF04733_consen  149 ---LAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK---------LLNGLAVCH-LQLG  215 (290)
T ss_dssp             ---HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH---------HHHHHHHHH-HHCT
T ss_pred             ---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH---------HHHHHHHHH-HHhC
Confidence               344444444444333322222222222222  2345555555554444433321         333333333 3455


Q ss_pred             ChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCC-ccHHHHHHHHHhhCcchH
Q 036703          266 DLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNI-DPCRKLYEKYLEWSPENC  325 (365)
Q Consensus       266 ~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~  325 (365)
                      ++++|.+.++.++..+       |. +++..+++.+....|+. +.+.+++.++...+|+++
T Consensus       216 ~~~eAe~~L~~al~~~-------~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~  270 (290)
T PF04733_consen  216 HYEEAEELLEEALEKD-------PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP  270 (290)
T ss_dssp             -HHHHHHHHHHHCCC--------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred             CHHHHHHHHHHHHHhc-------cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence            5555555555554443       22 44444444444444444 333444444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=3.4e-09  Score=84.64  Aligned_cols=329  Identities=12%  Similarity=0.012  Sum_probs=200.8

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh--------------hCCC-------------h
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMH--------------WMPD-------------H   53 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--------------~~p~-------------~   53 (365)
                      +|++|...|+-+...+.-+..+|..++-+..-.|.+.+|..+-.++-+              ++.+             .
T Consensus        72 dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~  151 (557)
T KOG3785|consen   72 DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL  151 (557)
T ss_pred             cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH
Confidence            588999999998887666689999999999999999999887655522              1111             1


Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh----------
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD----------  123 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------  123 (365)
                      +--+.++.+....-.+++|+.+|.+.+..+|.-..+-..++.+|.+..-++-+.+++.--++. .|++..          
T Consensus       152 EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~f  230 (557)
T KOG3785|consen  152 EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLF  230 (557)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHh
Confidence            223455666666678999999999999999988888888999999999999999999988888 887600          


Q ss_pred             ----------------------------------------------------hHHHHHHHHHHHHHhccccchhHHHHHH
Q 036703          124 ----------------------------------------------------EAEQLFVAFAKFEEMGCNCKETDRARCI  151 (365)
Q Consensus       124 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~  151 (365)
                                                                          .-|++-.+++-+|.   ++++..+|..+
T Consensus       231 Rl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL---~q~dVqeA~~L  307 (557)
T KOG3785|consen  231 RLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYL---NQNDVQEAISL  307 (557)
T ss_pred             hhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeec---ccccHHHHHHH
Confidence                                                                00111223333333   67777777777


Q ss_pred             HHHHhccCCCchhHHHHHHH--HHHHHHcCCchhhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCHHHHH
Q 036703          152 YKFALDRIPKGRAEDLYRKF--LAFEKQYGDREGIEDAIAGKMRLQYEDGVRK--NPMNYDTWFDYIRLEERVGNQERVR  227 (365)
Q Consensus       152 ~~~~l~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~  227 (365)
                      .+..   .|..+..-+....  +.+-...|..+.     ++.|...|+-+=..  ..+.......++....-..++++.+
T Consensus       308 ~Kdl---~PttP~EyilKgvv~aalGQe~gSreH-----lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl  379 (557)
T KOG3785|consen  308 CKDL---DPTTPYEYILKGVVFAALGQETGSREH-----LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVL  379 (557)
T ss_pred             Hhhc---CCCChHHHHHHHHHHHHhhhhcCcHHH-----HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHH
Confidence            6653   3433212222222  122223333321     22333333221110  0111223444555555556677776


Q ss_pred             HHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCC
Q 036703          228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNI  307 (365)
Q Consensus       228 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (365)
                      .++...-.-.-++..         +.+++++.. ...|++.+|.++|-+.-.....     .+.-.-..++.++...+..
T Consensus       380 ~YlnSi~sYF~NdD~---------Fn~N~AQAk-~atgny~eaEelf~~is~~~ik-----n~~~Y~s~LArCyi~nkkP  444 (557)
T KOG3785|consen  380 TYLNSIESYFTNDDD---------FNLNLAQAK-LATGNYVEAEELFIRISGPEIK-----NKILYKSMLARCYIRNKKP  444 (557)
T ss_pred             HHHHHHHHHhcCcch---------hhhHHHHHH-HHhcChHHHHHHHhhhcChhhh-----hhHHHHHHHHHHHHhcCCc
Confidence            666555444444332         566777776 5788888888887765432100     1122334567788888888


Q ss_pred             ccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCC
Q 036703          308 DPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL  357 (365)
Q Consensus       308 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  357 (365)
                      +.|=.++-+.- ...+...+....++.+...|.+--|.+.|...-.++|.
T Consensus       445 ~lAW~~~lk~~-t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~  493 (557)
T KOG3785|consen  445 QLAWDMMLKTN-TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT  493 (557)
T ss_pred             hHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence            87766664431 11123345555666777777777777777766666663

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.36  E-value=7.7e-09  Score=99.62  Aligned_cols=320  Identities=12%  Similarity=0.028  Sum_probs=217.2

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC--------C--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch--
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMP--------D--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL--   87 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--------~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--   87 (365)
                      +.+....+.+....|++++|...+.++....+        .  .......+.++...|+++.|...+++++...|...  
T Consensus       409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~  488 (903)
T PRK04841        409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY  488 (903)
T ss_pred             cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence            44456667777889999999999998875422        1  12233455677789999999999999998655322  


Q ss_pred             ---HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703           88 ---SAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus        88 ---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                         .....++..+...|++++|...+++++.. ....  .......+..++.++.   ..|++++|...+++++......
T Consensus       489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~-~~~~g~~~~~~~~~~~la~~~~---~~G~~~~A~~~~~~al~~~~~~  564 (903)
T PRK04841        489 SRIVATSVLGEVHHCKGELARALAMMQQTEQM-ARQHDVYHYALWSLLQQSEILF---AQGFLQAAYETQEKAFQLIEEQ  564 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HhhhcchHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHh
Confidence               34566778888899999999999999876 4322  0111345567788888   9999999999999988753211


Q ss_pred             -----h-hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC----C-CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 036703          163 -----R-AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP----M-NYDTWFDYIRLEERVGNQERVREVYE  231 (365)
Q Consensus       163 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p----~-~~~~~~~~~~~~~~~~~~~~A~~~~~  231 (365)
                           . ....+...+......|+.+        .|...+++++....    . ....+..++.+....|+++.|...++
T Consensus       565 ~~~~~~~~~~~~~~la~~~~~~G~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~  636 (903)
T PRK04841        565 HLEQLPMHEFLLRIRAQLLWEWARLD--------EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN  636 (903)
T ss_pred             ccccccHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                 0 1223334455666678765        57777777766422    1 23455667888899999999999999


Q ss_pred             HHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHH
Q 036703          232 RAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCR  311 (365)
Q Consensus       232 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  311 (365)
                      ++....+.......+.... .... ...+ ...|+.+.|...+.......+..  .+.....+..++.++...|++++|.
T Consensus       637 ~a~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~a~~~~~~g~~~~A~  711 (903)
T PRK04841        637 RLENLLGNGRYHSDWIANA-DKVR-LIYW-QMTGDKEAAANWLRQAPKPEFAN--NHFLQGQWRNIARAQILLGQFDEAE  711 (903)
T ss_pred             HHHHHHhcccccHhHhhHH-HHHH-HHHH-HHCCCHHHHHHHHHhcCCCCCcc--chhHHHHHHHHHHHHHHcCCHHHHH
Confidence            9976533221000000000 0011 1222 35788999988877765432111  0001223567788888999999999


Q ss_pred             HHHHHHHhhC------cchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          312 KLYEKYLEWS------PENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       312 ~~~~~al~~~------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      ..+++++...      +....+...++..+...|+.++|...+.++++...
T Consensus       712 ~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        712 IILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            9999998762      22345778889999999999999999999998764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.33  E-value=7.4e-10  Score=92.09  Aligned_cols=154  Identities=13%  Similarity=0.047  Sum_probs=131.5

Q ss_pred             CC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703           51 PD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF  129 (365)
Q Consensus        51 p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  129 (365)
                      |. ...|+..+..+...|+++.|+..+...+...|+|+..+...++++.+.|+.++|.+.+++++.. .|..    +.++
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~----~~l~  377 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNS----PLLQ  377 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCc----cHHH
Confidence            45 6788888888888999999999999999999999999999999999999999999999999999 8887    8899


Q ss_pred             HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703          130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT  209 (365)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~  209 (365)
                      +++|+.+.   ..|++.+|+..+++.+..+|++  ...|..+++.+...|+..                         ..
T Consensus       378 ~~~a~all---~~g~~~eai~~L~~~~~~~p~d--p~~w~~LAqay~~~g~~~-------------------------~a  427 (484)
T COG4783         378 LNLAQALL---KGGKPQEAIRILNRYLFNDPED--PNGWDLLAQAYAELGNRA-------------------------EA  427 (484)
T ss_pred             HHHHHHHH---hcCChHHHHHHHHHHhhcCCCC--chHHHHHHHHHHHhCchH-------------------------HH
Confidence            99999999   9999999999999999988887  678888888887777633                         34


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 036703          210 WFDYIRLEERVGNQERVREVYERAIANVPP  239 (365)
Q Consensus       210 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  239 (365)
                      ....++.+...|+++.|+..+.++.+....
T Consensus       428 ~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~  457 (484)
T COG4783         428 LLARAEGYALAGRLEQAIIFLMRASQQVKL  457 (484)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhccC
Confidence            455667777889999999999988887633

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=2e-10  Score=90.25  Aligned_cols=119  Identities=16%  Similarity=0.192  Sum_probs=109.1

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc---cHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN---EVQRARHIFE   77 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~---~~~~A~~~~~   77 (365)
                      .+....-++.-++.+|++..-|..+|.++..+|+...|...|.+++++.|+ +..+..++..+..+.   ...++..+|+
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            345667788889999999999999999999999999999999999999999 899999998776543   4678999999


Q ss_pred             HHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           78 RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        78 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      +++..+|+++.....+|.-+...|++.+|...++.+++. .|.+
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~-lp~~  260 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL-LPAD  260 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCC
Confidence            999999999999999999999999999999999999999 8876

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=1e-07  Score=74.62  Aligned_cols=153  Identities=14%  Similarity=0.046  Sum_probs=118.7

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHH-
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFER-   78 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~-   78 (365)
                      +|+.|++++..-.+.+|.+-.....+|.||....++..|...|++.-...|. ...-+-.+....+.+.+..|..+... 
T Consensus        25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~  104 (459)
T KOG4340|consen   25 RYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLL  104 (459)
T ss_pred             hHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence            3678899999888999998888999999999999999999999999999998 44444455555555555555544332 


Q ss_pred             ---------------H--------------HHhCC--cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHH
Q 036703           79 ---------------L--------------VQCHP--YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQ  127 (365)
Q Consensus        79 ---------------~--------------l~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  127 (365)
                                     +              ++.-|  ++....+..|-+..+.|+++.|.+-|+.+++. .+-.    +-
T Consensus       105 ~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-sGyq----pl  179 (459)
T KOG4340|consen  105 LDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-SGYQ----PL  179 (459)
T ss_pred             cCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh-cCCC----ch
Confidence                           1              12233  34566777788888999999999999999998 7776    88


Q ss_pred             HHHHHHHHHHhccccchhHHHHHHHHH----HhccCCC
Q 036703          128 LFVAFAKFEEMGCNCKETDRARCIYKF----ALDRIPK  161 (365)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~A~~~~~~----~l~~~p~  161 (365)
                      +-++++..+.   +.|+++.|+++...    +++..|.
T Consensus       180 lAYniALaHy---~~~qyasALk~iSEIieRG~r~HPE  214 (459)
T KOG4340|consen  180 LAYNLALAHY---SSRQYASALKHISEIIERGIRQHPE  214 (459)
T ss_pred             hHHHHHHHHH---hhhhHHHHHHHHHHHHHhhhhcCCc
Confidence            8888999999   99999999887654    4455554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.32  E-value=1.3e-08  Score=98.11  Aligned_cols=303  Identities=13%  Similarity=0.037  Sum_probs=205.9

Q ss_pred             hhhHHHHHHHHHHhCCC---------chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh------HHHHHHHHHHHHh
Q 036703            2 IDHGRNAWDRVVTLSPR---------VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH------EGWLSYIKFKLRY   66 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~   66 (365)
                      +++|...++.+....+.         ...+...++.++...|+++.|...+++++...|..      ..+..++..+...
T Consensus       425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~  504 (903)
T PRK04841        425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK  504 (903)
T ss_pred             HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence            56777777777654322         12334456777888999999999999999865541      2445567778889


Q ss_pred             ccHHHHHHHHHHHHHhCCc------chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCCh----hhHHHHHHHHHHHH
Q 036703           67 NEVQRARHIFERLVQCHPY------NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH----DEAEQLFVAFAKFE  136 (365)
Q Consensus        67 ~~~~~A~~~~~~~l~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~  136 (365)
                      |++++|...+++++.....      .......++.++...|+++.|...+++++.. .....    .....++..++.++
T Consensus       505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~la~~~  583 (903)
T PRK04841        505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL-IEEQHLEQLPMHEFLLRIRAQLL  583 (903)
T ss_pred             CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHhccccccHHHHHHHHHHHHH
Confidence            9999999999999875332      1234567788899999999999999999886 33210    11123455678888


Q ss_pred             HhccccchhHHHHHHHHHHhccCCC---chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC---HHHH
Q 036703          137 EMGCNCKETDRARCIYKFALDRIPK---GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN---YDTW  210 (365)
Q Consensus       137 ~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~---~~~~  210 (365)
                      .   ..|++++|...+.+++.....   ......+...+.+....|+..        .|...++++....+..   ....
T Consensus       584 ~---~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~--------~A~~~l~~a~~~~~~~~~~~~~~  652 (903)
T PRK04841        584 W---EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLD--------NARRYLNRLENLLGNGRYHSDWI  652 (903)
T ss_pred             H---HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHhcccccHhHh
Confidence            8   899999999999998875332   112334444566777888865        5777777776542221   1111


Q ss_pred             HH----HHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC
Q 036703          211 FD----YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP  286 (365)
Q Consensus       211 ~~----~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~  286 (365)
                      ..    ....+...|+.+.|...+.......+.....     ....+...+..+ ...|++++|...+++++........
T Consensus       653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~-----~~~~~~~~a~~~-~~~g~~~~A~~~l~~al~~~~~~g~  726 (903)
T PRK04841        653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHF-----LQGQWRNIARAQ-ILLGQFDEAEIILEELNENARSLRL  726 (903)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchh-----HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCc
Confidence            11    1233455789999999987766533222110     011344566665 5889999999999999887433222


Q ss_pred             cchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc
Q 036703          287 RMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE  323 (365)
Q Consensus       287 ~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  323 (365)
                      . .. ......++..+...|+.++|...+.++++....
T Consensus       727 ~-~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        727 M-SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             h-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            1 12 456778889999999999999999999998643

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.31  E-value=1.5e-10  Score=82.62  Aligned_cols=105  Identities=16%  Similarity=0.110  Sum_probs=97.6

Q ss_pred             hhC-CC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhH
Q 036703           48 HWM-PD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA  125 (365)
Q Consensus        48 ~~~-p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  125 (365)
                      .+. ++ -.....++......|++++|..+|+-+...+|.+...|+.+|.++...|++++|+..|.++... .|++    
T Consensus        28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~~dd----  102 (157)
T PRK15363         28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-KIDA----  102 (157)
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCC----
Confidence            444 44 4667888999999999999999999999999999999999999999999999999999999999 9988    


Q ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703          126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      +..+...|.++.   ..|+.+.|++.|+.++..+.
T Consensus       103 p~~~~~ag~c~L---~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        103 PQAPWAAAECYL---ACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             chHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhc
Confidence            999999999999   99999999999999998764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.30  E-value=8.4e-10  Score=91.76  Aligned_cols=134  Identities=12%  Similarity=-0.029  Sum_probs=123.8

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA   94 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~   94 (365)
                      .|....++++.+..+...|+++.|+..+...+...|+ +-.|...++++...|+..+|.+.+++++..+|+.+-+++.+|
T Consensus       302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            3777889999999999999999999999999999999 677778889999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703           95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus        95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      +.+.+.|++.+|+..+++.+.. .|++    +..|..+++.|.   .+|+..++...+.....
T Consensus       382 ~all~~g~~~eai~~L~~~~~~-~p~d----p~~w~~LAqay~---~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFN-DPED----PNGWDLLAQAYA---ELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhc-CCCC----chHHHHHHHHHH---HhCchHHHHHHHHHHHH
Confidence            9999999999999999999999 9998    999999999999   99988888777665554

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.26  E-value=1.7e-10  Score=90.05  Aligned_cols=113  Identities=18%  Similarity=0.124  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703           57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE  136 (365)
Q Consensus        57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  136 (365)
                      ..-|.-..+.++|++|+..|.+||+++|.++..+...+..|.+.|.++.|++-.+.++.. .|..    ...|..+|..+
T Consensus        85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-Dp~y----skay~RLG~A~  159 (304)
T KOG0553|consen   85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-DPHY----SKAYGRLGLAY  159 (304)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-ChHH----HHHHHHHHHHH
Confidence            344555667789999999999999999999999999999999999999999999999999 7776    99999999999


Q ss_pred             HhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcC
Q 036703          137 EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG  179 (365)
Q Consensus       137 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  179 (365)
                      .   .+|++++|++.|+++|.+.|++.  .++..+-......+
T Consensus       160 ~---~~gk~~~A~~aykKaLeldP~Ne--~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  160 L---ALGKYEEAIEAYKKALELDPDNE--SYKSNLKIAEQKLN  197 (304)
T ss_pred             H---ccCcHHHHHHHHHhhhccCCCcH--HHHHHHHHHHHHhc
Confidence            9   99999999999999999999984  44444444443333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.25  E-value=1.7e-10  Score=97.32  Aligned_cols=108  Identities=12%  Similarity=0.129  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG  101 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  101 (365)
                      +...|......|++++|+..|.++++.+|+ ..+|..++.++...|++++|+..+++++..+|+++.+++.+|.++...|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            445567777788888888888888888887 6778888888888888888888888888888888888888888888888


Q ss_pred             chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 036703          102 EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF  135 (365)
Q Consensus       102 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  135 (365)
                      ++++|+..|+++++. .|.+    ..+...++.+
T Consensus        85 ~~~eA~~~~~~al~l-~P~~----~~~~~~l~~~  113 (356)
T PLN03088         85 EYQTAKAALEKGASL-APGD----SRFTKLIKEC  113 (356)
T ss_pred             CHHHHHHHHHHHHHh-CCCC----HHHHHHHHHH
Confidence            888888888888888 7776    4444444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.24  E-value=4e-10  Score=95.06  Aligned_cols=100  Identities=15%  Similarity=0.177  Sum_probs=93.8

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      +++.|+..|+++++.+|+++.+|..+|.++...|++++|+..+++++.++|+ ..+|..+|.++...|+++.|+..|+++
T Consensus        17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~a   96 (356)
T PLN03088         17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKG   96 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhh
Q 036703           80 VQCHPYNLSAWINFADFEMKM  100 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~  100 (365)
                      +..+|+++.+...++.+..+.
T Consensus        97 l~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         97 ASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHhCCCCHHHHHHHHHHHHHH
Confidence            999999998888777765554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.22  E-value=6.7e-09  Score=80.60  Aligned_cols=158  Identities=15%  Similarity=0.171  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch---HHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL---SAWIN   92 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~   92 (365)
                      +..++..|......|++.+|+..|++++...|.    ..+.+.++..+...|+++.|+..+++.++.+|+++   .++..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            567888999999999999999999999999997    67889999999999999999999999999999865   45666


Q ss_pred             HHHHHHhh-----------cchHHHHHHHHHHHhhhhcCChhhHH--------------HHHHHHHHHHHhccccchhHH
Q 036703           93 FADFEMKM-----------GEVDRARNVYECAVEIFLADDHDEAE--------------QLFVAFAKFEEMGCNCKETDR  147 (365)
Q Consensus        93 ~~~~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~  147 (365)
                      .|.++...           +...+|+..|+..++. .|++ +-..              .--+..|.+|.   +.|.+..
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~-yP~S-~y~~~A~~~l~~l~~~la~~e~~ia~~Y~---~~~~y~a  159 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR-YPNS-EYAEEAKKRLAELRNRLAEHELYIARFYY---KRGKYKA  159 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH--TTS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CTT-HHH
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH-CcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcccHHH
Confidence            66665443           3456899999999999 9987 2211              11245678888   9999999


Q ss_pred             HHHHHHHHhccCCCchh-HHHHHHHHHHHHHcCCch
Q 036703          148 ARCIYKFALDRIPKGRA-EDLYRKFLAFEKQYGDRE  182 (365)
Q Consensus       148 A~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~  182 (365)
                      |..-++.+++..|+... ......++..+...|...
T Consensus       160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            99999999999999763 345556666777777644

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.22  E-value=7.6e-09  Score=84.80  Aligned_cols=233  Identities=17%  Similarity=0.198  Sum_probs=149.1

Q ss_pred             ChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------cchHHHHHHHHHHHhhcchHHHHH
Q 036703           35 NVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHP------YNLSAWINFADFEMKMGEVDRARN  108 (365)
Q Consensus        35 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~~~~~~A~~  108 (365)
                      +++.|...|+++             |..+...|++++|...|.++....-      .....+...+.++.+. ++++|++
T Consensus        30 ~~e~Aa~~y~~A-------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~   95 (282)
T PF14938_consen   30 DYEEAADLYEKA-------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIE   95 (282)
T ss_dssp             HHHHHHHHHHHH-------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHH
T ss_pred             CHHHHHHHHHHH-------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHH
Confidence            566677777666             6667777777788887777765331      1234556666666555 8999999


Q ss_pred             HHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhh
Q 036703          109 VYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNC-KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE  185 (365)
Q Consensus       109 ~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  185 (365)
                      +|++++.. .-..  +......+..+|.++.   .. |++++|++.|++|+....                ..+...   
T Consensus        96 ~~~~A~~~-y~~~G~~~~aA~~~~~lA~~ye---~~~~d~e~Ai~~Y~~A~~~y~----------------~e~~~~---  152 (282)
T PF14938_consen   96 CYEKAIEI-YREAGRFSQAAKCLKELAEIYE---EQLGDYEKAIEYYQKAAELYE----------------QEGSPH---  152 (282)
T ss_dssp             HHHHHHHH-HHHCT-HHHHHHHHHHHHHHHC---CTT--HHHHHHHHHHHHHHHH----------------HTT-HH---
T ss_pred             HHHHHHHH-HHhcCcHHHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHH----------------HCCChh---
Confidence            99999886 4322  2334677888999998   88 899999999999875322                222111   


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccC
Q 036703          186 DAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAG  265 (365)
Q Consensus       186 ~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (365)
                           .+              ...+..++.++...|++++|.+.|+++....-.++..+. . .-..++..+.+. +..|
T Consensus       153 -----~a--------------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~-~-~~~~~l~a~l~~-L~~~  210 (282)
T PF14938_consen  153 -----SA--------------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY-S-AKEYFLKAILCH-LAMG  210 (282)
T ss_dssp             -----HH--------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH-H-HHHHHHHHHHHH-HHTT
T ss_pred             -----hH--------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch-h-HHHHHHHHHHHH-HHcC
Confidence                 11              144556788899999999999999999886544321110 0 011333334443 5789


Q ss_pred             ChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH--hCCCccHHHHHHHHHhhCcchHHH
Q 036703          266 DLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC--LGNIDPCRKLYEKYLEWSPENCYA  327 (365)
Q Consensus       266 ~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~  327 (365)
                      ++..|...+++.....|.+..- ....+...++..+..  ...++.|..-|++...++|-...+
T Consensus       211 D~v~A~~~~~~~~~~~~~F~~s-~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~  273 (282)
T PF14938_consen  211 DYVAARKALERYCSQDPSFASS-REYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKM  273 (282)
T ss_dssp             -HHHHHHHHHHHGTTSTTSTTS-HHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHH
Confidence            9999999999999998776542 336666666666653  345777888888877777644443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.21  E-value=6.9e-10  Score=81.29  Aligned_cols=112  Identities=16%  Similarity=0.186  Sum_probs=97.2

Q ss_pred             hhhHHHHHHHHHHhCCCc---hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRV---DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARH   74 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~   74 (365)
                      ...+...++..+..+|++   ..+.+.+|.++...|++++|...|+.++...|+    ..+++.++.++...|++++|..
T Consensus        27 ~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~  106 (145)
T PF09976_consen   27 PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALA  106 (145)
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            456677889999999998   566888999999999999999999999998776    3578889999999999999999


Q ss_pred             HHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703           75 IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV  114 (365)
Q Consensus        75 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  114 (365)
                      .++. +...+..+..+...|+++...|+.++|+..|++++
T Consensus       107 ~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  107 TLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            9976 34445577889999999999999999999999875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.20  E-value=6.4e-09  Score=82.60  Aligned_cols=160  Identities=11%  Similarity=0.000  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch---HHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL---SAWIN   92 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~   92 (365)
                      +..++..|......|++++|+..|++++...|.    ..+...+|..+.+.++++.|+..+++.++.+|+++   .++..
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~  111 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM  111 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence            344555555555566666666666666665555    22344555555566666666666666666555543   23344


Q ss_pred             HHHHHHhhc------------------chHHHHHHHHHHHhhhhcCCh-------------hhHHHHHHHHHHHHHhccc
Q 036703           93 FADFEMKMG------------------EVDRARNVYECAVEIFLADDH-------------DEAEQLFVAFAKFEEMGCN  141 (365)
Q Consensus        93 ~~~~~~~~~------------------~~~~A~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~  141 (365)
                      .|.+....+                  ...+|++.|++.++. .|++.             ..-..--+..|.+|.   +
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~-yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~---~  187 (243)
T PRK10866        112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG-YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT---K  187 (243)
T ss_pred             HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH-CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            443321111                  123455556666666 55540             000111245555565   5


Q ss_pred             cchhHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHHHcCCchh
Q 036703          142 CKETDRARCIYKFALDR-IPKGRAEDLYRKFLAFEKQYGDREG  183 (365)
Q Consensus       142 ~~~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~~~  183 (365)
                      .|.+..|+.-++.+++. -......+....++..+...|..+.
T Consensus       188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~  230 (243)
T PRK10866        188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ  230 (243)
T ss_pred             cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence            66666666666555541 1111113344444444445554443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.20  E-value=1.1e-09  Score=77.56  Aligned_cols=101  Identities=13%  Similarity=0.174  Sum_probs=93.3

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWIN   92 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~   92 (365)
                      ++.++..|..+...|++++|...|++++..+|+    ...+..++.++...|+++.|...|++++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            467889999999999999999999999999887    3578889999999999999999999999998875   678999


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           93 FADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      +|.++...|+.++|...++++++. .|++
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~-~p~~  109 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKR-YPGS  109 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHH-CcCC
Confidence            999999999999999999999999 8887

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.19  E-value=1.8e-08  Score=80.07  Aligned_cols=184  Identities=9%  Similarity=0.016  Sum_probs=134.0

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH---HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW---INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF  129 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  129 (365)
                      ...+...+.-....|++++|+..|++++...|.++..-   ..+|..+.+.+++++|+..+++.++. .|++ +..+.++
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-~P~~-~~~~~a~  109 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-NPTH-PNIDYVL  109 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CcCC-CchHHHH
Confidence            56677788888899999999999999999999876554   88899999999999999999999999 9996 7778888


Q ss_pred             HHHHHHHHhcccc------------------chhHHHHHHHHHHhccCCCchhHH-HHHHHHHHHHHcCCchhhhHHHHH
Q 036703          130 VAFAKFEEMGCNC------------------KETDRARCIYKFALDRIPKGRAED-LYRKFLAFEKQYGDREGIEDAIAG  190 (365)
Q Consensus       130 ~~~~~~~~~~~~~------------------~~~~~A~~~~~~~l~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  190 (365)
                      +..|..+.   ..                  ....+|+..|++.++..|++.... ....+.                  
T Consensus       110 Y~~g~~~~---~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~------------------  168 (243)
T PRK10866        110 YMRGLTNM---ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLV------------------  168 (243)
T ss_pred             HHHHHhhh---hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH------------------
Confidence            88887643   22                  223467788888888888764211 111111                  


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHH
Q 036703          191 KMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERT  270 (365)
Q Consensus       191 ~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  270 (365)
                          ..+..+.      .--+..+.+|.+.|.+.-|+.-++.++...|..+..      .......+..+ ...|..++|
T Consensus       169 ----~l~~~la------~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~------~eal~~l~~ay-~~lg~~~~a  231 (243)
T PRK10866        169 ----FLKDRLA------KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQAT------RDALPLMENAY-RQLQLNAQA  231 (243)
T ss_pred             ----HHHHHHH------HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchH------HHHHHHHHHHH-HHcCChHHH
Confidence                1111111      112357788889999999999999999999987642      23444455555 477888887


Q ss_pred             HHHHHH
Q 036703          271 RDVYRT  276 (365)
Q Consensus       271 ~~~~~~  276 (365)
                      ......
T Consensus       232 ~~~~~~  237 (243)
T PRK10866        232 DKVAKI  237 (243)
T ss_pred             HHHHHH
Confidence            776544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.18  E-value=1e-08  Score=79.62  Aligned_cols=182  Identities=15%  Similarity=0.121  Sum_probs=122.7

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF  129 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  129 (365)
                      ...+...|......|++.+|+..|++++...|.+   +.+.+.+|..+...|+++.|+..+++.++. .|.+ +..+.++
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-yP~~-~~~~~A~   82 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-YPNS-PKADYAL   82 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT--TTHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCC-cchhhHH
Confidence            4567788888999999999999999999998865   577899999999999999999999999999 9996 6667777


Q ss_pred             HHHHHHHHh--------ccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH
Q 036703          130 VAFAKFEEM--------GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR  201 (365)
Q Consensus       130 ~~~~~~~~~--------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~  201 (365)
                      +..|..+..        ...++...+|+..|+..+...|++....--...                     +..+...+.
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~---------------------l~~l~~~la  141 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR---------------------LAELRNRLA  141 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH---------------------HHHHHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH---------------------HHHHHHHHH
Confidence            777766540        113344567888888888888876422111111                     011111111


Q ss_pred             cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHH
Q 036703          202 KNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERT  270 (365)
Q Consensus       202 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  270 (365)
                            .--+.+|.+|.+.|.+..|..-++.+++..|++...      -..+..++..+ ...|..+.+
T Consensus       142 ------~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~------~~al~~l~~~y-~~l~~~~~a  197 (203)
T PF13525_consen  142 ------EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA------EEALARLAEAY-YKLGLKQAA  197 (203)
T ss_dssp             ------HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH------HHHHHHHHHHH-HHTT-HHHH
T ss_pred             ------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH------HHHHHHHHHHH-HHhCChHHH
Confidence                  223457888999999999999999999999998642      12444455554 366665543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.18  E-value=6.8e-10  Score=75.30  Aligned_cols=94  Identities=21%  Similarity=0.316  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG  101 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  101 (365)
                      |..+|..+...|++++|+..++++++..|. ...|..++.++...|++++|...|++++...|.+..++..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            344444444444555555555554444444 3444444444444444444444444444444444444444444444444


Q ss_pred             chHHHHHHHHHHHhh
Q 036703          102 EVDRARNVYECAVEI  116 (365)
Q Consensus       102 ~~~~A~~~~~~a~~~  116 (365)
                      ++++|...+.++++.
T Consensus        83 ~~~~a~~~~~~~~~~   97 (100)
T cd00189          83 KYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            444444444444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.18  E-value=7.5e-10  Score=75.08  Aligned_cols=84  Identities=15%  Similarity=0.257  Sum_probs=73.4

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|...|+++++..|.+..++..+|.++...|++++|...|++++...|. ...|..++.++...|+++.|...+.++
T Consensus        15 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   94 (100)
T cd00189          15 DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA   94 (100)
T ss_pred             cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            4678888999999988888888889999999999999999999999988888 568888888888899999999999988


Q ss_pred             HHhCC
Q 036703           80 VQCHP   84 (365)
Q Consensus        80 l~~~p   84 (365)
                      +..+|
T Consensus        95 ~~~~~   99 (100)
T cd00189          95 LELDP   99 (100)
T ss_pred             HccCC
Confidence            88777

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.17  E-value=8.1e-10  Score=78.30  Aligned_cols=105  Identities=12%  Similarity=0.200  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV  130 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  130 (365)
                      ..++..+..+...|++++|...|.+++..+|++   +.+++.+|.++.+.|+++.|...|++++.. .|.+ +..+.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~-~~~~~~~~   80 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-YPKS-PKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-CCCC-CcccHHHH
Confidence            567888999999999999999999999999876   568899999999999999999999999998 8874 34467899


Q ss_pred             HHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       131 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      .++.++.   ..|++++|...+++++...|++.
T Consensus        81 ~~~~~~~---~~~~~~~A~~~~~~~~~~~p~~~  110 (119)
T TIGR02795        81 KLGMSLQ---ELGDKEKAKATLQQVIKRYPGSS  110 (119)
T ss_pred             HHHHHHH---HhCChHHHHHHHHHHHHHCcCCh
Confidence            9999999   99999999999999999999863

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.17  E-value=1.7e-09  Score=81.58  Aligned_cols=118  Identities=14%  Similarity=0.075  Sum_probs=96.2

Q ss_pred             hhHHHHHHHHHHhCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRV--DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIF   76 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~   76 (365)
                      ..+...+.+.++..+.+  ...|..+|.++...|++++|...|++++...|+    ..+|..++.++...|++++|+..+
T Consensus        16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~   95 (168)
T CHL00033         16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY   95 (168)
T ss_pred             ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34555666665555555  677899999999999999999999999988766    358999999999999999999999


Q ss_pred             HHHHHhCCcchHHHHHHHHHHH-------hhcchH-------HHHHHHHHHHhhhhcCC
Q 036703           77 ERLVQCHPYNLSAWINFADFEM-------KMGEVD-------RARNVYECAVEIFLADD  121 (365)
Q Consensus        77 ~~~l~~~p~~~~~~~~~~~~~~-------~~~~~~-------~A~~~~~~a~~~~~~~~  121 (365)
                      ++++..+|.....+..++.++.       ..|+++       +|..+|++++.. .|.+
T Consensus        96 ~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~-~p~~  153 (168)
T CHL00033         96 FQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIAL-APGN  153 (168)
T ss_pred             HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHh-Cccc
Confidence            9999999999999999998888       667766       555555666666 6654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.16  E-value=4.2e-09  Score=77.12  Aligned_cols=116  Identities=19%  Similarity=0.127  Sum_probs=100.4

Q ss_pred             hcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchH
Q 036703           32 NLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVD  104 (365)
Q Consensus        32 ~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~  104 (365)
                      ..++...+...+++.+..+|+    ....+.++..+...|++++|...|++++...|+.   +.+.+.++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            578899999999999999998    4677889999999999999999999999988754   457888999999999999


Q ss_pred             HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703          105 RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL  156 (365)
Q Consensus       105 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  156 (365)
                      +|+..++... . .+.    .+..+...|.++.   ..|++++|+..|++++
T Consensus       103 ~Al~~L~~~~-~-~~~----~~~~~~~~Gdi~~---~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQIP-D-EAF----KALAAELLGDIYL---AQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhcc-C-cch----HHHHHHHHHHHHH---HCCCHHHHHHHHHHhC
Confidence            9999996632 2 222    3778889999999   9999999999999875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.15  E-value=1.4e-10  Score=73.11  Aligned_cols=66  Identities=20%  Similarity=0.212  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhcc-chhHHHHHHHHHhcCcC
Q 036703          291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD-ETERARAIFELAIAQPI  356 (365)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~a~~~~~  356 (365)
                      +.+|...|.++...|++++|+..|+++++.+|+++.+|..+|.++...| ++++|+..++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5688999999999999999999999999999999999999999999999 79999999999999887

...

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.14  E-value=2.9e-06  Score=76.19  Aligned_cols=119  Identities=9%  Similarity=-0.030  Sum_probs=96.3

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ||.+|.+...+.++.+|+...+-..-|-...+.|+.++|..+++..-...++ ..+...+-.+|...|..++|..+|+++
T Consensus        24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~  103 (932)
T KOG2053|consen   24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERA  103 (932)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            5778999999999999999888888889999999999999777665555555 556677778999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      ++.+|. .+....+-..|.+.+.+.+-.+.--+.-+. +|.+
T Consensus       104 ~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~  143 (932)
T KOG2053|consen  104 NQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKR  143 (932)
T ss_pred             HhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcc
Confidence            999996 888888888888888776544444444445 5554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.14  E-value=5.8e-10  Score=70.28  Aligned_cols=63  Identities=24%  Similarity=0.436  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-chHHHHHHHHHHHhh
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG-EVDRARNVYECAVEI  116 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~  116 (365)
                      ..|..+|..+...|++++|+..|.++++.+|+++.+|..+|.++...| ++++|++.++++++.
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            344555555555555555555555555555555555555555555555 455555555555544

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=3.9e-09  Score=83.15  Aligned_cols=120  Identities=13%  Similarity=0.140  Sum_probs=109.4

Q ss_pred             hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc---chHHHHHHHH
Q 036703           36 VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG---EVDRARNVYE  111 (365)
Q Consensus        36 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~  111 (365)
                      .+..+.-++.-+..+|+ ...|..+|.+|..+|++..|...|.+++++.|++++++..++..+..+.   ...++..+++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            55667778888899999 8999999999999999999999999999999999999999999877653   4568999999


Q ss_pred             HHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          112 CAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      +++.. .|.+    ......++.-++   .+|++.+|...++..++..|.+.
T Consensus       218 ~al~~-D~~~----iral~lLA~~af---e~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         218 QALAL-DPAN----IRALSLLAFAAF---EQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHhc-CCcc----HHHHHHHHHHHH---HcccHHHHHHHHHHHHhcCCCCC
Confidence            99999 9988    999999999999   99999999999999999988764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.11  E-value=6.9e-09  Score=78.50  Aligned_cols=102  Identities=18%  Similarity=0.145  Sum_probs=87.4

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHH
Q 036703           18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF   93 (365)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~   93 (365)
                      ....++..+|..+...|++++|...|++++...|+    ...|..++.++...|++++|...+.+++...|++...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            44667899999999999999999999999988776    36889999999999999999999999999999999999999


Q ss_pred             HHHHHhhcc--------------hHHHHHHHHHHHhhhhcC
Q 036703           94 ADFEMKMGE--------------VDRARNVYECAVEIFLAD  120 (365)
Q Consensus        94 ~~~~~~~~~--------------~~~A~~~~~~a~~~~~~~  120 (365)
                      |.++...|+              +++|.+++++++.. .|+
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~-~p~  152 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL-APN  152 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh-Cch
Confidence            999988776              45556666666655 544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.11  E-value=3.1e-07  Score=71.98  Aligned_cols=292  Identities=11%  Similarity=-0.030  Sum_probs=200.5

Q ss_pred             HhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHH
Q 036703           31 ENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNV  109 (365)
Q Consensus        31 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~  109 (365)
                      .+..++..|++++..-.+.+|. ......++.+|....++..|..+|++.-...|......+..++.+.+.+.+..|+.+
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            5567788999999999999996 556677889999999999999999999999998888888889999999999999988


Q ss_pred             HHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHH
Q 036703          110 YECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIA  189 (365)
Q Consensus       110 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (365)
                      ...+... .    .-.......-+.+..   +.+++..++.+.++.    |+...+......+.+..+.|+.+       
T Consensus       101 ~~~~~D~-~----~L~~~~lqLqaAIkY---se~Dl~g~rsLveQl----p~en~Ad~~in~gCllykegqyE-------  161 (459)
T KOG4340|consen  101 AFLLLDN-P----ALHSRVLQLQAAIKY---SEGDLPGSRSLVEQL----PSENEADGQINLGCLLYKEGQYE-------  161 (459)
T ss_pred             HHHhcCC-H----HHHHHHHHHHHHHhc---ccccCcchHHHHHhc----cCCCccchhccchheeeccccHH-------
Confidence            8776554 1    111233333344444   678888888887764    43222455555566666777755       


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCchh----------------hhHHHHh
Q 036703          190 GKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN----VPPAEE----------------KRYWQRY  249 (365)
Q Consensus       190 ~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~----------------~~~~~~~  249 (365)
                       .|.+-|+.+++...-++-+-+.++.+..+.|++..|.++..+++..    .|.-..                ...-...
T Consensus       162 -aAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal  240 (459)
T KOG4340|consen  162 -AAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL  240 (459)
T ss_pred             -HHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence             6999999999998888888899999999999999998887766653    443110                0001112


Q ss_pred             HHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHH
Q 036703          250 IYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS  329 (365)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  329 (365)
                      +.....-+..+ .+.++++.|++.+..+--.....    -+|....+.+-.- ..+++.+..+-+.-.+..+|--.+...
T Consensus       241 ~eAfNLKaAIe-yq~~n~eAA~eaLtDmPPRaE~e----lDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFA  314 (459)
T KOG4340|consen  241 VEAFNLKAAIE-YQLRNYEAAQEALTDMPPRAEEE----LDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFA  314 (459)
T ss_pred             HHHhhhhhhhh-hhcccHHHHHHHhhcCCCccccc----CCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHH
Confidence            23333333333 47788888877654332111000    1233333333221 346788888888888888886667777


Q ss_pred             HHHHHHhhccchhHHHHHH
Q 036703          330 KYTELEKSLDETERARAIF  348 (365)
Q Consensus       330 ~~~~~~~~~g~~~~A~~~~  348 (365)
                      ++..++.+..-++.|..++
T Consensus       315 NlLllyCKNeyf~lAADvL  333 (459)
T KOG4340|consen  315 NLLLLYCKNEYFDLAADVL  333 (459)
T ss_pred             HHHHHHhhhHHHhHHHHHH
Confidence            7777777777677666654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=99.11  E-value=6.3e-07  Score=72.93  Aligned_cols=148  Identities=16%  Similarity=0.079  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCch
Q 036703          103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDRE  182 (365)
Q Consensus       103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  182 (365)
                      ...|+..-..+++. .|+-    ...-..-+..+.   +.|+..++-.+++.+-+..|.   ..++..|...  +.|+..
T Consensus       245 p~~Ar~~A~~a~KL-~pdl----vPaav~AAralf---~d~~~rKg~~ilE~aWK~ePH---P~ia~lY~~a--r~gdta  311 (531)
T COG3898         245 PASARDDALEANKL-APDL----VPAAVVAARALF---RDGNLRKGSKILETAWKAEPH---PDIALLYVRA--RSGDTA  311 (531)
T ss_pred             hHHHHHHHHHHhhc-CCcc----chHHHHHHHHHH---hccchhhhhhHHHHHHhcCCC---hHHHHHHHHh--cCCCcH
Confidence            33444444444444 3332    444455667777   899999999999999998887   4677777653  555532


Q ss_pred             hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhh
Q 036703          183 GIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV  262 (365)
Q Consensus       183 ~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  262 (365)
                      .       ...+-..+.-.+.|++.+..+..++.....|++..|+.--+.+....|...          +++.++.+.+.
T Consensus       312 ~-------dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres----------~~lLlAdIeeA  374 (531)
T COG3898         312 L-------DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES----------AYLLLADIEEA  374 (531)
T ss_pred             H-------HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh----------HHHHHHHHHhh
Confidence            1       112223344457899999999999999999999999999999999999864          67778888877


Q ss_pred             ccCChhHHHHHHHHHHhc
Q 036703          263 DAGDLERTRDVYRTLFIF  280 (365)
Q Consensus       263 ~~~~~~~a~~~~~~a~~~  280 (365)
                      ..|+-.+++..+.++++.
T Consensus       375 etGDqg~vR~wlAqav~A  392 (531)
T COG3898         375 ETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             ccCchHHHHHHHHHHhcC
Confidence            889999999999999987

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.11  E-value=4.3e-10  Score=73.85  Aligned_cols=80  Identities=18%  Similarity=0.261  Sum_probs=62.3

Q ss_pred             cCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHH
Q 036703           33 LGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNV  109 (365)
Q Consensus        33 ~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~  109 (365)
                      +|+++.|+..|+++++..|.   ...|..+|.++.+.|++++|..++++ ...+|.++.....+|.++.+.|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57788888888888888873   45677788888888888888888888 777777777777778888888888888888


Q ss_pred             HHHH
Q 036703          110 YECA  113 (365)
Q Consensus       110 ~~~a  113 (365)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            8764

>PRK11906 transcriptional regulator; Provisional

Probab=99.09  E-value=2.6e-08  Score=83.53  Aligned_cols=160  Identities=13%  Similarity=0.046  Sum_probs=126.7

Q ss_pred             HHHhCCCch---HHH----HHHHHHHHhcCC---hhHHHHHHHHHH---hhCCC-hHHHHHHHHHHHH---------hcc
Q 036703           12 VVTLSPRVD---QLW----NNYIRMEENLGN---VAGARQIFERWM---HWMPD-HEGWLSYIKFKLR---------YNE   68 (365)
Q Consensus        12 ~l~~~p~~~---~~~----~~~~~~~~~~g~---~~~A~~~~~~al---~~~p~-~~~~~~~~~~~~~---------~~~   68 (365)
                      +...-|.+.   ++|    +..|......+.   .+.|..+|.+++   .++|+ ..++..++.++..         ..+
T Consensus       240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~  319 (458)
T PRK11906        240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA  319 (458)
T ss_pred             hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence            344446666   666    444555555543   456889999999   99998 5555555555432         235


Q ss_pred             HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHH
Q 036703           69 VQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRA  148 (365)
Q Consensus        69 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  148 (365)
                      ..+|...-+++++.+|.|+.+...+|.+..-.++++.|...|++++.. .|+.    ..+|+..|.+..   -.|+.++|
T Consensus       320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L-~Pn~----A~~~~~~~~~~~---~~G~~~~a  391 (458)
T PRK11906        320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH-STDI----ASLYYYRALVHF---HNEKIEEA  391 (458)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc-CCcc----HHHHHHHHHHHH---HcCCHHHH
Confidence            678999999999999999999999999999999999999999999999 9988    999999999999   99999999


Q ss_pred             HHHHHHHhccCCCchhHHHHHHHHHHHHHcC
Q 036703          149 RCIYKFALDRIPKGRAEDLYRKFLAFEKQYG  179 (365)
Q Consensus       149 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  179 (365)
                      ++.++++++..|......+....+..+...+
T Consensus       392 ~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~  422 (458)
T PRK11906        392 RICIDKSLQLEPRRRKAVVIKECVDMYVPNP  422 (458)
T ss_pred             HHHHHHHhccCchhhHHHHHHHHHHHHcCCc
Confidence            9999999999998654555555555554444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.08  E-value=1.2e-09  Score=71.77  Aligned_cols=81  Identities=15%  Similarity=0.190  Sum_probs=70.7

Q ss_pred             hccHHHHHHHHHHHHHhCCc--chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703           66 YNEVQRARHIFERLVQCHPY--NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK  143 (365)
Q Consensus        66 ~~~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (365)
                      +|+++.|+.+|+++++..|.  +...|..+|.++.+.|++++|+.++++ .+. .|.+    ......+|.++.   ..|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~~~~----~~~~~l~a~~~~---~l~   72 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-DPSN----PDIHYLLARCLL---KLG   72 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-HHCH----HHHHHHHHHHHH---HTT
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-CCCC----HHHHHHHHHHHH---HhC
Confidence            68999999999999999995  567788899999999999999999999 767 6655    778888899999   999


Q ss_pred             hhHHHHHHHHHH
Q 036703          144 ETDRARCIYKFA  155 (365)
Q Consensus       144 ~~~~A~~~~~~~  155 (365)
                      ++++|+++|+++
T Consensus        73 ~y~eAi~~l~~~   84 (84)
T PF12895_consen   73 KYEEAIKALEKA   84 (84)
T ss_dssp             -HHHHHHHHHHH
T ss_pred             CHHHHHHHHhcC
Confidence            999999999875

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.08  E-value=1.1e-08  Score=83.38  Aligned_cols=287  Identities=10%  Similarity=0.041  Sum_probs=188.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHH------HHhCCcchHHHHHHHH
Q 036703           27 IRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERL------VQCHPYNLSAWINFAD   95 (365)
Q Consensus        27 ~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~------l~~~p~~~~~~~~~~~   95 (365)
                      |.-+++.|+....+.+|+.|++.-.+     ..++..++..|...++|++|.++...=      +...-.....--.+|.
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            56677899999999999999998776     457888999999999999998875432      2222223445567788


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhhcC--ChhhHHHHHHHHHHHHHhccccchh-------------HHHHHHHHHHhccCC
Q 036703           96 FEMKMGEVDRARNVYECAVEIFLAD--DHDEAEQLFVAFAKFEEMGCNCKET-------------DRARCIYKFALDRIP  160 (365)
Q Consensus        96 ~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~A~~~~~~~l~~~p  160 (365)
                      .+.-.|.+++|+.+..+-+.. ...  +......++++++.+|-   ..|+-             +++...++.+.    
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~-areLgDrv~e~RAlYNlgnvYh---akGk~~g~~~pee~g~f~~ev~~al~~Av----  175 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDF-ARELGDRVLESRALYNLGNVYH---AKGKCTGLEAPEEKGAFNAEVTSALENAV----  175 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHH-HHHHhHHHhhhHHHhhhhhhhh---hcccccCCCChhhcccccHHHHHHHHHHH----
Confidence            888999999999988776654 211  11223678888888887   55431             22333333322    


Q ss_pred             CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---
Q 036703          161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANV---  237 (365)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---  237 (365)
                           ++|..-..+....|+..                      .-..++-.+|..|.-.|+++.|+..-+.-+.+.   
T Consensus       176 -----~fy~eNL~l~~~lgDr~----------------------aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef  228 (639)
T KOG1130|consen  176 -----KFYMENLELSEKLGDRL----------------------AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF  228 (639)
T ss_pred             -----HHHHHHHHHHHHhhhHH----------------------hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh
Confidence                 12222222222222110                      012345667777777899999888777655542   


Q ss_pred             CCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHH
Q 036703          238 PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKY  317 (365)
Q Consensus       238 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  317 (365)
                      .+....      -..+.+++..+ .-.|+++.|.+.|++.+.+......---....-+.+++.|.-..++++|+.++.+-
T Consensus       229 GDrAae------RRA~sNlgN~h-iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH  301 (639)
T KOG1130|consen  229 GDRAAE------RRAHSNLGNCH-IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH  301 (639)
T ss_pred             hhHHHH------HHhhcccchhh-hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            221110      12445566665 46789999999999988764333211012556677888888889999999999987


Q ss_pred             HhhCc------chHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          318 LEWSP------ENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       318 l~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      +.+..      .....+..+++.+...|..++|....+..++..
T Consensus       302 LaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  302 LAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            76532      234678889999999999999998888776543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.08  E-value=8.9e-09  Score=86.62  Aligned_cols=124  Identities=14%  Similarity=0.108  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703           22 LWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG  101 (365)
Q Consensus        22 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  101 (365)
                      +-..+..+....++++.|+.+|++..+.+|+.  +..++.++...++-.+|..++.+++..+|.+..++...+.++.+.+
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence            34456677777899999999999999988873  4457888888899999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703          102 EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA  155 (365)
Q Consensus       102 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  155 (365)
                      +++.|+++.+++++. .|.+    ...|..++.+|.   ..|+++.|+..++.+
T Consensus       249 ~~~lAL~iAk~av~l-sP~~----f~~W~~La~~Yi---~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  249 KYELALEIAKKAVEL-SPSE----FETWYQLAECYI---QLGDFENALLALNSC  294 (395)
T ss_pred             CHHHHHHHHHHHHHh-Cchh----HHHHHHHHHHHH---hcCCHHHHHHHHhcC
Confidence            999999999999999 9988    999999999999   999999999887743

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.07  E-value=1.2e-09  Score=67.86  Aligned_cols=61  Identities=25%  Similarity=0.340  Sum_probs=32.3

Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703           59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD  120 (365)
Q Consensus        59 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  120 (365)
                      +|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++. .|+
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-~P~   63 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL-DPD   63 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcC
Confidence            3444555555555555555555555555555555555555555555555555555555 444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.06  E-value=1.9e-08  Score=88.60  Aligned_cols=144  Identities=15%  Similarity=0.101  Sum_probs=113.5

Q ss_pred             HHHHhCCCchHHHHHHHH--HHHhcCC---hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh--------ccHHHHHHHH
Q 036703           11 RVVTLSPRVDQLWNNYIR--MEENLGN---VAGARQIFERWMHWMPD-HEGWLSYIKFKLRY--------NEVQRARHIF   76 (365)
Q Consensus        11 ~~l~~~p~~~~~~~~~~~--~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~--------~~~~~A~~~~   76 (365)
                      ++....|.+..+|-.+.+  .+...++   ...|+.+|+++++.+|+ ..+|-.++.++...        ++...+....
T Consensus       328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~  407 (517)
T PRK10153        328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL  407 (517)
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            334456788888766544  4444433   67899999999999999 56665555444322        2345667777


Q ss_pred             HHHHHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 036703           77 ERLVQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKF  154 (365)
Q Consensus        77 ~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  154 (365)
                      .+++..  +|.++.++..+|......|++++|...+++++.. .| +    ...|..+|.++.   ..|++++|.+.|++
T Consensus       408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-~p-s----~~a~~~lG~~~~---~~G~~~eA~~~~~~  478 (517)
T PRK10153        408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-EM-S----WLNYVLLGKVYE---LKGDNRLAADAYST  478 (517)
T ss_pred             HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-C----HHHHHHHHHHHH---HcCCHHHHHHHHHH
Confidence            776664  6777888999999999999999999999999999 87 4    789999999999   99999999999999


Q ss_pred             HhccCCCch
Q 036703          155 ALDRIPKGR  163 (365)
Q Consensus       155 ~l~~~p~~~  163 (365)
                      |+...|..+
T Consensus       479 A~~L~P~~p  487 (517)
T PRK10153        479 AFNLRPGEN  487 (517)
T ss_pred             HHhcCCCCc
Confidence            999999875

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.04  E-value=8.3e-09  Score=82.50  Aligned_cols=105  Identities=13%  Similarity=0.155  Sum_probs=94.6

Q ss_pred             HHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703           54 EGWLSYIKFK-LRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF  129 (365)
Q Consensus        54 ~~~~~~~~~~-~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  129 (365)
                      ..++..+..+ ...|++++|+..|++.+..+|++   +.+++.+|.++...|++++|+..|+++++. .|++ +..+.++
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s-~~~~dAl  220 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKS-PKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCC-cchhHHH
Confidence            5566666544 56799999999999999999987   579999999999999999999999999999 9986 7779999


Q ss_pred             HHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      +.+|.++.   ..|+.++|+.+|+++++..|++.
T Consensus       221 ~klg~~~~---~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        221 FKVGVIMQ---DKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHH---HcCCHHHHHHHHHHHHHHCcCCH
Confidence            99999999   99999999999999999999874

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.04  E-value=2.3e-08  Score=75.59  Aligned_cols=95  Identities=15%  Similarity=-0.003  Sum_probs=73.0

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF  129 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  129 (365)
                      ...+..++..+...|++++|...|++++...|+.   ..++..+|.++...|++++|+..++++++. .|.+    ...+
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~  109 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-NPKQ----PSAL  109 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cccc----HHHH
Confidence            3467778888888888888888888888876643   467888888888888888888888888888 7776    7777


Q ss_pred             HHHHHHHHhccccchhHHHHHHHHHH
Q 036703          130 VAFAKFEEMGCNCKETDRARCIYKFA  155 (365)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~A~~~~~~~  155 (365)
                      ..+|.++.   ..|+...+...++.+
T Consensus       110 ~~lg~~~~---~~g~~~~a~~~~~~A  132 (172)
T PRK02603        110 NNIAVIYH---KRGEKAEEAGDQDEA  132 (172)
T ss_pred             HHHHHHHH---HcCChHhHhhCHHHH
Confidence            88888887   777665555444443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=99.03  E-value=3.2e-08  Score=68.59  Aligned_cols=96  Identities=13%  Similarity=0.074  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---chHHHHHH
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY---NLSAWINF   93 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~   93 (365)
                      .+++.++..+-..|+.++|+..|++++...++    ..+++.++..+...|++++|..++++++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            46788899999999999999999999986554    568899999999999999999999999999888   77888888


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhh
Q 036703           94 ADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        94 ~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      +..+...|+.++|+..+-.++..
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALAE  104 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999988777654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.02  E-value=5.9e-09  Score=78.61  Aligned_cols=128  Identities=14%  Similarity=0.121  Sum_probs=99.6

Q ss_pred             CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHH
Q 036703          222 NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEM  300 (365)
Q Consensus       222 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~  300 (365)
                      .+..+...+...++..+.+..       ...|...+..+ ...|++++|+..|++++...++.    +. +..+..+|.+
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~-------a~~~~~~g~~~-~~~g~~~~A~~~~~~al~l~~~~----~~~~~~~~~lg~~   81 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKE-------AFTYYRDGMSA-QSEGEYAEALQNYYEAMRLEIDP----YDRSYILYNIGLI   81 (168)
T ss_pred             ccccchhhhhHhccCCchhHH-------HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhccccc----hhhHHHHHHHHHH
Confidence            355566666555555554433       45777788876 58899999999999999886431    12 4588999999


Q ss_pred             HHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh-------hccchh-------HHHHHHHHHhcCcCCCCCc
Q 036703          301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK-------SLDETE-------RARAIFELAIAQPILDLPE  361 (365)
Q Consensus       301 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------~~g~~~-------~A~~~~~~a~~~~~~~~p~  361 (365)
                      +...|++++|+..|++++..+|.+...+..++.++.       ..|+++       +|...|++++..+|.+.|+
T Consensus        82 ~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~  156 (168)
T CHL00033         82 HTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIE  156 (168)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHH
Confidence            999999999999999999999999999999998888       666655       7777777888888865544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.02  E-value=2.4e-09  Score=66.45  Aligned_cols=63  Identities=22%  Similarity=0.283  Sum_probs=58.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703           25 NYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL   87 (365)
Q Consensus        25 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~   87 (365)
                      .+|..+...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++.+|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5789999999999999999999999999 89999999999999999999999999999999875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.01  E-value=3.8e-08  Score=80.73  Aligned_cols=205  Identities=13%  Similarity=0.123  Sum_probs=141.4

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------c
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY------N   86 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~   86 (365)
                      .+.+..-|..+...|++++|...|.++....-.       ...+...+.++.+. ++++|+..|++++...-.      -
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a  113 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            455777889999999999999999999764321       34566666776555 999999999999985321      2


Q ss_pred             hHHHHHHHHHHHhh-cchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703           87 LSAWINFADFEMKM-GEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus        87 ~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      ..++..+|.++... |++++|++.|++|++. ....  ...........+.++.   ..|++++|++.|++.....-.+.
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~-y~~e~~~~~a~~~~~~~A~l~~---~l~~y~~A~~~~e~~~~~~l~~~  189 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAEL-YEQEGSPHSAAECLLKAADLYA---RLGRYEEAIEIYEEVAKKCLENN  189 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHH-HHHTT-HHHHHHHHHHHHHHHH---HTT-HHHHHHHHHHHHHTCCCHC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHCCChhhHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHhhccc
Confidence            56788999999998 9999999999999998 5433  2233567788999999   99999999999999887543321


Q ss_pred             -----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHH--HhCCHHHHHHHHH
Q 036703          164 -----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY-----DTWFDYIRLEE--RVGNQERVREVYE  231 (365)
Q Consensus       164 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~-----~~~~~~~~~~~--~~~~~~~A~~~~~  231 (365)
                           ....+...+.++...|+.-        .|...+++....+|...     .+...+...+.  ....++.++.-|.
T Consensus       190 l~~~~~~~~~l~a~l~~L~~~D~v--------~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d  261 (282)
T PF14938_consen  190 LLKYSAKEYFLKAILCHLAMGDYV--------AARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD  261 (282)
T ss_dssp             TTGHHHHHHHHHHHHHHHHTT-HH--------HHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred             ccchhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence                 2235555566677777744        68899999998888542     23444444443  2234555655555


Q ss_pred             HHHhcC
Q 036703          232 RAIANV  237 (365)
Q Consensus       232 ~~~~~~  237 (365)
                      ...+.+
T Consensus       262 ~~~~ld  267 (282)
T PF14938_consen  262 SISRLD  267 (282)
T ss_dssp             TSS---
T ss_pred             ccCccH
Confidence            544433

>PRK11906 transcriptional regulator; Provisional

Probab=99.01  E-value=3.2e-08  Score=82.97  Aligned_cols=149  Identities=8%  Similarity=-0.009  Sum_probs=122.3

Q ss_pred             hhhHHHHHHHHH---HhCCCchHHHHHHHHHHHhc---------CChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhcc
Q 036703            2 IDHGRNAWDRVV---TLSPRVDQLWNNYIRMEENL---------GNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNE   68 (365)
Q Consensus         2 ~~~A~~~~~~~l---~~~p~~~~~~~~~~~~~~~~---------g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~   68 (365)
                      .+.|..+|.+++   .++|....+|..++.++...         .+..+|.+..+++++++|. +.+...+|......++
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~  353 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ  353 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence            357889999999   99999999999998887754         2455789999999999999 7788888888888899


Q ss_pred             HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHH
Q 036703           69 VQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRA  148 (365)
Q Consensus        69 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  148 (365)
                      ++.|...|++++..+|+.+.+|...|.+..-.|+.++|++.++++++. .|..  ....+.......|.    ....+.|
T Consensus       354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL-sP~~--~~~~~~~~~~~~~~----~~~~~~~  426 (458)
T PRK11906        354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL-EPRR--RKAVVIKECVDMYV----PNPLKNN  426 (458)
T ss_pred             hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-Cchh--hHHHHHHHHHHHHc----CCchhhh
Confidence            999999999999999999999999999999999999999999999999 8865  11223333343454    4457777


Q ss_pred             HHHHHHHhc
Q 036703          149 RCIYKFALD  157 (365)
Q Consensus       149 ~~~~~~~l~  157 (365)
                      +++|-+-.+
T Consensus       427 ~~~~~~~~~  435 (458)
T PRK11906        427 IKLYYKETE  435 (458)
T ss_pred             HHHHhhccc
Confidence            777765443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=99.00  E-value=1.5e-08  Score=85.24  Aligned_cols=110  Identities=15%  Similarity=0.193  Sum_probs=101.2

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      +++.|+.+|++..+.+|+   +...+++++...++..+|++++.++++..|. ..++...+.++...++++.|..+.+++
T Consensus       184 ~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a  260 (395)
T PF09295_consen  184 RYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA  260 (395)
T ss_pred             cHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            368899999999998876   5667899999999999999999999999998 788889999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHH
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECA  113 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  113 (365)
                      +...|++...|..++.+|.+.|+++.|+-.+..+
T Consensus       261 v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  261 VELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            9999999999999999999999999999776643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.00  E-value=1.2e-08  Score=89.90  Aligned_cols=118  Identities=7%  Similarity=0.070  Sum_probs=100.5

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhc--------CChhHHHHHHHHHHhh--CCC-hHHHHHHHHHHHHhccHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENL--------GNVAGARQIFERWMHW--MPD-HEGWLSYIKFKLRYNEVQ   70 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~--------g~~~~A~~~~~~al~~--~p~-~~~~~~~~~~~~~~~~~~   70 (365)
                      +..|+.+|+++++.+|++..+|..++.++...        ++...+....++++..  +|. +.++..++......|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            56899999999999999999998887766543        1234566666776664  444 677888888888899999


Q ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        71 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      +|...+++++..+| +...|..+|.++...|+.++|.+.|++|+.. .|..
T Consensus       438 ~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L-~P~~  486 (517)
T PRK10153        438 EAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL-RPGE  486 (517)
T ss_pred             HHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC
Confidence            99999999999999 6889999999999999999999999999999 9886

>PRK15331 chaperone protein SicA; Provisional

Probab=98.99  E-value=1.1e-08  Score=73.65  Aligned_cols=102  Identities=11%  Similarity=0.020  Sum_probs=94.8

Q ss_pred             hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHH
Q 036703           15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF   93 (365)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~   93 (365)
                      +.++.-+..+.+|--+...|++++|..+|.-+...+|. .+.|..+|.++...+++++|+..|..+....++++...+..
T Consensus        32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a  111 (165)
T PRK15331         32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT  111 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence            34445666788899999999999999999999999998 88999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhh
Q 036703           94 ADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        94 ~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      |+++...|+.+.|+.+|+.++..
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVNER  134 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhC
Confidence            99999999999999999999986

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.99  E-value=2e-06  Score=76.60  Aligned_cols=100  Identities=17%  Similarity=0.253  Sum_probs=76.8

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHH----------HHhCCc----------chHHHHHHHHHHHhhcchHHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERL----------VQCHPY----------NLSAWINFADFEMKMGEVDRARNVYEC  112 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~----------l~~~p~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~  112 (365)
                      ..++..++..+...+|.+.|++.|+++          +..+|.          ++.+|.-+|+.....|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            357888898888999999999999873          344443          567888999999999999999999999


Q ss_pred             HHhhhhcCC-----------------hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703          113 AVEIFLADD-----------------HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL  156 (365)
Q Consensus       113 a~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  156 (365)
                      |-.. +.--                 ...+..+-+.+|+.|.   ..|++.+|...|.++-
T Consensus       938 A~D~-fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE---n~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  938 AKDY-FSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE---NDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hhhh-hhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh---hhHHHHHHHHHHHHHH
Confidence            8765 2211                 1112456677888888   9999999998887653

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.95  E-value=6.5e-08  Score=77.42  Aligned_cols=101  Identities=14%  Similarity=0.144  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHH-HhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHH
Q 036703           20 DQLWNNYIRME-ENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWI   91 (365)
Q Consensus        20 ~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~   91 (365)
                      ...++..+..+ ...|++++|+..|+..++..|+    +.+++.+|.++...|+++.|...|++++..+|++   ++++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            35666666655 6679999999999999999998    4789999999999999999999999999998874   78889


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           92 NFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        92 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      .+|.++...|+.++|+..|+++++. .|++
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~-yP~s  250 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKK-YPGT  250 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH-CcCC
Confidence            9999999999999999999999999 9986

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.95  E-value=1.3e-05  Score=65.58  Aligned_cols=292  Identities=16%  Similarity=0.070  Sum_probs=200.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhh-CCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH-HHHHHHHHHhhcc
Q 036703           27 IRMEENLGNVAGARQIFERWMHW-MPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA-WINFADFEMKMGE  102 (365)
Q Consensus        27 ~~~~~~~g~~~~A~~~~~~al~~-~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-~~~~~~~~~~~~~  102 (365)
                      |.+....|+-..|++.-.++-++ ..+  +-+.+.-++...-.|+++.|++-|+.++. +|..-.+ ...+-.--.+.|.
T Consensus        91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~Ga  169 (531)
T COG3898          91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGA  169 (531)
T ss_pred             hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhccc
Confidence            34444567888899888887743 333  33333445666678999999999987764 3422221 1111122335799


Q ss_pred             hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc---CCCc--hhHHHHHHHHHHHHH
Q 036703          103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR---IPKG--RAEDLYRKFLAFEKQ  177 (365)
Q Consensus       103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~--~~~~~~~~~~~~~~~  177 (365)
                      .+.|+.+-+++-.. .|.-    +-.+.....-..   ..|+++.|+++.+.....   .+..  ...-+...---...-
T Consensus       170 reaAr~yAe~Aa~~-Ap~l----~WA~~AtLe~r~---~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l  241 (531)
T COG3898         170 REAARHYAERAAEK-APQL----PWAARATLEARC---AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL  241 (531)
T ss_pred             HHHHHHHHHHHHhh-ccCC----chHHHHHHHHHH---hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence            99999999999998 8776    556665555556   789999999999865542   1211  111111111111112


Q ss_pred             cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH
Q 036703          178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA  257 (365)
Q Consensus       178 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  257 (365)
                      ..+..        .|+..-..++++.|+....-..-+..+...|+..++-.+++.+-+..|.-.          ++..|.
T Consensus       242 dadp~--------~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~----------ia~lY~  303 (531)
T COG3898         242 DADPA--------SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD----------IALLYV  303 (531)
T ss_pred             cCChH--------HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH----------HHHHHH
Confidence            22222        578888899999999999888899999999999999999999999988742          555554


Q ss_pred             HHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703          258 LYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK  336 (365)
Q Consensus       258 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  336 (365)
                      ..   +.|+  .++.-++++-++..-.    |+ .+.....+......|++..|+.--+.+....| ...++..++.++.
T Consensus       304 ~a---r~gd--ta~dRlkRa~~L~slk----~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIee  373 (531)
T COG3898         304 RA---RSGD--TALDRLKRAKKLESLK----PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEE  373 (531)
T ss_pred             Hh---cCCC--cHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHh
Confidence            33   4454  3444444444331100    33 55566777778889999999999999999999 5677888999988


Q ss_pred             hc-cchhHHHHHHHHHhcCc
Q 036703          337 SL-DETERARAIFELAIAQP  355 (365)
Q Consensus       337 ~~-g~~~~A~~~~~~a~~~~  355 (365)
                      .. ||-.+++..+.++++..
T Consensus       374 AetGDqg~vR~wlAqav~AP  393 (531)
T COG3898         374 AETGDQGKVRQWLAQAVKAP  393 (531)
T ss_pred             hccCchHHHHHHHHHHhcCC
Confidence            76 99999999999999754

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.94  E-value=6.9e-09  Score=65.10  Aligned_cols=66  Identities=23%  Similarity=0.305  Sum_probs=44.8

Q ss_pred             HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 036703           64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAK  134 (365)
Q Consensus        64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  134 (365)
                      ...|++++|+..|++++..+|++..++..++.++.+.|++++|...+++++.. .|++    +.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~~~----~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-DPDN----PEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-GTTH----HHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCH----HHHHHHHhc
Confidence            35667777777777777777777777777777777777777777777777777 6664    555554443

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.92  E-value=4.1e-06  Score=67.38  Aligned_cols=223  Identities=18%  Similarity=0.212  Sum_probs=172.5

Q ss_pred             hhHHHHHHHHHHhCCC--chHHHHHHHHHHHhcCChhHHHHHHHHHHh--hCCC-hHHHHHHHHHHHHhccHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPR--VDQLWNNYIRMEENLGNVAGARQIFERWMH--WMPD-HEGWLSYIKFKLRYNEVQRARHIFE   77 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~   77 (365)
                      ..+...+...+...+.  ........+..+...+++..+...+...+.  ..+. ...+...+......+++..+...+.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (291)
T COG0457          40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE  119 (291)
T ss_pred             HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3455666777777666  367788888889999999999999999986  4555 6788888888989999999999999


Q ss_pred             HHHHhCCcchHHHHHHHH-HHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703           78 RLVQCHPYNLSAWINFAD-FEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL  156 (365)
Q Consensus        78 ~~l~~~p~~~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  156 (365)
                      +++...+.+......... ++...|+++.|...+.+++.. .|.. ..........+..+.   ..++++.+...+.+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~  194 (291)
T COG0457         120 KALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL-DPEL-NELAEALLALGALLE---ALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCc-cchHHHHHHhhhHHH---HhcCHHHHHHHHHHHH
Confidence            999988876565666666 788899999999999999776 6520 112555566666677   7889999999999999


Q ss_pred             ccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703          157 DRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN  236 (365)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  236 (365)
                      ...+.. ....+......+...+...        .+...+..++...|.....+...+..+...+..+.+...+.+++..
T Consensus       195 ~~~~~~-~~~~~~~~~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         195 KLNPDD-DAEALLNLGLLYLKLGKYE--------EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hhCccc-chHHHHHhhHHHHHcccHH--------HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            887772 1345666666666666433        6889999999998887777777777766777899999999999998


Q ss_pred             CCC
Q 036703          237 VPP  239 (365)
Q Consensus       237 ~p~  239 (365)
                      .|.
T Consensus       266 ~~~  268 (291)
T COG0457         266 DPD  268 (291)
T ss_pred             Ccc
Confidence            886

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=2.3e-06  Score=66.09  Aligned_cols=69  Identities=13%  Similarity=0.109  Sum_probs=32.7

Q ss_pred             hhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccch
Q 036703          267 LERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDET  341 (365)
Q Consensus       267 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~  341 (365)
                      +..|.-+|+..-...+      |.+.+....+.+.+.+|++++|..+++.++..+++++++..++.-+-...|..
T Consensus       189 ~qdAfyifeE~s~k~~------~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  189 IQDAFYIFEELSEKTP------PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             hhhHHHHHHHHhcccC------CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            4444444444444221      33444444444445555555555555555555555555555554444444443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.90  E-value=7.4e-09  Score=64.98  Aligned_cols=65  Identities=23%  Similarity=0.292  Sum_probs=46.5

Q ss_pred             HhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703           31 ENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD   95 (365)
Q Consensus        31 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~   95 (365)
                      ...|++++|+..|++++..+|+ ..++..++.++...|++++|..++++++..+|+++..+..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            4567777777777777777776 6777777777777777777777777777777766666665554

...

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=98.87  E-value=5.6e-06  Score=73.82  Aligned_cols=97  Identities=13%  Similarity=0.155  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh--Ccc-hH
Q 036703          250 IYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW--SPE-NC  325 (365)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~-~~  325 (365)
                      ..+.-.++.++...+++.+.++.+....+....      .. ...|..++++....|+...++.++.+|+..  +|+ -.
T Consensus       461 ~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~------~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~  534 (881)
T KOG0128|consen  461 TEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG------GSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDAL  534 (881)
T ss_pred             HHHHHHHHHHHHHHhhchhhhhHhhhccccCCc------chHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHH
Confidence            345566777765567889999998887776621      12 337899999999999999999999999865  454 34


Q ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703          326 YAWSKYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       326 ~~~~~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                      .++..+-.++...|.++.....-++.+
T Consensus       535 ev~~~~~r~Ere~gtl~~~~~~~~~~~  561 (881)
T KOG0128|consen  535 EVLEFFRRFEREYGTLESFDLCPEKVL  561 (881)
T ss_pred             HHHHHHHHHHhccccHHHHhhhHHhhc
Confidence            678888889999998877665554443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1.2e-07  Score=77.71  Aligned_cols=131  Identities=15%  Similarity=0.250  Sum_probs=111.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCC-------C---------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMP-------D---------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN   86 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-------~---------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~   86 (365)
                      ....|..+.+.|++..|...|++++..-+       +         ....+.++-++.+.+++..|+....++|..+|+|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            45568899999999999999999987533       1         2357788999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhH-HHHHHHHHHhccCCC
Q 036703           87 LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETD-RARCIYKFALDRIPK  161 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~~l~~~p~  161 (365)
                      +.+.++-|..+...|+++.|+..|+++++. .|.+    -.+-..+..+-.   +..++. +..+.|.+++...+.
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~-~P~N----ka~~~el~~l~~---k~~~~~~kekk~y~~mF~k~~~  358 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKL-EPSN----KAARAELIKLKQ---KIREYEEKEKKMYANMFAKLAE  358 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcccc
Confidence            999999999999999999999999999999 9998    777777777766   555444 458888888876553

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=8.5e-06  Score=63.11  Aligned_cols=229  Identities=11%  Similarity=-0.028  Sum_probs=131.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCcch-HHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERL-VQCHPYNL-SAWINFADFE   97 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~~p~~~-~~~~~~~~~~   97 (365)
                      ...-..+.+.|...|.+...+.....+-  .|...+...++.+...-++.+.-..-+.+. ......+. .....-+.++
T Consensus        41 ~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~  118 (299)
T KOG3081|consen   41 VELDVYMYRAYLALGQYQIVISEIKEGK--ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY  118 (299)
T ss_pred             hHHHHHHHHHHHHccccccccccccccc--CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence            4444455555555555444333322221  122334445555544444444433333333 32222233 3444556778


Q ss_pred             HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 036703           98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ  177 (365)
Q Consensus        98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  177 (365)
                      ...|++++|.+..+....          .++...-..++.   +..+++-|...++++.+...+.....+-..++.+...
T Consensus       119 ~~~~~~deAl~~~~~~~~----------lE~~Al~VqI~l---k~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g  185 (299)
T KOG3081|consen  119 MHDGDFDEALKALHLGEN----------LEAAALNVQILL---KMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG  185 (299)
T ss_pred             hcCCChHHHHHHHhccch----------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc
Confidence            888899999888877332          334444455566   7778888888888888766553222233333333222


Q ss_pred             cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH
Q 036703          178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA  257 (365)
Q Consensus       178 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  257 (365)
                      .+.        +..|.-+|+..-+..|..+.+....+.+....|++++|..+++.++..++.+++         ...+..
T Consensus       186 gek--------~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe---------tL~Nli  248 (299)
T KOG3081|consen  186 GEK--------IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE---------TLANLI  248 (299)
T ss_pred             chh--------hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH---------HHHHHH
Confidence            221        335778888888877888888888888888899999999999999998888765         444444


Q ss_pred             HHHhhccCChhHHHH-HHHHHHhcc
Q 036703          258 LYKEVDAGDLERTRD-VYRTLFIFY  281 (365)
Q Consensus       258 ~~~~~~~~~~~~a~~-~~~~a~~~~  281 (365)
                      ..- ...|...++.+ .+.+....+
T Consensus       249 v~a-~~~Gkd~~~~~r~l~QLk~~~  272 (299)
T KOG3081|consen  249 VLA-LHLGKDAEVTERNLSQLKLSH  272 (299)
T ss_pred             HHH-HHhCCChHHHHHHHHHHHhcC
Confidence            442 35565544443 334444444

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.85  E-value=4.2e-05  Score=69.09  Aligned_cols=231  Identities=13%  Similarity=0.092  Sum_probs=152.2

Q ss_pred             hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHH
Q 036703           32 NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVY  110 (365)
Q Consensus        32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~  110 (365)
                      ..+++.+|.+...+.++.+|+ .-+-..-+-...+.|..++|..+++..-...+++..+.-.+-.+|...|+.++|..+|
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y  100 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY  100 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence            457899999999999999999 4444445667788999999998888777778888889999999999999999999999


Q ss_pred             HHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhh-HHHH
Q 036703          111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE-DAIA  189 (365)
Q Consensus       111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  189 (365)
                      ++++.. +|.. ......+..+++...   -...-..|.++|+    ..|.+. ..+|....-+......++... ...+
T Consensus       101 e~~~~~-~P~e-ell~~lFmayvR~~~---yk~qQkaa~~LyK----~~pk~~-yyfWsV~Slilqs~~~~~~~~~~i~l  170 (932)
T KOG2053|consen  101 ERANQK-YPSE-ELLYHLFMAYVREKS---YKKQQKAALQLYK----NFPKRA-YYFWSVISLILQSIFSENELLDPILL  170 (932)
T ss_pred             HHHHhh-CCcH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHH----hCCccc-chHHHHHHHHHHhccCCcccccchhH
Confidence            999999 9873 223333444444443   3334445666665    456653 457777665555544444433 2455


Q ss_pred             HHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHh-cCCCchhhhHHHHhHHHHHHHHHHHhhccCC
Q 036703          190 GKMRLQYEDGVRKN-PMN-YDTWFDYIRLEERVGNQERVREVYERAIA-NVPPAEEKRYWQRYIYLWINYALYKEVDAGD  266 (365)
Q Consensus       190 ~~a~~~~~~~l~~~-p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (365)
                      -.|...+++.+... +-. ..-...+..++..+|++++|...+..-+. ..++...        .+-.....++ ...++
T Consensus       171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~--------~l~~~~~dll-k~l~~  241 (932)
T KOG2053|consen  171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANL--------YLENKKLDLL-KLLNR  241 (932)
T ss_pred             HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccch--------HHHHHHHHHH-HHhcC
Confidence            66788888888766 222 22234445556778999999999954433 3333221        1111222232 34556


Q ss_pred             hhHHHHHHHHHHhcc
Q 036703          267 LERTRDVYRTLFIFY  281 (365)
Q Consensus       267 ~~~a~~~~~~a~~~~  281 (365)
                      +.+..++..+.+...
T Consensus       242 w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  242 WQELFELSSRLLEKG  256 (932)
T ss_pred             hHHHHHHHHHHHHhC
Confidence            666666666666554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.84  E-value=1.6e-06  Score=77.14  Aligned_cols=116  Identities=16%  Similarity=0.197  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHH------------HHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIF------------ERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL   87 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~   87 (365)
                      ..+|-.++....+..+.+-|.-.+            .++.+ +|+ ..=...+-+....|-.++|..+|++.-..+    
T Consensus       757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D----  830 (1416)
T KOG3617|consen  757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD----  830 (1416)
T ss_pred             hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence            467888877777665554443322            22222 332 111234455566777788888887765433    


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703           88 SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA  155 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  155 (365)
                          .+-.+|...|.+++|.++-+.--+.       .-...++.++..+.   ..++.+.|+++|+++
T Consensus       831 ----LlNKlyQs~g~w~eA~eiAE~~DRi-------HLr~Tyy~yA~~Le---ar~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  831 ----LLNKLYQSQGMWSEAFEIAETKDRI-------HLRNTYYNYAKYLE---ARRDIEAALEYYEKA  884 (1416)
T ss_pred             ----HHHHHHHhcccHHHHHHHHhhccce-------ehhhhHHHHHHHHH---hhccHHHHHHHHHhc
Confidence                3445677788888887765543222       23568899999999   999999999999975

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.84  E-value=2.8e-05  Score=62.42  Aligned_cols=223  Identities=19%  Similarity=0.213  Sum_probs=176.3

Q ss_pred             cCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCcchHHHHHHHHHHHhhcchHHHH
Q 036703           33 LGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLVQ--CHPYNLSAWINFADFEMKMGEVDRAR  107 (365)
Q Consensus        33 ~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~~~~~~A~  107 (365)
                      .+....+...+...+...+.   .......+..+...+++..+...+...+.  ..+.....+...+......+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            46777788888888887775   46677788888899999999999999997  67878899999999999999999999


Q ss_pred             HHHHHHHhhhhcCChhhHHHHHHHHHH-HHHhccccchhHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHcCCchhhh
Q 036703          108 NVYECAVEIFLADDHDEAEQLFVAFAK-FEEMGCNCKETDRARCIYKFALDRIPK-GRAEDLYRKFLAFEKQYGDREGIE  185 (365)
Q Consensus       108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~  185 (365)
                      ..+..++.. .+.+    ......... ++.   ..|+++.|...|++++...|. .................++.    
T Consensus       116 ~~~~~~~~~-~~~~----~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  183 (291)
T COG0457         116 ELLEKALAL-DPDP----DLAEALLALGALY---ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY----  183 (291)
T ss_pred             HHHHHHHcC-CCCc----chHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH----
Confidence            999999987 6654    344444444 777   899999999999999886652 22233444444444444543    


Q ss_pred             HHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhcc
Q 036703          186 DAIAGKMRLQYEDGVRKNPM-NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDA  264 (365)
Q Consensus       186 ~~~~~~a~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (365)
                          ..+...+.+++...|. ....+..++..+...+++..|...+..++...|...         ..+...+..+. ..
T Consensus       184 ----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~  249 (291)
T COG0457         184 ----EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNA---------EALYNLALLLL-EL  249 (291)
T ss_pred             ----HHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccH---------HHHhhHHHHHH-Hc
Confidence                3699999999999999 689999999999999999999999999999998732         24444555543 66


Q ss_pred             CChhHHHHHHHHHHhcc
Q 036703          265 GDLERTRDVYRTLFIFY  281 (365)
Q Consensus       265 ~~~~~a~~~~~~a~~~~  281 (365)
                      +..+.+...+.+++...
T Consensus       250 ~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         250 GRYEEALEALEKALELD  266 (291)
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            78999999999999887

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.80  E-value=5.1e-08  Score=62.11  Aligned_cols=62  Identities=21%  Similarity=0.297  Sum_probs=31.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH
Q 036703           28 RMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA   89 (365)
Q Consensus        28 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   89 (365)
                      .++.+.+++++|+.++++++..+|+ +..|..+|.++...|++++|...|+++++..|+++..
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            3444455555555555555555555 4455555555555555555555555555555544433

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.79  E-value=3.6e-07  Score=74.81  Aligned_cols=289  Identities=12%  Similarity=0.037  Sum_probs=165.1

Q ss_pred             hhhHHHHHHHHHHhCCCc----hHHHHHHHHHHHhcCChhHHHHHHHHHHhhC---CC----hHHHHHHHHHHHHhccHH
Q 036703            2 IDHGRNAWDRVVTLSPRV----DQLWNNYIRMEENLGNVAGARQIFERWMHWM---PD----HEGWLSYIKFKLRYNEVQ   70 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~~~~~~~~~~~~   70 (365)
                      +...+..|+.+++.-..+    ..+|..+|..|.-.+++++|.++-.-=+.+.   .+    ...--.++......|.++
T Consensus        33 craGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fd  112 (639)
T KOG1130|consen   33 CRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFD  112 (639)
T ss_pred             hhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccc
Confidence            345677899999886655    3456777788888888888877543322111   11    233345677778889999


Q ss_pred             HHHHHHHHHHHhCC------cchHHHHHHHHHHHhhcc-------------hHHHHHHHHHHHhhhhcCC---------h
Q 036703           71 RARHIFERLVQCHP------YNLSAWINFADFEMKMGE-------------VDRARNVYECAVEIFLADD---------H  122 (365)
Q Consensus        71 ~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~~~-------------~~~A~~~~~~a~~~~~~~~---------~  122 (365)
                      +|..+..+-+....      ....+++.+|.+|...|+             .+++...++.|++. ...+         .
T Consensus       113 eA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f-y~eNL~l~~~lgDr  191 (639)
T KOG1130|consen  113 EALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF-YMENLELSEKLGDR  191 (639)
T ss_pred             hHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH-HHHHHHHHHHhhhH
Confidence            99988877665422      245678889999887663             23444445554443 2221         0


Q ss_pred             hhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703          123 DEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK  202 (365)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~  202 (365)
                      ......+-++|+.|.   -.|+++.|+...+.-+.+                ....|+..                 -+ 
T Consensus       192 ~aqGRa~GnLGNTyY---lLGdf~~ai~~H~~RL~i----------------a~efGDrA-----------------ae-  234 (639)
T KOG1130|consen  192 LAQGRAYGNLGNTYY---LLGDFDQAIHFHKLRLEI----------------AQEFGDRA-----------------AE-  234 (639)
T ss_pred             HhhcchhcccCceee---eeccHHHHHHHHHHHHHH----------------HHHhhhHH-----------------HH-
Confidence            111334555666666   778888887765543321                12333311                 11 


Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHH
Q 036703          203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIAN----VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF  278 (365)
Q Consensus       203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~  278 (365)
                          -.++..+|.++.-.|+++.|.+.|.+.+..    -....+       ....+.++..| .-..++.+|+.++.+-+
T Consensus       235 ----RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE-------AQscYSLgNty-tll~e~~kAI~Yh~rHL  302 (639)
T KOG1130|consen  235 ----RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE-------AQSCYSLGNTY-TLLKEVQKAITYHQRHL  302 (639)
T ss_pred             ----HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH-------HHHHHHhhhHH-HHHHHHHHHHHHHHHHH
Confidence                134556777777777788887777775543    111111       11334445554 25567778888877776


Q ss_pred             hccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh-----Ccc-hHHHHHHHHHHHhhccc
Q 036703          279 IFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW-----SPE-NCYAWSKYTELEKSLDE  340 (365)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~~~~~~~~~~~g~  340 (365)
                      .+..+.....-.......++..+...|..++|..+.+..++.     +|. -.....++...-+..|.
T Consensus       303 aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~  370 (639)
T KOG1130|consen  303 AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ  370 (639)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence            663222111011344556777777778888887777776654     221 12344455555444443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.78  E-value=2.2e-06  Score=64.16  Aligned_cols=196  Identities=16%  Similarity=0.077  Sum_probs=131.5

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      ....+..|.+|-+.|-..-|+--|.+++.+.|. +..+.-+|-.+...|+++.|.+.|...++.+|...-+..+.|..+.
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            445667777777888888888888888888888 7788888888888888888888888888888887777777777666


Q ss_pred             hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHH-HHHhccCCCchhHHHHHHHH-HHHH
Q 036703           99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIY-KFALDRIPKGRAEDLYRKFL-AFEK  176 (365)
Q Consensus        99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~-~~~l~~~p~~~~~~~~~~~~-~~~~  176 (365)
                      --|++.-|.+-+.+--+. .|++  ....+|..+..      ..-++.+|..-+ +++....     .+.|-..+ .++.
T Consensus       145 Y~gR~~LAq~d~~~fYQ~-D~~D--PfR~LWLYl~E------~k~dP~~A~tnL~qR~~~~d-----~e~WG~~iV~~yL  210 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQD-DPND--PFRSLWLYLNE------QKLDPKQAKTNLKQRAEKSD-----KEQWGWNIVEFYL  210 (297)
T ss_pred             ecCchHhhHHHHHHHHhc-CCCC--hHHHHHHHHHH------hhCCHHHHHHHHHHHHHhcc-----HhhhhHHHHHHHH
Confidence            678888888887777777 7765  22345554433      233556665544 3443322     12333332 2222


Q ss_pred             HcCCchhhhHHHHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMN-------YDTWFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       177 ~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      ..-.           -...++++.....++       .+.++.+|..+...|+.++|..+|.-++..+--+
T Consensus       211 gkiS-----------~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn  270 (297)
T COG4785         211 GKIS-----------EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN  270 (297)
T ss_pred             hhcc-----------HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence            2211           112333433333333       3578889999999999999999999998875443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=98.78  E-value=1.1e-06  Score=73.35  Aligned_cols=148  Identities=21%  Similarity=0.328  Sum_probs=122.0

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhcCC------------hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHH
Q 036703            7 NAWDRVVTLSPRVDQLWNNYIRMEENLGN------------VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRAR   73 (365)
Q Consensus         7 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~------------~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~   73 (365)
                      .-|++.++.+|.+..+|+.++.+.-..-.            .+.-+.++++|++.+|+ ..++..+.....+..+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45889999999999999999988775532            34567799999999999 789999999999999999999


Q ss_pred             HHHHHHHHhCCcchHHHHHHHHHHHhh---cchHHHHHHHHHHHhhhhcCC--------------hhhHHHHHHHHHHHH
Q 036703           74 HIFERLVQCHPYNLSAWINFADFEMKM---GEVDRARNVYECAVEIFLADD--------------HDEAEQLFVAFAKFE  136 (365)
Q Consensus        74 ~~~~~~l~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~~  136 (365)
                      ..+++++..+|+++.+|..+.++....   -.++..+..|.+++.. ....              ......++..+..+.
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~-L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl  164 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA-LSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL  164 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH-HHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987763   3578889999998886 4322              112234566777778


Q ss_pred             HhccccchhHHHHHHHHHHhcc
Q 036703          137 EMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus       137 ~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      .   ..|..+.|...++-.++.
T Consensus       165 ~---~aG~~E~Ava~~Qa~lE~  183 (321)
T PF08424_consen  165 R---QAGYTERAVALWQALLEF  183 (321)
T ss_pred             H---HCCchHHHHHHHHHHHHH
Confidence            8   899999999999988874

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=3.1e-07  Score=75.36  Aligned_cols=140  Identities=16%  Similarity=0.185  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc------hhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcccc
Q 036703          210 WFDYIRLEERVGNQERVREVYERAIANVPPA------EEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS  283 (365)
Q Consensus       210 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~  283 (365)
                      ...-|..+.+.|++..|...|++++...+..      .....-...+.++++++.++ ..++++..|+....++|...|.
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~-lKl~~~~~Ai~~c~kvLe~~~~  289 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACY-LKLKEYKEAIESCNKVLELDPN  289 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHH-HhhhhHHHHHHHHHHHHhcCCC
Confidence            4456778889999999999999998764422      12222223456788888887 7999999999999999999852


Q ss_pred             CCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccch-hHHHHHHHHHhcCcC
Q 036703          284 FSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDET-ERARAIFELAIAQPI  356 (365)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~-~~A~~~~~~a~~~~~  356 (365)
                            +....+.-|.++...|+++.|+..|++++++.|+|-.+...+..+-.+..+. ++.+++|.+++...+
T Consensus       290 ------N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  290 ------NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             ------chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence                  3666688899999999999999999999999999999999999888877664 455899999987765

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.76  E-value=4.6e-06  Score=62.51  Aligned_cols=201  Identities=11%  Similarity=0.076  Sum_probs=142.5

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF  132 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  132 (365)
                      ....+..|.+|-+.|-..-|+--|.+++.+.|+.+.++..+|..+...|+++.|.+.|+..++. .|..    .-+..+.
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~y----~Ya~lNR  139 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTY----NYAHLNR  139 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCcc----hHHHhcc
Confidence            3455666777778888888999999999999999999999999999999999999999999999 8887    7777777


Q ss_pred             HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHH-HHHHHHHcCCCCHHHHH
Q 036703          133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRL-QYEDGVRKNPMNYDTWF  211 (365)
Q Consensus       133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~l~~~p~~~~~~~  211 (365)
                      |....   -.|++.-|.+-+.+.-+.+|+++...+|.-+.+   ..-++.        +|.. +.+++...   +.+-|-
T Consensus       140 gi~~Y---Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~--------~A~tnL~qR~~~~---d~e~WG  202 (297)
T COG4785         140 GIALY---YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPK--------QAKTNLKQRAEKS---DKEQWG  202 (297)
T ss_pred             ceeee---ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHH--------HHHHHHHHHHHhc---cHhhhh
Confidence            76666   679999999999998888998876677776554   333333        2333 33444433   223333


Q ss_pred             HHH-HHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc
Q 036703          212 DYI-RLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY  281 (365)
Q Consensus       212 ~~~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~  281 (365)
                      ..+ .++  .|+.++ ..+++++.....++.  .+-......+..++..+ ...|+.++|..+|+-++..+
T Consensus       203 ~~iV~~y--LgkiS~-e~l~~~~~a~a~~n~--~~Ae~LTEtyFYL~K~~-l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         203 WNIVEFY--LGKISE-ETLMERLKADATDNT--SLAEHLTETYFYLGKYY-LSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHH--HhhccH-HHHHHHHHhhccchH--HHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHh
Confidence            222 222  333322 345555555443332  22333455667778887 68999999999999998763

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.76  E-value=3.2e-06  Score=61.73  Aligned_cols=156  Identities=10%  Similarity=0.071  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703           36 VAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQ-CHPYNLSAWINFADFEMKMGEVDRARNVYECAV  114 (365)
Q Consensus        36 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  114 (365)
                      ++....-..+.+...|...-...++......|++.+|+..|++++. ...+++.+...+++.....+++..|...+++..
T Consensus        72 P~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~  151 (251)
T COG4700          72 PERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM  151 (251)
T ss_pred             hhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence            3334444444455556666677889999999999999999999987 566788999999999999999999999999999


Q ss_pred             hhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHH
Q 036703          115 EIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRL  194 (365)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  194 (365)
                      +. .|.  ..++...+.++..+.   .+|.+..|+..|+.++...|+.   .....|..+...+|...+..    .+...
T Consensus       152 e~-~pa--~r~pd~~Ll~aR~la---a~g~~a~Aesafe~a~~~ypg~---~ar~~Y~e~La~qgr~~ea~----aq~~~  218 (251)
T COG4700         152 EY-NPA--FRSPDGHLLFARTLA---AQGKYADAESAFEVAISYYPGP---QARIYYAEMLAKQGRLREAN----AQYVA  218 (251)
T ss_pred             hc-CCc--cCCCCchHHHHHHHH---hcCCchhHHHHHHHHHHhCCCH---HHHHHHHHHHHHhcchhHHH----HHHHH
Confidence            88 764  234677888899999   9999999999999999998884   45566677777777544321    13445


Q ss_pred             HHHHHHHcCC
Q 036703          195 QYEDGVRKNP  204 (365)
Q Consensus       195 ~~~~~l~~~p  204 (365)
                      +++.+.+..|
T Consensus       219 v~d~~~r~~~  228 (251)
T COG4700         219 VVDTAKRSRP  228 (251)
T ss_pred             HHHHHHhcch
Confidence            5555555444

>PRK15331 chaperone protein SicA; Provisional

Probab=98.75  E-value=1.3e-07  Score=68.11  Aligned_cols=97  Identities=15%  Similarity=0.185  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA  133 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  133 (365)
                      .....++.-....|++++|..+|+-+...+|.+++.|+.+|.++...+++++|+..|..+... .+++    +...+..|
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~~~d----p~p~f~ag  112 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-LKND----YRPVFFTG  112 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccCC----CCccchHH
Confidence            455677777789999999999999999999999999999999999999999999999999999 8887    88999999


Q ss_pred             HHHHhccccchhHHHHHHHHHHhcc
Q 036703          134 KFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus       134 ~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      .++.   ..|+.+.|+..|+.++..
T Consensus       113 qC~l---~l~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        113 QCQL---LMRKAAKARQCFELVNER  134 (165)
T ss_pred             HHHH---HhCCHHHHHHHHHHHHhC
Confidence            9999   999999999999999984

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.74  E-value=1e-07  Score=60.69  Aligned_cols=61  Identities=23%  Similarity=0.391  Sum_probs=58.3

Q ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           60 IKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      ..++.+.++++.|..++++++..+|+++..|...|.++...|++++|...++++++. .|++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~-~p~~   62 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL-SPDD   62 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH-CCCc
Confidence            467889999999999999999999999999999999999999999999999999999 8886

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.73  E-value=5e-07  Score=62.65  Aligned_cols=99  Identities=20%  Similarity=0.098  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV  130 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  130 (365)
                      .+++..+..+...|+.++|+..|++++...++.   ..+++.++..+...|++++|..++++++.. +|++ +....+..
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~-~~~~~l~~   79 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDD-ELNAALRV   79 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCc-cccHHHHH
Confidence            467888999999999999999999999976543   568999999999999999999999999999 8883 23367777


Q ss_pred             HHHHHHHhccccchhHHHHHHHHHHhc
Q 036703          131 AFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus       131 ~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      .++..+.   ..|+.++|++.+-.++.
T Consensus        80 f~Al~L~---~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   80 FLALALY---NLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHH---HCCCHHHHHHHHHHHHH
Confidence            7888888   99999999999988775

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.70  E-value=2e-05  Score=61.24  Aligned_cols=180  Identities=16%  Similarity=0.092  Sum_probs=118.5

Q ss_pred             chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhH
Q 036703           86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE  165 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  165 (365)
                      .+..|..-|....+.|++++|.+.|+.+... .|.+ +-...+.+.++..+.   +.++++.|+...++.++..|.++..
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-~p~s-~~~~qa~l~l~yA~Y---k~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-HPFS-PYSEQAQLDLAYAYY---KNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-cccHHHHHHHHHHHH---hcccHHHHHHHHHHHHHhCCCCCCh
Confidence            3566777777777788888888888888877 7775 555777777777777   8888888888888888888776533


Q ss_pred             HHHHHHHHHHH---HcCCchhhhHHHHHHHHHHHHHHHHcCCCCH---HH--------------HHHHHHHHHHhCCHHH
Q 036703          166 DLYRKFLAFEK---QYGDREGIEDAIAGKMRLQYEDGVRKNPMNY---DT--------------WFDYIRLEERVGNQER  225 (365)
Q Consensus       166 ~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~---~~--------------~~~~~~~~~~~~~~~~  225 (365)
                      + |..|+....   ...+... +......|...|+..++..|++.   ++              =..++.+|.+.|.+..
T Consensus       108 d-Y~~YlkgLs~~~~i~~~~r-Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~A  185 (254)
T COG4105         108 D-YAYYLKGLSYFFQIDDVTR-DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVA  185 (254)
T ss_pred             h-HHHHHHHHHHhccCCcccc-CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence            2 111211111   1111110 11123468888999999999873   11              1556788899999999


Q ss_pred             HHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703          226 VREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF  280 (365)
Q Consensus       226 A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  280 (365)
                      |..-++++++..|......      ..+..+...+ ...|-.++|...-+ .+..
T Consensus       186 A~nR~~~v~e~y~~t~~~~------eaL~~l~eaY-~~lgl~~~a~~~~~-vl~~  232 (254)
T COG4105         186 AINRFEEVLENYPDTSAVR------EALARLEEAY-YALGLTDEAKKTAK-VLGA  232 (254)
T ss_pred             HHHHHHHHHhccccccchH------HHHHHHHHHH-HHhCChHHHHHHHH-HHHh
Confidence            9999999999988765421      2334444555 36777777765533 3443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.70  E-value=2.9e-05  Score=62.92  Aligned_cols=313  Identities=12%  Similarity=0.031  Sum_probs=195.7

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhhCCC-hH---HHHHHHHHHHHhccHHHHHHHHHH----HHHhCCc--chHHHHHH
Q 036703           24 NNYIRMEENLGNVAGARQIFERWMHWMPD-HE---GWLSYIKFKLRYNEVQRARHIFER----LVQCHPY--NLSAWINF   93 (365)
Q Consensus        24 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~~~~~~~~~A~~~~~~----~l~~~p~--~~~~~~~~   93 (365)
                      +.-|.-+....+.++|+..+.+.+..-.+ ..   .+-.+.......|.++++...--.    +.+.+..  -.+++..+
T Consensus        10 ~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnl   89 (518)
T KOG1941|consen   10 IEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNL   89 (518)
T ss_pred             HHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455667788888888888765444 22   223334566677777765544332    2222221  24567777


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhhhcCCh-hhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----hHHHH
Q 036703           94 ADFEMKMGEVDRARNVYECAVEIFLADDH-DEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR----AEDLY  168 (365)
Q Consensus        94 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~  168 (365)
                      +..+.+.-++.+++.+-+..+.. .+... ..-......++..+.   ..+.++++++.|+.+++....+.    ...++
T Consensus        90 ar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahl---gls~fq~~Lesfe~A~~~A~~~~D~~LElqvc  165 (518)
T KOG1941|consen   90 ARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHL---GLSVFQKALESFEKALRYAHNNDDAMLELQVC  165 (518)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhh---hHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence            77777777888888777766665 33321 112356667888888   89999999999999988543322    24566


Q ss_pred             HHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC----CCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703          169 RKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP----MNY------DTWFDYIRLEERVGNQERVREVYERAIANVP  238 (365)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p----~~~------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  238 (365)
                      ..++.+.-+..+.+        +|.....++..+-.    ++.      -+.+.++..+...|....|.+..+++.+..-
T Consensus       166 v~Lgslf~~l~D~~--------Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal  237 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYE--------KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL  237 (518)
T ss_pred             hhHHHHHHHHHhhh--------HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            67777766665544        55555555554311    221      3456677778889999999999999987632


Q ss_pred             CchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCC-----ccHHHH
Q 036703          239 PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNI-----DPCRKL  313 (365)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~A~~~  313 (365)
                      .+.+...   +......++.+| ...|+.+.|..-|+.|........+-+...+.....+.+.....-.     =.|+++
T Consensus       238 ~~Gdra~---~arc~~~~aDIy-R~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~  313 (518)
T KOG1941|consen  238 QHGDRAL---QARCLLCFADIY-RSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEF  313 (518)
T ss_pred             HhCChHH---HHHHHHHHHHHH-HhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence            2221111   233556688888 6999999999999999887433222111234444445444332222     347888


Q ss_pred             HHHHHhhCcc------hHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703          314 YEKYLEWSPE------NCYAWSKYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       314 ~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                      -+++++....      -..+...++.+|...|..++-...+.++-
T Consensus       314 n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~  358 (518)
T KOG1941|consen  314 NTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAH  358 (518)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            7887776432      23577788899999998887777776654

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.68  E-value=3.7e-06  Score=70.59  Aligned_cols=326  Identities=10%  Similarity=0.030  Sum_probs=192.1

Q ss_pred             HHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHH-HhhCC------C---hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703           12 VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERW-MHWMP------D---HEGWLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus        12 ~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a-l~~~p------~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      ++-+..+++.+...-+..+...|++.+|.+.+... +...|      .   ...|..++.+..+.|.+.-+..+|.++++
T Consensus       232 vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~  311 (696)
T KOG2471|consen  232 VMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR  311 (696)
T ss_pred             hhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence            34444566777888899999999999999987553 22222      2   23678899999999999999999999995


Q ss_pred             -h--------CC---------cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703           82 -C--------HP---------YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK  143 (365)
Q Consensus        82 -~--------~p---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (365)
                       .        .|         .+.++.+..|..+...|+.-.|.++|.++++. +-.+    |.+|..++.+.+|..+.|
T Consensus       312 N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~n----PrlWLRlAEcCima~~~~  386 (696)
T KOG2471|consen  312 NSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRN----PRLWLRLAECCIMALQKG  386 (696)
T ss_pred             HHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcC----cHHHHHHHHHHHHHhhhh
Confidence             1        11         24577888899999999999999999999999 8777    999999999887532222


Q ss_pred             hhHHHHHHHHH---------------------HhccCCCch-hHHHHHHHHHHHHHcCC--------chhhhHHHH----
Q 036703          144 ETDRARCIYKF---------------------ALDRIPKGR-AEDLYRKFLAFEKQYGD--------REGIEDAIA----  189 (365)
Q Consensus       144 ~~~~A~~~~~~---------------------~l~~~p~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~----  189 (365)
                      -.++......+                     ..-..|.+. .+..-..++.+..+.+-        ...+.....    
T Consensus       387 l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~  466 (696)
T KOG2471|consen  387 LLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTK  466 (696)
T ss_pred             hhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccc
Confidence            22222211111                     000011110 01111111111111110        000000000    


Q ss_pred             -------------HHHHHHHHH-HHHcCCCCH-----------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhh
Q 036703          190 -------------GKMRLQYED-GVRKNPMNY-----------DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKR  244 (365)
Q Consensus       190 -------------~~a~~~~~~-~l~~~p~~~-----------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  244 (365)
                                   ....+.=.. .....|+++           .++-..+-+....||.-.|...-++.++...-+.   
T Consensus       467 ~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~---  543 (696)
T KOG2471|consen  467 EGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLSK---  543 (696)
T ss_pred             cCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhh---
Confidence                         000000000 000011111           2334445556678999999998888887644443   


Q ss_pred             HHHHhHHHHHHHHHHHh----hccCChhHHHHHHHHHHh------c-----------------cccCCCcc------hh-
Q 036703          245 YWQRYIYLWINYALYKE----VDAGDLERTRDVYRTLFI------F-----------------YFSFSPRM------EE-  290 (365)
Q Consensus       245 ~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~~~a~~------~-----------------~~~~~~~~------~~-  290 (365)
                             ++..++.+|.    ....+..+|+..+.--+-      .                 +|+....|      ++ 
T Consensus       544 -------~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~  616 (696)
T KOG2471|consen  544 -------IYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEE  616 (696)
T ss_pred             -------HHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHH
Confidence                   2222222221    245566666655543111      1                 01111111      22 


Q ss_pred             --HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc--chHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703          291 --RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP--ENCYAWSKYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       291 --~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                        ..++..++..+.-.|++++|++++..+..+-|  .++.+.....-+....|+...|...+++.-
T Consensus       617 Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~  682 (696)
T KOG2471|consen  617 ARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT  682 (696)
T ss_pred             HhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence              45788889999999999999999999988877  456666666666778899999988887653

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.68  E-value=5.1e-07  Score=70.52  Aligned_cols=103  Identities=13%  Similarity=0.154  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703           56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF  132 (365)
Q Consensus        56 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  132 (365)
                      .+..+.-+...|++..|...|...++..|++   +.+.+-||+++..+|+++.|...|..+++. .|++ +..++.++.+
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~s-~KApdallKl  221 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPKS-PKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-CCCC-CCChHHHHHH
Confidence            4555666667889999999999999999975   577888999999999999999999999999 9986 7789999999


Q ss_pred             HHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          133 AKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      |.+..   +.|+.++|..+|+++++..|...
T Consensus       222 g~~~~---~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         222 GVSLG---RLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHH---HhcCHHHHHHHHHHHHHHCCCCH
Confidence            99999   99999999999999999999864

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.67  E-value=8.3e-06  Score=63.28  Aligned_cols=158  Identities=15%  Similarity=0.044  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH---HHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA---WIN   92 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~   92 (365)
                      +..|+.-|.-.++.|++++|...|+.+...+|.    ..+.+.++..+.+.++++.|+...++.+..+|+++.+   +..
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            566888899999999999999999999999987    5788889999999999999999999999999987653   333


Q ss_pred             HHHHHHh--------hcchHHHHHHHHHHHhhhhcCChhhHH--------------HHHHHHHHHHHhccccchhHHHHH
Q 036703           93 FADFEMK--------MGEVDRARNVYECAVEIFLADDHDEAE--------------QLFVAFAKFEEMGCNCKETDRARC  150 (365)
Q Consensus        93 ~~~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~A~~  150 (365)
                      .|..+..        ..-...|...|+..+.. .|++ .-.+              .-=...|++|.   +.|.+..|..
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS-~Ya~dA~~~i~~~~d~LA~~Em~IaryY~---kr~~~~AA~n  188 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNS-RYAPDAKARIVKLNDALAGHEMAIARYYL---KRGAYVAAIN  188 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHH---HhcChHHHHH
Confidence            3333322        12345688889999999 9987 1111              11235678888   9999999999


Q ss_pred             HHHHHhccCCCch-hHHHHHHHHHHHHHcCCch
Q 036703          151 IYKFALDRIPKGR-AEDLYRKFLAFEKQYGDRE  182 (365)
Q Consensus       151 ~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~  182 (365)
                      -++.+++..|... ..+....+...+...|-.+
T Consensus       189 R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~  221 (254)
T COG4105         189 RFEEVLENYPDTSAVREALARLEEAYYALGLTD  221 (254)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHhCChH
Confidence            9999999877754 2334445556666677654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.66  E-value=2.2e-05  Score=57.51  Aligned_cols=154  Identities=14%  Similarity=0.143  Sum_probs=127.1

Q ss_pred             HhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703           65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE  144 (365)
Q Consensus        65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (365)
                      ..=|++....-..+.+..-| ...-...++....+.|++.+|...|++++.-.+..+    +.+.+.+++..+   ..++
T Consensus        68 q~ldP~R~~Rea~~~~~~Ap-Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d----~a~lLglA~Aqf---a~~~  139 (251)
T COG4700          68 QKLDPERHLREATEELAIAP-TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD----AAMLLGLAQAQF---AIQE  139 (251)
T ss_pred             HhcChhHHHHHHHHHHhhch-hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC----HHHHHHHHHHHH---hhcc
Confidence            33466777777777778888 667788999999999999999999999998756666    999999999999   9999


Q ss_pred             hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHH
Q 036703          145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQE  224 (365)
Q Consensus       145 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  224 (365)
                      +..|...+++..+.+|...+++-...++..+...|.+.        .|...|+.++...|+. .....++.++..+|+..
T Consensus       140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a--------~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~  210 (251)
T COG4700         140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA--------DAESAFEVAISYYPGP-QARIYYAEMLAKQGRLR  210 (251)
T ss_pred             HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch--------hHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchh
Confidence            99999999999998887666677788888888888765        5889999999988765 77788899999999887


Q ss_pred             HHHHHHHHHHh
Q 036703          225 RVREVYERAIA  235 (365)
Q Consensus       225 ~A~~~~~~~~~  235 (365)
                      ++..-+....+
T Consensus       211 ea~aq~~~v~d  221 (251)
T COG4700         211 EANAQYVAVVD  221 (251)
T ss_pred             HHHHHHHHHHH
Confidence            77665555443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=98.66  E-value=2.4e-05  Score=67.36  Aligned_cols=114  Identities=14%  Similarity=0.053  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 036703            6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLVQC   82 (365)
Q Consensus         6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~   82 (365)
                      ......+++.+|.+..+...-+-.....|+..+|...+.+++.+.|.   ..+.+.+|.++.+.|...+|--++..|+..
T Consensus       199 ~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~d  278 (886)
T KOG4507|consen  199 GHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDD  278 (886)
T ss_pred             HHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccC
Confidence            34455667777776555555555556689999999999999999887   467889999999999999999999888887


Q ss_pred             CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703           83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD  120 (365)
Q Consensus        83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  120 (365)
                      .|.-..-+..++.++...|.+......|..+.+. .|.
T Consensus       279 A~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~-~p~  315 (886)
T KOG4507|consen  279 ADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA-RPG  315 (886)
T ss_pred             CccccccceeHHHHHHHHhhhhhhhhhhhhhhcc-Ccc
Confidence            7765666888999999999999888888888887 554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.66  E-value=2e-06  Score=60.64  Aligned_cols=101  Identities=16%  Similarity=0.108  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH---HHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS---AWIN   92 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~   92 (365)
                      +..++.-|.-.++.|++++|++.|+.+....|.    ..+-+.++..+...|+++.|+..+++.++++|.++.   ++..
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            456788899999999999999999999999987    578888999999999999999999999999998754   5666


Q ss_pred             HHHHHHhhcc---------------hHHHHHHHHHHHhhhhcCC
Q 036703           93 FADFEMKMGE---------------VDRARNVYECAVEIFLADD  121 (365)
Q Consensus        93 ~~~~~~~~~~---------------~~~A~~~~~~a~~~~~~~~  121 (365)
                      .|..+..+..               ...|...|++.++. .|++
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~-yP~S  132 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR-YPNS  132 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH-CcCC
Confidence            6766666654               77899999999999 9986

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.61  E-value=2.6e-06  Score=66.66  Aligned_cols=98  Identities=17%  Similarity=0.180  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHH
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFAD   95 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~   95 (365)
                      .+.-+--+...|++..|...|..-++..|+    +.+.+-|+.++..+|+++.|..+|..+.+..|++   ++..+.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            455566677889999999999999999998    6788889999999999999999999999988765   688999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           96 FEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        96 ~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      +..+.|+.++|...|+++++. .|..
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~-YP~t  248 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKR-YPGT  248 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHH-CCCC
Confidence            999999999999999999999 9987

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.59  E-value=1.1e-06  Score=64.11  Aligned_cols=85  Identities=18%  Similarity=0.221  Sum_probs=48.6

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc---
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGN----------VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN---   67 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~---   67 (365)
                      |+.|++.++.....+|.+++.+...|..+..+.+          +++|+.-|+.|+.++|+ ..+...+|..+..++   
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            5678888888888888888887777766665432          33455566666666666 455555555554433   


Q ss_pred             --------cHHHHHHHHHHHHHhCCcc
Q 036703           68 --------EVQRARHIFERLVQCHPYN   86 (365)
Q Consensus        68 --------~~~~A~~~~~~~l~~~p~~   86 (365)
                              .+++|...|+++...+|++
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                    2444555555555555533

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.59  E-value=6.3e-05  Score=61.06  Aligned_cols=303  Identities=11%  Similarity=0.084  Sum_probs=184.1

Q ss_pred             hhhHHHHHHHHHHhCCCchHH---HHHHHHHHHhcCChhHHHHHH----HHHHhhCCC---hHHHHHHHHHHHHhccHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQL---WNNYIRMEENLGNVAGARQIF----ERWMHWMPD---HEGWLSYIKFKLRYNEVQR   71 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~---~~~~~~~~~~~g~~~~A~~~~----~~al~~~p~---~~~~~~~~~~~~~~~~~~~   71 (365)
                      +++|+....+.+....+...=   +-.++......|.++++...-    +.+.+...+   -.++..+++.+.+.-++.+
T Consensus        22 ~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~k  101 (518)
T KOG1941|consen   22 TEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHK  101 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            345555555555443332222   222334455556665544432    333333333   3466677777777778888


Q ss_pred             HHHHHHHHHHhCCcc-----hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh--hHHHHHHHHHHHHHhccccch
Q 036703           72 ARHIFERLVQCHPYN-----LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD--EAEQLFVAFAKFEEMGCNCKE  144 (365)
Q Consensus        72 A~~~~~~~l~~~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  144 (365)
                      ++.+-...+......     ......++..+...+.++++++.|+.|++. ...+.+  -...+...++.++.   ...+
T Consensus       102 t~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~-A~~~~D~~LElqvcv~Lgslf~---~l~D  177 (518)
T KOG1941|consen  102 TISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRY-AHNNDDAMLELQVCVSLGSLFA---QLKD  177 (518)
T ss_pred             HHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH-hhccCCceeeeehhhhHHHHHH---HHHh
Confidence            887776666543322     245667888888999999999999999987 433201  11467889999999   9999


Q ss_pred             hHHHHHHHHHHhccCCCch--------hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc------CCCCHHHH
Q 036703          145 TDRARCIYKFALDRIPKGR--------AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK------NPMNYDTW  210 (365)
Q Consensus       145 ~~~A~~~~~~~l~~~p~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~------~p~~~~~~  210 (365)
                      +++|.-+..++.....+-.        .....+.++..+...|...        .|.+..+.+.++      .|-.....
T Consensus       178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lg--------dA~e~C~Ea~klal~~Gdra~~arc~  249 (518)
T KOG1941|consen  178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLG--------DAMECCEEAMKLALQHGDRALQARCL  249 (518)
T ss_pred             hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccc--------cHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            9999999998887543211        1122233334444555543        355566555542      12234567


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC-----hhHHHHHHHHHHhccccCC
Q 036703          211 FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD-----LERTRDVYRTLFIFYFSFS  285 (365)
Q Consensus       211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~~~a~~~~~~~~  285 (365)
                      ..++++|...|+.+.|..-|+.+......-.+ ++  ..+.+....+...+ ...-     -=+|+++-++++++....+
T Consensus       250 ~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gd-rm--gqv~al~g~Akc~~-~~r~~~k~~~Crale~n~r~levA~~IG  325 (518)
T KOG1941|consen  250 LCFADIYRSRGDLERAFRRYEQAMGTMASLGD-RM--GQVEALDGAAKCLE-TLRLQNKICNCRALEFNTRLLEVASSIG  325 (518)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHHHHhhhhh-hH--HHHHHHHHHHHHHH-HHHHhhcccccchhHHHHHHHHHHHHhh
Confidence            78999999999999999999999876332111 00  01233444444332 1111     2347778788877753333


Q ss_pred             CcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703          286 PRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW  320 (365)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  320 (365)
                      .-+.--.+...++.+|...|.-++-.+.+.++-+.
T Consensus       326 ~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~  360 (518)
T KOG1941|consen  326 AKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHEC  360 (518)
T ss_pred             hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            21112456778888998889988888888887554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.57  E-value=2.6e-06  Score=62.87  Aligned_cols=98  Identities=12%  Similarity=0.026  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF   96 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~   96 (365)
                      ...=|.-++..|++++|..-|..|+..+|.      .-++...+.+..+++..+.|+.-..++++++|....+..+.|..
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            445577788899999999999999999998      23566677888899999999999999999999999999999999


Q ss_pred             HHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           97 EMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        97 ~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      |.+...+++|+.-|+++++. .|..
T Consensus       178 yek~ek~eealeDyKki~E~-dPs~  201 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKKILES-DPSR  201 (271)
T ss_pred             HHhhhhHHHHHHHHHHHHHh-Ccch
Confidence            99999999999999999999 8876

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.56  E-value=3.4e-06  Score=59.53  Aligned_cols=106  Identities=14%  Similarity=0.129  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF  129 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  129 (365)
                      +..+..-|.-....|++++|++.|+.+....|..   ..+.+.++..+.+.|++++|+..+++.++. .|.+ +..+-++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-hP~h-p~vdYa~   87 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-HPTH-PNVDYAY   87 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC-CCccHHH
Confidence            5667778888899999999999999999988854   578899999999999999999999999999 9996 6667777


Q ss_pred             HHHHHHHHhccccch---------------hHHHHHHHHHHhccCCCch
Q 036703          130 VAFAKFEEMGCNCKE---------------TDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       130 ~~~~~~~~~~~~~~~---------------~~~A~~~~~~~l~~~p~~~  163 (365)
                      +..|..+.   .+..               ...|...|++.++..|++.
T Consensus        88 Y~~gL~~~---~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   88 YMRGLSYY---EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHH---HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            77776666   4443               6788888888888888864

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=98.55  E-value=1e-05  Score=67.56  Aligned_cols=156  Identities=21%  Similarity=0.326  Sum_probs=113.7

Q ss_pred             HHHHHhhhhcCChhhHHHHHHHHHHHHHhcc---------ccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCC
Q 036703          110 YECAVEIFLADDHDEAEQLFVAFAKFEEMGC---------NCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD  180 (365)
Q Consensus       110 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  180 (365)
                      |++.++. .|.+    ...|+.++.+.....         ...-.+..+.+|++|++.+|.+  ..++..+........+
T Consensus         8 l~~~v~~-~P~d----i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~--~~L~l~~l~~~~~~~~   80 (321)
T PF08424_consen    8 LNRRVRE-NPHD----IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDS--ERLLLGYLEEGEKVWD   80 (321)
T ss_pred             HHHHHHh-Cccc----HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCC
Confidence            4455555 5555    666666655443000         1223567888999999999976  6788888887777665


Q ss_pred             chhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhcCCCch---------hhhHHHH
Q 036703          181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER---VGNQERVREVYERAIANVPPAE---------EKRYWQR  248 (365)
Q Consensus       181 ~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~p~~~---------~~~~~~~  248 (365)
                      .+        +....+++++..+|++..+|..+.+....   .-.++..+..|.+++.......         ....-..
T Consensus        81 ~~--------~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~  152 (321)
T PF08424_consen   81 SE--------KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEF  152 (321)
T ss_pred             HH--------HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHH
Confidence            44        46677999999999999999999998654   3468899999999987633221         1123345


Q ss_pred             hHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc
Q 036703          249 YIYLWINYALYKEVDAGDLERTRDVYRTLFIFY  281 (365)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~  281 (365)
                      .+.+.+.+..++ .+.|-.+.|..+++..++.+
T Consensus       153 ~l~v~~r~~~fl-~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  153 MLYVFLRLCRFL-RQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHHHH-HHCCchHHHHHHHHHHHHHH
Confidence            677888899997 69999999999999999884

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.53  E-value=1.7e-07  Score=52.52  Aligned_cols=43  Identities=19%  Similarity=0.318  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHH
Q 036703          291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTE  333 (365)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  333 (365)
                      |..+..++..+...|++++|+++|+++++.+|+++.+|..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3578899999999999999999999999999999999999875

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.52  E-value=5.2e-07  Score=58.22  Aligned_cols=72  Identities=28%  Similarity=0.353  Sum_probs=60.1

Q ss_pred             CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhh--hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703           84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEIF--LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus        84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      |+-..++..+|.++...|++++|++.|+++++..  .+++++....++..+|.++.   ..|++++|+++++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~---~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY---RLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhh
Confidence            5567789999999999999999999999999761  33334455788999999999   999999999999999864

...

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.51  E-value=3.6e-07  Score=51.23  Aligned_cols=42  Identities=21%  Similarity=0.462  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD   95 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~   95 (365)
                      .+|..++..+...|++++|+.+|+++++.+|+++.+|..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            355666666666666666666666666666666666665553

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.43  E-value=1.1e-05  Score=55.23  Aligned_cols=90  Identities=14%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHhhc
Q 036703           27 IRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN----LSAWINFADFEMKMG  101 (365)
Q Consensus        27 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~  101 (365)
                      |......|+.+.|++.|.+++.+.|. ..++...+..+.-+|+.++|..-++++++...+.    ...+...|.+|...|
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            34444556666666666666666666 5666666666666666666666666666654432    234556666666666


Q ss_pred             chHHHHHHHHHHHhh
Q 036703          102 EVDRARNVYECAVEI  116 (365)
Q Consensus       102 ~~~~A~~~~~~a~~~  116 (365)
                      +.+.|+.-|+.+.+.
T Consensus       130 ~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  130 NDDAARADFEAAAQL  144 (175)
T ss_pred             chHHHHHhHHHHHHh
Confidence            666666666666544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.42  E-value=7.3e-06  Score=56.07  Aligned_cols=97  Identities=21%  Similarity=0.118  Sum_probs=85.4

Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHh
Q 036703           59 YIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM  138 (365)
Q Consensus        59 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  138 (365)
                      -+-.....|+.+.|++.|.+++...|..+.++.+.++.+.-+|+.++|++-++++++. .++........+...|.+|. 
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL-ag~~trtacqa~vQRg~lyR-  126 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL-AGDQTRTACQAFVQRGLLYR-  126 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh-cCccchHHHHHHHHHHHHHH-
Confidence            3455667899999999999999999999999999999999999999999999999999 65543445678888999999 


Q ss_pred             ccccchhHHHHHHHHHHhccC
Q 036703          139 GCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus       139 ~~~~~~~~~A~~~~~~~l~~~  159 (365)
                        .+|+-+.|+.-|+.+-+.-
T Consensus       127 --l~g~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  127 --LLGNDDAARADFEAAAQLG  145 (175)
T ss_pred             --HhCchHHHHHhHHHHHHhC
Confidence              9999999999999887643

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.42  E-value=4e-06  Score=70.61  Aligned_cols=69  Identities=13%  Similarity=0.028  Sum_probs=63.5

Q ss_pred             hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h---HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 036703           15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H---EGWLSYIKFKLRYNEVQRARHIFERLVQCH   83 (365)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~   83 (365)
                      .+|+++.+|..+|..+...|++++|+..|+++++++|+ .   .+|..++.++..+|++++|+..++++++..
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            46889999999999999999999999999999999999 4   359999999999999999999999999973

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=0.00044  Score=53.82  Aligned_cols=137  Identities=12%  Similarity=0.118  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh
Q 036703          211 FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE  290 (365)
Q Consensus       211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~  290 (365)
                      +.+..++...|++.-....+.+.++.+|....        .+...++..- ++.|+.+.|...|++.-+.......+--.
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p--------~L~s~Lgr~~-MQ~GD~k~a~~yf~~vek~~~kL~~~q~~  251 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP--------QLLSGLGRIS-MQIGDIKTAEKYFQDVEKVTQKLDGLQGK  251 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccH--------HHHHHHHHHH-HhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence            33444444445555555555555555433221        1333344442 45555555555555443332111111001


Q ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      .-+..+.+-++...+++.+|...|.+++..+|.++.+-++-+.+.+-.|+...|.+..+.++...|
T Consensus       252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            223333344444555555555555555555555555555555555555665566666555555555

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.40  E-value=0.0013  Score=58.87  Aligned_cols=34  Identities=15%  Similarity=0.130  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch
Q 036703          291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN  324 (365)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  324 (365)
                      +++...++.+....|++++|-+.|-.+++++.-|
T Consensus       995 ~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen  995 GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred             ccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence            6778889999999999999999999999887543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.36  E-value=1.4e-06  Score=56.21  Aligned_cols=64  Identities=20%  Similarity=0.280  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHhh----C---cchHHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703          291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEW----S---PENCYAWSKYTELEKSLDETERARAIFELAIAQ  354 (365)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  354 (365)
                      ...+..+|.++...|++++|+.+|+++++.    .   |....++.++|.++...|++++|.+.++++++.
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            567889999999999999999999999966    2   223568889999999999999999999999864

...

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.36  E-value=0.00098  Score=57.06  Aligned_cols=149  Identities=19%  Similarity=0.235  Sum_probs=109.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc
Q 036703          203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF  282 (365)
Q Consensus       203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~  282 (365)
                      .......|..++.+....|.++.|...+.++....+.....     ...+.+..+.+. ...|+..+|+..++..+....
T Consensus       142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----~~~v~~e~akll-w~~g~~~~Ai~~L~~~~~~~~  215 (352)
T PF02259_consen  142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----LPRVFLEYAKLL-WAQGEQEEAIQKLRELLKCRL  215 (352)
T ss_pred             hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----CcchHHHHHHHH-HHcCCHHHHHHHHHHHHHHHh
Confidence            34456789999999999999999999999998865222100     022666778877 588999999999988887211


Q ss_pred             cCC-------------------------Ccc-hh--HHHHHHHHHHHHHh------CCCccHHHHHHHHHhhCcchHHHH
Q 036703          283 SFS-------------------------PRM-EE--RRIFKKYIEMELCL------GNIDPCRKLYEKYLEWSPENCYAW  328 (365)
Q Consensus       283 ~~~-------------------------~~~-~~--~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~  328 (365)
                      ...                         ... ..  ..++..+|......      +..+++...|..+++.+|+....|
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~  295 (352)
T PF02259_consen  216 SKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAW  295 (352)
T ss_pred             hhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHH
Confidence            100                         000 01  56677777777777      889999999999999999999999


Q ss_pred             HHHHHHHhhccc-----------------hhHHHHHHHHHhcCcCC
Q 036703          329 SKYTELEKSLDE-----------------TERARAIFELAIAQPIL  357 (365)
Q Consensus       329 ~~~~~~~~~~g~-----------------~~~A~~~~~~a~~~~~~  357 (365)
                      ..++.++...-+                 ...|+..|-+++...+.
T Consensus       296 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  296 HSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            999987765421                 24577888888887774

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.32  E-value=2.5e-05  Score=57.14  Aligned_cols=85  Identities=15%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc----------cHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc---
Q 036703           36 VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN----------EVQRARHIFERLVQCHPYNLSAWINFADFEMKMG---  101 (365)
Q Consensus        36 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~----------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---  101 (365)
                      ++.|++.++.....+|. .+.++.+|..+....          -+++|+.-|++++.++|+...++..+|..+...+   
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            67899999999999999 788888877665443          3567888899999999999999999999988765   


Q ss_pred             --------chHHHHHHHHHHHhhhhcCC
Q 036703          102 --------EVDRARNVYECAVEIFLADD  121 (365)
Q Consensus       102 --------~~~~A~~~~~~a~~~~~~~~  121 (365)
                              .+++|..+|++++.. .|.+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~-~P~n  113 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDE-DPNN  113 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH--TT-
T ss_pred             CChHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence                    367788888888888 8876

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.31  E-value=7.1e-07  Score=46.53  Aligned_cols=34  Identities=21%  Similarity=0.385  Sum_probs=30.2

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHH
Q 036703            8 AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQ   41 (365)
Q Consensus         8 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~   41 (365)
                      +|+++++.+|+++.+|..+|.++...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999998863

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.31  E-value=2e-05  Score=58.40  Aligned_cols=96  Identities=10%  Similarity=0.124  Sum_probs=82.9

Q ss_pred             ChhhHHHHHHHHHHhCCCc-----hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRV-----DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARH   74 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~   74 (365)
                      .|+.|...|..||...|..     ..++...|.+.++++..+.|+.-+.++++++|. ..+....+..|.+...++.|+.
T Consensus       110 dyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eeale  189 (271)
T KOG4234|consen  110 DYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALE  189 (271)
T ss_pred             cHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHH
Confidence            4788999999999999875     345777888999999999999999999999999 7888888999999999999999


Q ss_pred             HHHHHHHhCCcchHHHHHHHHH
Q 036703           75 IFERLVQCHPYNLSAWINFADF   96 (365)
Q Consensus        75 ~~~~~l~~~p~~~~~~~~~~~~   96 (365)
                      -|.+++..+|....+--..+.+
T Consensus       190 DyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  190 DYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHHHHHHhCcchHHHHHHHHhc
Confidence            9999999999666555444443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.30  E-value=6.1e-07  Score=46.77  Aligned_cols=33  Identities=27%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             HHHHHHhhCcchHHHHHHHHHHHhhccchhHHH
Q 036703          313 LYEKYLEWSPENCYAWSKYTELEKSLDETERAR  345 (365)
Q Consensus       313 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~  345 (365)
                      +|+++++.+|+++.+|.++|.++...|+.++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            478999999999999999999999999999986

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=5.2e-05  Score=60.90  Aligned_cols=152  Identities=14%  Similarity=0.011  Sum_probs=119.9

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh-CCCh----HHHHHHHHHHHHhccHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW-MPDH----EGWLSYIKFKLRYNEVQRARHIF   76 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~~~~~~~~~~~~~A~~~~   76 (365)
                      +.+|-...++.+..+|.+..+|..--..+...|+.+.-+..+++.+.. +|+.    -+--.|+-.+...|-+++|.+.-
T Consensus       119 ~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A  198 (491)
T KOG2610|consen  119 HHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQA  198 (491)
T ss_pred             ccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHH
Confidence            456777889999999999999988888899999999999999999865 7762    22335666778899999999999


Q ss_pred             HHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703           77 ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL  156 (365)
Q Consensus        77 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  156 (365)
                      +++++++|.+.-+....+.++...|++.++.+...+.-.. -....--...-|-..+.++.   ..+.++.|+++|.+-+
T Consensus       199 ~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~i---E~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  199 DRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHI---EGAEYEKALEIYDREI  274 (491)
T ss_pred             HhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhh---cccchhHHHHHHHHHH
Confidence            9999999999888889999999999999999988776544 22210111223445677788   8899999999998755


Q ss_pred             c
Q 036703          157 D  157 (365)
Q Consensus       157 ~  157 (365)
                      -
T Consensus       275 ~  275 (491)
T KOG2610|consen  275 W  275 (491)
T ss_pred             H
Confidence            3

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.28  E-value=5.6e-06  Score=69.78  Aligned_cols=67  Identities=18%  Similarity=0.056  Sum_probs=62.7

Q ss_pred             CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH---HHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           50 MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA---WINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        50 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      +|+ ...|..++..+...|++++|+..|+++++.+|++..+   |.++|.+|..+|+.++|+..++++++.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345 6799999999999999999999999999999998854   999999999999999999999999997

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.26  E-value=0.00088  Score=59.85  Aligned_cols=293  Identities=14%  Similarity=0.097  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHH------Hh----hCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERW------MH----WMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS   88 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~a------l~----~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~   88 (365)
                      .+|-.-|+++.+..++++|.++|++.      ++    ..|.  ..+-..++..+...|+++.|+..|-.+-.       
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~-------  734 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-------  734 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-------
Confidence            34445566666666777777766542      22    2454  33444556666677777777776654321       


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHH
Q 036703           89 AWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLY  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  168 (365)
                       ............++.+|+.+++..-.. ..     ....+-..+.-|.   ..|+++.|.++|.++          .++
T Consensus       735 -~~kaieaai~akew~kai~ildniqdq-k~-----~s~yy~~iadhya---n~~dfe~ae~lf~e~----------~~~  794 (1636)
T KOG3616|consen  735 -LIKAIEAAIGAKEWKKAISILDNIQDQ-KT-----ASGYYGEIADHYA---NKGDFEIAEELFTEA----------DLF  794 (1636)
T ss_pred             -HHHHHHHHhhhhhhhhhHhHHHHhhhh-cc-----ccccchHHHHHhc---cchhHHHHHHHHHhc----------chh
Confidence             122223333455666666666554433 11     1334445556666   777888888777653          233


Q ss_pred             HHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHH-------------HHhCCHHHHHHHHHHHH
Q 036703          169 RKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN-YDTWFDYIRLE-------------ERVGNQERVREVYERAI  234 (365)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~-~~~~~~~~~~~-------------~~~~~~~~A~~~~~~~~  234 (365)
                      ...+.++-+.|.+..        |..+-+++.  .|.. ...+..-++-.             ...|.+++|+..|.+.-
T Consensus       795 ~dai~my~k~~kw~d--------a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~  864 (1636)
T KOG3616|consen  795 KDAIDMYGKAGKWED--------AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHG  864 (1636)
T ss_pred             HHHHHHHhccccHHH--------HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhC
Confidence            334444444444331        222221111  1211 12222222222             23344455555554321


Q ss_pred             hcCCCchhhhHHH-----HhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc-----ccCCCcchh--------------
Q 036703          235 ANVPPAEEKRYWQ-----RYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY-----FSFSPRMEE--------------  290 (365)
Q Consensus       235 ~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-----~~~~~~~~~--------------  290 (365)
                      .   ++...++..     ........++.-++ ..|+...|...|-++-...     ...+.+|.+              
T Consensus       865 ~---~ddmirlv~k~h~d~l~dt~~~f~~e~e-~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~  940 (1636)
T KOG3616|consen  865 L---DDDMIRLVEKHHGDHLHDTHKHFAKELE-AEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAE  940 (1636)
T ss_pred             c---chHHHHHHHHhChhhhhHHHHHHHHHHH-hccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHH
Confidence            0   010000000     01234455565554 6677776666554442220     111222200              


Q ss_pred             ----------------HHHHHHHH------HHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHH
Q 036703          291 ----------------RRIFKKYI------EMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIF  348 (365)
Q Consensus       291 ----------------~~~~~~~~------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~  348 (365)
                                      ..+.+..|      ++....+-|+-|..+-.-+.+  ...+.+...++.++...|++++|.+.|
T Consensus       941 k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen  941 KHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred             HHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhh
Confidence                            11111111      111223334444443333332  235678889999999999999999999


Q ss_pred             HHHhcCcC
Q 036703          349 ELAIAQPI  356 (365)
Q Consensus       349 ~~a~~~~~  356 (365)
                      -.+++++.
T Consensus      1019 veaiklnt 1026 (1636)
T KOG3616|consen 1019 VEAIKLNT 1026 (1636)
T ss_pred             HHHhhccc
Confidence            99998875

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=0.00032  Score=54.55  Aligned_cols=147  Identities=12%  Similarity=0.154  Sum_probs=108.3

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC-CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHH
Q 036703           57 LSYIKFKLRYNEVQRARHIFERLVQCH-PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFA  133 (365)
Q Consensus        57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~  133 (365)
                      ..++.+..-.|++.-....+.+.++.+ |.++.+...++.+.++.|+.+.|...|++.-+. ...-  ......+..+.+
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhh
Confidence            345666777889999999999999988 667889999999999999999999999976654 3211  112256677888


Q ss_pred             HHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH---HHH
Q 036703          134 KFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY---DTW  210 (365)
Q Consensus       134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~---~~~  210 (365)
                      .++.   .++++.+|...|.+++..+|.+....--.+++.++  .|+        ...|++..+.+++..|...   .+.
T Consensus       260 ~i~l---g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~--------l~DAiK~~e~~~~~~P~~~l~es~~  326 (366)
T KOG2796|consen  260 FLHL---GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGK--------LKDALKQLEAMVQQDPRHYLHESVL  326 (366)
T ss_pred             hhee---cccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHH--------HHHHHHHHHHHhccCCccchhhhHH
Confidence            8888   99999999999999999888864222223333333  333        2359999999999999753   444


Q ss_pred             HHHHHHH
Q 036703          211 FDYIRLE  217 (365)
Q Consensus       211 ~~~~~~~  217 (365)
                      +++..++
T Consensus       327 ~nL~tmy  333 (366)
T KOG2796|consen  327 FNLTTMY  333 (366)
T ss_pred             HHHHHHH
Confidence            5555443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.001  Score=50.95  Aligned_cols=187  Identities=16%  Similarity=0.111  Sum_probs=115.7

Q ss_pred             HHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------CcchHHHHHHHHHHHhhcch
Q 036703           30 EENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCH------PYNLSAWINFADFEMKMGEV  103 (365)
Q Consensus        30 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~~~~~~~~~~~~  103 (365)
                      +.-.+++++|..+|.++-..             +....+++.|-..|.++-..+      .+....+...+.+|.+ ++.
T Consensus        24 fgg~~k~eeAadl~~~Aan~-------------yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~   89 (288)
T KOG1586|consen   24 FGGSNKYEEAAELYERAANM-------------YKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDP   89 (288)
T ss_pred             cCCCcchHHHHHHHHHHHHH-------------HHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cCh
Confidence            33445788999999888433             333333333333333333211      1134455666666655 489


Q ss_pred             HHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHhccCCCchh----HHHHHHHHHHHH
Q 036703          104 DRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNC-KETDRARCIYKFALDRIPKGRA----EDLYRKFLAFEK  176 (365)
Q Consensus       104 ~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~  176 (365)
                      ++|..++++++++ +.+.  .......+..+|.+|.   .. .++++|+..|+++-.-......    ...+...+.+..
T Consensus        90 ~eAv~cL~~aieI-yt~~Grf~~aAk~~~~iaEiyE---sdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa  165 (288)
T KOG1586|consen   90 EEAVNCLEKAIEI-YTDMGRFTMAAKHHIEIAEIYE---SDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA  165 (288)
T ss_pred             HHHHHHHHHHHHH-HHhhhHHHHHHhhhhhHHHHHh---hhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence            9999999999988 6543  1112344557888887   44 8899999999998765443221    123333344433


Q ss_pred             HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703          177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD-------TWFDYIRLEERVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       177 ~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                      ..+.        +.+|+.+|++.....-++.-       -++.-|.++.-..+.-.+...+++-...+|.-.+
T Consensus       166 ~leq--------Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  166 QLEQ--------YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHH--------HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence            4443        34799999998876555532       2445566666668888888889998888887543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.25  E-value=2.2e-06  Score=68.70  Aligned_cols=228  Identities=11%  Similarity=-0.080  Sum_probs=136.4

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703           57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE  136 (365)
Q Consensus        57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  136 (365)
                      ...|+-|.++|.|++|+.+|.+++..+|.++..+.+.+..|.+.+.+..|..-.+.++.. ....    ..+|...+..-
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d~~Y----~KAYSRR~~AR  175 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-DKLY----VKAYSRRMQAR  175 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-hHHH----HHHHHHHHHHH
Confidence            445667788899999999999999999999999999999999999999999988888887 4332    56666667666


Q ss_pred             HhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHH-----
Q 036703          137 EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWF-----  211 (365)
Q Consensus       137 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~-----  211 (365)
                      .   ..|...+|.+-++.++...|.+  .++-..+..+..    ..         -..+..   +..|....+..     
T Consensus       176 ~---~Lg~~~EAKkD~E~vL~LEP~~--~ELkK~~a~i~S----l~---------E~~I~~---KsT~G~~~A~Q~~~Q~  234 (536)
T KOG4648|consen  176 E---SLGNNMEAKKDCETVLALEPKN--IELKKSLARINS----LR---------ERKIAT---KSTPGFTPARQGMIQI  234 (536)
T ss_pred             H---HHhhHHHHHHhHHHHHhhCccc--HHHHHHHHHhcc----hH---------hhhHHh---hcCCCCCccccchhhh
Confidence            7   7889999999999999998886  334443333211    00         001111   11122111111     


Q ss_pred             ----HHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCc
Q 036703          212 ----DYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR  287 (365)
Q Consensus       212 ----~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~  287 (365)
                          .-|..+...|.++.++..+-+.+..+..+..         +-.. +..+ ....+++.++.-.-+++...++....
T Consensus       235 l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~---------L~~~-~~~~-~KI~~~~~~~~~~~~~~~~~~s~~~~  303 (536)
T KOG4648|consen  235 LPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQ---------LRIS-DEDI-DKIFNSNCGIIEEVKKTNPKPTPMPD  303 (536)
T ss_pred             ccccCcchhhhhhhccccceeEeeccccccCcccc---------Cccc-HHHH-HHHhhcchhHHHHHHhcCCCCCcCcc
Confidence                1233344556677777777666665544421         1111 1111 13334455555445555444332221


Q ss_pred             chhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHH
Q 036703          288 MEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYA  327 (365)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  327 (365)
                      +      ..-+....-.|...++...++.++.+.|.+-..
T Consensus       304 ~------s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~  337 (536)
T KOG4648|consen  304 T------SGPPKAETIAKTSKEVKPTKQTAVKVAPAVETP  337 (536)
T ss_pred             c------CCCchhHHHHhhhhhcCcchhheeeeccccccc
Confidence            1      111122222456677777788888777765443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.23  E-value=0.0002  Score=60.96  Aligned_cols=117  Identities=12%  Similarity=0.075  Sum_probs=77.5

Q ss_pred             hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc-CCCchhH
Q 036703           87 LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR-IPKGRAE  165 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~  165 (365)
                      ..+-..+|.+..+.|+.++|++.+...++. +|..  +...+..++...+.   ..+.+.++..++.+-=+. .|.+  +
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke-~p~~--~~l~IrenLie~LL---elq~Yad~q~lL~kYdDi~lpkS--A  330 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKE-FPNL--DNLNIRENLIEALL---ELQAYADVQALLAKYDDISLPKS--A  330 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhh-CCcc--chhhHHHHHHHHHH---hcCCHHHHHHHHHHhccccCCch--H
Confidence            345567899999999999999999999998 7752  23668889999999   999999999999885332 2333  3


Q ss_pred             HHHHHHHHHH-HHcCCchhhh-------HHHHHHHHHHHHHHHHcCCCCHHHHH
Q 036703          166 DLYRKFLAFE-KQYGDREGIE-------DAIAGKMRLQYEDGVRKNPMNYDTWF  211 (365)
Q Consensus       166 ~~~~~~~~~~-~~~~~~~~~~-------~~~~~~a~~~~~~~l~~~p~~~~~~~  211 (365)
                      .+.+.-+.+. +..++.-..+       ..-...|.+.+.++++.||.-+.-++
T Consensus       331 ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  331 TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            3333222222 2222210000       00112477889999999998766543

The molecular function of this protein is uncertain.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=0.0026  Score=54.13  Aligned_cols=347  Identities=11%  Similarity=0.090  Sum_probs=190.0

Q ss_pred             ChhhHHHHHHHHHHh---CCCch----HHHHHHHHHHHhcC-ChhHHHHHHHHHHhhCCCh-----HHHHHHHHHHHHhc
Q 036703            1 FIDHGRNAWDRVVTL---SPRVD----QLWNNYIRMEENLG-NVAGARQIFERWMHWMPDH-----EGWLSYIKFKLRYN   67 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~---~p~~~----~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~   67 (365)
                      |++.|+..++++..+   -|+..    .+...++.++.... .+..|+..+.++++...+.     .....++.+.....
T Consensus        62 N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idk  141 (629)
T KOG2300|consen   62 NVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDK  141 (629)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhc
Confidence            678899999999876   35542    45677888888877 7889999999999887663     44467788888888


Q ss_pred             cHHHHHHHHHHHHH-hCCc---chHHHHHHH--HHHHh---hcchHHHHHHHHHHHhhhhcCChhhH-------------
Q 036703           68 EVQRARHIFERLVQ-CHPY---NLSAWINFA--DFEMK---MGEVDRARNVYECAVEIFLADDHDEA-------------  125 (365)
Q Consensus        68 ~~~~A~~~~~~~l~-~~p~---~~~~~~~~~--~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~-------------  125 (365)
                      |+..|.+.+.-... .+|-   ...+.+.+.  .+...   ..+.+.+......+.+. ...+..+.             
T Consensus       142 D~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~  220 (629)
T KOG2300|consen  142 DFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLS  220 (629)
T ss_pred             cchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHH
Confidence            99888887543211 1110   011111111  11111   11222223333333332 21110000             


Q ss_pred             -------------------------------------------HHHHHHH----HHHHH----hccccchhHHHHHHHHH
Q 036703          126 -------------------------------------------EQLFVAF----AKFEE----MGCNCKETDRARCIYKF  154 (365)
Q Consensus       126 -------------------------------------------~~~~~~~----~~~~~----~~~~~~~~~~A~~~~~~  154 (365)
                                                                 ...|.-.    +.+|.    ...-.|-+++|.++-++
T Consensus       221 yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe  300 (629)
T KOG2300|consen  221 YYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDE  300 (629)
T ss_pred             HHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHH
Confidence                                                       0011000    00010    00123555555555555


Q ss_pred             HhccC---CCch-hHHHHHHH--------HHHHHHcCCchhhhHHHHHHHHHHHHHHH---HcCCC-------CHHHHHH
Q 036703          155 ALDRI---PKGR-AEDLYRKF--------LAFEKQYGDREGIEDAIAGKMRLQYEDGV---RKNPM-------NYDTWFD  212 (365)
Q Consensus       155 ~l~~~---p~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~l---~~~p~-------~~~~~~~  212 (365)
                      +|...   |..+ ...+...+        +....-.|++.        +|......+.   ...|.       .+.+...
T Consensus       301 ~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~--------~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~L  372 (629)
T KOG2300|consen  301 AIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYV--------EALEEIVDMKNWCTRFPTPLLLRAHEAQIHML  372 (629)
T ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHhCCchHHHHHhHHHHHHH
Confidence            55421   1111 11111111        11222234443        3333333333   24454       2345666


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC--cchh
Q 036703          213 YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP--RMEE  290 (365)
Q Consensus       213 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~--~~~~  290 (365)
                      +|......+-++.|...|..+++........      ..+-.++|..| .+.++.+.-.++++..-..+ +.+.  ..-.
T Consensus       373 lGlys~sv~~~enAe~hf~~a~k~t~~~dl~------a~~nlnlAi~Y-L~~~~~ed~y~~ld~i~p~n-t~s~ssq~l~  444 (629)
T KOG2300|consen  373 LGLYSHSVNCYENAEFHFIEATKLTESIDLQ------AFCNLNLAISY-LRIGDAEDLYKALDLIGPLN-TNSLSSQRLE  444 (629)
T ss_pred             HhhHhhhcchHHHHHHHHHHHHHhhhHHHHH------HHHHHhHHHHH-HHhccHHHHHHHHHhcCCCC-CCcchHHHHH
Confidence            7777777899999999999999875543211      22445566666 46665554444444322211 1100  0011


Q ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc-c-----hHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC--CCCCcc
Q 036703          291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP-E-----NCYAWSKYTELEKSLDETERARAIFELAIAQPI--LDLPEF  362 (365)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~-----~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~--~~~p~~  362 (365)
                      ..+++.+|-+.+..+++.+|+..+.+.++... .     ..-....++.+....|+..+++++..-+++...  .|.|-.
T Consensus       445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vq  524 (629)
T KOG2300|consen  445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQ  524 (629)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHH
Confidence            56778888888999999999999999998741 1     123445666777788999999999887776542  288888


Q ss_pred             cc
Q 036703          363 LW  364 (365)
Q Consensus       363 ~~  364 (365)
                      +|
T Consensus       525 Lw  526 (629)
T KOG2300|consen  525 LW  526 (629)
T ss_pred             HH
Confidence            77

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.0019  Score=49.80  Aligned_cols=65  Identities=12%  Similarity=0.058  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHH
Q 036703          204 PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR  275 (365)
Q Consensus       204 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  275 (365)
                      |+....+...+.++....++..|..+++...+........     -....-++...|  ..|+.+.+..++.
T Consensus       187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se-----d~r~lenLL~ay--d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE-----DSRSLENLLTAY--DEGDIEEIKKVLS  251 (308)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH-----HHHHHHHHHHHh--ccCCHHHHHHHHc
Confidence            3444556666777777889999999999976652221110     023455555564  6788877766654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.13  E-value=0.0019  Score=49.44  Aligned_cols=172  Identities=15%  Similarity=0.114  Sum_probs=104.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhhC----CC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH------HH
Q 036703           24 NNYIRMEENLGNVAGARQIFERWMHWM----PD---HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS------AW   90 (365)
Q Consensus        24 ~~~~~~~~~~g~~~~A~~~~~~al~~~----p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~   90 (365)
                      ..-+..+.-..++..|-..|.++-...    ..   ...+...++++ +.+++++|...+++++++..+...      ..
T Consensus        38 ~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~  116 (288)
T KOG1586|consen   38 ERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHH  116 (288)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhh
Confidence            333444444445555555555554322    11   22333334555 445899999999999988765443      34


Q ss_pred             HHHHHHHHhh-cchHHHHHHHHHHHhhhhcCChh--hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----
Q 036703           91 INFADFEMKM-GEVDRARNVYECAVEIFLADDHD--EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR----  163 (365)
Q Consensus        91 ~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----  163 (365)
                      +.+|.+|... .++++|+..|+.+-+. ...+..  .....++..+.+-.   ..+++.+|+++|++.....-++.    
T Consensus       117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~-yk~ees~ssANKC~lKvA~yaa---~leqY~~Ai~iyeqva~~s~~n~LLKy  192 (288)
T KOG1586|consen  117 IEIAEIYESDLQDFEKAIAHYEQAAEY-YKGEESVSSANKCLLKVAQYAA---QLEQYSKAIDIYEQVARSSLDNNLLKY  192 (288)
T ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHHH-HcchhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccchHHHh
Confidence            4788887764 8999999999999987 655411  11334555666666   88999999999999877544432    


Q ss_pred             -hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH
Q 036703          164 -AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD  208 (365)
Q Consensus       164 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~  208 (365)
                       ....+...+..+....+.-        .+...+++..+.+|...+
T Consensus       193 s~KdyflkAgLChl~~~D~v--------~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  193 SAKDYFLKAGLCHLCKADEV--------NAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHHHHHHHHHHhHhcccHH--------HHHHHHHHHHhcCCcccc
Confidence             1122222233333334322        366677777788897654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.12  E-value=0.0011  Score=51.08  Aligned_cols=125  Identities=10%  Similarity=0.085  Sum_probs=62.7

Q ss_pred             HHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHH
Q 036703          218 ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKK  296 (365)
Q Consensus       218 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~  296 (365)
                      ....+++.|+.+|++++...-.+...++   -..++-..+..+ .+.+.+++|-..+.+-.......... ++ ...+..
T Consensus       121 lenv~Pd~AlqlYqralavve~~dr~~m---a~el~gk~sr~l-Vrl~kf~Eaa~a~lKe~~~~~~~~~y-~~~~k~~va  195 (308)
T KOG1585|consen  121 LENVKPDDALQLYQRALAVVEEDDRDQM---AFELYGKCSRVL-VRLEKFTEAATAFLKEGVAADKCDAY-NSQCKAYVA  195 (308)
T ss_pred             hhcCCHHHHHHHHHHHHHHHhccchHHH---HHHHHHHhhhHh-hhhHHhhHHHHHHHHhhhHHHHHhhc-ccHHHHHHH
Confidence            3455666666666666655333221111   122333444444 55555666665555555542111110 22 233444


Q ss_pred             HHHHHHHhCCCccHHHHHHHHHhh----CcchHHHHHHHHHHHhhccchhHHHHHH
Q 036703          297 YIEMELCLGNIDPCRKLYEKYLEW----SPENCYAWSKYTELEKSLDETERARAIF  348 (365)
Q Consensus       297 ~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~  348 (365)
                      .+-++.-..++..|.++|+...+.    .|++.....++...+- .||.+++.++.
T Consensus       196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl  250 (308)
T KOG1585|consen  196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL  250 (308)
T ss_pred             HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence            444455556777777777766554    3445556666555553 46666655554

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.06  E-value=0.0023  Score=50.20  Aligned_cols=124  Identities=15%  Similarity=0.216  Sum_probs=84.2

Q ss_pred             hcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------cchHHHHHHHHHHHhh
Q 036703           32 NLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP------YNLSAWINFADFEMKM  100 (365)
Q Consensus        32 ~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~  100 (365)
                      ...++++|+..|++.+++.|+     ..+....+.+..+.|++++....|.+++..-.      .+......+.++-.-.
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS  118 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS  118 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence            345789999999999999988     34566778888999999998888887765211      1333344444444445


Q ss_pred             cchHHHHHHHHHHHhhhhcCChhhHHHHHH----HHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703          101 GEVDRARNVYECAVEIFLADDHDEAEQLFV----AFAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus       101 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                      .+.+--...|+..+.. ..+  .....+|+    .++.++.   ..+++.+-.+++++....+..
T Consensus       119 ~~m~LLQ~FYeTTL~A-Lkd--AKNeRLWFKTNtKLgkl~f---d~~e~~kl~KIlkqLh~SCq~  177 (440)
T KOG1464|consen  119 KNMDLLQEFYETTLDA-LKD--AKNERLWFKTNTKLGKLYF---DRGEYTKLQKILKQLHQSCQT  177 (440)
T ss_pred             hhhHHHHHHHHHHHHH-HHh--hhcceeeeeccchHhhhhe---eHHHHHHHHHHHHHHHHHhcc
Confidence            5666666677776665 322  12256664    6888888   888888887777776655443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.04  E-value=5.3e-05  Score=61.06  Aligned_cols=108  Identities=11%  Similarity=0.056  Sum_probs=94.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG  101 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  101 (365)
                      ...-|.-|+++|++++|+.+|.+++..+|. +......+..|.+...+..|..-...++.++.....+|.+.+..-...|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            345678899999999999999999999995 7788889999999999999999999999999888899999999999999


Q ss_pred             chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 036703          102 EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF  135 (365)
Q Consensus       102 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  135 (365)
                      ...+|.+-+++++.. .|.+    .++-..++.+
T Consensus       180 ~~~EAKkD~E~vL~L-EP~~----~ELkK~~a~i  208 (536)
T KOG4648|consen  180 NNMEAKKDCETVLAL-EPKN----IELKKSLARI  208 (536)
T ss_pred             hHHHHHHhHHHHHhh-Cccc----HHHHHHHHHh
Confidence            999999999999999 8887    5555555443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=0.00064  Score=54.07  Aligned_cols=113  Identities=12%  Similarity=0.077  Sum_probs=72.7

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHH---HHHHHHHhccHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLS---YIKFKLRYNEVQRARHIFER   78 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~~~~~~~~~~~~~A~~~~~~   78 (365)
                      +.+|...|..++...|++..+-..|++++...|+.+.|..++...-..... ..|..   .+.+..+..+..+. ..+++
T Consensus       150 ~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~~~~~-~~l~~  227 (304)
T COG3118         150 FGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAATPEI-QDLQR  227 (304)
T ss_pred             hhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhcCCCH-HHHHH
Confidence            456777788888888888888888888888888887777776654221111 22222   22333222222211 23455


Q ss_pred             HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      .+..+|++..+-+.++..+...|+.+.|.+.+-..++.
T Consensus       228 ~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         228 RLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            66778888888888888888888888888877777766

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.01  E-value=0.0064  Score=51.12  Aligned_cols=181  Identities=12%  Similarity=0.030  Sum_probs=119.9

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCcchHHHHHHHHHHHh---hcchHHHHHHHHHHHhhhhcCChhhH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQC----HPYNLSAWINFADFEMK---MGEVDRARNVYECAVEIFLADDHDEA  125 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~  125 (365)
                      +.+...+.-.|....+++..+.+.+.+-..    .++.+.+-..+|..+.+   .|+.++|++++..++....+.+    
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~----  216 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD----  216 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC----
Confidence            455666677788888999999988877665    55677888889999998   8999999999999655514444    


Q ss_pred             HHHHHHHHHHHHh------ccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchh----hhHHHHHHHHHH
Q 036703          126 EQLFVAFAKFEEM------GCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG----IEDAIAGKMRLQ  195 (365)
Q Consensus       126 ~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~  195 (365)
                      ++++...|.+|..      .......++|+..|.++....|+.-   .-..++.+....|....    +..+.+.-+...
T Consensus       217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y---~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll  293 (374)
T PF13281_consen  217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY---SGINAATLLMLAGHDFETSEELRKIGVKLSSLL  293 (374)
T ss_pred             hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc---chHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence            8888888888761      1123468899999999999886531   22223333334443221    111111111111


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          196 YEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       196 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      -++.....-.+....-.++.+..-.|++++|...++++++..|+.
T Consensus       294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            111111222344555667777788999999999999999998874

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=98.00  E-value=1.4e-05  Score=63.23  Aligned_cols=91  Identities=14%  Similarity=0.287  Sum_probs=74.6

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHH-HHHhccHHHHHHHHHHHHHhCCcc
Q 036703            9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKF-KLRYNEVQRARHIFERLVQCHPYN   86 (365)
Q Consensus         9 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~-~~~~~~~~~A~~~~~~~l~~~p~~   86 (365)
                      |.++....|+++..|..++..-...|-+.+-..+|..++..+|. .++|...+.+ +...++++.++.+|.+++..+|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            55666778888899999988888888888888899999998888 7888876655 446788899999999999999989


Q ss_pred             hHHHHHHHHHHHh
Q 036703           87 LSAWINFADFEMK   99 (365)
Q Consensus        87 ~~~~~~~~~~~~~   99 (365)
                      |.+|..+-.+...
T Consensus       176 p~iw~eyfr~El~  188 (435)
T COG5191         176 PRIWIEYFRMELM  188 (435)
T ss_pred             chHHHHHHHHHHH
Confidence            9998888776553

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=0.00019  Score=54.86  Aligned_cols=90  Identities=13%  Similarity=0.059  Sum_probs=71.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHH
Q 036703           27 IRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR  105 (365)
Q Consensus        27 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  105 (365)
                      |..+.....+..|+..|.+++..+|. ...|..-+.++.+.++++.+..--.+++++.|+.+.....+|.+......+++
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            34444556677788888888888888 57788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHhh
Q 036703          106 ARNVYECAVEI  116 (365)
Q Consensus       106 A~~~~~~a~~~  116 (365)
                      |+..+.++...
T Consensus        97 aI~~Lqra~sl  107 (284)
T KOG4642|consen   97 AIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHHH
Confidence            88888888544

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.96  E-value=0.0089  Score=51.10  Aligned_cols=276  Identities=12%  Similarity=0.106  Sum_probs=182.4

Q ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHH-hhhhcCC----hhhHHHHHHHHHH
Q 036703           60 IKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV-EIFLADD----HDEAEQLFVAFAK  134 (365)
Q Consensus        60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~~----~~~~~~~~~~~~~  134 (365)
                      ..++....+...+..-.+.++....+++.....-++++.-.|++.+|.+.+...- .. .|.-    .-.+.-.|.++|.
T Consensus       213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGc  291 (696)
T KOG2471|consen  213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGC  291 (696)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcce
Confidence            3455555666666666666777777888888899999999999999999886642 22 2221    0012446788999


Q ss_pred             HHHhccccchhHHHHHHHHHHhcc-C--------C-------CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHH
Q 036703          135 FEEMGCNCKETDRARCIYKFALDR-I--------P-------KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYED  198 (365)
Q Consensus       135 ~~~~~~~~~~~~~A~~~~~~~l~~-~--------p-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  198 (365)
                      ++.   +.|.+.-+..+|.++++. +        |       .+.+..+.+..+..+...|.+.        .|.++|.+
T Consensus       292 Ih~---~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl--------~AfqCf~~  360 (696)
T KOG2471|consen  292 IHY---QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL--------LAFQCFQK  360 (696)
T ss_pred             Eee---ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcH--------HHHHHHHH
Confidence            999   999999999999999851 1        1       1234566677777777888876        58999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHh---C----------------------------------------------CHHHHHHH
Q 036703          199 GVRKNPMNYDTWFDYIRLEERV---G----------------------------------------------NQERVREV  229 (365)
Q Consensus       199 ~l~~~p~~~~~~~~~~~~~~~~---~----------------------------------------------~~~~A~~~  229 (365)
                      +...+..++.+|+.++++.+..   |                                              ..+-|+-+
T Consensus       361 av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vC  440 (696)
T KOG2471|consen  361 AVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVC  440 (696)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHH
Confidence            9999999999999999876421   0                                              02234555


Q ss_pred             HHHHHhcCCCchh--------------------------hhH------------------HHH----hHHHHHHHHHHHh
Q 036703          230 YERAIANVPPAEE--------------------------KRY------------------WQR----YIYLWINYALYKE  261 (365)
Q Consensus       230 ~~~~~~~~p~~~~--------------------------~~~------------------~~~----~~~~~~~~~~~~~  261 (365)
                      ++.++-..|....                          ..-                  +..    ...++-..+-. +
T Consensus       441 Lrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV-~  519 (696)
T KOG2471|consen  441 LRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYV-E  519 (696)
T ss_pred             HHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHH-H
Confidence            5555533321100                          000                  000    01122222333 4


Q ss_pred             hccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHH-----HHhCCCccHHHHHHHHHh----------------
Q 036703          262 VDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEME-----LCLGNIDPCRKLYEKYLE----------------  319 (365)
Q Consensus       262 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~A~~~~~~al~----------------  319 (365)
                      +..|+.-.|+..-++.+..        |+ ..++..+|.+|     +-+.+..+|+..+.--+-                
T Consensus       520 L~Lgd~i~AL~~a~kLLq~--------~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~  591 (696)
T KOG2471|consen  520 LELGDPIKALSAATKLLQL--------ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQ  591 (696)
T ss_pred             HHhcChhhHHHHHHHHHhh--------hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhh
Confidence            6889999999999999887        55 56666666665     346667777666554110                


Q ss_pred             -------hC------cc----h-----HHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          320 -------WS------PE----N-----CYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       320 -------~~------p~----~-----~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                             ++      |+    +     ..+..+++..+..+|+.++|+.++..+..+.+
T Consensus       592 ~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~h  650 (696)
T KOG2471|consen  592 WWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLH  650 (696)
T ss_pred             hhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhh
Confidence                   01      11    1     23677888999999999999999988887766

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.00016  Score=55.37  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=46.9

Q ss_pred             HhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703           65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE  144 (365)
Q Consensus        65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (365)
                      ....+..|+..|.+++..+|..+..|.+-+.++.+.++++.+..--.++++. .|+.    ....+.++.+..   ....
T Consensus        22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-~~N~----vk~h~flg~~~l---~s~~   93 (284)
T KOG4642|consen   22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-DPNL----VKAHYFLGQWLL---QSKG   93 (284)
T ss_pred             chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-ChHH----HHHHHHHHHHHH---hhcc
Confidence            3344555555555555555555555555555555555555555555555555 4444    555555555555   5555


Q ss_pred             hHHHHHHHHHH
Q 036703          145 TDRARCIYKFA  155 (365)
Q Consensus       145 ~~~A~~~~~~~  155 (365)
                      +++|+.++.++
T Consensus        94 ~~eaI~~Lqra  104 (284)
T KOG4642|consen   94 YDEAIKVLQRA  104 (284)
T ss_pred             ccHHHHHHHHH
Confidence            55555555554

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.011  Score=50.49  Aligned_cols=134  Identities=8%  Similarity=-0.042  Sum_probs=80.3

Q ss_pred             HHhCCHHHHHHHHHHHHhcCCCchhhhHHHHh-HHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHH
Q 036703          218 ERVGNQERVREVYERAIANVPPAEEKRYWQRY-IYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKK  296 (365)
Q Consensus       218 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~  296 (365)
                      .-.|++.+|.+....+..-+...+...+.+.. ..+....|.+. ...+-++.|...|..|.+......   -..-.-.+
T Consensus       334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys-~sv~~~enAe~hf~~a~k~t~~~d---l~a~~nln  409 (629)
T KOG2300|consen  334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS-HSVNCYENAEFHFIEATKLTESID---LQAFCNLN  409 (629)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh-hhcchHHHHHHHHHHHHHhhhHHH---HHHHHHHh
Confidence            34566666666665555443222221111111 12333344443 577889999999999998742100   00223445


Q ss_pred             HHHHHHHhCCCccHHHHHHHHHhhCcc-------hHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          297 YIEMELCLGNIDPCRKLYEKYLEWSPE-------NCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       297 ~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      ++..|.+.|+-+.-.++++..-..+..       -..+.+.+|.+....|++.+|+....+.++..
T Consensus       410 lAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  410 LAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            677788877766666665554322211       13467778888899999999999999998776

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.91  E-value=0.0023  Score=54.79  Aligned_cols=145  Identities=13%  Similarity=0.098  Sum_probs=84.6

Q ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhc
Q 036703           60 IKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG  139 (365)
Q Consensus        60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (365)
                      ..-..+..+.+.-++.-.+|++++|+.+.+|+.++.-  ......+|.++|+++++. .        +..+.......  
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkA-g--------E~~lg~s~~~~--  241 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKA-G--------EASLGKSQFLQ--  241 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHH-H--------HHhhchhhhhh--
Confidence            3444566677888888888999999888888877652  234577888888888887 2        22221111111  


Q ss_pred             cccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Q 036703          140 CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM--NYDTWFDYIRLE  217 (365)
Q Consensus       140 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~--~~~~~~~~~~~~  217 (365)
                       ..|..-+.       +..-..+....+-..++....+.|...        +|++.++..++.+|.  +..+...++..+
T Consensus       242 -~~g~~~e~-------~~~Rdt~~~~y~KrRLAmCarklGr~~--------EAIk~~rdLlke~p~~~~l~IrenLie~L  305 (539)
T PF04184_consen  242 -HHGHFWEA-------WHRRDTNVLVYAKRRLAMCARKLGRLR--------EAIKMFRDLLKEFPNLDNLNIRENLIEAL  305 (539)
T ss_pred             -cccchhhh-------hhccccchhhhhHHHHHHHHHHhCChH--------HHHHHHHHHHhhCCccchhhHHHHHHHHH
Confidence             11111111       100111111233344555556666543        577777777776654  345667777777


Q ss_pred             HHhCCHHHHHHHHHHH
Q 036703          218 ERVGNQERVREVYERA  233 (365)
Q Consensus       218 ~~~~~~~~A~~~~~~~  233 (365)
                      ...+.+.++..++.+-
T Consensus       306 Lelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  306 LELQAYADVQALLAKY  321 (539)
T ss_pred             HhcCCHHHHHHHHHHh
Confidence            7777777777777764

The molecular function of this protein is uncertain.

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=97.89  E-value=0.00067  Score=47.87  Aligned_cols=117  Identities=23%  Similarity=0.450  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHcCC---CCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703          191 KMRLQYEDGVRKNP---MNYDTWFDYIRLEERV----GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD  263 (365)
Q Consensus       191 ~a~~~~~~~l~~~p---~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  263 (365)
                      ..+..|+..+....   +..+.|..++......    +.......++++++....++..-+--.+++.+|+.++.+.  .
T Consensus         3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~--~   80 (126)
T PF08311_consen    3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS--S   80 (126)
T ss_dssp             HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB--S
T ss_pred             HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc--c
Confidence            35567777777544   5568999998876543    4667778899999988766544333446788888888652  1


Q ss_pred             cCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHH
Q 036703          264 AGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYL  318 (365)
Q Consensus       264 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  318 (365)
                           .+..+|+.+.......    .-+.+|..+|.++...|++++|.++|++++
T Consensus        81 -----~~~~if~~l~~~~IG~----~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   81 -----DPREIFKFLYSKGIGT----KLALFYEEWAEFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             -----HHHHHHHHHHHHTTST----TBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHcCccH----HHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence                 7777777776653211    126677888888888888888888887764

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.003  Score=50.39  Aligned_cols=134  Identities=9%  Similarity=0.019  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHH
Q 036703           89 AWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLY  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  168 (365)
                      .-+.-+.-....|++.+|...|..++.. .|.+    ..+...++.++.   ..|+.+.|..++...-....... ....
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~-~~~~----~~~~~~la~~~l---~~g~~e~A~~iL~~lP~~~~~~~-~~~l  206 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQA-APEN----SEAKLLLAECLL---AAGDVEAAQAILAALPLQAQDKA-AHGL  206 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHh-Cccc----chHHHHHHHHHH---HcCChHHHHHHHHhCcccchhhH-HHHH
Confidence            3344455566788999999999999999 8887    888999999999   99999999888776433222221 1111


Q ss_pred             HHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          169 RKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      ..-+.+..+.....+         ...+++.+..+|++.++-+.++..+...|+.+.|.+.+-..++.+-..
T Consensus       207 ~a~i~ll~qaa~~~~---------~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~  269 (304)
T COG3118         207 QAQIELLEQAAATPE---------IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF  269 (304)
T ss_pred             HHHHHHHHHHhcCCC---------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            123444444433321         245677888999999999999999999999999999999888876543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.86  E-value=0.0005  Score=60.62  Aligned_cols=115  Identities=15%  Similarity=0.203  Sum_probs=92.7

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIF   76 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~   76 (365)
                      .+.|.++++...+..|++.-....-|+++...|++++|++.|++++....+     .-.+..++-++..+.++++|...|
T Consensus       249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f  328 (468)
T PF10300_consen  249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF  328 (468)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence            467899999999999998888888999999999999999999999854433     235667788888899999999999


Q ss_pred             HHHHHhCCcchHHH-HHHHHHHHhhcch-------HHHHHHHHHHHhh
Q 036703           77 ERLVQCHPYNLSAW-INFADFEMKMGEV-------DRARNVYECAVEI  116 (365)
Q Consensus        77 ~~~l~~~p~~~~~~-~~~~~~~~~~~~~-------~~A~~~~~~a~~~  116 (365)
                      .++.+.+..+...+ +..|-++...|+.       ++|.++|.++-..
T Consensus       329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            99999888665444 3445667778888       7777777776554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.85  E-value=2.8e-05  Score=40.71  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch
Q 036703          292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN  324 (365)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  324 (365)
                      +.|..+|.++...|++++|++.|+++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456666777777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.83  E-value=0.012  Score=49.48  Aligned_cols=178  Identities=13%  Similarity=0.073  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC---chhHHHHHHHHHHHHH---cCCchhhhHHHHHHHHHHHHH
Q 036703          125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK---GRAEDLYRKFLAFEKQ---YGDREGIEDAIAGKMRLQYED  198 (365)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~  198 (365)
                      ++.+...+...|.   ...+++.-+++.+..-.. |.   .....+-..|+-...+   .|+.        ++|+.++..
T Consensus       140 s~div~~lllSyR---diqdydamI~Lve~l~~~-p~~~~~~~~~i~~~yafALnRrn~~gdr--------e~Al~il~~  207 (374)
T PF13281_consen  140 SPDIVINLLLSYR---DIQDYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFALNRRNKPGDR--------EKALQILLP  207 (374)
T ss_pred             ChhHHHHHHHHhh---hhhhHHHHHHHHHHhhcc-CccchhcchHHHHHHHHHHhhcccCCCH--------HHHHHHHHH
Confidence            3667777777888   999999999999876554 21   1123455555555545   4553        479999988


Q ss_pred             HH-HcCCCCHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC-h
Q 036703          199 GV-RKNPMNYDTWFDYIRLEER---------VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD-L  267 (365)
Q Consensus       199 ~l-~~~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  267 (365)
                      ++ ...+.+++++...|.+|.+         ....++|+..|.++....|+..          .-++++.++. ..|. .
T Consensus       208 ~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y----------~GIN~AtLL~-~~g~~~  276 (374)
T PF13281_consen  208 VLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY----------SGINAATLLM-LAGHDF  276 (374)
T ss_pred             HHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc----------chHHHHHHHH-HcCCcc
Confidence            55 4666778999999988743         2357889999999999997642          3344444442 3333 2


Q ss_pred             hHHHHHHHHHHhcc---ccCCCcchhHHHH--HHHHHHHHHhCCCccHHHHHHHHHhhCcchH
Q 036703          268 ERTRDVYRTLFIFY---FSFSPRMEERRIF--KKYIEMELCLGNIDPCRKLYEKYLEWSPENC  325 (365)
Q Consensus       268 ~~a~~~~~~a~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  325 (365)
                      ....++-+-++...   ......-+..+.|  -.++++..-.|++++|...+++++...|...
T Consensus       277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            22212211111110   0000000113333  3456666778999999999999998876543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.81  E-value=0.031  Score=52.38  Aligned_cols=92  Identities=10%  Similarity=0.105  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC
Q 036703          207 YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP  286 (365)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~  286 (365)
                      .+-+-.++..|...|-+++.+.+++.++.....+-.         ++..++.+|  ..-.+++-++.++-....- +.++
T Consensus      1279 adeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg---------mfTELaiLY--skykp~km~EHl~LFwsRv-NipK 1346 (1666)
T KOG0985|consen 1279 ADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG---------MFTELAILY--SKYKPEKMMEHLKLFWSRV-NIPK 1346 (1666)
T ss_pred             hHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH---------HHHHHHHHH--HhcCHHHHHHHHHHHHHhc-chHH
Confidence            345667888889999999999999998877555432         455555554  3344555555444332210 0000


Q ss_pred             cc---hhHHHHHHHHHHHHHhCCCccH
Q 036703          287 RM---EERRIFKKYIEMELCLGNIDPC  310 (365)
Q Consensus       287 ~~---~~~~~~~~~~~~~~~~~~~~~A  310 (365)
                      +.   ....+|..+.-+|.+-..++.|
T Consensus      1347 viRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1347 VIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            00   1134566666666665555554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.81  E-value=6.6e-05  Score=39.23  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD   52 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~   52 (365)
                      .+|..+|.++...|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555565555555555553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.80  E-value=4e-05  Score=40.08  Aligned_cols=33  Identities=21%  Similarity=0.418  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch
Q 036703          292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN  324 (365)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  324 (365)
                      ..|..+|.++...|++++|...|+++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            456667777777777777777777777777753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=97.79  E-value=5.6e-05  Score=60.01  Aligned_cols=90  Identities=16%  Similarity=0.429  Sum_probs=78.0

Q ss_pred             HHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH-hhcchHHHHHHHHHHHhhhhcC
Q 036703           43 FERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM-KMGEVDRARNVYECAVEIFLAD  120 (365)
Q Consensus        43 ~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~  120 (365)
                      |.|+....|. +..|..++....+.|-+.....+|.++++.+|.++++|..-+.... ..++++.++..|.++++. +|.
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~-N~~  174 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM-NSR  174 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhcc-CCC
Confidence            3444444555 8999999999999999999999999999999999999998666644 478999999999999999 998


Q ss_pred             ChhhHHHHHHHHHHHHH
Q 036703          121 DHDEAEQLFVAFAKFEE  137 (365)
Q Consensus       121 ~~~~~~~~~~~~~~~~~  137 (365)
                      +    +.+|..+..++.
T Consensus       175 ~----p~iw~eyfr~El  187 (435)
T COG5191         175 S----PRIWIEYFRMEL  187 (435)
T ss_pred             C----chHHHHHHHHHH
Confidence            8    999999888776

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.77  E-value=0.0014  Score=48.10  Aligned_cols=90  Identities=17%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhhCCC-----------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 036703           27 IRMEENLGNVAGARQIFERWMHWMPD-----------------------HEGWLSYIKFKLRYNEVQRARHIFERLVQCH   83 (365)
Q Consensus        27 ~~~~~~~g~~~~A~~~~~~al~~~p~-----------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~   83 (365)
                      +......|+.+.+...+++++.+...                       ..+...++..+...|+++.|...+++++..+
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d   92 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD   92 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence            44445667888888888888875321                       1233445566678899999999999999999


Q ss_pred             CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      |.+..+|..+..++...|+...|++.|++..+.
T Consensus        93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   93 PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998776

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.74  E-value=9.3e-05  Score=38.64  Aligned_cols=30  Identities=27%  Similarity=0.358  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhhCC
Q 036703           22 LWNNYIRMEENLGNVAGARQIFERWMHWMP   51 (365)
Q Consensus        22 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p   51 (365)
                      +|..+|.++...|++++|++.|+++++++|
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            444555555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.74  E-value=6.3e-05  Score=63.50  Aligned_cols=95  Identities=13%  Similarity=0.161  Sum_probs=61.0

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      |+.|+.+|.++++++|+++..+...+..+.+.+++..|+.-+.++++.+|. ...+..-|......+.+.+|...|++..
T Consensus        20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~   99 (476)
T KOG0376|consen   20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVK   99 (476)
T ss_pred             HHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhh
Confidence            556666666666666666666666666666666666666666666666666 5566666666666666666666666666


Q ss_pred             HhCCcchHHHHHHHHH
Q 036703           81 QCHPYNLSAWINFADF   96 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~~   96 (365)
                      ...|+++.+...+..+
T Consensus       100 ~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen  100 KLAPNDPDATRKIDEC  115 (476)
T ss_pred             hcCcCcHHHHHHHHHH
Confidence            6666666555544443

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.72  E-value=0.067  Score=54.75  Aligned_cols=284  Identities=12%  Similarity=0.144  Sum_probs=171.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHH---hhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHH
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWM---HWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN   92 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al---~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~   92 (365)
                      +-|......-....+..+-+-.+.|++   ..+|+     .+.|...|++....|.++.|...+-+|.+..+  +.+...
T Consensus      1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E 1707 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLE 1707 (2382)
T ss_pred             hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHH
Confidence            445554444333334444444445444   23544     67999999999999999999999999988875  889999


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhhhcCC------------hhhHHHHHHHHHHHHHhccccchh--HHHHHHHHHHhcc
Q 036703           93 FADFEMKMGEVDRARNVYECAVEIFLADD------------HDEAEQLFVAFAKFEEMGCNCKET--DRARCIYKFALDR  158 (365)
Q Consensus        93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~l~~  158 (365)
                      .|+++...|+...|+.++++.++.-.|+.            ......+.+.++.+..   ..|++  +..++.|+.+.+.
T Consensus      1708 ~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~---es~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1708 RAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLE---ESGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHH---HhcchhHHHHHHHHHHHHHH
Confidence            99999999999999999999996524441            0011233445555555   55554  4688889999998


Q ss_pred             CCCchhHHHHHH--HHHHHHHc--CCch---hhhHHHHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHH---h
Q 036703          159 IPKGRAEDLYRK--FLAFEKQY--GDRE---GIEDAIAGKMRLQYEDGVRKNP--------MNYDTWFDYIRLEER---V  220 (365)
Q Consensus       159 ~p~~~~~~~~~~--~~~~~~~~--~~~~---~~~~~~~~~a~~~~~~~l~~~p--------~~~~~~~~~~~~~~~---~  220 (365)
                      .|......++.+  +..++...  +..+   .... .+. ++-.|.+++..+-        .-..+|+.+|.....   .
T Consensus      1785 l~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~-~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~ 1862 (2382)
T KOG0890|consen 1785 LPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLS-LLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKA 1862 (2382)
T ss_pred             cccccCceeeHHHHHHHHhhhhhcccccccccHHH-HHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccC
Confidence            885332222222  22222211  1111   1111 112 4555567766443        334567776554432   1


Q ss_pred             -------CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHh----ccccCCCcch
Q 036703          221 -------GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFI----FYFSFSPRME  289 (365)
Q Consensus       221 -------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~----~~~~~~~~~~  289 (365)
                             ++....-...++++...|.-.          .+..|.++...-....++.-.++.+.+.    ..       |
T Consensus      1863 ~r~ei~s~~~~~in~~i~~~~~~lp~Y~----------f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~Y-------P 1925 (2382)
T KOG0890|consen 1863 PRGEIVSKNLKLINSLIEEALEHLPTYQ----------FYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAY-------P 1925 (2382)
T ss_pred             ChhhhhhhhHHHHHHHHHHHHHhCcchH----------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-------c
Confidence                   233344555666777777742          4445555543233444444444444433    24       8


Q ss_pred             hHHHHHHHHHHHH-HhCCCccHHHHHHHHHhhCcchHHHH
Q 036703          290 ERRIFKKYIEMEL-CLGNIDPCRKLYEKYLEWSPENCYAW  328 (365)
Q Consensus       290 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~  328 (365)
                      ...+|...+.+-. ...+.+.+.++++++....|+...+.
T Consensus      1926 qq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~~~~l~ 1965 (2382)
T KOG0890|consen 1926 QQTLWQSAALSKSNVPSRVERCKEILTKSRRQKPDYKKLL 1965 (2382)
T ss_pred             hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccHHHHH
Confidence            7888887776543 23456788889998888877655444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=0.00099  Score=51.36  Aligned_cols=109  Identities=14%  Similarity=0.133  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHh
Q 036703          208 DTWFDYIRLEERVGNQERVREVYERAIAN--------VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFI  279 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~  279 (365)
                      .+...-|.-+...|++.+|...|..|+..        .|.+++          |..+..                     
T Consensus       179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~e----------W~eLdk---------------------  227 (329)
T KOG0545|consen  179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPE----------WLELDK---------------------  227 (329)
T ss_pred             HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChH----------HHHHHH---------------------
Confidence            45666677778899999999999888753        333331          111000                     


Q ss_pred             ccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          280 FYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                               ....++.+|.+++...|++-++.+.....+..+|.|+.+++..+......=+..+|..-|.+++.++|
T Consensus       228 ---------~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp  295 (329)
T KOG0545|consen  228 ---------MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP  295 (329)
T ss_pred             ---------hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence                     00113445555555555555555555555555555555555555555555555555555555555554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.68  E-value=0.0046  Score=54.70  Aligned_cols=167  Identities=17%  Similarity=0.084  Sum_probs=107.1

Q ss_pred             ccchhHHHHHHHHHHhccCCCch-hH-HHHHHHHHHH-HHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 036703          141 NCKETDRARCIYKFALDRIPKGR-AE-DLYRKFLAFE-KQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLE  217 (365)
Q Consensus       141 ~~~~~~~A~~~~~~~l~~~p~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~  217 (365)
                      -.|+-+.+++.+.++.+...-.. .. -+...|-.+. .-.+. +. .+.....|..+++...+..|++.-..+..|.++
T Consensus       200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~-~~-~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~  277 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGI-DG-EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE  277 (468)
T ss_pred             cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCC-cc-cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            56899999999999887322111 11 1111111111 11121 11 222355799999999999999988888999999


Q ss_pred             HHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHH
Q 036703          218 ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKY  297 (365)
Q Consensus       218 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~  297 (365)
                      ...|+.++|+..|++++.....-+..   ..  ..+..++-.+ ....++++|...|.+..+...     |...-..+..
T Consensus       278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql---~~--l~~~El~w~~-~~~~~w~~A~~~f~~L~~~s~-----WSka~Y~Y~~  346 (468)
T PF10300_consen  278 RLKGNLEEAIESFERAIESQSEWKQL---HH--LCYFELAWCH-MFQHDWEEAAEYFLRLLKESK-----WSKAFYAYLA  346 (468)
T ss_pred             HHhcCHHHHHHHHHHhccchhhHHhH---HH--HHHHHHHHHH-HHHchHHHHHHHHHHHHhccc-----cHHHHHHHHH
Confidence            99999999999999988543322211   11  1233344443 477899999999999998642     1223344445


Q ss_pred             HHHHHHhCCC-------ccHHHHHHHHHhh
Q 036703          298 IEMELCLGNI-------DPCRKLYEKYLEW  320 (365)
Q Consensus       298 ~~~~~~~~~~-------~~A~~~~~~al~~  320 (365)
                      |.++...|+.       ++|.+.|.++-..
T Consensus       347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  347 AACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            6667788888       7788888777544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.59  E-value=0.0039  Score=45.66  Aligned_cols=61  Identities=15%  Similarity=0.170  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703          293 IFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA  353 (365)
Q Consensus       293 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  353 (365)
                      ....++..+...|++++|...+++++..+|-+..+|..+..++...|+...|...|+++.+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            4556777778899999999999999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.58  E-value=7.5e-05  Score=60.17  Aligned_cols=85  Identities=14%  Similarity=0.112  Sum_probs=43.1

Q ss_pred             hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHH
Q 036703           32 NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVY  110 (365)
Q Consensus        32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~  110 (365)
                      ..|.++.|++.|.+++.++|. ..++...+.++.+.+....|+.-+..++.++|++..-+...+.....+|++++|...+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl  205 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL  205 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence            444555555555555555554 3344444445555555555555555555555555444444444444455555555555


Q ss_pred             HHHHhh
Q 036703          111 ECAVEI  116 (365)
Q Consensus       111 ~~a~~~  116 (365)
                      ..+.+.
T Consensus       206 ~~a~kl  211 (377)
T KOG1308|consen  206 ALACKL  211 (377)
T ss_pred             HHHHhc
Confidence            555544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.56  E-value=0.041  Score=47.09  Aligned_cols=124  Identities=10%  Similarity=0.119  Sum_probs=78.8

Q ss_pred             hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 036703          164 AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM----NYDTWFDYIRLEERVGNQERVREVYERAIANVPP  239 (365)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  239 (365)
                      ....|..++.+..+.|...        .|...+.++...++.    .+.+.+..+.+....|+..+|+..++..+.....
T Consensus       145 ~~~~~l~~a~~aRk~g~~~--------~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~  216 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQ--------LALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS  216 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcH--------HHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence            3567777777777777655        466666666654321    3566667777777777777777777777662111


Q ss_pred             ch-------------------------hhhHHHHhHHHHHHHHHHHhhcc------CChhHHHHHHHHHHhccccCCCcc
Q 036703          240 AE-------------------------EKRYWQRYIYLWINYALYKEVDA------GDLERTRDVYRTLFIFYFSFSPRM  288 (365)
Q Consensus       240 ~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~~~~~~a~~~~~~~~~~~  288 (365)
                      ..                         ....-.....++..+|.+.. ..      +..+.+...|..+++..       
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~-~~~~~~~~~~~~~~~~~~~~a~~~~-------  288 (352)
T PF02259_consen  217 KNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD-ELYSKLSSESSDEILKYYKEATKLD-------  288 (352)
T ss_pred             hccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH-hhccccccccHHHHHHHHHHHHHhC-------
Confidence            00                         00011122456777777763 55      88999999999999998       


Q ss_pred             hh-HHHHHHHHHHHHH
Q 036703          289 EE-RRIFKKYIEMELC  303 (365)
Q Consensus       289 ~~-~~~~~~~~~~~~~  303 (365)
                      |. ...|..++.++.+
T Consensus       289 ~~~~k~~~~~a~~~~~  304 (352)
T PF02259_consen  289 PSWEKAWHSWALFNDK  304 (352)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            44 5567777776643

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.56  E-value=0.13  Score=52.80  Aligned_cols=116  Identities=15%  Similarity=0.097  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc-cc
Q 036703          205 MNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY-FS  283 (365)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~  283 (365)
                      .-.+.|+..+++.+..|.++.|...+-+|.+..++.           +.+..|.+. ...|+...|+.+++..+..+ |+
T Consensus      1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~-----------i~~E~AK~l-W~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRLPE-----------IVLERAKLL-WQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccch-----------HHHHHHHHH-HhhccHHHHHHHHHHHHHhhccc
Confidence            346899999999999999999999999998877554           778889997 59999999999999999763 22


Q ss_pred             CCCcc---hh---H----HHHHHHHHHHHHhCCC--ccHHHHHHHHHhhCcchHHHHHHHH
Q 036703          284 FSPRM---EE---R----RIFKKYIEMELCLGNI--DPCRKLYEKYLEWSPENCYAWSKYT  332 (365)
Q Consensus       284 ~~~~~---~~---~----~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~  332 (365)
                      .-...   |.   .    .....++......|++  ++-.+.|..+.+..|...+-++.+|
T Consensus      1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred             ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence            11100   11   1    1222333333455554  3568889999999986555444444

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=97.56  E-value=0.0026  Score=44.91  Aligned_cols=115  Identities=14%  Similarity=0.269  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHhcCC-CchhhhHHHHhHHHHHHHHHHHhhc---cCChhHHHHHHHHHHhccccCCCcchh---HHHHHHH
Q 036703          225 RVREVYERAIANVP-PAEEKRYWQRYIYLWINYALYKEVD---AGDLERTRDVYRTLFIFYFSFSPRMEE---RRIFKKY  297 (365)
Q Consensus       225 ~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~~a~~~~~~~~~~~~~---~~~~~~~  297 (365)
                      ..+..|+..+.... .+..       +..|..+..+.+..   .+....-..+++++++...+....-.+   ..+|..+
T Consensus         3 ~~r~~~e~~i~~~~~~dDP-------L~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~y   75 (126)
T PF08311_consen    3 QQRQEFEEQIRSYEEGDDP-------LDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKY   75 (126)
T ss_dssp             HHHHHHHHHHHCCGGSS-C-------HHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCCC-------hHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHH
Confidence            45677888877755 2221       56888888886422   245566778999998875433211111   4455555


Q ss_pred             HHHHHHhCCCccHHHHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703          298 IEMELCLGNIDPCRKLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       298 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                      +.      ..+.+..+|..+...  .-+.+.+|..+|.++...|++++|.++|++++
T Consensus        76 a~------~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi  126 (126)
T PF08311_consen   76 AD------LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI  126 (126)
T ss_dssp             HT------TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HH------HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence            54      344999999988875  56688999999999999999999999999875

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.034  Score=45.36  Aligned_cols=163  Identities=8%  Similarity=-0.006  Sum_probs=115.5

Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc-CCCchh-HHHHHHHH
Q 036703           95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR-IPKGRA-EDLYRKFL  172 (365)
Q Consensus        95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~-~~~~~~~~  172 (365)
                      -+....|++.+|-...++.++. .|.+    .-.|.---..+.   ..|+.+.-+..+++.+.. +|+-+. ..+.-.|+
T Consensus       111 ai~~~~g~~h~a~~~wdklL~d-~PtD----lla~kfsh~a~f---y~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmya  182 (491)
T KOG2610|consen  111 AILWGRGKHHEAAIEWDKLLDD-YPTD----LLAVKFSHDAHF---YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYA  182 (491)
T ss_pred             HHhhccccccHHHHHHHHHHHh-Cchh----hhhhhhhhhHHH---hccchhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence            3445678999999999999999 9987    666666666677   789999999999998876 554331 22223334


Q ss_pred             HHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHH
Q 036703          173 AFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYL  252 (365)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~  252 (365)
                      -.....|-++        .|.+.-+++++++|.+..+....+.++.-.|+..++.+...+--..=..+.     -....-
T Consensus       183 FgL~E~g~y~--------dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~-----mlasHN  249 (491)
T KOG2610|consen  183 FGLEECGIYD--------DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW-----MLASHN  249 (491)
T ss_pred             hhHHHhccch--------hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh-----HHHhhh
Confidence            3444555544        688889999999999999999999999999999999998877433211111     111223


Q ss_pred             HHHHHHHHhhccCChhHHHHHHHHHHh
Q 036703          253 WINYALYKEVDAGDLERTRDVYRTLFI  279 (365)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~~~~~~a~~  279 (365)
                      |-..+.++ ...+.++.|+++|.+-+-
T Consensus       250 yWH~Al~~-iE~aeye~aleIyD~ei~  275 (491)
T KOG2610|consen  250 YWHTALFH-IEGAEYEKALEIYDREIW  275 (491)
T ss_pred             hHHHHHhh-hcccchhHHHHHHHHHHH
Confidence            33455555 577899999999987653

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.53  E-value=0.016  Score=45.74  Aligned_cols=131  Identities=8%  Similarity=0.115  Sum_probs=80.8

Q ss_pred             CCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCCCch---hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 036703          204 PMNYDTW----FDYIRLEERVGNQERVREVYERAIANVPPAE---EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT  276 (365)
Q Consensus       204 p~~~~~~----~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  276 (365)
                      ..+..+|    ..+|.++...|++.+-.+++.+.-..+..+.   +.+--..++.++..-.+.| ..+++-.+-..+|++
T Consensus       138 AKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY-T~qKnNKkLK~lYeq  216 (440)
T KOG1464|consen  138 AKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY-TEQKNNKKLKALYEQ  216 (440)
T ss_pred             hhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh-hhhcccHHHHHHHHH
Confidence            3455666    3578888888888888888777665544322   1111112344544445565 367777888889999


Q ss_pred             HHhccccCCCcchhHH----HHHHHHHHHHHhCCCccHHHHHHHHHhhCcc-------hHHHHHHHHHHHhhcc
Q 036703          277 LFIFYFSFSPRMEERR----IFKKYIEMELCLGNIDPCRKLYEKYLEWSPE-------NCYAWSKYTELEKSLD  339 (365)
Q Consensus       277 a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~g  339 (365)
                      ++......    |.|.    +-.+-|.+..+.|.+++|-.-|-.|.+....       ...-+..++++++..|
T Consensus       217 alhiKSAI----PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  217 ALHIKSAI----PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             HHHhhccC----CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence            98875333    4433    3333455677889999998888888765322       1224455666666654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.52  E-value=0.022  Score=42.72  Aligned_cols=99  Identities=15%  Similarity=0.091  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHH
Q 036703           55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVA  131 (365)
Q Consensus        55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  131 (365)
                      .-+.++..+...|++++|...++.++....+.   ..+-.+++.+....|.+++|++.++..... .     -....-..
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~-----w~~~~~el  164 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE-S-----WAAIVAEL  164 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-c-----HHHHHHHH
Confidence            44566777888999999999999998665532   445678899999999999999988765443 1     12445566


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703          132 FAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       132 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      .|.++.   ..|+-++|+..|++++...++.
T Consensus       165 rGDill---~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         165 RGDILL---AKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             hhhHHH---HcCchHHHHHHHHHHHHccCCh
Confidence            789999   9999999999999999987554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.095  Score=49.38  Aligned_cols=160  Identities=15%  Similarity=0.081  Sum_probs=94.3

Q ss_pred             ccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 036703          141 NCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV  220 (365)
Q Consensus       141 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~  220 (365)
                      .-+..++|.+.-+++-+       ..+|..++....+.|..        ..|++.|-+     .+++..+...++...+.
T Consensus      1087 ~i~~ldRA~efAe~~n~-------p~vWsqlakAQL~~~~v--------~dAieSyik-----adDps~y~eVi~~a~~~ 1146 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCNE-------PAVWSQLAKAQLQGGLV--------KDAIESYIK-----ADDPSNYLEVIDVASRT 1146 (1666)
T ss_pred             HhhhHHHHHHHHHhhCC-------hHHHHHHHHHHHhcCch--------HHHHHHHHh-----cCCcHHHHHHHHHHHhc
Confidence            44566667666665421       46888888877776653        346666544     35667788888888899


Q ss_pred             CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHH
Q 036703          221 GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEM  300 (365)
Q Consensus       221 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  300 (365)
                      |.|++-..++.-+.+........      ..+.+.|+.     .++..+-.++    +. .       |+..-....|+-
T Consensus      1147 ~~~edLv~yL~MaRkk~~E~~id------~eLi~AyAk-----t~rl~elE~f----i~-g-------pN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1147 GKYEDLVKYLLMARKKVREPYID------SELIFAYAK-----TNRLTELEEF----IA-G-------PNVANIQQVGDR 1203 (1666)
T ss_pred             CcHHHHHHHHHHHHHhhcCccch------HHHHHHHHH-----hchHHHHHHH----hc-C-------CCchhHHHHhHH
Confidence            99999998888887764332100      123333432     2333322221    11 1       443344566676


Q ss_pred             HHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHH
Q 036703          301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA  351 (365)
Q Consensus       301 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  351 (365)
                      +...|.++.|+-+|..        +.-|..++..+...|++.-|...-++|
T Consensus      1204 cf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             HhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            7777777777766643        334555666666666666665555544

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.49  E-value=0.085  Score=48.81  Aligned_cols=303  Identities=12%  Similarity=0.114  Sum_probs=171.1

Q ss_pred             hhHHHHHHHHHHhCCC----chHHHHHHHHHHH-hcCChhHHHHHHHHHHhhCC--C-h----HHHHHHHHHHHHhccHH
Q 036703            3 DHGRNAWDRVVTLSPR----VDQLWNNYIRMEE-NLGNVAGARQIFERWMHWMP--D-H----EGWLSYIKFKLRYNEVQ   70 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~----~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p--~-~----~~~~~~~~~~~~~~~~~   70 (365)
                      ..|+..++-+++..+-    ...+...+|.++. ...+++.|+..+++++.+..  + .    ..-..++.++.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            3567778877743221    1456888999888 67899999999999987663  3 1    22345577777777666


Q ss_pred             HHHHHHHHHHHhCCcc-hHHH---HHHH--HHHHhhcchHHHHHHHHHHHhhhhc--CChhhHHHHHHHHHHHHHhcccc
Q 036703           71 RARHIFERLVQCHPYN-LSAW---INFA--DFEMKMGEVDRARNVYECAVEIFLA--DDHDEAEQLFVAFAKFEEMGCNC  142 (365)
Q Consensus        71 ~A~~~~~~~l~~~p~~-~~~~---~~~~--~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  142 (365)
                       |...+++.++...+. ...|   +.+.  .+....+++..|.+.++.+... ..  .++.....+...-+.++.   ..
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~-a~~~~d~~~~v~~~l~~~~l~l---~~  192 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQL-ANQRGDPAVFVLASLSEALLHL---RR  192 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHh---cC
Confidence             999999998865531 1222   2222  2222337999999999999887 42  321111222223344555   67


Q ss_pred             chhHHHHHHHHHHhccC------CC--chhHHHHHHHHHHH--HHcCCchhhhHHHHHHHHHHHHHHHH---cCC---C-
Q 036703          143 KETDRARCIYKFALDRI------PK--GRAEDLYRKFLAFE--KQYGDREGIEDAIAGKMRLQYEDGVR---KNP---M-  205 (365)
Q Consensus       143 ~~~~~A~~~~~~~l~~~------p~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~---~~p---~-  205 (365)
                      +..+.+.+..++++...      |.  .+...+|....++.  ...|+...+..     ....+++.++   ..|   . 
T Consensus       193 ~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~-----~L~~lq~~~~~~~~~~~w~~~  267 (608)
T PF10345_consen  193 GSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQ-----KLKQLQQFLDEIKKSPSWPSW  267 (608)
T ss_pred             CCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHHHHHhhcCccCCCc
Confidence            77777888887764321      11  12344555554443  34555444332     2222333222   111   0 


Q ss_pred             --C-----------------H---------H----HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-------ch-----
Q 036703          206 --N-----------------Y---------D----TWFDYIRLEERVGNQERVREVYERAIANVPP-------AE-----  241 (365)
Q Consensus       206 --~-----------------~---------~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-------~~-----  241 (365)
                        +                 .         +    +++.-+......+..++|.++++++++....       .+     
T Consensus       268 ~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~  347 (608)
T PF10345_consen  268 DEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLS  347 (608)
T ss_pred             CCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHH
Confidence              0                 0         0    1111122334556666888888888764211       11     


Q ss_pred             ---hhhHHHHhHHHHHH-HHHHHhhccCChhHHHHHHHHHHhccccCCC-cch--hHHHHHHHHHHHHHhCCCccHHHHH
Q 036703          242 ---EKRYWQRYIYLWIN-YALYKEVDAGDLERTRDVYRTLFIFYFSFSP-RME--ERRIFKKYIEMELCLGNIDPCRKLY  314 (365)
Q Consensus       242 ---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~A~~~~  314 (365)
                         ....|...+...+. +..+...-.+++..|....+.+......... ++.  .+.++...|..+...|+.+.|...|
T Consensus       348 ~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y  427 (608)
T PF10345_consen  348 EASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQY  427 (608)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence               11123222222111 2222224678898898888877765322211 101  1666777788888999999999999


Q ss_pred             H
Q 036703          315 E  315 (365)
Q Consensus       315 ~  315 (365)
                      .
T Consensus       428 ~  428 (608)
T PF10345_consen  428 Q  428 (608)
T ss_pred             h
Confidence            8

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.45  E-value=0.046  Score=44.92  Aligned_cols=232  Identities=14%  Similarity=0.073  Sum_probs=133.7

Q ss_pred             HhhcchHHHHHHHHHHHhhhh-cCC---hhhHHHHHHHHHHHHHhccccc-hhHHHHHHHHHHhccCCC-------c---
Q 036703           98 MKMGEVDRARNVYECAVEIFL-ADD---HDEAEQLFVAFAKFEEMGCNCK-ETDRARCIYKFALDRIPK-------G---  162 (365)
Q Consensus        98 ~~~~~~~~A~~~~~~a~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~-------~---  162 (365)
                      .+.|+++.|...+.++-.. . ..+   ...-..+.++.|.-..   ..+ +++.|...++++.+....       .   
T Consensus         4 ~~~~~~~~A~~~~~K~~~~-~~~~~~~~~~~La~~~yn~G~~l~---~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~   79 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDL-LNSLDPDMAEELARVCYNIGKSLL---SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDG   79 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhH-HhcCCcHHHHHHHHHHHHHHHHHH---HcCCChHHHHHHHHHHHHHHHhhhhccccCCcH
Confidence            3567777777777776655 3 111   1112445566666666   677 888888888888776311       0   


Q ss_pred             --hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-C
Q 036703          163 --RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVP-P  239 (365)
Q Consensus       163 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~  239 (365)
                        -...+...++..+...+..+.     ..+|..+.+.+-...|+.+.++.....+....++.+.+.+.+.+++...+ .
T Consensus        80 ~elr~~iL~~La~~~l~~~~~~~-----~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~  154 (278)
T PF08631_consen   80 SELRLSILRLLANAYLEWDTYES-----VEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS  154 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHH-----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc
Confidence              123345555666666666554     44688888888888999999888888877778999999999999999865 2


Q ss_pred             chhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHH-----HHHhCC------Cc
Q 036703          240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEM-----ELCLGN------ID  308 (365)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------~~  308 (365)
                      +..       ....+......  .......+...+...+.....     |.++.|....-+     ....++      .+
T Consensus       155 e~~-------~~~~l~~i~~l--~~~~~~~a~~~ld~~l~~r~~-----~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~  220 (278)
T PF08631_consen  155 ESN-------FDSILHHIKQL--AEKSPELAAFCLDYLLLNRFK-----SSEDQWLEKLVLTRVLLTTQSKDLSSSEKIE  220 (278)
T ss_pred             cch-------HHHHHHHHHHH--HhhCcHHHHHHHHHHHHHHhC-----CChhHHHHHHHHHHHHHHcCCccccchhHHH
Confidence            221       22333333221  334456676776666654222     221102221111     112222      22


Q ss_pred             cHHHHHHHHHhh--CcchH-------HHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703          309 PCRKLYEKYLEW--SPENC-------YAWSKYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       309 ~A~~~~~~al~~--~p~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                      ....+++...+.  .|-+.       .+..+.|.-..+.+++++|...|+-++
T Consensus       221 ~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  221 SLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            233333322211  12111       223344666777899999999999776

It is also involved in sporulation [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.44  E-value=0.0069  Score=45.24  Aligned_cols=111  Identities=15%  Similarity=0.089  Sum_probs=81.8

Q ss_pred             HHHHHHhCCCch---HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703            9 WDRVVTLSPRVD---QLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus         9 ~~~~l~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      .++....+|.+.   .+-..++..+...|++++|...++.++....+    .-+-..++.+....|.++.|...+.....
T Consensus        75 ~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~  154 (207)
T COG2976          75 AEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE  154 (207)
T ss_pred             HHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc
Confidence            344444444432   22445677778899999999999999865554    34556788999999999999998865433


Q ss_pred             hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      ..= ........|+++...|+-++|+..|++++.. .+++
T Consensus       155 ~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~-~~s~  192 (207)
T COG2976         155 ESW-AAIVAELRGDILLAKGDKQEARAAYEKALES-DASP  192 (207)
T ss_pred             ccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc-cCCh
Confidence            221 3445667799999999999999999999999 7543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.41  E-value=0.00038  Score=58.94  Aligned_cols=105  Identities=12%  Similarity=0.096  Sum_probs=92.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHH
Q 036703           27 IRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR  105 (365)
Q Consensus        27 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  105 (365)
                      +...+..++++.|+..|.++++++|+ ...|-..+..+.+.+++..|+.-+.++++.+|.....+..-|...+..+.+.+
T Consensus        11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~   90 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK   90 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence            45556678899999999999999998 66777777888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703          106 ARNVYECAVEIFLADDHDEAEQLFVAFAKFE  136 (365)
Q Consensus       106 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  136 (365)
                      |+..|+..... .|++    +.+...+..+.
T Consensus        91 A~~~l~~~~~l-~Pnd----~~~~r~~~Ec~  116 (476)
T KOG0376|consen   91 ALLDLEKVKKL-APND----PDATRKIDECN  116 (476)
T ss_pred             HHHHHHHhhhc-CcCc----HHHHHHHHHHH
Confidence            99999999999 9988    66666554443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.37  E-value=0.019  Score=48.84  Aligned_cols=146  Identities=14%  Similarity=0.097  Sum_probs=102.7

Q ss_pred             HHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh---------h-----CC------------C-hH---HHHHHHH
Q 036703           12 VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMH---------W-----MP------------D-HE---GWLSYIK   61 (365)
Q Consensus        12 ~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---------~-----~p------------~-~~---~~~~~~~   61 (365)
                      .++.+|...+++..++.++..+|+...|..+.+||+-         .     ++            + ..   +...++.
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~  111 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ  111 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence            4456799999999999999999999999999988863         1     11            1 12   3345566


Q ss_pred             HHHHhccHHHHHHHHHHHHHhCCc-chHHHHHHHHHHH-hhcchHHHHHHHHHHHhhhhcCC-hhhHHHHHHHHHHHHHh
Q 036703           62 FKLRYNEVQRARHIFERLVQCHPY-NLSAWINFADFEM-KMGEVDRARNVYECAVEIFLADD-HDEAEQLFVAFAKFEEM  138 (365)
Q Consensus        62 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~  138 (365)
                      ...+.|-+..|.++.+-++..+|. |+-....+.+.+. +.++++--+++++..... ...+ -...|..-+..+-.+. 
T Consensus       112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~-~~~~~~~~lPn~a~S~aLA~~-  189 (360)
T PF04910_consen  112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK-CYRNWLSLLPNFAFSIALAYF-  189 (360)
T ss_pred             HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh-hhhhhhhhCccHHHHHHHHHH-
Confidence            777899999999999999999998 7766666666655 467777777777765542 1110 0001234444444444 


Q ss_pred             ccccchh---------------HHHHHHHHHHhccCCC
Q 036703          139 GCNCKET---------------DRARCIYKFALDRIPK  161 (365)
Q Consensus       139 ~~~~~~~---------------~~A~~~~~~~l~~~p~  161 (365)
                        ..++.               ++|...+.+|+...|.
T Consensus       190 --~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  190 --RLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             --HhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence              44544               8999999999998886

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.34  E-value=0.11  Score=46.84  Aligned_cols=124  Identities=15%  Similarity=0.105  Sum_probs=70.4

Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 036703          197 EDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT  276 (365)
Q Consensus       197 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  276 (365)
                      +.....-|.+....-.+++++...|--++|.+.|-+.-  .|...        +..      +  ...++..+|.++.++
T Consensus       842 E~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pkaA--------v~t------C--v~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  842 EVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKAA--------VHT------C--VELNQWGEAVELAQR  903 (1189)
T ss_pred             HHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHHH--------HHH------H--HHHHHHHHHHHHHHh
Confidence            34444567777888888888888888888888776632  23221        111      1  244555666665544


Q ss_pred             HHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhcc-chhHHHHHH
Q 036703          277 LFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD-ETERARAIF  348 (365)
Q Consensus       277 a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~  348 (365)
                      ---         |. ..+....+.-....++.-+|++.++++-.. -+-..+...++.-+...+ .+.+..++|
T Consensus       904 ~~l---------~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~-~daarll~qmae~e~~K~~p~lr~KklY  967 (1189)
T KOG2041|consen  904 FQL---------PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRH-LDAARLLSQMAEREQEKYVPYLRLKKLY  967 (1189)
T ss_pred             ccc---------hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccc-hhHHHHHHHHhHHHhhccCCHHHHHHHH
Confidence            321         44 333444455555678888888888887332 224455555555444333 234444444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.011  Score=45.82  Aligned_cols=100  Identities=10%  Similarity=0.009  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHH--------hCCc----------chHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           55 GWLSYIKFKLRYNEVQRARHIFERLVQ--------CHPY----------NLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~--------~~p~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      +...-|+-+.+.|++.+|...|+.|+.        -.|.          ...++.++++++...|++-++++.....+..
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            444556666788999999999998765        2343          3456888999999999999999999999999


Q ss_pred             hhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703          117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                       .|.+    ..+++..|..+.   ..-+..+|..-|.+++...|.-
T Consensus       260 -~~~n----vKA~frRakAha---a~Wn~~eA~~D~~~vL~ldpsl  297 (329)
T KOG0545|consen  260 -HPGN----VKAYFRRAKAHA---AVWNEAEAKADLQKVLELDPSL  297 (329)
T ss_pred             -CCch----HHHHHHHHHHHH---hhcCHHHHHHHHHHHHhcChhh
Confidence             8888    999999999999   8889999999999999999875

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.30  E-value=0.036  Score=47.19  Aligned_cols=150  Identities=15%  Similarity=0.081  Sum_probs=92.7

Q ss_pred             HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC-----------C-----------hhh---HHHHHHHHH
Q 036703           79 LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD-----------D-----------HDE---AEQLFVAFA  133 (365)
Q Consensus        79 ~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------~-----------~~~---~~~~~~~~~  133 (365)
                      .++.+|.+.+.++.++.++..+|+...|.++.++|+-. +..           +           ..+   ...+...++
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~-~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA-FERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            35678888888888888888888888888888777644 110           0           111   123344566


Q ss_pred             HHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC-----CHH
Q 036703          134 KFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM-----NYD  208 (365)
Q Consensus       134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~-----~~~  208 (365)
                      ....   +.|-+..|.++.+-.++.+|..+...+....-.+..+.+.++-        -+..++........     -+.
T Consensus       111 ~~L~---~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~--------Li~~~~~~~~~~~~~~~~~lPn  179 (360)
T PF04910_consen  111 QSLG---RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQW--------LIDFSESPLAKCYRNWLSLLPN  179 (360)
T ss_pred             HHHH---hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHH--------HHHHHHhHhhhhhhhhhhhCcc
Confidence            6677   8999999999999999999985422222222223334444432        22233332221111     112


Q ss_pred             HHHHHHHHHHHhCCH---------------HHHHHHHHHHHhcCCCc
Q 036703          209 TWFDYIRLEERVGNQ---------------ERVREVYERAIANVPPA  240 (365)
Q Consensus       209 ~~~~~~~~~~~~~~~---------------~~A~~~~~~~~~~~p~~  240 (365)
                      .-+..+..+...++.               +.|...+.+|+...|.-
T Consensus       180 ~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v  226 (360)
T PF04910_consen  180 FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV  226 (360)
T ss_pred             HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence            344445555556665               89999999999999874

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.30  E-value=0.00056  Score=35.58  Aligned_cols=30  Identities=17%  Similarity=0.320  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 036703           55 GWLSYIKFKLRYNEVQRARHIFERLVQCHP   84 (365)
Q Consensus        55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p   84 (365)
                      +|..++.++...|++++|...|+++++.+|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344444455555555555555555554444

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.28  E-value=0.00073  Score=35.13  Aligned_cols=31  Identities=26%  Similarity=0.420  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCC
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMP   51 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p   51 (365)
                      .+|..+|.++...|++++|...|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3566666666666666666666666666555

...

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.23  E-value=0.0083  Score=39.40  Aligned_cols=65  Identities=8%  Similarity=-0.058  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHH
Q 036703            6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQ   70 (365)
Q Consensus         6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~   70 (365)
                      ...+++.+..+|++..+.+.++..+...|++++|+..+-.+++.+++   ...-..+..+....|.-+
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            56688889999999999999999999999999999999999988876   345555666665555533

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=97.20  E-value=0.19  Score=46.62  Aligned_cols=301  Identities=12%  Similarity=0.084  Sum_probs=169.0

Q ss_pred             hhHHHHHHHHHHh-hCCC----hHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCc--ch----HHHHHHHHHHHhhcch
Q 036703           36 VAGARQIFERWMH-WMPD----HEGWLSYIKFKL-RYNEVQRARHIFERLVQCHPY--NL----SAWINFADFEMKMGEV  103 (365)
Q Consensus        36 ~~~A~~~~~~al~-~~p~----~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~p~--~~----~~~~~~~~~~~~~~~~  103 (365)
                      +..|++.++-+++ ..+.    ..+.+.+|.++. ...+++.|+..+++++.....  -.    ..-..++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            4457888888873 3333    467888998876 678999999999999887643  22    2234557777777766


Q ss_pred             HHHHHHHHHHHhhhhcCChhhHHHHHHHHH--HHHHhccccchhHHHHHHHHHHhccC--CCchhHHHHHHHHH--HHHH
Q 036703          104 DRARNVYECAVEIFLADDHDEAEQLFVAFA--KFEEMGCNCKETDRARCIYKFALDRI--PKGRAEDLYRKFLA--FEKQ  177 (365)
Q Consensus       104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~--~~~~  177 (365)
                      . |...+++.++. ............+.+.  .+..   ..+++..|++.++.+....  +.+....+...+..  +...
T Consensus       117 ~-a~~~l~~~I~~-~~~~~~~~w~~~frll~~~l~~---~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~  191 (608)
T PF10345_consen  117 A-ALKNLDKAIED-SETYGHSAWYYAFRLLKIQLAL---QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR  191 (608)
T ss_pred             H-HHHHHHHHHHH-HhccCchhHHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence            6 99999999987 5442011122222222  2333   3479999999999888754  23322333333332  2333


Q ss_pred             cCCchhhhHHHHHHHHHHHHHHH------HcCC----CCHHHHHHHHHHH--HHhCCHHHHHHHHHH---HHhc---CC-
Q 036703          178 YGDREGIEDAIAGKMRLQYEDGV------RKNP----MNYDTWFDYIRLE--ERVGNQERVREVYER---AIAN---VP-  238 (365)
Q Consensus       178 ~~~~~~~~~~~~~~a~~~~~~~l------~~~p----~~~~~~~~~~~~~--~~~~~~~~A~~~~~~---~~~~---~p-  238 (365)
                      .+.+.+        +.+..+++.      +.+|    ....+|..+.++.  ...|++..+...+.+   .+..   .| 
T Consensus       192 ~~~~~d--------~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~  263 (608)
T PF10345_consen  192 RGSPDD--------VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPS  263 (608)
T ss_pred             CCCchh--------HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCcc
Confidence            443332        222333221      1122    2345677776653  556776666555433   3322   21 


Q ss_pred             --C---c-----------------hhhhHHH----HhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC------C
Q 036703          239 --P---A-----------------EEKRYWQ----RYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS------P  286 (365)
Q Consensus       239 --~---~-----------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~------~  286 (365)
                        .   +                 +....|-    .++-++..-+... ...+..++|.++++++++.-....      .
T Consensus       264 w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~-~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~  342 (608)
T PF10345_consen  264 WPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHN-LYKGSMDKSEKFLEKALKQIEKLKIKSPSAP  342 (608)
T ss_pred             CCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHH-hhccCchHHHHHHHHHHHHHHHhhccCCCCC
Confidence              0   0                 0000010    0111222222222 355666689999988887621111      0


Q ss_pred             cch-----hHHHHHH---------HHHHHHHhCCCccHHHHHHHHHhhC---cc------hHHHHHHHHHHHhhccchhH
Q 036703          287 RME-----ERRIFKK---------YIEMELCLGNIDPCRKLYEKYLEWS---PE------NCYAWSKYTELEKSLDETER  343 (365)
Q Consensus       287 ~~~-----~~~~~~~---------~~~~~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~~~~~~~~~g~~~~  343 (365)
                      ..+     +...|..         .+....-.+++..|....+.+.+..   |.      .+.+....|..+...|+.+.
T Consensus       343 ~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~  422 (608)
T PF10345_consen  343 SESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEA  422 (608)
T ss_pred             CcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHH
Confidence            001     0111222         2222345788989999888777652   22      36678888888999999999


Q ss_pred             HHHHHHH
Q 036703          344 ARAIFEL  350 (365)
Q Consensus       344 A~~~~~~  350 (365)
                      |...|.+
T Consensus       423 A~~~y~~  429 (608)
T PF10345_consen  423 ALYQYQK  429 (608)
T ss_pred             HHHHHhh
Confidence            9999983

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.15  E-value=0.1  Score=42.87  Aligned_cols=122  Identities=12%  Similarity=0.099  Sum_probs=83.2

Q ss_pred             HhcCChhHHHHHHHHHHhhC----CC-----hHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC----C---c-------c
Q 036703           31 ENLGNVAGARQIFERWMHWM----PD-----HEGWLSYIKFKLRYN-EVQRARHIFERLVQCH----P---Y-------N   86 (365)
Q Consensus        31 ~~~g~~~~A~~~~~~al~~~----p~-----~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~----p---~-------~   86 (365)
                      ..+|+.+.|...+.|+-...    |+     ....+..|......+ +++.|...++++.+.-    +   .       .
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46788888888888876543    33     234555666666777 8888888888887762    1   1       1


Q ss_pred             hHHHHHHHHHHHhhcch---HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           87 LSAWINFADFEMKMGEV---DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      ..+...++..+...+..   ++|..+.+.+... .|+.    +.++.....+..   +.++.+++.+.+.+++...+
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~----~~~~~L~l~il~---~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNK----PEVFLLKLEILL---KSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCC----cHHHHHHHHHHh---ccCChhHHHHHHHHHHHhcc
Confidence            23456667777776644   4556666666666 6665    777777777777   77888888888888888655

It is also involved in sporulation [].

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=97.14  E-value=0.00075  Score=34.70  Aligned_cols=32  Identities=44%  Similarity=0.822  Sum_probs=28.1

Q ss_pred             CCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703          305 GNIDPCRKLYEKYLEWSPENCYAWSKYTELEK  336 (365)
Q Consensus       305 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  336 (365)
                      |+++.|+.+|++++...|.++.+|..++.++.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~   32 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFEE   32 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence            46788999999999999999999999998764

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=97.12  E-value=0.00093  Score=33.41  Aligned_cols=27  Identities=26%  Similarity=0.667  Sum_probs=13.5

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRM   29 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~   29 (365)
                      ++.|+.+|++.+..+|+ +..|+.+|.+
T Consensus         3 ~dRAR~IyeR~v~~hp~-~k~WikyAkF   29 (32)
T PF02184_consen    3 FDRARSIYERFVLVHPE-VKNWIKYAKF   29 (32)
T ss_pred             HHHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence            34555555555555544 4555555443

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing

Probab=97.10  E-value=0.0014  Score=32.80  Aligned_cols=28  Identities=36%  Similarity=0.813  Sum_probs=17.1

Q ss_pred             hhHHHHHHHHHHhhCCChHHHHHHHHHH
Q 036703           36 VAGARQIFERWMHWMPDHEGWLSYIKFK   63 (365)
Q Consensus        36 ~~~A~~~~~~al~~~p~~~~~~~~~~~~   63 (365)
                      ++.|+.+|++.+...|++..|+.+|.+.
T Consensus         3 ~dRAR~IyeR~v~~hp~~k~WikyAkFE   30 (32)
T PF02184_consen    3 FDRARSIYERFVLVHPEVKNWIKYAKFE   30 (32)
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHhh
Confidence            4556666666666666666666666553

They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.03  E-value=0.0016  Score=33.49  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          208 DTWFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      ++++.+|.++...|++++|+..|++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367889999999999999999999999999974

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.97  E-value=0.003  Score=32.43  Aligned_cols=26  Identities=19%  Similarity=0.384  Sum_probs=10.6

Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC
Q 036703           59 YIKFKLRYNEVQRARHIFERLVQCHP   84 (365)
Q Consensus        59 ~~~~~~~~~~~~~A~~~~~~~l~~~p   84 (365)
                      +|.++...|++++|...|++++...|
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            33333334444444444444444443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=96.91  E-value=0.25  Score=43.05  Aligned_cols=207  Identities=11%  Similarity=0.058  Sum_probs=130.8

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703           17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF   96 (365)
Q Consensus        17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~   96 (365)
                      |-+......+..++-...+..-...++.+++....+-..+..++.+|... ..++--.+.++.++.+-++...-..++..
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~  141 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK  141 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence            44444555555555555566667788888888887777888899999877 45778888999999999888888888988


Q ss_pred             HHhhcchHHHHHHHHHHHhhhhcCC-hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 036703           97 EMKMGEVDRARNVYECAVEIFLADD-HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE  175 (365)
Q Consensus        97 ~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  175 (365)
                      |.+ ++...+...|.+++....|.. ...-.++|..+..+-     ..+.+.-+....+.-....... ..+.+..  .+
T Consensus       142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i-----~dD~D~fl~l~~kiqt~lg~~~-~~Vl~qd--v~  212 (711)
T COG1747         142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI-----GDDKDFFLRLQKKIQTKLGEGR-GSVLMQD--VY  212 (711)
T ss_pred             HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc-----cccHHHHHHHHHHHHHhhccch-HHHHHHH--HH
Confidence            887 888899999999988833421 011234666554421     2345555555544443333321 1222222  22


Q ss_pred             HHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------------------hCCHHHHHHHHHHHHh
Q 036703          176 KQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER--------------------VGNQERVREVYERAIA  235 (365)
Q Consensus       176 ~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~~~~  235 (365)
                      ..+...+.     +.+|+.+..-.++.+..+..+...++..+..                    -.++..+..-|++.+.
T Consensus       213 ~~Ys~~eN-----~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~  287 (711)
T COG1747         213 KKYSENEN-----WTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMH  287 (711)
T ss_pred             HHhccccC-----HHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhe
Confidence            22222111     3468888888888888887777777766554                    3455566666666554


Q ss_pred             cCC
Q 036703          236 NVP  238 (365)
Q Consensus       236 ~~p  238 (365)
                      ...
T Consensus       288 f~e  290 (711)
T COG1747         288 FDE  290 (711)
T ss_pred             ecc
Confidence            433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.91  E-value=0.0025  Score=33.64  Aligned_cols=25  Identities=24%  Similarity=0.314  Sum_probs=12.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHH
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWM   47 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al   47 (365)
                      |..+|.++.+.|++++|+.+|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4445555555555555555555533

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.83  E-value=0.0014  Score=53.18  Aligned_cols=81  Identities=14%  Similarity=0.099  Sum_probs=38.1

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      ++|++.|.+++.++|.+..++...+.+++..++...|+.-+..+++++|+ ..-+...+......|++++|...+..+++
T Consensus       131 ~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~k  210 (377)
T KOG1308|consen  131 DTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACK  210 (377)
T ss_pred             hhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHh
Confidence            44444555555555554444555555555555555555555555555554 22222233333334455555555555444


Q ss_pred             hC
Q 036703           82 CH   83 (365)
Q Consensus        82 ~~   83 (365)
                      .+
T Consensus       211 ld  212 (377)
T KOG1308|consen  211 LD  212 (377)
T ss_pred             cc
Confidence            43

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=96.83  E-value=0.0033  Score=32.15  Aligned_cols=30  Identities=37%  Similarity=0.916  Sum_probs=16.2

Q ss_pred             cHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703           68 EVQRARHIFERLVQCHPYNLSAWINFADFE   97 (365)
Q Consensus        68 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~   97 (365)
                      +.+.|+.+|++++...|.++.+|..++.+.
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e   31 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEFE   31 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            445555555555555555555555555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.014  Score=47.46  Aligned_cols=97  Identities=14%  Similarity=0.077  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhh---CCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHW---MPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA   94 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~   94 (365)
                      +.-+..-|.-+.+..++..|+..|.++++.   +|+  ..++...+-+....|++..|+.-..+++..+|++..++++-+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            344666788888888999999999999974   344  467888888888899999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhh
Q 036703           95 DFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        95 ~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      .++.....+..|....+..+..
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999888888776

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.78  E-value=0.0061  Score=48.83  Aligned_cols=56  Identities=21%  Similarity=0.334  Sum_probs=28.9

Q ss_pred             HhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      +.|+.++|..+|+.++...|+++++...+|.+....++.-+|-.+|-+|+.. .|.+
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti-sP~n  183 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI-SPGN  183 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee-CCCc
Confidence            3445555555555555555555555555555555445555555555555555 4444

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1

Probab=96.75  E-value=0.062  Score=37.61  Aligned_cols=115  Identities=17%  Similarity=0.332  Sum_probs=69.4

Q ss_pred             HHHHHHHHh-ccCCCchhHHHHHHHHHHHHHc---CCchhhhHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHhC
Q 036703          148 ARCIYKFAL-DRIPKGRAEDLYRKFLAFEKQY---GDREGIEDAIAGKMRLQYEDGV--RKNPMNYDTWFDYIRLEERVG  221 (365)
Q Consensus       148 A~~~~~~~l-~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~  221 (365)
                      -+..|+..| .....++...+|..++......   |.....-..+++++...|...-  +.+|....+|..+++..   +
T Consensus         4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---~   80 (125)
T smart00777        4 QRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---D   80 (125)
T ss_pred             HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---C
Confidence            345566555 4344444578999999887643   2222211223344444443321  23455567888888763   3


Q ss_pred             CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 036703          222 NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT  276 (365)
Q Consensus       222 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  276 (365)
                      +   ..++|.-+....-...       ...++..+|.++| ..|++.+|.++|+.
T Consensus        81 d---p~~if~~L~~~~IG~~-------~AlfYe~~A~~lE-~~g~~~~A~~iy~~  124 (125)
T smart00777       81 E---PRELFQFLYSKGIGTK-------LALFYEEWAQLLE-AAGRYKKADEVYQL  124 (125)
T ss_pred             C---HHHHHHHHHHCCcchh-------hHHHHHHHHHHHH-HcCCHHHHHHHHHc
Confidence            3   5667777666533322       2448888999987 89999999999875

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.29  Score=43.24  Aligned_cols=151  Identities=15%  Similarity=0.101  Sum_probs=105.4

Q ss_pred             hhhHHHHHHHHHHh------------CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh-----h---------------
Q 036703            2 IDHGRNAWDRVVTL------------SPRVDQLWNNYIRMEENLGNVAGARQIFERWMH-----W---------------   49 (365)
Q Consensus         2 ~~~A~~~~~~~l~~------------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-----~---------------   49 (365)
                      |++|...|.-++..            +|...+..+.++.+...+|+.+.|..+.+|++=     .               
T Consensus       254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y  333 (665)
T KOG2422|consen  254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPY  333 (665)
T ss_pred             HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcc
Confidence            56677777777664            356678899999999999999988887777762     1               


Q ss_pred             -CCChH----HHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-chHHHHHHHHHHHh-hcchHHHHHHHHHHHh-----hh
Q 036703           50 -MPDHE----GWLSYIKFKLRYNEVQRARHIFERLVQCHPY-NLSAWINFADFEMK-MGEVDRARNVYECAVE-----IF  117 (365)
Q Consensus        50 -~p~~~----~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~-----~~  117 (365)
                       .|...    +...+.....+.|=+..|.+..+-+++.+|. +|-....+.++|.- ..+|+=-+++++..-.     . 
T Consensus       334 ~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~-  412 (665)
T KOG2422|consen  334 IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQ-  412 (665)
T ss_pred             cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhh-
Confidence             12222    1223344455678899999999999999998 77777777776654 5666666666666522     2 


Q ss_pred             hcCChhhHHHHHHHHHHHHHhccccch---hHHHHHHHHHHhccCCC
Q 036703          118 LADDHDEAEQLFVAFAKFEEMGCNCKE---TDRARCIYKFALDRIPK  161 (365)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~p~  161 (365)
                      .|+     ...-..+|.++.   ....   ...|+..+.+|++..|.
T Consensus       413 ~PN-----~~yS~AlA~f~l---~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  413 LPN-----FGYSLALARFFL---RKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             cCC-----chHHHHHHHHHH---hcCChhhHHHHHHHHHHHHHhCcH
Confidence            333     334456677776   5544   67899999999998885

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.70  E-value=0.46  Score=43.15  Aligned_cols=128  Identities=15%  Similarity=0.155  Sum_probs=68.4

Q ss_pred             HHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHH----------HHHHHHHHhccHHHHHHHHHHHHHh
Q 036703           13 VTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWL----------SYIKFKLRYNEVQRARHIFERLVQC   82 (365)
Q Consensus        13 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~~~~~~~~~~~~~A~~~~~~~l~~   82 (365)
                      ++.+|. +.+|..++......-.++-|...|-+.-.. |....-.          ..+.+..-.|++++|...|-.+-..
T Consensus       686 iEdnPH-prLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr  763 (1189)
T KOG2041|consen  686 IEDNPH-PRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR  763 (1189)
T ss_pred             HhcCCc-hHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh
Confidence            344666 778888887777777777777777665322 2211111          1223333346777777776443222


Q ss_pred             CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703           83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL  156 (365)
Q Consensus        83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  156 (365)
                      +- -       ..+..+.|++-+..++++..-.-   .++.....+|.++|..+.   ....+++|.++|..+-
T Consensus       764 DL-A-------ielr~klgDwfrV~qL~r~g~~d---~dD~~~e~A~r~ig~~fa---~~~~We~A~~yY~~~~  823 (1189)
T KOG2041|consen  764 DL-A-------IELRKKLGDWFRVYQLIRNGGSD---DDDEGKEDAFRNIGETFA---EMMEWEEAAKYYSYCG  823 (1189)
T ss_pred             hh-h-------HHHHHhhhhHHHHHHHHHccCCC---cchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcc
Confidence            21 1       12333444444444444332111   112233567777777777   7777777777777653

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.67  E-value=0.017  Score=50.62  Aligned_cols=92  Identities=10%  Similarity=0.153  Sum_probs=82.4

Q ss_pred             HHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHH
Q 036703           29 MEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRA  106 (365)
Q Consensus        29 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A  106 (365)
                      .....|+...|++.+.+|+...|.  ......++.+....|-...|..++.+++.++...+-.++.+|..+....+.+.|
T Consensus       616 ywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a  695 (886)
T KOG4507|consen  616 YWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA  695 (886)
T ss_pred             eeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence            334579999999999999999998  345678899988888888899999999999987888999999999999999999


Q ss_pred             HHHHHHHHhhhhcCC
Q 036703          107 RNVYECAVEIFLADD  121 (365)
Q Consensus       107 ~~~~~~a~~~~~~~~  121 (365)
                      ++.|+.|++. .|++
T Consensus       696 ~~~~~~a~~~-~~~~  709 (886)
T KOG4507|consen  696 LEAFRQALKL-TTKC  709 (886)
T ss_pred             HHHHHHHHhc-CCCC
Confidence            9999999999 8887

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.66  E-value=0.0022  Score=48.94  Aligned_cols=59  Identities=24%  Similarity=0.323  Sum_probs=49.5

Q ss_pred             HHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCC
Q 036703          301 ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDL  359 (365)
Q Consensus       301 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~  359 (365)
                      ..+.++.+.|.+.|.+++.+-|+....|..++....+.|+++.|.+.|++.++.+|.|.
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            34567888888888888888888888888888888888888888888888888888665

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.0095  Score=48.33  Aligned_cols=97  Identities=11%  Similarity=0.059  Sum_probs=79.3

Q ss_pred             HHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHH
Q 036703          253 WINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK  330 (365)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  330 (365)
                      +..-|..+ +..+++..|+..|.++++..-.+    |+  ..+|.+-+.+..-.|++..|+.-..+++..+|++..++..
T Consensus        84 ~KeeGN~~-fK~Kryk~A~~~Yt~Glk~kc~D----~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   84 YKEEGNEY-FKEKRYKDAVESYTEGLKKKCAD----PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHhHHH-HHhhhHHHHHHHHHHHHhhcCCC----ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            33345554 57889999999999999984333    44  6778888888889999999999999999999999999999


Q ss_pred             HHHHHhhccchhHHHHHHHHHhcC
Q 036703          331 YTELEKSLDETERARAIFELAIAQ  354 (365)
Q Consensus       331 ~~~~~~~~g~~~~A~~~~~~a~~~  354 (365)
                      -+.+...+..+.+|....+..+..
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhh
Confidence            999999998877777776665543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.66  E-value=0.0053  Score=32.35  Aligned_cols=23  Identities=9%  Similarity=0.121  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHH
Q 036703           56 WLSYIKFKLRYNEVQRARHIFER   78 (365)
Q Consensus        56 ~~~~~~~~~~~~~~~~A~~~~~~   78 (365)
                      |..+|.++...|++++|+.+|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34445555555555555555555

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.23  Score=39.27  Aligned_cols=226  Identities=10%  Similarity=0.060  Sum_probs=134.2

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHH-HHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG-NVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQ-RARHIFERL   79 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~-~A~~~~~~~   79 (365)
                      ++|..+-+.++..+|.+..+|.-.-.+....+ +..+-...+.+.++-+|. -.+|...-.+....|++. +-.++.+.+
T Consensus        60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~  139 (318)
T KOG0530|consen   60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM  139 (318)
T ss_pred             HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence            45777777788888888888776655555443 566677777777877777 577877766666777777 677778888


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHh--c-cccchhHHHHHHHHHHh
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM--G-CNCKETDRARCIYKFAL  156 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~A~~~~~~~l  156 (365)
                      +..+..+..+|...--+....+.++.-+.+..+.++. .--+    -.+|...--+...  + ...-..+.-+.+..+.|
T Consensus       140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~-Di~N----NSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I  214 (318)
T KOG0530|consen  140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE-DIRN----NSAWNQRYFVITNTKGVISKAELERELNYTKDKI  214 (318)
T ss_pred             HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH-hhhc----cchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence            8888778888877776777777777777777777776 3332    3444421110000  0 01123445566777888


Q ss_pred             ccCCCchhHHHHHHHHHHHHH-cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH------HhCCHH---HH
Q 036703          157 DRIPKGRAEDLYRKFLAFEKQ-YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE------RVGNQE---RV  226 (365)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~------~~~~~~---~A  226 (365)
                      ...|.+.  ..|.-+..+... .|-...  ...++-+..++   ++....++.++..+.+++.      ..+.-+   +|
T Consensus       215 ~~vP~Ne--SaWnYL~G~l~~d~gl~s~--s~vv~f~~~l~---~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a  287 (318)
T KOG0530|consen  215 LLVPNNE--SAWNYLKGLLELDSGLSSD--SKVVSFVENLY---LQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKA  287 (318)
T ss_pred             HhCCCCc--cHHHHHHHHHHhccCCcCC--chHHHHHHHHh---hccCCCChhHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            8999984  567777666654 441100  00112222232   2333445556656666552      122333   45


Q ss_pred             HHHHHHHH-hcCCCc
Q 036703          227 REVYERAI-ANVPPA  240 (365)
Q Consensus       227 ~~~~~~~~-~~~p~~  240 (365)
                      .++|+..- +.+|-.
T Consensus       288 ~~ly~~La~~~DpiR  302 (318)
T KOG0530|consen  288 VKLYEDLAIKVDPIR  302 (318)
T ss_pred             HHHHHHHhhccCcHH
Confidence            55665543 445543

>PRK10941 hypothetical protein; Provisional

Probab=96.65  E-value=0.0088  Score=48.26  Aligned_cols=69  Identities=14%  Similarity=0.141  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703          292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE  361 (365)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~  361 (365)
                      .+..++-..+.+.++++.|..+.++++...|+++.-|...|.++.+.|....|..-++.-++++| +.|.
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P-~dp~  250 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP-EDPI  250 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC-Cchh
Confidence            34455666788899999999999999999999999999999999999999999999999999999 6554

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.62  E-value=0.0075  Score=48.36  Aligned_cols=72  Identities=19%  Similarity=0.210  Sum_probs=63.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703           24 NNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD   95 (365)
Q Consensus        24 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~   95 (365)
                      ...+.-..+.|+.++|..+|+.|+.+.|. +++...++.+....++.-+|..+|-+++.++|.+.++....+.
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            33445556789999999999999999999 8999999999999999999999999999999999888766543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.25  Score=39.06  Aligned_cols=193  Identities=12%  Similarity=0.093  Sum_probs=131.3

Q ss_pred             HHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchH-H
Q 036703           29 MEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRY-NEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVD-R  105 (365)
Q Consensus        29 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~-~  105 (365)
                      +..+......|.++-+.++.++|- -..|.-.-.+.... .+..+-...+...++.+|.+..+|...-.+....|+.. +
T Consensus        52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r  131 (318)
T KOG0530|consen   52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR  131 (318)
T ss_pred             HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence            344556678899999999999998 57776655554443 36778888999999999999999999888888888877 7


Q ss_pred             HHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHH-HHHHcCCchhh
Q 036703          106 ARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA-FEKQYGDREGI  184 (365)
Q Consensus       106 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~-~~~~~~~~~~~  184 (365)
                      -+++.+.++.. ...+    ..+|...--+..   .-+.++.-+.+-.+.++.+--+.  ..|..--- +-...|-.+  
T Consensus       132 ELef~~~~l~~-DaKN----YHaWshRqW~~r---~F~~~~~EL~y~~~Lle~Di~NN--SAWN~Ryfvi~~~~~~~~--  199 (318)
T KOG0530|consen  132 ELEFTKLMLDD-DAKN----YHAWSHRQWVLR---FFKDYEDELAYADELLEEDIRNN--SAWNQRYFVITNTKGVIS--  199 (318)
T ss_pred             hHHHHHHHHhc-cccc----hhhhHHHHHHHH---HHhhHHHHHHHHHHHHHHhhhcc--chhheeeEEEEeccCCcc--
Confidence            78888888888 6666    778877766666   66778888887777776543332  23332110 000112111  


Q ss_pred             hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hC--CHHHHHHHHHHHH
Q 036703          185 EDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER-VG--NQERVREVYERAI  234 (365)
Q Consensus       185 ~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~-~~--~~~~A~~~~~~~~  234 (365)
                       ...++.-.....+.+...|+|.++|..+.-++.. .|  ...+.........
T Consensus       200 -~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~  251 (318)
T KOG0530|consen  200 -KAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY  251 (318)
T ss_pred             -HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence             1122334456677888999999999998888764 44  2334444444444

>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1

Probab=96.50  E-value=0.16  Score=35.54  Aligned_cols=111  Identities=14%  Similarity=0.295  Sum_probs=73.1

Q ss_pred             HHHHHHHHH-hc-CCCchhhhHHHHhHHHHHHHHHHHhhc--c-CChhHHHHHHHHHHhccccCCCcc--hh-HHHHHHH
Q 036703          226 VREVYERAI-AN-VPPAEEKRYWQRYIYLWINYALYKEVD--A-GDLERTRDVYRTLFIFYFSFSPRM--EE-RRIFKKY  297 (365)
Q Consensus       226 A~~~~~~~~-~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~a~~~~~~a~~~~~~~~~~~--~~-~~~~~~~  297 (365)
                      -+..|+..+ .. ..++|        +.+|..+..+.+-.  . +.-..-..+++++++...+...--  |. ..+|..+
T Consensus         4 ~r~~~e~~i~~~~~~dDP--------L~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~y   75 (125)
T smart00777        4 QRQAFEQELQDLYEGDDP--------LDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKY   75 (125)
T ss_pred             HHHHHHHHHHhcccCCCC--------hHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHH
Confidence            355666666 32 22333        55888888876411  2 234455677888887632221110  23 4667777


Q ss_pred             HHHHHHhCCCccHHHHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHH
Q 036703          298 IEMELCLGNIDPCRKLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFEL  350 (365)
Q Consensus       298 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  350 (365)
                      ++.      .++++.+|..+...  ....+.++..+|.++...|++.+|.++|+.
T Consensus        76 a~~------~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~  124 (125)
T smart00777       76 ADN------CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL  124 (125)
T ss_pred             HHh------cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            764      35688888888765  455788999999999999999999999975

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.49  E-value=0.069  Score=40.37  Aligned_cols=106  Identities=14%  Similarity=0.047  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCc
Q 036703          208 DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR  287 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~  287 (365)
                      .++..+|..+.+.|+.+.|.+.|.++...+.....      .+.+++...... ...+++..+.....++-....... -
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~------~id~~l~~irv~-i~~~d~~~v~~~i~ka~~~~~~~~-d  108 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH------KIDMCLNVIRVA-IFFGDWSHVEKYIEKAESLIEKGG-D  108 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH------HHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHhccc-h
Confidence            56788999999999999999999999887655443      266777777775 678999999999888877632211 1


Q ss_pred             chh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703          288 MEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWS  321 (365)
Q Consensus       288 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  321 (365)
                      |.. ..+-..-|-.++..++|..|-..|-.+....
T Consensus       109 ~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  109 WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            111 3333344445567889999988887775443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.38  E-value=0.087  Score=39.85  Aligned_cols=103  Identities=11%  Similarity=0.123  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc---chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC--ChhhHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPY---NLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD--DHDEAEQL  128 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~  128 (365)
                      ..+..+++++.+.|+.+.|.+.|.++......   -.++++.+..+....+++..+.....++-.. ...  +......+
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~-~~~~~d~~~~nrl  115 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL-IEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhccchHHHHHHH
Confidence            56667777777777777777777777665432   2455666666677777777777777776655 222  11111222


Q ss_pred             HHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703          129 FVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      -..-|..+.   ..+++.+|-..|-.+.....
T Consensus       116 k~~~gL~~l---~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  116 KVYEGLANL---AQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HHHHHHHHH---HhchHHHHHHHHHccCcCCC
Confidence            333344445   66788888888777665443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.34  E-value=0.81  Score=41.85  Aligned_cols=255  Identities=12%  Similarity=0.023  Sum_probs=133.1

Q ss_pred             ccHHHHHHHHHHHHHh-----CCcchHHHHHHHHHHHhhc-----chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH
Q 036703           67 NEVQRARHIFERLVQC-----HPYNLSAWINFADFEMKMG-----EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE  136 (365)
Q Consensus        67 ~~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  136 (365)
                      .|.+.|...|+.+...     .-..+.....+|.+|.+..     +.+.|..+|.++... ..      +...+.+|.++
T Consensus       263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g~------~~a~~~lg~~~  335 (552)
T KOG1550|consen  263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-GN------PDAQYLLGVLY  335 (552)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-CC------chHHHHHHHHH
Confidence            4666666666666541     0113445566677766632     456677777777766 22      33555556665


Q ss_pred             HhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH-HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 036703          137 EMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK-QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIR  215 (365)
Q Consensus       137 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~  215 (365)
                      ..+....++..|.++|..|....-.    .....++.++. ..|....     ..+|...|.++-+.+  ++.+...++.
T Consensus       336 ~~g~~~~d~~~A~~yy~~Aa~~G~~----~A~~~la~~y~~G~gv~r~-----~~~A~~~~k~aA~~g--~~~A~~~~~~  404 (552)
T KOG1550|consen  336 ETGTKERDYRRAFEYYSLAAKAGHI----LAIYRLALCYELGLGVERN-----LELAFAYYKKAAEKG--NPSAAYLLGA  404 (552)
T ss_pred             HcCCccccHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhCCCcCCC-----HHHHHHHHHHHHHcc--ChhhHHHHHH
Confidence            5110013456777777777654322    22333333222 2222221     336777777777765  3344444444


Q ss_pred             HHHH-hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHH-HH---hhccCChhHHHHHHHHHHhccccCCCcchh
Q 036703          216 LEER-VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL-YK---EVDAGDLERTRDVYRTLFIFYFSFSPRMEE  290 (365)
Q Consensus       216 ~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~  290 (365)
                      ++.. .+.++.+...+......--.....      ...++.... ..   .....+...+...+.++...        -.
T Consensus       405 ~~~~g~~~~~~~~~~~~~~a~~g~~~~q~------~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~--------g~  470 (552)
T KOG1550|consen  405 FYEYGVGRYDTALALYLYLAELGYEVAQS------NAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ--------GN  470 (552)
T ss_pred             HHHHccccccHHHHHHHHHHHhhhhHHhh------HHHHHHHhccccccccccccchhHHHHHHHHHHhc--------cC
Confidence            4322 255555444443333321111100      001111000 00   00122455666666666554        22


Q ss_pred             HHHHHHHHHHHHH----hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh-cc--chhHHHHHHHHHhcCcC
Q 036703          291 RRIFKKYIEMELC----LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS-LD--ETERARAIFELAIAQPI  356 (365)
Q Consensus       291 ~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g--~~~~A~~~~~~a~~~~~  356 (365)
                      ......+++++..    ..+++.|...|.++....   .....+++.++.. .|  .+..|...|+++...+.
T Consensus       471 ~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~  540 (552)
T KOG1550|consen  471 ADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDS  540 (552)
T ss_pred             HHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCc
Confidence            4455566666543    346889999999998776   7777888877765 22  26889999999887665

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.28  E-value=0.022  Score=32.89  Aligned_cols=42  Identities=24%  Similarity=0.227  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHH
Q 036703          294 FKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELE  335 (365)
Q Consensus       294 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  335 (365)
                      ...++..+.+.|++++|+.+.+.+++..|+|.++......+.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~   45 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE   45 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence            455667778999999999999999999999988766554443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.21  E-value=0.13  Score=37.49  Aligned_cols=79  Identities=14%  Similarity=0.027  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA  133 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  133 (365)
                      ...+.....-...++.+.+..++.-+-...|..+.+-+.-+.++...|++.+|+.+++.+... .|..    +..--.++
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-~~~~----p~~kALlA   85 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-APGF----PYAKALLA   85 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-CCCC----hHHHHHHH
Confidence            444555666667778888888888888888888888888888888888888888888887777 6554    44444444


Q ss_pred             HHHH
Q 036703          134 KFEE  137 (365)
Q Consensus       134 ~~~~  137 (365)
                      .++.
T Consensus        86 ~CL~   89 (160)
T PF09613_consen   86 LCLY   89 (160)
T ss_pred             HHHH
Confidence            4444

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.20  E-value=0.0084  Score=45.97  Aligned_cols=57  Identities=16%  Similarity=0.434  Sum_probs=36.2

Q ss_pred             HHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Q 036703           30 EENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN   86 (365)
Q Consensus        30 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~   86 (365)
                      ....++.+.|.+.|.+++.+.|. ...|..++....+.|+++.|...|++.++++|.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34455666666666666666666 5666666666666666666666666666666644

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.16  E-value=0.068  Score=35.12  Aligned_cols=47  Identities=21%  Similarity=0.192  Sum_probs=32.4

Q ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703           73 RHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD  120 (365)
Q Consensus        73 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  120 (365)
                      ...+++.++.+|++....+.++..+...|+++.|++.+-.+++. .+.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~-dr~   54 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR-DRD   54 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Ccc
Confidence            34566777777777777777777777777777777777777776 544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.11  E-value=0.21  Score=33.84  Aligned_cols=91  Identities=13%  Similarity=0.085  Sum_probs=66.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhhCCC-hHHH---HHHHHHHHHhc-----------cHHHHHHHHHHHHHhCCcchHHH
Q 036703           26 YIRMEENLGNVAGARQIFERWMHWMPD-HEGW---LSYIKFKLRYN-----------EVQRARHIFERLVQCHPYNLSAW   90 (365)
Q Consensus        26 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~---~~~~~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~~   90 (365)
                      .+.-+...||.-+|+++.+..+..+++ ...|   ..-|.++..+.           -.-.+.+.|.++....|+.+...
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            356677889999999999999988887 3333   23344443322           23458888999999999888888


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           91 INFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      +.+|+-+.....++++..--++++..
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            88888766667777777777777765

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.09  E-value=0.81  Score=39.43  Aligned_cols=59  Identities=10%  Similarity=0.022  Sum_probs=48.1

Q ss_pred             HHHHHHHHHH--HHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHH
Q 036703          291 RRIFKKYIEM--ELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFEL  350 (365)
Q Consensus       291 ~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  350 (365)
                      .++-+.+++.  ....|++.++.-.-.=..+..| ++.++..+|.+.....++++|..++..
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            4455555544  4578999988887777788899 999999999999999999999998864

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>smart00028 TPR Tetratricopeptide repeats

Probab=96.08  E-value=0.013  Score=29.48  Aligned_cols=30  Identities=20%  Similarity=0.197  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhhCC
Q 036703           22 LWNNYIRMEENLGNVAGARQIFERWMHWMP   51 (365)
Q Consensus        22 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p   51 (365)
                      +|..+|.++...|++++|...|+++++..|
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            344455555555555555555555554444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.07  E-value=1.3  Score=41.61  Aligned_cols=302  Identities=12%  Similarity=0.025  Sum_probs=164.4

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-----chHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY-----NLSAWIN   92 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~   92 (365)
                      .+....-+..+...|.+++|+...-.|  -+|.  ..+....+.-....++..    .+..+++.-|.     +|.+.+.
T Consensus       347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lvll  420 (894)
T COG2909         347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLVLL  420 (894)
T ss_pred             hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHHHH
Confidence            566777777777888888877655433  2233  222222222222233332    33444444443     4566667


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhhhcCC-hh----hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch---h
Q 036703           93 FADFEMKMGEVDRARNVYECAVEIFLADD-HD----EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR---A  164 (365)
Q Consensus        93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~  164 (365)
                      .+-......++.+|..+..++... .|.. ++    .....--..+.+..   ..|+++.|.++.+.++...|...   .
T Consensus       421 ~aW~~~s~~r~~ea~~li~~l~~~-l~~~~~~~~~~l~ae~~aL~a~val---~~~~~e~a~~lar~al~~L~~~~~~~r  496 (894)
T COG2909         421 QAWLLASQHRLAEAETLIARLEHF-LKAPMHSRQGDLLAEFQALRAQVAL---NRGDPEEAEDLARLALVQLPEAAYRSR  496 (894)
T ss_pred             HHHHHHHccChHHHHHHHHHHHHH-hCcCcccchhhHHHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhcccccchhh
Confidence            777777889999999999998887 5542 01    11122233456666   88999999999999999888753   2


Q ss_pred             HHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc----CCCCHHHHHHH--HHHHHHhCCHHHH--HHHHHHH---
Q 036703          165 EDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK----NPMNYDTWFDY--IRLEERVGNQERV--REVYERA---  233 (365)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~----~p~~~~~~~~~--~~~~~~~~~~~~A--~~~~~~~---  233 (365)
                      .......+....-.|+..        +|+...+++.+.    +.....+|..+  +.+...+|+...+  ...|...   
T Consensus       497 ~~~~sv~~~a~~~~G~~~--------~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q  568 (894)
T COG2909         497 IVALSVLGEAAHIRGELT--------QALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQ  568 (894)
T ss_pred             hhhhhhhhHHHHHhchHH--------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            233444455555566644        566666665554    33344566555  4456777733222  2222222   


Q ss_pred             -HhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHHHhCCCccH
Q 036703          234 -IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMELCLGNIDPC  310 (365)
Q Consensus       234 -~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A  310 (365)
                       +...|.+.-         .....+..+. ..-+.+.+..-..++++........ |.  .-....++.++...|+.++|
T Consensus       569 ~l~q~~~~~f---------~~~~r~~ll~-~~~r~~~~~~ear~~~~~~~~~~~~-~~~~~~~~~~LA~l~~~~Gdl~~A  637 (894)
T COG2909         569 HLEQKPRHEF---------LVRIRAQLLR-AWLRLDLAEAEARLGIEVGSVYTPQ-PLLSRLALSMLAELEFLRGDLDKA  637 (894)
T ss_pred             Hhhhcccchh---------HHHHHHHHHH-HHHHHhhhhHHhhhcchhhhhcccc-hhHHHHHHHHHHHHHHhcCCHHHH
Confidence             122232210         1111222211 1112444444444444432111100 22  12234788889999999999


Q ss_pred             HHHHHHHHhhCcch--HHHHH-----HHHHHHhhccchhHHHHHHHH
Q 036703          311 RKLYEKYLEWSPEN--CYAWS-----KYTELEKSLDETERARAIFEL  350 (365)
Q Consensus       311 ~~~~~~al~~~p~~--~~~~~-----~~~~~~~~~g~~~~A~~~~~~  350 (365)
                      ...........-++  ...|.     --..+....|+.+.+.....+
T Consensus       638 ~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         638 LAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence            99999887663222  11222     122334457888888887766

>smart00028 TPR Tetratricopeptide repeats

Probab=96.07  E-value=0.0081  Score=30.25  Aligned_cols=29  Identities=34%  Similarity=0.439  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHhhCc
Q 036703          294 FKKYIEMELCLGNIDPCRKLYEKYLEWSP  322 (365)
Q Consensus       294 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p  322 (365)
                      +..+|.++...|++++|...|+++++..|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            34444444444455555555544444444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.05  E-value=1.1  Score=40.53  Aligned_cols=59  Identities=15%  Similarity=0.170  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHH--------------hCCcchHHHHHHHHHHHhhcchHHHHHHHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQ--------------CHPYNLSAWINFADFEMKMGEVDRARNVYECA  113 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  113 (365)
                      .-|..++.-....=+++-|+..|.+...              .....| --..+|..+.-.|++.+|-++|.+.
T Consensus       586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~  658 (1081)
T KOG1538|consen  586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRS  658 (1081)
T ss_pred             chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHc
Confidence            4466666555555566666666654321              111111 1234455556667777777776653

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.92  E-value=0.3  Score=33.15  Aligned_cols=91  Identities=19%  Similarity=0.090  Sum_probs=67.8

Q ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCcchHH---HHHHHHHHHhhc----c-------hHHHHHHHHHHHhhhhcCChhhH
Q 036703           60 IKFKLRYNEVQRARHIFERLVQCHPYNLSA---WINFADFEMKMG----E-------VDRARNVYECAVEIFLADDHDEA  125 (365)
Q Consensus        60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~~~~~~~~~----~-------~~~A~~~~~~a~~~~~~~~~~~~  125 (365)
                      +.-+...||+-+|+++.+..+..++++...   ...-|.++....    +       .-.+.++|.++... .|..    
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp~~----   77 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SPDS----   77 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-ChhH----
Confidence            456778999999999999999999887744   344455555433    2       23577888888888 6665    


Q ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703          126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      ...++.+|+-+.   ....|+++..--++++..
T Consensus        78 A~~L~~la~~l~---s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   78 AHSLFELASQLG---SVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHHHHhh---hHHHHHHHHHHHHHHhcc
Confidence            778888887766   667788888888888764

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.90  E-value=0.54  Score=36.81  Aligned_cols=99  Identities=19%  Similarity=0.237  Sum_probs=71.5

Q ss_pred             ccchhHHHHHHHHHHhcc-----CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC--C----HHH
Q 036703          141 NCKETDRARCIYKFALDR-----IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM--N----YDT  209 (365)
Q Consensus       141 ~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~--~----~~~  209 (365)
                      ....+++|++.|.-|+-.     .+....+.+++..+-++...|+ ...+...+.+|...|++++.....  .    ..+
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~-~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD-EENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            334567777777766532     2222346777888888877776 345556677899999999975432  2    467


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          210 WFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       210 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      .+.+|.+..+.|++++|...|.+++..-..+
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            8889999999999999999999999874443

>PRK10941 hypothetical protein; Provisional

Probab=95.89  E-value=0.17  Score=41.03  Aligned_cols=64  Identities=14%  Similarity=0.000  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      ..+-..+.+.++++.|..+.++++...|+++.-+...|.++.+.|.+..|..-++..++. .|++
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~-~P~d  248 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ-CPED  248 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-CCCc
Confidence            344566778899999999999999999999999999999999999999999999999999 9987

>PF13041 PPR_2: PPR repeat family

Probab=95.86  E-value=0.061  Score=30.74  Aligned_cols=31  Identities=10%  Similarity=0.156  Sum_probs=17.5

Q ss_pred             chHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           86 NLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      |...|..+...+.+.|++++|.++|+++.+.
T Consensus         2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            3445555555555555555555555555554

>PF13041 PPR_2: PPR repeat family

Probab=95.68  E-value=0.073  Score=30.41  Aligned_cols=41  Identities=20%  Similarity=0.193  Sum_probs=21.7

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhh--CCChHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHW--MPDHEGWLSYI   60 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~   60 (365)
                      ...|..+...+.+.|++++|.++|+++.+.  .|+..++..+.
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li   45 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI   45 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            445555556666666666666666665542  34444444443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.68  E-value=0.1  Score=40.82  Aligned_cols=96  Identities=16%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             ccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHHHhCCCc-------cHHHHHHHHHhhC--cc----hHHH
Q 036703          263 DAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMELCLGNID-------PCRKLYEKYLEWS--PE----NCYA  327 (365)
Q Consensus       263 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~A~~~~~~al~~~--p~----~~~~  327 (365)
                      ....+++|+..|.-|+-.......- |.  ..++..++.++...|+.+       .|...|+++++..  |.    ...+
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~-~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEK-PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            3456778888888776552111100 22  677888899998888844       5556666665543  21    3467


Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHhcCcCCCC
Q 036703          328 WSKYTELEKSLDETERARAIFELAIAQPILDL  359 (365)
Q Consensus       328 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~  359 (365)
                      ...+|.+..+.|+.++|...|.+++.......
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            78899999999999999999999998765433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.53  E-value=0.49  Score=34.68  Aligned_cols=83  Identities=14%  Similarity=0.033  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK   99 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~   99 (365)
                      ...+....+-...++.+.+..++.-+--+.|. ..+-..-+.++...|++.+|+.+|+.+....|..+..--.++.++..
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            44667777778889999999999988889999 56666777888899999999999999988888777777777777766


Q ss_pred             hcch
Q 036703          100 MGEV  103 (365)
Q Consensus       100 ~~~~  103 (365)
                      .|+.
T Consensus        91 ~~D~   94 (160)
T PF09613_consen   91 LGDP   94 (160)
T ss_pred             cCCh
Confidence            6653

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.41  E-value=1.3  Score=36.78  Aligned_cols=186  Identities=12%  Similarity=-0.053  Sum_probs=116.3

Q ss_pred             ccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH-HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 036703          141 NCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK-QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER  219 (365)
Q Consensus       141 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~  219 (365)
                      ..+++..+...+..+-.....    .....++..+. ..|....     ..+|...|+.+.  ...++...+.++.++..
T Consensus        53 ~~~~~~~a~~~~~~a~~~~~~----~a~~~l~~~y~~g~gv~~~-----~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~  121 (292)
T COG0790          53 YPPDYAKALKSYEKAAELGDA----AALALLGQMYGAGKGVSRD-----KTKAADWYRCAA--ADGLAEALFNLGLMYAN  121 (292)
T ss_pred             ccccHHHHHHHHHHhhhcCCh----HHHHHHHHHHHhccCcccc-----HHHHHHHHHHHh--hcccHHHHHhHHHHHhc
Confidence            456778888888877652211    12222222222 2222221     346888888444  45677888889998876


Q ss_pred             ----hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc------cCChhHHHHHHHHHHhccccCCCcch
Q 036703          220 ----VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD------AGDLERTRDVYRTLFIFYFSFSPRME  289 (365)
Q Consensus       220 ----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~a~~~~~~a~~~~~~~~~~~~  289 (365)
                          ..+..+|...|+++........        ......++.++...      ..+...|...|.++-...        
T Consensus       122 G~gv~~d~~~A~~~~~~Aa~~g~~~a--------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--------  185 (292)
T COG0790         122 GRGVPLDLVKALKYYEKAAKLGNVEA--------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--------  185 (292)
T ss_pred             CCCcccCHHHHHHHHHHHHHcCChhH--------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--------
Confidence                3489999999999988744331        01233444444211      113347888888887763        


Q ss_pred             hHHHHHHHHHHHHH----hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhcc---------------chhHHHHHHHH
Q 036703          290 ERRIFKKYIEMELC----LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLD---------------ETERARAIFEL  350 (365)
Q Consensus       290 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---------------~~~~A~~~~~~  350 (365)
                      .+.....++.+|..    ..++.+|..+|.++-+...  ...+..++ ++...|               +...|...+..
T Consensus       186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~  262 (292)
T COG0790         186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQK  262 (292)
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHH
Confidence            24445566666643    3478999999999998875  66777777 555444               77788888888


Q ss_pred             HhcCcC
Q 036703          351 AIAQPI  356 (365)
Q Consensus       351 a~~~~~  356 (365)
                      +....+
T Consensus       263 ~~~~~~  268 (292)
T COG0790         263 ACELGF  268 (292)
T ss_pred             HHHcCC
Confidence            776655

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=95.29  E-value=0.45  Score=36.28  Aligned_cols=82  Identities=13%  Similarity=0.090  Sum_probs=60.9

Q ss_pred             HHHhccHHHHHHHHHHHHHh-CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc
Q 036703           63 KLRYNEVQRARHIFERLVQC-HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN  141 (365)
Q Consensus        63 ~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (365)
                      .+..-.-+.|...|-++-.. .-+++++...+|.+|. ..+.++++.++.++++. .+.++.-++.++..++.++.   +
T Consensus       116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l-~~~~~~~n~eil~sLas~~~---~  190 (203)
T PF11207_consen  116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALEL-SNPDDNFNPEILKSLASIYQ---K  190 (203)
T ss_pred             HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHH---H
Confidence            33442335666666554332 2257899999999988 56789999999999998 66543455899999999999   9


Q ss_pred             cchhHHHH
Q 036703          142 CKETDRAR  149 (365)
Q Consensus       142 ~~~~~~A~  149 (365)
                      +|+++.|-
T Consensus       191 ~~~~e~AY  198 (203)
T PF11207_consen  191 LKNYEQAY  198 (203)
T ss_pred             hcchhhhh
Confidence            99988874

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.16  E-value=2.5  Score=38.72  Aligned_cols=253  Identities=12%  Similarity=-0.013  Sum_probs=131.1

Q ss_pred             ChhhHHHHHHHHHHh-----CCCchHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhhCCChHHHHHHHHHHHHh---c
Q 036703            1 FIDHGRNAWDRVVTL-----SPRVDQLWNNYIRMEENLG-----NVAGARQIFERWMHWMPDHEGWLSYIKFKLRY---N   67 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~   67 (365)
                      |++.|+..|+.+...     .-..+.+...+|.+|.+..     +...|..+|.++-.... +..-..++.++...   .
T Consensus       264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~  342 (552)
T KOG1550|consen  264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKER  342 (552)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccc
Confidence            456777777777651     1113446777788877743     55668888888766433 23334455554433   3


Q ss_pred             cHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh----cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703           68 EVQRARHIFERLVQCHPYNLSAWINFADFEMKM----GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK  143 (365)
Q Consensus        68 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (365)
                      |+..|...|..|....  +..+.+.++.++..-    .+...|...|.++.+. .+      +.+...++.++..  ..+
T Consensus       343 d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~-g~------~~A~~~~~~~~~~--g~~  411 (552)
T KOG1550|consen  343 DYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEK-GN------PSAAYLLGAFYEY--GVG  411 (552)
T ss_pred             cHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc-cC------hhhHHHHHHHHHH--ccc
Confidence            5678888888776554  456666667666642    3677888888888877 42      3333444444431  125


Q ss_pred             hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---
Q 036703          144 ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV---  220 (365)
Q Consensus       144 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~---  220 (365)
                      .++.+.-.+......--........................  .....+...+.++..  ..+..+...+++.+...   
T Consensus       412 ~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~  487 (552)
T KOG1550|consen  412 RYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVI--STLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGT  487 (552)
T ss_pred             cccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccc--cchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCC
Confidence            55544444433322111110000111000000000000000  011234444444433  35667777777776543   


Q ss_pred             -CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC--hhHHHHHHHHHHhcc
Q 036703          221 -GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD--LERTRDVYRTLFIFY  281 (365)
Q Consensus       221 -~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~a~~~~  281 (365)
                       .+++.|...|.++.... ..           ...+.+.++|...|-  ...|..++.++....
T Consensus       488 ~~d~~~a~~~y~~a~~~~-~~-----------~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~  539 (552)
T KOG1550|consen  488 GRDPEKAAAQYARASEQG-AQ-----------ALFNLGYMHEHGEGIKVLHLAKRYYDQASEED  539 (552)
T ss_pred             CCChHHHHHHHHHHHHhh-hH-----------HHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence             36888888888887766 21           233344444433332  366666676666643

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.99  E-value=0.3  Score=28.28  Aligned_cols=29  Identities=21%  Similarity=0.280  Sum_probs=12.9

Q ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCcchH
Q 036703           60 IKFKLRYNEVQRARHIFERLVQCHPYNLS   88 (365)
Q Consensus        60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~   88 (365)
                      +-.+.+.|++++|+...+.+++..|++..
T Consensus         8 Aig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    8 AIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            33344445555555555555555554443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.97  E-value=0.62  Score=32.85  Aligned_cols=80  Identities=13%  Similarity=0.037  Sum_probs=54.2

Q ss_pred             chHHHHHHHHHHHhhc---chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703           86 NLSAWINFADFEMKMG---EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      +....+.++-.+.+..   +..+.+.+++..++...|..   .....+.++--+.   +.++|++++.+.+..++..|++
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~---rRe~lyYLAvg~y---RlkeY~~s~~yvd~ll~~e~~n  104 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER---RRECLYYLAVGHY---RLKEYSKSLRYVDALLETEPNN  104 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc---chhhhhhhHHHHH---HHhhHHHHHHHHHHHHhhCCCc
Confidence            5666677777776654   45677888888886304432   3445555666677   8899999999999999988887


Q ss_pred             hhHHHHHHH
Q 036703          163 RAEDLYRKF  171 (365)
Q Consensus       163 ~~~~~~~~~  171 (365)
                      ..+......
T Consensus       105 ~Qa~~Lk~~  113 (149)
T KOG3364|consen  105 RQALELKET  113 (149)
T ss_pred             HHHHHHHHH
Confidence            644443333

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.97  E-value=2  Score=37.98  Aligned_cols=19  Identities=26%  Similarity=0.069  Sum_probs=11.9

Q ss_pred             HHHHHHHHHhcCChhHHHH
Q 036703           23 WNNYIRMEENLGNVAGARQ   41 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~   41 (365)
                      ....+.++.++|.++.|.+
T Consensus       298 ~~~i~~fL~~~G~~e~AL~  316 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQ  316 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHh
Confidence            5566677777776666655

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.90  E-value=2.9  Score=38.00  Aligned_cols=54  Identities=9%  Similarity=0.150  Sum_probs=38.7

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703          214 IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF  280 (365)
Q Consensus       214 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  280 (365)
                      .++....++|.+|..+-++--+..|+            +++-+++|+ ....++++|.+.|-+|=+.
T Consensus       780 VqlHve~~~W~eAFalAe~hPe~~~d------------Vy~pyaqwL-AE~DrFeEAqkAfhkAGr~  833 (1081)
T KOG1538|consen  780 VQLHVETQRWDEAFALAEKHPEFKDD------------VYMPYAQWL-AENDRFEEAQKAFHKAGRQ  833 (1081)
T ss_pred             hhheeecccchHhHhhhhhCcccccc------------ccchHHHHh-hhhhhHHHHHHHHHHhcch
Confidence            34456678999998887775444444            777888887 4778888888888776443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.84  E-value=1  Score=34.46  Aligned_cols=71  Identities=13%  Similarity=0.092  Sum_probs=55.8

Q ss_pred             ChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc----chHHHHHHHHHHHhhcchHHHH
Q 036703           35 NVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY----NLSAWINFADFEMKMGEVDRAR  107 (365)
Q Consensus        35 ~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~A~  107 (365)
                      +-+.|++.|-++- -.|.   +.+...+|.+|. ..|.++++.++.++++..+.    +++++..++.++.+.|+++.|-
T Consensus       121 ~d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3467887776553 3344   677788888887 55789999999999997543    5899999999999999998873

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=94.78  E-value=1.7  Score=36.01  Aligned_cols=158  Identities=15%  Similarity=-0.012  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------------------------CCHHHHHHHHHHHHhcCCCch
Q 036703          188 IAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV--------------------------GNQERVREVYERAIANVPPAE  241 (365)
Q Consensus       188 ~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~--------------------------~~~~~A~~~~~~~~~~~p~~~  241 (365)
                      +-.+++.+=.-...+.|..+++.-..+.+....                          +-.+++..++.+++......+
T Consensus       211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGP  290 (415)
T COG4941         211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGP  290 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCCh
Confidence            344677776777788999988876666554332                          124566777777776643322


Q ss_pred             hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh-
Q 036703          242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW-  320 (365)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-  320 (365)
                        .....-+  .-..+.......-+......+|.-.....       |+|.+-.+-+....+......+....+..... 
T Consensus       291 --YqlqAAI--aa~HA~a~~aedtDW~~I~aLYdaL~~~a-------pSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~  359 (415)
T COG4941         291 --YQLQAAI--AALHARARRAEDTDWPAIDALYDALEQAA-------PSPVVTLNRAVALAMREGPAAGLAMVEALLARP  359 (415)
T ss_pred             --HHHHHHH--HHHHHhhcccCCCChHHHHHHHHHHHHhC-------CCCeEeehHHHHHHHhhhHHhHHHHHHHhhccc
Confidence              1101001  11111111012345666667777776666       44444344444444444566667776666544 


Q ss_pred             -CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          321 -SPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       321 -~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                       -......+...+.++.+.|..++|+..|++++.+.+
T Consensus       360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~  396 (415)
T COG4941         360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALAR  396 (415)
T ss_pred             ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcC
Confidence             223556777888999999999999999999988876

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=94.70  E-value=1.2  Score=38.82  Aligned_cols=123  Identities=11%  Similarity=-0.062  Sum_probs=82.0

Q ss_pred             hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHH
Q 036703           32 NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVY  110 (365)
Q Consensus        32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~  110 (365)
                      ..|++..|-+-...+++..|. +..-...+.+....|+|+.+...+.-+-..-.....+...+..-....|++++|...-
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a  380 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA  380 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence            457777777777777777776 5555566677777888888887776555444433444444445556677788777777


Q ss_pred             HHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703          111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      +-++.. .-.+    +++...-+....   ..|-++++....++.+...|..
T Consensus       381 ~~~l~~-eie~----~ei~~iaa~sa~---~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        381 EMMLSN-EIED----EEVLTVAAGSAD---ALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHhcc-ccCC----hhheeeecccHH---HHhHHHHHHHHHHHHhccCChh
Confidence            666655 3222    555555555555   6788899999999998887764

>PF12854 PPR_1: PPR repeat

Probab=94.62  E-value=0.084  Score=27.27  Aligned_cols=18  Identities=28%  Similarity=0.159  Sum_probs=6.5

Q ss_pred             HHHHHHHHhcCChhHHHH
Q 036703           24 NNYIRMEENLGNVAGARQ   41 (365)
Q Consensus        24 ~~~~~~~~~~g~~~~A~~   41 (365)
                      ..+...+.+.|++++|.+
T Consensus        11 ~~lI~~~Ck~G~~~~A~~   28 (34)
T PF12854_consen   11 NTLIDGYCKAGRVDEAFE   28 (34)
T ss_pred             HHHHHHHHHCCCHHHHHH
Confidence            333333333333333333

>PF12854 PPR_1: PPR repeat

Probab=94.45  E-value=0.086  Score=27.21  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=15.1

Q ss_pred             chHHHHHHHHHHHhhcchHHHHHHHHH
Q 036703           86 NLSAWINFADFEMKMGEVDRARNVYEC  112 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~  112 (365)
                      |..+|..+...+.+.|+.++|.++|++
T Consensus         6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    6 DVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            455555555555555555555555554

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.44  E-value=1.1  Score=30.91  Aligned_cols=89  Identities=11%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             HhccHHHHHHHHHHHHHhCCc------------chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHHHH
Q 036703           65 RYNEVQRARHIFERLVQCHPY------------NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQLF  129 (365)
Q Consensus        65 ~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~  129 (365)
                      .-|-+++|..-+++++....+            +.-.+-.++..+...|++++++..-++++.. +...   +.+....|
T Consensus        21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y-FNRRGEL~qdeGklW   99 (144)
T PF12968_consen   21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY-FNRRGELHQDEGKLW   99 (144)
T ss_dssp             HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHH--TTSTHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HhhccccccccchhH
Confidence            446677777778777764322            3445666777788889998888887777765 3211   23335666


Q ss_pred             H----HHHHHHHhccccchhHHHHHHHHHHhc
Q 036703          130 V----AFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus       130 ~----~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      +    ..+..+.   ..|+.++|+..|+.+-+
T Consensus       100 IaaVfsra~Al~---~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen  100 IAAVFSRAVALE---GLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHH---HTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---hcCChHHHHHHHHHHHH
Confidence            5    4556667   88999999999998754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.42  E-value=3.5  Score=36.86  Aligned_cols=161  Identities=15%  Similarity=0.100  Sum_probs=100.0

Q ss_pred             hccHHHHHHHHHHHHH------------hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhh----------------
Q 036703           66 YNEVQRARHIFERLVQ------------CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF----------------  117 (365)
Q Consensus        66 ~~~~~~A~~~~~~~l~------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------  117 (365)
                      .+.|++|...|.-++.            ..|.+....+.++.+...+|+.+.|..+.++++=..                
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            3467888888887766            356677889999999999999999888888877541                


Q ss_pred             hcCChhhHHHHH---HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHH-HHcCCchhhhHHHHHHHH
Q 036703          118 LADDHDEAEQLF---VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE-KQYGDREGIEDAIAGKMR  193 (365)
Q Consensus       118 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~  193 (365)
                      .|-.++.....+   ..+.....   +.|-+..|.++.+-.++..|..+ +.....+++++ .+..++.-        -+
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~---~RGC~rTA~E~cKlllsLdp~eD-Pl~~l~~ID~~ALrareYqw--------iI  398 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLA---QRGCWRTALEWCKLLLSLDPSED-PLGILYLIDIYALRAREYQW--------II  398 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHH---hcCChHHHHHHHHHHhhcCCcCC-chhHHHHHHHHHHHHHhHHH--------HH
Confidence            010012223333   34445556   88999999999999999999843 22222233332 22223221        22


Q ss_pred             HHHHHH-----HHcCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCC
Q 036703          194 LQYEDG-----VRKNPMNYDTWFDYIRLEERVGN---QERVREVYERAIANVPP  239 (365)
Q Consensus       194 ~~~~~~-----l~~~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~p~  239 (365)
                      ..++..     +...|+- .--..++.++.....   -..|...+.+|++..|.
T Consensus       399 ~~~~~~e~~n~l~~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  399 ELSNEPENMNKLSQLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             HHHHHHHhhccHhhcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            222222     2334443 222345555555444   67799999999999886

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.39  E-value=0.35  Score=39.22  Aligned_cols=62  Identities=15%  Similarity=0.235  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      +...++..+...|+++.+...+++.+..+|.+...|..+...|...|+...|+..|+++-+.
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            44556677778899999999999999999999999999999999999999999999988764

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.32  E-value=0.96  Score=32.62  Aligned_cols=64  Identities=13%  Similarity=0.100  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703           56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD  120 (365)
Q Consensus        56 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  120 (365)
                      ....+..-...++++.+..++..+--..|+.+.+-+.-+-+++..|++.+|+.++.+..+. .+.
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-~~~   76 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS-AGA   76 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-CCC
Confidence            3444444556788899999998888899988888888888999999999999999988877 544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.23  E-value=0.49  Score=38.43  Aligned_cols=62  Identities=16%  Similarity=0.157  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703          292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA  353 (365)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  353 (365)
                      .++..++..+...|+++.+.+.+++.+..+|-+-.+|..+...+...|+...|+..|+++-+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            34566777777888899999999999999999999999999999999999999888887765

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.17  E-value=3.9  Score=36.31  Aligned_cols=249  Identities=13%  Similarity=0.121  Sum_probs=129.4

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      .+.........|+++......+..+...|+.+.|+..++..+.  +.     .-.....+-.+.-+.++.+|-..+....
T Consensus       253 ~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~  330 (546)
T KOG3783|consen  253 EKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR  330 (546)
T ss_pred             HHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3445555667888888888889999999998889999988887  43     2233344555555668888888888888


Q ss_pred             HhCCcchHHHHHHHH-HHH-------h-hcchHHHHHHHHHHHhhh--hcCChhhHHHHHHHHHHHHHhccccchhHHHH
Q 036703           81 QCHPYNLSAWINFAD-FEM-------K-MGEVDRARNVYECAVEIF--LADDHDEAEQLFVAFAKFEEMGCNCKETDRAR  149 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~-~~~-------~-~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  149 (365)
                      ..+.-+...+..++- ++.       . .|+.++|..+++......  .|.+-|.....                ..+|.
T Consensus       331 desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~----------------~RKve  394 (546)
T KOG3783|consen  331 DESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI----------------VRKVE  394 (546)
T ss_pred             hhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH----------------HHHHH
Confidence            877766655555552 221       1 234444444444333320  11110000111                11111


Q ss_pred             HHHHHHhccCCCchhHHHHHHHHHHHHHcCC--chhhhHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHhCCHHHH
Q 036703          150 CIYKFALDRIPKGRAEDLYRKFLAFEKQYGD--REGIEDAIAGKMRLQYEDGVRKNPMNYD-TWFDYIRLEERVGNQERV  226 (365)
Q Consensus       150 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~A  226 (365)
                      +.-.+.- ..+......-+..++.++.....  ..+.     .+....++.--..++++.- -.+.+|.++...|+...|
T Consensus       395 rf~~~~~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l-----~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a  468 (546)
T KOG3783|consen  395 RFVKRGP-LNASILLASPYYELAYFWNGFSRMSKNEL-----EKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVA  468 (546)
T ss_pred             HHhcccc-ccccccccchHHHHHHHHhhcccCChhhH-----HHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHH
Confidence            1111110 00110001112223333322221  1111     1122222111111222222 346678888999999999


Q ss_pred             HHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC-hhHHHHHHHHHHhcc
Q 036703          227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD-LERTRDVYRTLFIFY  281 (365)
Q Consensus       227 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~a~~~~  281 (365)
                      ..+|..+++....... ..|- +....+.+|.++. ..+. ..+++.++.+|-...
T Consensus       469 ~~~f~i~~~~e~~~~~-d~w~-~PfA~YElA~l~~-~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  469 PKCFKIQVEKESKRTE-DLWA-VPFALYELALLYW-DLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             HHHHHHHHHHHHhhcc-cccc-ccHHHHHHHHHHH-hcccChHHHHHHHHHHHhhc
Confidence            9999998854111000 0010 1346667777773 5555 899999999988764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.13  E-value=5.4  Score=37.80  Aligned_cols=250  Identities=12%  Similarity=0.009  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--c---h----HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh-
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPY--N---L----SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD-  123 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~---~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-  123 (365)
                      ..-+..+-......++.+|..++.++-..-|.  .   .    ..--..+.+....|+++.|.++.+.++.. .|.+.. 
T Consensus       416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~-L~~~~~~  494 (894)
T COG2909         416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ-LPEAAYR  494 (894)
T ss_pred             hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cccccch
Confidence            33444555556778889999998887765442  1   1    22223355666789999999999999999 776511 


Q ss_pred             hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc--hhHHHHHHH--HHHHHHcCCchhhhHHHHHHHHHHHHHH
Q 036703          124 EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG--RAEDLYRKF--LAFEKQYGDREGIEDAIAGKMRLQYEDG  199 (365)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~  199 (365)
                      ....+....+....   -.|++++|+.+..++.+.....  ....+|..+  ..+....|.....+.  ...-..++.+-
T Consensus       495 ~r~~~~sv~~~a~~---~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~--~~~~~~~~~q~  569 (894)
T COG2909         495 SRIVALSVLGEAAH---IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ--EKAFNLIREQH  569 (894)
T ss_pred             hhhhhhhhhhHHHH---HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHH
Confidence            12345566777777   8999999999999887753222  134455555  334455662221110  01112233444


Q ss_pred             HHcCCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHH
Q 036703          200 VRKNPMNYDTWFDYIRLEERV----GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR  275 (365)
Q Consensus       200 l~~~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  275 (365)
                      +...|.+.-.....+.++...    +...+++.-++-.....|.....      ....+.++.++ ...|+.++|...+.
T Consensus       570 l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~------~~~~~~LA~l~-~~~Gdl~~A~~~l~  642 (894)
T COG2909         570 LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLS------RLALSMLAELE-FLRGDLDKALAQLD  642 (894)
T ss_pred             hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHH------HHHHHHHHHHH-HhcCCHHHHHHHHH
Confidence            455555544444444443222    33334444444443444443221      11224567775 68999999999998


Q ss_pred             HHHhccccCC--CcchhHHHHHHHHHHHHHhCCCccHHHHHHHH
Q 036703          276 TLFIFYFSFS--PRMEERRIFKKYIEMELCLGNIDPCRKLYEKY  317 (365)
Q Consensus       276 ~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  317 (365)
                      ..........  ..|+ ......-..+-...|+...|.....+.
T Consensus       643 ~~~~l~~~~~~~~~~~-a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         643 ELERLLLNGQYHVDYL-AAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHHHHhcCCCCCchHH-HHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            8877632211  1110 111111111122568888888777763

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.85  E-value=0.18  Score=27.21  Aligned_cols=27  Identities=19%  Similarity=0.195  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 036703           22 LWNNYIRMEENLGNVAGARQIFERWMH   48 (365)
Q Consensus        22 ~~~~~~~~~~~~g~~~~A~~~~~~al~   48 (365)
                      ++..+|.++...|++++|..++++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            455566666666666666666666654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.75  E-value=0.19  Score=27.08  Aligned_cols=29  Identities=34%  Similarity=0.320  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           88 SAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      .++..+|.++...|++++|+.++++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46778889999999999999999998876

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=93.49  E-value=0.32  Score=39.15  Aligned_cols=59  Identities=15%  Similarity=0.054  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703          294 FKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       294 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                      +...+..|...|.+.+|..+.++++..+|=+...|..+.+.+...||.-.+.+.|++.-
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            34455667789999999999999999999999999999999999999888877777653

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.16  E-value=3.5  Score=37.00  Aligned_cols=113  Identities=13%  Similarity=-0.070  Sum_probs=78.4

Q ss_pred             HHHHHHHhCCCchHHHHHH--HHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHH-HHHHHhC
Q 036703            8 AWDRVVTLSPRVDQLWNNY--IRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIF-ERLVQCH   83 (365)
Q Consensus         8 ~~~~~l~~~p~~~~~~~~~--~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~-~~~l~~~   83 (365)
                      .+...+..+|.++.+....  .-.+...+....+.-.+..++..+|+ ......++......|....+...+ +.+....
T Consensus        53 a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~  132 (620)
T COG3914          53 ALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLS  132 (620)
T ss_pred             HHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence            3344445567777664443  55566678877888888888998888 567777776655555555544444 4477788


Q ss_pred             CcchHHHHHH------HHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           84 PYNLSAWINF------ADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        84 p~~~~~~~~~------~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      |++.......      +++....|+..++....+++... .|..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~-~p~~  175 (620)
T COG3914         133 PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDL-LPKY  175 (620)
T ss_pred             cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-hhhh
Confidence            8776665555      77777778888888888888888 7765

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.16  E-value=0.76  Score=30.53  Aligned_cols=53  Identities=21%  Similarity=0.299  Sum_probs=35.7

Q ss_pred             HHhccHHHHHHHHHHHHHhCCc---------chHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           64 LRYNEVQRARHIFERLVQCHPY---------NLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        64 ~~~~~~~~A~~~~~~~l~~~p~---------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      .+.||+..|.+.+.+.+.....         -......++.+....|++++|...++++++.
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3556677776666665543221         1244566778888888888888888888887

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=93.03  E-value=4.5  Score=33.54  Aligned_cols=104  Identities=12%  Similarity=0.077  Sum_probs=63.8

Q ss_pred             HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC-------------------hhh
Q 036703           64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD-------------------HDE  124 (365)
Q Consensus        64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------------------~~~  124 (365)
                      .+..+..+-++.-..+++++|....++..++.-..  ....+|.++++++++. ....                   .+.
T Consensus       195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka-~e~~yr~sqq~qh~~~~~da~~rRDt  271 (556)
T KOG3807|consen  195 WRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKA-GETIYRQSQQCQHQSPQHEAQLRRDT  271 (556)
T ss_pred             HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHH-HHHHHhhHHHHhhhccchhhhhhccc
Confidence            34445555566666778888877777777665333  3456777777777765 1110                   001


Q ss_pred             HHHHH--HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 036703          125 AEQLF--VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA  173 (365)
Q Consensus       125 ~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  173 (365)
                      ...++  ..++.+..   ++|+..+|.+.++...+..|-.....+...+++
T Consensus       272 nvl~YIKRRLAMCAR---klGrlrEA~K~~RDL~ke~pl~t~lniheNLiE  319 (556)
T KOG3807|consen  272 NVLVYIKRRLAMCAR---KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLE  319 (556)
T ss_pred             chhhHHHHHHHHHHH---HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHH
Confidence            11222  34566777   899999999999999888775433334444433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=93.03  E-value=0.66  Score=40.74  Aligned_cols=86  Identities=13%  Similarity=0.020  Sum_probs=49.5

Q ss_pred             CChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHH
Q 036703           34 GNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRY---NEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNV  109 (365)
Q Consensus        34 g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~  109 (365)
                      +....|+..|.+++...|. ...+...+.++.+.   |+.-.|+.-.-.++..+|....+|..++.++...+++.+|+.+
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~  467 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence            3445566666666666666 44445555554443   3444455555556666666666666666666666666666666


Q ss_pred             HHHHHhhhhcC
Q 036703          110 YECAVEIFLAD  120 (365)
Q Consensus       110 ~~~a~~~~~~~  120 (365)
                      ...+... +|.
T Consensus       468 ~~alq~~-~Pt  477 (758)
T KOG1310|consen  468 HWALQMS-FPT  477 (758)
T ss_pred             HHHHhhc-Cch
Confidence            6655555 554

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.99  E-value=0.84  Score=41.10  Aligned_cols=100  Identities=13%  Similarity=0.067  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHH
Q 036703          252 LWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSK  330 (365)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  330 (365)
                      +|...+..  ++.++|..+.+.|...+...+.+..- .+ ......+.-+|.+..+.++|.++++.|-+.+|.++---..
T Consensus       357 LWn~A~~~--F~~~~Y~~s~~~y~~Sl~~i~~D~~~-~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  357 LWNTAKKL--FKMEKYVVSIRFYKLSLKDIISDNYS-DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHhhHHH--HHHHHHHHHHHHHHHHHHhccchhhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            56666655  37789999999999999876443211 11 5677888889999999999999999999999999887777


Q ss_pred             HHHHHhhccchhHHHHHHHHHhcC
Q 036703          331 YTELEKSLDETERARAIFELAIAQ  354 (365)
Q Consensus       331 ~~~~~~~~g~~~~A~~~~~~a~~~  354 (365)
                      ........|+-++|..+.......
T Consensus       434 ~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  434 MLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhh
Confidence            777777889999998887766544

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.96  E-value=1.6  Score=39.49  Aligned_cols=95  Identities=6%  Similarity=0.031  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHH
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF   93 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~   93 (365)
                      .+|.. |.-..+..++..+++.|+..+..-|.       ......++.+|....+.++|.++++.|-+.+|.++-.-...
T Consensus       356 iLWn~-A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  356 LLWNT-AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHh-hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            34544 33445567799999999999987776       34566778889999999999999999999999998888888


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhh
Q 036703           94 ADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        94 ~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      .......|..++|+.+.......
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhh
Confidence            88888889999999998887766

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.89  E-value=0.19  Score=23.96  Aligned_cols=23  Identities=13%  Similarity=0.075  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHH
Q 036703           22 LWNNYIRMEENLGNVAGARQIFE   44 (365)
Q Consensus        22 ~~~~~~~~~~~~g~~~~A~~~~~   44 (365)
                      +...+|..+...|++++|+..++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45566666666666666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.76  E-value=2.5  Score=29.93  Aligned_cols=69  Identities=19%  Similarity=0.141  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhcC---ChhHHHHHHHHHHh-hCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH
Q 036703           21 QLWNNYIRMEENLG---NVAGARQIFERWMH-WMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA   89 (365)
Q Consensus        21 ~~~~~~~~~~~~~g---~~~~A~~~~~~al~-~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   89 (365)
                      ...+.++..+....   +..+.+.+++..++ -+|+  ....+.++--+.+.++|+.++.+.+..++..|++.++
T Consensus        33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            33444444444433   23345555555554 3444  2233333444455555666666666555555555443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.47  E-value=7.3  Score=34.53  Aligned_cols=55  Identities=13%  Similarity=0.195  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703          166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN  236 (365)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  236 (365)
                      ..|..++......|+.+        .|..+|+++-        -+..+.-++...|+.+.-.++...+...
T Consensus       348 ~~W~~Lg~~AL~~g~~~--------lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  348 EKWKQLGDEALRQGNIE--------LAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHHHHHHHHHHTTBHH--------HHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHH--------HHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            45555555555555533        3444444321        1233344445556655555555554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.28  E-value=0.38  Score=25.54  Aligned_cols=29  Identities=10%  Similarity=0.105  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHW   49 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~   49 (365)
                      +++..+|.+....+++++|..-|++++++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34566666666666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=92.25  E-value=2.8  Score=41.31  Aligned_cols=146  Identities=18%  Similarity=0.182  Sum_probs=101.2

Q ss_pred             HHHHHHHHH-HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh-------CCC--hHHHHHHHHHHHHhccHHHHHH
Q 036703            5 GRNAWDRVV-TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW-------MPD--HEGWLSYIKFKLRYNEVQRARH   74 (365)
Q Consensus         5 A~~~~~~~l-~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------~p~--~~~~~~~~~~~~~~~~~~~A~~   74 (365)
                      +..++.+.. ..+|.....+..++.++...|+.++|+..-.++.-+       ++.  ...+..++.++...++...|..
T Consensus       957 slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~ 1036 (1236)
T KOG1839|consen  957 SLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALK 1036 (1236)
T ss_pred             hhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhh
Confidence            334666444 348888999999999999999999999877666532       222  3456667777777888888999


Q ss_pred             HHHHHHHh--------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC----hhhHHHHHHHHHHHHHhcccc
Q 036703           75 IFERLVQC--------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD----HDEAEQLFVAFAKFEEMGCNC  142 (365)
Q Consensus        75 ~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  142 (365)
                      .+.++...        .|....+...+..++...++++.|.++.+.|+.. .-.-    .-.....+..+++...   ..
T Consensus      1037 ~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~-~~~v~g~~~l~~~~~~~~~a~l~~---s~ 1112 (1236)
T KOG1839|consen 1037 SLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK-NKKVLGPKELETALSYHALARLFE---SM 1112 (1236)
T ss_pred             hHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH-HhhhcCccchhhhhHHHHHHHHHh---hh
Confidence            88888762        5655667788888888889999999999999876 3211    1222344445555555   55


Q ss_pred             chhHHHHHHHHH
Q 036703          143 KETDRARCIYKF  154 (365)
Q Consensus       143 ~~~~~A~~~~~~  154 (365)
                      +++..|....+.
T Consensus      1113 ~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1113 KDFRNALEHEKV 1124 (1236)
T ss_pred             HHHHHHHHHHhh
Confidence            555555554443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=92.19  E-value=1.1  Score=39.01  Aligned_cols=116  Identities=8%  Similarity=-0.063  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 036703            5 GRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCH   83 (365)
Q Consensus         5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~   83 (365)
                      |-.-...+++..|..+..-...+.+....|+++.+.+.+..+-..-.+ ..+...+..-....|+.+.|...-.-++...
T Consensus       308 as~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~e  387 (831)
T PRK15180        308 ASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNE  387 (831)
T ss_pred             HHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccc
Confidence            445556678888999999999999999999999999888766544333 4444455556667788999999888888877


Q ss_pred             CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      -.++++..-.+-.....|-++++...+++.+.. .|..
T Consensus       388 ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~-~~~~  424 (831)
T PRK15180        388 IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL-NPET  424 (831)
T ss_pred             cCChhheeeecccHHHHhHHHHHHHHHHHHhcc-CChh
Confidence            777777766666666788899999999999888 6654

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=92.17  E-value=1.5  Score=30.99  Aligned_cols=59  Identities=19%  Similarity=0.169  Sum_probs=42.2

Q ss_pred             HHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          297 YIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       297 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      ..+.....|+-++-.+++....+....++.+...++..|.+.|+..++.+++.+|.+..
T Consensus        92 ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   92 ALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            33445567777777777777775555589999999999999999999999999998754

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=92.01  E-value=2.9  Score=28.87  Aligned_cols=69  Identities=10%  Similarity=0.149  Sum_probs=41.2

Q ss_pred             HHHHHHHH--HHHhCCHHHHHHHHHHHHhc---CCCchh--hhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703          209 TWFDYIRL--EERVGNQERVREVYERAIAN---VPPAEE--KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF  280 (365)
Q Consensus       209 ~~~~~~~~--~~~~~~~~~A~~~~~~~~~~---~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  280 (365)
                      ++..+++.  ....|-+++|...+.+++..   .|....  ..-|..++..++.-+  + ...|++++++..-.+++..
T Consensus         9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A--~-~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen    9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGA--L-AGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHH--H-HHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHH--H-HhhccHHHHHHHHHHHHHH
Confidence            44555444  34568899999999998865   454321  122334444444433  3 3789999988888877765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.00  E-value=0.64  Score=30.89  Aligned_cols=61  Identities=8%  Similarity=0.114  Sum_probs=45.5

Q ss_pred             HHhhcchHHHHHHHHHHHhhhhcCChh-----hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703           97 EMKMGEVDRARNVYECAVEIFLADDHD-----EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus        97 ~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                      ..+.|++..|.+.+.+.... ......     ........++.++.   ..|++++|...++++++....
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~-~~~~~~~~~~~~~~~all~lA~~~~---~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDY-AKQSNNSSSNSGLAYALLNLAELHR---RFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHH-HhhcccchhhHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHH
Confidence            34678999998888888776 433211     22456777888899   999999999999999986443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.79  E-value=4  Score=36.63  Aligned_cols=133  Identities=11%  Similarity=-0.009  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHH--HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhH
Q 036703          192 MRLQYEDGVRKNPMNYDTWFDY--IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER  269 (365)
Q Consensus       192 a~~~~~~~l~~~p~~~~~~~~~--~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (365)
                      +...+...+..+|.++.+....  .-.+...++...+...+..++..+|.+..         ...+++...+...+....
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~L~~ale~~~~~~~~  120 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCP---------AVQNLAAALELDGLQFLA  120 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccch---------HHHHHHHHHHHhhhHHHH
Confidence            4455555566788888775554  44556678888888889999999988743         556666665543444444


Q ss_pred             HHHHHHHHHhccccCCCcc-hhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHH
Q 036703          270 TRDVYRTLFIFYFSFSPRM-EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTEL  334 (365)
Q Consensus       270 a~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  334 (365)
                      +...-+.+....|...... +.+..+. ++......|+..++....+++....|.++.+...+...
T Consensus       121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         121 LADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            5555555666654332221 1133333 67777788999999999999999998887665555443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.69  E-value=0.87  Score=23.84  Aligned_cols=21  Identities=10%  Similarity=-0.110  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHH
Q 036703           22 LWNNYIRMEENLGNVAGARQI   42 (365)
Q Consensus        22 ~~~~~~~~~~~~g~~~~A~~~   42 (365)
                      .|.++|-.+...|++++|+.+
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            455555555555556666555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.53  E-value=1  Score=23.56  Aligned_cols=30  Identities=10%  Similarity=-0.013  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHhccHHHHHHH--HHHHHHhCC
Q 036703           55 GWLSYIKFKLRYNEVQRARHI--FERLVQCHP   84 (365)
Q Consensus        55 ~~~~~~~~~~~~~~~~~A~~~--~~~~l~~~p   84 (365)
                      .|..+|-.+...|++++|+.+  |+-+...+|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            345555555555666666666  324444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.50  E-value=1.1  Score=36.16  Aligned_cols=59  Identities=15%  Similarity=0.134  Sum_probs=50.4

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           58 SYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        58 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      ..+..+...|.+.+|.++.++++..+|-+...|..+..++...|+--.|.+.|++.-+.
T Consensus       284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v  342 (361)
T COG3947         284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV  342 (361)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence            34567778899999999999999999999999999999999999988888888877655

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=91.27  E-value=3.6  Score=29.65  Aligned_cols=29  Identities=10%  Similarity=0.053  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhc
Q 036703            5 GRNAWDRVVTLSPRVDQLWNNYIRMEENL   33 (365)
Q Consensus         5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~   33 (365)
                      ....++.++..+|.++.....++.++...
T Consensus        26 l~~yLe~~~~~~~~~~~~~~~li~ly~~~   54 (140)
T smart00299       26 LIPYLESALKLNSENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence            34445555554444455555555555443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=91.07  E-value=1.1  Score=39.53  Aligned_cols=85  Identities=12%  Similarity=0.053  Sum_probs=74.6

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhc---CChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENL---GNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFER   78 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~---g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~   78 (365)
                      ..|+..|.+++...|.....+...+..+++.   |+.-.|+.-...+++++|. ..+|..++++....+.+.+|++....
T Consensus       391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a  470 (758)
T KOG1310|consen  391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA  470 (758)
T ss_pred             HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence            4678899999999999999999999888875   6777899999999999999 78999999999999999999999888


Q ss_pred             HHHhCCcch
Q 036703           79 LVQCHPYNL   87 (365)
Q Consensus        79 ~l~~~p~~~   87 (365)
                      +....|.+.
T Consensus       471 lq~~~Ptd~  479 (758)
T KOG1310|consen  471 LQMSFPTDV  479 (758)
T ss_pred             HhhcCchhh
Confidence            877888544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.06  E-value=4.6  Score=29.29  Aligned_cols=79  Identities=10%  Similarity=-0.046  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG  101 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  101 (365)
                      .+.....-...++++.+..++..+--+.|+ ..+-..-+.++...|++.+|..+|+......+..+..--.++.++.-.|
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            444555556688999999999888888898 4555556677888999999999999988877755544444444444444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.06  E-value=0.4  Score=22.86  Aligned_cols=22  Identities=18%  Similarity=0.293  Sum_probs=11.6

Q ss_pred             HHHHHHHHHhhcchHHHHHHHH
Q 036703           90 WINFADFEMKMGEVDRARNVYE  111 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~A~~~~~  111 (365)
                      ...++..+...|+.++|+..++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            3445555555555555555443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=90.86  E-value=1.3  Score=31.37  Aligned_cols=39  Identities=8%  Similarity=0.040  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCcccc
Q 036703          326 YAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLW  364 (365)
Q Consensus       326 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~~~  364 (365)
                      .+....+..+...|++..|.++.+...+..|.+.|..+|
T Consensus        53 ~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W   91 (126)
T PF12921_consen   53 RLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFW   91 (126)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            344444444444445555555555444444444444444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=90.80  E-value=0.43  Score=23.54  Aligned_cols=26  Identities=12%  Similarity=0.110  Sum_probs=15.3

Q ss_pred             HHHHHHHHhhccchhHHHHHHHHHhc
Q 036703          328 WSKYTELEKSLDETERARAIFELAIA  353 (365)
Q Consensus       328 ~~~~~~~~~~~g~~~~A~~~~~~a~~  353 (365)
                      |..+...+.+.|+.++|.++|++..+
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~   28 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRE   28 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhH
Confidence            45555566666666666666665543

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=90.47  E-value=0.54  Score=23.15  Aligned_cols=13  Identities=15%  Similarity=0.411  Sum_probs=4.6

Q ss_pred             HHhccHHHHHHHH
Q 036703           64 LRYNEVQRARHIF   76 (365)
Q Consensus        64 ~~~~~~~~A~~~~   76 (365)
                      .+.|++++|..+|
T Consensus        11 ~~~~~~~~a~~~~   23 (31)
T PF01535_consen   11 CKMGQFEEALEVF   23 (31)
T ss_pred             HccchHHHHHHHH
Confidence            3333333333333

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.03  E-value=4.8  Score=34.42  Aligned_cols=92  Identities=9%  Similarity=0.021  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------CCcc
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQC----------HPYN   86 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----------~p~~   86 (365)
                      .++..++..|...|+++.|.+.|.|+-..+.+    ...|..+..+..-.|++.....+-.++.+.          .|  
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~--  228 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP--  228 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC--
Confidence            45677899999999999999999997776665    467888888888888887777777666554          22  


Q ss_pred             hHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703           87 LSAWINFADFEMKMGEVDRARNVYECAV  114 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~  114 (365)
                      +.+...-|......+++..|.+.|-.+.
T Consensus       229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  229 AKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            2233333444444557777777766554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.65  E-value=0.64  Score=24.67  Aligned_cols=28  Identities=29%  Similarity=0.316  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703          293 IFKKYIEMELCLGNIDPCRKLYEKYLEW  320 (365)
Q Consensus       293 ~~~~~~~~~~~~~~~~~A~~~~~~al~~  320 (365)
                      ++..+|++....++|++|..-|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            5566777777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.27  E-value=7.6  Score=29.08  Aligned_cols=119  Identities=8%  Similarity=-0.065  Sum_probs=80.2

Q ss_pred             HhcCChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH-----HHHHHHHHhhcc
Q 036703           31 ENLGNVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW-----INFADFEMKMGE  102 (365)
Q Consensus        31 ~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-----~~~~~~~~~~~~  102 (365)
                      .+.++.++|..-|...-+-.-.   .-+....+.+....|+...|...|..+-...| .|.+.     +.-+-++...|.
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHHHHHHHHHhcccc
Confidence            3456677777777766543322   23445566777888999999999999887766 55444     344556777888


Q ss_pred             hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703          103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus       103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      ++......+-.-...+    +.....--.++..-.   +.|++..|.+.|.+...
T Consensus       148 y~dV~srvepLa~d~n----~mR~sArEALglAa~---kagd~a~A~~~F~qia~  195 (221)
T COG4649         148 YDDVSSRVEPLAGDGN----PMRHSAREALGLAAY---KAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHhhhccCCCC----hhHHHHHHHHhHHHH---hccchHHHHHHHHHHHc
Confidence            8876665554332212    223555566676667   89999999999998776

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=89.25  E-value=12  Score=31.15  Aligned_cols=168  Identities=12%  Similarity=-0.008  Sum_probs=106.6

Q ss_pred             hcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh----hcch
Q 036703           32 NLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR----YNEVQRARHIFERLVQCHPYNLSAWINFADFEMK----MGEV  103 (365)
Q Consensus        32 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~  103 (365)
                      ..+++..|...+.++-.... ...-..++.++..    ..+..+|...|+.+  .....+.....+|.++..    ..+.
T Consensus        53 ~~~~~~~a~~~~~~a~~~~~-~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~  129 (292)
T COG0790          53 YPPDYAKALKSYEKAAELGD-AAALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDL  129 (292)
T ss_pred             ccccHHHHHHHHHHhhhcCC-hHHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCH
Confidence            34567778888877765211 2333444544443    34688899999844  444467788889998887    3488


Q ss_pred             HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc-------chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 036703          104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC-------KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK  176 (365)
Q Consensus       104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  176 (365)
                      .+|...|.++.+. ....   .......++.++.   .-       .+...|...|.++-.....    .....++.++.
T Consensus       130 ~~A~~~~~~Aa~~-g~~~---a~~~~~~l~~~~~---~g~~~~~~~~~~~~A~~~~~~aa~~~~~----~a~~~lg~~y~  198 (292)
T COG0790         130 VKALKYYEKAAKL-GNVE---AALAMYRLGLAYL---SGLQALAVAYDDKKALYLYRKAAELGNP----DAQLLLGRMYE  198 (292)
T ss_pred             HHHHHHHHHHHHc-CChh---HHHHHHHHHHHHH---cChhhhcccHHHHhHHHHHHHHHHhcCH----HHHHHHHHHHH
Confidence            9999999999988 3221   0233666677666   32       1344799999988775432    33344443332


Q ss_pred             -HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 036703          177 -QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVG  221 (365)
Q Consensus       177 -~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  221 (365)
                       ..|....     ..+|...|.++-+...  ...++.++ ++...|
T Consensus       199 ~G~Gv~~d-----~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         199 KGLGVPRD-----LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             cCCCCCcC-----HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence             2342222     4479999999998766  77788888 555454

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.04  E-value=15  Score=32.19  Aligned_cols=129  Identities=13%  Similarity=0.002  Sum_probs=88.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703           26 YIRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK   99 (365)
Q Consensus        26 ~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~   99 (365)
                      -|-++.+++++.+|.++|.+..+...+      .++....+--..-.++.+.....+...-+..|.++.+-.-.+-...+
T Consensus        12 Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~   91 (549)
T PF07079_consen   12 QGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK   91 (549)
T ss_pred             hhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            466778899999999999999865443      12332322222235667777777777777888777777777888889


Q ss_pred             hcchHHHHHHHHHHHhhhhcCC---------hhhHHHHHH--HHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703          100 MGEVDRARNVYECAVEIFLADD---------HDEAEQLFV--AFAKFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus       100 ~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      .+.+.+|.+.+..--.. ....         ..-....|+  ..+..+.   ..|++.+++.++++.+..
T Consensus        92 ~k~~~kal~~ls~w~~~-~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLI---e~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   92 QKEYRKALQALSVWKEQ-IKGTESPWLDTNIQQLFSDFFLDEIEAHSLI---ETGRFSEGRAILNRIIER  157 (549)
T ss_pred             hhhHHHHHHHHHHHHhh-hcccccchhhhhHHHHhhHHHHHHHHHHHHH---hcCCcchHHHHHHHHHHH
Confidence            99999999888766554 2211         000122232  3456677   899999999999998864

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.82  E-value=0.88  Score=25.11  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=12.4

Q ss_pred             HHHHHHhhccchhHHHHHHHHHh
Q 036703          330 KYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       330 ~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                      .++..|...|+.+.|+.+++.++
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHH
Confidence            44555555555555555555555

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=88.81  E-value=4.1  Score=25.77  Aligned_cols=48  Identities=10%  Similarity=0.118  Sum_probs=23.4

Q ss_pred             hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHH
Q 036703           99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCI  151 (365)
Q Consensus        99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  151 (365)
                      ..++.++|+..++++++. .++. ++...++-.++..+.   ..|++.+.++.
T Consensus        18 ~~~~~~~Al~~W~~aL~k-~~~~-~~rf~~lG~l~qA~~---e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEK-ITDR-EDRFRVLGYLIQAHM---EWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhh-cCCh-HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            345555666666666665 5543 222333333334444   55555554444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=88.52  E-value=5.1  Score=32.37  Aligned_cols=61  Identities=21%  Similarity=0.093  Sum_probs=54.5

Q ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           60 IKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      =..+...++.+.|..+.++.+..+|.++.-+..-|.+|.+.|-+..|++-++..++. .|++
T Consensus       188 k~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~-~P~~  248 (269)
T COG2912         188 KAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH-CPDD  248 (269)
T ss_pred             HHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh-CCCc
Confidence            355667788999999999999999999999999999999999999999999999998 8886

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=88.00  E-value=6.5  Score=31.78  Aligned_cols=61  Identities=13%  Similarity=-0.071  Sum_probs=36.3

Q ss_pred             HHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH
Q 036703           29 MEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA   89 (365)
Q Consensus        29 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   89 (365)
                      .+...++.+.|..+.++.+.++|+ +.-|.--|-+|.+.|.+..|++-++..++..|+++.+
T Consensus       190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            344455566666666666666665 4455555666666666666666666666666655444

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=87.91  E-value=13  Score=30.24  Aligned_cols=116  Identities=11%  Similarity=0.066  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHhhcchH-HHHHHHHHHHhhhh--cCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhH
Q 036703           89 AWINFADFEMKMGEVD-RARNVYECAVEIFL--ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE  165 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~-~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  165 (365)
                      ....++.+....+.-+ .-.++.+++++. .  +.....++.++..+|..+.   +.|++.+|+.+|-.+     ++...
T Consensus        51 ~~~rl~~l~~~~~~~~p~r~~fi~~ai~W-S~~~~~~~Gdp~LH~~~a~~~~---~e~~~~~A~~Hfl~~-----~~~~~  121 (260)
T PF04190_consen   51 SIARLIELISLFPPEEPERKKFIKAAIKW-SKFGSYKFGDPELHHLLAEKLW---KEGNYYEAERHFLLG-----TDPSA  121 (260)
T ss_dssp             HHHHHHHHHHHS-TT-TTHHHHHHHHHHH-HHTSS-TT--HHHHHHHHHHHH---HTT-HHHHHHHHHTS------HHHH
T ss_pred             HHHHHHHHHHhCCCCcchHHHHHHHHHHH-HccCCCCCCCHHHHHHHHHHHH---hhccHHHHHHHHHhc-----CChhH
Confidence            3344454444443222 234455555555 3  1112345899999999999   999999999887543     11111


Q ss_pred             HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhc
Q 036703          166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRL-EERVGNQERVREVYERAIAN  236 (365)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~-~~~~~~~~~A~~~~~~~~~~  236 (365)
                      .....+.                       +....+..|...+.+...+.+ +...++...|...+..-++.
T Consensus       122 ~~~~~ll-----------------------~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~  170 (260)
T PF04190_consen  122 FAYVMLL-----------------------EEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK  170 (260)
T ss_dssp             HHHHHHH-----------------------HHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-----------------------HHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            1111111                       122223445556666666654 66788888888887766655

; PDB: 3LKU_E 2WPV_G.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.88  E-value=25  Score=33.41  Aligned_cols=83  Identities=16%  Similarity=0.148  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhh-CCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHW-MPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      ..+...||..+.+.|++++|...|-+.+.. .|. .+    +.-+.......+-..+++...+..-.+..--..+..+|.
T Consensus       368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-~V----i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYi  442 (933)
T KOG2114|consen  368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-EV----IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYI  442 (933)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-HH----HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHH
Confidence            456788999999999999999999888853 332 11    111222333444445555555544444444445555666


Q ss_pred             hhcchHHHH
Q 036703           99 KMGEVDRAR  107 (365)
Q Consensus        99 ~~~~~~~A~  107 (365)
                      +.++.++-.
T Consensus       443 Klkd~~kL~  451 (933)
T KOG2114|consen  443 KLKDVEKLT  451 (933)
T ss_pred             HhcchHHHH
Confidence            665544433

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.88  E-value=7.1  Score=30.45  Aligned_cols=73  Identities=16%  Similarity=0.178  Sum_probs=47.9

Q ss_pred             HHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           63 KLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        63 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      +.+.+..++|+...+.-++..|.+...-..+.+++.-.|++++|..-++-+-+. .|.. .....+|..+..+..
T Consensus        11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l-~p~~-t~~a~lyr~lir~ea   83 (273)
T COG4455          11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL-SPQD-TVGASLYRHLIRCEA   83 (273)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc-Cccc-chHHHHHHHHHHHHH
Confidence            445566777777777777777777777777777777777777777777777666 6654 333444544444443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=87.86  E-value=19  Score=32.08  Aligned_cols=169  Identities=10%  Similarity=0.064  Sum_probs=100.0

Q ss_pred             hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCH
Q 036703          144 ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQ  223 (365)
Q Consensus       144 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  223 (365)
                      ...-...+..+.+....+   ...+...++.+...|+.         +--.+.++.++.+-+++..-..++..|.. ++.
T Consensus        81 k~~~veh~c~~~l~~~e~---kmal~el~q~y~en~n~---------~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~  147 (711)
T COG1747          81 KNQIVEHLCTRVLEYGES---KMALLELLQCYKENGNE---------QLYSLWERLVEYDFNDVVIGRELADKYEK-IKK  147 (711)
T ss_pred             HHHHHHHHHHHHHHhcch---HHHHHHHHHHHHhcCch---------hhHHHHHHHHHhcchhHHHHHHHHHHHHH-hch
Confidence            334444555555554332   23455566666555443         24456777778777787777788888776 888


Q ss_pred             HHHHHHHHHHHhcCCC-chhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHH-HHH
Q 036703          224 ERVREVYERAIANVPP-AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYI-EME  301 (365)
Q Consensus       224 ~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~  301 (365)
                      +++...|.+++...-+ .....    .-.+|-.+..+   -..+.+.-..+..+.-....   .  ....+..... .-|
T Consensus       148 sk~a~~f~Ka~yrfI~~~q~~~----i~evWeKL~~~---i~dD~D~fl~l~~kiqt~lg---~--~~~~Vl~qdv~~~Y  215 (711)
T COG1747         148 SKAAEFFGKALYRFIPRRQNAA----IKEVWEKLPEL---IGDDKDFFLRLQKKIQTKLG---E--GRGSVLMQDVYKKY  215 (711)
T ss_pred             hhHHHHHHHHHHHhcchhhhhh----HHHHHHHHHHh---ccccHHHHHHHHHHHHHhhc---c--chHHHHHHHHHHHh
Confidence            8999999999876433 11100    01244443322   23455555555444433221   0  1133333333 344


Q ss_pred             HHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh
Q 036703          302 LCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS  337 (365)
Q Consensus       302 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  337 (365)
                      ....++++|+.+....++.+..+..+.-.+...+..
T Consensus       216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd  251 (711)
T COG1747         216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD  251 (711)
T ss_pred             ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence            567889999999999999988888777777766554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=87.52  E-value=12  Score=32.30  Aligned_cols=88  Identities=13%  Similarity=0.025  Sum_probs=68.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhhCC-----------C------hHHH--HHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703           27 IRMEENLGNVAGARQIFERWMHWMP-----------D------HEGW--LSYIKFKLRYNEVQRARHIFERLVQCHPYNL   87 (365)
Q Consensus        27 ~~~~~~~g~~~~A~~~~~~al~~~p-----------~------~~~~--~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~   87 (365)
                      |....+++++..|.--|..++++..           .      ...|  ..+.-+|.+.++.+-|+.---+.+..+|...
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            4556677888888888888887532           2      1122  4567889999999999999999999999888


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703           88 SAWINFADFEMKMGEVDRARNVYECAV  114 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~  114 (365)
                      .-++.-|.++....++.+|-+.+--+.
T Consensus       263 rnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999988888877655544

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=87.24  E-value=1.5  Score=22.10  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=13.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHH
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWM   47 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al   47 (365)
                      |..+...+.+.|++++|.++|.++.
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~   27 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEML   27 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4445555555555555555555544

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=87.12  E-value=1.6  Score=22.02  Aligned_cols=26  Identities=15%  Similarity=0.301  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703           56 WLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus        56 ~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      |..+...+.+.|++++|..+|.++.+
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~   28 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLE   28 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44555555556666666666655543

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=86.69  E-value=4.2  Score=33.41  Aligned_cols=60  Identities=13%  Similarity=0.140  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh-CCChHHHHHHHHHHH
Q 036703            5 GRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW-MPDHEGWLSYIKFKL   64 (365)
Q Consensus         5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~   64 (365)
                      |+..|.+|..+.|.+...|..+|.+....|+.-.|+-.|-|++.. .|.+.+...+..+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~   61 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFE   61 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            567788888888888888888888888888888888888777743 333444444444443

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=86.61  E-value=2.9  Score=32.23  Aligned_cols=49  Identities=18%  Similarity=0.229  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703           70 QRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD  120 (365)
Q Consensus        70 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  120 (365)
                      +...+..++.+...| ++.++..++.++...|+.++|.....++... +|.
T Consensus       128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l-yP~  176 (193)
T PF11846_consen  128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRL-YPA  176 (193)
T ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCc
Confidence            334445555556666 6666666666666666666666666666666 663

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.57  E-value=8.5  Score=31.10  Aligned_cols=79  Identities=9%  Similarity=0.028  Sum_probs=51.9

Q ss_pred             ChhHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc------chHHHHHHHHHHHhhc
Q 036703           35 NVAGARQIFERWMHWMPD-------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY------NLSAWINFADFEMKMG  101 (365)
Q Consensus        35 ~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~~~~~~~~~  101 (365)
                      .....+.++++|......       ..+-..+|..+...|++++|..+|+.+......      ...+...+..+....|
T Consensus       153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~  232 (247)
T PF11817_consen  153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG  232 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            344566777777754432       334556788888888999999998888654331      2455566667777777


Q ss_pred             chHHHHHHHHHH
Q 036703          102 EVDRARNVYECA  113 (365)
Q Consensus       102 ~~~~A~~~~~~a  113 (365)
                      +.+..+.+.-++
T Consensus       233 ~~~~~l~~~leL  244 (247)
T PF11817_consen  233 DVEDYLTTSLEL  244 (247)
T ss_pred             CHHHHHHHHHHH
Confidence            777766654443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.54  E-value=14  Score=28.96  Aligned_cols=62  Identities=10%  Similarity=-0.003  Sum_probs=51.8

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFK   63 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~   63 (365)
                      +++|+...+.-++..|.+......|..++.-.|++++|..-++-+-++.|+    ..++..++.+.
T Consensus        17 L~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e   82 (273)
T COG4455          17 LQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE   82 (273)
T ss_pred             HHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence            467888888888899999999999999999999999999999999999988    34555555554

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.47  E-value=2  Score=23.71  Aligned_cols=26  Identities=31%  Similarity=0.450  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703          211 FDYIRLEERVGNQERVREVYERAIAN  236 (365)
Q Consensus       211 ~~~~~~~~~~~~~~~A~~~~~~~~~~  236 (365)
                      +.++..|...|+.+.|+.++++++..
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            46888999999999999999999954

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=86.36  E-value=36  Score=33.56  Aligned_cols=92  Identities=13%  Similarity=-0.002  Sum_probs=61.9

Q ss_pred             HHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHH----Hhc---cHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703           28 RMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKL----RYN---EVQRARHIFERLVQCHPYNLSAWINFADF   96 (365)
Q Consensus        28 ~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~----~~~---~~~~A~~~~~~~l~~~p~~~~~~~~~~~~   96 (365)
                      +.+.....++.|...|.|.-...|.    -++.+..|-...    ..|   .+++|..-|++.-. .|.-|--|..-|.+
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  561 (932)
T PRK13184        483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALV  561 (932)
T ss_pred             HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHH
Confidence            4555667788888888888888887    233333332222    223   45666666665432 34466677888888


Q ss_pred             HHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           97 EMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        97 ~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      |.+.|++++-+++|.-|++. .|..
T Consensus       562 ~~~~~~~~~~~~~~~~~~~~-~~~~  585 (932)
T PRK13184        562 YQRLGEYNEEIKSLLLALKR-YSQH  585 (932)
T ss_pred             HHHhhhHHHHHHHHHHHHHh-cCCC
Confidence            88888888888899888888 8875

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=85.71  E-value=6.3  Score=39.03  Aligned_cols=129  Identities=17%  Similarity=0.149  Sum_probs=95.4

Q ss_pred             HHHHHhcCChhHHHH------HHHH-HHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCcchHHH
Q 036703           27 IRMEENLGNVAGARQ------IFER-WMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQC--------HPYNLSAW   90 (365)
Q Consensus        27 ~~~~~~~g~~~~A~~------~~~~-al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~   90 (365)
                      +......|.+.+|.+      ++.+ .-.+.|+ ...+..++.++...|+.++|...-.++.-+        .|+....+
T Consensus       939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen  939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred             hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence            444555666666666      5542 2345666 678889999999999999999887766542        34556678


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhh---hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc
Q 036703           91 INFADFEMKMGEVDRARNVYECAVEIF---LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      ..++.++...++...|...+.++...-   .+.++|....+..++..++.   ..++++.|+++.+.|++.
T Consensus      1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~---~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL---GVEEADTALRYLESALAK 1086 (1236)
T ss_pred             hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh---hHHHHHHHHHHHHHHHHH
Confidence            888888888889999999999887751   23334555667778888888   889999999999999873

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=85.62  E-value=3.9  Score=31.49  Aligned_cols=50  Identities=18%  Similarity=0.187  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703           36 VAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY   85 (365)
Q Consensus        36 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~   85 (365)
                      .+..++..++.++..|++..+..++..+...|+.++|.....++....|.
T Consensus       127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~  176 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA  176 (193)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence            34566777888888999999999999999999999999999999999993

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=85.20  E-value=3  Score=20.91  Aligned_cols=25  Identities=8%  Similarity=0.254  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHH
Q 036703           56 WLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus        56 ~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      |..+...+.+.|+++.|..+|+.+.
T Consensus         4 y~~ll~a~~~~g~~~~a~~~~~~M~   28 (34)
T PF13812_consen    4 YNALLRACAKAGDPDAALQLFDEMK   28 (34)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3444444444444444444444443

>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996

Probab=85.15  E-value=3.1  Score=22.49  Aligned_cols=29  Identities=21%  Similarity=0.365  Sum_probs=14.8

Q ss_pred             HHHHHHhCCcchHHHHHHHHHHHhhcchH
Q 036703           76 FERLVQCHPYNLSAWINFADFEMKMGEVD  104 (365)
Q Consensus        76 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  104 (365)
                      |.+++-.+|++...+..+++++...|+..
T Consensus         5 ll~AI~~~P~ddt~RLvYADWL~e~gdp~   33 (42)
T TIGR02996         5 LLRAILAHPDDDTPRLVYADWLDEHGDPA   33 (42)
T ss_pred             HHHHHHhCCCCcchHHHHHHHHHHcCCHH
Confidence            34445555555555555555555555543

This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.70  E-value=7.4  Score=33.35  Aligned_cols=103  Identities=14%  Similarity=0.022  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCc
Q 036703          208 DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR  287 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~  287 (365)
                      .++..+++.|...|+.+.|.+.|.++..-+.+...      .+.+|+++...- ...|++.....+..++.+.......+
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh------vInm~ln~i~VS-I~~~nw~hv~sy~~~A~st~~~~~~~  223 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH------VINMCLNLILVS-IYMGNWGHVLSYISKAESTPDANENL  223 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH------HHHHHHHHHHHH-HhhcchhhhhhHHHHHHhCchhhhhH
Confidence            35667899999999999999999998777766543      267788877774 67888888888777777652000000


Q ss_pred             chh--HHHHHHHHHHHHHhCCCccHHHHHHHH
Q 036703          288 MEE--RRIFKKYIEMELCLGNIDPCRKLYEKY  317 (365)
Q Consensus       288 ~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a  317 (365)
                      -+.  +.+.+.-|......+++..|.+.|-.+
T Consensus       224 ~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  224 AQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             HHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            011  233444444455566888888777655

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=84.30  E-value=3.3  Score=20.75  Aligned_cols=29  Identities=21%  Similarity=0.337  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHW   49 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~   49 (365)
                      ..|..+...+.+.|+++.|..+|+.+.+.
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~   30 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQ   30 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            36788899999999999999999988753

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=84.05  E-value=24  Score=29.56  Aligned_cols=118  Identities=14%  Similarity=0.080  Sum_probs=71.6

Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHH
Q 036703           92 NFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKF  171 (365)
Q Consensus        92 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~  171 (365)
                      .+.+...+..+...-++.-..+++. +|.-    ..++..++.-     ...-..+|.++|+++++.....     +. -
T Consensus       189 eIMQ~AWRERnp~~RI~~A~~ALeI-N~eC----A~AyvLLAEE-----Ea~Ti~~AE~l~k~ALka~e~~-----yr-~  252 (556)
T KOG3807|consen  189 EIMQKAWRERNPPARIKAAYQALEI-NNEC----ATAYVLLAEE-----EATTIVDAERLFKQALKAGETI-----YR-Q  252 (556)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHhc-Cchh----hhHHHhhhhh-----hhhhHHHHHHHHHHHHHHHHHH-----Hh-h
Confidence            3344444556667777777888888 7765    6666666543     3456788999999998753221     11 1


Q ss_pred             HHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT--WFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      .+-...+|..              ++...+.+ .++.+  -..++.+..+.|+..+|.+.|+...+..|-.
T Consensus       253 sqq~qh~~~~--------------~da~~rRD-tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~  308 (556)
T KOG3807|consen  253 SQQCQHQSPQ--------------HEAQLRRD-TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL  308 (556)
T ss_pred             HHHHhhhccc--------------hhhhhhcc-cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH
Confidence            1111122211              11111221 23333  3457788899999999999999999988854

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.97  E-value=32  Score=30.94  Aligned_cols=252  Identities=12%  Similarity=0.024  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHH
Q 036703           70 QRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRAR  149 (365)
Q Consensus        70 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  149 (365)
                      +...+.+.......|+++...+..+..+...|+.+.|...++..+.. .-..  -..-.+...+..+.   .+.++.+|-
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~-~~kQ--~~~l~~fE~aw~~v---~~~~~~~aa  323 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPI-RMKQ--VKSLMVFERAWLSV---GQHQYSRAA  323 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccH-HHHH--HHHHHHHHHHHHHH---HHHHHHHHh
Confidence            45555666666788888888888899999989888888888887763 1110  11233445555555   667788888


Q ss_pred             HHHHHHhccCCCchhHHHHHHHHH--HHH-------H-cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 036703          150 CIYKFALDRIPKGRAEDLYRKFLA--FEK-------Q-YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER  219 (365)
Q Consensus       150 ~~~~~~l~~~p~~~~~~~~~~~~~--~~~-------~-~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~  219 (365)
                      ..+....+....+.   .++.|..  ++.       . .|+.+. ..    ...+.-+..+..-|++..+=..       
T Consensus       324 d~~~~L~desdWS~---a~Y~Yfa~cc~l~~~~~~q~~~~ne~~-a~----~~~k~~~~l~~~a~K~~P~E~f-------  388 (546)
T KOG3783|consen  324 DSFDLLRDESDWSH---AFYTYFAGCCLLQNWEVNQGAGGNEEK-AQ----LYFKVGEELLANAGKNLPLEKF-------  388 (546)
T ss_pred             hHHHHHHhhhhhhH---HHHHHHHHHHHhccHHHHHhcccchhH-HH----HHHHHHHHHHHhccccCchhHH-------
Confidence            88887776554432   2222211  111       1 111111 11    1111222222222222111000       


Q ss_pred             hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHH
Q 036703          220 VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKY  297 (365)
Q Consensus       220 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~  297 (365)
                        -..+|.+.-.+.- ..+...-...+...+++|..+-      ....++.. -+..... .|...+  ++  .-.+...
T Consensus       389 --~~RKverf~~~~~-~~~~~~la~P~~El~Y~Wngf~------~~s~~~l~-k~~~~~~-~~~~~d--~Dd~~lk~lL~  455 (546)
T KOG3783|consen  389 --IVRKVERFVKRGP-LNASILLASPYYELAYFWNGFS------RMSKNELE-KMRAELE-NPKIDD--SDDEGLKYLLK  455 (546)
T ss_pred             --HHHHHHHHhcccc-ccccccccchHHHHHHHHhhcc------cCChhhHH-HHHHHHh-ccCCCC--chHHHHHHHHH
Confidence              0111111111110 0001000000111234444432      22222222 1111111 121111  33  3334556


Q ss_pred             HHHHHHhCCCccHHHHHHHHHhh------Ccc-hHHHHHHHHHHHhhccc-hhHHHHHHHHHhcCc
Q 036703          298 IEMELCLGNIDPCRKLYEKYLEW------SPE-NCYAWSKYTELEKSLDE-TERARAIFELAIAQP  355 (365)
Q Consensus       298 ~~~~~~~~~~~~A~~~~~~al~~------~p~-~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~~  355 (365)
                      |.+....|+...|..+|...++.      +|- -|-+++.+|.++...|. ..+++..+.+|-+-.
T Consensus       456 g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~  521 (546)
T KOG3783|consen  456 GVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA  521 (546)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence            77778889999999999988743      111 35678888888888887 899999999887544

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=83.89  E-value=28  Score=30.27  Aligned_cols=59  Identities=20%  Similarity=0.209  Sum_probs=37.4

Q ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703          216 LEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF  280 (365)
Q Consensus       216 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  280 (365)
                      -....+++..|..+++......|.+..   +..+..+...|..|   ..-++.+|.+.++..+..
T Consensus       140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~---~~~~~~l~~~y~~W---D~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  140 ELFNRYDYGAAARILEELLRRLPGREE---YQRYKDLCEGYDAW---DRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCchhh---HHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHH
Confidence            345778888888888888876555432   22223333333333   567788888888877664

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=83.88  E-value=24  Score=29.48  Aligned_cols=105  Identities=10%  Similarity=0.037  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP------YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE  126 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  126 (365)
                      .++|...+.++.+.||.+.|.+.+.+.....-      +-.-..+.+|.+|....-..+.++..+..++. .++- ...-
T Consensus       104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~-GgDW-eRrN  181 (393)
T KOG0687|consen  104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE-GGDW-ERRN  181 (393)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCh-hhhh
Confidence            57999999999999999999999887665322      12334456677776655444444444444444 3221 1112


Q ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703          127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      .+-...|-+..   ...++.+|-.+|-.++....+.
T Consensus       182 RlKvY~Gly~m---svR~Fk~Aa~Lfld~vsTFtS~  214 (393)
T KOG0687|consen  182 RLKVYQGLYCM---SVRNFKEAADLFLDSVSTFTSY  214 (393)
T ss_pred             hHHHHHHHHHH---HHHhHHHHHHHHHHHcccccce
Confidence            22223344444   6788999999999998876654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=83.79  E-value=8.8  Score=24.35  Aligned_cols=47  Identities=13%  Similarity=0.063  Sum_probs=29.9

Q ss_pred             HhccHHHHHHHHHHHHHhCCcchHHHHHHHH---HHHhhcchHHHHHHHH
Q 036703           65 RYNEVQRARHIFERLVQCHPYNLSAWINFAD---FEMKMGEVDRARNVYE  111 (365)
Q Consensus        65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~---~~~~~~~~~~A~~~~~  111 (365)
                      ..++.++|+....++++..++.+.-|..+|-   .+...|++.++++.-.
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~   67 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL   67 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566677888888888777766666665553   4455566655555433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus

Probab=82.73  E-value=11  Score=31.78  Aligned_cols=67  Identities=12%  Similarity=0.184  Sum_probs=52.1

Q ss_pred             hcCC-hhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-hHHHHHHHHHHH
Q 036703           32 NLGN-VAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN-LSAWINFADFEM   98 (365)
Q Consensus        32 ~~g~-~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~   98 (365)
                      ..|- .++....+...++.-|+    ...|+.++.++...|.++..+.+|++|+.....- .++-..+.+++.
T Consensus       114 ~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~  186 (353)
T PF15297_consen  114 EEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK  186 (353)
T ss_pred             HcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            3444 35788899999998898    5799999999999999999999999999876532 344455556654

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=82.57  E-value=21  Score=30.99  Aligned_cols=94  Identities=12%  Similarity=0.018  Sum_probs=67.7

Q ss_pred             hHHHHHHH----HHHHHhccHHHHHHHHHHHHHhCCc-------------c-----hHHHHHHHHHHHhhcchHHHHHHH
Q 036703           53 HEGWLSYI----KFKLRYNEVQRARHIFERLVQCHPY-------------N-----LSAWINFADFEMKMGEVDRARNVY  110 (365)
Q Consensus        53 ~~~~~~~~----~~~~~~~~~~~A~~~~~~~l~~~p~-------------~-----~~~~~~~~~~~~~~~~~~~A~~~~  110 (365)
                      .+-|+..+    ..+.++++|..|.--|..+++...+             +     .-+-..+..+|.+.++.+-|+..-
T Consensus       172 iDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~  251 (569)
T PF15015_consen  172 IDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHS  251 (569)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence            44565543    4456778888888888777764321             1     123456778999999999999999


Q ss_pred             HHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 036703          111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKF  154 (365)
Q Consensus       111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  154 (365)
                      .+.+.. +|..    ..-++.-|.+..   ...+|.+|-+.+--
T Consensus       252 hrsI~l-nP~~----frnHLrqAavfR---~LeRy~eAarSami  287 (569)
T PF15015_consen  252 HRSINL-NPSY----FRNHLRQAAVFR---RLERYSEAARSAMI  287 (569)
T ss_pred             hhhhhc-Ccch----hhHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            999999 8876    677777777777   77788777665543

>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996

Probab=82.48  E-value=5.1  Score=21.71  Aligned_cols=29  Identities=21%  Similarity=0.169  Sum_probs=15.8

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHhcCChh
Q 036703            9 WDRVVTLSPRVDQLWNNYIRMEENLGNVA   37 (365)
Q Consensus         9 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~   37 (365)
                      |.+++..+|++...+..|+..+...|+..
T Consensus         5 ll~AI~~~P~ddt~RLvYADWL~e~gdp~   33 (42)
T TIGR02996         5 LLRAILAHPDDDTPRLVYADWLDEHGDPA   33 (42)
T ss_pred             HHHHHHhCCCCcchHHHHHHHHHHcCCHH
Confidence            44455555555555555555555555543

This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.26  E-value=13  Score=33.88  Aligned_cols=78  Identities=15%  Similarity=0.219  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE  102 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  102 (365)
                      ....+.++.++|-.++|       +++.|++.-.+   .+..+.|+++.|.++..+     .++..=|..+|+.....++
T Consensus       617 rt~va~Fle~~g~~e~A-------L~~s~D~d~rF---elal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~  681 (794)
T KOG0276|consen  617 RTKVAHFLESQGMKEQA-------LELSTDPDQRF---ELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGE  681 (794)
T ss_pred             hhhHHhHhhhccchHhh-------hhcCCChhhhh---hhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhccc
Confidence            45556666666644443       44444422221   223345555555554322     2345556666666666666


Q ss_pred             hHHHHHHHHHHHh
Q 036703          103 VDRARNVYECAVE  115 (365)
Q Consensus       103 ~~~A~~~~~~a~~  115 (365)
                      +..|.++|.++..
T Consensus       682 l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  682 LPLASECFLRARD  694 (794)
T ss_pred             chhHHHHHHhhcc
Confidence            6666666666644

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=82.25  E-value=14  Score=29.81  Aligned_cols=88  Identities=15%  Similarity=0.128  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHH
Q 036703          223 QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMEL  302 (365)
Q Consensus       223 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  302 (365)
                      ....+.++++++.........++   ...+-..+|..+ ...|++++|.++|+.+..........-....+...+..+..
T Consensus       154 s~~iI~lL~~A~~~f~~~~~~R~---~~~l~~~~A~ey-~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~  229 (247)
T PF11817_consen  154 SKLIIELLEKAYEQFKKYGQNRM---ASYLSLEMAEEY-FRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAK  229 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhccchH---HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            33455555555554332221111   112444566665 57788888888888885543211110011455556666666


Q ss_pred             HhCCCccHHHHH
Q 036703          303 CLGNIDPCRKLY  314 (365)
Q Consensus       303 ~~~~~~~A~~~~  314 (365)
                      ..|+.+....+.
T Consensus       230 ~~~~~~~~l~~~  241 (247)
T PF11817_consen  230 RLGDVEDYLTTS  241 (247)
T ss_pred             HhCCHHHHHHHH
Confidence            667666655543

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=80.48  E-value=38  Score=29.38  Aligned_cols=179  Identities=8%  Similarity=-0.020  Sum_probs=110.5

Q ss_pred             hcCChh-HHHHHHHHHHhhCCC-hHHHHHHHHHH------------HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703           32 NLGNVA-GARQIFERWMHWMPD-HEGWLSYIKFK------------LRYNEVQRARHIFERLVQCHPYNLSAWINFADFE   97 (365)
Q Consensus        32 ~~g~~~-~A~~~~~~al~~~p~-~~~~~~~~~~~------------~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~   97 (365)
                      ..|.++ .+.+.-...+..+|+ ...|..-=.+.            ..+.-.+.-..+...++..+|++..+|.....++
T Consensus        40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L  119 (421)
T KOG0529|consen   40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL  119 (421)
T ss_pred             hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            344443 577777778888888 45554322111            1222345666778889999999999999999999


Q ss_pred             Hhhc--chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703           98 MKMG--EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGC-NCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF  174 (365)
Q Consensus        98 ~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  174 (365)
                      .+.+  ++..=+.+.+++++. .|.+    ...|...--+..+-. ......+=+++..++|..++.+  ...|.--..+
T Consensus       120 ~~~p~~~~~~EL~lcek~L~~-D~RN----fh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSN--YsaWhyRs~l  192 (421)
T KOG0529|consen  120 QKNPHSDWNTELQLCEKALKQ-DPRN----FHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSN--YSAWHYRSLL  192 (421)
T ss_pred             HhCCCchHHHHHHHHHHHHhc-Cccc----ccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchh--hhHHHHHHHH
Confidence            8866  467788999999999 8887    555543222222000 2223455667778888887776  3344433333


Q ss_pred             HH-HcCCc--h-hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 036703          175 EK-QYGDR--E-GIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLE  217 (365)
Q Consensus       175 ~~-~~~~~--~-~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~  217 (365)
                      .. ..+..  . .+....+..-......++-.+|++..+|+...-+.
T Consensus       193 L~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl  239 (421)
T KOG0529|consen  193 LSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL  239 (421)
T ss_pred             HHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence            32 11111  1 12233344555666778888999999998755444

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=80.32  E-value=31  Score=28.27  Aligned_cols=61  Identities=15%  Similarity=0.124  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           72 ARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        72 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      |+..|.+|+...|++...+..+|.+....|+.-.|+=.|-|++-...|.     +.+..++..+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf-----~~A~~NL~~lf~   61 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF-----PSARENLQKLFE   61 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB-------HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHH
Confidence            5677888888888888888888888888787777777777777552221     455555555554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]

Probab=80.25  E-value=7  Score=35.34  Aligned_cols=40  Identities=20%  Similarity=0.268  Sum_probs=24.4

Q ss_pred             hHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCccc
Q 036703          324 NCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFL  363 (365)
Q Consensus       324 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~~  363 (365)
                      ...+|..++..+.+.+++..|+.-|.++++....|.|+.+
T Consensus       586 ~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi  625 (1141)
T KOG1811|consen  586 TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVI  625 (1141)
T ss_pred             cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHH
Confidence            3446666666666666666666666666666555666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	365
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	2e-43
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	5e-15
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	6e-15
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	1e-11
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	1e-06
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	5e-39
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	1e-37
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	8e-17
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	7e-16
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	8e-15
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	1e-14
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	3e-11
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-09
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-06
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	4e-31
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-19
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	4e-19
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	6e-16
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	4e-21
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	2e-17
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	9e-17
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	2e-16
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	1e-14
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	2e-13
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	3e-10
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	4e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-04

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score =  156 bits (395), Expect = 2e-43
 Identities = 49/397 (12%), Positives = 124/397 (31%), Gaps = 53/397 (13%)

Query: 10  DRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNE- 68
           +  + +          + R      +      +F R +    + + W+ YI++  + ++ 
Sbjct: 4   EEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQK 63

Query: 69  VQRARHIFERLVQC---HPYNLSAWINFADFEMKMGE----VDRARNVYECAVEIFLADD 121
             +   ++E  +     +  +   +  + + E K+ +    +++ RN Y  A++      
Sbjct: 64  KFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP---- 119

Query: 122 HDEAEQLFVAFAKFEE----------MGCNCKETDRARCIYKFALDRIPKGRAEDLYRKF 171
                +L+  F  FE           +G        +   Y+  +  + +G +     + 
Sbjct: 120 MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQ-IQPLIRGWSVKNAARL 178

Query: 172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYE 231
           +  E + G + G       +M   +   +       + +F Y      +G +E+ ++V E
Sbjct: 179 IDLEMENGMKLG-GRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVE 237

Query: 232 RAIANVPPAEEKRYWQRYIYLWINYALYKEV-DAGDLERTRDVYRTLFIFYFSFSPRMEE 290
           R I          Y+   +     Y   K     G+ E    V+                
Sbjct: 238 RGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297

Query: 291 RR---------------------IFKKYIEMELCL-GNIDPCRKLYEKYLEWSPENCYAW 328
           ++                     +F     +E    G+      ++   L   P++    
Sbjct: 298 KKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK 357

Query: 329 SKYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
            ++      + + E ARA+F+        +    +W 
Sbjct: 358 EEFFLFLLRIGDEENARALFKRL------EKTSRMWD 388

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 74.9 bits (183), Expect = 5e-15
 Identities = 43/347 (12%), Positives = 112/347 (32%), Gaps = 58/347 (16%)

Query: 2   IDHGRNAWDR-VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--------- 51
           I+  RN + R + T    + +LW ++   E  L  + G + + +    +           
Sbjct: 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQ 164

Query: 52  ------DHEGWLSYIKFKLRYNE-------VQRARHIFERLVQCHPYNLSAWINFADFEM 98
                   +     I  ++             R   I   ++    Y    +  ++++ +
Sbjct: 165 PLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLI 224

Query: 99  KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR 158
            +G+ ++A+ V E  +E+           +F++      M       D  R       + 
Sbjct: 225 GIGQKEKAKKVVERGIEMSDG--------MFLSLYYGLVMDEEAVYGDLKRKYSMGEAES 276

Query: 159 IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEE 218
             K  +++L    +        + G+E      + L          +    +     +E 
Sbjct: 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL------GNEGVGPHVFIYCAFIEY 330

Query: 219 RV-GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL 277
              G++     ++   +   P  +     + +    +          GD E  R +++ L
Sbjct: 331 YATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRI--------GDEENARALFKRL 380

Query: 278 FIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN 324
                      +  R++   IE E  +G+++  R+L ++ ++    +
Sbjct: 381 ----------EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKAD 417

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 74.9 bits (183), Expect = 6e-15
 Identities = 37/276 (13%), Positives = 79/276 (28%), Gaps = 29/276 (10%)

Query: 6   RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR 65
               + ++      ++++  Y      +G    A+++ ER +         L Y      
Sbjct: 199 HFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDE 258

Query: 66  YNEVQRARHIFERLVQC------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA 119
                  +  +                    IN  ++ +K   ++  R ++         
Sbjct: 259 EAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFI------EL 312

Query: 120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179
            +      +F+  A  E              I+   L + P   +  L  +F  F  + G
Sbjct: 313 GNEGVGPHVFIYCAFIEY--YATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIG 368

Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP 239
           D E          R  ++    +       W   I  E  VG+ E  RE+ ++ +  +  
Sbjct: 369 DEE--------NARALFK----RLEKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKA 416

Query: 240 -AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVY 274
            A       R   + +   L +     D     D+ 
Sbjct: 417 DAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLK 452

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 64.5 bits (156), Expect = 1e-11
 Identities = 35/286 (12%), Positives = 90/286 (31%), Gaps = 20/286 (6%)

Query: 76  FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF 135
            E  +     + SA +  A       +     +++   ++     D      L++ + ++
Sbjct: 3   AEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLD------LWMLYIEY 56

Query: 136 EEMGCNCKETDRARCIYKFALDRIPKGR-AEDLYRKFLAFEKQYGDREGIEDAIAGKMRL 194
                  ++  +   +Y+F L +      +  LY++++  E +  D +   + I    R 
Sbjct: 57  VRK--VSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKI----RN 110

Query: 195 QYEDGVRKNPMNYD-TWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYI--- 250
            Y   ++    +    W D+   E  +      + V +         +  +  Q  I   
Sbjct: 111 GYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170

Query: 251 --YLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNID 308
                      +  +   L       R  FI  +          ++  Y E  + +G  +
Sbjct: 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKE 230

Query: 309 PCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQ 354
             +K+ E+ +E S    +    Y  +          +  + +  A+
Sbjct: 231 KAKKVVERGIEMSD-GMFLSLYYGLVMDEEAVYGDLKRKYSMGEAE 275

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 23/164 (14%), Positives = 55/164 (33%), Gaps = 20/164 (12%)

Query: 194 LQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLW 253
           +  E+ +     +     ++ R      +   +  ++ R +               + LW
Sbjct: 1   MDAEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY----------NLDLW 50

Query: 254 INYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIE----MELCLGNIDP 309
           + Y  Y    +    +  +VY         F    +   ++K+YIE    +E     I+ 
Sbjct: 51  MLYIEYVRKVSQKKFKLYEVYEFTLGQ---FENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107

Query: 310 CRKLYEKYLEWSPENCYA--WSKYTELEKSLDETERARAIFELA 351
            R  Y + L+ +P    +  W  +   E  L++    + + +  
Sbjct: 108 IRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTL 150

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score =  144 bits (364), Expect = 5e-39
 Identities = 61/411 (14%), Positives = 137/411 (33%), Gaps = 55/411 (13%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           ID  R  ++R+V   P   + W  YI  E    N     ++F+R +  +   + W  Y+ 
Sbjct: 28  IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87

Query: 62  FKLRYNE-----VQRARHIFERLVQ---CHPYNLSAWINFADFEMKMGE---------VD 104
           +            ++    ++  +        +   W+++ +F   +           + 
Sbjct: 88  YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRIT 147

Query: 105 RARNVYECAVEIFLADDH-----------------------DEAEQLFVAFAKFEEMGCN 141
             R VY+      + +                         D +     A    +E    
Sbjct: 148 AVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETV 207

Query: 142 CKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR 201
            K  DR         +   + +  D+++K++ +EK    R   +  I  ++   YE  + 
Sbjct: 208 MKGLDRNA-PSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266

Query: 202 KNPMNYDTWFDYIRLEERVGN------QERVREVYERAIANVPPAEEKRYWQRYIYLWIN 255
               + D W++  +  E+              +++    AN+         ++ + L+  
Sbjct: 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326

Query: 256 YALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYE 315
           YA Y E      E+   +Y  L           +   ++ +Y++       I   R +++
Sbjct: 327 YADY-EESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKFARRAEGIKSGRMIFK 380

Query: 316 KYLEWSPENCYAWSKYTELE-KSLDETERARAIFELAIAQPILDLPEFLWK 365
           K  E +    + +     +E     +   A  IFEL + +   D+PE++  
Sbjct: 381 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLA 430

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score =  141 bits (355), Expect = 1e-37
 Identities = 62/420 (14%), Positives = 129/420 (30%), Gaps = 70/420 (16%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG------ 55
            D     + R +     +D        + E  G +   ++   +   +  D  G      
Sbjct: 62  YDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121

Query: 56  --WLSYIKFKLRYNE---------VQRARHIFERLVQCHPYNL-SAWINFADFEMKMGEV 103
             W+ YI F               +   R +++R       N+   W ++  +E  +   
Sbjct: 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIH 181

Query: 104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR 163
              + + + + +   A     A++        +                    +   + +
Sbjct: 182 LAKKMIEDRSRDYMNARRV--AKEYETVMKGLDR-----------NAPSVPPQNTPQEAQ 228

Query: 164 AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGN- 222
             D+++K++ +EK    R   +  I  ++   YE  +     + D W++  +  E+    
Sbjct: 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKL 288

Query: 223 -----QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL 277
                     +++    AN+         ++ + L+  YA Y E      E+   +Y  L
Sbjct: 289 LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY-EESRMKYEKVHSIYNRL 347

Query: 278 -----------FIFYFSFSPRMEE----RRIFKKYIE---------------MELCLGNI 307
                      +I Y  F+ R E     R IFKK  E                  C  + 
Sbjct: 348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 407

Query: 308 DPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLP--EFLWK 365
               K++E  L+   +       Y +    L+E    R +FE  +    L       +W 
Sbjct: 408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 467

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 80.7 bits (198), Expect = 8e-17
 Identities = 36/267 (13%), Positives = 87/267 (32%), Gaps = 28/267 (10%)

Query: 9   WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWM--HWMPDHEGWLSYIKFKLRY 66
           W        +  +L      M         A  I+ER +      +   + +Y  ++   
Sbjct: 275 WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334

Query: 67  NEVQRARHIFERLVQCHPYNLS-AWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA 125
            + ++   I+ RL+     + +  +I +  F  +   +   R +++ A E     D    
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-----DARTR 389

Query: 126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE 185
             ++V  A  E      K+   A  I++  L +       +    ++ +     +     
Sbjct: 390 HHVYVTAALMEY--YCSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDYLSHLNEDN--- 442

Query: 186 DAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQERVREVYERAIANVPPAE 241
                  R+ +E  +    +  +     W  ++  E  +G+   + +V +R         
Sbjct: 443 -----NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497

Query: 242 EKR----YWQRYIYLWINYALYKEVDA 264
           E +       RY ++ +      E+ A
Sbjct: 498 EGKETALLVDRYKFMDLYPCSASELKA 524

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 78.0 bits (191), Expect = 7e-16
 Identities = 46/317 (14%), Positives = 101/317 (31%), Gaps = 46/317 (14%)

Query: 21  QLWNNYIRMEENLGN--------VAGARQIFERWMHWMP-DHEGWLSYIKF--------- 62
            +W  YI+ E++                  +E+ +  +    + W    ++         
Sbjct: 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 290

Query: 63  -----KLRYNEVQRARHIFERLVQ-CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
                         A +I+ER +      N+  +  +AD+E    + ++  ++Y   + I
Sbjct: 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350

Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
              D       +++ + KF       +     R I+K A +         +    + +  
Sbjct: 351 EDID----PTLVYIQYMKFAR---RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY-Y 402

Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236
              D+              +E G++K     +    YI     +      R ++ER + +
Sbjct: 403 CSKDKS--------VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454

Query: 237 VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKK 296
                EK        +W  +  + E + GDL     V +  F  +       E   +  +
Sbjct: 455 GSLPPEKS-----GEIWARFLAF-ESNIGDLASILKVEKRRFTAFREEYEGKETALLVDR 508

Query: 297 YIEMELCLGNIDPCRKL 313
           Y  M+L   +    + L
Sbjct: 509 YKFMDLYPCSASELKAL 525

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 74.5 bits (182), Expect = 8e-15
 Identities = 50/309 (16%), Positives = 114/309 (36%), Gaps = 15/309 (4%)

Query: 52  DHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYE 111
           D + W   I+   +   + +AR  +ERLV   P +   W  + + E+K    D+   +++
Sbjct: 12  DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQ 70

Query: 112 CAVEIFLADDHDEAEQLFVAFAKFEE--MGCNCKETDRARCIYKFALDRIPKG-RAEDLY 168
             +   L  D      L+  +  +     G      ++    Y FALD+I     +  ++
Sbjct: 71  RCLMKVLHID------LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIW 124

Query: 169 RKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY--DTWFDYIRLEERVGNQERV 226
             ++ F K         +        +       NPM      W DY + EE +      
Sbjct: 125 VDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAK 184

Query: 227 REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTR-DVYRTLFIFYFSFS 285
           + + +R+   +      + ++  +      A          E  + D+++    +  S  
Sbjct: 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244

Query: 286 PRMEERRIFKKYIE--MELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETER 343
            R E++ +  K +    E CL  +     ++ +  ++  ++    ++  ++  +   ++ 
Sbjct: 245 LRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304

Query: 344 ARAIFELAI 352
           A  I+E AI
Sbjct: 305 AANIYERAI 313

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 74.1 bits (181), Expect = 1e-14
 Identities = 44/350 (12%), Positives = 108/350 (30%), Gaps = 45/350 (12%)

Query: 19  VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFER 78
           ++QLW +Y + EE +      + I +R   +M        Y       +    A  +  +
Sbjct: 164 IEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR--NAPSVPPQ 221

Query: 79  LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIF---LADDHDEAEQLFVAFAKF 135
                   +  W  +  +E         + +    V                ++   A++
Sbjct: 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY 281

Query: 136 EEMGCN-----------CKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGI 184
            E                  +D A  IY+ A+  + K +   LY  +  +E+     E +
Sbjct: 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKV 340

Query: 185 EDAIAGKMRLQYEDGVRKNPMNYD-TWFDYIRLEERVGNQERVREVYERAIANVPPAEEK 243
                      Y   +    ++    +  Y++   R    +  R ++++A  +       
Sbjct: 341 HSI--------YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH-- 390

Query: 244 RYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC 303
                  ++++  AL +   + D      ++      Y       +       YI+    
Sbjct: 391 -------HVYVTAALMEYYCSKDKSVAFKIFELGLKKY------GDIPEYVLAYIDYLSH 437

Query: 304 LGNIDPCRKLYEKYLE----WSPENCYAWSKYTELEKSLDETERARAIFE 349
           L   +  R L+E+ L        ++   W+++   E ++ +      + +
Sbjct: 438 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 63.7 bits (154), Expect = 3e-11
 Identities = 51/311 (16%), Positives = 104/311 (33%), Gaps = 47/311 (15%)

Query: 75  IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAK 134
           + E+ ++ +PY+L AW      E +   +D+AR  YE  V  F       + + +  + +
Sbjct: 1   MAEKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFP-----SSGRFWKLYIE 54

Query: 135 FEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRL 194
            E      K  D+   +++  L ++      DL++ +L++ ++   +         +   
Sbjct: 55  AEI---KAKNYDKVEKLFQRCLMKVLH---IDLWKCYLSYVRETKGKLPSYKEKMAQAYD 108

Query: 195 QYEDGVRKNPMNYDTWFDYIRLEERVGN---------QERVREVYERAIANVPPAEEKRY 245
              D +    M+Y  W DYI   + V              VR VY+R     P    ++ 
Sbjct: 109 FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQL 167

Query: 246 WQRYIYLWIN----------------YALYKEVDAGDLERTRDVYRTLFIFYFSFSPRME 289
           W+ Y                      Y   + V        + + R         +P+  
Sbjct: 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227

Query: 290 ER-RIFKKYIEMELCLGN--------IDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDE 340
           ++  ++KKYI+ E                    YE+ L     +   W +  +  +   +
Sbjct: 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSK 287

Query: 341 TERARAIFELA 351
               +     A
Sbjct: 288 LLAEKGDMNNA 298

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 57.9 bits (139), Expect = 2e-09
 Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 18/178 (10%)

Query: 196 YEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWIN 255
            E  + +NP + D W   IR  +     ++ R+ YER +A  P +   R+W+ YI   I 
Sbjct: 2   AEKKLEENPYDLDAWSILIREAQN-QPIDKARKTYERLVAQFPSSG--RFWKLYIEAEIK 58

Query: 256 YALYKEVDAGDLERTRDVY--RTLFIFYFSFSPRM-----EERRIFKKYIEMEL-CLGNI 307
              Y +V+    +R         L+  Y S+           +    +  +  L  +G  
Sbjct: 59  AKNYDKVEK-LFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGME 117

Query: 308 DPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEFLWK 365
               +++  Y+ +  +   A   Y E ++        R +++     P++++ E LW+
Sbjct: 118 IMSYQIWVDYINF-LKGVEAVGSYAENQR----ITAVRRVYQRGCVNPMINI-EQLWR 169

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 5/88 (5%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-----EGW 56
                  ++  +     + +    YI    +L      R +FER +           E W
Sbjct: 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466

Query: 57  LSYIKFKLRYNEVQRARHIFERLVQCHP 84
             ++ F+    ++     + +R      
Sbjct: 467 ARFLAFESNIGDLASILKVEKRRFTAFR 494

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score =  119 bits (298), Expect = 4e-31
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 17/221 (7%)

Query: 1   FIDHGRNAWDR-VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEG--WL 57
           F D   N ++R + TL  +   L+  Y   EE+         I+ R +          ++
Sbjct: 79  FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYI 138

Query: 58  SYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKM-GEVDRARNVYECAVEI 116
            Y+KF  R   ++  R IF++  +        ++  A  E     +   A  ++E  ++ 
Sbjct: 139 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 198

Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR--IPKGRAEDLYRKFLAF 174
           +         +  +A+  +        E +  R +++  L    +P  ++ +++ +FLAF
Sbjct: 199 YGDI-----PEYVLAYIDYLSH---LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250

Query: 175 EKQYGDREGIEDA---IAGKMRLQYEDGVRKNPMNYDTWFD 212
           E   GD   I           R +YE       ++   + D
Sbjct: 251 ESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMD 291

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 87.0 bits (215), Expect = 2e-19
 Identities = 38/291 (13%), Positives = 94/291 (32%), Gaps = 51/291 (17%)

Query: 56  WLSYIKF--------KLRYNEVQRARHIFERLVQCHPYNLSAWINFADF----------- 96
           W  YI++        + +    +R    +E+ +    ++   W   A +           
Sbjct: 11  WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 70

Query: 97  ---EMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK 153
                     D A N+YE A+   L  +      L+ A+A +EE      + ++   IY 
Sbjct: 71  GDMNNAKLFSDEAANIYERAISTLLKKNM----LLYFAYADYEES---RMKYEKVHSIYN 123

Query: 154 FALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDY 213
             L          +Y +++ F ++    +          R+ ++         +  +   
Sbjct: 124 RLLAIEDIDPTL-VYIQYMKFARRAEGIK--------SGRMIFKKAREDARTRHHVYVTA 174

Query: 214 IRLEERV-GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRD 272
             +E     ++    +++E  +      +   Y   YI    +          +   TR 
Sbjct: 175 ALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHL--------NEDNNTRV 224

Query: 273 VYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE 323
           ++  +         +  E  I+ +++  E  +G++    K+ ++      E
Sbjct: 225 LFERVLTSGSLPPEKSGE--IWARFLAFESNIGDLASILKVEKRRFTAFRE 273

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 85.9 bits (212), Expect = 4e-19
 Identities = 50/325 (15%), Positives = 108/325 (33%), Gaps = 55/325 (16%)

Query: 21  QLWNNYIRMEENLGNV--------AGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQ- 70
            +W  YI+ E++                  +E+ +  +  H + W    ++  + +++  
Sbjct: 9   DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 68

Query: 71  -------------RARHIFERLVQ-CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
                         A +I+ER +      N+  +  +AD+E    + ++  ++Y   + I
Sbjct: 69  EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128

Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
                  +   +++ + KF       +     R I+K A +         +    + +  
Sbjct: 129 E----DIDPTLVYIQYMKFAR---RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY-Y 180

Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236
              D+              +E G++K     +    YI     +      R ++ER + +
Sbjct: 181 CSKDKSVA--------FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232

Query: 237 V--PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
              PP +    W R++          E + GDL     V +  F  +       E   + 
Sbjct: 233 GSLPPEKSGEIWARFLAF--------ESNIGDLASILKVEKRRFTAFREEYEGKETALLV 284

Query: 295 KKYIEMELCLGNIDPCRKLYEKYLE 319
            +Y  M+L      PC     K L 
Sbjct: 285 DRYKFMDL-----YPCSASELKALG 304

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 76.6 bits (188), Expect = 6e-16
 Identities = 34/253 (13%), Positives = 75/253 (29%), Gaps = 30/253 (11%)

Query: 127 QLFVAFAKFEE-----MGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
            ++  + ++E+            T R    Y+  L  +      D++ +   + +Q    
Sbjct: 9   DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKL 66

Query: 182 EG------IEDAIAGKMRLQYEDGVRK-NPMNYDTWFDYIRLEERVGNQERVREVYERAI 234
                        + +    YE  +      N   +F Y   EE     E+V  +Y R +
Sbjct: 67  LAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126

Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
                            ++I Y  +    A  ++  R +++         +       + 
Sbjct: 127 --------AIEDIDPTLVYIQYMKF-ARRAEGIKSGRMIFKK----AREDARTRHHVYVT 173

Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQ 354
              +E      +     K++E  L+   +       Y +    L+E    R +FE  +  
Sbjct: 174 AALMEYYCS-KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232

Query: 355 PILDLP--EFLWK 365
             L       +W 
Sbjct: 233 GSLPPEKSGEIWA 245

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 94.0 bits (232), Expect = 4e-21
 Identities = 47/394 (11%), Positives = 122/394 (30%), Gaps = 53/394 (13%)

Query: 6   RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAG---------ARQIFERWMHWMPDHEG- 55
           +   D+     P+  Q WN Y+   E+   V            R++++  +    D    
Sbjct: 171 QVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLES 230

Query: 56  -WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV 114
            W  Y +++   N++   RHI E         ++A   + D+      + R   +     
Sbjct: 231 MWQRYTQWEQDVNQLTARRHIGELS----AQYMNARSLYQDWLNITKGLKRNLPITLNQA 286

Query: 115 EIFLADDHDEAE----QLFVAFAKFEEMG----CNCKETDRARCIYKFALDRIPKGRAED 166
                   +E +     +++ + ++E        +     R   +Y  A   +    A +
Sbjct: 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC--FAPE 344

Query: 167 LYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERV 226
           ++     ++ +      +            + G +  P +    F      E       +
Sbjct: 345 IWFNMANYQGEKNTDSTVITKY-------LKLGQQCIPNSAVLAFSLSEQYELNTKIPEI 397

Query: 227 REVYERAIANVPPAEE-------------KRYWQRYIYLWINYALYKEVDAGDLERTRDV 273
                  I  +                   +   +  Y++  Y          L  +R +
Sbjct: 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT-MKRIQGLAASRKI 456

Query: 274 YRTLFIFYFSFSPRMEERRIFKKYIEMEL-CLGNIDPCRKLYEKYLEWSPENCYAWSKYT 332
           +            ++    I+ +   +E     +     K+ E  L++   +    +KY 
Sbjct: 457 FGKCR-----RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYL 511

Query: 333 ELEKSLDETERARAIFELAIAQ-PILDLPEFLWK 365
           +    ++E  + +++FE +I +     L + +++
Sbjct: 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQ 545

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 82.8 bits (203), Expect = 2e-17
 Identities = 42/379 (11%), Positives = 107/379 (28%), Gaps = 35/379 (9%)

Query: 6   RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-DHEGWLSYIKFKL 64
               + ++   P    L+   ++   +L       + F++     P     W   +  + 
Sbjct: 52  IGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEF 111

Query: 65  RYNEVQRARHIFERLVQC-----HPYNLSAWINFADFEMKMGEV--------DRARNVYE 111
              E   A  I   L +C        +LS W+++  +  K  ++        +     ++
Sbjct: 112 DKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQ 171

Query: 112 CAVEIFLADDHDEAEQLFVAFAKFEEMGCN------CKETDRARCIYKFALDRIPKGRAE 165
             V+     +   + Q +  +  F E           +     R +YK  L   P    E
Sbjct: 172 VVVDKCAIFEPK-SIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPMDCLE 229

Query: 166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQER 225
            +++++  +E+                R   E     +    +    Y          +R
Sbjct: 230 SMWQRYTQWEQDVNQLTA--------RRHIGE----LSAQYMNARSLYQDWLNITKGLKR 277

Query: 226 VREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS 285
              +           +   Y  + + +W+ +  ++  +  +L       R  +++  +  
Sbjct: 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ 337

Query: 286 PRMEERRIFKKYIEMELCLGNIDPC-RKLYEKYLEWSPENCYAWSKYTELEKSLDETERA 344
                  I+      +           K  +   +  P +       +E  +   +    
Sbjct: 338 HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEI 397

Query: 345 RAIFELAIAQPILDLPEFL 363
                  I +  LDL   +
Sbjct: 398 ETTILSCIDRIHLDLAALM 416

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 80.9 bits (198), Expect = 9e-17
 Identities = 30/306 (9%), Positives = 84/306 (27%), Gaps = 35/306 (11%)

Query: 68  EVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQ 127
           +          +++  P ++  ++      + + +  +    ++   + F          
Sbjct: 47  DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-----PLMAN 101

Query: 128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDA 187
           ++      E       +      +    L +        L+  ++ + ++  D     + 
Sbjct: 102 IWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEE 161

Query: 188 IAGKMRLQYEDGVRK----NPMNYDTWFDYIRLE---------ERVGNQERVREVYERAI 234
               +   ++  V K     P +   W +Y+            E     + +R++Y+  +
Sbjct: 162 ARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221

Query: 235 ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
              P    +  WQRY     +          +    R     L   Y +     ++    
Sbjct: 222 C-QPMDCLESMWQRYTQWEQDV---------NQLTARRHIGELSAQYMNARSLYQDWLNI 271

Query: 295 KKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS-------LDETERARAI 347
            K ++  L +           K  E+  +    W ++   E              R   +
Sbjct: 272 TKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYV 331

Query: 348 FELAIA 353
           +  A  
Sbjct: 332 YMQAAQ 337

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 79.7 bits (195), Expect = 2e-16
 Identities = 46/428 (10%), Positives = 118/428 (27%), Gaps = 89/428 (20%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENL---GNVAGARQIFE---RWMHWMPDHEG 55
                  +D++    P +  +W   + +E +     + A    +            D   
Sbjct: 82  WKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141

Query: 56  WLSYIKFKLRYNEV------------QRARHIFERLVQCHPYNLSAWINFADFEMKM--- 100
           WLSYI +  + N++            Q  + + ++     P ++  W  +  F       
Sbjct: 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201

Query: 101 ------GEVDRARNVYECAVEIFLADDH-----------------------DEAEQLFVA 131
                   V   R +Y+  +   +                           + + Q   A
Sbjct: 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNA 261

Query: 132 FAKFEEMGCNCKETDRAR--CIYKFALDRIPKGRAED-----LYRKFLAFEKQYGDREGI 184
            + +++     K   R     + +     +PK    D     ++ +++ +E    ++  +
Sbjct: 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWES--DNKLEL 319

Query: 185 EDAIAGK-MRLQYEDGVRKNPMNYDTWFDYIRLEERVGN-QERVREVYERAIANVPPAEE 242
            D +    M   Y    +      + WF+    +         + +  +     +P    
Sbjct: 320 SDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP---- 375

Query: 243 KRYWQRYIYLWINYALYKEVDAGDLERTRDVY-RTLFIFYFSFSPRMEERRIFK------ 295
                    L  + +   E     +          +   +   +  ME+    +      
Sbjct: 376 -----NSAVLAFSLSEQYE-LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQL 429

Query: 296 ---------KYIEMELCLGNIDPCRKLYEKYLEWSPENCY-AWSKYTELE-KSLDETERA 344
                     Y+     +  +   RK++ K            + +   +E     +T+ A
Sbjct: 430 KSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA 489

Query: 345 RAIFELAI 352
             + EL +
Sbjct: 490 CKVLELGL 497

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 74.7 bits (182), Expect = 1e-14
 Identities = 39/302 (12%), Positives = 96/302 (31%), Gaps = 41/302 (13%)

Query: 44  ERWMHWMPDHEGWLSYIKFKLR-------YNEVQRARHIFERLVQCHPYNLSAWINFADF 96
           +   + +     WL +I+++              R  +++ +  Q   +    W N A++
Sbjct: 293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANY 352

Query: 97  EMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL 156
           + +          Y    +  + +       L  + ++  E+     +           +
Sbjct: 353 QGEKNTDSTVITKYLKLGQQCIPNS----AVLAFSLSEQYEL---NTKIPEIETTILSCI 405

Query: 157 DRIPKGRA-------------EDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN 203
           DRI    A               L  K       Y +       +A   ++  +    K 
Sbjct: 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK 465

Query: 204 PMNYDTWFDYIRLEERV-GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV 262
            +  D + +   +E  +  + +   +V E  +       +  Y  +Y+   I        
Sbjct: 466 LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA--TDGEYINKYLDFLIYV------ 517

Query: 263 DAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP 322
              +  + + ++ +        S     + IF+K I  E  +G+++  R L +++ E  P
Sbjct: 518 --NEESQVKSLFESSID---KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572

Query: 323 EN 324
           E 
Sbjct: 573 EV 574

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 70.5 bits (171), Expect = 2e-13
 Identities = 32/269 (11%), Positives = 74/269 (27%), Gaps = 33/269 (12%)

Query: 1   FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYI 60
                           P    L  +     E    +          +             
Sbjct: 359 DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID------------ 406

Query: 61  KFKLRYNEVQRARHIFERLV-QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA 119
           +  L    +       E  + Q        +  + +   ++  +  +R ++         
Sbjct: 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC----RR 462

Query: 120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYG 179
                   +++  A  E      K+T  A  + +  L         +   K+L F     
Sbjct: 463 LKKLVTPDIYLENAYIEY--HISKDTKTACKVLELGLKYFAT--DGEYINKYLDFLIYVN 518

Query: 180 DREGIEDAIAGKMRLQYEDGVRKNPMNYDT---WFDYIRLEERVGNQERVREVYERAIAN 236
           +          +++  +E  + K   ++     +   I  E +VG+   VR + +R    
Sbjct: 519 EES--------QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570

Query: 237 VPPAEE-KRYWQRYIYLWINYALYKEVDA 264
            P   + + +  +Y  L +NY    E+D 
Sbjct: 571 FPEVNKLEEFTNKYKVLDVNYLQRLELDY 599

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Length = 679

 Score = 60.8 bits (146), Expect = 3e-10
 Identities = 18/190 (9%), Positives = 58/190 (30%), Gaps = 25/190 (13%)

Query: 193 RLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYL 252
             +  D + + P +   +   ++    +   ++V E +++     P       W   + L
Sbjct: 52  IGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMA--NIWCMRLSL 109

Query: 253 WINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNID---- 308
                   +++  D      V           +             +    +   +    
Sbjct: 110 EF-----DKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARN 164

Query: 309 PCRKLYEKYLE----WSPENCYAWSKYTELEKSLDET---------ERARAIFELAIAQP 355
              + ++  ++    + P++   W++Y    +              +  R +++  + QP
Sbjct: 165 IVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP 224

Query: 356 ILDLPEFLWK 365
           +  L E +W+
Sbjct: 225 MDCL-ESMWQ 233

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Length = 202

 Score = 52.0 bits (124), Expect = 4e-08
 Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 22/126 (17%)

Query: 191 KMRLQYEDGVRKNPMNYD----TWFDYIRLEE-------RVGNQERVREVYERAIANVPP 239
           + ++ YE  +  +  + D     + DY+               QE +R   ER +  +  
Sbjct: 10  QTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQD 69

Query: 240 AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLF---------IFYFSFSPRMEE 290
            E  R   R++ +WI Y      +  +   + + ++ +F         +FY  FS  +E 
Sbjct: 70  METYRNDPRFLKIWIWYINLFLSN--NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLEN 127

Query: 291 RRIFKK 296
            + F +
Sbjct: 128 AQFFLE 133

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 19/154 (12%), Positives = 43/154 (27%), Gaps = 2/154 (1%)

Query: 8   AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRY 66
                V   P+    W      E  +G+        +R +   P H E      + +   
Sbjct: 11  QLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ 70

Query: 67  NEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE 126
                A  + ++     P +    +         G+ + A   Y  A ++ L ++     
Sbjct: 71  QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-LPEEPYITA 129

Query: 127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP 160
           QL     +  +       + + R      +  + 
Sbjct: 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 12/93 (12%), Positives = 23/93 (24%), Gaps = 3/93 (3%)

Query: 34  GNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN 92
            +           +   P     WL     +L   +        +R +  HP +  A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 93  FADFEMKMGEVDRARNVYECAVEIFLADDHDEA 125
                        A  + + A +   A +H   
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASD--AAPEHPGI 93

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 49/393 (12%), Positives = 111/393 (28%), Gaps = 83/393 (21%)

Query: 17  PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHE-----------GWLSYIKFKLR 65
            R    W NY  +  ++G ++  +   ++  H                     + + K  
Sbjct: 91  IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCG 150

Query: 66  YNEVQRARHIFERLVQCHPYNLSAWINFAD---FEMKMGEVDRARNVYECAVEIFLADDH 122
            N+ +RA+  FE+ ++  P N       A              A +    A+ +    + 
Sbjct: 151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL----NP 206

Query: 123 DEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK------------------GRA 164
           D      +   K  +M    +E      + + AL++ P                    +A
Sbjct: 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKA 266

Query: 165 EDLYRKFLA----------------FEKQYGDREGIEDAIAGKMRLQ---------YEDG 199
            +L +K L                   K +      E+ + GK +L           +  
Sbjct: 267 IELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326

Query: 200 VRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY 259
              N   +        L       E     +++  +       K+       L + Y  +
Sbjct: 327 DEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ------LLHLRYGNF 380

Query: 260 KEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLE 319
           +       ++    +                 +I +K  E E     +   +K+ +  L 
Sbjct: 381 QLYQMKCEDKAIHHFIEGV-------------KINQKSREKEKMKDKL---QKIAKMRLS 424

Query: 320 WSPENCYAWSKYTELEKSLDETERARAIFELAI 352
            +  +  A      L++  ++ ++A    E  +
Sbjct: 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGL 457

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 41/296 (13%), Positives = 88/296 (29%), Gaps = 42/296 (14%)

Query: 81  QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE--- 137
           Q    +L  W N+A     MG +   +   +    +   +      ++       EE   
Sbjct: 88  QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC--EKFSSPYRIESPELDCEEGWT 145

Query: 138 -MGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQY 196
            + C   + +RA+  ++ AL++ PK   E      +A   +  +    ++AI        
Sbjct: 146 RLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIAS-YRLDNWPPSQNAID-----PL 198

Query: 197 EDGVRKNPMNYDTWFD----YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYL 252
              +R NP N            ++ E    +    ++ E A+   P             +
Sbjct: 199 RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP---------GVTDV 249

Query: 253 WINYALYKEVDAGDLER--------------TRDVYRTLFIFYFSFSPRMEERRIFKKYI 298
             + A +      + ++                 ++  +   Y +   ++   R      
Sbjct: 250 LRSAAKFYR-RKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR-ENGMY 307

Query: 299 EMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQ 354
                L  I       +K  E +       S    L    D+ E A   F+   ++
Sbjct: 308 GKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 47/387 (12%), Positives = 106/387 (27%), Gaps = 124/387 (32%)

Query: 19  VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNE-------VQR 71
           ++ L     +++ N  + +      +  +H +   +  L  +     Y         VQ 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYENCLLVLLNVQN 255

Query: 72  ARHI--FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF 129
           A+    F   + C     + +    DF      +  A   +       +    DE + L 
Sbjct: 256 AKAWNAFN--LSCKILLTTRFKQVTDF------LSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIA 189
               K+  + C  ++  R        L   P                          +I 
Sbjct: 308 ---LKY--LDCRPQDLPRE------VLTTNP-----------RRL------------SII 333

Query: 190 GKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKR-YWQR 248
            +        +R     +D W           N +++  + E ++  + PAE ++ + + 
Sbjct: 334 AES-------IRDGLATWDNWKHV--------NCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 249 YIY-------------LWINYALYKEVD--------AGDLERTRDVYR-TLFIFYFSFSP 286
            ++             +W +  +  +V            +E+       ++   Y     
Sbjct: 379 SVFPPSAHIPTILLSLIWFD-VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 287 RMEE-----RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKY-----TELEK 336
           ++E      R I   Y          +  +      L     + Y +  +       +E 
Sbjct: 438 KLENEYALHRSIVDHY----------NIPKTFDSDDLIPPYLDQY-FYSHIGHHLKNIEH 486

Query: 337 SLDETERARAIFELAIAQPILDLPEFL 363
             +     R +F        LD   FL
Sbjct: 487 P-ERMTLFRMVF--------LDF-RFL 503

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 35/242 (14%), Positives = 81/242 (33%), Gaps = 16/242 (6%)

Query: 15  LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGW---LSYIKFKLRYNEVQR 71
             P      NN   ++   GN+  A +++ + +   P+       L+ +  +    ++Q 
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ--GKLQE 61

Query: 72  ARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVA 131
           A   ++  ++  P    A+ N  +   +M +V  A   Y  A++I    +   A+     
Sbjct: 62  ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI----NPAFADAHSNL 117

Query: 132 FAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGK 191
            +  ++ G        A   Y+ AL   P    +         +    D    ++ +  K
Sbjct: 118 ASIHKDSG----NIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIV-CDWTDYDERMK-K 170

Query: 192 MRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIY 251
           +     D + KN +        +      G ++ + E +     +      K  ++    
Sbjct: 171 LVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKD 230

Query: 252 LW 253
           L 
Sbjct: 231 LK 232

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 3/119 (2%)

Query: 8   AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRY 66
            + + + + P      +N   + +  G +  A   ++  +   P   + + +        
Sbjct: 31  LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 90

Query: 67  NEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA 125
            +VQ A   + R +Q +P    A  N A      G +  A   Y  A  + L  D  +A
Sbjct: 91  QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTA--LKLKPDFPDA 147

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 21  QLWNNYIRMEENLGNVAGARQIFERWMHWMPDH---EGWLSYIKFKLRYNEVQRARHIFE 77
           +     +++   L  +  AR+  ++      D    +   +++       ++Q A +IF+
Sbjct: 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQ 190

Query: 78  RLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
            +       L      A   M  G  + A  V + A++ 
Sbjct: 191 EMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 4/121 (3%)

Query: 7   NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSY-IKFKL 64
                V+   P        +I     L        +  + +   P +   W +    + +
Sbjct: 43  KLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102

Query: 65  RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDE 124
             ++ + AR    +          AWI +        E D+A   Y  A ++        
Sbjct: 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHL 160

Query: 125 A 125
            
Sbjct: 161 P 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	365
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	100.0
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.98
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.98
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.97
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.96
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.96
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.95
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.95
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.95
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.95
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.94
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.94
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.94
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.94
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.94
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.94
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.93
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.93
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.93
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.93
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.92
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.92
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.92
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.92
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.91
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.9
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.9
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.89
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.89
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.89
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.88
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.88
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.88
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.88
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.87
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.87
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.86
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.86
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.86
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.85
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.85
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.84
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.84
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.84
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.84
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.83
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.83
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.83
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.83
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.83
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.82
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.82
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.82
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.81
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.79
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.79
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.79
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.78
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.78
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.77
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.77
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.76
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.76
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.75
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.74
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.74
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.73
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.73
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.73
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.72
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.72
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.72
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.71
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.7
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.68
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.68
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.68
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.67
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.67
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.65
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.65
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.63
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.63
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.62
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.62
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	99.62
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.62
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.6
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.59
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.59
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.59
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.59
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.59
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.57
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.57
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.56
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.56
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.55
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.54
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.54
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.54
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.53
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.53
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.52
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.52
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.51
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.51
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.5
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.5
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.5
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.49
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.49
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.49
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.49
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.49
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.49
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.48
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.47
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.47
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.47
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.45
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.45
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.43
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.43
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.42
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.41
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.4
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.4
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.39
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.39
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.39
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.37
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.37
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.37
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.36
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.33
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.31
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.3
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	99.26
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.25
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.24
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.24
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.22
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.14
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.11
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.06
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	99.05
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.03
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.03
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.91
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.9
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.9
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.89
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.89
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.82
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.78
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.76
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.71
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.6
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.53
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.42
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.41
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.35
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.34
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.2
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.06
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.04
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.82
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	97.73
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	97.5
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	97.4
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.37
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	97.36
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.36
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.34
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.33
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.29
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	97.28
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.25
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	97.25
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	97.22
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.12
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.08
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	96.95
4aez_C	223	MAD3, mitotic spindle checkpoint component MAD3; c	96.91
2wvi_A	164	Mitotic checkpoint serine/threonine-protein kinase	96.87
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.73
4aez_C	223	MAD3, mitotic spindle checkpoint component MAD3; c	96.62
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.59
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.44
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.16
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	96.1
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.79
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.63
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	95.41
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.36
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.16
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.97
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.87
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.69
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.98
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.72
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	93.58
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.32
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.86
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.77
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	87.52
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	86.53
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.59
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	83.06

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.7e-40  Score=286.16  Aligned_cols=326  Identities=15%  Similarity=0.147  Sum_probs=200.5

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      +++|...|+++++.+|+++.++..++.++...|++++|...++++++.+|. ..+|..++.++...|++++|+..|++++
T Consensus        15 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   94 (388)
T 1w3b_A           15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL   94 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455555555555555555555555555555555555555555555555555 4555555555555555555555555555


Q ss_pred             HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      ..+|+++..|..+|.++...|++++|+..|+++++. .|+.    ..++..++.++.   ..|++++|+..|+++++..|
T Consensus        95 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p  166 (388)
T 1w3b_A           95 RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-NPDL----YCVRSDLGNLLK---ALGRLEEAKACYLKAIETQP  166 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-CTTC----THHHHHHHHHHH---TTSCHHHHHHHHHHHHHHCT
T ss_pred             HcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCC
Confidence            555555555555555555555555555555555555 5544    444444555444   44555555555554444444


Q ss_pred             Cch--------------------------------hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH
Q 036703          161 KGR--------------------------------AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD  208 (365)
Q Consensus       161 ~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~  208 (365)
                      ...                                ....+..++..+...|+.+        +|+..|++++..+|++..
T Consensus       167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~--------~A~~~~~~al~~~p~~~~  238 (388)
T 1w3b_A          167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD--------RAVAAYLRALSLSPNHAV  238 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT--------HHHHHHHHHHHHCTTCHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCcCCHH
Confidence            431                                0334444444444444433        466666666666666666


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc
Q 036703          209 TWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM  288 (365)
Q Consensus       209 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~  288 (365)
                      ++..++.++...|++++|+..|+++++..|.++.         ++..++..+ ...|++++|+..|+++++..       
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~-~~~g~~~~A~~~~~~al~~~-------  301 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---------AYCNLANAL-KEKGSVAEAEDCYNTALRLC-------  301 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH---------HHHHHHHHH-HHHSCHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHH-HHcCCHHHHHHHHHHHHhhC-------
Confidence            6666666666666666666666666666666532         556666665 46677777777777777765       


Q ss_pred             hh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703          289 EE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE  361 (365)
Q Consensus       289 ~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~  361 (365)
                      |+ +..+..++.++...|++++|...|+++++.+|++..++..++.++...|++++|...|+++++..| +.++
T Consensus       302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~  374 (388)
T 1w3b_A          302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFAD  374 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHH
Confidence            33 566777777777777777777777777777777777777777777777888888888887777777 4443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.1e-39  Score=280.97  Aligned_cols=306  Identities=15%  Similarity=0.158  Sum_probs=241.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcch
Q 036703           25 NYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEV  103 (365)
Q Consensus        25 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  103 (365)
                      .+|..+.+.|++++|+..++++++.+|+ ...+..++.++...|++++|...+++++..+|.++.+|..+|.++...|++
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence            4678889999999999999999999999 788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchh
Q 036703          104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG  183 (365)
Q Consensus       104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  183 (365)
                      ++|+..|+++++. .|++    ...|..++.++.   ..|++++|+..|+++++..|..  ...+..++.++...|+.+ 
T Consensus        84 ~~A~~~~~~al~~-~p~~----~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~g~~~-  152 (388)
T 1w3b_A           84 QEAIEHYRHALRL-KPDF----IDGYINLAAALV---AAGDMEGAVQAYVSALQYNPDL--YCVRSDLGNLLKALGRLE-  152 (388)
T ss_dssp             HHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHSCSSHHHHHHHHHHHHCTTC--THHHHHHHHHHHTTSCHH-
T ss_pred             HHHHHHHHHHHHc-Ccch----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHccCHH-
Confidence            9999999999999 9988    899999999999   9999999999999999999986  567888888888888865 


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhH------------------
Q 036703          184 IEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRY------------------  245 (365)
Q Consensus       184 ~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~------------------  245 (365)
                             +|...|++++..+|++..+|..+|.++...|++++|+..|+++++..|.+.....                  
T Consensus       153 -------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~  225 (388)
T 1w3b_A          153 -------EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA  225 (388)
T ss_dssp             -------HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             -------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence                   5667777777777777777777777777777777777777777766666532100                  


Q ss_pred             HH-------HhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHH
Q 036703          246 WQ-------RYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKY  317 (365)
Q Consensus       246 ~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a  317 (365)
                      +.       ....++..++..+ ...|++++|+..|++++...       |+ +..+..++.++...|++++|...|+++
T Consensus       226 ~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  297 (388)
T 1w3b_A          226 YLRALSLSPNHAVVHGNLACVY-YEQGLIDLAIDTYRRAIELQ-------PHFPDAYCNLANALKEKGSVAEAEDCYNTA  297 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTC-------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHhhCcCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            00       0012444455554 35566666666666666655       33 556677777777777777777777777


Q ss_pred             HhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          318 LEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       318 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      ++.+|+++.++..++.++...|++++|...|+++++..|
T Consensus       298 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  336 (388)
T 1w3b_A          298 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP  336 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred             HhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            777777777777777777777777777777777777666

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=4.9e-36  Score=263.34  Aligned_cols=331  Identities=12%  Similarity=0.017  Sum_probs=284.5

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 036703            4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQC   82 (365)
Q Consensus         4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~   82 (365)
                      .+...+.+++..+|+++..|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++++.
T Consensus        10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            4566788899999999999999999999999999999999999999998 889999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH---HHHHHH------------HHHHHhccccchhHH
Q 036703           83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE---QLFVAF------------AKFEEMGCNCKETDR  147 (365)
Q Consensus        83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~------------~~~~~~~~~~~~~~~  147 (365)
                      +|+++.++..+|.++...|++++|+..|+++++. .|.+    .   ..|..+            |..+.   ..|++++
T Consensus        90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~---~~~~~~~  161 (450)
T 2y4t_A           90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-NPSE----NEEKEAQSQLIKSDEMQRLRSQALNAF---GSGDYTA  161 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCC----hhhHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHH
Confidence            9999999999999999999999999999999999 8876    5   565554            55688   9999999


Q ss_pred             HHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHH
Q 036703          148 ARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR  227 (365)
Q Consensus       148 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~  227 (365)
                      |+..|+++++..|.+  ..++..++.++...|+.+        +|+..|+++++.+|+++.+|..++.++...|++++|+
T Consensus       162 A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  231 (450)
T 2y4t_A          162 AIAFLDKILEVCVWD--AELRELRAECFIKEGEPR--------KAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL  231 (450)
T ss_dssp             HHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCGG--------GGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCCCC--hHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999886  678888999999999876        6999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCchhhhHHHH---hHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHH
Q 036703          228 EVYERAIANVPPAEEKRYWQR---YIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMEL  302 (365)
Q Consensus       228 ~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~  302 (365)
                      ..|++++...|.+......-.   .+......+..+ ...|++++|+..|++++...|..    |.  ...+..++.++.
T Consensus       232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~l~~~~~  306 (450)
T 2y4t_A          232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL-IRDGRYTDATSKYESVMKTEPSI----AEYTVRSKERICHCFS  306 (450)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCCSS----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHHHH
Confidence            999999999998864210000   001112336666 58899999999999999988543    32  557889999999


Q ss_pred             HhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCC
Q 036703          303 CLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL  357 (365)
Q Consensus       303 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  357 (365)
                      +.|++++|...++++++.+|+++.+|..++.++...|++++|...|+++++..|.
T Consensus       307 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  361 (450)
T 2y4t_A          307 KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN  361 (450)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999999999999999999999999999999999999994

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=1.3e-35  Score=260.54  Aligned_cols=329  Identities=14%  Similarity=0.072  Sum_probs=297.6

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++
T Consensus        41 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  120 (450)
T 2y4t_A           41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV  120 (450)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHhCCcch---HHHHHH------------HHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703           80 VQCHPYNL---SAWINF------------ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE  144 (365)
Q Consensus        80 l~~~p~~~---~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (365)
                      +..+|++.   ..|..+            |..+...|++++|+..|+++++. .|.+    ..++..++.++.   ..|+
T Consensus       121 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~---~~g~  192 (450)
T 2y4t_A          121 LKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWD----AELRELRAECFI---KEGE  192 (450)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTC
T ss_pred             HhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----hHHHHHHHHHHH---HCCC
Confidence            99999888   777666            55699999999999999999999 9888    999999999999   9999


Q ss_pred             hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----------
Q 036703          145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDY-----------  213 (365)
Q Consensus       145 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~-----------  213 (365)
                      +++|+..|+++++..|.+  ...|..++.++...|+.+        +|+..|++++..+|++...+..+           
T Consensus       193 ~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  262 (450)
T 2y4t_A          193 PRKAISDLKAASKLKNDN--TEAFYKISTLYYQLGDHE--------LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE  262 (450)
T ss_dssp             GGGGHHHHHHHHHHHCSC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence            999999999999998876  678999999999999865        79999999999999999888776           


Q ss_pred             -HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-H
Q 036703          214 -IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-R  291 (365)
Q Consensus       214 -~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~  291 (365)
                       +..+...|++++|...|++++...|.++..     ...++..++.++ ...|++++|+..+++++...       |+ +
T Consensus       263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-----~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~-------p~~~  329 (450)
T 2y4t_A          263 SAEELIRDGRYTDATSKYESVMKTEPSIAEY-----TVRSKERICHCF-SKDEKPVEAIRVCSEVLQME-------PDNV  329 (450)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCSSHHH-----HHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchHH-----HHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhC-------cccH
Confidence             889999999999999999999999987531     123667778887 59999999999999999987       54 7


Q ss_pred             HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHH------------HHHhhcc-----chhHHHHHHHH-Hhc
Q 036703          292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYT------------ELEKSLD-----ETERARAIFEL-AIA  353 (365)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~------------~~~~~~g-----~~~~A~~~~~~-a~~  353 (365)
                      .+|..+|.++...|++++|...|+++++.+|++..++..++            .++...|     +.+++++.|++ +++
T Consensus       330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~  409 (450)
T 2y4t_A          330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ  409 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999            4455555     56788999987 888


Q ss_pred             CcCCCCC
Q 036703          354 QPILDLP  360 (365)
Q Consensus       354 ~~~~~~p  360 (365)
                      ..|...|
T Consensus       410 ~~pd~~~  416 (450)
T 2y4t_A          410 WHPDNFQ  416 (450)
T ss_dssp             SCGGGCC
T ss_pred             hCCCCCC
Confidence            8886555

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.6e-36  Score=273.54  Aligned_cols=331  Identities=10%  Similarity=0.051  Sum_probs=302.4

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHH--------------------------------------HHHhcCChhHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIR--------------------------------------MEENLGNVAGARQI   42 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~--------------------------------------~~~~~g~~~~A~~~   42 (365)
                      ++++|+..|+++++.+|++..+|..++.                                      .+.+.|++++|+.+
T Consensus       215 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~  294 (597)
T 2xpi_A          215 NFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY  294 (597)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence            4789999999999999999998887754                                      33367889999999


Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCCh
Q 036703           43 FERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH  122 (365)
Q Consensus        43 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  122 (365)
                      |+++++..++...|..++..+...|++++|..+|++++..+|++..++..++.++...|++++|..+++++++. .|.+ 
T Consensus       295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-  372 (597)
T 2xpi_A          295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEK-  372 (597)
T ss_dssp             HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTS-
T ss_pred             HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Cccc-
Confidence            99999885568999999999999999999999999999999999999999999999999999999999999999 8888 


Q ss_pred             hhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703          123 DEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK  202 (365)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~  202 (365)
                         ..+|..++.++.   ..|++++|+.+|+++++..|.+  ...|..++..+...|+.+        +|+..|++++..
T Consensus       373 ---~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~  436 (597)
T 2xpi_A          373 ---AVTWLAVGIYYL---CVNKISEARRYFSKSSTMDPQF--GPAWIGFAHSFAIEGEHD--------QAISAYTTAARL  436 (597)
T ss_dssp             ---HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHHH---HhccHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHh
Confidence               999999999999   9999999999999999988876  678999999999999866        799999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc
Q 036703          203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF  282 (365)
Q Consensus       203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~  282 (365)
                      .|++..+|..++.++...|++++|...|+++++..|.++.         .|..++..+ ...|++++|+..|+++++..|
T Consensus       437 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~  506 (597)
T 2xpi_A          437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL---------LLNELGVVA-FNKSDMQTAINHFQNALLLVK  506 (597)
T ss_dssp             TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHH-HHhCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999998753         788888887 599999999999999999854


Q ss_pred             cCCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCC
Q 036703          283 SFSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLP  360 (365)
Q Consensus       283 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p  360 (365)
                      ..... |+  ..+|..++.++.+.|++++|.+.|+++++.+|+++.+|..++.++...|++++|...|+++++.+| +.|
T Consensus       507 ~~~~~-p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~  584 (597)
T 2xpi_A          507 KTQSN-EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-NEI  584 (597)
T ss_dssp             HSCCC-SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred             ccccc-hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCh
Confidence            32211 55  789999999999999999999999999999999999999999999999999999999999999999 444


Q ss_pred             c
Q 036703          361 E  361 (365)
Q Consensus       361 ~  361 (365)
                      +
T Consensus       585 ~  585 (597)
T 2xpi_A          585 M  585 (597)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=1e-34  Score=247.06  Aligned_cols=316  Identities=12%  Similarity=0.026  Sum_probs=282.2

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703           19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE   97 (365)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~   97 (365)
                      ++..|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++++.+|+++.++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            5788999999999999999999999999999999 889999999999999999999999999999999999999999999


Q ss_pred             HhhcchHHHHHHHHHHHhhhhc---CChhhHHHHHHHH------------HHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703           98 MKMGEVDRARNVYECAVEIFLA---DDHDEAEQLFVAF------------AKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus        98 ~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      ...|++++|+..|+++++. .|   .+    ..++..+            +.++.   ..|++++|+..|+++++..|.+
T Consensus        82 ~~~~~~~~A~~~~~~~~~~-~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~~~~~  153 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKS-NPSEQEE----KEAESQLVKADEMQRLRSQALDAF---DGADYTAAITFLDKILEVCVWD  153 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTS-CCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHcCChHHHHHHHHHHHhc-CCcccCh----HHHHHHHHHHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999999 88   55    6676666            68888   9999999999999999999986


Q ss_pred             hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703          163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                        ..++..++.++...|+.+        .|+..++++++..|.++.++..+|.++...|++++|...|+++++..|.+..
T Consensus       154 --~~~~~~~~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  223 (359)
T 3ieg_A          154 --AELRELRAECFIKEGEPR--------KAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR  223 (359)
T ss_dssp             --HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             --hHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH
Confidence              678888999999999866        6999999999999999999999999999999999999999999999999864


Q ss_pred             hhHHH-H--hHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHH
Q 036703          243 KRYWQ-R--YIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKY  317 (365)
Q Consensus       243 ~~~~~-~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~a  317 (365)
                      ...+- .  .+......+..+ ...|++++|+..+++++...|..    +.  ...+..+|.++...|++++|...|+++
T Consensus       224 ~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  298 (359)
T 3ieg_A          224 CFAHYKQVKKLNKLIESAEEL-IRDGRYTDATSKYESVMKTEPSV----AEYTVRSKERICHCFSKDEKPVEAIRICSEV  298 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCSS----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            21100 0  001122346665 58999999999999999998553    22  356778899999999999999999999


Q ss_pred             HhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCC
Q 036703          318 LEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL  357 (365)
Q Consensus       318 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  357 (365)
                      ++.+|+++.+|..++.++...|++++|...|+++++.+|.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~  338 (359)
T 3ieg_A          299 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN  338 (359)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999993

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=2.3e-34  Score=244.85  Aligned_cols=309  Identities=13%  Similarity=0.069  Sum_probs=282.6

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   97 (359)
T 3ieg_A           18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV   97 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999998 789999999999999999999999999


Q ss_pred             HHhCC---cchHHHHHH------------HHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703           80 VQCHP---YNLSAWINF------------ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE  144 (365)
Q Consensus        80 l~~~p---~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (365)
                      ++.+|   +++..+..+            |.++...|++++|+..++++++. .|.+    +.++..++.++.   ..|+
T Consensus        98 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~~~~~~~---~~~~  169 (359)
T 3ieg_A           98 LKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-CVWD----AELRELRAECFI---KEGE  169 (359)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTC
T ss_pred             HhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCc----hHHHHHHHHHHH---HCCC
Confidence            99999   899888887            68899999999999999999999 9988    999999999999   9999


Q ss_pred             hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----------
Q 036703          145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDY-----------  213 (365)
Q Consensus       145 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~-----------  213 (365)
                      +++|+..++++++..|.+  ...+..++.++...|+.+        +|...|+++++.+|++..++..+           
T Consensus       170 ~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~--------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  239 (359)
T 3ieg_A          170 PRKAISDLKAASKLKSDN--TEAFYKISTLYYQLGDHE--------LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE  239 (359)
T ss_dssp             HHHHHHHHHHHHTTCSCC--HHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999887  678888999998999865        79999999999999998876544           


Q ss_pred             -HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-H
Q 036703          214 -IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-R  291 (365)
Q Consensus       214 -~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~  291 (365)
                       +.++...|++++|...|++++...|.++..     ...++..++..+ ...|++++|+..|+++++..       |+ +
T Consensus       240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~-------~~~~  306 (359)
T 3ieg_A          240 SAEELIRDGRYTDATSKYESVMKTEPSVAEY-----TVRSKERICHCF-SKDEKPVEAIRICSEVLQME-------PDNV  306 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHH-----HHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCchHH-----HHHHHHHHHHHH-HHccCHHHHHHHHHHHHHhC-------cccH
Confidence             777899999999999999999999997531     123566678777 58999999999999999987       54 7


Q ss_pred             HHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccc
Q 036703          292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDE  340 (365)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  340 (365)
                      .++..+|.++...|++++|...|+++++.+|++..++..++.+....++
T Consensus       307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999988776553

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=4.9e-35  Score=262.69  Aligned_cols=328  Identities=12%  Similarity=0.096  Sum_probs=281.0

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHH---
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIF---   76 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~---   76 (365)
                      ++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|   
T Consensus        40 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  119 (537)
T 3fp2_A           40 NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL  119 (537)
T ss_dssp             CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4788999999999999999999999999999999999999999999999999 788999998888877777766544   


Q ss_pred             --------------------------------------------------------------------------------
Q 036703           77 --------------------------------------------------------------------------------   76 (365)
Q Consensus        77 --------------------------------------------------------------------------------   76 (365)
                                                                                                      
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (537)
T 3fp2_A          120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDA  199 (537)
T ss_dssp             C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHH
T ss_pred             hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------HHHHHhCCcchH-------HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh
Q 036703           77 --------------------------ERLVQCHPYNLS-------AWINFADFEMKMGEVDRARNVYECAVEIFLADDHD  123 (365)
Q Consensus        77 --------------------------~~~l~~~p~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  123 (365)
                                                +++++.+|+++.       ++..+|.++...|++++|+..|+++++. .|.   
T Consensus       200 l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~~~---  275 (537)
T 3fp2_A          200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL-HPT---  275 (537)
T ss_dssp             HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCC---
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CCC---
Confidence                                      344455665544       4666677788888889999999999888 664   


Q ss_pred             hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC
Q 036703          124 EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN  203 (365)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~  203 (365)
                        ..++..+|.++.   ..|++++|+..|+++++..|..  ..++..++.++...|+++        +|+..|++++..+
T Consensus       276 --~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~~  340 (537)
T 3fp2_A          276 --PNSYIFLALTLA---DKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYFILQDYK--------NAKEDFQKAQSLN  340 (537)
T ss_dssp             --HHHHHHHHHHTC---CSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHC
T ss_pred             --chHHHHHHHHHH---HhcCHHHHHHHHHHHhccCCCC--HHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhC
Confidence              678888899998   9999999999999999988876  577888888888888865        6999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcccc
Q 036703          204 PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS  283 (365)
Q Consensus       204 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~  283 (365)
                      |++..+|..++.++...|++++|...|+++++..|.+..         ++..++.++ ...|++++|+..|+++++..|.
T Consensus       341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE---------VPTFFAEIL-TDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---------HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHH-HHhCCHHHHHHHHHHHHHcCCc
Confidence            999999999999999999999999999999999998854         777788887 5899999999999999999876


Q ss_pred             CCCcchhHHHHHHHHHHHHHh----------CCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703          284 FSPRMEERRIFKKYIEMELCL----------GNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA  353 (365)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  353 (365)
                      ....+.....+...+.++...          |++++|...|+++++.+|+++.++..++.++...|++++|...|+++++
T Consensus       411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            655432344466778888888          9999999999999999999999999999999999999999999999999


Q ss_pred             CcCC
Q 036703          354 QPIL  357 (365)
Q Consensus       354 ~~~~  357 (365)
                      ..|.
T Consensus       491 ~~~~  494 (537)
T 3fp2_A          491 LART  494 (537)
T ss_dssp             HC--
T ss_pred             hCCC
Confidence            9883

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=100.00  E-value=4.7e-34  Score=255.56  Aligned_cols=331  Identities=18%  Similarity=0.303  Sum_probs=264.9

Q ss_pred             HHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Q 036703            8 AWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN   86 (365)
Q Consensus         8 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~   86 (365)
                      +|+++++.+|.+..+|..++.. .+.|++++|+.+|+++++.+|. ..+|..++.++.+.|++++|+.+|++++..+| +
T Consensus         1 ~le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~   78 (530)
T 2ooe_A            1 MAEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-H   78 (530)
T ss_dssp             CHHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-C
T ss_pred             ChhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C
Confidence            4789999999999999999995 7899999999999999999999 89999999999999999999999999999999 7


Q ss_pred             hHHHHHHHHHHH-hhcchHHHHH----HHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc---------cchhHHHHHHH
Q 036703           87 LSAWINFADFEM-KMGEVDRARN----VYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN---------CKETDRARCIY  152 (365)
Q Consensus        87 ~~~~~~~~~~~~-~~~~~~~A~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~  152 (365)
                      ..+|..++.+.. ..|+.+.|++    +|++++.. .+.+ +.+..+|..++.++.   .         .|++++|+.+|
T Consensus        79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~-~g~~-~~~~~~w~~~~~~~~---~~~~~~~~~~~~~~~~a~~~y  153 (530)
T 2ooe_A           79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK-IGME-IMSYQIWVDYINFLK---GVEAVGSYAENQRITAVRRVY  153 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH-TTTS-TTCHHHHHHHHHHHH---HSCCCSSTTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH-CCCC-cccHHHHHHHHHHHh---cCCCcccHHHHhHHHHHHHHH
Confidence            889999997654 4677777665    88888887 5543 344899999999987   6         79999999999


Q ss_pred             HHHhccCCCchhHHHHHHHHHHHHHcCC--------------------------------------c-h---------hh
Q 036703          153 KFALDRIPKGRAEDLYRKFLAFEKQYGD--------------------------------------R-E---------GI  184 (365)
Q Consensus       153 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~--------------------------------------~-~---------~~  184 (365)
                      +++++ .|......+|..+..++...|.                                      + .         .+
T Consensus       154 ~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~  232 (530)
T 2ooe_A          154 QRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM  232 (530)
T ss_dssp             HHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred             HHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence            99999 5765445667666554322110                                      0 0         00


Q ss_pred             hH-----------------HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------hCCHH-------HHHHHHHHH
Q 036703          185 ED-----------------AIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER-------VGNQE-------RVREVYERA  233 (365)
Q Consensus       185 ~~-----------------~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~-------~~~~~-------~A~~~~~~~  233 (365)
                      -.                 ....+++..|++++..+|.++.+|..++.++..       .|+++       +|+.+|+++
T Consensus       233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A  312 (530)
T 2ooe_A          233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA  312 (530)
T ss_dssp             HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence            00                 001256679999999999999999999999876       69887       999999999


Q ss_pred             Hh-cCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC-Ccc-----------------------
Q 036703          234 IA-NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS-PRM-----------------------  288 (365)
Q Consensus       234 ~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~-~~~-----------------------  288 (365)
                      ++ .+|.+.         .+|..++.++ ...|++++|+.+|+++++..|... .+|                       
T Consensus       313 l~~~~p~~~---------~l~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A  382 (530)
T 2ooe_A          313 ISTLLKKNM---------LLYFAYADYE-ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA  382 (530)
T ss_dssp             TTTTCSSCH---------HHHHHHHHHH-HHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcccH---------HHHHHHHHHH-HhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            98 688874         3888888887 478888888888888888765431 223                       


Q ss_pred             ----hh-HHHHHHHHHHH-HHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          289 ----EE-RRIFKKYIEME-LCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       289 ----~~-~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                          |. ..++...+.++ ...|++++|+.+|+++++.+|+++.+|..++.++...|+.++|+.+|++++...|
T Consensus       383 l~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~  456 (530)
T 2ooe_A          383 REDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  456 (530)
T ss_dssp             HTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred             HhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence                11 12222223332 2478899999999999999999999999999999999999999999999999876

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-33  Score=251.70  Aligned_cols=324  Identities=12%  Similarity=0.098  Sum_probs=286.7

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|+..|++++..+|+ +.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++
T Consensus        21 ~~~~A~~~~~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~   99 (514)
T 2gw1_A           21 KYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL   99 (514)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCcc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            578999999999999995 899999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHhCCcc-------------------------------------------------------------------------
Q 036703           80 VQCHPYN-------------------------------------------------------------------------   86 (365)
Q Consensus        80 l~~~p~~-------------------------------------------------------------------------   86 (365)
                      +...|.+                                                                         
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (514)
T 2gw1_A          100 SLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN  179 (514)
T ss_dssp             HHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSS
T ss_pred             HhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHH
Confidence            9887632                                                                         


Q ss_pred             ------hHHHHHHHHHHHh---hcchHHHHHHHHHHHhhh------hcCC---hhhHHHHHHHHHHHHHhccccchhHHH
Q 036703           87 ------LSAWINFADFEMK---MGEVDRARNVYECAVEIF------LADD---HDEAEQLFVAFAKFEEMGCNCKETDRA  148 (365)
Q Consensus        87 ------~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A  148 (365)
                            ...+...+..+..   .|++++|+..|+++++..      .|.+   .+....++..+|.++.   ..|++++|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~A  256 (514)
T 2gw1_A          180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF---LKNDPLGA  256 (514)
T ss_dssp             CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH---HSSCHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH---HCCCHHHH
Confidence                  5666777777665   899999999999999830      1221   1445889999999999   99999999


Q ss_pred             HHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 036703          149 RCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVRE  228 (365)
Q Consensus       149 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~  228 (365)
                      +..|+++++..|.   ...+..++..+...|+.+        .|+..|++++..+|.+..++..++.++...|++++|..
T Consensus       257 ~~~~~~~l~~~~~---~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  325 (514)
T 2gw1_A          257 HEDIKKAIELFPR---VNSYIYMALIMADRNDST--------EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK  325 (514)
T ss_dssp             HHHHHHHHHHCCC---HHHHHHHHHHHHTSSCCT--------TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HHHHHHHHhhCcc---HHHHHHHHHHHHHCCCHH--------HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            9999999999887   678888899998999876        58999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCC
Q 036703          229 VYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNI  307 (365)
Q Consensus       229 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  307 (365)
                      .|+++++..|.+..         .+..++..+ ...|++++|+..++++++..       |+ +..+..+|.++...|++
T Consensus       326 ~~~~~~~~~~~~~~---------~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~  388 (514)
T 2gw1_A          326 DFDKAKELDPENIF---------PYIQLACLA-YRENKFDDCETLFSEAKRKF-------PEAPEVPNFFAEILTDKNDF  388 (514)
T ss_dssp             HHHHHHHTCSSCSH---------HHHHHHHHT-TTTTCHHHHHHHHHHHHHHS-------TTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhChhhHH---------HHHHHHHHH-HHcCCHHHHHHHHHHHHHHc-------ccCHHHHHHHHHHHHHCCCH
Confidence            99999999998753         777788887 58999999999999999887       43 66788899999999999


Q ss_pred             ccHHHHHHHHHhhCcchHH------HHHHHHHHHhh---ccchhHHHHHHHHHhcCcC
Q 036703          308 DPCRKLYEKYLEWSPENCY------AWSKYTELEKS---LDETERARAIFELAIAQPI  356 (365)
Q Consensus       308 ~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~---~g~~~~A~~~~~~a~~~~~  356 (365)
                      ++|...|++++...|++..      ++..++.++..   .|++++|...|+++++..|
T Consensus       389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~  446 (514)
T 2gw1_A          389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP  446 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence            9999999999999888754      89999999999   9999999999999998887

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=252.28  Aligned_cols=331  Identities=12%  Similarity=0.076  Sum_probs=295.0

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----------------------------
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----------------------------   52 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----------------------------   52 (365)
                      ++++|+..|+++++.+|++..+|..+|.++...|++++|+..|++++...|.                            
T Consensus        54 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  133 (514)
T 2gw1_A           54 DLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDI  133 (514)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----
T ss_pred             hHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999988863                            


Q ss_pred             ----------------------------------------------------hHHHHHHHHHHHH---hccHHHHHHHHH
Q 036703           53 ----------------------------------------------------HEGWLSYIKFKLR---YNEVQRARHIFE   77 (365)
Q Consensus        53 ----------------------------------------------------~~~~~~~~~~~~~---~~~~~~A~~~~~   77 (365)
                                                                          ...|...+.....   .|++++|+..|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  213 (514)
T 2gw1_A          134 DTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT  213 (514)
T ss_dssp             -----------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred             HHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence                                                                2344555555554   899999999999


Q ss_pred             HHHH-----h---------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703           78 RLVQ-----C---------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK  143 (365)
Q Consensus        78 ~~l~-----~---------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (365)
                      +++.     .         .|.++.++..+|.++...|++++|+..|+++++. .|.     ..++..++.++.   ..|
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~~~-----~~~~~~l~~~~~---~~~  284 (514)
T 2gw1_A          214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-FPR-----VNSYIYMALIMA---DRN  284 (514)
T ss_dssp             HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-CCC-----HHHHHHHHHHHH---TSS
T ss_pred             HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-Ccc-----HHHHHHHHHHHH---HCC
Confidence            9999     5         3556789999999999999999999999999999 654     788999999999   999


Q ss_pred             hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCH
Q 036703          144 ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQ  223 (365)
Q Consensus       144 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  223 (365)
                      ++++|+..|+++++..|.+  ...+..++.++...|+.+        +|+..|++++..+|.+..++..++.++...|++
T Consensus       285 ~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  354 (514)
T 2gw1_A          285 DSTEYYNYFDKALKLDSNN--SSVYYHRGQMNFILQNYD--------QAGKDFDKAKELDPENIFPYIQLACLAYRENKF  354 (514)
T ss_dssp             CCTTGGGHHHHHHTTCTTC--THHHHHHHHHHHHTTCTT--------HHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCH
T ss_pred             CHHHHHHHHHHHhhcCcCC--HHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCH
Confidence            9999999999999999886  568888899999999876        699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH
Q 036703          224 ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC  303 (365)
Q Consensus       224 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (365)
                      ++|...|+++++..|.+..         ++..++..+ ...|++++|+..|++++...|...........+..+|.++..
T Consensus       355 ~~A~~~~~~~~~~~~~~~~---------~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  424 (514)
T 2gw1_A          355 DDCETLFSEAKRKFPEAPE---------VPNFFAEIL-TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR  424 (514)
T ss_dssp             HHHHHHHHHHHHHSTTCSH---------HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcccCHH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence            9999999999999998754         777888887 699999999999999999976543211113488999999999


Q ss_pred             ---hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703          304 ---LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE  361 (365)
Q Consensus       304 ---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~  361 (365)
                         .|++++|...|++++..+|+++.++..++.++...|++++|...|+++++..| +.|+
T Consensus       425 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~  484 (514)
T 2gw1_A          425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR-TMEE  484 (514)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SHHH
T ss_pred             hhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc-ccHH
Confidence               99999999999999999999999999999999999999999999999999998 4443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=100.00  E-value=4.7e-33  Score=249.04  Aligned_cols=322  Identities=17%  Similarity=0.304  Sum_probs=261.8

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHH----------------
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKL----------------   64 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~----------------   64 (365)
                      ++++|+.+|+++++.+|.+..+|..++.++.+.|++++|+.+|++++...|+..+|..++.+..                
T Consensus        27 ~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~  106 (530)
T 2ooe_A           27 PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQA  106 (530)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence            4688999999999999999999999999999999999999999999999998667777764321                


Q ss_pred             --------------------------H---------hccHHHHHHHHHHHHHhCCcc--hHHHHHHHHHH----------
Q 036703           65 --------------------------R---------YNEVQRARHIFERLVQCHPYN--LSAWINFADFE----------   97 (365)
Q Consensus        65 --------------------------~---------~~~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~~----------   97 (365)
                                                .         .|+++.|+.+|+++++ .|.+  ..+|..++.+.          
T Consensus       107 ~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~  185 (530)
T 2ooe_A          107 YDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKK  185 (530)
T ss_dssp             HHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHH
Confidence                                      1         4566677777777776 4432  23333332221          


Q ss_pred             -------------------------------------------------------Hhh----cc----hHHHHHHHHHHH
Q 036703           98 -------------------------------------------------------MKM----GE----VDRARNVYECAV  114 (365)
Q Consensus        98 -------------------------------------------------------~~~----~~----~~~A~~~~~~a~  114 (365)
                                                                             ...    ++    ..+++.+|++++
T Consensus       186 ~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al  265 (530)
T 2ooe_A          186 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL  265 (530)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence                                                                   000    01    124556777777


Q ss_pred             hhhhcCChhhHHHHHHHHHHHHHhccc-------cchhH-------HHHHHHHHHhc-cCCCchhHHHHHHHHHHHHHcC
Q 036703          115 EIFLADDHDEAEQLFVAFAKFEEMGCN-------CKETD-------RARCIYKFALD-RIPKGRAEDLYRKFLAFEKQYG  179 (365)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~  179 (365)
                      .. .|.+    +.+|..++.++.   .       .|+++       +|+.+|+++++ ..|.+  ..+|..++.++...|
T Consensus       266 ~~-~p~~----~~~w~~~~~~~~---~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~--~~l~~~~~~~~~~~g  335 (530)
T 2ooe_A          266 LV-LGHH----PDIWYEAAQYLE---QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN--MLLYFAYADYEESRM  335 (530)
T ss_dssp             HH-HTTC----HHHHHHHHHHHH---HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC--HHHHHHHHHHHHHTT
T ss_pred             Hh-CCCC----HHHHHHHHHHHH---HhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHhcC
Confidence            77 7776    889999999887   6       68877       99999999998 78876  789999999999999


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHH
Q 036703          180 DREGIEDAIAGKMRLQYEDGVRKNPMNY-DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYAL  258 (365)
Q Consensus       180 ~~~~~~~~~~~~a~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  258 (365)
                      +.+        +|+.+|+++++.+|.++ .+|..++.++...|+.++|+.+|+++++..|.+..         ++...+.
T Consensus       336 ~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~---------~~~~~a~  398 (530)
T 2ooe_A          336 KYE--------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------VYVTAAL  398 (530)
T ss_dssp             CHH--------HHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH---------HHHHHHH
T ss_pred             CHH--------HHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH---------HHHHHHH
Confidence            865        79999999999999985 69999999999999999999999999998877543         3333333


Q ss_pred             HHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchH----HHHHHHHH
Q 036703          259 YKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENC----YAWSKYTE  333 (365)
Q Consensus       259 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~  333 (365)
                      +.....|++++|+.+|+++++..       |+ +.+|..++.++...|++++|+.+|++++...|.++    .+|..++.
T Consensus       399 ~~~~~~~~~~~A~~~~e~al~~~-------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~  471 (530)
T 2ooe_A          399 MEYYCSKDKSVAFKIFELGLKKY-------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA  471 (530)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred             HHHHHcCChhHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            32125899999999999999998       55 88999999999999999999999999999866544    49999999


Q ss_pred             HHhhccchhHHHHHHHHHhcCcCC
Q 036703          334 LEKSLDETERARAIFELAIAQPIL  357 (365)
Q Consensus       334 ~~~~~g~~~~A~~~~~~a~~~~~~  357 (365)
                      ++...|+.+.+..+++++++..|.
T Consensus       472 ~e~~~G~~~~~~~~~~r~~~~~p~  495 (530)
T 2ooe_A          472 FESNIGDLASILKVEKRRFTAFRE  495 (530)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCch
Confidence            999999999999999999998883

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.2e-33  Score=251.44  Aligned_cols=301  Identities=11%  Similarity=0.017  Sum_probs=278.2

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      +++|+.+|++++.. |.+..+|..++..+...|++++|+.+|+++++..|+ ..+|..++.++...|++++|..++++++
T Consensus       288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  366 (597)
T 2xpi_A          288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV  366 (597)
T ss_dssp             HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            57899999999887 777999999999999999999999999999999998 7899999999999999999999999999


Q ss_pred             HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      ...|+++.+|..++.++.+.|++++|+++|+++++. .|.+    ...|..++.++.   ..|++++|+++|+++++..|
T Consensus       367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~  438 (597)
T 2xpi_A          367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQF----GPAWIGFAHSFA---IEGEHDQAISAYTTAARLFQ  438 (597)
T ss_dssp             HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHTCHHHHHHHHHHHHHTTT
T ss_pred             hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999999999 8888    999999999999   99999999999999999988


Q ss_pred             CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Q 036703          161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN----  236 (365)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----  236 (365)
                      .+  ...|..++..+...|+.+        +|+..|+++++..|.++.+|..++.++...|++++|...|+++++.    
T Consensus       439 ~~--~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  508 (597)
T 2xpi_A          439 GT--HLPYLFLGMQHMQLGNIL--------LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT  508 (597)
T ss_dssp             TC--SHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             cc--hHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence            76  578888899998999865        7999999999999999999999999999999999999999999987    


Q ss_pred             --CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHH
Q 036703          237 --VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLY  314 (365)
Q Consensus       237 --~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  314 (365)
                        .|.+.        ..+|..++..+ ...|++++|+..|+++++..|      .++..|..++.++...|++++|.+.|
T Consensus       509 ~~~p~~~--------~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~  573 (597)
T 2xpi_A          509 QSNEKPW--------AATWANLGHAY-RKLKMYDAAIDALNQGLLLST------NDANVHTAIALVYLHKKIPGLAITHL  573 (597)
T ss_dssp             CCCSGGG--------HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSS------CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccchhhH--------HHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHhCCHHHHHHHH
Confidence              34321        34788888887 599999999999999999873      23788999999999999999999999


Q ss_pred             HHHHhhCcchHHHHHHHHHHHh
Q 036703          315 EKYLEWSPENCYAWSKYTELEK  336 (365)
Q Consensus       315 ~~al~~~p~~~~~~~~~~~~~~  336 (365)
                      +++++.+|+++.++..++.++.
T Consensus       574 ~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          574 HESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHhcCCCChHHHHHHHHHHh
Confidence            9999999999999999998764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=8.6e-33  Score=232.53  Aligned_cols=308  Identities=10%  Similarity=0.036  Sum_probs=266.7

Q ss_pred             HHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703            9 WDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL   87 (365)
Q Consensus         9 ~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~   87 (365)
                      ....+...|+++..+..++..+...|++++|+..|+++++.+|. ...+..++.++...|++++|...++++++.+|+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~   90 (330)
T 3hym_B           11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP   90 (330)
T ss_dssp             ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence            34556667888999999999999999999999999999999999 77888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhc-chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHH
Q 036703           88 SAWINFADFEMKMG-EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAED  166 (365)
Q Consensus        88 ~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  166 (365)
                      .+|..+|.++...| ++++|+..|+++++. .|.+    ..+|..+|.++.   ..|++++|+..|+++++..|..  ..
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-~~~~----~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~--~~  160 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTL-EKTY----GPAWIAYGHSFA---VESEHDQAMAAYFTAAQLMKGC--HL  160 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTT-CTTC----THHHHHHHHHHH---HHTCHHHHHHHHHHHHHHTTTC--SH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-CCcc----HHHHHHHHHHHH---HccCHHHHHHHHHHHHHhcccc--HH
Confidence            99999999999999 999999999999999 8888    899999999999   9999999999999999999886  45


Q ss_pred             HHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHH
Q 036703          167 LYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYW  246 (365)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  246 (365)
                      .+..++..+...|+.+        +|...|++++..+|++..++..+|.++...|++++|...+++++...|........
T Consensus       161 ~~~~l~~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  232 (330)
T 3hym_B          161 PMLYIGLEYGLTNNSK--------LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV  232 (330)
T ss_dssp             HHHHHHHHHHHTTCHH--------HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTT
T ss_pred             HHHHHHHHHHHHhhHH--------HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccc
Confidence            6777888888888865        79999999999999999999999999999999999999999999875321100000


Q ss_pred             HHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchH
Q 036703          247 QRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENC  325 (365)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  325 (365)
                      .....++..++..+ ...|++++|+..|+++++..       |+ +..+..+|.++...|++++|...|+++++.+|+++
T Consensus       233 ~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (330)
T 3hym_B          233 DKWEPLLNNLGHVC-RKLKKYAEALDYHRQALVLI-------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDT  304 (330)
T ss_dssp             TTCCHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHS-------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred             cHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhhC-------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCch
Confidence            00123778888887 69999999999999999997       44 67889999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-hhccchh
Q 036703          326 YAWSKYTELE-KSLDETE  342 (365)
Q Consensus       326 ~~~~~~~~~~-~~~g~~~  342 (365)
                      .++..++.++ ...|+.+
T Consensus       305 ~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          305 FSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHHHHHhCchh
Confidence            9999999987 5666654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=1.1e-32  Score=235.48  Aligned_cols=293  Identities=14%  Similarity=0.098  Sum_probs=250.5

Q ss_pred             HHHhcCChhHHHH-HHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc
Q 036703           29 MEENLGNVAGARQ-IFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE  102 (365)
Q Consensus        29 ~~~~~g~~~~A~~-~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  102 (365)
                      ++...|++++|+. .|++++...|+     ...|..+|..+...|++++|...|+++++.+|+++.++..+|.++...|+
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcC
Confidence            4556789999999 99999988876     35689999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHH-------------
Q 036703          103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYR-------------  169 (365)
Q Consensus       103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~-------------  169 (365)
                      +++|+..|+++++. .|.+    ..++..+|.++.   ..|++++|+..|++++...|.........             
T Consensus       114 ~~~A~~~~~~al~~-~~~~----~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (368)
T 1fch_A          114 ELLAISALRRCLEL-KPDN----QTALMALAVSFT---NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK  185 (368)
T ss_dssp             HHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred             HHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHH
Confidence            99999999999999 9888    999999999999   99999999999999999988764221111             


Q ss_pred             -HHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHH
Q 036703          170 -KFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM--NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYW  246 (365)
Q Consensus       170 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  246 (365)
                       .+..+. ..|+        .++|+..|+++++.+|.  +..++..+|.++...|++++|+..|++++...|.+..    
T Consensus       186 ~~~~~~~-~~~~--------~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----  252 (368)
T 1fch_A          186 RILGSLL-SDSL--------FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL----  252 (368)
T ss_dssp             CTTHHHH-HHHH--------HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----
T ss_pred             HHHHHHh-hccc--------HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH----
Confidence             122222 3443        34799999999999999  8999999999999999999999999999999998753    


Q ss_pred             HHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch-
Q 036703          247 QRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN-  324 (365)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-  324 (365)
                           ++..++..+ ...|++++|+..|++++...       |+ +..+..+|.++...|++++|...|+++++..|++ 
T Consensus       253 -----~~~~l~~~~-~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  319 (368)
T 1fch_A          253 -----LWNKLGATL-ANGNQSEEAVAAYRRALELQ-------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSR  319 (368)
T ss_dssp             -----HHHHHHHHH-HHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             -----HHHHHHHHH-HHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCC
Confidence                 788888887 59999999999999999987       54 7889999999999999999999999999999988 


Q ss_pred             ----------HHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          325 ----------CYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       325 ----------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                                ..+|..++.++...|+.++|..+++++++.-
T Consensus       320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  360 (368)
T 1fch_A          320 GPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTL  360 (368)
T ss_dssp             -----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred             CccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence                      8999999999999999999999998877543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=100.00  E-value=4.1e-31  Score=237.87  Aligned_cols=348  Identities=13%  Similarity=0.205  Sum_probs=263.8

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhcc---HHHHHHHHHHH
Q 036703            4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNE---VQRARHIFERL   79 (365)
Q Consensus         4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~---~~~A~~~~~~~   79 (365)
                      +.+..|++.+..+|.+...|..|+....+.++++.++.+|++++...|. ...|..|+.+..+.|+   ++.+..+|+++
T Consensus        50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa  129 (679)
T 4e6h_A           50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC  129 (679)
T ss_dssp             CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999 8999999999999999   99999999999


Q ss_pred             HHhCC--cchHHHHHHHHHHHhhcch--------HHHHHHHHHHHhhhhcC-ChhhHHHHHHHHHHHHHhc------ccc
Q 036703           80 VQCHP--YNLSAWINFADFEMKMGEV--------DRARNVYECAVEIFLAD-DHDEAEQLFVAFAKFEEMG------CNC  142 (365)
Q Consensus        80 l~~~p--~~~~~~~~~~~~~~~~~~~--------~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~  142 (365)
                      +...|  .++.+|..++.+..+.++.        +..+++|++|+.. .+. + +.+..+|..++.++...      ..+
T Consensus       130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~-vG~~d-~~s~~iW~~Yi~f~~~~~~~~~~eeq  207 (679)
T 4e6h_A          130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK-CAIFE-PKSIQFWNEYLHFLEHWKPVNKFEEQ  207 (679)
T ss_dssp             TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH-TTTTC-SSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-hCccc-ccchHHHHHHHHHHHhccccCcHHHH
Confidence            99993  4899999999998876654        4456899999998 665 4 44578999999886510      024


Q ss_pred             chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCch----------------------------------------
Q 036703          143 KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDRE----------------------------------------  182 (365)
Q Consensus       143 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~----------------------------------------  182 (365)
                      ++++.++.+|++++. .|......+|..|..++...+...                                        
T Consensus       208 ~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~  286 (679)
T 4e6h_A          208 QRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA  286 (679)
T ss_dssp             HHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred             hHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence            567889999999996 465444556666655544321100                                        


Q ss_pred             -------------------------------hhhH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHH-HH
Q 036703          183 -------------------------------GIED-AIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR-EV  229 (365)
Q Consensus       183 -------------------------------~~~~-~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~-~~  229 (365)
                                                     .+++ ...++.+.+|++++..+|.++++|+.++.++...|+.++|+ .+
T Consensus       287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~i  366 (679)
T 4e6h_A          287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY  366 (679)
T ss_dssp             CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred             hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence                                           0000 11234567899999999999999999999999999999996 99


Q ss_pred             HHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc-----------cc-----------CCCc
Q 036703          230 YERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY-----------FS-----------FSPR  287 (365)
Q Consensus       230 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-----------~~-----------~~~~  287 (365)
                      |++++..+|.+..         +|+.++.+++ ..|++++|+.+|++++...           |+           ...+
T Consensus       367 l~rAi~~~P~s~~---------Lwl~~a~~ee-~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v  436 (679)
T 4e6h_A          367 LKLGQQCIPNSAV---------LAFSLSEQYE-LNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV  436 (679)
T ss_dssp             HHHHHHHCTTCHH---------HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHH---------HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence            9999999998742         5555665553 5555666666666655431           10           1112


Q ss_pred             c---------------------------h--hHHHHHHHHHHHHHhC-CCccHHHHHHHHHhhCcchHHHHHHHHHHHhh
Q 036703          288 M---------------------------E--ERRIFKKYIEMELCLG-NIDPCRKLYEKYLEWSPENCYAWSKYTELEKS  337 (365)
Q Consensus       288 ~---------------------------~--~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  337 (365)
                      |                           |  ...+|...+.++...+ +.+.|+++|+++++..|+++.+|..++.++..
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~  516 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY  516 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence            2                           1  1456777777777664 48889999999998888888999999999988


Q ss_pred             ccchhHHHHHHHHHhcCcCC-CCCcccc
Q 036703          338 LDETERARAIFELAIAQPIL-DLPEFLW  364 (365)
Q Consensus       338 ~g~~~~A~~~~~~a~~~~~~-~~p~~~~  364 (365)
                      .|+.++|+.+|++++...|. +.+..+|
T Consensus       517 ~~~~~~AR~lferal~~~~~~~~~~~lw  544 (679)
T 4e6h_A          517 VNEESQVKSLFESSIDKISDSHLLKMIF  544 (679)
T ss_dssp             HTCHHHHHHHHHHHTTTSSSTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            99999999999999988772 2344454

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.5e-31  Score=233.21  Aligned_cols=331  Identities=14%  Similarity=0.069  Sum_probs=254.5

Q ss_pred             ChhhHHHHHHHHHHh---------CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC--------C-hHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTL---------SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--------D-HEGWLSYIKF   62 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~---------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--------~-~~~~~~~~~~   62 (365)
                      ++++|++.|++++++         +|....+|..+|.++...|++++|...+++++++.|        . ..++...+..
T Consensus        66 ~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~  145 (472)
T 4g1t_A           66 QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWT  145 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHH
Confidence            578999999999986         577778899999999999999999999999998633        2 4566666655


Q ss_pred             HHH--hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           63 KLR--YNEVQRARHIFERLVQCHPYNLSAWINFADFEMK---MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        63 ~~~--~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      +..  .+++++|+..|+++++.+|+++.++..++.++..   .++.++|++.|+++++. .|.+    ..++..++..+.
T Consensus       146 ~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l-~p~~----~~~~~~l~~~~~  220 (472)
T 4g1t_A          146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL-NPDN----QYLKVLLALKLH  220 (472)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH-CSSC----HHHHHHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc-CCcc----hHHHHHHHHHHH
Confidence            444  4689999999999999999999999999988665   46678899999999999 9988    777777765443


Q ss_pred             -hccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 036703          138 -MGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRL  216 (365)
Q Consensus       138 -~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~  216 (365)
                       +....|++++|...|++++...|..  ..++..++.++...|+.+        +|+..|+++++.+|++..++..+|.+
T Consensus       221 ~~~~~~~~~~~a~~~~~~al~~~~~~--~~~~~~lg~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~lg~~  290 (472)
T 4g1t_A          221 KMREEGEEEGEGEKLVEEALEKAPGV--TDVLRSAAKFYRRKDEPD--------KAIELLKKALEYIPNNAYLHCQIGCC  290 (472)
T ss_dssp             HCC------CHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHHcCchH--------HHHHHHHHHHHhCCChHHHHHHHHHH
Confidence             1115678899999999999999987  678888999999999866        79999999999999999999999988


Q ss_pred             HHHh-------------------CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 036703          217 EERV-------------------GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL  277 (365)
Q Consensus       217 ~~~~-------------------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  277 (365)
                      +...                   +.++.|...|++++...|....         .+..+|..+ ...|++++|+..|+++
T Consensus       291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~lg~~~-~~~~~~~~A~~~~~ka  360 (472)
T 4g1t_A          291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR---------VCSILASLH-ALADQYEEAEYYFQKE  360 (472)
T ss_dssp             HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC---------CHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh---------hhhhHHHHH-HHhccHHHHHHHHHHH
Confidence            7543                   3467899999999999998754         677788887 5999999999999999


Q ss_pred             HhccccCCCcchh-HHHHHHHHHHH-HHhCCCccHHHHHHHHHhh------------------------CcchHHHHHHH
Q 036703          278 FIFYFSFSPRMEE-RRIFKKYIEME-LCLGNIDPCRKLYEKYLEW------------------------SPENCYAWSKY  331 (365)
Q Consensus       278 ~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~------------------------~p~~~~~~~~~  331 (365)
                      ++..++.    .. ..++..++.+. ...|++++|+..|++++++                        +|+++.+|..+
T Consensus       361 L~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~L  436 (472)
T 4g1t_A          361 FSKELTP----VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVL  436 (472)
T ss_dssp             HHSCCCH----HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred             HhcCCCC----hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9986431    11 34566777654 4779999999999988765                        45667899999


Q ss_pred             HHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703          332 TELEKSLDETERARAIFELAIAQPILDLPE  361 (365)
Q Consensus       332 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~  361 (365)
                      |.++...|++++|++.|++|++..| ..|.
T Consensus       437 G~~~~~~g~~~~A~~~y~kALe~~~-~~p~  465 (472)
T 4g1t_A          437 AFLQELNEKMQQADEDSERGLESGS-LIPS  465 (472)
T ss_dssp             HHHHHHHHHCC-------------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC-CCCc
Confidence            9999999999999999999999988 4444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=6.3e-31  Score=235.98  Aligned_cols=311  Identities=8%  Similarity=0.028  Sum_probs=262.9

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703           19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE   97 (365)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~   97 (365)
                      .+..|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            4678999999999999999999999999999998 899999999999999999999999999999999999999999999


Q ss_pred             HhhcchHHHHHHHHHHHhhhhcCChhhH----------------------------------------------------
Q 036703           98 MKMGEVDRARNVYECAVEIFLADDHDEA----------------------------------------------------  125 (365)
Q Consensus        98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~----------------------------------------------------  125 (365)
                      ...|++++|+..|+ ++.. .|+.....                                                    
T Consensus       104 ~~~g~~~~A~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (537)
T 3fp2_A          104 ESLGNFTDAMFDLS-VLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS  181 (537)
T ss_dssp             HHHTCHHHHHHHHH-HHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred             HHcCCHHHHHHHHH-HHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence            99999999999995 6655 55430000                                                    


Q ss_pred             ------------HHHHHHHHHHHHh-----ccccchhHHHHHHHHHHhccCCCchh-----HHHHHHHHHHHHHcCCchh
Q 036703          126 ------------EQLFVAFAKFEEM-----GCNCKETDRARCIYKFALDRIPKGRA-----EDLYRKFLAFEKQYGDREG  183 (365)
Q Consensus       126 ------------~~~~~~~~~~~~~-----~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~~~~~~~~~~~~  183 (365)
                                  ..+...++.++..     ....|++++|+..|+++++..|.+..     ...+...+.++...|+.+ 
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~-  260 (537)
T 3fp2_A          182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL-  260 (537)
T ss_dssp             TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred             HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH-
Confidence                        0022222222220     00335899999999999999998642     234556667777778755 


Q ss_pred             hhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703          184 IEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD  263 (365)
Q Consensus       184 ~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  263 (365)
                             +|+..|++++..+|+ ..++..+|.++...|++++|...|++++...|.+..         ++..++.++ ..
T Consensus       261 -------~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~-~~  322 (537)
T 3fp2_A          261 -------DAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP---------TYYHRGQMY-FI  322 (537)
T ss_dssp             -------HHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH-HH
T ss_pred             -------HHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH---------HHHHHHHHH-Hh
Confidence                   799999999999999 899999999999999999999999999999998753         788888887 59


Q ss_pred             cCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchh
Q 036703          264 AGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETE  342 (365)
Q Consensus       264 ~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  342 (365)
                      .|++++|+..|+++++..       |+ +..+..++.++...|++++|...|+++++.+|+++.++..++.++...|+++
T Consensus       323 ~~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  395 (537)
T 3fp2_A          323 LQDYKNAKEDFQKAQSLN-------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFD  395 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHC-------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHH
T ss_pred             cCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHH
Confidence            999999999999999998       44 6788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcCC
Q 036703          343 RARAIFELAIAQPIL  357 (365)
Q Consensus       343 ~A~~~~~~a~~~~~~  357 (365)
                      +|...|+++++..|.
T Consensus       396 ~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          396 TAIKQYDIAKRLEEV  410 (537)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCc
Confidence            999999999998873

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.7e-30  Score=218.57  Aligned_cols=288  Identities=8%  Similarity=0.011  Sum_probs=256.8

Q ss_pred             HHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh
Q 036703           45 RWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD  123 (365)
Q Consensus        45 ~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  123 (365)
                      ..+...|+ ...+...+..+...|++++|..+|++++..+|.+...+..++.++...|++++|+..++++++. .|.+  
T Consensus        13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~--   89 (330)
T 3hym_B           13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL-YPSN--   89 (330)
T ss_dssp             -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTS--
T ss_pred             HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-CcCC--
Confidence            33333444 6788899999999999999999999999999999999999999999999999999999999999 9888  


Q ss_pred             hHHHHHHHHHHHHHhccccc-hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703          124 EAEQLFVAFAKFEEMGCNCK-ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK  202 (365)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~  202 (365)
                        +.+|..+|.++.   ..| ++++|+..|+++++..|..  ...|..++..+...|+.+        .|+..|+++++.
T Consensus        90 --~~~~~~l~~~~~---~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~  154 (330)
T 3hym_B           90 --PVSWFAVGCYYL---MVGHKNEHARRYLSKATTLEKTY--GPAWIAYGHSFAVESEHD--------QAMAAYFTAAQL  154 (330)
T ss_dssp             --THHHHHHHHHHH---HSCSCHHHHHHHHHHHHTTCTTC--THHHHHHHHHHHHHTCHH--------HHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHccCHH--------HHHHHHHHHHHh
Confidence              999999999999   999 9999999999999999886  578889999999999866        799999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc
Q 036703          203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF  282 (365)
Q Consensus       203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~  282 (365)
                      .|++..++..++.++...|++++|...|+++++..|.+..         ++..++.++ ...|++++|+..+++++...+
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~~  224 (330)
T 3hym_B          155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF---------VMHEVGVVA-FQNGEWKTAEKWFLDALEKIK  224 (330)
T ss_dssp             TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---------HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH---------HHHHHHHHH-HHcccHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999853         778888887 699999999999999999854


Q ss_pred             cCCCcc--h-hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCC
Q 036703          283 SFSPRM--E-ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDL  359 (365)
Q Consensus       283 ~~~~~~--~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~  359 (365)
                      ......  | .+.++..+|.++...|++++|...|+++++.+|+++.+|..++.++...|++++|...|+++++..| +.
T Consensus       225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~  303 (330)
T 3hym_B          225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DD  303 (330)
T ss_dssp             TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CC
T ss_pred             hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-Cc
Confidence            322110  2 2678999999999999999999999999999999999999999999999999999999999999999 44


Q ss_pred             Cc
Q 036703          360 PE  361 (365)
Q Consensus       360 p~  361 (365)
                      |.
T Consensus       304 ~~  305 (330)
T 3hym_B          304 TF  305 (330)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=5.4e-31  Score=225.07  Aligned_cols=295  Identities=13%  Similarity=0.037  Sum_probs=253.7

Q ss_pred             ChhhHHH-HHHHHHHhCCCch----HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHH
Q 036703            1 FIDHGRN-AWDRVVTLSPRVD----QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARH   74 (365)
Q Consensus         1 ~~~~A~~-~~~~~l~~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~   74 (365)
                      +|++|+. .|++++...|+++    ..|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|..
T Consensus        40 ~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  119 (368)
T 1fch_A           40 DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS  119 (368)
T ss_dssp             ------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            3567777 8888888888764    56999999999999999999999999999999 7899999999999999999999


Q ss_pred             HHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH---------------HHHHHhc
Q 036703           75 IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF---------------AKFEEMG  139 (365)
Q Consensus        75 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~---------------~~~~~~~  139 (365)
                      .|+++++.+|+++.++..+|.++...|++++|+..|+++++. .|.+    ...+...               .....  
T Consensus       120 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--  192 (368)
T 1fch_A          120 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY-TPAY----AHLVTPAEEGAGGAGLGPSKRILGSLL--  192 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-STTT----GGGCC---------------CTTHHHH--
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCc----HHHHHHHHHHhhhhcccHHHHHHHHHh--
Confidence            999999999999999999999999999999999999999999 8876    4443311               23334  


Q ss_pred             cccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 036703          140 CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER  219 (365)
Q Consensus       140 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~  219 (365)
                       ..|++++|+..|+++++..|......++..++.++...|+.+        +|+..|++++..+|+++.+|..+|.++..
T Consensus       193 -~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~l~~~~~~  263 (368)
T 1fch_A          193 -SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD--------KAVDCFTAALSVRPNDYLLWNKLGATLAN  263 (368)
T ss_dssp             -HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             -hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence             689999999999999999998433678889999999999866        79999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc----h-hHHHH
Q 036703          220 VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM----E-ERRIF  294 (365)
Q Consensus       220 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~----~-~~~~~  294 (365)
                      .|++++|+..|+++++..|.+.         .++..++..+ ...|++++|+..|++++...|......    | ...+|
T Consensus       264 ~g~~~~A~~~~~~al~~~~~~~---------~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  333 (368)
T 1fch_A          264 GNQSEEAVAAYRRALELQPGYI---------RSRYNLGISC-INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW  333 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence            9999999999999999999875         3788888887 699999999999999999976542100    1 16789


Q ss_pred             HHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703          295 KKYIEMELCLGNIDPCRKLYEKYLEWS  321 (365)
Q Consensus       295 ~~~~~~~~~~~~~~~A~~~~~~al~~~  321 (365)
                      ..++.++...|++++|..+++++++..
T Consensus       334 ~~l~~~~~~~g~~~~A~~~~~~~l~~~  360 (368)
T 1fch_A          334 STLRLALSMLGQSDAYGAADARDLSTL  360 (368)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCChHhHHHhHHHHHHHH
Confidence            999999999999999999999887653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=100.00  E-value=3.5e-31  Score=226.01  Aligned_cols=282  Identities=13%  Similarity=0.075  Sum_probs=238.4

Q ss_pred             HHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 036703           41 QIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE  115 (365)
Q Consensus        41 ~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  115 (365)
                      ..+.+++...|.     ...|...|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  127 (365)
T 4eqf_A           48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE  127 (365)
T ss_dssp             -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            344444444443     356999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhH--------HHHHHHHHHHHHcCCchhhhHH
Q 036703          116 IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE--------DLYRKFLAFEKQYGDREGIEDA  187 (365)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~  187 (365)
                      . .|.+    ..+|..+|.++.   ..|++++|+..|+++++..|.....        .++..++..+...|+       
T Consensus       128 ~-~p~~----~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------  192 (365)
T 4eqf_A          128 L-QPNN----LKALMALAVSYT---NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV-------  192 (365)
T ss_dssp             H-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH-------
T ss_pred             c-CCCC----HHHHHHHHHHHH---ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh-------
Confidence            9 8888    999999999999   9999999999999999988775311        111223445555554       


Q ss_pred             HHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccC
Q 036703          188 IAGKMRLQYEDGVRKNPM--NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAG  265 (365)
Q Consensus       188 ~~~~a~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (365)
                       .++|+..|+++++.+|.  ++.++..+|.++...|++++|+..|+++++..|.+..         +|..++..+ ...|
T Consensus       193 -~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~-~~~g  261 (365)
T 4eqf_A          193 -LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS---------LWNRLGATL-ANGD  261 (365)
T ss_dssp             -HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH-HHTT
T ss_pred             -HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHH-HHcC
Confidence             34799999999999999  8999999999999999999999999999999999853         888899988 5999


Q ss_pred             ChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc------------hHHHHHHHH
Q 036703          266 DLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE------------NCYAWSKYT  332 (365)
Q Consensus       266 ~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~  332 (365)
                      ++++|+..|+++++..       |+ +..+..+|.++...|++++|+..|+++++..|+            +..+|..++
T Consensus       262 ~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~  334 (365)
T 4eqf_A          262 RSEEAVEAYTRALEIQ-------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR  334 (365)
T ss_dssp             CHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence            9999999999999998       55 788999999999999999999999999999887            478999999


Q ss_pred             HHHhhccchhHHHHHHHHHhcCc
Q 036703          333 ELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      .++...|+.+.+..+.++.+..-
T Consensus       335 ~~~~~~g~~~~a~~~~~~~l~~~  357 (365)
T 4eqf_A          335 IALSLMDQPELFQAANLGDLDVL  357 (365)
T ss_dssp             HHHHHHTCHHHHHHHHTTCCGGG
T ss_pred             HHHHHcCcHHHHHHHHHhhHHHH
Confidence            99999999999988877655433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.98  E-value=1.7e-29  Score=227.45  Aligned_cols=323  Identities=12%  Similarity=0.194  Sum_probs=259.4

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC---hhHHHHHHHHHHhhC---CChHHHHHHHHHHHHhccH------
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGN---VAGARQIFERWMHWM---PDHEGWLSYIKFKLRYNEV------   69 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~------   69 (365)
                      ++.++.+|++++..+|.....|..++..+.+.|+   ++.+..+|++++...   |+..+|..|+.+....++.      
T Consensus        82 ~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~  161 (679)
T 4e6h_A           82 WKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEE  161 (679)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccch
Confidence            5678999999999999999999999999999998   999999999999888   7788999999887765542      


Q ss_pred             --HHHHHHHHHHHHh----CCcchHHHHHHHHHHHh---------hcchHHHHHHHHHHHh-------------------
Q 036703           70 --QRARHIFERLVQC----HPYNLSAWINFADFEMK---------MGEVDRARNVYECAVE-------------------  115 (365)
Q Consensus        70 --~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~a~~-------------------  115 (365)
                        +..+.+|++++..    +|.+..+|..+..++..         +++.+.++.+|++++.                   
T Consensus       162 ~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~  241 (679)
T 4e6h_A          162 ARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQD  241 (679)
T ss_dssp             HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh
Confidence              4455788888763    56677788888766542         2344555555555543                   


Q ss_pred             --------------------------------------------------------------------------------
Q 036703          116 --------------------------------------------------------------------------------  115 (365)
Q Consensus       116 --------------------------------------------------------------------------------  115 (365)
                                                                                                      
T Consensus       242 ~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~  321 (679)
T 4e6h_A          242 VNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSD  321 (679)
T ss_dssp             HCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCH
T ss_pred             cCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccc
Confidence                                                                                            


Q ss_pred             ----------------hhhcCChhhHHHHHHHHHHHHHhccccchhHHHH-HHHHHHhccCCCchhHHHHHHHHHHHHHc
Q 036703          116 ----------------IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRAR-CIYKFALDRIPKGRAEDLYRKFLAFEKQY  178 (365)
Q Consensus       116 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  178 (365)
                                      . .|..    +.+|+.++.++.   ..|+.++|+ .+|++|+..+|.+  ..+|..++.++...
T Consensus       322 ~~~~~Rv~~~Ye~aL~~-~p~~----~~lW~~ya~~~~---~~~~~~~a~r~il~rAi~~~P~s--~~Lwl~~a~~ee~~  391 (679)
T 4e6h_A          322 DLHKARMTYVYMQAAQH-VCFA----PEIWFNMANYQG---EKNTDSTVITKYLKLGQQCIPNS--AVLAFSLSEQYELN  391 (679)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTTC----HHHHHHHHHHHH---HHSCCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHH-cCCC----HHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHh
Confidence                            3 3332    566777777777   788888886 9999999888876  67888999998888


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHc-----------CCC-----------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703          179 GDREGIEDAIAGKMRLQYEDGVRK-----------NPM-----------NYDTWFDYIRLEERVGNQERVREVYERAIAN  236 (365)
Q Consensus       179 ~~~~~~~~~~~~~a~~~~~~~l~~-----------~p~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  236 (365)
                      |+.+        +|+.+|++++..           .|.           ...+|..++.+..+.|+.+.|+.+|.+|++.
T Consensus       392 ~~~e--------~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          392 TKIP--------EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             TCHH--------HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             CCHH--------HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8754        688899988874           253           3458999999999999999999999999987


Q ss_pred             CC-CchhhhHHHHhHHHHHHHHHHHhhcc-CChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHH
Q 036703          237 VP-PAEEKRYWQRYIYLWINYALYKEVDA-GDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKL  313 (365)
Q Consensus       237 ~p-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~  313 (365)
                      .| ...         .+|+.++.++ ... ++++.|+.+|+++++..       |+ +.+|..+++++...|+.+.|+.+
T Consensus       464 ~~~~~~---------~lyi~~A~lE-~~~~~d~e~Ar~ife~~Lk~~-------p~~~~~w~~y~~fe~~~~~~~~AR~l  526 (679)
T 4e6h_A          464 KKLVTP---------DIYLENAYIE-YHISKDTKTACKVLELGLKYF-------ATDGEYINKYLDFLIYVNEESQVKSL  526 (679)
T ss_dssp             GGGSCT---------HHHHHHHHHH-HTTTSCCHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cCCCCh---------HHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC-------CCchHHHHHHHHHHHhCCCHHHHHHH
Confidence            33 222         2677777775 455 45999999999999997       54 77899999999999999999999


Q ss_pred             HHHHHhhCc---chHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCC
Q 036703          314 YEKYLEWSP---ENCYAWSKYTELEKSLDETERARAIFELAIAQPILDL  359 (365)
Q Consensus       314 ~~~al~~~p---~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~  359 (365)
                      |++++...|   ....+|..+..++...|+.+.+.++++++.+..|.+.
T Consensus       527 feral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          527 FESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             HHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            999999988   5789999999999999999999999999999999543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.98  E-value=1.2e-30  Score=222.78  Aligned_cols=287  Identities=13%  Similarity=0.048  Sum_probs=241.3

Q ss_pred             HHHHHHHHhCCCch----HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703            7 NAWDRVVTLSPRVD----QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus         7 ~~~~~~l~~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      ..++++....|.++    ..|+.+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|+++++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  127 (365)
T 4eqf_A           48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE  127 (365)
T ss_dssp             -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            33444444445544    44999999999999999999999999999999 78999999999999999999999999999


Q ss_pred             hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH----------HHHHHHHhccccchhHHHHHH
Q 036703           82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV----------AFAKFEEMGCNCKETDRARCI  151 (365)
Q Consensus        82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~A~~~  151 (365)
                      .+|+++.+|..+|.++...|++++|+..|+++++. .|.+    ...+.          .++.++.   ..|++++|+..
T Consensus       128 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~  199 (365)
T 4eqf_A          128 LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ-NPKY----KYLVKNKKGSPGLTRRMSKSPV---DSSVLEGVKEL  199 (365)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CHHH----HCC----------------------CCHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh-Cccc----hHHHhhhccchHHHHHHHHHHh---hhhhHHHHHHH
Confidence            99999999999999999999999999999999999 7765    44444          4488999   99999999999


Q ss_pred             HHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 036703          152 YKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYE  231 (365)
Q Consensus       152 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~  231 (365)
                      |+++++..|.......+..++.++...|+.+        +|+..|+++++.+|++..+|..+|.++...|++++|+..|+
T Consensus       200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  271 (365)
T 4eqf_A          200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN--------RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT  271 (365)
T ss_dssp             HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhCcCccCHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999998433678999999999999866        79999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCc------chhHHHHHHHHHHHHHhC
Q 036703          232 RAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR------MEERRIFKKYIEMELCLG  305 (365)
Q Consensus       232 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~  305 (365)
                      ++++..|.+..         ++..++.++ ...|++++|+..|+++++..|.....      +....+|..++.++...|
T Consensus       272 ~al~~~p~~~~---------~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  341 (365)
T 4eqf_A          272 RALEIQPGFIR---------SRYNLGISC-INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD  341 (365)
T ss_dssp             HHHHHCTTCHH---------HHHHHHHHH-HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred             HHHhcCCCchH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence            99999999853         788888887 59999999999999999997653220      012578999999999999


Q ss_pred             CCccHHHHHHHHHh
Q 036703          306 NIDPCRKLYEKYLE  319 (365)
Q Consensus       306 ~~~~A~~~~~~al~  319 (365)
                      +.+.+..+.++.+.
T Consensus       342 ~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          342 QPELFQAANLGDLD  355 (365)
T ss_dssp             CHHHHHHHHTTCCG
T ss_pred             cHHHHHHHHHhhHH
Confidence            99988888776544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.97  E-value=4.9e-29  Score=209.29  Aligned_cols=277  Identities=13%  Similarity=0.070  Sum_probs=236.7

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703           19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE   97 (365)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~   97 (365)
                      +...|+.+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++++.+|+++.++..+|.++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   99 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            3466899999999999999999999999999998 789999999999999999999999999999999999999999999


Q ss_pred             HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH--------------HH-HHHhccccchhHHHHHHHHHHhccCCCc
Q 036703           98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF--------------AK-FEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus        98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      ...|++++|+..++++++. .|..    ...+..+              +. ++.   ..|++++|+..++++++..|.+
T Consensus       100 ~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~~  171 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLS-QPQY----EQLGSVNLQADVDIDDLNVQSEDFFFA---APNEYRECRTLLHAALEMNPND  171 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHT-STTT----TTC--------------------CCTT---SHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHcCCHHHHHHHHHHHHHh-CCcc----HHHHHHHhHHHHHHHHHHHHHHhHHHH---HcccHHHHHHHHHHHHhhCCCC
Confidence            9999999999999999999 8876    5555555              55 577   8999999999999999998886


Q ss_pred             hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703          163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                        ...+..++..+...|+.+        +|+..++++++.+|++..+|..++.++...|++++|...|+++++..|.+..
T Consensus       172 --~~~~~~la~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  241 (327)
T 3cv0_A          172 --AQLHASLGVLYNLSNNYD--------SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR  241 (327)
T ss_dssp             --HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             --HHHHHHHHHHHHHhccHH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence              678888888988999865        7999999999999999999999999999999999999999999999998753


Q ss_pred             hhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcch------hHHHHHHHHHHHHHhCCCccHHHHHHH
Q 036703          243 KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRME------ERRIFKKYIEMELCLGNIDPCRKLYEK  316 (365)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~  316 (365)
                               .+..++.++ ...|++++|+..|++++...|.......      .+..+..++.++...|++++|..++++
T Consensus       242 ---------~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          242 ---------VMYNMAVSY-SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             ---------HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             ---------HHHHHHHHH-HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                     777888887 5889999999999999988754211100      356677777777777887777777777


Q ss_pred             HHhhCcc
Q 036703          317 YLEWSPE  323 (365)
Q Consensus       317 al~~~p~  323 (365)
                      +++..|+
T Consensus       312 ~l~~~~~  318 (327)
T 3cv0_A          312 NVEPFAK  318 (327)
T ss_dssp             CSHHHHH
T ss_pred             HHHhcch
Confidence            7666554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.97  E-value=1.3e-29  Score=212.84  Aligned_cols=270  Identities=14%  Similarity=0.088  Sum_probs=240.0

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF  132 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  132 (365)
                      ...|...+..+...|++++|...|+++++.+|+++.++..+|.++...|++++|+..++++++. .|.+    ..++..+
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~----~~~~~~l   95 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKD----IAVHAAL   95 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcCC----HHHHHHH
Confidence            4578899999999999999999999999999999999999999999999999999999999999 9888    9999999


Q ss_pred             HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHH--------------HH-HHHHcCCchhhhHHHHHHHHHHHH
Q 036703          133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKF--------------LA-FEKQYGDREGIEDAIAGKMRLQYE  197 (365)
Q Consensus       133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~a~~~~~  197 (365)
                      |.++.   ..|++++|+..|+++++..|...  ..+...              +. ++...|        ..++|+..++
T Consensus        96 a~~~~---~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~  162 (327)
T 3cv0_A           96 AVSHT---NEHNANAALASLRAWLLSQPQYE--QLGSVNLQADVDIDDLNVQSEDFFFAAPN--------EYRECRTLLH  162 (327)
T ss_dssp             HHHHH---HTTCHHHHHHHHHHHHHTSTTTT--TC--------------------CCTTSHH--------HHHHHHHHHH
T ss_pred             HHHHH---HcCCHHHHHHHHHHHHHhCCccH--HHHHHHhHHHHHHHHHHHHHHhHHHHHcc--------cHHHHHHHHH
Confidence            99999   99999999999999999988763  222222              11 111222        2457999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHH
Q 036703          198 DGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTL  277 (365)
Q Consensus       198 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  277 (365)
                      ++++.+|.+..++..++.++...|++++|...+++++...|.+..         ++..++..+ ...|++++|+..|+++
T Consensus       163 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~-~~~~~~~~A~~~~~~a  232 (327)
T 3cv0_A          163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ---------LWNKLGATL-ANGNRPQEALDAYNRA  232 (327)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred             HHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998753         778888887 5899999999999999


Q ss_pred             HhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc------------hHHHHHHHHHHHhhccchhHH
Q 036703          278 FIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE------------NCYAWSKYTELEKSLDETERA  344 (365)
Q Consensus       278 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~g~~~~A  344 (365)
                      ++..       |+ +..+..++.++...|++++|...|++++...|+            +..+|..++.++...|+.++|
T Consensus       233 ~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  305 (327)
T 3cv0_A          233 LDIN-------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV  305 (327)
T ss_dssp             HHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence            9987       54 778899999999999999999999999999999            899999999999999999999


Q ss_pred             HHHHHHHhcCcCC
Q 036703          345 RAIFELAIAQPIL  357 (365)
Q Consensus       345 ~~~~~~a~~~~~~  357 (365)
                      ..+++++++..|.
T Consensus       306 ~~~~~~~l~~~~~  318 (327)
T 3cv0_A          306 ELTYAQNVEPFAK  318 (327)
T ss_dssp             HHHTTCCSHHHHH
T ss_pred             HHHHHHHHHhcch
Confidence            9999988876653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=6.1e-27  Score=206.75  Aligned_cols=312  Identities=10%  Similarity=0.031  Sum_probs=247.4

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhh---------CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHW---------MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCH------   83 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------   83 (365)
                      ..++..+|.++...|++++|++.|++++++         +|. ..+|..+|.++...|++++|...|++++++.      
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            567889999999999999999999999986         344 5678899999999999999999999999863      


Q ss_pred             --CcchHHHHHHHHHHHh--hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703           84 --PYNLSAWINFADFEMK--MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus        84 --p~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  159 (365)
                        +..+.++...|..+..  .+++++|+.+|+++++. .|++    +.++..++.++......++.++|+..|+++++..
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-~p~~----~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~  205 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-KPKN----PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN  205 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence              3456777777766655  45799999999999999 9998    8889888887651114466789999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 036703          160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP  239 (365)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  239 (365)
                      |.+.  .++..++......+....    ..+.|...|++++..+|.+..++..+|.++...|++++|+..|+++++..|.
T Consensus       206 p~~~--~~~~~l~~~~~~~~~~~~----~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~  279 (472)
T 4g1t_A          206 PDNQ--YLKVLLALKLHKMREEGE----EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN  279 (472)
T ss_dssp             SSCH--HHHHHHHHHHHHCC----------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             Ccch--HHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence            9873  444444443333332211    1236999999999999999999999999999999999999999999999999


Q ss_pred             chhhhHHHHhHHHHHHHHHHHh------------------hccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHH
Q 036703          240 AEEKRYWQRYIYLWINYALYKE------------------VDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEME  301 (365)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  301 (365)
                      +..         ++..+|..+.                  ...+.++.|+..+++++...|...      ..+..+|.++
T Consensus       280 ~~~---------~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------~~~~~lg~~~  344 (472)
T 4g1t_A          280 NAY---------LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF------RVCSILASLH  344 (472)
T ss_dssp             CHH---------HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTC------CCHHHHHHHH
T ss_pred             hHH---------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh------hhhhhHHHHH
Confidence            854         4444444331                  012346788999999999885443      4558899999


Q ss_pred             HHhCCCccHHHHHHHHHhhCcchHH---HHHHHHHHH-hhccchhHHHHHHHHHhcCcCC
Q 036703          302 LCLGNIDPCRKLYEKYLEWSPENCY---AWSKYTELE-KSLDETERARAIFELAIAQPIL  357 (365)
Q Consensus       302 ~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~-~~~g~~~~A~~~~~~a~~~~~~  357 (365)
                      ...|++++|+..|+++++..|++..   ++..++.+. ...|+.++|+..|+++++..|.
T Consensus       345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~  404 (472)
T 4g1t_A          345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK  404 (472)
T ss_dssp             HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred             HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999887554   456666654 4679999999999999998873

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=5e-28  Score=205.19  Aligned_cols=259  Identities=8%  Similarity=0.006  Sum_probs=220.5

Q ss_pred             HHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhCCcchHHH
Q 036703           13 VTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNE-VQRARHIFERLVQCHPYNLSAW   90 (365)
Q Consensus        13 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~   90 (365)
                      +..+|++..+|..++.++...|++++|+..|+++++++|+ ..+|..++.++...|+ +++|+..|++++..+|++..+|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            4567888999999999999999999999999999999999 8999999999999996 9999999999999999999999


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHH
Q 036703           91 INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK  170 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~  170 (365)
                      ..+|.++...|++++|+..|+++++. .|.+    ..+|..+|.++.   ..|++++|+..|+++++.+|.+  ...|..
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~l-dP~~----~~a~~~lg~~~~---~~g~~~eAl~~~~~al~l~P~~--~~a~~~  239 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQ-DAKN----YHAWQHRQWVIQ---EFKLWDNELQYVDQLLKEDVRN--NSVWNQ  239 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHTCCTTHHHHHHHHHHHCTTC--HHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHh-CccC----HHHHHHHHHHHH---HcCChHHHHHHHHHHHHhCCCC--HHHHHH
Confidence            99999999999999999999999999 9998    999999999999   9999999999999999999987  678888


Q ss_pred             HHHHHHH-cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCchhhhHHH
Q 036703          171 FLAFEKQ-YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVG--NQERVREVYERAIANVPPAEEKRYWQ  247 (365)
Q Consensus       171 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~  247 (365)
                      ++.++.. .|..+..   ....++..|++++..+|++..+|..++.++...|  ++++|...++++ +..|++..     
T Consensus       240 lg~~l~~l~~~~~eA---~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~-----  310 (382)
T 2h6f_A          240 RYFVISNTTGYNDRA---VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPY-----  310 (382)
T ss_dssp             HHHHHHHTTCSCSHH---HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHH-----
T ss_pred             HHHHHHHhcCcchHH---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHH-----
Confidence            8888877 4442321   1223468999999999999999999999998888  689999999998 77888743     


Q ss_pred             HhHHHHHHHHHHHhhccC---------ChhHHHHHHHHH-HhccccCCCcchh-HHHHHHHHHHHH
Q 036703          248 RYIYLWINYALYKEVDAG---------DLERTRDVYRTL-FIFYFSFSPRMEE-RRIFKKYIEMEL  302 (365)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~a-~~~~~~~~~~~~~-~~~~~~~~~~~~  302 (365)
                          ++..++.++. ..|         .+++|+.+|+++ ++.+       |. ...|..++..+.
T Consensus       311 ----al~~La~~~~-~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-------P~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          311 ----LIAFLVDIYE-DMLENQCDNKEDILNKALELCEILAKEKD-------TIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             ----HHHHHHHHHH-HHHHTTCSSHHHHHHHHHHHHHHHHHTTC-------GGGHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHH-HHhcccccchHHHHHHHHHHHHHHHHHhC-------chhHHHHHHHHHHHH
Confidence                5666666652 432         246677777777 6666       43 555565555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.97  E-value=5.8e-28  Score=200.89  Aligned_cols=273  Identities=16%  Similarity=0.303  Sum_probs=225.3

Q ss_pred             CCCchHHHHHHHHHHHhc----CCh----hHHHHHHHHHHhhCCC-hHHHHHHHHHHHH-------hccH-------HHH
Q 036703           16 SPRVDQLWNNYIRMEENL----GNV----AGARQIFERWMHWMPD-HEGWLSYIKFKLR-------YNEV-------QRA   72 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~----g~~----~~A~~~~~~al~~~p~-~~~~~~~~~~~~~-------~~~~-------~~A   72 (365)
                      +|.....|..++.++.+.    ++.    ++|+..|++++..+|. +.+|..++.++..       .|++       ++|
T Consensus         4 ~~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A   83 (308)
T 2ond_A            4 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA   83 (308)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence            455678899999998875    343    6899999999999999 8999999998864       4775       899


Q ss_pred             HHHHHHHHH-hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHH-HHHHHHHHHHhccccchhHHHHH
Q 036703           73 RHIFERLVQ-CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQ-LFVAFAKFEEMGCNCKETDRARC  150 (365)
Q Consensus        73 ~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~  150 (365)
                      +.+|++++. .+|++..+|..+|.++...|++++|+.+|+++++. .|.+    +. +|..++.++.   +.|++++|+.
T Consensus        84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~~~~~~~~---~~~~~~~A~~  155 (308)
T 2ond_A           84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-EDID----PTLVYIQYMKFAR---RAEGIKSGRM  155 (308)
T ss_dssp             HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-SSSC----THHHHHHHHHHHH---HHHCHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-cccC----ccHHHHHHHHHHH---HhcCHHHHHH
Confidence            999999999 69999999999999999999999999999999999 8887    65 9999999999   9999999999


Q ss_pred             HHHHHhccCCCchhHHHHHHHHHHHHH-cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 036703          151 IYKFALDRIPKGRAEDLYRKFLAFEKQ-YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREV  229 (365)
Q Consensus       151 ~~~~~l~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~  229 (365)
                      +|+++++..|..  ..+|...+.++.. .|+.+        .|+.+|+++++.+|+++.+|..++.++...|++++|+.+
T Consensus       156 ~~~~a~~~~p~~--~~~~~~~a~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~  225 (308)
T 2ond_A          156 IFKKAREDARTR--HHVYVTAALMEYYCSKDKS--------VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL  225 (308)
T ss_dssp             HHHHHHTSTTCC--THHHHHHHHHHHHTSCCHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHhcCCCC--HHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999988876  5677777766544 56644        799999999999999999999999999999999999999


Q ss_pred             HHHHHhcC--CCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCC
Q 036703          230 YERAIANV--PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNI  307 (365)
Q Consensus       230 ~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (365)
                      |++++..+  |++..       ..+|..++.++ ...|+.+.|..+++++++..|+.....       ..+.+   ...+
T Consensus       226 ~~~al~~~~l~p~~~-------~~l~~~~~~~~-~~~g~~~~a~~~~~~a~~~~p~~~~~~-------~~~~~---~~r~  287 (308)
T 2ond_A          226 FERVLTSGSLPPEKS-------GEIWARFLAFE-SNIGDLASILKVEKRRFTAFREEYEGK-------ETALL---VDRY  287 (308)
T ss_dssp             HHHHHHSSSSCGGGC-------HHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHTTTTTSSC-------HHHHH---HTTT
T ss_pred             HHHHHhccCCCHHHH-------HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHcccccccc-------hHHHH---HHHH
Confidence            99999963  32211       34888899887 589999999999999999986543321       01111   1111


Q ss_pred             ccHHHHHHHHHhhCcchHHHHHHHH
Q 036703          308 DPCRKLYEKYLEWSPENCYAWSKYT  332 (365)
Q Consensus       308 ~~A~~~~~~al~~~p~~~~~~~~~~  332 (365)
                              +.+..+|+++.....+|
T Consensus       288 --------~~l~~~P~~~~~ln~lg  304 (308)
T 2ond_A          288 --------KFMDLYPCSASELKALG  304 (308)
T ss_dssp             --------CBTTBCSSCHHHHHTTT
T ss_pred             --------HhcccCCCCHHHHHhcC
Confidence                    55667899888776544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.96  E-value=4.8e-28  Score=205.29  Aligned_cols=256  Identities=11%  Similarity=0.065  Sum_probs=228.6

Q ss_pred             HhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc-hHHHHHHHHHHHhhhhcCChhh
Q 036703           47 MHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE-VDRARNVYECAVEIFLADDHDE  124 (365)
Q Consensus        47 l~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~  124 (365)
                      +..+|+ ..+|..++.++...|++++|+..|++++..+|++..+|..+|.++...|+ +++|+..|+++++. .|++   
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-~P~~---  165 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-QPKN---  165 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTC---
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-CCCC---
Confidence            345566 67899999999999999999999999999999999999999999999997 99999999999999 9998   


Q ss_pred             HHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC
Q 036703          125 AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP  204 (365)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p  204 (365)
                       ..+|..+|.++.   ..|++++|+..|+++++..|.+  ...|...+.++...|+.+        .|+..|+++++.+|
T Consensus       166 -~~a~~~~g~~~~---~~g~~~eAl~~~~kal~ldP~~--~~a~~~lg~~~~~~g~~~--------eAl~~~~~al~l~P  231 (382)
T 2h6f_A          166 -YQVWHHRRVLVE---WLRDPSQELEFIADILNQDAKN--YHAWQHRQWVIQEFKLWD--------NELQYVDQLLKEDV  231 (382)
T ss_dssp             -HHHHHHHHHHHH---HHTCCTTHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCCT--------THHHHHHHHHHHCT
T ss_pred             -HHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCccC--HHHHHHHHHHHHHcCChH--------HHHHHHHHHHHhCC
Confidence             999999999999   9999999999999999999997  678999999998999876        69999999999999


Q ss_pred             CCHHHHHHHHHHHHH-hCCHHHH-----HHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccC--ChhHHHHHHHH
Q 036703          205 MNYDTWFDYIRLEER-VGNQERV-----REVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAG--DLERTRDVYRT  276 (365)
Q Consensus       205 ~~~~~~~~~~~~~~~-~~~~~~A-----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~  276 (365)
                      ++..+|..+|.++.. .|..++|     +..|++++..+|.+..         +|..++.++ ...|  ++++|+..+.+
T Consensus       232 ~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~---------a~~~l~~ll-~~~g~~~~~~a~~~~~~  301 (382)
T 2h6f_A          232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES---------AWNYLKGIL-QDRGLSKYPNLLNQLLD  301 (382)
T ss_dssp             TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHH-TTTCGGGCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHH-HccCccchHHHHHHHHH
Confidence            999999999999998 5665888     5999999999999854         788888877 3666  68999999988


Q ss_pred             HHhccccCCCcchh-HHHHHHHHHHHHHhC---------CCccHHHHHHHH-HhhCcchHHHHHHHHHHHhhc
Q 036703          277 LFIFYFSFSPRMEE-RRIFKKYIEMELCLG---------NIDPCRKLYEKY-LEWSPENCYAWSKYTELEKSL  338 (365)
Q Consensus       277 a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~  338 (365)
                      + +..       |+ +..+..++.++.+.|         .+++|+++|+++ ++.+|.....|..++..+...
T Consensus       302 ~-~~~-------p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          302 L-QPS-------HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             H-TTT-------CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             h-ccC-------CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            7 555       44 678889999998874         258999999999 999999999999998877653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.96  E-value=1.3e-26  Score=203.45  Aligned_cols=321  Identities=15%  Similarity=0.139  Sum_probs=246.8

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhcc-HHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNE-VQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~A~~~~~~~   79 (365)
                      +++.|+.+|++++...|.               |+++.++.+|++++...|+..+|..|+.+..+.++ .+..+.+|+++
T Consensus        10 ~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a   74 (493)
T 2uy1_A           10 ELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT   74 (493)
T ss_dssp             --CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred             chHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            367899999999999998               78999999999999999999999999999998874 46788899999


Q ss_pred             HHh---CCcchHHHHHHHHHHH----hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhc----------ccc
Q 036703           80 VQC---HPYNLSAWINFADFEM----KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMG----------CNC  142 (365)
Q Consensus        80 l~~---~p~~~~~~~~~~~~~~----~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~  142 (365)
                      +..   +|.++.+|..++.++.    ..|+.+.++++|++++.. .+..   ...+|..+..+....          ...
T Consensus        75 l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~---~~~lw~~Y~~fE~~~~~~~~~~~~~~~~  150 (493)
T 2uy1_A           75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGS---LSELWKDFENFELELNKITGKKIVGDTL  150 (493)
T ss_dssp             HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTT---HHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhh---HHHHHHHHHHHHHHhccccHHHHHHHHh
Confidence            985   6788999999999976    467899999999999986 4332   367788777766400          022


Q ss_pred             chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Q 036703          143 KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGN  222 (365)
Q Consensus       143 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  222 (365)
                      +.+..|+.+|+.+....+.. ...+|..|+.++...+.... ......+...+|++++..+|.++.+|..++.++...|+
T Consensus       151 ~~y~~ar~~y~~~~~~~~~~-s~~~W~~y~~~E~~~~~~~~-~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~  228 (493)
T 2uy1_A          151 PIFQSSFQRYQQIQPLIRGW-SVKNAARLIDLEMENGMKLG-GRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQ  228 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC-SHHHHHHHHHHHHTCTTCCC-HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhcCCccCc-chhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence            34556677777666543331 25689999999875421100 00113356789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCchhhhH---------------H----------------HHhHHHHHHHHHHHhhccCChhHHH
Q 036703          223 QERVREVYERAIANVPPAEEKRY---------------W----------------QRYIYLWINYALYKEVDAGDLERTR  271 (365)
Q Consensus       223 ~~~A~~~~~~~~~~~p~~~~~~~---------------~----------------~~~~~~~~~~~~~~~~~~~~~~~a~  271 (365)
                      .++|+.+|++++.. |.+....+               .                .....+|+.|+.++ .+.++.+.|+
T Consensus       229 ~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~-~r~~~~~~AR  306 (493)
T 2uy1_A          229 KEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV-LKKRGLELFR  306 (493)
T ss_dssp             HHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHH-HHHHCHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH-HHcCCHHHHH
Confidence            99999999999999 87642110               0                01124688888886 4677899999


Q ss_pred             HHHHHHHhccccCCCcchhHHHHHHHHHHHHHhC-CCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHH
Q 036703          272 DVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLG-NIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFEL  350 (365)
Q Consensus       272 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  350 (365)
                      .+|+++ ... .     ....+|...+.++...+ +.+.|+.+|+++++..|+++..|..++.++...|+.++|+.+|++
T Consensus       307 ~i~~~A-~~~-~-----~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er  379 (493)
T 2uy1_A          307 KLFIEL-GNE-G-----VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKR  379 (493)
T ss_dssp             HHHHHH-TTS-C-----CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHh-hCC-C-----CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999 432 1     12567788888887766 599999999999998888888888888888888888888888887


Q ss_pred             H
Q 036703          351 A  351 (365)
Q Consensus       351 a  351 (365)
                      +
T Consensus       380 ~  380 (493)
T 2uy1_A          380 L  380 (493)
T ss_dssp             S
T ss_pred             H
Confidence            7

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.96  E-value=4.9e-27  Score=195.28  Aligned_cols=241  Identities=16%  Similarity=0.283  Sum_probs=207.1

Q ss_pred             CcchHHHHHHHHHHHhh----cch----HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc-------cchh---
Q 036703           84 PYNLSAWINFADFEMKM----GEV----DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN-------CKET---  145 (365)
Q Consensus        84 p~~~~~~~~~~~~~~~~----~~~----~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---  145 (365)
                      |.+...|..++.+..+.    ++.    ++|+..|++++.. .|.+    +.+|..++.++.   .       .|++   
T Consensus         5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~----~~~w~~~~~~~~---~~~~~l~~~g~~~~~   76 (308)
T 2ond_A            5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHH----PDIWYEAAQYLE---QSSKLLAEKGDMNNA   76 (308)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTC----HHHHHHHHHHHH---HHHHHHHHTSCCHHH
T ss_pred             HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH-cCCC----HHHHHHHHHHHH---Hhchhhhhccchhhc
Confidence            34566777777776653    222    6888899999998 8888    899999988876   4       3665   


Q ss_pred             ----HHHHHHHHHHhc-cCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHH
Q 036703          146 ----DRARCIYKFALD-RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD-TWFDYIRLEER  219 (365)
Q Consensus       146 ----~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~-~~~~~~~~~~~  219 (365)
                          ++|+.+|+++++ ..|.+  ..+|..++.++...|+.+        .|+.+|+++++..|.+.. +|..++.++..
T Consensus        77 ~~~~~~A~~~~~rAl~~~~p~~--~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  146 (308)
T 2ond_A           77 KLFSDEAANIYERAISTLLKKN--MLLYFAYADYEESRMKYE--------KVHSIYNRLLAIEDIDPTLVYIQYMKFARR  146 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHTSSSSCTHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhccccCccHHHHHHHHHHHH
Confidence                999999999999 57876  679999999999999855        799999999999999987 99999999999


Q ss_pred             hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHH
Q 036703          220 VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYI  298 (365)
Q Consensus       220 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~  298 (365)
                      .|++++|+..|+++++..|.+..         +|+..+.+.....|++++|+.+|+++++..       |+ +.+|..++
T Consensus       147 ~~~~~~A~~~~~~a~~~~p~~~~---------~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~  210 (308)
T 2ond_A          147 AEGIKSGRMIFKKAREDARTRHH---------VYVTAALMEYYCSKDKSVAFKIFELGLKKY-------GDIPEYVLAYI  210 (308)
T ss_dssp             HHCHHHHHHHHHHHHTSTTCCTH---------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-------TTCHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHH
Confidence            99999999999999999888743         666666663224799999999999999998       55 78999999


Q ss_pred             HHHHHhCCCccHHHHHHHHHhh---Ccc-hHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703          299 EMELCLGNIDPCRKLYEKYLEW---SPE-NCYAWSKYTELEKSLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       299 ~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                      .++...|++++|+.+|++++..   .|+ +..+|..++.++...|+.++|..+++++++..|.+
T Consensus       211 ~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~  274 (308)
T 2ond_A          211 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence            9999999999999999999995   564 78899999999999999999999999999999953

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.96  E-value=1.2e-26  Score=182.63  Aligned_cols=199  Identities=18%  Similarity=0.140  Sum_probs=175.3

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703           17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD   95 (365)
Q Consensus        17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~   95 (365)
                      |.++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            788999999999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHhh-----------cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh
Q 036703           96 FEMKM-----------GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA  164 (365)
Q Consensus        96 ~~~~~-----------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  164 (365)
                      ++...           |++++|+..|+++++. .|++    ..+|..+|.++.   ..|++++|+..|+++++.. .+  
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~P~~----~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~-~~--  150 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV-NPRY----APLHLQRGLVYA---LLGERDKAEASLKQALALE-DT--  150 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHC-CC--
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-Cccc----HHHHHHHHHHHH---HcCChHHHHHHHHHHHhcc-cc--
Confidence            99999           9999999999999999 9998    999999999999   9999999999999999988 43  


Q ss_pred             HHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 036703          165 EDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI  234 (365)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  234 (365)
                      ..++..++..+...|+.+        .|+..|+++++.+|+++.++..++.++...|++++|+..|+++-
T Consensus       151 ~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          151 PEIRSALAELYLSMGRLD--------EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             hHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            678999999999999866        69999999999999999999999999999999999999998864

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.95  E-value=5.2e-26  Score=185.84  Aligned_cols=257  Identities=10%  Similarity=-0.007  Sum_probs=165.7

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH----HHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS----AWINFA   94 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~~   94 (365)
                      ++.+..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|+++++ .|.++.    ++..+|
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence            455677777777777777777777777777777 56777777777777777777777777777 333433    377777


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703           95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF  174 (365)
Q Consensus        95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  174 (365)
                      .++...|++++|+..|+++++. .|.+    ..+|..+|.++.   ..|++++|+..|+++++..|.+            
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~-~~~~----~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~~~~~------------  141 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDR-DTTR----LDMYGQIGSYFY---NKGNFPLAIQYMEKQIRPTTTD------------  141 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-STTC----THHHHHHHHHHH---HTTCHHHHHHHHGGGCCSSCCC------------
T ss_pred             HHHHHcccHHHHHHHHHHHHhc-Cccc----HHHHHHHHHHHH---HccCHHHHHHHHHHHhhcCCCc------------
Confidence            7777777777777777777777 7766    677777777777   7777777777777777665554            


Q ss_pred             HHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHH
Q 036703          175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWI  254 (365)
Q Consensus       175 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  254 (365)
                                                      ..+|..+|......+++++|...|+++++..|.+..         .+.
T Consensus       142 --------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---------~~~  180 (272)
T 3u4t_A          142 --------------------------------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI---------GYL  180 (272)
T ss_dssp             --------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHH
T ss_pred             --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchH---------HHH
Confidence                                            333444442222223555555555555555554422         333


Q ss_pred             HHHHHHhhccCC---hhHHHHHHHHHHhccccCCCc-ch-hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHH
Q 036703          255 NYALYKEVDAGD---LERTRDVYRTLFIFYFSFSPR-ME-ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS  329 (365)
Q Consensus       255 ~~~~~~~~~~~~---~~~a~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  329 (365)
                      ..+..+ ...++   +++|+..|+++++........ -+ ...++..+|.++...|++++|+..|+++++.+|+++.++-
T Consensus       181 ~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~  259 (272)
T 3u4t_A          181 WRARAN-AAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAID  259 (272)
T ss_dssp             HHHHHH-HHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHH-HHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHH
Confidence            333333 23343   555555555555543111000 01 1467888999999999999999999999999999999998


Q ss_pred             HHHHHHhhcc
Q 036703          330 KYTELEKSLD  339 (365)
Q Consensus       330 ~~~~~~~~~g  339 (365)
                      .+..+....+
T Consensus       260 ~l~~~~~~~~  269 (272)
T 3u4t_A          260 GLKMKLEHHH  269 (272)
T ss_dssp             HHC-------
T ss_pred             Hhhhhhcccc
Confidence            8887765543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.95  E-value=1e-24  Score=191.35  Aligned_cols=312  Identities=14%  Similarity=0.185  Sum_probs=245.1

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC-hhHHHHHHHHHHhh---CCC-hHHHHHHHHHHH----HhccHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGN-VAGARQIFERWMHW---MPD-HEGWLSYIKFKL----RYNEVQR   71 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~---~p~-~~~~~~~~~~~~----~~~~~~~   71 (365)
                      +++.++.+|++++...| +.++|..++.+..+.++ .+..+..|++++..   +|. ..+|..++.++.    .+|+.+.
T Consensus        29 ~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~  107 (493)
T 2uy1_A           29 DYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK  107 (493)
T ss_dssp             CHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence            47899999999999999 58999999999998874 46788899999975   454 799999999975    4678999


Q ss_pred             HHHHHHHHHHhCCc-chHHHHHHHHHHHhh-------------cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           72 ARHIFERLVQCHPY-NLSAWINFADFEMKM-------------GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        72 A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~-------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      ++.+|++++...+. ...+|..+..+....             +.+..|+..|+.+... .+..   +..+|..++.+..
T Consensus       108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~-~~~~---s~~~W~~y~~~E~  183 (493)
T 2uy1_A          108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL-IRGW---SVKNAARLIDLEM  183 (493)
T ss_dssp             HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTC---SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHH-Hhhc---cHHHHHHHHHHHh
Confidence            99999999995332 246677777765442             3445567777777766 5431   2568988888876


Q ss_pred             hccccc-------hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHH
Q 036703          138 MGCNCK-------ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTW  210 (365)
Q Consensus       138 ~~~~~~-------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~  210 (365)
                         ..+       ..+++..+|++++..+|..  ..+|..|+.++...|+.+        .|+.+|++++.. |.+..+|
T Consensus       184 ---~~~~~~~~~~~~~Rv~~~ye~al~~~p~~--~~lW~~ya~~~~~~~~~~--------~ar~i~erAi~~-P~~~~l~  249 (493)
T 2uy1_A          184 ---ENGMKLGGRPHESRMHFIHNYILDSFYYA--EEVYFFYSEYLIGIGQKE--------KAKKVVERGIEM-SDGMFLS  249 (493)
T ss_dssp             ---TCTTCCCHHHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHH-CCSSHHH
T ss_pred             ---cCCccCcchhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhC-CCcHHHH
Confidence               431       1456788999999988876  689999999998888754        688999999988 8876555


Q ss_pred             HHHH----------------------------------------HHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhH
Q 036703          211 FDYI----------------------------------------RLEERVGNQERVREVYERAIANVPPAEEKRYWQRYI  250 (365)
Q Consensus       211 ~~~~----------------------------------------~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~  250 (365)
                      +.++                                        .++.+.++.+.|+.+|+++ . .|...        .
T Consensus       250 ~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~~--------~  319 (493)
T 2uy1_A          250 LYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGVG--------P  319 (493)
T ss_dssp             HHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCCC--------H
T ss_pred             HHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCCC--------h
Confidence            4444                                        3344567789999999999 4 34321        2


Q ss_pred             HHHHHHHHHHhhccC-ChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHH
Q 036703          251 YLWINYALYKEVDAG-DLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAW  328 (365)
Q Consensus       251 ~~~~~~~~~~~~~~~-~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  328 (365)
                      .+|+.++.++ ...+ +.+.|+.+|+.+++..       |+ +++|..+++++...|+.+.|+.+|+++    +.+..+|
T Consensus       320 ~v~i~~A~lE-~~~~~d~~~ar~ife~al~~~-------~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw  387 (493)
T 2uy1_A          320 HVFIYCAFIE-YYATGSRATPYNIFSSGLLKH-------PDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMW  387 (493)
T ss_dssp             HHHHHHHHHH-HHHHCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHH
T ss_pred             HHHHHHHHHH-HHHCCChHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHH
Confidence            3777777775 4444 7999999999999987       44 678889999999999999999999998    4579999


Q ss_pred             HHHHHHHhhccchhHHHHHHHHHhc
Q 036703          329 SKYTELEKSLDETERARAIFELAIA  353 (365)
Q Consensus       329 ~~~~~~~~~~g~~~~A~~~~~~a~~  353 (365)
                      ..+..++...|+.+.++++++++++
T Consensus       388 ~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          388 DSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999985

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.95  E-value=1.7e-25  Score=182.80  Aligned_cols=240  Identities=12%  Similarity=0.101  Sum_probs=193.9

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIF   76 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~   76 (365)
                      ++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++..++    ...|..+|.++...|++++|+..|
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~   97 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQY   97 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999994333    345999999999999999999999


Q ss_pred             HHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH-HHHHhccccchhHHHHHHHHHH
Q 036703           77 ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA-KFEEMGCNCKETDRARCIYKFA  155 (365)
Q Consensus        77 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~  155 (365)
                      +++++.+|+++.++..+|.++...|++++|+..|+++++. .|.+    +.+|..+| .++.    .+++++        
T Consensus        98 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~----~~~~~~l~~~~~~----~~~~~~--------  160 (272)
T 3u4t_A           98 QAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTD----PKVFYELGQAYYY----NKEYVK--------  160 (272)
T ss_dssp             HHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCC----HHHHHHHHHHHHH----TTCHHH--------
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCc----HHHHHHHHHHHHH----HHHHHH--------
Confidence            9999999999999999999999999999999999999999 9988    99999999 6655    334444        


Q ss_pred             hccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHH
Q 036703          156 LDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGN---QERVREVYER  232 (365)
Q Consensus       156 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~  232 (365)
                                                          |+..|+++++.+|++..++..++.++...|+   +++|...|++
T Consensus       161 ------------------------------------A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  204 (272)
T 3u4t_A          161 ------------------------------------ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK  204 (272)
T ss_dssp             ------------------------------------HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred             ------------------------------------HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence                                                5555555556666666777777777777777   8888999998


Q ss_pred             HHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHH
Q 036703          233 AIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEME  301 (365)
Q Consensus       233 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  301 (365)
                      +++.....+... -...+.++..++.++ ...|++++|+..|+++++..|+.      +..+..++.+.
T Consensus       205 a~~~~~~~~~~~-~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~  265 (272)
T 3u4t_A          205 LIEVCAPGGAKY-KDELIEANEYIAYYY-TINRDKVKADAAWKNILALDPTN------KKAIDGLKMKL  265 (272)
T ss_dssp             HHHHHGGGGGGG-HHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHC---
T ss_pred             HHHHHhcccccc-hHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCccH------HHHHHHhhhhh
Confidence            888753222111 111245777888887 58999999999999999998432      44555444443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.95  E-value=1.8e-25  Score=183.62  Aligned_cols=274  Identities=9%  Similarity=0.023  Sum_probs=168.3

Q ss_pred             HHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHH
Q 036703           29 MEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRA  106 (365)
Q Consensus        29 ~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A  106 (365)
                      -....|++.+|+..++++...+|+  ......++..+...|+++.|+..++.   .+|.+..++..++.++...|+.++|
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A   84 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI   84 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence            344556666666666666555555  23445556666666666666665544   2444555666666666666666666


Q ss_pred             HHHHHHHHhhh-hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhh
Q 036703          107 RNVYECAVEIF-LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE  185 (365)
Q Consensus       107 ~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  185 (365)
                      ++.+++++... .|++    +.++..+|.++.   ..|++++|+..|++     |.+  ...+...+.++...|+.+   
T Consensus        85 ~~~l~~ll~~~~~P~~----~~~~~~la~~~~---~~g~~~~Al~~l~~-----~~~--~~~~~~l~~~~~~~g~~~---  147 (291)
T 3mkr_A           85 VAELDREMSRSVDVTN----TTFLLMAASIYF---YDQNPDAALRTLHQ-----GDS--LECMAMTVQILLKLDRLD---  147 (291)
T ss_dssp             HHHHHHHHHSCCCCSC----HHHHHHHHHHHH---HTTCHHHHHHHHTT-----CCS--HHHHHHHHHHHHHTTCHH---
T ss_pred             HHHHHHHHhcccCCCC----HHHHHHHHHHHH---HCCCHHHHHHHHhC-----CCC--HHHHHHHHHHHHHCCCHH---
Confidence            66666666541 2555    666666666666   66666666666665     333  455666666666666644   


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703          186 DAIAGKMRLQYEDGVRKNPMNYDTWFD--YIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD  263 (365)
Q Consensus       186 ~~~~~~a~~~~~~~l~~~p~~~~~~~~--~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  263 (365)
                           .|...|+++++.+|++......  +..+....|++++|..+|+++++..|+++         .++...|.++ ..
T Consensus       148 -----~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~---------~~~~~la~~~-~~  212 (291)
T 3mkr_A          148 -----LARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL---------LLLNGQAACH-MA  212 (291)
T ss_dssp             -----HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH---------HHHHHHHHHH-HH
T ss_pred             -----HHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHH-HH
Confidence                 4666666666666666433322  22333445667777777777777766653         2566666665 46


Q ss_pred             cCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCcc-HHHHHHHHHhhCcchHHHHHHHHHHHhhccch
Q 036703          264 AGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDP-CRKLYEKYLEWSPENCYAWSKYTELEKSLDET  341 (365)
Q Consensus       264 ~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~  341 (365)
                      .|++++|+..|++++...       |+ ++.+..+|.++...|+.++ +..+++++++.+|+++.+.    .+..+.+.+
T Consensus       213 ~g~~~eA~~~l~~al~~~-------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~f  281 (291)
T 3mkr_A          213 QGRWEAAEGVLQEALDKD-------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDF  281 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHH
Confidence            677777777777777766       43 5566777777777777754 4577777777777777654    345555666


Q ss_pred             hHHHHHH
Q 036703          342 ERARAIF  348 (365)
Q Consensus       342 ~~A~~~~  348 (365)
                      +++..-|
T Consensus       282 d~~~~~~  288 (291)
T 3mkr_A          282 DRLVLQY  288 (291)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            6665544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.4e-25  Score=177.06  Aligned_cols=242  Identities=12%  Similarity=0.015  Sum_probs=209.7

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCCh---hhHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH---DEAEQLF  129 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~  129 (365)
                      ...|..+|..+...|++++|...|+++++.+ +++.++..+|.++...|++++|+..++++++. .|...   +....++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ-GREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CcccccchHHHHHHH
Confidence            4577888899999999999999999999988 78999999999999999999999999999998 76531   1226899


Q ss_pred             HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703          130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT  209 (365)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~  209 (365)
                      ..+|.++.   ..|++++|+..|+++++..|..   .++...       |+        .++|...+++++..+|.+..+
T Consensus        83 ~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~---~~~~~~-------~~--------~~~a~~~~~~~~~~~~~~~~~  141 (258)
T 3uq3_A           83 ARIGNAYH---KLGDLKKTIEYYQKSLTEHRTA---DILTKL-------RN--------AEKELKKAEAEAYVNPEKAEE  141 (258)
T ss_dssp             HHHHHHHH---HTTCHHHHHHHHHHHHHHCCCH---HHHHHH-------HH--------HHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHH---HcccHHHHHHHHHHHHhcCchh---HHHHHH-------hH--------HHHHHHHHHHHHHcCcchHHH
Confidence            99999999   9999999999999999988873   233322       22        236899999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcch
Q 036703          210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRME  289 (365)
Q Consensus       210 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~  289 (365)
                      +..+|.++...|++++|...|++++...|.+..         ++..++..+ ...|++++|+..++++++..       |
T Consensus       142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~-~~~~~~~~A~~~~~~al~~~-------~  204 (258)
T 3uq3_A          142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---------GYSNRAAAL-AKLMSFPEAIADCNKAIEKD-------P  204 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH-HHTTCHHHHHHHHHHHHHHC-------T
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH---------HHHHHHHHH-HHhCCHHHHHHHHHHHHHhC-------H
Confidence            999999999999999999999999999998753         778888887 68999999999999999987       5


Q ss_pred             h-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhC------cchHHHHHHHHHH
Q 036703          290 E-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWS------PENCYAWSKYTEL  334 (365)
Q Consensus       290 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~  334 (365)
                      + +..+..+|.++...|++++|...|+++++.+      |++..++..+..+
T Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            5 7788999999999999999999999999998      8888888877654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.94  E-value=1.1e-24  Score=178.91  Aligned_cols=246  Identities=12%  Similarity=-0.022  Sum_probs=139.3

Q ss_pred             hhhHHHHHHHHHHhCCCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRV-DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      |+.|+..++++...+|++ ......+++.+...|+++.|+..++..   +|. ..++..++.++...|+.++|+..++++
T Consensus        15 y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~~a~~~la~~~~~~~~~~~A~~~l~~l   91 (291)
T 3mkr_A           15 YQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPELQAVRMFAEYLASHSRRDAIVAELDRE   91 (291)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            455555555555555554 234555566666666666666555431   222 345555556666666666666666666


Q ss_pred             HHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703           80 VQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus        80 l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      +..  +|+++.++..+|.++...|++++|++.+++      |.+    ..++..++.++.   ..|++++|+..|+++++
T Consensus        92 l~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~----~~~~~~l~~~~~---~~g~~~~A~~~l~~~~~  158 (291)
T 3mkr_A           92 MSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDS----LECMAMTVQILL---KLDRLDLARKELKKMQD  158 (291)
T ss_dssp             HHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCS----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred             HhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCC----HHHHHHHHHHHH---HCCCHHHHHHHHHHHHh
Confidence            554  466666666666666666666666666654      333    556666666666   66666666666666666


Q ss_pred             cCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 036703          158 RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANV  237 (365)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  237 (365)
                      ..|......+...+..+....|.        .++|...|+++++.+|+++.+|..+|.++...|++++|...|++++..+
T Consensus       159 ~~p~~~~~~l~~a~~~l~~~~~~--------~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          159 QDEDATLTQLATAWVSLAAGGEK--------LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HCTTCHHHHHHHHHHHHHHCTTH--------HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hCcCcHHHHHHHHHHHHHhCchH--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            65554222222223333322232        2246666666666666666666666666666666666666666666666


Q ss_pred             CCchhhhHHHHhHHHHHHHHHHHhhccCChhH-HHHHHHHHHhcc
Q 036703          238 PPAEEKRYWQRYIYLWINYALYKEVDAGDLER-TRDVYRTLFIFY  281 (365)
Q Consensus       238 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~a~~~~  281 (365)
                      |.++.         ++.+++.++ ...|+.++ +..+++++++..
T Consensus       231 p~~~~---------~l~~l~~~~-~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          231 SGHPE---------TLINLVVLS-QHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             TTCHH---------HHHHHHHHH-HHTTCCHHHHHHHHHHHHHHC
T ss_pred             CCCHH---------HHHHHHHHH-HHcCCCHHHHHHHHHHHHHhC
Confidence            66543         555555554 35555543 455666666665

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.94  E-value=1.8e-25  Score=193.27  Aligned_cols=309  Identities=12%  Similarity=0.008  Sum_probs=253.8

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCc
Q 036703           17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQC------HPY   85 (365)
Q Consensus        17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~   85 (365)
                      +.....+...|..+...|++++|+..|+++++..|.     ..+|..++.++...|++++|...+++++..      .|.
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            344677899999999999999999999999999988     257889999999999999999999999886      445


Q ss_pred             chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccch-------------------
Q 036703           86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKE-------------------  144 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------------------  144 (365)
                      ...++..+|.++...|++++|+..++++++. .|..  ......++..+|.++.   ..|+                   
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~~~~~~~~~~~a~~  161 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDI-SRELNDKVGEARALYNLGNVYH---AKGKSFGCPGPQDVGEFPEEVRD  161 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHH---HHHHTCC-------CCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhcccccchHHHHHHHHHHHH---HcCCcccccccchhhhhhhhHHH
Confidence            5778999999999999999999999999998 6542  2233568899999999   9999                   


Q ss_pred             -hHHHHHHHHHHhccCCC----chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH------HHHHH
Q 036703          145 -TDRARCIYKFALDRIPK----GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD------TWFDY  213 (365)
Q Consensus       145 -~~~A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~------~~~~~  213 (365)
                       +++|+..+++++...+.    ......+..++.++...|+++        .|+..+++++...|....      ++..+
T Consensus       162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~l  233 (406)
T 3sf4_A          162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR--------DAVIAHEQRLLIAKEFGDKAAERRAYSNL  233 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHH--------HHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence             99999999999875321    113557778888888888865        699999999987655433      88999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HH
Q 036703          214 IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RR  292 (365)
Q Consensus       214 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~  292 (365)
                      |.++...|++++|...+++++...|......   ....++..++.++ ...|++++|+..+++++...+..... +. ..
T Consensus       234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~-~~~~~  308 (406)
T 3sf4_A          234 GNAYIFLGEFETASEYYKKTLLLARQLKDRA---VEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELNDR-IGEGR  308 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhCcCch---HHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHhcCCc-HHHHH
Confidence            9999999999999999999998755432110   1144677788887 69999999999999999986544332 22 67


Q ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHhhC------cchHHHHHHHHHHHhhccchh
Q 036703          293 IFKKYIEMELCLGNIDPCRKLYEKYLEWS------PENCYAWSKYTELEKSLDETE  342 (365)
Q Consensus       293 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~g~~~  342 (365)
                      .+..++.++...|++++|...|+++++..      +....++..++.++...|+..
T Consensus       309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            88899999999999999999999999883      334678899999999999763

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.7e-24  Score=175.23  Aligned_cols=229  Identities=8%  Similarity=-0.015  Sum_probs=208.8

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-------hHHH
Q 036703           18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN-------LSAW   90 (365)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~   90 (365)
                      +.+..|..+|.++...|++++|+..|+++++.+++..+|..++.++...|++++|...++++++..|++       +.++
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            457789999999999999999999999999988448899999999999999999999999999999876       7899


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHH
Q 036703           91 INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK  170 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~  170 (365)
                      ..+|.++...|++++|+..|+++++. .|.            +.++.   ..|++++|+..+++++...|..  ..++..
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~------------~~~~~---~~~~~~~a~~~~~~~~~~~~~~--~~~~~~  144 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTE-HRT------------ADILT---KLRNAEKELKKAEAEAYVNPEK--AEEARL  144 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-CCC------------HHHHH---HHHHHHHHHHHHHHHHHCCHHH--HHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc-Cch------------hHHHH---HHhHHHHHHHHHHHHHHcCcch--HHHHHH
Confidence            99999999999999999999999999 765            23466   7899999999999999988775  678888


Q ss_pred             HHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhH
Q 036703          171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYI  250 (365)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~  250 (365)
                      ++..+...|+.+        .|+..|++++..+|.+..++..+|.++...|++++|...|+++++..|.+..        
T Consensus       145 ~~~~~~~~~~~~--------~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------  208 (258)
T 3uq3_A          145 EGKEYFTKSDWP--------NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR--------  208 (258)
T ss_dssp             HHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------
T ss_pred             HHHHHHHhcCHH--------HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH--------
Confidence            999999999866        7999999999999999999999999999999999999999999999999753        


Q ss_pred             HHHHHHHHHHhhccCChhHHHHHHHHHHhccc
Q 036703          251 YLWINYALYKEVDAGDLERTRDVYRTLFIFYF  282 (365)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~  282 (365)
                       .+..++..+ ...|++++|+..|+++++..|
T Consensus       209 -~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~  238 (258)
T 3uq3_A          209 -AYIRKATAQ-IAVKEYASALETLDAARTKDA  238 (258)
T ss_dssp             -HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHH-HHHhhHHHHHHHHHHHHHhCh
Confidence             788888887 599999999999999999873

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.94  E-value=8.5e-25  Score=172.07  Aligned_cols=198  Identities=16%  Similarity=0.094  Sum_probs=172.6

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF  132 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  132 (365)
                      ...|..++..+...|++++|+..|+++++.+|+++.++..+|.++.+.|++++|+..|+++++. .|++    ..++..+
T Consensus         5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~----~~a~~~l   79 (217)
T 2pl2_A            5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-TPRY----LGGYMVL   79 (217)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc----HHHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999 9998    9999999


Q ss_pred             HHHHHhcccc-----------chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH
Q 036703          133 AKFEEMGCNC-----------KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR  201 (365)
Q Consensus       133 ~~~~~~~~~~-----------~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~  201 (365)
                      |.++.   ..           |++++|+..|+++++..|.+  ...|..++.++...|+.+        +|+..|+++++
T Consensus        80 g~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~  146 (217)
T 2pl2_A           80 SEAYV---ALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--APLHLQRGLVYALLGERD--------KAEASLKQALA  146 (217)
T ss_dssp             HHHHH---HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHH
T ss_pred             HHHHH---HhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--HHHHHHHHHHHHHcCChH--------HHHHHHHHHHh
Confidence            99999   99           99999999999999999987  678999999999999866        79999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHh
Q 036703          202 KNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFI  279 (365)
Q Consensus       202 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~  279 (365)
                      .+ +++.++..+|.++...|++++|+..|+++++..|++..         ++..++.++ ...|++++|+..|+++-.
T Consensus       147 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~---------~~~~la~~~-~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          147 LE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD---------LRVRYASAL-LLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHH-TC----------------
T ss_pred             cc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHH-HHccCHHHHHHHHHHHhh
Confidence            99 99999999999999999999999999999999999854         778888887 699999999999988754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.94  E-value=7.5e-23  Score=181.22  Aligned_cols=309  Identities=11%  Similarity=-0.053  Sum_probs=191.2

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHh----cCChhHHHHHHHHHHhhCCChHHHHHHHHHHHH----hccHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEEN----LGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR----YNEVQRA   72 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A   72 (365)
                      ++++|+..|+++.+.  .++.++..+|.++..    .+++++|+..|+++.+.. ++..+..++.++..    .+++++|
T Consensus        58 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A  134 (490)
T 2xm6_A           58 DLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAES  134 (490)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            345666666666654  345566666666666    666666666666665532 24555556666555    5566666


Q ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHh----hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc----cch
Q 036703           73 RHIFERLVQCHPYNLSAWINFADFEMK----MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN----CKE  144 (365)
Q Consensus        73 ~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  144 (365)
                      ...|+++...  +++..+..+|.++..    .+++++|++.|+++++. .  +    +..+..++.++.   .    .++
T Consensus       135 ~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~--~----~~a~~~Lg~~y~---~g~g~~~~  202 (490)
T 2xm6_A          135 VKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-G--N----VWSCNQLGYMYS---RGLGVERN  202 (490)
T ss_dssp             HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T--C----HHHHHHHHHHHH---HTSSSCCC
T ss_pred             HHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C--C----HHHHHHHHHHHh---cCCCCCcC
Confidence            6666665543  345555566665555    45556666666655544 1  2    444455555554   4    444


Q ss_pred             hHHHHHHHHHHhccCCCc--------------------------------hhHHHHHHHHHHHHH----cCCchhhhHHH
Q 036703          145 TDRARCIYKFALDRIPKG--------------------------------RAEDLYRKFLAFEKQ----YGDREGIEDAI  188 (365)
Q Consensus       145 ~~~A~~~~~~~l~~~p~~--------------------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~  188 (365)
                      +++|+.+|+++++..+..                                .....+..++.++..    .++        
T Consensus       203 ~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d--------  274 (490)
T 2xm6_A          203 DAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKE--------  274 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCC--------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC--------
Confidence            444444444444321110                                002233333333332    222        


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703          189 AGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV-----GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD  263 (365)
Q Consensus       189 ~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  263 (365)
                      .++|+..|+++.+.  .++.++..++.++...     +++++|...|+++.+..+..           .+..++.++. .
T Consensus       275 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~-----------a~~~lg~~y~-~  340 (490)
T 2xm6_A          275 PLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDAT-----------AQANLGAIYF-R  340 (490)
T ss_dssp             HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHH-----------HHHHHHHHHH-h
Confidence            23566777776654  4566777777777665     67777777777777653322           5556666653 3


Q ss_pred             cC---ChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH----hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703          264 AG---DLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC----LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK  336 (365)
Q Consensus       264 ~~---~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  336 (365)
                      .|   ++++|+..|+++++.        .++..+..++.++..    .+++++|..+|+++++..  ++.++..++.++.
T Consensus       341 ~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~  410 (490)
T 2xm6_A          341 LGSEEEHKKAVEWFRKAAAK--------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYY  410 (490)
T ss_dssp             SCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence            34   678888888888876        346678888888888    789999999999998764  6888899999998


Q ss_pred             h----ccchhHHHHHHHHHhcCcC
Q 036703          337 S----LDETERARAIFELAIAQPI  356 (365)
Q Consensus       337 ~----~g~~~~A~~~~~~a~~~~~  356 (365)
                      .    .++.++|...|+++++..|
T Consensus       411 ~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          411 YGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCCHHHHHHHHHHHHHCCC
Confidence            8    7899999999999998874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.94  E-value=1.6e-22  Score=179.17  Aligned_cols=311  Identities=8%  Similarity=-0.085  Sum_probs=214.7

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHh----cCChhHHHHHHHHHHhhCCChHHHHHHHHHHHH----hccHHHHHHHH
Q 036703            5 GRNAWDRVVTLSPRVDQLWNNYIRMEEN----LGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR----YNEVQRARHIF   76 (365)
Q Consensus         5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A~~~~   76 (365)
                      +...++++.  .+.++.++..+|.++..    .+++++|+..|+++.+. .+..++..++.++..    .+++++|...|
T Consensus        26 ~~~~~~~~a--~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~  102 (490)
T 2xm6_A           26 NLEQLKQKA--ESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWY  102 (490)
T ss_dssp             CHHHHHHHH--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            455666555  46778999999999999    99999999999999986 347889999999998    89999999999


Q ss_pred             HHHHHhCCcchHHHHHHHHHHHh----hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc----cchhHHH
Q 036703           77 ERLVQCHPYNLSAWINFADFEMK----MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN----CKETDRA  148 (365)
Q Consensus        77 ~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A  148 (365)
                      +++.+.  .++..+..+|.++..    .+++++|+..|+++.+. .  +    +..+..+|.++.   .    .+++++|
T Consensus       103 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~--~----~~a~~~Lg~~y~---~g~g~~~d~~~A  170 (490)
T 2xm6_A          103 KKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-G--R----DSGQQSMGDAYF---EGDGVTRDYVMA  170 (490)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T--C----HHHHHHHHHHHH---HTSSSCCCHHHH
T ss_pred             HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C--C----HHHHHHHHHHHH---cCCCCCCCHHHH
Confidence            999875  478899999999998    78999999999999876 2  3    788999999998   7    7899999


Q ss_pred             HHHHHHHhccCCCchhHHHHHHHHHHHHH----cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----h
Q 036703          149 RCIYKFALDRIPKGRAEDLYRKFLAFEKQ----YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER----V  220 (365)
Q Consensus       149 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~----~  220 (365)
                      +..|+++++..  +  ...+..++.++..    .++.+        +|...|+++.+.  .++.++..++.++..    .
T Consensus       171 ~~~~~~a~~~~--~--~~a~~~Lg~~y~~g~g~~~~~~--------~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~  236 (490)
T 2xm6_A          171 REWYSKAAEQG--N--VWSCNQLGYMYSRGLGVERNDA--------ISAQWYRKSATS--GDELGQLHLADMYYFGIGVT  236 (490)
T ss_dssp             HHHHHHHHHTT--C--HHHHHHHHHHHHHTSSSCCCHH--------HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred             HHHHHHHHHCC--C--HHHHHHHHHHHhcCCCCCcCHH--------HHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCC
Confidence            99999999852  2  4566777776665    44433        466666666553  345555555655554    5


Q ss_pred             CCHHHHHHHHHHHHhcCCCchhhh--------------------HHH-----HhHHHHHHHHHHHhhcc-----CChhHH
Q 036703          221 GNQERVREVYERAIANVPPAEEKR--------------------YWQ-----RYIYLWINYALYKEVDA-----GDLERT  270 (365)
Q Consensus       221 ~~~~~A~~~~~~~~~~~p~~~~~~--------------------~~~-----~~~~~~~~~~~~~~~~~-----~~~~~a  270 (365)
                      +++++|+..|++++...+......                    .+.     .....+..++.++. ..     +++++|
T Consensus       237 ~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~-~~~~g~~~~~~~A  315 (490)
T 2xm6_A          237 QDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYD-KGAEGVAKNREQA  315 (490)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HCBTTBCCCHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-cCCCCCcCCHHHH
Confidence            555666666655554422110000                    000     00113334444442 22     455666


Q ss_pred             HHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhC---CCccHHHHHHHHHhhCcchHHHHHHHHHHHhh----ccchhH
Q 036703          271 RDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLG---NIDPCRKLYEKYLEWSPENCYAWSKYTELEKS----LDETER  343 (365)
Q Consensus       271 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~  343 (365)
                      +..|+++++..        .+..+..++.++...|   ++++|..+|+++++.  .++.++..++.++..    .+++++
T Consensus       316 ~~~~~~a~~~~--------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~  385 (490)
T 2xm6_A          316 ISWYTKSAEQG--------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQ  385 (490)
T ss_dssp             HHHHHHHHHTT--------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHhcC--------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            66666655542        2345556666665544   566777777777665  356677777777776    667777


Q ss_pred             HHHHHHHHhcCc
Q 036703          344 ARAIFELAIAQP  355 (365)
Q Consensus       344 A~~~~~~a~~~~  355 (365)
                      |...|+++++..
T Consensus       386 A~~~~~~A~~~~  397 (490)
T 2xm6_A          386 AAIWMRKAAEQG  397 (490)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC
Confidence            777777776643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.93  E-value=5.3e-24  Score=184.52  Aligned_cols=291  Identities=11%  Similarity=0.005  Sum_probs=236.2

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h----HHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCcc
Q 036703           18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H----EGWLSYIKFKLRYNEVQRARHIFERLVQC------HPYN   86 (365)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~----~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~   86 (365)
                      .....+..+|..+...|++++|+..|+++++..|+ .    .+|..++.++...|++++|...|++++..      .|..
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            34556778999999999999999999999999998 2    57889999999999999999999999987      5777


Q ss_pred             hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccch-----------------hHH
Q 036703           87 LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKE-----------------TDR  147 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~  147 (365)
                      ..++..+|.++...|++++|+..|+++++. .+..  .+....++..+|.++.   ..|+                 +++
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~~~~~~~~~~a~~~~~~  201 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTL-ARQLGDRLSEGRALYNLGNVYH---AKGKHLGQRNPGKFGDDVKEALTR  201 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHH---HHHHHHHHHSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHhhchHHHHHHHHHHHHHHH---HcCcccccccchhhhhhhhHHHHH
Confidence            889999999999999999999999999987 5421  2445778999999999   9999                 999


Q ss_pred             HHHHHHHHhccCCC----chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHH
Q 036703          148 ARCIYKFALDRIPK----GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD------TWFDYIRLE  217 (365)
Q Consensus       148 A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~------~~~~~~~~~  217 (365)
                      |+..+++++...+.    ......+..++.++...|+.+        +|+..|++++...|....      ++..++.++
T Consensus       202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  273 (411)
T 4a1s_A          202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ--------AAIEHHQERLRIAREFGDRAAERRANSNLGNSH  273 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            99999998875322    113457777888888888865        688999999887665433      788999999


Q ss_pred             HHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHH
Q 036703          218 ERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKY  297 (365)
Q Consensus       218 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~  297 (365)
                      ...|++++|...|++++...+......   ....++..++.++ ...|++++|+..+++++...+...........+..+
T Consensus       274 ~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  349 (411)
T 4a1s_A          274 IFLGQFEDAAEHYKRTLALAVELGERE---VEAQSCYSLGNTY-TLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSL  349 (411)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            999999999999999998765431110   1134677788887 589999999999999998854332210115678889


Q ss_pred             HHHHHHhCCCccHHHHHHHHHhhCcch
Q 036703          298 IEMELCLGNIDPCRKLYEKYLEWSPEN  324 (365)
Q Consensus       298 ~~~~~~~~~~~~A~~~~~~al~~~p~~  324 (365)
                      +.++...|++++|...|+++++..+..
T Consensus       350 a~~~~~~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          350 GNAHSAIGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999987743

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.93  E-value=9.4e-24  Score=182.47  Aligned_cols=296  Identities=8%  Similarity=-0.029  Sum_probs=240.1

Q ss_pred             ChhhHHHHHHHHHHhCCCch----HHHHHHHHHHHhcCChhHHHHHHHHHHhhC------CC-hHHHHHHHHHHHHhccH
Q 036703            1 FIDHGRNAWDRVVTLSPRVD----QLWNNYIRMEENLGNVAGARQIFERWMHWM------PD-HEGWLSYIKFKLRYNEV   69 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~-~~~~~~~~~~~~~~~~~   69 (365)
                      ++++|+..|++++...|+++    .+|..+|.++...|++++|+..|++++...      |. ..++..++.++...|++
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  103 (406)
T 3sf4_A           24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNF  103 (406)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCH
Confidence            57899999999999999984    678999999999999999999999998763      22 56888999999999999


Q ss_pred             HHHHHHHHHHHHhCCcc------hHHHHHHHHHHHhhcc--------------------hHHHHHHHHHHHhhhhcCC--
Q 036703           70 QRARHIFERLVQCHPYN------LSAWINFADFEMKMGE--------------------VDRARNVYECAVEIFLADD--  121 (365)
Q Consensus        70 ~~A~~~~~~~l~~~p~~------~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~a~~~~~~~~--  121 (365)
                      ++|...+++++...|..      ..++..+|.++...|+                    +++|+..+++++.. .+..  
T Consensus       104 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~-~~~~~~  182 (406)
T 3sf4_A          104 DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL-VTALGD  182 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH-HHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH-HHhccC
Confidence            99999999999987654      4589999999999999                    99999999999886 4321  


Q ss_pred             hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHH
Q 036703          122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYE  197 (365)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  197 (365)
                      .+....++..+|.++.   ..|++++|+..|+++++..|...    ....+..++.++...|+.+        +|...++
T Consensus       183 ~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~  251 (406)
T 3sf4_A          183 RAAQGRAFGNLGNTHY---LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE--------TASEYYK  251 (406)
T ss_dssp             HHHHHHHHHHHHHHHH---HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH--------HHHHHHH
Confidence            2444678999999999   99999999999999998654422    2347778888888999866        6999999


Q ss_pred             HHHHcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHH
Q 036703          198 DGVRKNPMN------YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTR  271 (365)
Q Consensus       198 ~~l~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  271 (365)
                      +++...|..      ..++..+|.++...|++++|...|++++...+.....   .....++..++.++ ...|++++|+
T Consensus       252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~-~~~g~~~~A~  327 (406)
T 3sf4_A          252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR---IGEGRACWSLGNAY-TALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHH-HHHTCHHHHH
T ss_pred             HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHH-HHcCCHHHHH
Confidence            999876655      6788999999999999999999999999874432210   01144777788887 5899999999


Q ss_pred             HHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHH
Q 036703          272 DVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKL  313 (365)
Q Consensus       272 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~  313 (365)
                      ..++++++..+..... +. ...+..++.++...|+...+...
T Consensus       328 ~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~  369 (406)
T 3sf4_A          328 HFAEKHLEISREVGDK-SGELTARLNLSDLQMVLGLSYSTNNS  369 (406)
T ss_dssp             HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred             HHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhhHhHHHHHH
Confidence            9999999985544332 22 67788899999999887554333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.93  E-value=1.1e-23  Score=177.03  Aligned_cols=286  Identities=12%  Similarity=0.014  Sum_probs=178.6

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCcchH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQC------HPYNLS   88 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~   88 (365)
                      ...+...|..+...|++++|+..|+++++..|+     ..++..++.++...|++++|...+++++..      .|....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            456788899999999999999999999999988     257888999999999999999999999886      445578


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccch--------------------hH
Q 036703           89 AWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKE--------------------TD  146 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------------------~~  146 (365)
                      ++..+|.++...|++++|+..++++++. .+..  ......++..++.++.   ..|+                    ++
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDI-SRELNDKVGEARALYNLGNVYH---AKGKSFGCPGPQDTGEFPEDVRNALQ  160 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH---HHHHTSSSSSCC----CCHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH-HHHhcCchHHHHHHHHHHHHHH---HcCcccccchhhhhhhhhhhHHHHHH
Confidence            8999999999999999999999999988 6543  2233558889999999   9999                    88


Q ss_pred             HHHHHHHHHhccCCC----chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHH
Q 036703          147 RARCIYKFALDRIPK----GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN------YDTWFDYIRL  216 (365)
Q Consensus       147 ~A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~------~~~~~~~~~~  216 (365)
                      +|+..+++++...+.    ......+..++.++...|+.+        .|+..+++++...|..      ..++..++.+
T Consensus       161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~  232 (338)
T 3ro2_A          161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR--------DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA  232 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            888888777654221    111234444455555555533        3555555555433221      1245555555


Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHH
Q 036703          217 EERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKK  296 (365)
Q Consensus       217 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~  296 (365)
                      +...|++++|...+++++...+......   ....++..++.++ ...|++++|+..+++++...+...........+..
T Consensus       233 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  308 (338)
T 3ro2_A          233 YIFLGEFETASEYYKKTLLLARQLKDRA---VEAQSCYSLGNTY-TLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS  308 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhhcchh---HHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            5555555555555555554432211000   0122333444444 34555555555555555443221110000233444


Q ss_pred             HHHHHHHhCCCccHHHHHHHHHhhC
Q 036703          297 YIEMELCLGNIDPCRKLYEKYLEWS  321 (365)
Q Consensus       297 ~~~~~~~~~~~~~A~~~~~~al~~~  321 (365)
                      ++.++...|++++|...|+++++..
T Consensus       309 la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          309 LGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHH
Confidence            4444444444444444444444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.93  E-value=2.9e-23  Score=167.49  Aligned_cols=211  Identities=11%  Similarity=0.043  Sum_probs=196.9

Q ss_pred             HhCCCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHH
Q 036703           14 TLSPRV-DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI   91 (365)
Q Consensus        14 ~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   91 (365)
                      ..+|.+ +.+|..+|.++...|++++|+..|+++++..|. ..+|..++.++...|++++|...|+++++.+|.+..++.
T Consensus        30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  109 (252)
T 2ho1_A           30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN  109 (252)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence            346766 788999999999999999999999999999998 789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHh--hhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHH
Q 036703           92 NFADFEMKMGEVDRARNVYECAVE--IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYR  169 (365)
Q Consensus        92 ~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  169 (365)
                      .++.++...|++++|++.|+++++  . .|.+    ..++..+|.++.   ..|++++|+..|+++++..|.+  ...+.
T Consensus       110 ~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~~~~--~~~~~  179 (252)
T 2ho1_A          110 NYGGFLYEQKRYEEAYQRLLEASQDTL-YPER----SRVFENLGLVSL---QMKKPAQAKEYFEKSLRLNRNQ--PSVAL  179 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTCTT-CTTH----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSCC--HHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhCcc-Cccc----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCccc--HHHHH
Confidence            999999999999999999999999  6 6665    899999999999   9999999999999999998876  67888


Q ss_pred             HHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703          170 KFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                      .++.++...|+.+        +|...++++++..|.+..++..++.++...|++++|...++++++..|.++.
T Consensus       180 ~la~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  244 (252)
T 2ho1_A          180 EMADLLYKEREYV--------PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE  244 (252)
T ss_dssp             HHHHHHHHTTCHH--------HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred             HHHHHHHHcCCHH--------HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence            8899999999865        7999999999999999999999999999999999999999999999999864

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.93  E-value=3.3e-24  Score=175.32  Aligned_cols=241  Identities=14%  Similarity=0.050  Sum_probs=198.4

Q ss_pred             ChhhHHHHHHHHHHh----CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTL----SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHI   75 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~   75 (365)
                      ++++|+..|+++++.    .|.++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|...
T Consensus        20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~   99 (275)
T 1xnf_A           20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA   99 (275)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence            368999999999987    3567889999999999999999999999999999999 88999999999999999999999


Q ss_pred             HHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703           76 FERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA  155 (365)
Q Consensus        76 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  155 (365)
                      |+++++.+|+++.++..+|.++...|++++|+..|+++++. .|.+    .......+ +..   ..|++++|+..++++
T Consensus       100 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~----~~~~~~~~-~~~---~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A          100 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPND----PFRSLWLY-LAE---QKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHH-HHH---HHHCHHHHHHHHHHH
T ss_pred             HHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCC----hHHHHHHH-HHH---HhcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999 8887    54444444 335   679999999999999


Q ss_pred             hccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHhCCHHHHHHHHH
Q 036703          156 LDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN----YDTWFDYIRLEERVGNQERVREVYE  231 (365)
Q Consensus       156 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~  231 (365)
                      +...|...  ..+. .+......++..        .|...+++++...|..    ..++..+|.++...|++++|...|+
T Consensus       171 ~~~~~~~~--~~~~-~~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  239 (275)
T 1xnf_A          171 FEKSDKEQ--WGWN-IVEFYLGNISEQ--------TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK  239 (275)
T ss_dssp             HHHSCCCS--THHH-HHHHHTTSSCHH--------HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhcCCcch--HHHH-HHHHHHHhcCHH--------HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99888763  2232 444444455433        6888888888776643    6899999999999999999999999


Q ss_pred             HHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHH
Q 036703          232 RAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVY  274 (365)
Q Consensus       232 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  274 (365)
                      +++...|.+..         .   ++..+ ...|++++|++.+
T Consensus       240 ~al~~~p~~~~---------~---~~~~~-~~l~~~~~a~~~~  269 (275)
T 1xnf_A          240 LAVANNVHNFV---------E---HRYAL-LELSLLGQDQDDL  269 (275)
T ss_dssp             HHHTTCCTTCH---------H---HHHHH-HHHHHHHHC----
T ss_pred             HHHhCCchhHH---------H---HHHHH-HHHHHHHhhHHHH
Confidence            99999997642         1   12222 3567777777665

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.93  E-value=1.2e-23  Score=168.73  Aligned_cols=205  Identities=13%  Similarity=0.150  Sum_probs=177.0

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      +..|..+|..+...|++++|+..|+++++.+|+ ...|..++.++...|++++|...|+++++.+|++..++..+|.++.
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            567899999999999999999999999999998 7899999999999999999999999999999999999999999999


Q ss_pred             hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHc
Q 036703           99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY  178 (365)
Q Consensus        99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  178 (365)
                      ..|++++|+..|+++++. .|.+    ..++..++.++.   ..|++++|+..++++++..|.+  ...+..++..+...
T Consensus       103 ~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~  172 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRA-GMEN----GDLFYMLGTVLV---KLEQPKLALPYLQRAVELNEND--TEARFQFGMCLANE  172 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHH-TCCS----HHHHHHHHHHHH---HTSCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HhccHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHc
Confidence            999999999999999999 9888    899999999999   9999999999999999998876  57888888889899


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703          179 GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       179 ~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                      |+.+        +|+..+++++...|++..++..++.++...|++++|...|+++++..|++..
T Consensus       173 ~~~~--------~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  228 (243)
T 2q7f_A          173 GMLD--------EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML  228 (243)
T ss_dssp             TCCH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHH
T ss_pred             CCHH--------HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHH
Confidence            9876        6999999999999999999999999999999999999999999999999864

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.92  E-value=7.3e-23  Score=162.05  Aligned_cols=210  Identities=12%  Similarity=0.084  Sum_probs=196.0

Q ss_pred             hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHH
Q 036703           15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF   93 (365)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~   93 (365)
                      ..|+++.+|..+|.++...|++++|+..|+++++..|+ ...|..++.++...|++++|...|++++..+|++..++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            47888999999999999999999999999999999998 78999999999999999999999999999999999999999


Q ss_pred             HHHHHhh-cchHHHHHHHHHHHh--hhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHH
Q 036703           94 ADFEMKM-GEVDRARNVYECAVE--IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRK  170 (365)
Q Consensus        94 ~~~~~~~-~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~  170 (365)
                      |.++... |++++|+..++++++  . .|..    ..++..+|.++.   ..|++++|+..|+++++..|.+  ...+..
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~  152 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPT-YPTP----YIANLNKGICSA---KQGQFGLAEAYLKRSLAAQPQF--PPAFKE  152 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTT-CSCH----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHSTTC--HHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcC-Ccch----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC--chHHHH
Confidence            9999999 999999999999999  5 5555    889999999999   9999999999999999998886  578888


Q ss_pred             HHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703          171 FLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP-MNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                      ++..+...|+.+        +|...+++++...| .+...+..++.++...|+.+.|..+++.+.+..|+++.
T Consensus       153 la~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  217 (225)
T 2vq2_A          153 LARTKMLAGQLG--------DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE  217 (225)
T ss_dssp             HHHHHHHHTCHH--------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHcCCHH--------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence            888888999865        69999999999999 99999999999999999999999999999999999864

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.92  E-value=2.6e-23  Score=170.01  Aligned_cols=249  Identities=10%  Similarity=-0.019  Sum_probs=171.2

Q ss_pred             HHhcCChhHHHHHHHHHHhhCC----C-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchH
Q 036703           30 EENLGNVAGARQIFERWMHWMP----D-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVD  104 (365)
Q Consensus        30 ~~~~g~~~~A~~~~~~al~~~p----~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  104 (365)
                      ....|++++|+..|+++++..|    . ..+|..+|.++...|++++|...|++++..+|+++.+|..+|.++...|+++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence            3345667777777777776532    2 4567777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhh
Q 036703          105 RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGI  184 (365)
Q Consensus       105 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  184 (365)
                      +|+..|+++++. .|.+    ..++..+|.++.   ..|++++|+..|+++++..|.+                      
T Consensus        95 ~A~~~~~~al~~-~~~~----~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~~~~----------------------  144 (275)
T 1xnf_A           95 AAYEAFDSVLEL-DPTY----NYAHLNRGIALY---YGGRDKLAQDDLLAFYQDDPND----------------------  144 (275)
T ss_dssp             HHHHHHHHHHHH-CTTC----THHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC----------------------
T ss_pred             HHHHHHHHHHhc-Cccc----cHHHHHHHHHHH---HhccHHHHHHHHHHHHHhCCCC----------------------
Confidence            777777777777 6666    677777777777   7777777777777766666554                      


Q ss_pred             hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhcc
Q 036703          185 EDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDA  264 (365)
Q Consensus       185 ~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (365)
                                            .......+ +....|++++|...+++++...|++..         .+. .+..+ ...
T Consensus       145 ----------------------~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~-~~~~~-~~~  190 (275)
T 1xnf_A          145 ----------------------PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQW---------GWN-IVEFY-LGN  190 (275)
T ss_dssp             ----------------------HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCST---------HHH-HHHHH-TTS
T ss_pred             ----------------------hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchH---------HHH-HHHHH-HHh
Confidence                                  22222222 123457788888888888887777642         232 33333 467


Q ss_pred             CChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhH
Q 036703          265 GDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETER  343 (365)
Q Consensus       265 ~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  343 (365)
                      ++.++|+..+++++...+...   |. +..+..+|.++...|++++|...|+++++.+|++...   ++..+...|++++
T Consensus       191 ~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~  264 (275)
T 1xnf_A          191 ISEQTLMERLKADATDNTSLA---EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQ  264 (275)
T ss_dssp             SCHHHHHHHHHHHCCSHHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhccccccc---ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHh
Confidence            777888888888887753211   12 5788889999999999999999999999999977543   3667777888888


Q ss_pred             HHHHH
Q 036703          344 ARAIF  348 (365)
Q Consensus       344 A~~~~  348 (365)
                      |.+.+
T Consensus       265 a~~~~  269 (275)
T 1xnf_A          265 DQDDL  269 (275)
T ss_dssp             C----
T ss_pred             hHHHH
Confidence            88776

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.92  E-value=2.5e-23  Score=174.98  Aligned_cols=294  Identities=11%  Similarity=0.008  Sum_probs=230.9

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC--ChhhHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN----LSAWINFADFEMKMGEVDRARNVYECAVEIFLAD--DHDEAEQ  127 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~  127 (365)
                      ..+...|..+...|++++|+..|+++++..|++    ..++..+|.++...|++++|+..+++++.. .+.  +.+....
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~   84 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-ARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhcccccHHHHH
Confidence            456778899999999999999999999999987    467889999999999999999999999876 432  1244577


Q ss_pred             HHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----hHHHHHHHHHHHHHcCC-------------chhhhHHHHH
Q 036703          128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR----AEDLYRKFLAFEKQYGD-------------REGIEDAIAG  190 (365)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~  190 (365)
                      ++..+|.++.   ..|++++|+..++++++..+...    ....+..++.++...|+             .... ....+
T Consensus        85 ~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~  160 (338)
T 3ro2_A           85 ASGNLGNTLK---VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV-RNALQ  160 (338)
T ss_dssp             HHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH-HHHHH
T ss_pred             HHHHHHHHHH---HccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH-HHHHH
Confidence            8999999999   99999999999999998654322    24466667777776665             1110 01134


Q ss_pred             HHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhcc
Q 036703          191 KMRLQYEDGVRK------NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDA  264 (365)
Q Consensus       191 ~a~~~~~~~l~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (365)
                      +|...+++++..      .|....++..++.++...|++++|...+++++...+......   .....+..++..+ ...
T Consensus       161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~l~~~~-~~~  236 (338)
T 3ro2_A          161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA---AERRAYSNLGNAY-IFL  236 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHH-HHc
Confidence            688888887764      233356789999999999999999999999998755432111   1134677788887 589


Q ss_pred             CChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcch------HHHHHHHHHHHhhc
Q 036703          265 GDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN------CYAWSKYTELEKSL  338 (365)
Q Consensus       265 ~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~  338 (365)
                      |++++|+..+++++...+...........+..++.++...|++++|...+++++...|..      ..++..++.++...
T Consensus       237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  316 (338)
T 3ro2_A          237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL  316 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence            999999999999998865443221116788899999999999999999999999886543      55888999999999


Q ss_pred             cchhHHHHHHHHHhcCcC
Q 036703          339 DETERARAIFELAIAQPI  356 (365)
Q Consensus       339 g~~~~A~~~~~~a~~~~~  356 (365)
                      |++++|...|+++++..+
T Consensus       317 g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          317 GNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             TCHHHHHHHHHHHHHC--
T ss_pred             CChHHHHHHHHHHHHHHH
Confidence            999999999999998876

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.92  E-value=3.5e-23  Score=166.01  Aligned_cols=203  Identities=12%  Similarity=0.098  Sum_probs=184.4

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++..|. ..+|..++.++...|++++|...|+++
T Consensus        38 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  117 (243)
T 2q7f_A           38 DYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKA  117 (243)
T ss_dssp             ----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999998 789999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  159 (365)
                      ++..|.++.++..+|.++...|++++|+..++++++. .|.+    ..++..+|.++.   ..|++++|+..|+++++..
T Consensus       118 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~  189 (243)
T 2q7f_A          118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NEND----TEARFQFGMCLA---NEGMLDEALSQFAAVTEQD  189 (243)
T ss_dssp             HHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHTCCHHHHHHHHHHHHHC
T ss_pred             HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcc----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999 8888    899999999999   9999999999999999998


Q ss_pred             CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 036703          160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVG  221 (365)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  221 (365)
                      |..  ...+..++.++...|+.+        +|...|+++++.+|++..++..++.+....+
T Consensus       190 ~~~--~~~~~~la~~~~~~~~~~--------~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          190 PGH--ADAFYNAGVTYAYKENRE--------KALEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             TTC--HHHHHHHHHHHHHTTCTT--------HHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             ccc--HHHHHHHHHHHHHccCHH--------HHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence            876  578888999999999876        6999999999999999999988887654433

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.92  E-value=2.3e-23  Score=183.09  Aligned_cols=212  Identities=12%  Similarity=0.032  Sum_probs=198.8

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCh-hHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNV-AGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++...++++....|.+..+|..+|.++...|++ ++|+..|+++++.+|+ ..+|..+|.++...|++++|...|+++
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45677788888888999999999999999999999 9999999999999999 899999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhh---------cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc--------
Q 036703           80 VQCHPYNLSAWINFADFEMKM---------GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC--------  142 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  142 (365)
                      ++.+|+ ..++..+|.++...         |++++|+..|+++++. .|.+    ..+|..+|.++.   ..        
T Consensus       164 l~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~lg~~~~---~~~~~~~~~~  234 (474)
T 4abn_A          164 LTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-DVLD----GRSWYILGNAYL---SLYFNTGQNP  234 (474)
T ss_dssp             HTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHHHHTTCCH
T ss_pred             HhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HHHHhhcccc
Confidence            999997 79999999999999         9999999999999999 9988    999999999999   88        


Q ss_pred             chhHHHHHHHHHHhccCC---CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 036703          143 KETDRARCIYKFALDRIP---KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER  219 (365)
Q Consensus       143 ~~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~  219 (365)
                      |++++|+..|+++++..|   .+  ...|..++.++...|+++        +|+..|+++++.+|++..++..++.++..
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~--~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~l~p~~~~a~~~l~~~~~~  304 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSN--PDLHLNRATLHKYEESYG--------EALEGFSQAAALDPAWPEPQQREQQLLEF  304 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCcccC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999988   54  789999999999999866        79999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHH
Q 036703          220 VGNQERVREVYER  232 (365)
Q Consensus       220 ~~~~~~A~~~~~~  232 (365)
                      .|++++|...+.+
T Consensus       305 lg~~~eAi~~~~~  317 (474)
T 4abn_A          305 LSRLTSLLESKGK  317 (474)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcc
Confidence            9999998876654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.92  E-value=1.7e-23  Score=181.38  Aligned_cols=295  Identities=9%  Similarity=0.013  Sum_probs=234.9

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch----HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC--ChhhHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL----SAWINFADFEMKMGEVDRARNVYECAVEIFLAD--DHDEAE  126 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~  126 (365)
                      ...+...+..+...|++++|+..|+++++..|+++    .++..+|.++...|++++|+..|+++++. ...  +.+...
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~  126 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL-AKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHccCchHHH
Confidence            34567788999999999999999999999999876    58999999999999999999999999886 421  124457


Q ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC----chhHHHHHHHHHHHHHcCC----------chhhhHHHHHHH
Q 036703          127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK----GRAEDLYRKFLAFEKQYGD----------REGIEDAIAGKM  192 (365)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~a  192 (365)
                      .++..+|.++.   ..|++++|+..|++++...+.    ......+..++.++...|+          .... ....++|
T Consensus       127 ~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a-~~~~~~A  202 (411)
T 4a1s_A          127 KSSGNLGNTLK---VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV-KEALTRA  202 (411)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH-HHHHHHH
T ss_pred             HHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh-hHHHHHH
Confidence            88999999999   999999999999999986332    1235577777777777776          1110 1113368


Q ss_pred             HHHHHHHHHcC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC
Q 036703          193 RLQYEDGVRKN------PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD  266 (365)
Q Consensus       193 ~~~~~~~l~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (365)
                      +..++++++..      |....++..+|.++...|++++|...|++++...|......   ....++..++.++ ...|+
T Consensus       203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~-~~~g~  278 (411)
T 4a1s_A          203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---AERRANSNLGNSH-IFLGQ  278 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHH-HTTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHH-HHCcC
Confidence            88888887753      23346889999999999999999999999998866532111   1234677788887 69999


Q ss_pred             hhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc------hHHHHHHHHHHHhhccc
Q 036703          267 LERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE------NCYAWSKYTELEKSLDE  340 (365)
Q Consensus       267 ~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~  340 (365)
                      +++|+..|++++...+.....+.....+..++.++...|++++|..+|++++...++      ...++..++.++...|+
T Consensus       279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  358 (411)
T 4a1s_A          279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG  358 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence            999999999999987544322112678899999999999999999999999988554      35589999999999999


Q ss_pred             hhHHHHHHHHHhcCcC
Q 036703          341 TERARAIFELAIAQPI  356 (365)
Q Consensus       341 ~~~A~~~~~~a~~~~~  356 (365)
                      +++|...|+++++..+
T Consensus       359 ~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          359 HERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.91  E-value=1.8e-21  Score=158.98  Aligned_cols=234  Identities=9%  Similarity=0.018  Sum_probs=162.3

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCCcchHHH
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLR----YNEVQRARHIFERLVQCHPYNLSAW   90 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~   90 (365)
                      +|+++.++..+|.++...|++++|+..|+++++  |+ ..++..++.++..    .+++++|...|+++++..  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            466777788888888888888888888888877  44 5677777777777    778888888888877764  67777


Q ss_pred             HHHHHHHHh----hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHhccCCCc
Q 036703           91 INFADFEMK----MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN----CKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus        91 ~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      ..+|.++..    .+++++|+..|+++++. .  +    +.++..+|.++.   .    .+++++|+..|+++++..   
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~--~----~~a~~~lg~~~~---~~~~~~~~~~~A~~~~~~a~~~~---  144 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL-K--Y----AEGCASLGGIYH---DGKVVTRDFKKAVEYFTKACDLN---  144 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T--C----HHHHHHHHHHHH---HCSSSCCCHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHc-C--C----ccHHHHHHHHHH---cCCCcccCHHHHHHHHHHHHhcC---
Confidence            777877777    77788888888877766 3  3    667777777777   6    666666666666665432   


Q ss_pred             hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCC
Q 036703          163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER----VGNQERVREVYERAIANVP  238 (365)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p  238 (365)
                                                                 +..++..++.++..    .+++++|+..|+++++..+
T Consensus       145 -------------------------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~  181 (273)
T 1ouv_A          145 -------------------------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD  181 (273)
T ss_dssp             -------------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             -------------------------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence                                                       23445555666555    6677777777777776532


Q ss_pred             CchhhhHHHHhHHHHHHHHHHHhhc----cCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH----hCCCccH
Q 036703          239 PAEEKRYWQRYIYLWINYALYKEVD----AGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC----LGNIDPC  310 (365)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A  310 (365)
                      .           ..+..++.++ ..    .+++++|+..|+++++..       | +..+..++.++..    .+++++|
T Consensus       182 ~-----------~a~~~lg~~~-~~g~~~~~~~~~A~~~~~~a~~~~-------~-~~a~~~l~~~~~~g~~~~~~~~~A  241 (273)
T 1ouv_A          182 S-----------PGCFNAGNMY-HHGEGATKNFKEALARYSKACELE-------N-GGGCFNLGAMQYNGEGVTRNEKQA  241 (273)
T ss_dssp             H-----------HHHHHHHHHH-HHTCSSCCCHHHHHHHHHHHHHTT-------C-HHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred             H-----------HHHHHHHHHH-HcCCCCCccHHHHHHHHHHHHhCC-------C-HHHHHHHHHHHHcCCCcccCHHHH
Confidence            2           2455566665 35    677777777777777763       2 4566677777777    7888888


Q ss_pred             HHHHHHHHhhCcchHHHHH
Q 036703          311 RKLYEKYLEWSPENCYAWS  329 (365)
Q Consensus       311 ~~~~~~al~~~p~~~~~~~  329 (365)
                      .++|+++++..|++...++
T Consensus       242 ~~~~~~a~~~~~~~a~~~l  260 (273)
T 1ouv_A          242 IENFKKGCKLGAKGACDIL  260 (273)
T ss_dssp             HHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHH
Confidence            8888888888876555443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=2.3e-22  Score=154.16  Aligned_cols=169  Identities=13%  Similarity=0.128  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA  133 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  133 (365)
                      .+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++.. .|..    ..++..++
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~~~----~~~~~~~~   80 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DTTS----AEAYYILG   80 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCC----HHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-Cchh----HHHHHHHH
Confidence            344444444444444455555555555445544444555555554455555555555554444 4444    44444444


Q ss_pred             HHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 036703          134 KFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDY  213 (365)
Q Consensus       134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~  213 (365)
                      .++.   ..++++.|...+.+++...|.+  ...+..++..+...|+++        +|+..|+++++.+|+++.+|..+
T Consensus        81 ~~~~---~~~~~~~a~~~~~~a~~~~~~~--~~~~~~lg~~~~~~g~~~--------~A~~~~~~~l~~~p~~~~~~~~l  147 (184)
T 3vtx_A           81 SANF---MIDEKQAAIDALQRAIALNTVY--ADAYYKLGLVYDSMGEHD--------KAIEAYEKTISIKPGFIRAYQSI  147 (184)
T ss_dssp             HHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHH---HcCCHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHhCCch--------hHHHHHHHHHHhcchhhhHHHHH
Confidence            4444   4444555555555544444443  334444444444455433        45556666666677777788888


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          214 IRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       214 ~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      |.++...|++++|+..|+++++.+|.+
T Consensus       148 g~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          148 GLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            888888888888888888888887765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=1.9e-22  Score=154.59  Aligned_cols=173  Identities=13%  Similarity=0.133  Sum_probs=161.7

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703           18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF   96 (365)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~   96 (365)
                      +++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...+.+++...|+++.++..++.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            46789999999999999999999999999999999 88999999999999999999999999999999999999999999


Q ss_pred             HHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 036703           97 EMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK  176 (365)
Q Consensus        97 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  176 (365)
                      +...++++.|...+.+++.. .|.+    ..++..+|.++.   ..|++++|+..|+++++..|.+  ...|..++..+.
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~-~~~~----~~~~~~lg~~~~---~~g~~~~A~~~~~~~l~~~p~~--~~~~~~lg~~~~  152 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIAL-NTVY----ADAYYKLGLVYD---SMGEHDKAIEAYEKTISIKPGF--IRAYQSIGLAYE  152 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh-Cccc----hHHHHHHHHHHH---HhCCchhHHHHHHHHHHhcchh--hhHHHHHHHHHH
Confidence            99999999999999999999 9888    999999999999   9999999999999999999987  678999999999


Q ss_pred             HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH
Q 036703          177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD  208 (365)
Q Consensus       177 ~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~  208 (365)
                      ..|+.+        +|+..|+++++.+|+++.
T Consensus       153 ~~g~~~--------~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          153 GKGLRD--------EAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HTTCHH--------HHHHHHHHHHHTTHHHHH
T ss_pred             HCCCHH--------HHHHHHHHHHhCCccCHH
Confidence            999866        799999999999997643

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.90  E-value=2.1e-21  Score=156.53  Aligned_cols=194  Identities=11%  Similarity=0.043  Sum_probs=181.5

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|+..|++++..+|.+..+|..+|.++...|++++|+..|+++++..|. ...|..++.++...|++++|...|+++
T Consensus        52 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  131 (252)
T 2ho1_A           52 NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEA  131 (252)
T ss_dssp             CTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999998 789999999999999999999999999


Q ss_pred             HH--hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703           80 VQ--CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus        80 l~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      +.  ..|.+..++..+|.++...|++++|+..|+++++. .|.+    ..++..++.++.   ..|++++|...++++++
T Consensus       132 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~~la~~~~---~~g~~~~A~~~~~~~~~  203 (252)
T 2ho1_A          132 SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-NRNQ----PSVALEMADLLY---KEREYVPARQYYDLFAQ  203 (252)
T ss_dssp             TTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHT
T ss_pred             HhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-Cccc----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHH
Confidence            99  88989999999999999999999999999999999 9888    999999999999   99999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 036703          158 RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFD  212 (365)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~  212 (365)
                      ..|..  ...+..++.++...|+.+        +|...++++++.+|+++.++..
T Consensus       204 ~~~~~--~~~~~~~~~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~  248 (252)
T 2ho1_A          204 GGGQN--ARSLLLGIRLAKVFEDRD--------TAASYGLQLKRLYPGSLEYQEF  248 (252)
T ss_dssp             TSCCC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTSHHHHHH
T ss_pred             hCcCc--HHHHHHHHHHHHHccCHH--------HHHHHHHHHHHHCCCCHHHHHH
Confidence            98876  567888888888889865        6999999999999999876543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.90  E-value=1.9e-21  Score=153.88  Aligned_cols=171  Identities=13%  Similarity=0.101  Sum_probs=123.4

Q ss_pred             CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHH
Q 036703           50 MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQL  128 (365)
Q Consensus        50 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  128 (365)
                      .|+ ...|..++..+...|++++|...|+++++.+|+++.++..+|.++...|++++|+..|+++++. .|.+    ..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~----~~~   78 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDS----AEI   78 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCC----hHH
Confidence            344 5778888888888888888888888888888888888888888888888888888888888888 7777    778


Q ss_pred             HHHHHHHHHhcccc-chhHHHHHHHHHHhc--cCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC
Q 036703          129 FVAFAKFEEMGCNC-KETDRARCIYKFALD--RIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM  205 (365)
Q Consensus       129 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~  205 (365)
                      +..++.++.   .. |++++|+..|+++++  ..|.  ....+..++..+...|+.+        +|+..|+++++..|.
T Consensus        79 ~~~l~~~~~---~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~  145 (225)
T 2vq2_A           79 NNNYGWFLC---GRLNRPAESMAYFDKALADPTYPT--PYIANLNKGICSAKQGQFG--------LAEAYLKRSLAAQPQ  145 (225)
T ss_dssp             HHHHHHHHH---TTTCCHHHHHHHHHHHHTSTTCSC--HHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHH---HhcCcHHHHHHHHHHHHcCcCCcc--hHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCC
Confidence            888888888   88 888888888888887  2222  2345555555555555543        456666666666666


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 036703          206 NYDTWFDYIRLEERVGNQERVREVYERAIANVP  238 (365)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  238 (365)
                      +..++..++.++...|++++|...+++++...|
T Consensus       146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            666666666666666666666666666665555

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.90  E-value=1.4e-21  Score=170.63  Aligned_cols=307  Identities=11%  Similarity=0.049  Sum_probs=181.5

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCh---hHHHHHHHHHHhhCCChHHHHHHHHHHHHhc-----cHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNV---AGARQIFERWMHWMPDHEGWLSYIKFKLRYN-----EVQRA   72 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----~~~~A   72 (365)
                      ++++|...|+++...  +++.++..+|.++...|+.   ++|+..|+++++.  ++.++..++.++...+     ++++|
T Consensus        18 ~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~~A   93 (452)
T 3e4b_A           18 DTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLAAKPGATEAEHHEA   93 (452)
T ss_dssp             HHHHHHHHHHHHHHH--TCCTGGGTCC------------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence            367899999998765  5678888999999999988   8999999999977  5566777888555544     88999


Q ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc----hhHHH
Q 036703           73 RHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK----ETDRA  148 (365)
Q Consensus        73 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~A  148 (365)
                      ...|++++...  ++.++..+|.++...+..+++.+.++.......+.+    +..+..++.++.   ..+    ..+.+
T Consensus        94 ~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~----~~a~~~Lg~~y~---~~~~~~~~~~~a  164 (452)
T 3e4b_A           94 ESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY----PEAGLAQVLLYR---TQGTYDQHLDDV  164 (452)
T ss_dssp             HHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC----TTHHHHHHHHHH---HHTCGGGGHHHH
T ss_pred             HHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC----HHHHHHHHHHHH---cCCCcccCHHHH
Confidence            99999998854  456888889888887665544444443333311222    556677777776   555    33344


Q ss_pred             HHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCHH
Q 036703          149 RCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV----GNQE  224 (365)
Q Consensus       149 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~----~~~~  224 (365)
                      ..+++.+....|.     .+..++.++...|....     ..+|+..|+++....|.+...++.+|.++...    ++++
T Consensus       165 ~~~~~~a~~~~~~-----a~~~Lg~~~~~~g~~~~-----~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~  234 (452)
T 3e4b_A          165 ERICKAALNTTDI-----CYVELATVYQKKQQPEQ-----QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEK  234 (452)
T ss_dssp             HHHHHHHTTTCTT-----HHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred             HHHHHHHHcCCHH-----HHHHHHHHHHHcCCccc-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHH
Confidence            4455555544443     45555555555553322     33677777777777777777777777776544    5777


Q ss_pred             HHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHh--hccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHH
Q 036703          225 RVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKE--VDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMEL  302 (365)
Q Consensus       225 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  302 (365)
                      +|+..|+++.   |.++.         .+..++.++.  ...+++++|+..|+++.+.        .++..+..+|.++.
T Consensus       235 ~A~~~~~~aa---~g~~~---------a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--------g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          235 TAQALLEKIA---PGYPA---------SWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--------DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHHHHG---GGSTH---------HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc---CCCHH---------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH
Confidence            7777777776   44432         4555555421  2466777777777777754        23455666666665


Q ss_pred             HhC-----CCccHHHHHHHHHhhCcchHHHHHHHHHHHhh----ccchhHHHHHHHHHhcC
Q 036703          303 CLG-----NIDPCRKLYEKYLEWSPENCYAWSKYTELEKS----LDETERARAIFELAIAQ  354 (365)
Q Consensus       303 ~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~  354 (365)
                       .|     ++++|..+|+++.   |.++.++..++.++..    ..+.++|...|+++.+.
T Consensus       295 -~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          295 -EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             -HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             -cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence             44     7777777777776   6677777777776665    22677777777777654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.89  E-value=1e-20  Score=154.43  Aligned_cols=227  Identities=10%  Similarity=-0.001  Sum_probs=162.2

Q ss_pred             CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHhccC
Q 036703           84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN----CKETDRARCIYKFALDRI  159 (365)
Q Consensus        84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~  159 (365)
                      |+++.++..+|.++...|++++|+..|+++++.   .+    +.++..+|.++.   .    .+++++|+..|+++++..
T Consensus         3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~----~~a~~~lg~~~~---~g~~~~~~~~~A~~~~~~a~~~~   72 (273)
T 1ouv_A            3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KE----NSGCFNLGVLYY---QGQGVEKNLKKAASFYAKACDLN   72 (273)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TC----HHHHHHHHHHHH---HTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CC----HHHHHHHHHHHH---cCCCcCCCHHHHHHHHHHHHHCC
Confidence            444555555555555555555555555555542   22    344555555555   5    555555555555555442


Q ss_pred             CCchhHHHHHHHHHHHHH----cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHH
Q 036703          160 PKGRAEDLYRKFLAFEKQ----YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER----VGNQERVREVYE  231 (365)
Q Consensus       160 p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~  231 (365)
                          ....+..++.++..    .++.+        +|+..|+++++.  +++.++..+|.++..    .+++++|+..|+
T Consensus        73 ----~~~a~~~lg~~~~~g~~~~~~~~--------~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~  138 (273)
T 1ouv_A           73 ----YSNGCHLLGNLYYSGQGVSQNTN--------KALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFT  138 (273)
T ss_dssp             ----CHHHHHHHHHHHHHTSSSCCCHH--------HHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHhCCCCcccCHH--------HHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence                13344444444444    44433        466666666655  367888889999988    999999999999


Q ss_pred             HHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc----cCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH----
Q 036703          232 RAIANVPPAEEKRYWQRYIYLWINYALYKEVD----AGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC----  303 (365)
Q Consensus       232 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----  303 (365)
                      ++++..+..           .+..++.++ ..    .+++++|+..|+++++..        .+..+..++.++..    
T Consensus       139 ~a~~~~~~~-----------a~~~lg~~~-~~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~g~~~  198 (273)
T 1ouv_A          139 KACDLNDGD-----------GCTILGSLY-DAGRGTPKDLKKALASYDKACDLK--------DSPGCFNAGNMYHHGEGA  198 (273)
T ss_dssp             HHHHTTCHH-----------HHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTCSS
T ss_pred             HHHhcCcHH-----------HHHHHHHHH-HcCCCCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHcCCCC
Confidence            999976332           666777776 35    899999999999999873        35678889999999    


Q ss_pred             hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh----ccchhHHHHHHHHHhcCcC
Q 036703          304 LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS----LDETERARAIFELAIAQPI  356 (365)
Q Consensus       304 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~  356 (365)
                      .+++++|+..|+++++..|  +.++..++.++..    .|++++|...|+++++..|
T Consensus       199 ~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          199 TKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             CccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence            9999999999999999876  8889999999999    9999999999999999887

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.89  E-value=1.4e-20  Score=149.35  Aligned_cols=203  Identities=10%  Similarity=0.007  Sum_probs=175.9

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC-C-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703           17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP-D-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA   94 (365)
Q Consensus        17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~   94 (365)
                      |.++..|...|.++...|++++|+..|+++++.+| . ...|..+|.++...|++++|+..|++++..+|+++.++..+|
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            55678999999999999999999999999999997 4 778888999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhhcCChhhHH-------HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHH
Q 036703           95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAE-------QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDL  167 (365)
Q Consensus        95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  167 (365)
                      .++...|++++|+..|+++++. .|.+    +       .+|..+|.++.   ..|++++|+..|+++++..|.+.....
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~~~~~~~~~g~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~  155 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKA-VPGN----ATIEKLYAIYYLKEGQKFQ---QAGNIEKAEENYKHATDVTSKKWKTDA  155 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHH-CCCc----HHHHHHHHHHHHHHhHHHH---HhccHHHHHHHHHHHHhcCCCcccHHH
Confidence            9999999999999999999999 9987    5       66999999999   999999999999999999987112567


Q ss_pred             HHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703          168 YRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                      +..++.++...             +...++++....+.+...+...  .....+.+++|+..|+++++..|++..
T Consensus       156 ~~~l~~~~~~~-------------~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~  215 (228)
T 4i17_A          156 LYSLGVLFYNN-------------GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTE  215 (228)
T ss_dssp             HHHHHHHHHHH-------------HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHH-------------HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence            77777766543             4455677777777775554333  345667899999999999999999864

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.89  E-value=6.3e-22  Score=173.92  Aligned_cols=218  Identities=7%  Similarity=-0.051  Sum_probs=195.7

Q ss_pred             hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchh-HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHc
Q 036703          100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKET-DRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY  178 (365)
Q Consensus       100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  178 (365)
                      .+.+++++..+++.... .|.+    ..++..+|.++.   ..|++ ++|+..|+++++..|.+  ...|..++..+...
T Consensus        81 ~~~~~~al~~l~~~~~~-~~~~----a~~~~~lg~~~~---~~g~~~~~A~~~~~~al~~~p~~--~~a~~~lg~~~~~~  150 (474)
T 4abn_A           81 QEEMEKTLQQMEEVLGS-AQVE----AQALMLKGKALN---VTPDYSPEAEVLLSKAVKLEPEL--VEAWNQLGEVYWKK  150 (474)
T ss_dssp             HHHHHHHHHHHHHHHTT-CCCC----HHHHHHHHHHHT---SSSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-Cchh----HHHHHHHHHHHH---hccccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHc
Confidence            34577888888888888 7777    999999999999   99999 99999999999999987  67899999999999


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcCCCchhhhHHHHh
Q 036703          179 GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV---------GNQERVREVYERAIANVPPAEEKRYWQRY  249 (365)
Q Consensus       179 ~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  249 (365)
                      |+.+        +|+..|+++++.+|+ ..++..+|.++...         |++++|+..|+++++.+|.+..       
T Consensus       151 g~~~--------~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------  214 (474)
T 4abn_A          151 GDVT--------SAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR-------  214 (474)
T ss_dssp             TCHH--------HHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH-------
T ss_pred             CCHH--------HHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH-------
Confidence            9866        799999999999999 79999999999999         9999999999999999999854       


Q ss_pred             HHHHHHHHHHHhhcc--------CChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703          250 IYLWINYALYKEVDA--------GDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW  320 (365)
Q Consensus       250 ~~~~~~~~~~~~~~~--------~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  320 (365)
                        .|..++..+ ...        |++++|+..|+++++..|..    ++ +..+..+|.++...|++++|...|+++++.
T Consensus       215 --~~~~lg~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          215 --SWYILGNAY-LSLYFNTGQNPKISQQALSAYAQAEKVDRKA----SSNPDLHLNRATLHKYEESYGEALEGFSQAAAL  287 (474)
T ss_dssp             --HHHHHHHHH-HHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHH-HHHHHhhccccchHHHHHHHHHHHHHhCCCc----ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              778888887 466        89999999999999998310    14 889999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHhhccchhHHHHHHHH
Q 036703          321 SPENCYAWSKYTELEKSLDETERARAIFEL  350 (365)
Q Consensus       321 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~  350 (365)
                      +|++..+|..++.++...|+.++|...+.+
T Consensus       288 ~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          288 DPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.88  E-value=1.3e-20  Score=161.69  Aligned_cols=296  Identities=10%  Similarity=0.049  Sum_probs=218.5

Q ss_pred             ChhhHHHHHHHHHHhCC---CchHHH--HHHH--HHHHhcCChhHHH-----------HHHHHHHhhCCChHH------H
Q 036703            1 FIDHGRNAWDRVVTLSP---RVDQLW--NNYI--RMEENLGNVAGAR-----------QIFERWMHWMPDHEG------W   56 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p---~~~~~~--~~~~--~~~~~~g~~~~A~-----------~~~~~al~~~p~~~~------~   56 (365)
                      ++++|..+++.+....+   .+..+.  +.+.  +.....++++.+.           ..+++.-...+....      +
T Consensus        27 ~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~~~  106 (383)
T 3ulq_A           27 SIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFN  106 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHHHH
Confidence            46788888888776532   233333  3322  2233344555555           666664432222233      3


Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh---CC---cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHH
Q 036703           57 LSYIKFKLRYNEVQRARHIFERLVQC---HP---YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQ  127 (365)
Q Consensus        57 ~~~~~~~~~~~~~~~A~~~~~~~l~~---~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~  127 (365)
                      ...|.++...|++++|...|++++..   .|   ....++..+|.++...|++++|+..++++++. .+..   .+....
T Consensus       107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~  185 (383)
T 3ulq_A          107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI-YKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHTCSTTHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhCccchHHHHH
Confidence            34788999999999999999999986   23   34688999999999999999999999999998 7654   233466


Q ss_pred             HHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH--
Q 036703          128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR--  201 (365)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~--  201 (365)
                      ++..+|.++.   ..|++++|+..|+++++..+...    ....+..++.++...|+.+        +|+..|++++.  
T Consensus       186 ~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~--------~A~~~~~~al~~~  254 (383)
T 3ulq_A          186 CHSLFATNFL---DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYE--------DAIPYFKRAIAVF  254 (383)
T ss_dssp             HHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHH
Confidence            8899999999   99999999999999998654321    3457788889999999866        79999999999  


Q ss_pred             ---cC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC---hhHHHHHH
Q 036703          202 ---KN-PMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD---LERTRDVY  274 (365)
Q Consensus       202 ---~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~  274 (365)
                         .+ |....++..+|.++...|++++|...+++++...+.......    ...+..++.++ ...|+   +++|+..+
T Consensus       255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~l~~~~-~~~~~~~~~~~al~~~  329 (383)
T 3ulq_A          255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY----LSEFEFLKSLY-LSGPDEEAIQGFFDFL  329 (383)
T ss_dssp             HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH----HHHHHHHHHHH-TSSCCHHHHHHHHHHH
T ss_pred             HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHH-hCCCcHHHHHHHHHHH
Confidence               56 777889999999999999999999999999987543221111    11234466666 47777   67777777


Q ss_pred             HHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703          275 RTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWS  321 (365)
Q Consensus       275 ~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  321 (365)
                      ++.-..        |. ..++..+|.++...|++++|..+|+++++..
T Consensus       330 ~~~~~~--------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          330 ESKMLY--------ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HHTTCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHCcCH--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            766222        33 6677788888888888888888888888764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.88  E-value=4.2e-20  Score=146.63  Aligned_cols=216  Identities=9%  Similarity=0.038  Sum_probs=144.6

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP-YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVA  131 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  131 (365)
                      +..|...|..+...|++++|+..|+++++.+| .+..++..+|.++...|++++|+..|+++++. .|.+    ..+|..
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~   81 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-NYNL----ANAYIG   81 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCSH----HHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-Ccch----HHHHHH
Confidence            45566666666666666666666666666665 55666666666666666666666666666666 5555    666666


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 036703          132 FAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWF  211 (365)
Q Consensus       132 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~  211 (365)
                      +|.++.   ..|++++|+..|+++++..|.+.  .++..+                                   ..+|.
T Consensus        82 l~~~~~---~~~~~~~A~~~~~~al~~~p~~~--~~~~~~-----------------------------------~~~~~  121 (228)
T 4i17_A           82 KSAAYR---DMKNNQEYIATLTEGIKAVPGNA--TIEKLY-----------------------------------AIYYL  121 (228)
T ss_dssp             HHHHHH---HTTCHHHHHHHHHHHHHHSTTCH--HHHHHH-----------------------------------HHHHH
T ss_pred             HHHHHH---HcccHHHHHHHHHHHHHHCCCcH--HHHHHH-----------------------------------HHHHH
Confidence            666666   66666666666666666555541  111111                                   14678


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC--chhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcch
Q 036703          212 DYIRLEERVGNQERVREVYERAIANVPP--AEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRME  289 (365)
Q Consensus       212 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~  289 (365)
                      .+|.++...|++++|+..|+++++..|.  +.         ..+..++.++ .     ..+...++++....+..     
T Consensus       122 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---------~~~~~l~~~~-~-----~~~~~~~~~a~~~~~~~-----  181 (228)
T 4i17_A          122 KEGQKFQQAGNIEKAEENYKHATDVTSKKWKT---------DALYSLGVLF-Y-----NNGADVLRKATPLASSN-----  181 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHH---------HHHHHHHHHH-H-----HHHHHHHHHHGGGTTTC-----
T ss_pred             HHhHHHHHhccHHHHHHHHHHHHhcCCCcccH---------HHHHHHHHHH-H-----HHHHHHHHHHHhcccCC-----
Confidence            8899999999999999999999999998  63         3777777775 2     33445567776664221     


Q ss_pred             hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703          290 ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK  336 (365)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  336 (365)
                       +..+  .+......+.+++|+..|+++++.+|++..+...++.+..
T Consensus       182 -~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          182 -KEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             -HHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             -HHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence             2222  2333445678999999999999999999999888877654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.88  E-value=2.7e-21  Score=176.36  Aligned_cols=173  Identities=16%  Similarity=0.192  Sum_probs=160.3

Q ss_pred             HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHH
Q 036703           14 TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN   92 (365)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~   92 (365)
                      ...|+++.++..+|.++..+|++++|+..|+++++++|+ ..+|..+|.++...|++++|+..|+++++.+|++..+|..
T Consensus         3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            357999999999999999999999999999999999999 8999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHH
Q 036703           93 FADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL  172 (365)
Q Consensus        93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  172 (365)
                      +|.++...|++++|++.|+++++. .|++    ..+|..+|.++.   .+|++++|+..|+++++..|++  ...+..++
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l-~P~~----~~a~~~Lg~~~~---~~g~~~eAi~~~~~Al~l~P~~--~~a~~~L~  152 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQI-NPAF----ADAHSNLASIHK---DSGNIPEAIASYRTALKLKPDF--PDAYCNLA  152 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSCC--HHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC--hHHHhhhh
Confidence            999999999999999999999999 9988    999999999999   9999999999999999999987  67899999


Q ss_pred             HHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC
Q 036703          173 AFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP  204 (365)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p  204 (365)
                      ..+...|+.+        .|...|+++++..|
T Consensus       153 ~~l~~~g~~~--------~A~~~~~kal~l~~  176 (723)
T 4gyw_A          153 HCLQIVCDWT--------DYDERMKKLVSIVA  176 (723)
T ss_dssp             HHHHHTTCCT--------THHHHHHHHHHHHH
T ss_pred             hHHHhcccHH--------HHHHHHHHHHHhCh
Confidence            9999999987        46677777766543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.88  E-value=3.7e-20  Score=158.80  Aligned_cols=303  Identities=11%  Similarity=0.022  Sum_probs=230.2

Q ss_pred             HHHHhcCChhHHHHHHHHHHhhC----CChH--HHHHHH--HHHHHhccHHHHH-----------HHHHHHHHhCCcchH
Q 036703           28 RMEENLGNVAGARQIFERWMHWM----PDHE--GWLSYI--KFKLRYNEVQRAR-----------HIFERLVQCHPYNLS   88 (365)
Q Consensus        28 ~~~~~~g~~~~A~~~~~~al~~~----p~~~--~~~~~~--~~~~~~~~~~~A~-----------~~~~~~l~~~p~~~~   88 (365)
                      -.....+++++|..+++.+.+..    ++..  .+..+.  +.....++++.+.           ..++++-. .|.+..
T Consensus        20 ~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~~~~~   98 (383)
T 3ulq_A           20 YMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQARLT   98 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HTHHHH
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cCCCch
Confidence            34557899999999999887543    2322  333333  2233445555555           66666433 443444


Q ss_pred             HHH------HHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           89 AWI------NFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        89 ~~~------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      .+.      ..|.++...|++++|+..|+++++. ....  ......++..+|.++.   ..|++++|+..++++++..+
T Consensus        99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~a~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~~  174 (383)
T 3ulq_A           99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESK-LIFVKDRIEKAEFFFKMSESYY---YMKQTYFSMDYARQAYEIYK  174 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-GGGCCCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HhhCCCHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHH
Confidence            333      4899999999999999999999986 4331  2345789999999999   99999999999999998644


Q ss_pred             Cch-----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHhCCHHHHHHH
Q 036703          161 KGR-----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY------DTWFDYIRLEERVGNQERVREV  229 (365)
Q Consensus       161 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~------~~~~~~~~~~~~~~~~~~A~~~  229 (365)
                      ...     ....+..++..+...|+++        +|...|++++...|...      .++..+|.++...|++++|+..
T Consensus       175 ~~~~~~~~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~  246 (383)
T 3ulq_A          175 EHEAYNIRLLQCHSLFATNFLDLKQYE--------DAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY  246 (383)
T ss_dssp             TCSTTHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hCccchHHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            321     3457777888888999866        69999999998755432      4889999999999999999999


Q ss_pred             HHHHHhc-----C-CCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHH
Q 036703          230 YERAIAN-----V-PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMEL  302 (365)
Q Consensus       230 ~~~~~~~-----~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~  302 (365)
                      |++++..     . |..         ..++..+|..+ ...|++++|+..+++++...+....  |. ...+..++.++.
T Consensus       247 ~~~al~~~~~~~~~~~~---------~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~l~~~~~  314 (383)
T 3ulq_A          247 FKRAIAVFEESNILPSL---------PQAYFLITQIH-YKLGKIDKAHEYHSKGMAYSQKAGD--VIYLSEFEFLKSLYL  314 (383)
T ss_dssp             HHHHHHHHHHTTCGGGH---------HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhccchhH---------HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHh
Confidence            9999984     3 332         44788888887 6999999999999999998543221  32 333567888888


Q ss_pred             HhCC---CccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          303 CLGN---IDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       303 ~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      ..|+   +++|..++++. ...|....++..++.++...|++++|...|+++++...
T Consensus       315 ~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          315 SGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             SSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            8898   88888888887 44566777999999999999999999999999988664

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.87  E-value=5.3e-21  Score=159.05  Aligned_cols=256  Identities=14%  Similarity=0.091  Sum_probs=192.6

Q ss_pred             hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC----ChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703           82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD----DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus        82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      .+|....++..+|.++...|++++|+..|+++++. ...    +.+....++..+|.++.   ..|++++|+..|++++.
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~   97 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALED-LEKTSGHDHPDVATMLNILALVYR---DQNKYKDAANLLNDALA   97 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHCSSSHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHH
Confidence            45667889999999999999999999999999985 321    12455889999999999   99999999999999998


Q ss_pred             cC-----CC-chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCCH
Q 036703          158 RI-----PK-GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN--------PMNYDTWFDYIRLEERVGNQ  223 (365)
Q Consensus       158 ~~-----p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~~  223 (365)
                      ..     +. ......+..++.++...|+.+        +|...|++++...        |....++..+|.++...|++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  169 (311)
T 3nf1_A           98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYK--------EAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY  169 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH--------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHcCcHH--------HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCH
Confidence            63     22 224678888888888899866        6888898888764        45567899999999999999


Q ss_pred             HHHHHHHHHHHhcC-----CCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcccc---------CCCcch
Q 036703          224 ERVREVYERAIANV-----PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFS---------FSPRME  289 (365)
Q Consensus       224 ~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~---------~~~~~~  289 (365)
                      ++|+..|++++...     +.++.      ...++..++.++ ...|++++|+..+++++...+.         ....|.
T Consensus       170 ~~A~~~~~~a~~~~~~~~~~~~~~------~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~  242 (311)
T 3nf1_A          170 EEVEYYYQRALEIYQTKLGPDDPN------VAKTKNNLASCY-LKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM  242 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTSCTTCHH------HHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence            99999999999871     11221      144778888887 5899999999999999986321         111111


Q ss_pred             hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          290 ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      ....+...+......+.+.+|...++++....|....++..++.++...|++++|...|+++++..|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            2334444555566788899999999999999999999999999999999999999999999998876

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.87  E-value=4e-19  Score=144.89  Aligned_cols=222  Identities=10%  Similarity=0.031  Sum_probs=198.6

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC--ChhHHHHHHHHHHhhCCC-hHHHHHHHHHH----HHh---ccHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG--NVAGARQIFERWMHWMPD-HEGWLSYIKFK----LRY---NEVQRA   72 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~-~~~~~~~~~~~----~~~---~~~~~A   72 (365)
                      ++|..++++++.++|++..+|...+.+....|  ++++++..+++++..+|. ..+|...+.+.    ...   ++++++
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E  129 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE  129 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence            58999999999999999999999999999999  999999999999999999 78999988887    556   789999


Q ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHhhcchH--HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch------
Q 036703           73 RHIFERLVQCHPYNLSAWINFADFEMKMGEVD--RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE------  144 (365)
Q Consensus        73 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~--~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  144 (365)
                      +.++.++++.+|.+..+|...+-+....|.++  +++++++++++. .|.+    ..+|...+.+..   ..+.      
T Consensus       130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d~~N----~sAW~~R~~ll~---~l~~~~~~~~  201 (306)
T 3dra_A          130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-DLKN----NSAWSHRFFLLF---SKKHLATDNT  201 (306)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---SSGGGCCHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---hccccchhhh
Confidence            99999999999999999999999999999988  999999999999 9998    999999999998   8887      


Q ss_pred             hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhC
Q 036703          145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN---PMNYDTWFDYIRLEERVG  221 (365)
Q Consensus       145 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~---p~~~~~~~~~~~~~~~~~  221 (365)
                      ++++++.++++|..+|.+  ...|.-...+....|....       .....+++++..+   |.++.++..++.++...|
T Consensus       202 ~~eEl~~~~~aI~~~p~n--~SaW~y~~~ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~  272 (306)
T 3dra_A          202 IDEELNYVKDKIVKCPQN--PSTWNYLLGIHERFDRSIT-------QLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK  272 (306)
T ss_dssp             HHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCCGG-------GGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCC--ccHHHHHHHHHHhcCCChH-------HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence            999999999999999998  5677777777777776432       3445666666655   889999999999999999


Q ss_pred             CHHHHHHHHHHHHh-cCCCch
Q 036703          222 NQERVREVYERAIA-NVPPAE  241 (365)
Q Consensus       222 ~~~~A~~~~~~~~~-~~p~~~  241 (365)
                      +.++|+++|+++.. .+|-..
T Consensus       273 ~~~~A~~~~~~l~~~~Dpir~  293 (306)
T 3dra_A          273 KYNESRTVYDLLKSKYNPIRS  293 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGH
T ss_pred             CHHHHHHHHHHHHhccChHHH
Confidence            99999999999997 588764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.86  E-value=9.8e-21  Score=172.65  Aligned_cols=174  Identities=14%  Similarity=0.179  Sum_probs=163.9

Q ss_pred             hCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHH
Q 036703           49 WMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQ  127 (365)
Q Consensus        49 ~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  127 (365)
                      ..|+ ..++..+|.++..+|++++|+..|+++++.+|++..++..+|.++.+.|++++|+..|+++++. .|++    ..
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-~P~~----~~   78 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPTF----AD   78 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HH
Confidence            3576 6899999999999999999999999999999999999999999999999999999999999999 9988    99


Q ss_pred             HHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH
Q 036703          128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY  207 (365)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~  207 (365)
                      +|..+|.++.   .+|++++|++.|+++++..|.+  ...+..++..+...|+.+        +|+..|+++++.+|++.
T Consensus        79 a~~nLg~~l~---~~g~~~~A~~~~~kAl~l~P~~--~~a~~~Lg~~~~~~g~~~--------eAi~~~~~Al~l~P~~~  145 (723)
T 4gyw_A           79 AYSNMGNTLK---EMQDVQGALQCYTRAIQINPAF--ADAHSNLASIHKDSGNIP--------EAIASYRTALKLKPDFP  145 (723)
T ss_dssp             HHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCSCCH
T ss_pred             HHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCh
Confidence            9999999999   9999999999999999999987  688999999999999866        79999999999999999


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          208 DTWFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      .++..++.++...|++++|.+.++++++..|+.
T Consensus       146 ~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          146 DAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            999999999999999999999999999876553

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.86  E-value=8.6e-19  Score=149.75  Aligned_cols=312  Identities=12%  Similarity=0.036  Sum_probs=234.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch------
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH------EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL------   87 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------   87 (365)
                      ..++...+.++...|++++|+..+++++...|..      .++..++.++...|++++|...+++++...|...      
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            3556778889999999999999999999988762      2566778889999999999999999998766432      


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC----hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703           88 SAWINFADFEMKMGEVDRARNVYECAVEIFLADD----HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      .++..+|.++...|++++|+..+++++.. .+..    ++....++..++.++.   ..|++++|...+++++...+...
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~  169 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQL-INEQHLEQLPMHEFLVRIRAQLLW---AWARLDEAEASARSGIEVLSSYQ  169 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCTTSTHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHhccccCcHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHhhccC
Confidence            33678899999999999999999999987 5321    1234667888999999   99999999999999998776421


Q ss_pred             ---hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC--CCHHHHH-----HHHHHHHHhCCHHHHHHHHHHH
Q 036703          164 ---AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP--MNYDTWF-----DYIRLEERVGNQERVREVYERA  233 (365)
Q Consensus       164 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p--~~~~~~~-----~~~~~~~~~~~~~~A~~~~~~~  233 (365)
                         ....+..++.++...|+.+        +|...+++++...+  .....|.     ..+.++...|++++|...++++
T Consensus       170 ~~~~~~~~~~la~~~~~~g~~~--------~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  241 (373)
T 1hz4_A          170 PQQQLQCLAMLIQCSLARGDLD--------NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT  241 (373)
T ss_dssp             GGGGHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence               2456777788888889866        68999999887532  2222232     2345577899999999999999


Q ss_pred             HhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHH
Q 036703          234 IANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRK  312 (365)
Q Consensus       234 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~  312 (365)
                      +...|......     ...+..++..+ ...|++++|...+++++...+..... +. ..++..++.++...|++++|..
T Consensus       242 ~~~~~~~~~~~-----~~~~~~la~~~-~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~  314 (373)
T 1hz4_A          242 AKPEFANNHFL-----QGQWRNIARAQ-ILLGEFEPAEIVLEELNENARSLRLM-SDLNRNLLLLNQLYWQAGRKSDAQR  314 (373)
T ss_dssp             CCCCCTTCGGG-----HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCCCCCcchhh-----HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHhCCHHHHHH
Confidence            98766432100     12455677776 58899999999999999875443221 22 4577888999999999999999


Q ss_pred             HHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCC
Q 036703          313 LYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPIL  357 (365)
Q Consensus       313 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~  357 (365)
                      .+++++...+..     .+..+....|  .....++++.+...|.
T Consensus       315 ~l~~al~~~~~~-----g~~~~~~~~g--~~~~~ll~~~~~~~~~  352 (373)
T 1hz4_A          315 VLLDALKLANRT-----GFISHFVIEG--EAMAQQLRQLIQLNTL  352 (373)
T ss_dssp             HHHHHHHHHHHH-----CCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHhccc-----cHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence            999999876532     1223333444  5666677777776664

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.86  E-value=3.1e-20  Score=154.37  Aligned_cols=249  Identities=12%  Similarity=0.074  Sum_probs=182.7

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhh-----c
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQC--------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFL-----A  119 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~  119 (365)
                      ..+|..++.++...|++++|...|+++++.        .|....++..+|.++...|++++|+..|++++.. .     +
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~  105 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI-REKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHhCC
Confidence            466777778888888888888888888774        5666788889999999999999999999999887 5     3


Q ss_pred             CChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC-----CC-chhHHHHHHHHHHHHHcCCchhhhHHHHHHHH
Q 036703          120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI-----PK-GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMR  193 (365)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  193 (365)
                      ++ +....++..++.++.   ..|++++|+..|+++++..     +. ......+..++.++...|+.+        +|+
T Consensus       106 ~~-~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--------~A~  173 (311)
T 3nf1_A          106 DH-PAVAATLNNLAVLYG---KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE--------EVE  173 (311)
T ss_dssp             TC-HHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH--------HHH
T ss_pred             CC-hHHHHHHHHHHHHHH---HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH--------HHH
Confidence            32 455889999999999   9999999999999999864     22 224667888888888889865        699


Q ss_pred             HHHHHHHHc--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch-------hhhHHHHhHHHHHHHHH
Q 036703          194 LQYEDGVRK--------NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE-------EKRYWQRYIYLWINYAL  258 (365)
Q Consensus       194 ~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~~~~~~~~~~~~~  258 (365)
                      ..|++++..        .|....++..++.++...|++++|...|++++...|...       ....|. ....+...+.
T Consensus       174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  252 (311)
T 3nf1_A          174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-HAEEREECKG  252 (311)
T ss_dssp             HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-HHHHHHHC--
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-HHHHHHHhcC
Confidence            999999887        666678899999999999999999999999997643311       000000 0112222222


Q ss_pred             HHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc
Q 036703          259 YKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE  323 (365)
Q Consensus       259 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  323 (365)
                      .. ...+.+.++...++++....       |. ..++..+|.++...|++++|.++|++++++.|+
T Consensus       253 ~~-~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          253 KQ-KDGTSFGEYGGWYKACKVDS-------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             ------CCSCCCC---------C-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             ch-hhHHHHHHHHHHHhhcCCCC-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            32 24566777888888888765       54 788999999999999999999999999998774

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.85  E-value=2.4e-19  Score=156.55  Aligned_cols=304  Identities=9%  Similarity=-0.011  Sum_probs=200.6

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-----ChhHHHHHHHHHHhhCCC------------------------
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG-----NVAGARQIFERWMHWMPD------------------------   52 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g-----~~~~A~~~~~~al~~~p~------------------------   52 (365)
                      +++|+..|++++..   ++.++..+|.++...|     ++++|...|+++++..+.                        
T Consensus        54 ~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~  130 (452)
T 3e4b_A           54 IKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQ  130 (452)
T ss_dssp             --------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHH
T ss_pred             HHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence            46777777777755   4566777777555554     566777777777763321                        


Q ss_pred             ----------hHHHHHHHHHHHHhc----cHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc---chHHHHHHHHHHHh
Q 036703           53 ----------HEGWLSYIKFKLRYN----EVQRARHIFERLVQCHPYNLSAWINFADFEMKMG---EVDRARNVYECAVE  115 (365)
Q Consensus        53 ----------~~~~~~~~~~~~~~~----~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~  115 (365)
                                +.++..++.++...+    +.+.+..+++.+...+|   .++..+|.++...|   +.++|+..|+++.+
T Consensus       131 ~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~  207 (452)
T 3e4b_A          131 QISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGVS  207 (452)
T ss_dssp             HHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHHH
Confidence                      223333444444433    33444444555444444   48889999999999   99999999999999


Q ss_pred             hhhcCChhhHHHHHHHHHHHHHhcccc----chhHHHHHHHHHHhccCCCchhHHHHHHHHHH-H--HHcCCchhhhHHH
Q 036703          116 IFLADDHDEAEQLFVAFAKFEEMGCNC----KETDRARCIYKFALDRIPKGRAEDLYRKFLAF-E--KQYGDREGIEDAI  188 (365)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~  188 (365)
                      . .|..    ...+..++.++.   ..    +++++|+..|+++.   |.+  ...+..++.+ +  ...++        
T Consensus       208 ~-g~~~----a~~~~~Lg~~y~---~g~~~~~d~~~A~~~~~~aa---~g~--~~a~~~Lg~~~~~~~~~~d--------  266 (452)
T 3e4b_A          208 R-GTVT----AQRVDSVARVLG---DATLGTPDEKTAQALLEKIA---PGY--PASWVSLAQLLYDFPELGD--------  266 (452)
T ss_dssp             T-TCSC----HHHHHHHHHHHT---CGGGSSCCHHHHHHHHHHHG---GGS--THHHHHHHHHHHHSGGGCC--------
T ss_pred             C-CCHH----HHHHHHHHHHHh---CCCCCCCCHHHHHHHHHHHc---CCC--HHHHHHHHHHHHhCCCCCC--------
Confidence            9 7777    777788999887   55    78999999999988   554  4566666665 3  23444        


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc
Q 036703          189 AGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVG-----NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD  263 (365)
Q Consensus       189 ~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  263 (365)
                      .++|+..|+++.+.  .++.+++.+|.++. .|     ++++|+..|+++.   |.++         ..+..++.++...
T Consensus       267 ~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~---------~A~~~Lg~~y~~G  331 (452)
T 3e4b_A          267 VEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREV---------AADYYLGQIYRRG  331 (452)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCH---------HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCH---------HHHHHHHHHHHCC
Confidence            34799999998864  58899999999987 55     9999999999998   5553         3667777776321


Q ss_pred             ---cCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH----hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703          264 ---AGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC----LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK  336 (365)
Q Consensus       264 ---~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  336 (365)
                         ..++++|+..|+++.+..        ++.....+|.++..    ..++.+|..+|+++.+..+.............+
T Consensus       332 ~g~~~d~~~A~~~~~~Aa~~g--------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~  403 (452)
T 3e4b_A          332 YLGKVYPQKALDHLLTAARNG--------QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPL  403 (452)
T ss_dssp             TTSSCCHHHHHHHHHHHHTTT--------CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTC
T ss_pred             CCCCcCHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence               238999999999998862        24456778888764    458889999999998876544444444333344


Q ss_pred             hccchhHHHHHHHHHhcCc
Q 036703          337 SLDETERARAIFELAIAQP  355 (365)
Q Consensus       337 ~~g~~~~A~~~~~~a~~~~  355 (365)
                      ..++..+|..+.++..+..
T Consensus       404 ~~~~~~~a~~~~~~~~~~~  422 (452)
T 3e4b_A          404 TPAQRAEGQRLVQQELAAR  422 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhc
Confidence            5567778888877665543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.85  E-value=1.8e-19  Score=146.00  Aligned_cols=196  Identities=15%  Similarity=0.072  Sum_probs=147.6

Q ss_pred             hhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh
Q 036703           48 HWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD  123 (365)
Q Consensus        48 ~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  123 (365)
                      ...|+ ...+...|..+...|++++|+..|++++..+|++   +.++..+|.++...|++++|+..|+++++. .|.+ +
T Consensus         9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-~p~~-~   86 (261)
T 3qky_A            9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI-YQID-P   86 (261)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC-T
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-CCCC-c
Confidence            34555 6788888888888899999999999999888887   888999999999999999999999999999 8875 5


Q ss_pred             hHHHHHHHHHHHHHhccc--------cchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHH
Q 036703          124 EAEQLFVAFAKFEEMGCN--------CKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ  195 (365)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  195 (365)
                      ..+.+++.+|.++.   .        .|++++|+..|+++++..|.+..  .+.....+..               .   
T Consensus        87 ~~~~a~~~lg~~~~---~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--~~~a~~~~~~---------------~---  143 (261)
T 3qky_A           87 RVPQAEYERAMCYY---KLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--VDDATQKIRE---------------L---  143 (261)
T ss_dssp             THHHHHHHHHHHHH---HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--HHHHHHHHHH---------------H---
T ss_pred             hhHHHHHHHHHHHH---HhcccccccchhHHHHHHHHHHHHHHCcCchh--HHHHHHHHHH---------------H---
Confidence            56788999999998   8        99999999999999999998642  2221111110               0   


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhcc----------C
Q 036703          196 YEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDA----------G  265 (365)
Q Consensus       196 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------~  265 (365)
                             .+.....++.+|.++...|++++|+..|+++++..|+++..      ...+..++..+ ...          |
T Consensus       144 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------~~a~~~l~~~~-~~~g~~~~~~~~~~  209 (261)
T 3qky_A          144 -------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWA------DDALVGAMRAY-IAYAEQSVRARQPE  209 (261)
T ss_dssp             -------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH------HHHHHHHHHHH-HHHHHTSCGGGHHH
T ss_pred             -------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchH------HHHHHHHHHHH-HHhcccchhhcccc
Confidence                   01112448889999999999999999999999999986421      23555666655 233          5


Q ss_pred             ChhHHHHHHHHHHhccc
Q 036703          266 DLERTRDVYRTLFIFYF  282 (365)
Q Consensus       266 ~~~~a~~~~~~a~~~~~  282 (365)
                      ++++|+..|+++++..|
T Consensus       210 ~~~~A~~~~~~~~~~~p  226 (261)
T 3qky_A          210 RYRRAVELYERLLQIFP  226 (261)
T ss_dssp             HHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHCC
Confidence            55666666666666553

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.84  E-value=3.1e-19  Score=144.62  Aligned_cols=207  Identities=15%  Similarity=0.071  Sum_probs=165.7

Q ss_pred             HHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--
Q 036703           13 VTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN--   86 (365)
Q Consensus        13 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--   86 (365)
                      ....|.++..++.+|..+...|++++|+..|+++++.+|+    ..+|..+|.++...|++++|+..|+++++.+|++  
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            4568899999999999999999999999999999999987    5789999999999999999999999999998854  


Q ss_pred             -hHHHHHHHHHHHh--------hcchHHHHHHHHHHHhhhhcCChhhHHHHH--------------HHHHHHHHhccccc
Q 036703           87 -LSAWINFADFEMK--------MGEVDRARNVYECAVEIFLADDHDEAEQLF--------------VAFAKFEEMGCNCK  143 (365)
Q Consensus        87 -~~~~~~~~~~~~~--------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~  143 (365)
                       +.++..+|.++..        .|++++|+..|+++++. .|++ +....+.              +.+|.++.   ..|
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~p~~-~~~~~a~~~~~~~~~~~~~~~~~la~~~~---~~g  162 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-YPNH-ELVDDATQKIRELRAKLARKQYEAARLYE---RRE  162 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-CTTC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTT
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-CcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hcc
Confidence             6789999999999        99999999999999999 9986 2223333              78899999   999


Q ss_pred             hhHHHHHHHHHHhccCCCch-hHHHHHHHHHHHHHcCCchh--hhHHHHHHHHHHHHHHHHcCCCCHH---HHHHHHHHH
Q 036703          144 ETDRARCIYKFALDRIPKGR-AEDLYRKFLAFEKQYGDREG--IEDAIAGKMRLQYEDGVRKNPMNYD---TWFDYIRLE  217 (365)
Q Consensus       144 ~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~l~~~p~~~~---~~~~~~~~~  217 (365)
                      ++++|+..|+++++..|.+. ....+..++..+...|+...  ......++|+..|+++++.+|+++.   +...++.+.
T Consensus       163 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~  242 (261)
T 3qky_A          163 LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRAR  242 (261)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence            99999999999999999854 35677777777765533210  0111245799999999999999854   344445555


Q ss_pred             HHhCCHH
Q 036703          218 ERVGNQE  224 (365)
Q Consensus       218 ~~~~~~~  224 (365)
                      ...++++
T Consensus       243 ~~~~~~~  249 (261)
T 3qky_A          243 QRLTELE  249 (261)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            4444443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.84  E-value=2.2e-18  Score=147.49  Aligned_cols=297  Identities=10%  Similarity=0.038  Sum_probs=216.6

Q ss_pred             ChhhHHHHHHHHHHhCCC---chHHH--HHHHHH--HHhcCChhHHH---------HHHHHHHhhCCC------hHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPR---VDQLW--NNYIRM--EENLGNVAGAR---------QIFERWMHWMPD------HEGWLS   58 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~---~~~~~--~~~~~~--~~~~g~~~~A~---------~~~~~al~~~p~------~~~~~~   58 (365)
                      ++++|..+++++....+.   +..+.  +.+..+  ..-.+.+..+.         ..+++.-.....      ...+..
T Consensus        27 ~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~  106 (378)
T 3q15_A           27 SVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFF  106 (378)
T ss_dssp             CHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHHH
Confidence            567899999887654322   33333  333222  22223333333         555554322111      124566


Q ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC------cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHHHH
Q 036703           59 YIKFKLRYNEVQRARHIFERLVQCHP------YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQLF  129 (365)
Q Consensus        59 ~~~~~~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~  129 (365)
                      .|..+...|++++|...|++++...+      ....++..+|.++...|+++.|+..++++++. .+..   ......++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI-YQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-HHhCCCchhhHHHHH
Confidence            78888999999999999999998632      24678999999999999999999999999998 7653   12346788


Q ss_pred             HHHHHHHHhccccchhHHHHHHHHHHhccCCC---c-hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH----
Q 036703          130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPK---G-RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR----  201 (365)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~----  201 (365)
                      ..+|.++.   ..|++++|+..|+++++..+.   . ....++..++.++...|+.+        +|+..|++++.    
T Consensus       186 ~~lg~~y~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~--------~A~~~~~~al~~~~~  254 (378)
T 3q15_A          186 FVIAGNYD---DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ--------MAVEHFQKAAKVSRE  254 (378)
T ss_dssp             HHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHHHh
Confidence            89999999   999999999999999985432   1 23457778888888899866        79999999999    


Q ss_pred             -cCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC---hhHHHHHHHHH
Q 036703          202 -KNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD---LERTRDVYRTL  277 (365)
Q Consensus       202 -~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~a  277 (365)
                       .+|....++..+|.++...|++++|...+++++...+......    +...+..++..+ ...++   +.+|+..+++.
T Consensus       255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~l~~ly-~~~~~~~~~~~al~~~~~~  329 (378)
T 3q15_A          255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF----YKELFLFLQAVY-KETVDERKIHDLLSYFEKK  329 (378)
T ss_dssp             HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC----HHHHHHHHHHHH-SSSCCHHHHHHHHHHHHHT
T ss_pred             hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH----HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHhC
Confidence             7888889999999999999999999999999999865422111    112334455555 36677   67777777763


Q ss_pred             HhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc
Q 036703          278 FIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP  322 (365)
Q Consensus       278 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  322 (365)
                      -..        |. ..++..+|.++...|++++|...|+++++...
T Consensus       330 ~~~--------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  367 (378)
T 3q15_A          330 NLH--------AYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE  367 (378)
T ss_dssp             TCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCh--------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            221        44 67788899999999999999999999987643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.84  E-value=3.2e-18  Score=160.13  Aligned_cols=266  Identities=9%  Similarity=0.051  Sum_probs=161.1

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703           18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE   97 (365)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~   97 (365)
                      +++.+|..+|..+...|++++|+..|.++    .+...|...+.++.+.|++++|.+.|..+.+..+ ++.+-..+|..|
T Consensus      1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~-e~~Idt~LafaY 1177 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFAL 1177 (1630)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc-cccccHHHHHHH
Confidence            33445555555555555555555555443    2244444455555555555555555555554443 222222344444


Q ss_pred             HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q 036703           98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ  177 (365)
Q Consensus        98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  177 (365)
                      .+.+++++ .+.|   ++  .+ +    ...|...|..+.   ..|++++|...|.++          ..|..++..+.+
T Consensus      1178 AKl~rlee-le~f---I~--~~-n----~ad~~~iGd~le---~eg~YeeA~~~Y~kA----------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A         1178 AKTNRLAE-LEEF---IN--GP-N----NAHIQQVGDRCY---DEKMYDAAKLLYNNV----------SNFGRLASTLVH 1233 (1630)
T ss_pred             HhhcCHHH-HHHH---Hh--CC-C----HHHHHHHHHHHH---hcCCHHHHHHHHHhh----------hHHHHHHHHHHH
Confidence            44444442 2211   11  11 1    233445666666   666777777776664          245555555556


Q ss_pred             cCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH
Q 036703          178 YGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA  257 (365)
Q Consensus       178 ~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  257 (365)
                      .|+.+        .|++.++++     ++..+|...+..+...|++..|..+... +..+|+.            +-..+
T Consensus      1234 Lge~q--------~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~de------------Leeli 1287 (1630)
T 1xi4_A         1234 LGEYQ--------AAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE------------LEELI 1287 (1630)
T ss_pred             hCCHH--------HHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHH------------HHHHH
Confidence            66533        566666665     4456677666666666777766665553 3334442            23456


Q ss_pred             HHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHH--HhCCCccHHHHHHHHHhhCc-----chHHHHH
Q 036703          258 LYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMEL--CLGNIDPCRKLYEKYLEWSP-----ENCYAWS  329 (365)
Q Consensus       258 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p-----~~~~~~~  329 (365)
                      .+|+ ..|.+++|+.++++++..+       |. ..+|..++.++.  +-++..++.+.|...+...|     .+..+|.
T Consensus      1288 ~yYe-~~G~feEAI~LlE~aL~Le-------raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~ 1359 (1630)
T 1xi4_A         1288 NYYQ-DRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 1359 (1630)
T ss_pred             HHHH-HcCCHHHHHHHHHHHhccC-------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHH
Confidence            6664 8899999999999999887       44 667777777776  45678888888888888777     6888999


Q ss_pred             HHHHHHhhccchhHHHH
Q 036703          330 KYTELEKSLDETERARA  346 (365)
Q Consensus       330 ~~~~~~~~~g~~~~A~~  346 (365)
                      .+..+|.+.|++++|..
T Consensus      1360 elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1360 ELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHHHHhcccHHHHHH
Confidence            99999999999998883

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.84  E-value=1.8e-19  Score=148.36  Aligned_cols=264  Identities=12%  Similarity=0.039  Sum_probs=187.3

Q ss_pred             HHHHHHHHHHhhCCC-hHHHHHHHHHHHH--hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703           38 GARQIFERWMHWMPD-HEGWLSYIKFKLR--YNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV  114 (365)
Q Consensus        38 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~--~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  114 (365)
                      +|.+++.++-+.-+. ...| .+   +..  .+++++|...|.++              +.++...|++++|+..|++++
T Consensus         3 ~a~~~~~~a~k~~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al   64 (292)
T 1qqe_A            3 DPVELLKRAEKKGVPSSGFM-KL---FSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAA   64 (292)
T ss_dssp             CHHHHHHHHHHHSSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCcCCCcc-hh---cCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Confidence            466777777766655 2333 22   111  22477788877776              445677888888888888888


Q ss_pred             hhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch----hHHHHHHHHHHHHHc-CCchhhhHH
Q 036703          115 EIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR----AEDLYRKFLAFEKQY-GDREGIEDA  187 (365)
Q Consensus       115 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~-~~~~~~~~~  187 (365)
                      +. .+..  ......++..+|.++.   ..|++++|+..|++++...|...    ....+..++.++... |+.+     
T Consensus        65 ~~-~~~~~~~~~~a~~~~~lg~~~~---~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~-----  135 (292)
T 1qqe_A           65 DY-QKKAGNEDEAGNTYVEAYKCFK---SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA-----  135 (292)
T ss_dssp             HH-HHHTTCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-----
T ss_pred             HH-HHHhCCHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH-----
Confidence            77 5421  1233667888888888   88888888888888888665421    245677788888885 8865     


Q ss_pred             HHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHh
Q 036703          188 IAGKMRLQYEDGVRKNPMN------YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKE  261 (365)
Q Consensus       188 ~~~~a~~~~~~~l~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  261 (365)
                         +|+..|+++++..|.+      ..++..+|.++...|++++|+..|++++...|.+.....  .....+...+.++ 
T Consensus       136 ---~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~lg~~~-  209 (292)
T 1qqe_A          136 ---KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW--SLKDYFLKKGLCQ-  209 (292)
T ss_dssp             ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG--GHHHHHHHHHHHH-
T ss_pred             ---HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH--HHHHHHHHHHHHH-
Confidence               7999999999987754      467899999999999999999999999999887643110  0122566777776 


Q ss_pred             hccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHH--HhCCCccHHHHHHHHHhhCcchHHHHHHHHHHH
Q 036703          262 VDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMEL--CLGNIDPCRKLYEKYLEWSPENCYAWSKYTELE  335 (365)
Q Consensus       262 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  335 (365)
                      ...|++++|+..|++++...|..... .....+..++..+.  ..+++++|+..|++++.++|.+..++...-...
T Consensus       210 ~~~g~~~~A~~~~~~al~l~p~~~~~-~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          210 LAATDAVAAARTLQEGQSEDPNFADS-RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI  284 (292)
T ss_dssp             HHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            58999999999999999998665332 11334455555554  457799999999999999998877776655444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.84  E-value=2.1e-21  Score=163.08  Aligned_cols=279  Identities=10%  Similarity=0.050  Sum_probs=142.8

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      +++|.+.+++.     +.+.+|..+|..+...|++++|+..|.++    ++...|...+..+...|++++|+.+++.+++
T Consensus        19 ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark   89 (449)
T 1b89_A           19 LDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARK   89 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            57788888877     22569999999999999999999999875    5666888889899999999999999999998


Q ss_pred             hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703           82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus        82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                      ..+ ++.+...++.+|.+.|+++++.++++      .|+     ...|..+|..+.   ..|.+++|+..|.++      
T Consensus        90 ~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn-----~~a~~~IGd~~~---~~g~yeeA~~~Y~~a------  148 (449)
T 1b89_A           90 KAR-ESYVETELIFALAKTNRLAELEEFIN------GPN-----NAHIQQVGDRCY---DEKMYDAAKLLYNNV------  148 (449)
T ss_dssp             --------------------CHHHHTTTTT------CC------------------------CTTTHHHHHHHT------
T ss_pred             hCc-cchhHHHHHHHHHHhCCHHHHHHHHc------CCc-----HHHHHHHHHHHH---HcCCHHHHHHHHHHh------
Confidence            755 58888999999999999999887774      233     459999999999   999999999999976      


Q ss_pred             chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703          162 GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE  241 (365)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  241 (365)
                          ..|..++..+.+.|+++        .|.+.|+++     +++.+|...+..+...|+++.|..+... +...|++ 
T Consensus       149 ----~n~~~LA~~L~~Lg~yq--------~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~-  209 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQ--------AAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE-  209 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHH--------HHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH-
T ss_pred             ----hhHHHHHHHHHHhccHH--------HHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh-
Confidence                25888888888999866        699999998     5789999999999999999999777665 3355543 


Q ss_pred             hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHH--HhCCCccHHHHHHHHH
Q 036703          242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMEL--CLGNIDPCRKLYEKYL  318 (365)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~A~~~~~~al  318 (365)
                                 ....+.+| ...|.+++|+.++++++...       +. ..+|..++.++.  +.++..+..+.|...+
T Consensus       210 -----------l~~lv~~Y-ek~G~~eEai~lLe~aL~le-------~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i  270 (449)
T 1b89_A          210 -----------LEELINYY-QDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKFKPQKMREHLELFWSRV  270 (449)
T ss_dssp             -----------HHHHHHHH-HHTTCHHHHHHHHHHHTTST-------TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS
T ss_pred             -----------HHHHHHHH-HHCCCHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence                       12355666 48999999999999999986       33 678888888886  4677888888888888


Q ss_pred             hhCc-----chHHHHHHHHHHHhhccchhHHHHHH
Q 036703          319 EWSP-----ENCYAWSKYTELEKSLDETERARAIF  348 (365)
Q Consensus       319 ~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~  348 (365)
                      .+.|     .+..+|..+..++...|+++.|...+
T Consensus       271 ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          271 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            8888     88999999999999999999998754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.83  E-value=1.8e-19  Score=147.60  Aligned_cols=229  Identities=16%  Similarity=0.132  Sum_probs=175.8

Q ss_pred             hhhHHHHHHHHHHh--------CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhC--------CC-hHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTL--------SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWM--------PD-HEGWLSYIKFKL   64 (365)
Q Consensus         2 ~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~-~~~~~~~~~~~~   64 (365)
                      +++|+..|+++++.        .|....++..+|.++...|++++|+..|+++++..        |. ..++..++.++.
T Consensus        17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~   96 (283)
T 3edt_B           17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG   96 (283)
T ss_dssp             SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence            56777888887773        36678889999999999999999999999999873        33 578999999999


Q ss_pred             HhccHHHHHHHHHHHHHh--------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhh----cCChhhHHHHHHHH
Q 036703           65 RYNEVQRARHIFERLVQC--------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFL----ADDHDEAEQLFVAF  132 (365)
Q Consensus        65 ~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~~~~~~~  132 (365)
                      ..|++++|...|++++..        +|....++..+|.++...|++++|+..|+++++. .    +.+++....++..+
T Consensus        97 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~l  175 (283)
T 3edt_B           97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI-YATRLGPDDPNVAKTKNNL  175 (283)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHHSCTTCHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHH
Confidence            999999999999999987        4777889999999999999999999999999986 3    11125567899999


Q ss_pred             HHHHHhccccchhHHHHHHHHHHhccCCC-------chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC
Q 036703          133 AKFEEMGCNCKETDRARCIYKFALDRIPK-------GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM  205 (365)
Q Consensus       133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~  205 (365)
                      |.++.   ..|++++|+..|+++++..+.       .....+|..........+......  ....+...++......|.
T Consensus       176 a~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  250 (283)
T 3edt_B          176 ASCYL---KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA--PYGEYGSWYKACKVDSPT  250 (283)
T ss_dssp             HHHHH---HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCCCCHH
T ss_pred             HHHHH---HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH--HHHHHHHHHHhcCCCCHH
Confidence            99999   999999999999999975321       112345555555554443332111  112333444443334566


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703          206 NYDTWFDYIRLEERVGNQERVREVYERAIAN  236 (365)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  236 (365)
                      ...++..+|.++...|++++|...|+++++.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6778999999999999999999999999875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.83  E-value=3.6e-19  Score=138.86  Aligned_cols=153  Identities=11%  Similarity=0.088  Sum_probs=135.5

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHH----------------HHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNN----------------YIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFK   63 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~----------------~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~   63 (365)
                      ++++|+..|+++++.+|+++.+|..                +|.++...|++++|+..|+++++.+|+ ..+|..+|.++
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   98 (208)
T 3urz_A           19 QNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQ   98 (208)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            5789999999999999999999999                999999999999999999999999999 89999999999


Q ss_pred             HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc
Q 036703           64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE--VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN  141 (365)
Q Consensus        64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (365)
                      ...|++++|+..|+++++.+|+++.+|..+|.++...|+  ...+...+.+++.. .|.     ...+...|..+.   .
T Consensus        99 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~a~~~~g~~~~---~  169 (208)
T 3urz_A           99 VCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP-TKM-----QYARYRDGLSKL---F  169 (208)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-CHH-----HHHHHHHHHHHH---H
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC-Cch-----hHHHHHHHHHHH---H
Confidence            999999999999999999999999999999999877654  45667777777544 322     446777888888   8


Q ss_pred             cchhHHHHHHHHHHhccCCCc
Q 036703          142 CKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       142 ~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      .|++++|+..|+++++..|+.
T Consensus       170 ~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          170 TTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHTHHHHHHHHHHHTTTSCCH
T ss_pred             ccCHHHHHHHHHHHHHhCCCH
Confidence            999999999999999999975

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.83  E-value=4.1e-18  Score=145.77  Aligned_cols=311  Identities=12%  Similarity=0.025  Sum_probs=226.7

Q ss_pred             hHHHHHHHHHH--HhcCChhHHHHHHHHHHhhCCC----hH--HHHHHHHH--HHHhccHHHHH---------HHHHHHH
Q 036703           20 DQLWNNYIRME--ENLGNVAGARQIFERWMHWMPD----HE--GWLSYIKF--KLRYNEVQRAR---------HIFERLV   80 (365)
Q Consensus        20 ~~~~~~~~~~~--~~~g~~~~A~~~~~~al~~~p~----~~--~~~~~~~~--~~~~~~~~~A~---------~~~~~~l   80 (365)
                      ..+-..+-..+  ...+++++|..+++++....+.    ..  .+..+..+  ....+++..+.         ..++++-
T Consensus        10 ~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~   89 (378)
T 3q15_A           10 SRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIE   89 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHh
Confidence            34444455555  6789999999999987654332    22  23333322  12222222222         5555532


Q ss_pred             HhCC-c----chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC--ChhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 036703           81 QCHP-Y----NLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD--DHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK  153 (365)
Q Consensus        81 ~~~p-~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  153 (365)
                      .... .    ....++..|..+...|++++|+..|+++++. .+.  +.+....++..+|.++.   ..|++++|+..++
T Consensus        90 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~a~~~~~lg~~y~---~~~~~~~A~~~~~  165 (378)
T 3q15_A           90 TPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKE-LPFVSDDIEKAEFHFKVAEAYY---HMKQTHVSMYHIL  165 (378)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-GGGCCCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHH
T ss_pred             ccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-HhhCCChHHHHHHHHHHHHHHH---HcCCcHHHHHHHH
Confidence            2111 1    1225667789999999999999999999987 543  12455788999999999   9999999999999


Q ss_pred             HHhccCCCc-----hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCC
Q 036703          154 FALDRIPKG-----RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM------NYDTWFDYIRLEERVGN  222 (365)
Q Consensus       154 ~~l~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~------~~~~~~~~~~~~~~~~~  222 (365)
                      +++...+..     .....+..++..+...|+++        +|...|++++...+.      ...++..+|.++...|+
T Consensus       166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~  237 (378)
T 3q15_A          166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD--------KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD  237 (378)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence            999864432     23567778888898999866        699999999885331      23578899999999999


Q ss_pred             HHHHHHHHHHHHh-----cCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHH
Q 036703          223 QERVREVYERAIA-----NVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKK  296 (365)
Q Consensus       223 ~~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~  296 (365)
                      +++|+..|++++.     ..|..         ...+..+|..+ ...|++++|+..+++++...+....  |. ...+..
T Consensus       238 ~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~  305 (378)
T 3q15_A          238 DQMAVEHFQKAAKVSREKVPDLL---------PKVLFGLSWTL-CKAGQTQKAFQFIEEGLDHITARSH--KFYKELFLF  305 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGH---------HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCTTCC--SCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCChhH---------HHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHH
Confidence            9999999999999     55544         34777888887 6999999999999999998544322  22 344566


Q ss_pred             HHHHHHHhCC---CccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          297 YIEMELCLGN---IDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       297 ~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      ++.++...|+   +.+|...+++. ...|....++..+|.++...|++++|...|+++++..
T Consensus       306 l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          306 LQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            7777777777   77888888773 3345567788999999999999999999999998654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.83  E-value=6.9e-20  Score=134.93  Aligned_cols=136  Identities=8%  Similarity=0.009  Sum_probs=127.9

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|+..|++++..+|+++..++.+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++
T Consensus        12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a   91 (150)
T 4ga2_A           12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRS   91 (150)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            3688999999999999999999999999999999999999999999999999 899999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHH-HHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNV-YECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE  144 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (365)
                      ++.+|+++.++..+|.++...|++++|... ++++++. .|.+    +.++...+.++.   ..|+
T Consensus        92 l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-~P~~----~~~~~l~~~ll~---~~G~  149 (150)
T 4ga2_A           92 VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-FPGS----PAVYKLKEQLLD---CEGE  149 (150)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---TCCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-CcCC----HHHHHHHHHHHH---HhCc
Confidence            999999999999999999999999877665 5999999 9998    999999999888   7764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.83  E-value=1.4e-17  Score=135.78  Aligned_cols=244  Identities=11%  Similarity=0.062  Sum_probs=201.4

Q ss_pred             HHHhccH-HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc--chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHH---
Q 036703           63 KLRYNEV-QRARHIFERLVQCHPYNLSAWINFADFEMKMG--EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFE---  136 (365)
Q Consensus        63 ~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---  136 (365)
                      ....|++ ++|+..+.+++.++|++..+|...+.++...|  .+++++++++.++.. +|.+    ..+|...+.+.   
T Consensus        42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-nPk~----y~aW~~R~~iL~~~  116 (306)
T 3dra_A           42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-NEKN----YQIWNYRQLIIGQI  116 (306)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-CTTC----CHHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-Cccc----HHHHHHHHHHHHHH
Confidence            3344444 68999999999999999999999999999988  999999999999999 9988    99999988888   


Q ss_pred             -Hhcccc---chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 036703          137 -EMGCNC---KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFD  212 (365)
Q Consensus       137 -~~~~~~---~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~  212 (365)
                       .   ..   +++++++..++++++.+|.+  ...|..-..+....|..+      ...++..++++++.+|.|..+|..
T Consensus       117 ~~---~l~~~~~~~~EL~~~~~~l~~~pkn--y~aW~~R~~vl~~l~~~~------~~~EL~~~~~~i~~d~~N~sAW~~  185 (306)
T 3dra_A          117 ME---LNNNDFDPYREFDILEAMLSSDPKN--HHVWSYRKWLVDTFDLHN------DAKELSFVDKVIDTDLKNNSAWSH  185 (306)
T ss_dssp             HH---HTTTCCCTHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCTT------CHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HH---hccccCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcccC------hHHHHHHHHHHHHhCCCCHHHHHH
Confidence             5   55   78999999999999999998  567777777777777654      115888999999999999999999


Q ss_pred             HHHHHHHhCC------HHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCC-hhHHHHHHHHHHhccccCC
Q 036703          213 YIRLEERVGN------QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGD-LERTRDVYRTLFIFYFSFS  285 (365)
Q Consensus       213 ~~~~~~~~~~------~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~a~~~~~~~~  285 (365)
                      .+.+....|.      ++++.+.+.+++..+|.+..         +|.....++. ..|+ .+....++.+++...... 
T Consensus       186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S---------aW~y~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~-  254 (306)
T 3dra_A          186 RFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS---------TWNYLLGIHE-RFDRSITQLEEFSLQFVDLEKDQ-  254 (306)
T ss_dssp             HHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH---------HHHHHHHHHH-HTTCCGGGGHHHHHTTEEGGGTE-
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc---------HHHHHHHHHH-hcCCChHHHHHHHHHHHhccCCC-
Confidence            9999888877      89999999999999999964         7877777763 5555 445666777777653110 


Q ss_pred             CcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHh-hCcchHHHHHHHHHHH
Q 036703          286 PRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLE-WSPENCYAWSKYTELE  335 (365)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~  335 (365)
                       + ..+..+..++.++.+.|+.++|.++|+++.+ .+|-....|...+..+
T Consensus       255 -~-~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l  303 (306)
T 3dra_A          255 -V-TSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKL  303 (306)
T ss_dssp             -E-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred             -C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence             0 2366788889999999999999999999997 7999999998876543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.83  E-value=1.1e-19  Score=166.65  Aligned_cols=186  Identities=12%  Similarity=-0.016  Sum_probs=169.1

Q ss_pred             hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHH--------hhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703           15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWM--------HWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY   85 (365)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al--------~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~   85 (365)
                      .+|+++.++...+   ...|++++|+..|++++        +.+|+ ..+|..++.++...|++++|+..|+++++.+|+
T Consensus       389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~  465 (681)
T 2pzi_A          389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW  465 (681)
T ss_dssp             CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence            4788888877766   78899999999999999        88898 789999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhH
Q 036703           86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE  165 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  165 (365)
                      +..+|..+|.++...|++++|+..|+++++. .|++    ..+|..+|.++.   ..|++++ +..|+++++..|.+  .
T Consensus       466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~----~~~~~~lg~~~~---~~g~~~~-~~~~~~al~~~P~~--~  534 (681)
T 2pzi_A          466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDT-FPGE----LAPKLALAATAE---LAGNTDE-HKFYQTVWSTNDGV--I  534 (681)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTC----SHHHHHHHHHHH---HHTCCCT-TCHHHHHHHHCTTC--H
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----hHHHHHHHHHHH---HcCChHH-HHHHHHHHHhCCch--H
Confidence            9999999999999999999999999999999 9988    999999999999   9999999 99999999999987  6


Q ss_pred             HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC
Q 036703          166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGN  222 (365)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  222 (365)
                      ..|..++..+...|+.+        +|+..|+++++.+|++..++..++.++...++
T Consensus       535 ~a~~~lg~~~~~~g~~~--------~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          535 SAAFGLARARSAEGDRV--------GAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHHHHHHHHTTCHH--------HHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHcCCHH--------HHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            78899999999999866        69999999999999999999999999866555

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=1.4e-18  Score=143.09  Aligned_cols=246  Identities=9%  Similarity=0.036  Sum_probs=189.5

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhc-C-ChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENL-G-NVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      .+|.+++.++-+..+.+...| .+   +... + ++++|...|+++             +.++...|++++|...|.+++
T Consensus         2 ~~a~~~~~~a~k~~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al   64 (292)
T 1qqe_A            2 SDPVELLKRAEKKGVPSSGFM-KL---FSGSDSYKFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAA   64 (292)
T ss_dssp             CCHHHHHHHHHHHSSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhCcCCCcc-hh---cCCCCCccHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHH
Confidence            468899999999888754444 22   2221 2 489999999988             556788999999999999999


Q ss_pred             HhCCc------chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhcccc-chhHHHHHH
Q 036703           81 QCHPY------NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNC-KETDRARCI  151 (365)
Q Consensus        81 ~~~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~  151 (365)
                      ...+.      ...++..+|.++...|++++|+..|+++++. .|..  ......++..+|.++.   .. |++++|+..
T Consensus        65 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~~~~g~~~~~a~~~~~lg~~~~---~~lg~~~~A~~~  140 (292)
T 1qqe_A           65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI-FTHRGQFRRGANFKFELGEILE---NDLHDYAKAIDC  140 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH---HTTCCHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHH---HhhcCHHHHHHH
Confidence            97532      2678999999999999999999999999998 7643  1223568899999999   96 999999999


Q ss_pred             HHHHhccCCCch----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHh
Q 036703          152 YKFALDRIPKGR----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD-------TWFDYIRLEERV  220 (365)
Q Consensus       152 ~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~-------~~~~~~~~~~~~  220 (365)
                      |+++++..|...    ....+..++.++...|+++        +|+..|++++...|++..       .+..+|.++...
T Consensus       141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~  212 (292)
T 1qqe_A          141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI--------EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA  212 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc
Confidence            999999876532    2457888899999999866        799999999999988653       578899999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHh-hccCChhHHHHHHHHHHhcc
Q 036703          221 GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKE-VDAGDLERTRDVYRTLFIFY  281 (365)
Q Consensus       221 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~a~~~~  281 (365)
                      |++++|+..|++++..+|.......    ...+..++..++ ...+++++|+..|++++..+
T Consensus       213 g~~~~A~~~~~~al~l~p~~~~~~~----~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~  270 (292)
T 1qqe_A          213 TDAVAAARTLQEGQSEDPNFADSRE----SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (292)
T ss_dssp             TCHHHHHHHHHGGGCC-------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             CCHHHHHHHHHHHHhhCCCCCCcHH----HHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence            9999999999999999987643211    112333333332 25678999999999998887

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.82  E-value=2.1e-17  Score=141.17  Aligned_cols=286  Identities=12%  Similarity=0.013  Sum_probs=217.5

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH-----HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCCh--hhHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS-----AWINFADFEMKMGEVDRARNVYECAVEIFLADDH--DEAE  126 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~  126 (365)
                      .++...+.++...|++++|...+++++...|.+..     ++..++.++...|++++|+..+++++.. .|...  ....
T Consensus        15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~   93 (373)
T 1hz4_A           15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM-ARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHhcCcHHHHH
Confidence            34566778888999999999999999998875432     5678889999999999999999999997 65431  1223


Q ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC------chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHH
Q 036703          127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK------GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGV  200 (365)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l  200 (365)
                      ..+..++.++.   ..|++++|+..+++++...+.      ......+..++.++...|+.+        .|...+++++
T Consensus        94 ~~~~~la~~~~---~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al  162 (373)
T 1hz4_A           94 WSLIQQSEILF---AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD--------EAEASARSGI  162 (373)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHH
Confidence            45678899999   999999999999999986421      112456666788888889866        6999999999


Q ss_pred             HcCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHH
Q 036703          201 RKNPMN-----YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR  275 (365)
Q Consensus       201 ~~~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  275 (365)
                      ...|..     ..++..++.++...|++++|...+++++...+.......|.  .......+..+ ...|++++|...++
T Consensus       163 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~g~~~~A~~~~~  239 (373)
T 1hz4_A          163 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI--SNANKVRVIYW-QMTGDKAAAANWLR  239 (373)
T ss_dssp             HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH--HHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred             HHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH--HHHHHHHHHHH-HHCCCHHHHHHHHH
Confidence            987753     35688899999999999999999999987633211100000  01111233333 47899999999999


Q ss_pred             HHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc------hHHHHHHHHHHHhhccchhHHHHHHH
Q 036703          276 TLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE------NCYAWSKYTELEKSLDETERARAIFE  349 (365)
Q Consensus       276 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~A~~~~~  349 (365)
                      +++...+....  .....+..++.++...|++++|...+++++...+.      ...++..++.++...|+.++|...++
T Consensus       240 ~a~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  317 (373)
T 1hz4_A          240 HTAKPEFANNH--FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL  317 (373)
T ss_dssp             HSCCCCCTTCG--GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hCCCCCCCcch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            99876533211  11345678899999999999999999999887442      23578888999999999999999999


Q ss_pred             HHhcCcC
Q 036703          350 LAIAQPI  356 (365)
Q Consensus       350 ~a~~~~~  356 (365)
                      +++...+
T Consensus       318 ~al~~~~  324 (373)
T 1hz4_A          318 DALKLAN  324 (373)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9987653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.82  E-value=4e-20  Score=136.17  Aligned_cols=146  Identities=13%  Similarity=0.054  Sum_probs=129.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcch
Q 036703           25 NYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEV  103 (365)
Q Consensus        25 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  103 (365)
                      .+|.++...|++++|+..+++++..+|+ +..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            3678888899999999999999998888 778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHH-HHHHhccCCCchhHHHHHHHHHHHHHcCC
Q 036703          104 DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCI-YKFALDRIPKGRAEDLYRKFLAFEKQYGD  180 (365)
Q Consensus       104 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  180 (365)
                      ++|+..|+++++. .|++    +.+|..+|.++.   ..|++++|... ++++++..|.+  ..++.....+....|+
T Consensus        82 ~~A~~~~~~al~~-~p~~----~~~~~~la~~~~---~~~~~~~aa~~~~~~al~l~P~~--~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVEL-NPTQ----KDLVLKIAELLC---KNDVTDGRAKYWVERAAKLFPGS--PAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHCSSSSHHHHHHHHHHHHSTTC--HHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HcCChHHHHHHHHHHHHHhCcCC--HHHHHHHHHHHHHhCc
Confidence            9999999999999 9998    999999999999   99999877665 69999999987  5677777777766664

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.82  E-value=3e-19  Score=163.67  Aligned_cols=169  Identities=11%  Similarity=-0.059  Sum_probs=155.4

Q ss_pred             ChhhHHHHHHHHH--------HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHH
Q 036703            1 FIDHGRNAWDRVV--------TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQR   71 (365)
Q Consensus         1 ~~~~A~~~~~~~l--------~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~   71 (365)
                      ++++|+..|++++        +.+|++..+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++
T Consensus       406 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  485 (681)
T 2pzi_A          406 QPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDS  485 (681)
T ss_dssp             CHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHH
Confidence            4689999999999        899999999999999999999999999999999999999 7899999999999999999


Q ss_pred             HHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHH
Q 036703           72 ARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCI  151 (365)
Q Consensus        72 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  151 (365)
                      |+..|+++++.+|+++.++..+|.++...|++++ +..|+++++. .|.+    ..+|..+|.++.   ..|++++|+..
T Consensus       486 A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~-~P~~----~~a~~~lg~~~~---~~g~~~~A~~~  556 (681)
T 2pzi_A          486 ATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST-NDGV----ISAAFGLARARS---AEGDRVGAVRT  556 (681)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh-CCch----HHHHHHHHHHHH---HcCCHHHHHHH
Confidence            9999999999999999999999999999999999 9999999999 9988    999999999999   99999999999


Q ss_pred             HHHHhccCCCchhHHHHHHHHHHHHHcCC
Q 036703          152 YKFALDRIPKGRAEDLYRKFLAFEKQYGD  180 (365)
Q Consensus       152 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  180 (365)
                      |+++++..|.+  ...+...+..+...+.
T Consensus       557 ~~~al~l~P~~--~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRHF--TTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTTH--HHHHHHHHHHTC----
T ss_pred             HHhhcccCccc--HHHHHHHHHHHHccCC
Confidence            99999999986  5677777666544443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.82  E-value=1.6e-18  Score=132.49  Aligned_cols=170  Identities=13%  Similarity=0.017  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      ...+..+|.++...|++++|+..|+++++..|. ...|..++.++...|++++|...++++++..|+++.++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            344555555555555555555555555555555 4555555555555555555555555555555555555555555555


Q ss_pred             hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHc
Q 036703           99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY  178 (365)
Q Consensus        99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  178 (365)
                      ..|++++|...++++++. .|.+    ..++..+|.++.   ..|++++|+.                            
T Consensus        88 ~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~~a~~~~---~~~~~~~A~~----------------------------  131 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEA-NPIN----FNVRFRLGVALD---NLGRFDEAID----------------------------  131 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHH----------------------------
T ss_pred             HhcCHHHHHHHHHHHHhc-CcHh----HHHHHHHHHHHH---HcCcHHHHHH----------------------------
Confidence            555555555555555555 5544    555555555555   5555555444                            


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703          179 GDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE  241 (365)
Q Consensus       179 ~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  241 (365)
                                      .+++++...|.+..++..++.++...|++++|...++++++..|.+.
T Consensus       132 ----------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          132 ----------------SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             ----------------HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             ----------------HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence                            44555555566666777777777777788888888887777766653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.81  E-value=1.8e-18  Score=132.24  Aligned_cols=154  Identities=13%  Similarity=0.060  Sum_probs=147.6

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++..|+ ...|..++.++...|++++|...++++
T Consensus        23 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  102 (186)
T 3as5_A           23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV  102 (186)
T ss_dssp             CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4788999999999999999999999999999999999999999999999998 789999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  159 (365)
                      +..+|+++.++..+|.++...|++++|+..++++++. .|.+    +.++..++.++.   ..|++++|...++++++..
T Consensus       103 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          103 AEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-RPNE----GKVHRAIAFSYE---QMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHH
T ss_pred             HhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-Cccc----hHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999 8888    999999999999   9999999999999999877


Q ss_pred             CCc
Q 036703          160 PKG  162 (365)
Q Consensus       160 p~~  162 (365)
                      |.+
T Consensus       175 ~~~  177 (186)
T 3as5_A          175 EGA  177 (186)
T ss_dssp             HCC
T ss_pred             CCc
Confidence            765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.81  E-value=2.5e-18  Score=134.11  Aligned_cols=131  Identities=15%  Similarity=0.126  Sum_probs=110.2

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHH----------------HHHHHHHhccHHHHHHHHHHHHH
Q 036703           19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLS----------------YIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~----------------~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      +.+.++..|..+...|++++|+..|+++++.+|+ ..+|..                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4667888899999999999999999999999998 678888                89999999999999999999999


Q ss_pred             hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch--hHHHHHHHHHHhc
Q 036703           82 CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE--TDRARCIYKFALD  157 (365)
Q Consensus        82 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~l~  157 (365)
                      .+|+++.++..+|.++...|++++|+..|+++++. .|++    +.+|..+|.++.   ..|+  ...+...|++++.
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~P~~----~~a~~~lg~~~~---~~~~~~~~~~~~~~~~~~~  152 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-EADN----LAANIFLGNYYY---LTAEQEKKKLETDYKKLSS  152 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHHHHHHHHHHHHHC---C
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC----HHHHHHHHHHHH---HHhHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999 8888    889999998886   5553  3455666666554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.79  E-value=3.9e-16  Score=127.89  Aligned_cols=230  Identities=10%  Similarity=0.043  Sum_probs=191.0

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc--cH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGN----------VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN--EV   69 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~--~~   69 (365)
                      ++|...+++++..+|++..+|...+.+....|.          +++++.+++.++..+|. ..+|...+.+....|  ++
T Consensus        47 ~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~  126 (331)
T 3dss_A           47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  126 (331)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence            479999999999999999999999999988775          68899999999999999 799999999998888  48


Q ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc-hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc------
Q 036703           70 QRARHIFERLVQCHPYNLSAWINFADFEMKMGE-VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC------  142 (365)
Q Consensus        70 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  142 (365)
                      +++..++.++++.+|.+..+|...+.+....|. ++++++.++++++. .|.+    ..+|...+.+..   ..      
T Consensus       127 ~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~p~N----~SAW~~R~~ll~---~l~~~~~~  198 (331)
T 3dss_A          127 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSN----YSSWHYRSCLLP---QLHPQPDS  198 (331)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CSCC----HHHHHHHHHHHH---HHSCCC--
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-CCCC----HHHHHHHHHHHH---Hhhhcccc
Confidence            999999999999999999999999999999998 59999999999999 9999    999999988877   55      


Q ss_pred             --------chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH-HcCCch--hhhHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 036703          143 --------KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK-QYGDRE--GIEDAIAGKMRLQYEDGVRKNPMNYDTWF  211 (365)
Q Consensus       143 --------~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~a~~~~~~~l~~~p~~~~~~~  211 (365)
                              +.++++++.+.+++...|.+.  ..|.-..-+.. ..|...  ......++.++..++++++..|++...+.
T Consensus       199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~--SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~  276 (331)
T 3dss_A          199 GPQGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL  276 (331)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence                    678999999999999999984  45543322222 222111  11123467899999999999999966655


Q ss_pred             HHHHHHH---HhCCHHHHHHHHHHHHhcCCCchh
Q 036703          212 DYIRLEE---RVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       212 ~~~~~~~---~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                      .++.+..   ..|..+++...+.+.++.+|...+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~  310 (331)
T 3dss_A          277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  310 (331)
T ss_dssp             HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhh
Confidence            5554432   357788999999999999998753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.79  E-value=2e-17  Score=130.77  Aligned_cols=157  Identities=11%  Similarity=0.033  Sum_probs=136.4

Q ss_pred             ChhhHHHHHHHHHHhCCCch---HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h---HHHHHHHHHHHH--------
Q 036703            1 FIDHGRNAWDRVVTLSPRVD---QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H---EGWLSYIKFKLR--------   65 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~~~--------   65 (365)
                      ++++|+..|++++..+|+++   .++..+|.++...|++++|+..|+++++.+|+ .   .++..++.++..        
T Consensus        19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~   98 (225)
T 2yhc_A           19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQG   98 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhh
Confidence            57899999999999988864   68999999999999999999999999999998 2   367777777664        


Q ss_pred             ----------hccHHHHHHHHHHHHHhCCcchHHH-----------------HHHHHHHHhhcchHHHHHHHHHHHhhhh
Q 036703           66 ----------YNEVQRARHIFERLVQCHPYNLSAW-----------------INFADFEMKMGEVDRARNVYECAVEIFL  118 (365)
Q Consensus        66 ----------~~~~~~A~~~~~~~l~~~p~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~a~~~~~  118 (365)
                                .|++++|+..|+++++.+|+++.++                 ..+|.++...|++++|+..|+++++. .
T Consensus        99 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~  177 (225)
T 2yhc_A           99 FFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD-Y  177 (225)
T ss_dssp             ---------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-S
T ss_pred             hhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-C
Confidence                      5789999999999999999887665                 56788899999999999999999999 9


Q ss_pred             cCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703          119 ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      |++ +..+.++..++.++.   ..|++++|+..++++....|.+
T Consensus       178 p~~-~~~~~a~~~l~~~~~---~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          178 PDT-QATRDALPLMENAYR---QMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             TTS-HHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHCCSCC
T ss_pred             cCC-CccHHHHHHHHHHHH---HcCCcHHHHHHHHHHHhhCCCc
Confidence            886 445678999999999   9999999999999988887764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.79  E-value=6.2e-17  Score=127.87  Aligned_cols=191  Identities=12%  Similarity=0.049  Sum_probs=141.3

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH---HHH
Q 036703           19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS---AWI   91 (365)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~   91 (365)
                      ++..++.+|..+...|++++|+..|+++++..|+    ..++..+|.++...|++++|+..|+++++.+|+++.   ++.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            3677899999999999999999999999999887    368999999999999999999999999999998765   678


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhH------
Q 036703           92 NFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAE------  165 (365)
Q Consensus        92 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------  165 (365)
                      .+|.++...|..            .         ...+..++..+.   ..|++++|+..|+++++..|.+...      
T Consensus        83 ~~g~~~~~~~~~------------~---------~~~~~~~~~~~~---~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~  138 (225)
T 2yhc_A           83 MRGLTNMALDDS------------A---------LQGFFGVDRSDR---DPQQARAAFSDFSKLVRGYPNSQYTTDATKR  138 (225)
T ss_dssp             HHHHHHHHHHC--------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH
T ss_pred             HHHHHHHhhhhh------------h---------hhhhhccchhhc---CcHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence            888887764310            0         111222233333   4555555555555555555544211      


Q ss_pred             ---------HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Q 036703          166 ---------DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY---DTWFDYIRLEERVGNQERVREVYERA  233 (365)
Q Consensus       166 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~  233 (365)
                               ......+.++...|+..        .|+..|+++++.+|+++   .++..++.++...|++++|+..++++
T Consensus       139 l~~~~~~~~~~~~~~a~~~~~~~~~~--------~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          139 LVFLKDRLAKYEYSVAEYYTERGAWV--------AVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHH--------HHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence                     11234455666777755        79999999999999986   67999999999999999999999999


Q ss_pred             HhcCCCch
Q 036703          234 IANVPPAE  241 (365)
Q Consensus       234 ~~~~p~~~  241 (365)
                      ....|.+.
T Consensus       211 ~~~~~~~~  218 (225)
T 2yhc_A          211 AANSSNTL  218 (225)
T ss_dssp             HHCCSCCC
T ss_pred             HhhCCCch
Confidence            99888864

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.79  E-value=3e-16  Score=147.03  Aligned_cols=123  Identities=10%  Similarity=0.087  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc
Q 036703          209 TWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM  288 (365)
Q Consensus       209 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~  288 (365)
                      .|..++.++...|+++.|++.++++..              ...|...+..+ ...|++..|+..... +..        
T Consensus      1223 ny~rLA~tLvkLge~q~AIEaarKA~n--------------~~aWkev~~ac-ve~~Ef~LA~~cgl~-Iiv-------- 1278 (1630)
T 1xi4_A         1223 NFGRLASTLVHLGEYQAAVDGARKANS--------------TRTWKEVCFAC-VDGKEFRLAQMCGLH-IVV-------- 1278 (1630)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhCC--------------HHHHHHHHHHH-hhhhHHHHHHHHHHh-hhc--------
Confidence            455555555555555555555555411              11444444333 344555555544432 221        


Q ss_pred             hhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhc--cchhHHHHHHHHHhcCcC
Q 036703          289 EERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSL--DETERARAIFELAIAQPI  356 (365)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--g~~~~A~~~~~~a~~~~~  356 (365)
                       .++.+..++..|...|.+++|+.++++++.++|.+..+|..++.++.+.  ++..++.+.|...++..|
T Consensus      1279 -~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A         1279 -HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence             2445557788889999999999999999999999999998888877754  567788888887776544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.78  E-value=4.5e-18  Score=121.02  Aligned_cols=120  Identities=17%  Similarity=0.140  Sum_probs=112.6

Q ss_pred             HHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH
Q 036703           11 RVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA   89 (365)
Q Consensus        11 ~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   89 (365)
                      ++..++|+....+...|..+.+.|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++.+|+++.+
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            455689999999999999999999999999999999999999 8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 036703           90 WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF  135 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  135 (365)
                      |..+|.++...|++++|++.|+++++. .|++    ..++..++.+
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l-~P~~----~~a~~~l~~~  124 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQV-DPSN----EEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHH-CcCC----HHHHHHHHHh
Confidence            999999999999999999999999999 9998    8888877765

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.78  E-value=2.1e-17  Score=135.23  Aligned_cols=159  Identities=13%  Similarity=0.090  Sum_probs=130.8

Q ss_pred             hccHHHHHHHHHHHHHh--------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhh-----cCChhhHHHHHHHH
Q 036703           66 YNEVQRARHIFERLVQC--------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFL-----ADDHDEAEQLFVAF  132 (365)
Q Consensus        66 ~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~  132 (365)
                      .|++++|+..|+++++.        +|....++..+|.++...|++++|+..|+++++. .     +++ +....++..+
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~-~~~~~~~~~l   91 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAI-REKTLGKDH-PAVAATLNNL   91 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCTTC-HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHHcCCcc-hHHHHHHHHH
Confidence            45555666666666552        3566888999999999999999999999999987 5     332 5568899999


Q ss_pred             HHHHHhccccchhHHHHHHHHHHhccC-----CC-chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc----
Q 036703          133 AKFEEMGCNCKETDRARCIYKFALDRI-----PK-GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK----  202 (365)
Q Consensus       133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~----  202 (365)
                      |.++.   ..|++++|+..|++++...     +. ......+..++.++...|+.+        +|...|++++..    
T Consensus        92 ~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           92 AVLYG---KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE--------EVEYYYRRALEIYATR  160 (283)
T ss_dssp             HHHHH---TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH--------HHHHHHHHHHHHHHHH
T ss_pred             HHHHH---HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHh
Confidence            99999   9999999999999999873     22 224678888899998999866        699999999987    


Q ss_pred             ----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 036703          203 ----NPMNYDTWFDYIRLEERVGNQERVREVYERAIANV  237 (365)
Q Consensus       203 ----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  237 (365)
                          .|....++..+|.++...|++++|...|+++++..
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence                66667899999999999999999999999999863

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.77  E-value=7.3e-18  Score=127.85  Aligned_cols=169  Identities=11%  Similarity=0.061  Sum_probs=143.9

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA   94 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~   94 (365)
                      +|.....+...|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|++++...| ++..+...+
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            4566677899999999999999999999999999999 78999999999999999999999999999999 877766666


Q ss_pred             HHHH-hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHH
Q 036703           95 DFEM-KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLA  173 (365)
Q Consensus        95 ~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  173 (365)
                      .+.. ..+....|+..++++++. .|++    +.++..+|.++.   ..|++++|+..|+++++..|.......+..++.
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~-~P~~----~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~  152 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAA-NPDN----FELACELAVQYN---QVGRDEEALELLWNILKVNLGAQDGEVKKTFMD  152 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred             HHHHHhhcccchHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence            5533 334455689999999999 9988    999999999999   999999999999999999987544568888889


Q ss_pred             HHHHcCCchhhhHHHHHHHHHHHHHHHH
Q 036703          174 FEKQYGDREGIEDAIAGKMRLQYEDGVR  201 (365)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~a~~~~~~~l~  201 (365)
                      ++...|+.+        .|...|++++.
T Consensus       153 ~~~~~g~~~--------~A~~~y~~al~  172 (176)
T 2r5s_A          153 ILSALGQGN--------AIASKYRRQLY  172 (176)
T ss_dssp             HHHHHCSSC--------HHHHHHHHHHH
T ss_pred             HHHHhCCCC--------cHHHHHHHHHH
Confidence            888889876        58888888774

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.77  E-value=5.6e-17  Score=132.94  Aligned_cols=172  Identities=10%  Similarity=-0.020  Sum_probs=158.0

Q ss_pred             HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHH
Q 036703           14 TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN   92 (365)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~   92 (365)
                      ...|.+...+..+|..+...|++++|+..|+++++.+|+ ..++..++.++...|++++|+..|++++..+|+.......
T Consensus       111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            446999999999999999999999999999999999999 7899999999999999999999999999999977777777


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHH
Q 036703           93 FADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL  172 (365)
Q Consensus        93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  172 (365)
                      .+..+...++.+.|+..|++++.. .|++    ..+++.+|.++.   ..|++++|+..|+++++..|.......+..++
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~-~P~~----~~~~~~la~~l~---~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~  262 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAE-NPED----AALATQLALQLH---QVGRNEEALELLFGHLRXDLTAADGQTRXTFQ  262 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred             HHHHHHhhcccCccHHHHHHHHhc-CCcc----HHHHHHHHHHHH---HcccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence            777788899999999999999999 9998    999999999999   99999999999999999999876678899999


Q ss_pred             HHHHHcCCchhhhHHHHHHHHHHHHHHHH
Q 036703          173 AFEKQYGDREGIEDAIAGKMRLQYEDGVR  201 (365)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~  201 (365)
                      .++...|+.+        .|...|++++.
T Consensus       263 ~~~~~~g~~~--------~a~~~~r~al~  283 (287)
T 3qou_A          263 EILAALGTGD--------ALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHCTTC--------HHHHHHHHHHH
T ss_pred             HHHHHcCCCC--------cHHHHHHHHHH
Confidence            9999999866        57788888764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.77  E-value=1.4e-17  Score=150.14  Aligned_cols=155  Identities=11%  Similarity=0.096  Sum_probs=133.9

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++
T Consensus         4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   83 (568)
T 2vsy_A            4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQA   83 (568)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc---chhHHHHHHHHHHh
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC---KETDRARCIYKFAL  156 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l  156 (365)
                      ++.+|++..++..+|.++...|++++|++.|+++++. .|.+    ..++..++.++.   ..   |++++|...|++++
T Consensus        84 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~l~~~~~---~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           84 SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-LPEE----PYITAQLLNWRR---RLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCCTTHHHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HhhccccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 9988    999999999999   99   99999999999999


Q ss_pred             ccCCCch
Q 036703          157 DRIPKGR  163 (365)
Q Consensus       157 ~~~p~~~  163 (365)
                      +..|...
T Consensus       156 ~~~p~~~  162 (568)
T 2vsy_A          156 AQGVGAV  162 (568)
T ss_dssp             HHTCCCS
T ss_pred             hcCCccc
Confidence            9988763

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.76  E-value=3.1e-17  Score=124.33  Aligned_cols=171  Identities=14%  Similarity=0.054  Sum_probs=128.8

Q ss_pred             CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703           83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus        83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      +|.....++..|..+...|++++|+..|+++++. .|++    +.++..+|.++.   ..|++++|+..|++++...| +
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~----~~a~~~la~~~~---~~g~~~~A~~~~~~a~~~~p-~   72 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDE-LQSR----GDVKLAKADCLL---ETKQFELAQELLATIPLEYQ-D   72 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTS----HHHHHHHHHHHH---HTTCHHHHHHHHTTCCGGGC-C
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCc----HHHHHHHHHHHH---HCCCHHHHHHHHHHhhhccC-C
Confidence            4545566777888888888888888888888888 7777    888888888888   88888888888888888777 4


Q ss_pred             hhHHHHHHHHHHHH-HcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703          163 RAEDLYRKFLAFEK-QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE  241 (365)
Q Consensus       163 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  241 (365)
                      .  ..+...+.+.. ..+...        .|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++..|...
T Consensus        73 ~--~~~~~~~~~~~~~~~~~~--------~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  142 (176)
T 2r5s_A           73 N--SYKSLIAKLELHQQAAES--------PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ  142 (176)
T ss_dssp             H--HHHHHHHHHHHHHHHTSC--------HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred             h--HHHHHHHHHHHHhhcccc--------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence            2  22222222211 111111        368899999999999999999999999999999999999999999998753


Q ss_pred             hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703          242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF  280 (365)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  280 (365)
                      .       ...+..++.++ ...|+.++|...|++++..
T Consensus       143 ~-------~~a~~~l~~~~-~~~g~~~~A~~~y~~al~~  173 (176)
T 2r5s_A          143 D-------GEVKKTFMDIL-SALGQGNAIASKYRRQLYS  173 (176)
T ss_dssp             T-------THHHHHHHHHH-HHHCSSCHHHHHHHHHHHH
T ss_pred             h-------HHHHHHHHHHH-HHhCCCCcHHHHHHHHHHH
Confidence            2       12677778777 5889999999999988763

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.76  E-value=3.9e-18  Score=124.76  Aligned_cols=114  Identities=9%  Similarity=0.083  Sum_probs=109.1

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703            7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY   85 (365)
Q Consensus         7 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~   85 (365)
                      ..|++++..+|+++.+|+.+|..+...|++++|+..|++++..+|+ ...|..+|.++...|++++|+..|+++++.+|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            3466778889999999999999999999999999999999999999 899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      ++.+|..+|.++...|++++|+..|+++++. .|++
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l-~~~~  137 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQH-SNDE  137 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCH
Confidence            9999999999999999999999999999999 8875

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.75  E-value=1.1e-15  Score=125.73  Aligned_cols=228  Identities=7%  Similarity=-0.009  Sum_probs=186.2

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh-c-cHHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG-NVAGARQIFERWMHWMPD-HEGWLSYIKFKLRY-N-EVQRARHIFER   78 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~-~-~~~~A~~~~~~   78 (365)
                      ++|..++++++..+|++..+|...+.+....| .+++++..+++++..+|. ..+|...+.+.... + ++++++.++.+
T Consensus        71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k  150 (349)
T 3q7a_A           71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG  150 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            57999999999999999999999999999999 599999999999999999 79999999888887 7 89999999999


Q ss_pred             HHHhCCcchHHHHHHHHHHHhhcchH--------HHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch------
Q 036703           79 LVQCHPYNLSAWINFADFEMKMGEVD--------RARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE------  144 (365)
Q Consensus        79 ~l~~~p~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  144 (365)
                      +++.+|.+..+|...+-+....|.++        ++++.++++++. .|.+    ..+|...+.+..   ..+.      
T Consensus       151 ~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-dp~N----~SAW~~R~~lL~---~l~~~~~~~~  222 (349)
T 3q7a_A          151 SLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-DGRN----NSAWGWRWYLRV---SRPGAETSSR  222 (349)
T ss_dssp             HTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHT---TSTTCCCCHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---hccccccchH
Confidence            99999999999999999999998888        999999999999 9998    999999999998   7775      


Q ss_pred             -hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchh------------hhHHHHHHHHHHHHHHHHc------CCC
Q 036703          145 -TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREG------------IEDAIAGKMRLQYEDGVRK------NPM  205 (365)
Q Consensus       145 -~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~l~~------~p~  205 (365)
                       ++++++.+++++...|.+  ...|.-...+....|....            ..+.............+..      .+.
T Consensus       223 ~~~eELe~~~~aI~~~P~n--~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (349)
T 3q7a_A          223 SLQDELIYILKSIHLIPHN--VSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP  300 (349)
T ss_dssp             HHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred             HHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence             789999999999999998  4567666556656554310            0000000111111111111      256


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-cCCCc
Q 036703          206 NYDTWFDYIRLEERVGNQERVREVYERAIA-NVPPA  240 (365)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~p~~  240 (365)
                      ++.++..+++++...|+.++|.++++...+ .+|-.
T Consensus       301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir  336 (349)
T 3q7a_A          301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMR  336 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGG
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHH
Confidence            788999999999999999999999999874 46654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.74  E-value=2.8e-16  Score=128.78  Aligned_cols=170  Identities=11%  Similarity=0.008  Sum_probs=150.3

Q ss_pred             hhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH
Q 036703           48 HWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE  126 (365)
Q Consensus        48 ~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  126 (365)
                      ...|+ ...+..++..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.. .|+.    .
T Consensus       111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-~p~~----~  185 (287)
T 3qou_A          111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-DQDT----R  185 (287)
T ss_dssp             HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-GCSH----H
T ss_pred             HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-hcch----H
Confidence            34477 6788899999999999999999999999999999999999999999999999999999999998 8864    5


Q ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC
Q 036703          127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN  206 (365)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~  206 (365)
                      ..+...+..+.   ..++.++|+..|++++...|++  ...+..++..+...|+.+        .|+..|+++++.+|++
T Consensus       186 ~~~~~~~~~l~---~~~~~~~a~~~l~~al~~~P~~--~~~~~~la~~l~~~g~~~--------~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          186 YQGLVAQIELL---XQAADTPEIQQLQQQVAENPED--AALATQLALQLHQVGRNE--------EALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHHHHHH---HHHTSCHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTG
T ss_pred             HHHHHHHHHHH---hhcccCccHHHHHHHHhcCCcc--HHHHHHHHHHHHHcccHH--------HHHHHHHHHHhccccc
Confidence            55566666677   7888899999999999999987  678999999999999866        6999999999999998


Q ss_pred             --HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 036703          207 --YDTWFDYIRLEERVGNQERVREVYERAIA  235 (365)
Q Consensus       207 --~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  235 (365)
                        ..++..++.++...|+.++|...|++++.
T Consensus       253 ~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          253 ADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence              88999999999999999999999999875

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.74  E-value=1.1e-17  Score=140.75  Aligned_cols=281  Identities=9%  Similarity=0.004  Sum_probs=150.3

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      ++++|+..|.++     .++..|...+..+...|++++|+.+++.+.+..+++.+...++.++.+.|+++++.++++   
T Consensus        47 ~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---  118 (449)
T 1b89_A           47 MVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN---  118 (449)
T ss_dssp             -------------------------------------------------------------------CHHHHTTTTT---
T ss_pred             CHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---
Confidence            356788888663     346689999999999999999999999999876667778889999999999999998885   


Q ss_pred             HhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           81 QCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        81 ~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                        .| +...|..+|..+...|.+++|+.+|.++             ..|..++.++.   +.|++++|.+.++++.    
T Consensus       119 --~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------------~n~~~LA~~L~---~Lg~yq~AVea~~KA~----  175 (449)
T 1b89_A          119 --GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLV---HLGEYQAAVDGARKAN----  175 (449)
T ss_dssp             --CC-----------------CTTTHHHHHHHT-------------TCHHHHHHHHH---TTTCHHHHHHHHHHHT----
T ss_pred             --CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHh-------------hhHHHHHHHHH---HhccHHHHHHHHHHcC----
Confidence              36 5579999999999999999999999964             25788899999   9999999999999992    


Q ss_pred             CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          161 KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                         .+..|...+..+...|+++        .|..+... +..+|   +-...++.+|.+.|.+++|+.+++.++...+.+
T Consensus       176 ---~~~~Wk~v~~aCv~~~ef~--------lA~~~~l~-L~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah  240 (449)
T 1b89_A          176 ---STRTWKEVCFACVDGKEFR--------LAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAALGLERAH  240 (449)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHH--------HHHHTTTT-TTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred             ---CchhHHHHHHHHHHcCcHH--------HHHHHHHH-HHhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence               2678999999898999876        45444443 33444   445568889999999999999999999999877


Q ss_pred             hhhhHHHHhHHHHHHHHHHHh-hccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHh
Q 036703          241 EEKRYWQRYIYLWINYALYKE-VDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLE  319 (365)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  319 (365)
                      ..         +|..++.++. ...++..+.++.|...+.+.+....+ .+..+|..++-+|...++++.|....-....
T Consensus       241 ~~---------~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~-~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~  310 (449)
T 1b89_A          241 MG---------MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA-EQAHLWAELVFLYDKYEEYDNAIITMMNHPT  310 (449)
T ss_dssp             HH---------HHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHH-HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred             HH---------HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHhCCh
Confidence            43         6666666652 13345566666666666664200000 1155678999999999999999876655433


Q ss_pred             h------------CcchHHHHHHHHHHHhh
Q 036703          320 W------------SPENCYAWSKYTELEKS  337 (365)
Q Consensus       320 ~------------~p~~~~~~~~~~~~~~~  337 (365)
                      .            .+.|.+++...+.++..
T Consensus       311 ~a~~~~~f~~~~~kv~n~elyYkai~fyl~  340 (449)
T 1b89_A          311 DAWKEGQFKDIITKVANVELYYRAIQFYLE  340 (449)
T ss_dssp             TTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHhchhHHHHHHHHHHHHHh
Confidence            3            45678888888888873

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.74  E-value=4.6e-15  Score=122.07  Aligned_cols=244  Identities=12%  Similarity=0.043  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc-c-hhH
Q 036703           70 QRARHIFERLVQCHPYNLSAWINFADFEMKMG-EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC-K-ETD  146 (365)
Q Consensus        70 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~  146 (365)
                      ++|+.++.+++..+|++..+|...+.++...| .+++++.+++.++.. .|++    ..+|...+.+..   .. + +++
T Consensus        71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~-nPKn----y~aW~hR~wlL~---~l~~~~~~  142 (349)
T 3q7a_A           71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ-NLKS----YQVWHHRLLLLD---RISPQDPV  142 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT-TCCC----HHHHHHHHHHHH---HHCCSCCH
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHH---HhcCCChH
Confidence            34444444444444444444444444444444 244444444444444 4444    444444444444   33 3 444


Q ss_pred             HHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----
Q 036703          147 RARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGN----  222 (365)
Q Consensus       147 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~----  222 (365)
                      +++..+.++++.+|.+  ...|.--.-+....|..+.........++..++++++.+|.|..+|...+.+....+.    
T Consensus       143 ~EL~~~~k~L~~dpkN--y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKN--YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHHTSSCTTC--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccc
Confidence            4444444444444443  2223222222222111110001123368889999999999999999999999888876    


Q ss_pred             ---HHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhH-----------------HHHHHHHHHhccc
Q 036703          223 ---QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER-----------------TRDVYRTLFIFYF  282 (365)
Q Consensus       223 ---~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------a~~~~~~a~~~~~  282 (365)
                         ++++.+.+.+++..+|.+..         +|..+..++. ..|....                 --.+-+.++....
T Consensus       221 ~~~~~eELe~~~~aI~~~P~n~S---------aW~Ylr~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHLIPHNVS---------AWNYLRGFLK-HFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS  290 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHH-HTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred             hHHHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHH-hcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence               78999999999999999964         6766555542 4443200                 0112222222211


Q ss_pred             c----CCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHH-hhCcchHHHHHHHHHH
Q 036703          283 S----FSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYL-EWSPENCYAWSKYTEL  334 (365)
Q Consensus       283 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~  334 (365)
                      .    ...+ +.+-.+..+++++...|+.++|.++++.+. +.+|-....|...+..
T Consensus       291 ~~~~~~~~~-~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~  346 (349)
T 3q7a_A          291 DPLPEDTPL-PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE  346 (349)
T ss_dssp             -CCCSSCCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             cccccccCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            1    1111 336677778888888888888999998886 5688777777766543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.73  E-value=3.8e-14  Score=116.18  Aligned_cols=200  Identities=10%  Similarity=0.053  Sum_probs=162.5

Q ss_pred             HhcCChh-HHHHHHHHHHhhCCC-hHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           31 ENLGNVA-GARQIFERWMHWMPD-HEGWLSYIKFKLRYNE----------VQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        31 ~~~g~~~-~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      .+.|.++ +|+..+.+++..+|+ ..+|.....+....+.          ++++..++.+++..+|.+..+|...+.++.
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~  119 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  119 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            4566665 799999999999999 7899998888877665          689999999999999999999999999999


Q ss_pred             hhcc--hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch-hHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 036703           99 KMGE--VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE-TDRARCIYKFALDRIPKGRAEDLYRKFLAFE  175 (365)
Q Consensus        99 ~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  175 (365)
                      ..|.  +++++.++.++++. .|.+    ..+|...+.+..   ..|. ++++++.+.+++..+|.+  ...|.....+.
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~-dprN----y~AW~~R~~vl~---~l~~~~~eel~~~~~~I~~~p~N--~SAW~~R~~ll  189 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEA-DERN----FHCWDYRRFVAA---QAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLL  189 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHH
T ss_pred             ccCcccHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Confidence            9884  89999999999999 9998    999999999998   8888 599999999999999998  45666655555


Q ss_pred             HHcCCch------hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHhcCC
Q 036703          176 KQYGDRE------GIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV-----------GNQERVREVYERAIANVP  238 (365)
Q Consensus       176 ~~~~~~~------~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~~~~p  238 (365)
                      ...+...      ......++.++..+.+++..+|++..+|+.+.-++...           +..+++++.+.++++..|
T Consensus       190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p  269 (331)
T 3dss_A          190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP  269 (331)
T ss_dssp             HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence            4442111      01112456899999999999999999998665554433           346677777888887777


Q ss_pred             Cc
Q 036703          239 PA  240 (365)
Q Consensus       239 ~~  240 (365)
                      ++
T Consensus       270 d~  271 (331)
T 3dss_A          270 EN  271 (331)
T ss_dssp             TC
T ss_pred             cc
Confidence            76

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.73  E-value=1e-16  Score=117.52  Aligned_cols=115  Identities=12%  Similarity=0.027  Sum_probs=111.0

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 036703            6 RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP   84 (365)
Q Consensus         6 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p   84 (365)
                      -..|++++..+|++..++..+|..+...|++++|+..|++++..+|+ ...|..++.++...|++++|+..|++++..+|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            35689999999999999999999999999999999999999999998 89999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           85 YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      +++.++..+|.++...|++++|+..|+++++. .|.+
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~  122 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQEL-IANX  122 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTC
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCC
Confidence            99999999999999999999999999999999 8876

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.73  E-value=1.5e-17  Score=121.59  Aligned_cols=114  Identities=13%  Similarity=0.129  Sum_probs=108.6

Q ss_pred             HHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhc
Q 036703           41 QIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA  119 (365)
Q Consensus        41 ~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  119 (365)
                      ..+++++.++|+ ...|..+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++. .|
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-~P  101 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-GK  101 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CC
Confidence            456777888898 7899999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             CChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703          120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      ++    +.+|+.+|.++.   ..|++++|+..|+++++..|++
T Consensus       102 ~~----~~~~~~lg~~~~---~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          102 ND----YTPVFHTGQCQL---RLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             SC----CHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCCH
T ss_pred             CC----cHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCH
Confidence            98    999999999999   9999999999999999999875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.72  E-value=6.4e-16  Score=111.34  Aligned_cols=133  Identities=19%  Similarity=0.308  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK   99 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~   99 (365)
                      .+|..+|.++...|++++|+..|+++++..|. ...|..++.++...|++++|...+++++...|.++.++..++.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            57889999999999999999999999999998 78899999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703          100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus       100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                      .|++++|+..++++++. .|.+    ..++..++.++.   ..|++++|...|++++...|.
T Consensus        82 ~~~~~~A~~~~~~~~~~-~~~~----~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALEL-DPRS----AEAWYNLGNAYY---KQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSTT
T ss_pred             hcCHHHHHHHHHHHHHh-CCCC----hHHHHHHHHHHH---HHccHHHHHHHHHHHHccCCC
Confidence            99999999999999999 8887    889999999999   999999999999999987775

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.72  E-value=1.5e-16  Score=113.10  Aligned_cols=118  Identities=17%  Similarity=0.103  Sum_probs=107.2

Q ss_pred             HHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChh
Q 036703           45 RWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHD  123 (365)
Q Consensus        45 ~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  123 (365)
                      |+..++|+ ...+...|..+.+.|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++. .|.+  
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~--   80 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-DSKF--   80 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC--
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-hhhh--
Confidence            45567888 7889999999999999999999999999999999999999999999999999999999999999 9988  


Q ss_pred             hHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHH
Q 036703          124 EAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL  172 (365)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  172 (365)
                        ..+|..+|.++.   ..|++++|+..|+++++..|++  ..++..+.
T Consensus        81 --~~a~~~lg~~~~---~~~~~~~A~~~~~~al~l~P~~--~~a~~~l~  122 (126)
T 4gco_A           81 --IKGYIRKAACLV---AMREWSKAQRAYEDALQVDPSN--EEAREGVR  122 (126)
T ss_dssp             --HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred             --hHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHCcCC--HHHHHHHH
Confidence              999999999999   9999999999999999999987  34444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.72  E-value=8.9e-17  Score=117.18  Aligned_cols=114  Identities=12%  Similarity=0.040  Sum_probs=107.3

Q ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703            7 NAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY   85 (365)
Q Consensus         7 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~   85 (365)
                      ..|++++..+|++...+..+|..+...|++++|+..|++++..+|+ ...|..++.++...|++++|+..|++++..+|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            5788899999999999999999999999999999999999999998 899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      ++.++..+|.++...|++++|+..|+++++. .|.+
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~  119 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARAL-AAAQ  119 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHTC
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Confidence            9999999999999999999999999999999 8876

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.72  E-value=4.1e-17  Score=136.75  Aligned_cols=149  Identities=9%  Similarity=0.176  Sum_probs=139.1

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh----------------HHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH----------------EGWLSYIKFKLR   65 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~~~~~~~   65 (365)
                      +++|+..|++++...|++..+|..+|.++...|++++|+..|+++++..|+.                .+|..++.++..
T Consensus       129 ~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~  208 (336)
T 1p5q_A          129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK  208 (336)
T ss_dssp             EECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888899999999999999999999999999999999999999984                799999999999


Q ss_pred             hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchh
Q 036703           66 YNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKET  145 (365)
Q Consensus        66 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (365)
                      .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++. .|.+    ..++..++.++.   ..|++
T Consensus       209 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~----~~a~~~l~~~~~---~~~~~  280 (336)
T 1p5q_A          209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNN----KAAKTQLAVCQQ---RIRRQ  280 (336)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSC----HHHHHHHHHHHH---HHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCC----HHHHHHHHHHHH---HHHHH
Confidence            999999999999999999999999999999999999999999999999999 9998    899999999999   99999


Q ss_pred             HHH-HHHHHHHhcc
Q 036703          146 DRA-RCIYKFALDR  158 (365)
Q Consensus       146 ~~A-~~~~~~~l~~  158 (365)
                      ++| ...|++++..
T Consensus       281 ~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          281 LAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            988 5577777653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.72  E-value=2e-16  Score=142.65  Aligned_cols=167  Identities=11%  Similarity=0.127  Sum_probs=135.4

Q ss_pred             cCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHH
Q 036703           33 LGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYE  111 (365)
Q Consensus        33 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~  111 (365)
                      .|++++|+..|+++++.+|+ ...|..++.++...|++++|...|+++++.+|++..++..+|.++...|++++|+..|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999 78999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHH
Q 036703          112 CAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGK  191 (365)
Q Consensus       112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (365)
                      ++++. .|.+    ..++..+|.++.   ..|++++|+..|+++++..|.+  ...+..++..+...+++..     .++
T Consensus        82 ~al~~-~p~~----~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~g~-----~~~  146 (568)
T 2vsy_A           82 QASDA-APEH----PGIALWLGHALE---DAGQAEAAAAAYTRAHQLLPEE--PYITAQLLNWRRRLCDWRA-----LDV  146 (568)
T ss_dssp             HHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCCTT-----HHH
T ss_pred             HHHhc-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhhcccc-----HHH
Confidence            99999 9988    999999999999   9999999999999999999986  5788888888888832222     337


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHH
Q 036703          192 MRLQYEDGVRKNPMNYDTWFDYI  214 (365)
Q Consensus       192 a~~~~~~~l~~~p~~~~~~~~~~  214 (365)
                      |...|+++++.+|.+...+..++
T Consensus       147 A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          147 LSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHhcCCcccChHHHhC
Confidence            99999999999999988777666

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.71  E-value=9.6e-16  Score=127.00  Aligned_cols=205  Identities=10%  Similarity=0.068  Sum_probs=163.0

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLV   80 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l   80 (365)
                      ++++|..+++++.+..|..         ++...++++.|...|.++             +.++...|++++|...|.+++
T Consensus         6 ~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al   63 (307)
T 2ifu_A            6 KISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQAKDAYLQEA   63 (307)
T ss_dssp             HHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHH
Confidence            3678888888888876652         111147788888888776             567778899999999999999


Q ss_pred             HhCCcc------hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHH
Q 036703           81 QCHPYN------LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIY  152 (365)
Q Consensus        81 ~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  152 (365)
                      ...+..      ..++..+|.++...|++++|+..|+++++. .+..  ......++..+|.++.   . |++++|+..|
T Consensus        64 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~~~~g~~~~~a~~~~~lg~~~~---~-g~~~~A~~~~  138 (307)
T 2ifu_A           64 EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM-YVENGTPDTAAMALDRAGKLME---P-LDLSKAVHLY  138 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HHTTTCHHHHHHHHHHHHHHHT---T-TCHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHH---c-CCHHHHHHHH
Confidence            876532      557889999999999999999999999988 6532  1233578889999999   8 9999999999


Q ss_pred             HHHhccCCCch----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCC
Q 036703          153 KFALDRIPKGR----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN------YDTWFDYIRLEERVGN  222 (365)
Q Consensus       153 ~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~------~~~~~~~~~~~~~~~~  222 (365)
                      ++++...|...    ....+..++.++...|+++        +|+..|++++...|.+      ...+..++.++...|+
T Consensus       139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~  210 (307)
T 2ifu_A          139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFD--------EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD  210 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC
Confidence            99998765431    2467788888888999866        6999999999876544      2477888889999999


Q ss_pred             HHHHHHHHHHHHhcCCCch
Q 036703          223 QERVREVYERAIANVPPAE  241 (365)
Q Consensus       223 ~~~A~~~~~~~~~~~p~~~  241 (365)
                      +++|+..|++++ ..|...
T Consensus       211 ~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          211 YVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHHh-CCCCCC
Confidence            999999999999 888654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.70  E-value=7.7e-16  Score=127.59  Aligned_cols=239  Identities=11%  Similarity=0.037  Sum_probs=170.1

Q ss_pred             hcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHH
Q 036703           32 NLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYE  111 (365)
Q Consensus        32 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~  111 (365)
                      ..|++++|..+++++.+..+..        ++...++++.|...|.++              +.++...|++++|...|.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~~--------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~   60 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKTS--------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYL   60 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCC--------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHcccc--------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHH
Confidence            4577888999999888766641        011147888888888876              567888999999999999


Q ss_pred             HHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc----hhHHHHHHHHHHHHHcCCchhhh
Q 036703          112 CAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG----RAEDLYRKFLAFEKQYGDREGIE  185 (365)
Q Consensus       112 ~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~  185 (365)
                      ++++. .+..  .......+..++.++.   ..|++++|+..|++++...+..    .....+..++.++.. |+++   
T Consensus        61 ~al~~-~~~~~~~~~~a~~~~~lg~~~~---~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~---  132 (307)
T 2ifu_A           61 QEAEA-HANNRSLFHAAKAFEQAGMMLK---DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLS---  132 (307)
T ss_dssp             HHHHH-HHHTTCHHHHHHHHHHHHHHHH---HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHH---
T ss_pred             HHHHH-HHHcCCHHHHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHH---
Confidence            99998 6532  2234668889999999   9999999999999999864321    124566677777766 7754   


Q ss_pred             HHHHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHH
Q 036703          186 DAIAGKMRLQYEDGVRKNPMN------YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALY  259 (365)
Q Consensus       186 ~~~~~~a~~~~~~~l~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  259 (365)
                           +|+..|++++...|..      ..++..+|.++...|++++|+..|++++...|.+....   .....++..+.+
T Consensus       133 -----~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~g~~  204 (307)
T 2ifu_A          133 -----KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP---TCYKKCIAQVLV  204 (307)
T ss_dssp             -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh---HHHHHHHHHHHH
Confidence                 6888999988876643      46788889999999999999999999988755432100   112356666666


Q ss_pred             HhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHH
Q 036703          260 KEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRK  312 (365)
Q Consensus       260 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  312 (365)
                      + ...|++++|+..|++++ ..|..... ........++..+ ..|+.+.+..
T Consensus       205 ~-~~~g~~~~A~~~~~~al-~~p~~~~~-~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          205 Q-LHRADYVAAQKCVRESY-SIPGFSGS-EDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             H-HHTTCHHHHHHHHHHHT-TSTTSTTS-HHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             H-HHcCCHHHHHHHHHHHh-CCCCCCCC-HHHHHHHHHHHHH-HhcCHHHHHH
Confidence            5 57799999999999999 87655332 1233444445444 4566544433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.68  E-value=3.1e-16  Score=114.93  Aligned_cols=118  Identities=14%  Similarity=0.112  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           38 GARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        38 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      .+...|++++..+|+ ...+..++..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            344678999999998 7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                       .|++    +.++..+|.++.   ..|++++|+..|+++++..|.+.
T Consensus        85 -~p~~----~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           85 -DIXE----PRFPFHAAECLL---QXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             -STTC----THHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             -CCCC----chHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCcCCC
Confidence             9988    999999999999   99999999999999999888754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.68  E-value=4.1e-16  Score=127.32  Aligned_cols=196  Identities=9%  Similarity=0.021  Sum_probs=151.7

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703           17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD   95 (365)
Q Consensus        17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~   95 (365)
                      |.+...+..+|..+...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            667889999999999999999999999999999998 8899999999999999999999999999999999999999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhhcCChhh-HHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703           96 FEMKMGEVDRARNVYECAVEIFLADDHDE-AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF  174 (365)
Q Consensus        96 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  174 (365)
                      ++...|++++|+..|+++++. .|++... ...++..+.           ..++...........|..  ..+...+..+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~--~~i~~~l~~l  146 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSL-AKEQRLNFGDDIPSALR-----------IAKKKRWNSIEERRIHQE--SELHSYLTRL  146 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-HHHTTCCCCSHHHHHHH-----------HHHHHHHHHHHHTCCCCC--CHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhh--HHHHHHHHHH
Confidence            999999999999999999999 7754000 012222221           111122222222334443  2344444443


Q ss_pred             HHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhc
Q 036703          175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV-GNQERVREVYERAIAN  236 (365)
Q Consensus       175 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~  236 (365)
                      .  .|+        .++|+..++++++.+|++..+...+..++... +.+++|..+|.++.+.
T Consensus       147 ~--~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          147 I--AAE--------RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             H--HHH--------HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             H--HHH--------HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            3  232        33688999999999999988888888776655 7789999999998875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.68  E-value=2.5e-16  Score=125.43  Aligned_cols=199  Identities=9%  Similarity=-0.132  Sum_probs=170.1

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHH-------HHHHHhcCChhHHHHHHHHHHhhCCC---------------------
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNY-------IRMEENLGNVAGARQIFERWMHWMPD---------------------   52 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~-------~~~~~~~g~~~~A~~~~~~al~~~p~---------------------   52 (365)
                      +...|+..|.+++..+|+.+++|.++       +.++...+...+++..+.+.+.+.|.                     
T Consensus        21 d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~  100 (282)
T 4f3v_A           21 SEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTS  100 (282)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSS
T ss_pred             CHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCC
Confidence            46789999999999999999999999       89999999999999999999997775                     


Q ss_pred             -hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHH
Q 036703           53 -HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVA  131 (365)
Q Consensus        53 -~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  131 (365)
                       ..+++.++.++...|++++|...|..++...|++. ..+.++.++.+.+++++|+..|+.+... . .+ .....+++.
T Consensus       101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~-~~~~~a~~~  176 (282)
T 4f3v_A          101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DK-FLAGAAGVA  176 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CH-HHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-Cc-ccHHHHHHH
Confidence             13456789999999999999999999999999888 9999999999999999999999977665 2 11 112458999


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHhccC--CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703          132 FAKFEEMGCNCKETDRARCIYKFALDRI--PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT  209 (365)
Q Consensus       132 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~  209 (365)
                      +|..+.   ..|++++|+..|++++...  |.. ....+...+......|+.+        +|+..|++++..+|+ ..+
T Consensus       177 LG~al~---~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~d--------eA~~~l~~a~a~~P~-~~~  243 (282)
T 4f3v_A          177 HGVAAA---NLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNES--------AAVALLEWLQTTHPE-PKV  243 (282)
T ss_dssp             HHHHHH---HTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHSCC-HHH
T ss_pred             HHHHHH---HCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCc-HHH
Confidence            999999   9999999999999998643  331 3567888888888999866        799999999999999 888


Q ss_pred             HHHHHHH
Q 036703          210 WFDYIRL  216 (365)
Q Consensus       210 ~~~~~~~  216 (365)
                      +..+...
T Consensus       244 ~~aL~~~  250 (282)
T 4f3v_A          244 AAALKDP  250 (282)
T ss_dssp             HHHHHCT
T ss_pred             HHHHhCC
Confidence            7777544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.67  E-value=5.3e-16  Score=123.49  Aligned_cols=193  Identities=12%  Similarity=-0.027  Sum_probs=166.1

Q ss_pred             hcCChhHHHHHHHHHHhhCCC-hHHHHHH-------HHHHHHhccHHHHHHHHHHHHHhCCcch----------------
Q 036703           32 NLGNVAGARQIFERWMHWMPD-HEGWLSY-------IKFKLRYNEVQRARHIFERLVQCHPYNL----------------   87 (365)
Q Consensus        32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~-------~~~~~~~~~~~~A~~~~~~~l~~~p~~~----------------   87 (365)
                      ..++...|+..|.++++.+|+ ...|..+       +.++...+...++...+.+.+.+.|...                
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            578999999999999999999 8999999       7888888888999999999999777543                


Q ss_pred             -----HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703           88 -----SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus        88 -----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                           .+++.++.++...|++++|.+.|..++.. .|.+    . ..+.++.++.   +.+++++|+..|+.+....++.
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-~p~~----~-~~~~~a~l~~---~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-GSEH----L-VAWMKAVVYG---AAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-TCHH----H-HHHHHHHHHH---HTTCHHHHHHHHTTGGGCSCHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCch----H-HHHHHHHHHH---HcCCHHHHHHHHHHhhccCCcc
Confidence                 34556899999999999999999999888 7665    6 8899999999   9999999999999887643221


Q ss_pred             hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 036703          163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN--PM-NYDTWFDYIRLEERVGNQERVREVYERAIANVPP  239 (365)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  239 (365)
                      ....++..++..+...|.++        +|+..|++++...  |. ..++++.+|.++...|+.++|+..|++++...|.
T Consensus       169 ~~~~a~~~LG~al~~LG~~~--------eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLALFT--------EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             cHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            12457888888999999876        6999999998654  65 5679999999999999999999999999999998


Q ss_pred             chh
Q 036703          240 AEE  242 (365)
Q Consensus       240 ~~~  242 (365)
                       ..
T Consensus       241 -~~  242 (282)
T 4f3v_A          241 -PK  242 (282)
T ss_dssp             -HH
T ss_pred             -HH
Confidence             53

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.67  E-value=1.3e-15  Score=115.55  Aligned_cols=120  Identities=7%  Similarity=0.102  Sum_probs=114.0

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHH-HHHhccH--HHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKF-KLRYNEV--QRARHIF   76 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~-~~~~~~~--~~A~~~~   76 (365)
                      ++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+ ...|..++.+ +...|++  ++|...|
T Consensus        25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~  104 (177)
T 2e2e_A           25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI  104 (177)
T ss_dssp             --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999998 7899999999 8889998  9999999


Q ss_pred             HHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           77 ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        77 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      ++++..+|+++.++..+|.++...|++++|+..|+++++. .|.+
T Consensus       105 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~  148 (177)
T 2e2e_A          105 DKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL-NSPR  148 (177)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CCTT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh-CCCC
Confidence            9999999999999999999999999999999999999999 8876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=6.8e-15  Score=104.77  Aligned_cols=116  Identities=10%  Similarity=0.044  Sum_probs=107.3

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703           17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD   95 (365)
Q Consensus        17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~   95 (365)
                      |..+..|...|..+...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.
T Consensus         1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT   80 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            556788999999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhh------cCChhhHHHHHHHHHHHHH
Q 036703           96 FEMKMGEVDRARNVYECAVEIFL------ADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        96 ~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~~~~~~~~~~~~  137 (365)
                      ++...|++++|+..|+++++. .      |.+    ..++..+..+..
T Consensus        81 ~~~~~~~~~~A~~~~~~al~~-~p~~~~~p~~----~~~~~~l~~~~~  123 (126)
T 3upv_A           81 AQIAVKEYASALETLDAARTK-DAEVNNGSSA----REIDQLYYKASQ  123 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-HHHHHTTTTH----HHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHh-CcccCCchhH----HHHHHHHHHHHH
Confidence            999999999999999999999 8      665    777776666544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.65  E-value=6.2e-16  Score=126.29  Aligned_cols=193  Identities=12%  Similarity=0.031  Sum_probs=154.6

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF  132 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  132 (365)
                      ...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++. .|.+    ..++..+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~l   78 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQS----VKAHFFL   78 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTC----HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCC----HHHHHHH
Confidence            5678899999999999999999999999999999999999999999999999999999999999 9988    9999999


Q ss_pred             HHHHHhccccchhHHHHHHHHHHhccCCCch---hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703          133 AKFEEMGCNCKETDRARCIYKFALDRIPKGR---AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT  209 (365)
Q Consensus       133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~  209 (365)
                      |.++.   ..|++++|+..|+++++..|.+.   ...++..+...                ++...........|.+..+
T Consensus        79 g~~~~---~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i  139 (281)
T 2c2l_A           79 GQCQL---EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA----------------KKKRWNSIEERRIHQESEL  139 (281)
T ss_dssp             HHHHH---HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH----------------HHHHHHHHHHTCCCCCCHH
T ss_pred             HHHHH---HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH----------------HHHHHHHHHHHHHhhhHHH
Confidence            99999   99999999999999999877542   11223222111                1223333344567778788


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhc
Q 036703          210 WFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIF  280 (365)
Q Consensus       210 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  280 (365)
                      ...++.+.  .|++++|++.++++++..|.+..         +...+...+....+.+++|..+|.++.+.
T Consensus       140 ~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          140 HSYLTRLI--AAERERELEECQRNHEGHEDDGH---------IRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHH---------HTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHHH--HHHHHHHHHHHHhhhccccchhh---------hhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            77777764  78999999999999999998743         33334444322346788999999988764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.65  E-value=1.1e-14  Score=113.87  Aligned_cols=138  Identities=14%  Similarity=0.009  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK   99 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~   99 (365)
                      ...+..+|..+...|++++|+..|++++  .|+..+|..+|.++...|++++|+..|++++..+|+++.++..+|.++..
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            3457788999999999999999999995  56788999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHHHHHhhhhcCC------------hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          100 MGEVDRARNVYECAVEIFLADD------------HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       100 ~~~~~~A~~~~~~a~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      .|++++|+..|+++++. .|.+            .+....++..+|.++.   ..|++++|+..|+++++..|...
T Consensus        84 ~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVLYNIAFMYA---KKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             cccHHHHHHHHHHHHHh-CCCccHHHHHHhccccCccchHHHHHHHHHHH---HccCHHHHHHHHHHHHHcCcccc
Confidence            99999999999999998 7764            1233589999999999   99999999999999999999764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.64  E-value=2.2e-14  Score=107.28  Aligned_cols=130  Identities=13%  Similarity=0.017  Sum_probs=119.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      +..|..+|..+...|++++|+..|+++++..|. ..+|..++.++...|++++|...|++++..+|+++.++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            577999999999999999999999999999998 7899999999999999999999999999999999999999999999


Q ss_pred             hhcchHHHHHHHHHHHhhhhcCChhhHHHHHH--HHHHHHHhccccchhHHHHHHHHHHhc
Q 036703           99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFV--AFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus        99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      ..|++++|+..|+++++. .|.+    ..++.  ..+..+.   ..|++++|+..++++..
T Consensus        93 ~~~~~~~A~~~~~~a~~~-~p~~----~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKV-KPHD----KDAKMKYQECNKIV---KQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHH---HHHHHHHHHHcccchHH
Confidence            999999999999999999 9887    66774  4455577   88999999999988754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.64  E-value=8.1e-15  Score=111.11  Aligned_cols=125  Identities=12%  Similarity=0.111  Sum_probs=114.9

Q ss_pred             HhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH-HHhhcch--HHH
Q 036703           31 ENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF-EMKMGEV--DRA  106 (365)
Q Consensus        31 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~-~~~~~~~--~~A  106 (365)
                      ...|++++|+..++++++.+|+ ..+|..++.++...|++++|+..|+++++.+|+++.++..+|.+ +...|++  ++|
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            4568899999999999999998 79999999999999999999999999999999999999999999 8889998  999


Q ss_pred             HHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          107 RNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      +..|+++++. .|.+    ..++..+|.++.   ..|++++|+..|+++++..|.+.
T Consensus       101 ~~~~~~al~~-~p~~----~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          101 RAMIDKALAL-DSNE----ITALMLLASDAF---MQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHh-CCCc----HHHHHHHHHHHH---HcccHHHHHHHHHHHHhhCCCCc
Confidence            9999999999 9988    999999999999   99999999999999999999864

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.63  E-value=4.3e-17  Score=136.61  Aligned_cols=141  Identities=13%  Similarity=0.132  Sum_probs=128.5

Q ss_pred             hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---------------hHHHHHHHH
Q 036703           32 NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---------------LSAWINFAD   95 (365)
Q Consensus        32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~~~~   95 (365)
                      ..+++++|+..|++++...|. ...|..++..+...|++++|+..|++++..+|++               ..+|..+|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            456777899899999888888 7899999999999999999999999999999988               599999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 036703           96 FEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE  175 (365)
Q Consensus        96 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  175 (365)
                      ++...|++++|+..|+++++. .|.+    ..+++.+|.++.   ..|++++|+..|+++++..|.+  ...+..++.++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~lg~~~~---~~g~~~~A~~~~~~al~l~P~~--~~a~~~l~~~~  274 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALEL-DSNN----EKGLSRRGEAHL---AVNDFELARADFQKVLQLYPNN--KAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHH
Confidence            999999999999999999999 9988    999999999999   9999999999999999999987  56777777777


Q ss_pred             HHcCCch
Q 036703          176 KQYGDRE  182 (365)
Q Consensus       176 ~~~~~~~  182 (365)
                      ...|+..
T Consensus       275 ~~~~~~~  281 (336)
T 1p5q_A          275 QRIRRQL  281 (336)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.63  E-value=4.9e-14  Score=101.32  Aligned_cols=135  Identities=18%  Similarity=0.291  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA  133 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  133 (365)
                      .+|..++..+...|++++|...|++++..+|++...+..++.++...|++++|+..+++++.. .|.+    ..++..++
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~   76 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPRS----AEAWYNLG   76 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTC----HHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-CCCc----hHHHHHHH
Confidence            468889999999999999999999999999999999999999999999999999999999999 8887    88999999


Q ss_pred             HHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCC
Q 036703          134 KFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMN  206 (365)
Q Consensus       134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~  206 (365)
                      .++.   ..|++++|+..++++++..|..  ...+..++.++...|+.+        +|...+++++..+|++
T Consensus        77 ~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~--------~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           77 NAYY---KQGDYDEAIEYYQKALELDPRS--AEAWYNLGNAYYKQGDYD--------EAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHH---TTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCHH--------HHHHHHHHHHHHSTTC
T ss_pred             HHHH---HhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHccHH--------HHHHHHHHHHccCCCC
Confidence            9999   9999999999999999988876  567888888888888865        6999999999988864

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.62  E-value=3e-15  Score=108.99  Aligned_cols=115  Identities=12%  Similarity=0.089  Sum_probs=106.0

Q ss_pred             HHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhc
Q 036703           41 QIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLA  119 (365)
Q Consensus        41 ~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  119 (365)
                      ..|++++..+|+ ...+..++..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++.. .|
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p   83 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-DI   83 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CC
Confidence            578888888998 7889999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             CChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          120 DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      .+    +.++..+|.++.   ..|++++|+..|+++++..|.+.
T Consensus        84 ~~----~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           84 NE----PRFPFHAAECHL---QLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             TC----THHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             CC----cHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCc
Confidence            88    999999999999   99999999999999999888653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.62  E-value=1.3e-14  Score=103.84  Aligned_cols=124  Identities=13%  Similarity=0.046  Sum_probs=115.7

Q ss_pred             HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHH
Q 036703           14 TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN   92 (365)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~   92 (365)
                      ..+|.+...|..+|..+...|++++|+..|++++...|+ ..+|..++.++...|++++|...+++++..+|+++.++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            345677889999999999999999999999999999998 7899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchh
Q 036703           93 FADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKET  145 (365)
Q Consensus        93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (365)
                      +|.++...|++++|+..|+++++. .|.+    ..++..++.++.   ..|++
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~-~p~~----~~~~~~l~~~~~---~~~~~  130 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALEL-DPDN----ETYKSNLKIAEL---KLREA  130 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---HHTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhc-Cccc----hHHHHHHHHHHH---HHhcC
Confidence            999999999999999999999999 9888    889999999988   77764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.62  E-value=1.7e-14  Score=103.56  Aligned_cols=120  Identities=14%  Similarity=0.092  Sum_probs=113.0

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA   94 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~   94 (365)
                      .|.+...|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|...|+++++.+|+++.++..+|
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            5777899999999999999999999999999999998 789999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703           95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK  143 (365)
Q Consensus        95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (365)
                      .++...|++++|+..|+++++. .|.+    ..++..++.++.   ..|
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~-~p~~----~~~~~~l~~~~~---~~~  132 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDL-DSSC----KEAADGYQRCMM---AQY  132 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-CGGG----THHHHHHHHHHH---HHT
T ss_pred             HHHHHHhhHHHHHHHHHHHHHh-CCCc----hHHHHHHHHHHH---Hhc
Confidence            9999999999999999999999 8877    888998988887   554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=99.62  E-value=1.1e-14  Score=100.82  Aligned_cols=120  Identities=17%  Similarity=0.262  Sum_probs=105.8

Q ss_pred             HcCCCCHHHHHHHHHHHHHhCCH------HHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHH
Q 036703          201 RKNPMNYDTWFDYIRLEERVGNQ------ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVY  274 (365)
Q Consensus       201 ~~~p~~~~~~~~~~~~~~~~~~~------~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  274 (365)
                      -..|++++.|..++......|+.      ++.++.|++++...|++. ...|++|+.+|+.||.+.  ..++.++|+.+|
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~~--ei~D~d~aR~vy   83 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAELK--AIQEPDDARDYF   83 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHHH--HHHCGGGCHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHHH--HhcCHHHHHHHH
Confidence            35799999999999999999999      999999999999999986 789999999999999995  559999999999


Q ss_pred             HHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHH
Q 036703          275 RTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWS  329 (365)
Q Consensus       275 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  329 (365)
                      +.+++.+..+      ..+|..+++++.+.|++..|++++.+++...|.......
T Consensus        84 ~~a~~~hKkF------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           84 QMARANCKKF------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HHHHHHCTTB------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             HHHHHHhHHH------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            9999875222      778899999999999999999999999999997666543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.62  E-value=2.9e-13  Score=105.60  Aligned_cols=179  Identities=11%  Similarity=-0.012  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc----chHHHHHHHHHH
Q 036703           38 GARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG----EVDRARNVYECA  113 (365)
Q Consensus        38 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~A~~~~~~a  113 (365)
                      +|.+.|+++.+. .++.++..++.++...+++++|...|+++.+.  .++.++..+|.++.. +    ++++|+..|+++
T Consensus         4 eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A            4 EPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            355556666553 23555666666666666666666666666543  356666666666665 4    666677777666


Q ss_pred             HhhhhcCChhhHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH----cCCchhhh
Q 036703          114 VEIFLADDHDEAEQLFVAFAKFEEMGCN----CKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQ----YGDREGIE  185 (365)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~  185 (365)
                      .+.   .+    +..+..++.++.   .    .+++++|+.+|+++++..|.......+..++.++..    .++     
T Consensus        80 ~~~---g~----~~a~~~Lg~~y~---~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d-----  144 (212)
T 3rjv_A           80 VEA---GS----KSGEIVLARVLV---NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED-----  144 (212)
T ss_dssp             HHT---TC----HHHHHHHHHHHT---CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC-----
T ss_pred             HHC---CC----HHHHHHHHHHHH---cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC-----
Confidence            433   23    566666666666   5    566677777777776665532223455555555544    223     


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHhcCCC
Q 036703          186 DAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERV-G-----NQERVREVYERAIANVPP  239 (365)
Q Consensus       186 ~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~-~-----~~~~A~~~~~~~~~~~p~  239 (365)
                         .++|+..|+++.+. |.++.++..++.++... |     ++++|...|+++.+....
T Consensus       145 ---~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          145 ---DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             ---HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             ---HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence               23677788888777 66667888888887653 3     788888888888887544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.61  E-value=3.9e-15  Score=115.06  Aligned_cols=147  Identities=8%  Similarity=0.027  Sum_probs=123.1

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h----------------HHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H----------------EGWLSYIKFKL   64 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~----------------~~~~~~~~~~~   64 (365)
                      ++.|.+.++......+.....+..+|..+...|++++|+..|+++++..|. +                .+|..++.++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~   99 (198)
T 2fbn_A           20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN   99 (198)
T ss_dssp             --CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555666788999999999999999999999999998887 4                78999999999


Q ss_pred             HhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccch
Q 036703           65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKE  144 (365)
Q Consensus        65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (365)
                      ..|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++. .|.+    ..++..++.++.   ..++
T Consensus       100 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~l~~~~~---~~~~  171 (198)
T 2fbn_A          100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNN----LDIRNSYELCVN---KLKE  171 (198)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---HHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCc----HHHHHHHHHHHH---HHHH
Confidence            9999999999999999999999999999999999999999999999999999 9988    999999999999   8888


Q ss_pred             hHHHH-HHHHHHh
Q 036703          145 TDRAR-CIYKFAL  156 (365)
Q Consensus       145 ~~~A~-~~~~~~l  156 (365)
                      ..++. ..|.+.+
T Consensus       172 ~~~~~~~~~~~~f  184 (198)
T 2fbn_A          172 ARKKDKLTFGGMF  184 (198)
T ss_dssp             HHC----------
T ss_pred             HHHHHHHHHHHHh
Confidence            87776 4444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.60  E-value=4.8e-14  Score=101.88  Aligned_cols=123  Identities=11%  Similarity=0.026  Sum_probs=107.3

Q ss_pred             HhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHH
Q 036703           14 TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWIN   92 (365)
Q Consensus        14 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~   92 (365)
                      ...|.++..|..+|..+...|++++|+..|++++..+|+ ..+|..++.++...|++++|...|++++..+|+++.+|..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            356788999999999999999999999999999999999 7899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhhhcCCh-hhHHHHHHHHHHHHH
Q 036703           93 FADFEMKMGEVDRARNVYECAVEIFLADDH-DEAEQLFVAFAKFEE  137 (365)
Q Consensus        93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~  137 (365)
                      +|.++...|++++|+..|+++++. .|+.. .....++..+..+..
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSL-AKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHH-ChhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 77610 001555655555544

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.59  E-value=4.4e-14  Score=105.55  Aligned_cols=113  Identities=11%  Similarity=0.035  Sum_probs=105.3

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHH
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFA   94 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~   94 (365)
                      .|.+...|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|++++..+|+++.+|..+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4667889999999999999999999999999999998 889999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703           95 DFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA  133 (365)
Q Consensus        95 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  133 (365)
                      .++...|++++|+..|+++++. .|.+    ...|...+
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~~~  120 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEA-EGNG----GSDAMKRG  120 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-HSSS----CCHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh-CCCc----hHHHHHHH
Confidence            9999999999999999999999 9987    55554443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.59  E-value=1.1e-13  Score=97.99  Aligned_cols=117  Identities=18%  Similarity=0.341  Sum_probs=108.2

Q ss_pred             CCCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHH
Q 036703           16 SPRV-DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINF   93 (365)
Q Consensus        16 ~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~   93 (365)
                      +|.. ..+|..+|.++...|++++|+..|+++++..|+ ...|..++.++...|++++|...|++++...|.++.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l   83 (125)
T 1na0_A            4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL   83 (125)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            5655 788999999999999999999999999999998 78999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           94 ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        94 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      +.++...|++++|...|+++++. .|.+    +.++..++.++.
T Consensus        84 a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~  122 (125)
T 1na0_A           84 GNAYYKQGDYDEAIEYYQKALEL-DPNN----AEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHH
Confidence            99999999999999999999999 8888    888888888776

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.59  E-value=1.7e-13  Score=106.95  Aligned_cols=190  Identities=12%  Similarity=-0.024  Sum_probs=151.9

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhc----cHHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYN----EVQRARHIFER   78 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----~~~~A~~~~~~   78 (365)
                      ++|+..|+++.+.  .++.++..+|.++...+++++|+..|+++.+.. ++.++..++.++.. +    ++++|...|++
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NPQQADYPQARQLAEK   78 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence            4688999999975  678999999999999999999999999998752 37888999999887 7    89999999999


Q ss_pred             HHHhCCcchHHHHHHHHHHHh----hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc----cchhHHHHH
Q 036703           79 LVQCHPYNLSAWINFADFEMK----MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN----CKETDRARC  150 (365)
Q Consensus        79 ~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~  150 (365)
                      +.+  +.++.++..+|.++..    .+++++|+..|+++++. .|.  ...+..+..++.++.   .    .+++++|+.
T Consensus        79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~--~~~~~a~~~Lg~~y~---~g~g~~~d~~~A~~  150 (212)
T 3rjv_A           79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SES--DAAVDAQMLLGLIYA---SGVHGPEDDVKASE  150 (212)
T ss_dssp             HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTS--HHHHHHHHHHHHHHH---HTSSSSCCHHHHHH
T ss_pred             HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCC--cchHHHHHHHHHHHH---cCCCCCCCHHHHHH
Confidence            954  5689999999999998    78999999999999998 652  023789999999999   7    789999999


Q ss_pred             HHHHHhccCCCchhHHHHHHHHHHHHHc-C--CchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 036703          151 IYKFALDRIPKGRAEDLYRKFLAFEKQY-G--DREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYI  214 (365)
Q Consensus       151 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~  214 (365)
                      .|+++++. |.+  ...+..++.++... |  ....     .++|+..|+++.+..  +..+...+.
T Consensus       151 ~~~~A~~~-~~~--~~a~~~Lg~~y~~g~gg~~~~d-----~~~A~~~~~~A~~~g--~~~A~~~l~  207 (212)
T 3rjv_A          151 YFKGSSSL-SRT--GYAEYWAGMMFQQGEKGFIEPN-----KQKALHWLNVSCLEG--FDTGCEEFD  207 (212)
T ss_dssp             HHHHHHHT-SCT--THHHHHHHHHHHHCBTTTBCCC-----HHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred             HHHHHHHc-CCC--HHHHHHHHHHHHcCCCCCCCCC-----HHHHHHHHHHHHHcC--CHHHHHHHH
Confidence            99999987 333  23566666666543 3  1111     347999999999874  344444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.59  E-value=4e-15  Score=129.95  Aligned_cols=148  Identities=12%  Similarity=0.200  Sum_probs=131.3

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh----------------HHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH----------------EGWLSYIKFKLR   65 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~~~~~~~   65 (365)
                      +++|+..|++++...|+....|..+|..+...|++++|+..|+++++.+|..                .+|..++.++.+
T Consensus       250 ~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~  329 (457)
T 1kt0_A          250 FEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK  329 (457)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778888888899999999999999999999999999999999998873                789999999999


Q ss_pred             hccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchh
Q 036703           66 YNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKET  145 (365)
Q Consensus        66 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (365)
                      .|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++. .|.+    ..++..++.++.   ..+++
T Consensus       330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-~P~~----~~a~~~l~~~~~---~~~~~  401 (457)
T 1kt0_A          330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQN----KAARLQISMCQK---KAKEH  401 (457)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--------CHHHHHHHHHH---HHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HHHHH
Confidence            999999999999999999999999999999999999999999999999999 9887    899999999999   99998


Q ss_pred             HHHHH-HHHHHhc
Q 036703          146 DRARC-IYKFALD  157 (365)
Q Consensus       146 ~~A~~-~~~~~l~  157 (365)
                      +++.. .|++++.
T Consensus       402 ~~a~~~~~~~~f~  414 (457)
T 1kt0_A          402 NERDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHh
Confidence            87764 4555544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.59  E-value=1.3e-12  Score=105.37  Aligned_cols=272  Identities=10%  Similarity=0.048  Sum_probs=188.8

Q ss_pred             HHHHhcCChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHH
Q 036703           28 RMEENLGNVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR  105 (365)
Q Consensus        28 ~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  105 (365)
                      +-.+-.|++..++.-   +-++.|.  ...-.-..+.+..+|++...       ....| ...+...++.++.  +.   
T Consensus        21 kn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~~~~-~~~a~~~la~~~~--~~---   84 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ-------DPTSK-LGKVLDLYVQFLD--TK---   84 (310)
T ss_dssp             HHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC-------CSSST-THHHHHHHHHHHT--TT---
T ss_pred             HHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC-------CCCCH-HHHHHHHHHHHhc--cc---
Confidence            445567999988873   3445555  33334445667777776532       11222 2335555566553  22   


Q ss_pred             HHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhh
Q 036703          106 ARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIE  185 (365)
Q Consensus       106 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  185 (365)
                      |+..+++.+.. .+.+    ...+..+|.++.   ..|++++|++++.+++...|.......+...+.++...|+.+   
T Consensus        85 a~~~l~~l~~~-~~~~----~~~~~~la~i~~---~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d---  153 (310)
T 3mv2_B           85 NIEELENLLKD-KQNS----PYELYLLATAQA---ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS---  153 (310)
T ss_dssp             CCHHHHHTTTT-SCCC----HHHHHHHHHHHH---HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH---
T ss_pred             HHHHHHHHHhc-CCCC----cHHHHHHHHHHH---HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH---
Confidence            78888888876 5444    556678899999   999999999999999988773334788888899999999866   


Q ss_pred             HHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHH--HHHhC--CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHH
Q 036703          186 DAIAGKMRLQYEDGVRKNPM----NYDTWFDYIRL--EERVG--NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYA  257 (365)
Q Consensus       186 ~~~~~~a~~~~~~~l~~~p~----~~~~~~~~~~~--~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  257 (365)
                           .|++.++++.+.+|+    +..+...++..  ....|  ++.+|..+|+++....|+...       ..++++  
T Consensus       154 -----~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~-------~~lLln--  219 (310)
T 3mv2_B          154 -----TASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKT-------QLGLLN--  219 (310)
T ss_dssp             -----HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHH-------HHHHHH--
T ss_pred             -----HHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCccc-------HHHHHH--
Confidence                 799999999998883    22444444433  44445  999999999999988886211       112233  


Q ss_pred             HHHhhccCChhHHHHHHHHHHhccccCCCc---ch-hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHH
Q 036703          258 LYKEVDAGDLERTRDVYRTLFIFYFSFSPR---ME-ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTE  333 (365)
Q Consensus       258 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  333 (365)
                       .+ ..+|++++|...++.+++..|+...-   -| ++++..+.+.+....|+  +|.++++++.+.+|+++.+.     
T Consensus       220 -~~-~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~-----  290 (310)
T 3mv2_B          220 -LH-LQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK-----  290 (310)
T ss_dssp             -HH-HHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH-----
T ss_pred             -HH-HHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH-----
Confidence             33 58899999999999888775431000   03 47888888888888887  99999999999999998763     


Q ss_pred             HHhhccchhHHHHHHHHHhcCc
Q 036703          334 LEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       334 ~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                            ++.+....|++++.+.
T Consensus       291 ------d~~~k~~~Fd~~~~ky  306 (310)
T 3mv2_B          291 ------HHQEIDAKFDELVRKY  306 (310)
T ss_dssp             ------HHHHHHHHHHHHHHTC
T ss_pred             ------HHHHHHHHHHHHHHHh
Confidence                  3445556666666544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.57  E-value=5.9e-14  Score=98.84  Aligned_cols=100  Identities=14%  Similarity=0.003  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK   99 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~   99 (365)
                      ..++.+|..+...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45889999999999999999999999999998 89999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHHHHHhhhhcCC
Q 036703          100 MGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus       100 ~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      .|++++|+..|+++++. .|..
T Consensus        98 ~g~~~~A~~~~~~al~~-~P~~  118 (121)
T 1hxi_A           98 EHNANAALASLRAWLLS-QPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHC------
T ss_pred             cCCHHHHHHHHHHHHHh-CcCC
Confidence            99999999999999999 8764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.57  E-value=1.1e-13  Score=108.15  Aligned_cols=134  Identities=15%  Similarity=0.029  Sum_probs=119.1

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|+..|++++  .| ++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|...|+++
T Consensus        21 ~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   97 (213)
T 1hh8_A           21 DWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA   97 (213)
T ss_dssp             CHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            4788999999885  45 5889999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHhCCcch----------------HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703           80 VQCHPYNL----------------SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK  143 (365)
Q Consensus        80 l~~~p~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (365)
                      ++..|.+.                .++..+|.++...|++++|+..|+++++. .|.+                   ..+
T Consensus        98 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~-------------------~~~  157 (213)
T 1hh8_A           98 LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM-KSEP-------------------RHS  157 (213)
T ss_dssp             HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCSG-------------------GGG
T ss_pred             HHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc-Cccc-------------------ccc
Confidence            99888766                99999999999999999999999999999 8876                   445


Q ss_pred             hhHHHHHHHHHHhc
Q 036703          144 ETDRARCIYKFALD  157 (365)
Q Consensus       144 ~~~~A~~~~~~~l~  157 (365)
                      ..+.++..+.+...
T Consensus       158 ~~~~a~~~~~~~~~  171 (213)
T 1hh8_A          158 KIDKAMECVWKQKL  171 (213)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHhccc
Confidence            56666666665444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.56  E-value=2.9e-13  Score=94.73  Aligned_cols=114  Identities=16%  Similarity=0.089  Sum_probs=106.9

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703           19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE   97 (365)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~   97 (365)
                      .+..|..+|..+...|++++|+..|++++...|+ ...|..++.++...|++++|...+++++..+|+++.++..+|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            4678999999999999999999999999999998 789999999999999999999999999999999999999999999


Q ss_pred             HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      ...|++++|+..|+++++. .|.+    +.++..++.+..
T Consensus        83 ~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l~~~~~  117 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKH-EANN----PQLKEGLQNMEA  117 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTT-CTTC----HHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHc-CCCC----HHHHHHHHHhhc
Confidence            9999999999999999999 9888    888888777653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.56  E-value=1.7e-13  Score=102.40  Aligned_cols=116  Identities=13%  Similarity=0.094  Sum_probs=107.8

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|...|++++..+|.+..+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|...|+++
T Consensus        28 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           28 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETV  107 (166)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999998 789999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHH--HHHHhhcchHHHHHHHHHHHhh
Q 036703           80 VQCHPYNLSAWINFA--DFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        80 l~~~p~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      +..+|++..++..++  ..+...|++++|+..+.++...
T Consensus       108 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          108 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            999999998885544  4488889999999999988776

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.56  E-value=6.9e-14  Score=99.44  Aligned_cols=103  Identities=8%  Similarity=0.009  Sum_probs=94.4

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch-------H
Q 036703           17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-------S   88 (365)
Q Consensus        17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~   88 (365)
                      ++...++..+|..+.+.|++++|+..|+++++++|+ ..+|..+|.++...|++++|+..|+++++.+|++.       .
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            344677889999999999999999999999999999 78999999999999999999999999999988653       4


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703           89 AWINFADFEMKMGEVDRARNVYECAVEIFLAD  120 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  120 (365)
                      ++..+|.++...|++++|++.|+++++. .|+
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~-~~~  115 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE-FRD  115 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-SCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcC
Confidence            7888899999999999999999999998 775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=2e-13  Score=121.70  Aligned_cols=168  Identities=10%  Similarity=0.060  Sum_probs=153.0

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc--cH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGN----------VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN--EV   69 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~--~~   69 (365)
                      ++|...+++++..+|++..+|...+.+....|+          +++++..++++++.+|. ..+|...+.+....|  ++
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~  125 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence            578999999999999999999999999999988          89999999999999999 799999999999999  77


Q ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc------
Q 036703           70 QRARHIFERLVQCHPYNLSAWINFADFEMKMG-EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC------  142 (365)
Q Consensus        70 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  142 (365)
                      +++...+.++++.+|.+..+|...+.+....| .++++++.++++++. .|.+    ..+|...+.++.   ..      
T Consensus       126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-~p~n----~saW~~r~~ll~---~l~~~~~~  197 (567)
T 1dce_A          126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSN----YSSWHYRSCLLP---QLHPQPDS  197 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-TCCC----HHHHHHHHHHHH---HHSCCCCS
T ss_pred             HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCC----ccHHHHHHHHHH---hhcccccc
Confidence            99999999999999999999999999999999 899999999999999 9998    999999998877   53      


Q ss_pred             --------chhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCC
Q 036703          143 --------KETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD  180 (365)
Q Consensus       143 --------~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  180 (365)
                              +.++++++.+.+++...|.+.  ..|.-...+....+.
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~--saW~y~~~ll~~~~~  241 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFTDPNDQ--SAWFYHRWLLGRAEP  241 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHCSSCS--HHHHHHHHHHSCCCC
T ss_pred             cccccccHHHHHHHHHHHHHHHhhCCCCc--cHHHHHHHHHhcCCC
Confidence                    778999999999999999984  566666655555444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.2e-13  Score=98.14  Aligned_cols=99  Identities=15%  Similarity=-0.004  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF  132 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  132 (365)
                      ...|...|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++. .|.+    ..+|..+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~l   78 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-DPNF----VRAYIRK   78 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCc----HHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999 9988    9999999


Q ss_pred             HHHHHhccccchhHHHHHHHHHHhccC
Q 036703          133 AKFEEMGCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus       133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~  159 (365)
                      |.++.   ..|++++|+..|+++++..
T Consensus        79 g~~~~---~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           79 ATAQI---AVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHH---HTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHH---HHhCHHHHHHHHHHHHHhC
Confidence            99999   9999999999999999988

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=7.4e-14  Score=124.50  Aligned_cols=198  Identities=10%  Similarity=0.080  Sum_probs=166.6

Q ss_pred             hcCC-hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703           32 NLGN-VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNE----------VQRARHIFERLVQCHPYNLSAWINFADFEMK   99 (365)
Q Consensus        32 ~~g~-~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~   99 (365)
                      ..|. .++|+..+.+++..+|+ ..+|...+.+....|+          ++++...+.+++..+|.+..+|...+-++.+
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            3444 46789999999999999 7999999999988888          9999999999999999999999999999999


Q ss_pred             hc--chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc-hhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 036703          100 MG--EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK-ETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK  176 (365)
Q Consensus       100 ~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  176 (365)
                      .|  +++++++.++++++. .|.+    ..+|...+.+..   ..| .++++++.+.++++.+|.+  ...|.....+..
T Consensus       120 l~~~~~~~el~~~~k~l~~-d~~N----~~aW~~R~~~l~---~l~~~~~~el~~~~~~I~~~p~n--~saW~~r~~ll~  189 (567)
T 1dce_A          120 LPEPNWARELELCARFLEA-DERN----FHCWDYRRFVAA---QAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLP  189 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTCCCHHHHHHHHHTTTTTTCCC--HHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHhh-cccc----ccHHHHHHHHHH---HcCCChHHHHHHHHHHHHHCCCC--ccHHHHHHHHHH
Confidence            99  669999999999999 9998    999999999999   888 8999999999999999998  456666665555


Q ss_pred             HcCCch------hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHhcCC
Q 036703          177 QYGDRE------GIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQER------------VREVYERAIANVP  238 (365)
Q Consensus       177 ~~~~~~------~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~------------A~~~~~~~~~~~p  238 (365)
                      ..+...      .+....++++++.+.+++..+|++..+|+.++-++...+.+++            |+..|.+++...|
T Consensus       190 ~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~  269 (567)
T 1dce_A          190 QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGS  269 (567)
T ss_dssp             HHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTB
T ss_pred             hhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccc
Confidence            532210      1112346689999999999999999999999999988777555            4455677776665


Q ss_pred             C
Q 036703          239 P  239 (365)
Q Consensus       239 ~  239 (365)
                      .
T Consensus       270 ~  270 (567)
T 1dce_A          270 R  270 (567)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.55  E-value=1.1e-13  Score=97.35  Aligned_cols=101  Identities=18%  Similarity=0.077  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA  133 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  133 (365)
                      ..|...+..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++. .|.+    ..++..+|
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~----~~~~~~la   92 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKD----IAVHAALA   92 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999999999999 9988    99999999


Q ss_pred             HHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703          134 KFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       134 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      .++.   ..|++++|+..|+++++..|..
T Consensus        93 ~~~~---~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           93 VSHT---NEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHC-----
T ss_pred             HHHH---HcCCHHHHHHHHHHHHHhCcCC
Confidence            9999   9999999999999999998864

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=4.4e-13  Score=98.06  Aligned_cols=118  Identities=10%  Similarity=0.034  Sum_probs=110.8

Q ss_pred             hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH
Q 036703           15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW   90 (365)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   90 (365)
                      ..|.+...|..+|..+...|++++|+..|+++++..|+    ..+|..++.++...|++++|+..+++++..+|+++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            45778899999999999999999999999999999998    57899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           91 INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      ..+|.++...|++++|+..|+++++. .|.+    ..++..++.+..
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~l~~~~~  144 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSL-EPKN----KVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH-CSSC----HHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc----HHHHHHHHHHHh
Confidence            99999999999999999999999999 9988    888888877765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.54  E-value=2.1e-13  Score=97.74  Aligned_cols=121  Identities=12%  Similarity=0.023  Sum_probs=110.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc
Q 036703          203 NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF  282 (365)
Q Consensus       203 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~  282 (365)
                      .|.+...|..+|..+...|++++|...|++++...|.+.         .++..++..+ ...|++++|+..++++++.. 
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~-   80 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA---------KLYSNRAACY-TKLLEFQLALKDCEECIQLE-   80 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH---------HHHHHHHHHH-TTTTCHHHHHHHHHHHHHHC-
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------HHHHHHHHHH-HHhccHHHHHHHHHHHHHhC-
Confidence            466778999999999999999999999999999999874         3788888887 69999999999999999987 


Q ss_pred             cCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccc
Q 036703          283 SFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDE  340 (365)
Q Consensus       283 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  340 (365)
                            |+ +..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|+
T Consensus        81 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           81 ------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             ------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence                  54 77889999999999999999999999999999999999999999987764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.54  E-value=1e-13  Score=96.18  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=101.0

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--chHHHHH
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY--NLSAWIN   92 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~   92 (365)
                      +|++..+|..+|.++...|++++|+..|+++++..|. ..+|..++.++...|++++|...|+++++.+|+  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            6888999999999999999999999999999999998 789999999999999999999999999999999  9999999


Q ss_pred             HHHHHHhh-cchHHHHHHHHHHHhhhhcCC
Q 036703           93 FADFEMKM-GEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        93 ~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      +|.++... |++++|++.+++++.. .|.+
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~-~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLE-HHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGG-CCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhc-ccCC
Confidence            99999999 9999999999999999 8764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.54  E-value=3.1e-13  Score=96.04  Aligned_cols=106  Identities=10%  Similarity=0.069  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQLF  129 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~  129 (365)
                      ..++..+|..+.+.|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++. .|..   ......++
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV-GRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh-CcccchhhHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999999998 7754   12234688


Q ss_pred             HHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703          130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      ..+|.++.   ..|++++|++.|++++...|+.
T Consensus        87 ~~lg~~~~---~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           87 SRAGNAFQ---KQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             HHHHHHHH---HTTCHHHHHHHHHHHHHHSCCH
T ss_pred             HHHHHHHH---HcCCHHHHHHHHHHHHhhCcCH
Confidence            89999999   9999999999999999988764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.53  E-value=1.3e-12  Score=107.43  Aligned_cols=175  Identities=9%  Similarity=-0.026  Sum_probs=139.3

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc--
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H------EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN--   86 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~--   86 (365)
                      +|.....+...+..+...|++++|...++++++..|. .      ..+..++.++...|++++|...|++++...+..  
T Consensus        71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            3555566778889999999999999999999998776 1      234456777888899999999999999865433  


Q ss_pred             ----hHHHHHHHHHHHhhcchHHHHHHHHHHHhhh--hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           87 ----LSAWINFADFEMKMGEVDRARNVYECAVEIF--LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        87 ----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                          ..++..+|.++...|++++|+..|+++++..  .|.+......++.++|.++.   ..|++++|+..|+++++..+
T Consensus       151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~---~~~~y~~Al~~~~kal~~~~  227 (293)
T 2qfc_A          151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY---LDSRYEESLYQVNKAIEISC  227 (293)
T ss_dssp             TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH---HHhhHHHHHHHHHHHHHHHH
Confidence                5688999999999999999999999999430  45431222378999999999   99999999999999998643


Q ss_pred             Cc----hhHHHHHHHHHHHHHcCCchhhhHHHHHHH-HHHHHHHHH
Q 036703          161 KG----RAEDLYRKFLAFEKQYGDREGIEDAIAGKM-RLQYEDGVR  201 (365)
Q Consensus       161 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~l~  201 (365)
                      ..    ....++...+.++...|+.+        +| ...|++++.
T Consensus       228 ~~~~~~~~~~~~~~lg~~y~~~g~~~--------~Ai~~~~~~Al~  265 (293)
T 2qfc_A          228 RINSMALIGQLYYQRGECLRKLEYEE--------AEIEDAYKKASF  265 (293)
T ss_dssp             HTTBCSSHHHHHHHHHHHHHHTTCCH--------HHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHH
Confidence            21    13567888899999999876        46 666777775

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.53  E-value=8.6e-13  Score=106.50  Aligned_cols=184  Identities=11%  Similarity=0.034  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC--C-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703            5 GRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP--D-HEGWLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus         5 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      |+..|++.+...+.+...+..+|.++...|++++|++.+.+++..+|  . ..+....+.++...|+.+.|++.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            56778888877655567778999999999999999999999999987  4 68888999999999999999999999999


Q ss_pred             hCCc----chHHHHHHHHH--HHhhc--chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 036703           82 CHPY----NLSAWINFADF--EMKMG--EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK  153 (365)
Q Consensus        82 ~~p~----~~~~~~~~~~~--~~~~~--~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  153 (365)
                      .+|+    +..+...++..  ....|  ++.+|..+|+++.+. .|+.  ....++.+   ++.   .+|++++|...++
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~~--~~~~lLln---~~~---~~g~~~eAe~~L~  235 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-FPTW--KTQLGLLN---LHL---QQRNIAEAQGIVE  235 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCSH--HHHHHHHH---HHH---HHTCHHHHHHHHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCCc--ccHHHHHH---HHH---HcCCHHHHHHHHH
Confidence            9993    23334444433  44445  999999999999888 7751  11333333   788   9999999999999


Q ss_pred             HHhccC----------CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH
Q 036703          154 FALDRI----------PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT  209 (365)
Q Consensus       154 ~~l~~~----------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~  209 (365)
                      .+++..          |.+  +......+.+....|+          .|.+.++++.+.+|+++.+
T Consensus       236 ~l~~~~p~~~~k~~~~p~~--~~~LaN~i~l~~~lgk----------~a~~l~~qL~~~~P~hp~i  289 (310)
T 3mv2_B          236 LLLSDYYSVEQKENAVLYK--PTFLANQITLALMQGL----------DTEDLTNQLVKLDHEHAFI  289 (310)
T ss_dssp             HHHSHHHHTTTCHHHHSSH--HHHHHHHHHHHHHTTC----------TTHHHHHHHHHTTCCCHHH
T ss_pred             HHHHhcccccccccCCCCC--HHHHHHHHHHHHHhCh----------HHHHHHHHHHHhCCCChHH
Confidence            888764          444  6667677666667775          3778999999999999654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.52  E-value=3.9e-13  Score=100.38  Aligned_cols=104  Identities=13%  Similarity=0.081  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF  132 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  132 (365)
                      ...|..++..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++. .|.+    ..+|..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~l   85 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV-DPKY----SKAWSRL   85 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC----HHHHHHH
Confidence            5688999999999999999999999999999999999999999999999999999999999999 9988    9999999


Q ss_pred             HHHHHhccccchhHHHHHHHHHHhccCCCchh
Q 036703          133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRA  164 (365)
Q Consensus       133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  164 (365)
                      |.++.   ..|++++|+..|+++++..|.+..
T Consensus        86 g~~~~---~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           86 GLARF---DMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHH---HTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHH---HccCHHHHHHHHHHHHHhCCCchH
Confidence            99999   999999999999999999998753

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.52  E-value=2.1e-13  Score=98.08  Aligned_cols=85  Identities=15%  Similarity=0.126  Sum_probs=59.5

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChh----------HHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc---
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVA----------GARQIFERWMHWMPD-HEGWLSYIKFKLRYN---   67 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~----------~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~---   67 (365)
                      |++|+..|+++++.+|+++.+|..+|.++...++++          +|+..|+++++++|+ ..+|..+|.++.+.|   
T Consensus        18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~   97 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   97 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC
Confidence            567777888888888888888887777777776643          677777777777776 566777776666653   


Q ss_pred             --------cHHHHHHHHHHHHHhCCcc
Q 036703           68 --------EVQRARHIFERLVQCHPYN   86 (365)
Q Consensus        68 --------~~~~A~~~~~~~l~~~p~~   86 (365)
                              ++++|+..|+++++++|++
T Consensus        98 P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           98 PDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cchhhhhccHHHHHHHHHHHHHhCCCC
Confidence                    5666666666666666654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.51  E-value=5.3e-13  Score=99.40  Aligned_cols=114  Identities=8%  Similarity=-0.046  Sum_probs=103.5

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHhh------------------CCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703           19 VDQLWNNYIRMEENLGNVAGARQIFERWMHW------------------MPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------------------~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ....+...|..+...|++++|+..|.+++..                  +|. ..+|..++.++...|++++|+..+.++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3677899999999999999999999999998                  555 578999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH-HHHHHHHHHHH
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE-QLFVAFAKFEE  137 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~  137 (365)
                      +..+|+++.++..+|.++...|++++|+..|+++++. .|.+    . .+...+..+..
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~p~~----~~~~~~~l~~~~~  143 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN-HPAA----ASVVAREMKIVTE  143 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CGGG----HHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999 9887    5 55666665555

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.51  E-value=3.9e-14  Score=109.42  Aligned_cols=144  Identities=12%  Similarity=-0.024  Sum_probs=115.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch----------------H
Q 036703           26 YIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL----------------S   88 (365)
Q Consensus        26 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----------------~   88 (365)
                      .+......|.+++|...++......+. ...|...|..+...|++++|...|.+++...|.++                .
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            344445567777777777665554444 57889999999999999999999999999999887                8


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHH
Q 036703           89 AWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLY  168 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  168 (365)
                      ++..+|.++...|++++|+..++++++. .|.+    ..++..+|.++.   ..|++++|+..|+++++..|.+  ..++
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~p~~--~~~~  159 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKI-DKNN----VKALYKLGVANM---YFGFLEEAKENLYKAASLNPNN--LDIR  159 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHSTTC--HHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cccc----HHHHHHHHHHHH---HcccHHHHHHHHHHHHHHCCCc--HHHH
Confidence            9999999999999999999999999999 9988    999999999999   9999999999999999999987  4566


Q ss_pred             HHHHHHHHHcC
Q 036703          169 RKFLAFEKQYG  179 (365)
Q Consensus       169 ~~~~~~~~~~~  179 (365)
                      ..+..+....+
T Consensus       160 ~~l~~~~~~~~  170 (198)
T 2fbn_A          160 NSYELCVNKLK  170 (198)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66665554443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.50  E-value=8.3e-12  Score=102.60  Aligned_cols=178  Identities=10%  Similarity=-0.056  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh----HHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHH
Q 036703          126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA----EDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVR  201 (365)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~  201 (365)
                      ...+...+..+.   ..|++++|.+.++++++..+....    ...+...+.++...|+.+        +|+..|++++.
T Consensus        75 ~~~l~~~~~~~~---~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~  143 (293)
T 2qfc_A           75 KKQFKDQVIMLC---KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYE--------YCILELKKLLN  143 (293)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHH--------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH---HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHH
Confidence            556667788888   999999999999999987765431    123334455666667755        79999999998


Q ss_pred             cCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHH
Q 036703          202 KNPMN------YDTWFDYIRLEERVGNQERVREVYERAI---ANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRD  272 (365)
Q Consensus       202 ~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  272 (365)
                      ..+..      ..++..+|.++...|++++|...|++++   ...|.+...     .+.++.++|..+ ...|++++|+.
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~-----~~~~~~nlg~~y-~~~~~y~~Al~  217 (293)
T 2qfc_A          144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF-----DVKVRYNHAKAL-YLDSRYEESLY  217 (293)
T ss_dssp             TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-----HHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc-----hHHHHHhHHHHH-HHHhhHHHHHH
Confidence            65543      4688999999999999999999999999   456654321     124788889888 69999999999


Q ss_pred             HHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccH-HHHHHHHHhh
Q 036703          273 VYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPC-RKLYEKYLEW  320 (365)
Q Consensus       273 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~  320 (365)
                      .+++++...+.....+....++..+|.++...|++++| ...|++++..
T Consensus       218 ~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          218 QVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            99999988633222111277899999999999999999 8889999875

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.50  E-value=7.4e-13  Score=94.53  Aligned_cols=115  Identities=9%  Similarity=0.048  Sum_probs=104.8

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-------hH
Q 036703           17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN-------LS   88 (365)
Q Consensus        17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~   88 (365)
                      |..+..|..+|..+...|++++|+..|++++...|. ..+|..++.++...|++++|...+++++...|++       +.
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            445778999999999999999999999999999998 7899999999999999999999999999998876       88


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           89 AWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        89 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      ++..+|.++...|++++|+..|+++++. .| +    +..+..++.+..
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~-~----~~~~~~l~~~~~  123 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAE-HR-T----PDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CC-C----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHh-CC-C----HHHHHHHHHHHH
Confidence            9999999999999999999999999999 77 4    677777776665

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.50  E-value=1.5e-14  Score=126.86  Aligned_cols=135  Identities=13%  Similarity=0.033  Sum_probs=118.5

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703           19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE   97 (365)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~   97 (365)
                      .+..|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3455677788888999999999999999999999 889999999999999999999999999999999999999999999


Q ss_pred             HhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH--HHhccccchhHHHHHHHH-----------HHhccCCC
Q 036703           98 MKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF--EEMGCNCKETDRARCIYK-----------FALDRIPK  161 (365)
Q Consensus        98 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~-----------~~l~~~p~  161 (365)
                      ...|++++|++.|+++++. .|.+    ..++..++.+  +.   ..|++++|++.++           +++...|.
T Consensus        85 ~~~g~~~eA~~~~~~al~~-~p~~----~~~~~~l~~~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1           85 MALGKFRAALRDYETVVKV-KPHD----KDAKMKYQECNKIV---KQKAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             HHHTCHHHHHHHHHHHHHH-STTC----TTHHHHHHHHHHHH---HHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             HHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHH---HHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence            9999999999999999999 8887    7788888877  77   8899999999999           77776654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.49  E-value=1.4e-12  Score=93.01  Aligned_cols=112  Identities=14%  Similarity=0.112  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHH
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H---EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINF   93 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~   93 (365)
                      ..++.+|..+...|++++|+..|+++++..|+ .   .+|..+|.++...|++++|+..|++++..+|++   +.++..+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            35778899999999999999999999999998 4   699999999999999999999999999999998   8889999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           94 ADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        94 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      |.++...|++++|+..|+++++. .|++    +.+......+..
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~-~p~~----~~~~~a~~~l~~  121 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQ-YPGS----DAARVAQERLQS  121 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-STTS----HHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH-CCCC----hHHHHHHHHHHH
Confidence            99999999999999999999999 9987    555554444433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.49  E-value=2e-12  Score=90.38  Aligned_cols=112  Identities=14%  Similarity=0.075  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF  132 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  132 (365)
                      ...|..++..+...|++++|...|++++..+|+++.++..+|.++...|++++|...++++++. .|.+    +.++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~~   78 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDW----GKGYSRK   78 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-Cccc----HHHHHHH
Confidence            4678889999999999999999999999999999999999999999999999999999999999 9888    9999999


Q ss_pred             HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703          133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF  174 (365)
Q Consensus       133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  174 (365)
                      |.++.   ..|++++|...|+++++..|.+  ...+..+..+
T Consensus        79 a~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~  115 (118)
T 1elw_A           79 AAALE---FLNRFEEAKRTYEEGLKHEANN--PQLKEGLQNM  115 (118)
T ss_dssp             HHHHH---HTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHH
T ss_pred             HHHHH---HHhhHHHHHHHHHHHHHcCCCC--HHHHHHHHHh
Confidence            99999   9999999999999999999986  4555555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.49  E-value=5e-13  Score=96.39  Aligned_cols=101  Identities=13%  Similarity=0.027  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-------h------HHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-------H------EGWLSYIKFKLRYNEVQRARHIFERLVQC----   82 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----   82 (365)
                      ...+...|..+...|++++|+..|+++++++|+       .      .+|...+.++...|++++|+..|+++++.    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            567889999999999999999999999999997       1      28999999999999999999999999999    


Q ss_pred             ---CCcchHHH----HHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           83 ---HPYNLSAW----INFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        83 ---~p~~~~~~----~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                         +|++..+|    +..|..+...|++++|+..|+++++. .|.+
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel-~p~d  135 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM-IEER  135 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHC
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc-CCCc
Confidence               99999999    99999999999999999999999999 8876

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.49  E-value=1.4e-12  Score=100.90  Aligned_cols=155  Identities=12%  Similarity=0.040  Sum_probs=126.2

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCC------C-hHHHHHHHHHHHHhccHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMP------D-HEGWLSYIKFKLRYNEVQRAR   73 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~-~~~~~~~~~~~~~~~~~~~A~   73 (365)
                      ++++|...++......+....++..+|.++...|++++|+..+++++....      . ..++..++.++...|++++|.
T Consensus         7 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   86 (203)
T 3gw4_A            7 DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR   86 (203)
T ss_dssp             CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            467777755554443336688999999999999999999999999998432      2 567889999999999999999


Q ss_pred             HHHHHHHHh---CCc----chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccch
Q 036703           74 HIFERLVQC---HPY----NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKE  144 (365)
Q Consensus        74 ~~~~~~l~~---~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  144 (365)
                      ..+++++..   .++    ...++..+|.++...|++++|+..+++++.. .+..  ......++..++.++.   ..|+
T Consensus        87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~la~~~~---~~g~  162 (203)
T 3gw4_A           87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY-AQQADDQVAIACAFRGLGDLAQ---QEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH---HTTC
T ss_pred             HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHhccchHHHHHHHHHHHHHHH---HCcC
Confidence            999999987   442    3567889999999999999999999999976 4322  1223456788999999   9999


Q ss_pred             hHHHHHHHHHHhccC
Q 036703          145 TDRARCIYKFALDRI  159 (365)
Q Consensus       145 ~~~A~~~~~~~l~~~  159 (365)
                      +++|...++++++..
T Consensus       163 ~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          163 LLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.49  E-value=1.8e-12  Score=92.40  Aligned_cols=118  Identities=18%  Similarity=0.140  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF  132 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  132 (365)
                      ...|..++..+...|+++.|...|++++..+|+++.++..+|.++...|++++|+..++++++. .|.+    ..++..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~~   86 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-DPAY----SKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-CccC----HHHHHHH
Confidence            5688899999999999999999999999999999999999999999999999999999999999 9888    9999999


Q ss_pred             HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCC
Q 036703          133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD  180 (365)
Q Consensus       133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  180 (365)
                      |.++.   ..|++++|+..|+++++..|.+  ...+..++.++...|+
T Consensus        87 ~~~~~---~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           87 GLALS---SLNKHVEAVAYYKKALELDPDN--ETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHH---HTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHTT
T ss_pred             HHHHH---HhCCHHHHHHHHHHHHhcCccc--hHHHHHHHHHHHHHhc
Confidence            99999   9999999999999999999876  4667777776666554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.49  E-value=2e-12  Score=91.39  Aligned_cols=114  Identities=18%  Similarity=0.299  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF  132 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  132 (365)
                      ...|..++..+...|++++|...|++++...|++..++..++.++...|++++|+..++++++. .|.+    ..++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~~~l   83 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNN----AEAWYNL   83 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCcc----HHHHHHH
Confidence            5788999999999999999999999999999999999999999999999999999999999999 8887    8999999


Q ss_pred             HHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 036703          133 AKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK  176 (365)
Q Consensus       133 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  176 (365)
                      +.++.   ..|++++|...|++++...|.+  ...+..++..+.
T Consensus        84 a~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~  122 (125)
T 1na0_A           84 GNAYY---KQGDYDEAIEYYQKALELDPNN--AEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHH---HTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHH
T ss_pred             HHHHH---HhcCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH
Confidence            99999   9999999999999999999876  445555555443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.49  E-value=1.3e-12  Score=107.50  Aligned_cols=154  Identities=8%  Similarity=-0.087  Sum_probs=127.9

Q ss_pred             ChhhHHHHHHHHHHhCCCchH------HHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHhc
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQ------LWNNYIRMEENLGNVAGARQIFERWMHWMPD-------HEGWLSYIKFKLRYN   67 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~------~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~   67 (365)
                      ++++|...+++++...|..+.      .+..+|.++...|++++|+..|++++...+.       ..++..+|.++...|
T Consensus        90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g  169 (293)
T 3u3w_A           90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG  169 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence            578999999999998776654      2335888888899999999999999986544       236889999999999


Q ss_pred             cHHHHHHHHHHHHHh-------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHh
Q 036703           68 EVQRARHIFERLVQC-------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEM  138 (365)
Q Consensus        68 ~~~~A~~~~~~~l~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~  138 (365)
                      ++++|...|+++++.       .+....++..+|.++...|++++|+..++++++. .+..  ......++..+|.++. 
T Consensus       170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~-~~~~~~~~~~~~~~~~lg~~~~-  247 (293)
T 3u3w_A          170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI-SCRINSMALIGQLYYQRGECLR-  247 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTBCTTHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHcCcHHHHHHHHHHHHHHHH-
Confidence            999999999999952       2223568899999999999999999999999988 5432  1233789999999999 


Q ss_pred             ccccch-hHHHHHHHHHHhcc
Q 036703          139 GCNCKE-TDRARCIYKFALDR  158 (365)
Q Consensus       139 ~~~~~~-~~~A~~~~~~~l~~  158 (365)
                        ..|+ +++|+..|++++..
T Consensus       248 --~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          248 --KLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             --HTTCCHHHHHHHHHHHHHH
T ss_pred             --HhCCcHHHHHHHHHHHHHH
Confidence              9995 69999999999864

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.48  E-value=6.3e-13  Score=92.07  Aligned_cols=105  Identities=12%  Similarity=0.147  Sum_probs=99.8

Q ss_pred             CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcC--ChhhHH
Q 036703           50 MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLAD--DHDEAE  126 (365)
Q Consensus        50 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~  126 (365)
                      +|+ ...|..++.++...|++++|...|+++++.+|.+..++..+|.++...|++++|+..|+++++. .|.  +    .
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~----~   76 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-IEDEYN----K   76 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-SCCTTC----H
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-Ccccch----H
Confidence            466 6788999999999999999999999999999999999999999999999999999999999999 988  7    9


Q ss_pred             HHHHHHHHHHHhcccc-chhHHHHHHHHHHhccCCCc
Q 036703          127 QLFVAFAKFEEMGCNC-KETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       127 ~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~  162 (365)
                      .++..++.++.   .. |++++|++.+++++...|.+
T Consensus        77 ~~~~~l~~~~~---~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           77 DVWAAKADALR---YIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHHT---TCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHH---HHhCCHHHHHHHHHHHhhcccCC
Confidence            99999999999   99 99999999999999998875

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.47  E-value=7e-14  Score=117.13  Aligned_cols=143  Identities=15%  Similarity=0.103  Sum_probs=95.0

Q ss_pred             HHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh------------------HHHHHHHHHHHHhccHHHHHH
Q 036703           13 VTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH------------------EGWLSYIKFKLRYNEVQRARH   74 (365)
Q Consensus        13 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------------------~~~~~~~~~~~~~~~~~~A~~   74 (365)
                      +...|.....|..+|..+...|++++|+..|++++...|+.                  .+|..++.++...|++++|+.
T Consensus       172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~  251 (338)
T 2if4_A          172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG  251 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            33445567889999999999999999999999999999983                  389999999999999999999


Q ss_pred             HHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 036703           75 IFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKF  154 (365)
Q Consensus        75 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  154 (365)
                      .|+++++.+|+++.+|+.+|.++...|++++|+..|+++++. .|.+    ..++..++.+...  ..+..+++...|++
T Consensus       252 ~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l-~p~~----~~a~~~L~~l~~~--~~~~~~~a~~~~~~  324 (338)
T 2if4_A          252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY-APDD----KAIRRELRALAEQ--EKALYQKQKEMYKG  324 (338)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCC----HHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999 8887    8888888887430  55778889999999


Q ss_pred             HhccCCCc
Q 036703          155 ALDRIPKG  162 (365)
Q Consensus       155 ~l~~~p~~  162 (365)
                      ++...|.+
T Consensus       325 ~l~~~p~~  332 (338)
T 2if4_A          325 IFKGKDEG  332 (338)
T ss_dssp             --------
T ss_pred             hhCCCCCC
Confidence            99888765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.47  E-value=1.5e-12  Score=93.95  Aligned_cols=104  Identities=13%  Similarity=0.026  Sum_probs=98.6

Q ss_pred             CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHH
Q 036703           50 MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQL  128 (365)
Q Consensus        50 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  128 (365)
                      +|. ...|..++..+...|++++|...|++++..+|+++.+|..+|.++...|++++|+..|+++++. .|.+    +.+
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~   79 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQS----VKA   79 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-Cchh----HHH
Confidence            444 7889999999999999999999999999999999999999999999999999999999999999 9988    999


Q ss_pred             HHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703          129 FVAFAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                      |..+|.++.   ..|++++|+..|++++...|.
T Consensus        80 ~~~l~~~~~---~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           80 HFFLGQCQL---EMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHH---HTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHhhHHHHHHHHHHHHHHChh
Confidence            999999999   999999999999999998776

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.47  E-value=5.7e-13  Score=95.87  Aligned_cols=90  Identities=14%  Similarity=0.193  Sum_probs=77.6

Q ss_pred             HhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcch----------HHHHHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 036703           65 RYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEV----------DRARNVYECAVEIFLADDHDEAEQLFVAFAK  134 (365)
Q Consensus        65 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  134 (365)
                      +.+.+++|+..++++++.+|+++..|+.+|.++...+++          ++|+..|+++++. .|+.    ..+|+.+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-dP~~----~~A~~~LG~   88 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-DPKK----DEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTC----HHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-CcCc----HHHHHHHHH
Confidence            456788999999999999999999999999999888765          5999999999999 9998    999999999


Q ss_pred             HHHhccccc-----------hhHHHHHHHHHHhccCCCc
Q 036703          135 FEEMGCNCK-----------ETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       135 ~~~~~~~~~-----------~~~~A~~~~~~~l~~~p~~  162 (365)
                      .|.   ..|           ++++|+..|+++++..|++
T Consensus        89 ay~---~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           89 AYT---SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHH---HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHH---HhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            999   775           6777777777777777765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.45  E-value=8.7e-14  Score=121.52  Aligned_cols=141  Identities=13%  Similarity=0.099  Sum_probs=122.6

Q ss_pred             hcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---------------hHHHHHHHH
Q 036703           32 NLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---------------LSAWINFAD   95 (365)
Q Consensus        32 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~~~~   95 (365)
                      ..+++++|+..|++++...|. ...|..++..+...|++++|+..|+++++.+|.+               ..+|..+|.
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            345667888888888888888 7899999999999999999999999999999988               689999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 036703           96 FEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFE  175 (365)
Q Consensus        96 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  175 (365)
                      ++.+.|++++|+..|+++++. .|.+    ..+|+.+|.++.   ..|++++|+..|+++++..|.+  ..++..+..++
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~-~p~~----~~a~~~~g~a~~---~~g~~~~A~~~~~~al~l~P~~--~~a~~~l~~~~  395 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGL-DSAN----EKGLYRRGEAQL---LMNEFESAKGDFEKVLEVNPQN--KAARLQISMCQ  395 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTC------CHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhc-CCcc----HHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Confidence            999999999999999999999 9988    999999999999   9999999999999999999987  45667776666


Q ss_pred             HHcCCch
Q 036703          176 KQYGDRE  182 (365)
Q Consensus       176 ~~~~~~~  182 (365)
                      ...++..
T Consensus       396 ~~~~~~~  402 (457)
T 1kt0_A          396 KKAKEHN  402 (457)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.45  E-value=3.7e-13  Score=94.26  Aligned_cols=88  Identities=6%  Similarity=0.106  Sum_probs=50.0

Q ss_pred             hhhHHHHHHHHHHh---CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTL---SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFE   77 (365)
Q Consensus         2 ~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~   77 (365)
                      +++|+..|+++++.   +|+++.+|..+|.++...|++++|+..|+++++.+|+ ..++..++.++...|++++|+..|+
T Consensus         6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~   85 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLL   85 (117)
T ss_dssp             -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44555555555555   3555555555555555555555555555555555555 4555555555555555555555555


Q ss_pred             HHHHhCCcchHH
Q 036703           78 RLVQCHPYNLSA   89 (365)
Q Consensus        78 ~~l~~~p~~~~~   89 (365)
                      +++...|+++.+
T Consensus        86 ~al~~~p~~~~~   97 (117)
T 3k9i_A           86 KIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHCCCHHH
T ss_pred             HHHHhCCCcHHH
Confidence            555555555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.43  E-value=4.1e-13  Score=117.72  Aligned_cols=111  Identities=14%  Similarity=0.109  Sum_probs=102.5

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|...|+++
T Consensus        21 ~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a  100 (477)
T 1wao_1           21 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETV  100 (477)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHH--HHhhcchHHHHHHHH
Q 036703           80 VQCHPYNLSAWINFADF--EMKMGEVDRARNVYE  111 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~--~~~~~~~~~A~~~~~  111 (365)
                      ++.+|++..++..++.+  +...|++++|++.++
T Consensus       101 l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1          101 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999988  888999999999999

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.43  E-value=6.6e-13  Score=92.96  Aligned_cols=89  Identities=18%  Similarity=0.169  Sum_probs=81.0

Q ss_pred             hcCChhHHHHHHHHHHhh---CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHH
Q 036703           32 NLGNVAGARQIFERWMHW---MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRAR  107 (365)
Q Consensus        32 ~~g~~~~A~~~~~~al~~---~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~  107 (365)
                      ..|++++|+..|+++++.   +|+ ..+|..++.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   466 7899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCC
Q 036703          108 NVYECAVEIFLADD  121 (365)
Q Consensus       108 ~~~~~a~~~~~~~~  121 (365)
                      ..|++++.. .|.+
T Consensus        82 ~~~~~al~~-~p~~   94 (117)
T 3k9i_A           82 ELLLKIIAE-TSDD   94 (117)
T ss_dssp             HHHHHHHHH-HCCC
T ss_pred             HHHHHHHHh-CCCc
Confidence            999999999 9987

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.42  E-value=2.6e-11  Score=99.62  Aligned_cols=176  Identities=10%  Similarity=-0.067  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHH----HHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC
Q 036703          128 LFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAED----LYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN  203 (365)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~  203 (365)
                      .+...+..+.   ..|++++|...++++++..+......    .+...+.++...++.+        .|+..|++++...
T Consensus        77 ~l~~~i~~~~---~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~Ai~~~~~al~~~  145 (293)
T 3u3w_A           77 QFKDQVIMLC---KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYE--------YCILELKKLLNQQ  145 (293)
T ss_dssp             HHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHH--------HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHH---HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHH--------HHHHHHHHHHHHh
Confidence            3444566677   89999999999999999776554222    2333555555555644        7999999999865


Q ss_pred             CCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHH
Q 036703          204 PMN------YDTWFDYIRLEERVGNQERVREVYERAIAN---VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVY  274 (365)
Q Consensus       204 p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  274 (365)
                      +..      ..++..+|.++...|++++|...|+++++.   .|.+..     ..+.++.++|.++ ...|++++|+..+
T Consensus       146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~nlg~~y-~~~~~y~~A~~~~  219 (293)
T 3u3w_A          146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE-----FDVKVRYNHAKAL-YLDSRYEESLYQV  219 (293)
T ss_dssp             CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH-----HHHHHHHHHHHHH-HHTTCHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh-----HHHHHHHHHHHHH-HHHhHHHHHHHHH
Confidence            443      237899999999999999999999999963   222221     1245788899988 6999999999999


Q ss_pred             HHHHhccccCCCcchhHHHHHHHHHHHHHhCC-CccHHHHHHHHHhh
Q 036703          275 RTLFIFYFSFSPRMEERRIFKKYIEMELCLGN-IDPCRKLYEKYLEW  320 (365)
Q Consensus       275 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~  320 (365)
                      ++++...+..........++..+|.++...|+ +++|.+.|++++..
T Consensus       220 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          220 NKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            99999865443321227789999999999995 59999999999876

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=5.9e-12  Score=91.98  Aligned_cols=112  Identities=13%  Similarity=0.032  Sum_probs=103.0

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN---LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF  129 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  129 (365)
                      ...|...+..+...|++++|...|+++++.+|++   ..++..+|.++...|++++|+..++++++. .|.+    ..++
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~----~~~~  102 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGD----VKAL  102 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCC----HHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccC----HHHH
Confidence            6789999999999999999999999999999987   899999999999999999999999999999 9988    9999


Q ss_pred             HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703          130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF  174 (365)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  174 (365)
                      ..+|.++.   ..|++++|+..|++++...|.+  ..++..+..+
T Consensus       103 ~~~a~~~~---~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~  142 (148)
T 2dba_A          103 YRRSQALE---KLGRLDQAVLDLQRCVSLEPKN--KVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHH---HHTCHHHHHHHHHHHHHHCSSC--HHHHHHHHHH
T ss_pred             HHHHHHHH---HcCCHHHHHHHHHHHHHcCCCc--HHHHHHHHHH
Confidence            99999999   9999999999999999999986  4455555444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.40  E-value=4.9e-12  Score=107.07  Aligned_cols=124  Identities=18%  Similarity=0.066  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHh----------------hCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMH----------------WMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQC   82 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~----------------~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~   82 (365)
                      ...|..+|..+...|++++|+..|+++++                ..|. ..+|..++.++...|++++|+..++++++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45689999999999999999999999998                5666 689999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHH
Q 036703           83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCI  151 (365)
Q Consensus        83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  151 (365)
                      +|+++.++..+|.++...|++++|+..|+++++. .|.+    ..++..++.++.   ..++.+++.+.
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-~P~~----~~~~~~l~~~~~---~~~~~~~a~k~  363 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-APED----KAIQAELLKVKQ---KIKAQKDKEKA  363 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HHHHHHHHHHH
Confidence            9999999999999999999999999999999999 9988    899999999998   88888776543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.40  E-value=8.2e-12  Score=92.91  Aligned_cols=103  Identities=14%  Similarity=0.114  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHh------------------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQC------------------HPYNLSAWINFADFEMKMGEVDRARNVYECAV  114 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  114 (365)
                      ...|...|..+...|++++|+..|.+++..                  +|.+..+|..+|.++...|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            457888999999999999999999999998                  77778999999999999999999999999999


Q ss_pred             hhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          115 EIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      +. .|.+    +.+|+.+|.++.   ..|++++|+..|++++...|.+.
T Consensus        91 ~~-~p~~----~~a~~~~g~~~~---~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           91 KR-EETN----EKALFRRAKARI---AAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HH-STTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             hc-CCcc----hHHHHHHHHHHH---HHhcHHHHHHHHHHHHhcCCCCH
Confidence            99 9988    999999999999   99999999999999999999873

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.39  E-value=1.5e-11  Score=87.49  Aligned_cols=104  Identities=11%  Similarity=0.066  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch---HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHH
Q 036703           55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL---SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVA  131 (365)
Q Consensus        55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  131 (365)
                      .+...+..+...|++++|...|++++..+|+++   .++..+|.++...|++++|+..|+++++. .|++ +..+.++..
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~p~~-~~~~~~~~~   81 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-YPTH-DKAAGGLLK   81 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTS-TTHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-CCCC-cccHHHHHH
Confidence            467788999999999999999999999999888   79999999999999999999999999999 8875 445778999


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          132 FAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       132 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      +|.++.   ..|++++|+..|+++++..|.+.
T Consensus        82 la~~~~---~~g~~~~A~~~~~~~~~~~p~~~  110 (129)
T 2xev_A           82 LGLSQY---GEGKNTEAQQTLQQVATQYPGSD  110 (129)
T ss_dssp             HHHHHH---HTTCHHHHHHHHHHHHHHSTTSH
T ss_pred             HHHHHH---HcCCHHHHHHHHHHHHHHCCCCh
Confidence            999999   99999999999999999999863

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.39  E-value=1.9e-12  Score=93.33  Aligned_cols=108  Identities=15%  Similarity=0.122  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC-----cchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh---
Q 036703          250 IYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP-----RMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW---  320 (365)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---  320 (365)
                      ...+...|..+ ...|++++|+..|+++++..|+...     ..|. ...|.+.|.++.+.|++++|+..|++++++   
T Consensus        11 a~~~~~~G~~l-~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           11 AYLALSDAQRQ-LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            34667777776 6899999999999999999876311     0011 448999999999999999999999999999   


Q ss_pred             ----CcchHHHH----HHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703          321 ----SPENCYAW----SKYTELEKSLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       321 ----~p~~~~~~----~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                          +|++..+|    ++.|.++...|++++|...|++++++.|.|
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d  135 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  135 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                99999999    999999999999999999999999999854

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.39  E-value=5e-11  Score=103.68  Aligned_cols=205  Identities=10%  Similarity=-0.041  Sum_probs=162.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h-----------------HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H-----------------EGWLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      |..-+.-|+-+...|++++|++.|.++++..|. .                 .+...++.++...|++++|...+.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345666788888999999999999999998775 1                 2477899999999999999999999988


Q ss_pred             hCCcch------HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 036703           82 CHPYNL------SAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYK  153 (365)
Q Consensus        82 ~~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  153 (365)
                      ..+...      .+...++.++...|++++|..++++++.. .+..  ......++..+|.++.   ..|++++|...++
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~l~  159 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF-AKREKRVFLKHSLSIKLATLHY---QKKQYKDSLALIN  159 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH-HHHSSCCSSHHHHHHHHHHHHH---HHTCHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHhCccHHHHHHHHHHHHHHH---HccChHHHHHHHH
Confidence            655322      34555677777889999999999999887 5432  1234678899999999   9999999999999


Q ss_pred             HHhccCC----CchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcC---CCC----HHHHHHHHHHHHHhCC
Q 036703          154 FALDRIP----KGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKN---PMN----YDTWFDYIRLEERVGN  222 (365)
Q Consensus       154 ~~l~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~---p~~----~~~~~~~~~~~~~~~~  222 (365)
                      +++....    ......++...+.++...|++.        +|+..|++++...   +..    ...+..+|.++...|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  231 (434)
T 4b4t_Q          160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLA--------KSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD  231 (434)
T ss_dssp             HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHH--------HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh
Confidence            9876432    2224678888899999999866        7889999888753   333    2456777888888999


Q ss_pred             HHHHHHHHHHHHhc
Q 036703          223 QERVREVYERAIAN  236 (365)
Q Consensus       223 ~~~A~~~~~~~~~~  236 (365)
                      +.+|...|.+++..
T Consensus       232 y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          232 YKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999875

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.37  E-value=9.2e-12  Score=92.35  Aligned_cols=137  Identities=9%  Similarity=0.019  Sum_probs=117.3

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN------   86 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------   86 (365)
                      ..++..+|.++...|++++|+..++++++..|.       ..++..++.++...|++++|...+++++...+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            567899999999999999999999999987654       2478889999999999999999999999876532      


Q ss_pred             hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           87 LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                      ..++..+|.++...|++++|+..++++++. .+..  ......++..++.++.   ..|++++|...++++++...
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQELKDRIGEGRACWSLGNAYT---ALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHccchHhHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHH
Confidence            567889999999999999999999999987 5322  2344677889999999   99999999999999987543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.37  E-value=1.1e-11  Score=88.24  Aligned_cols=124  Identities=13%  Similarity=0.046  Sum_probs=105.2

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC
Q 036703          206 NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS  285 (365)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~  285 (365)
                      ....+..+|..+...|++++|...|++++...|.+.         .++..++..+ ...|++++|+..+++++...|...
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~~   72 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------TYITNQAAVY-FEKGDYNKCRELCEKAIEVGRENR   72 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---------HHHHHHHHHH-HHhccHHHHHHHHHHHHhhccccc
Confidence            457789999999999999999999999999999874         3778888887 689999999999999999976443


Q ss_pred             Ccchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccc
Q 036703          286 PRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDE  340 (365)
Q Consensus       286 ~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  340 (365)
                      ..++. +.++..+|.++...|++++|...|+++++..| +..++..++.+....++
T Consensus        73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            22122 67889999999999999999999999999999 68888888877766554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.37  E-value=1.1e-11  Score=86.34  Aligned_cols=84  Identities=10%  Similarity=0.007  Sum_probs=77.4

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQ   81 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~   81 (365)
                      +.|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+ ...|..++.++...|++++|+..|++++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999998 78999999999999999999999999999


Q ss_pred             hCCcc
Q 036703           82 CHPYN   86 (365)
Q Consensus        82 ~~p~~   86 (365)
                      ..|..
T Consensus        82 ~~~~~   86 (115)
T 2kat_A           82 AAQSR   86 (115)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            88743

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.36  E-value=2.7e-12  Score=107.48  Aligned_cols=138  Identities=13%  Similarity=0.095  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch-----------------HHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-----------------SAWINFADFEMKMGEVDRARNVYECAVE  115 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~  115 (365)
                      ...|...+..+...|++++|+..|++++...|++.                 .+|..+|.++.+.|++++|+..|+++++
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45688889999999999999999999999999776                 4899999999999999999999999999


Q ss_pred             hhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHH
Q 036703          116 IFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ  195 (365)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  195 (365)
                      . .|.+    ..+|+.+|.++.   ..|++++|+..|+++++..|.+  ..++..+..+.......       .++++..
T Consensus       259 ~-~p~~----~~a~~~lg~a~~---~~g~~~~A~~~l~~al~l~p~~--~~a~~~L~~l~~~~~~~-------~~~a~~~  321 (338)
T 2if4_A          259 E-EEKN----PKALFRRGKAKA---ELGQMDSARDDFRKAQKYAPDD--KAIRRELRALAEQEKAL-------YQKQKEM  321 (338)
T ss_dssp             H-CTTC----HHHHHHHHHHHH---TTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred             h-CCCC----HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            9 9988    999999999999   9999999999999999999986  45555555543322221       2267888


Q ss_pred             HHHHHHcCCCCH
Q 036703          196 YEDGVRKNPMNY  207 (365)
Q Consensus       196 ~~~~l~~~p~~~  207 (365)
                      |.+++...|.+.
T Consensus       322 ~~~~l~~~p~~~  333 (338)
T 2if4_A          322 YKGIFKGKDEGG  333 (338)
T ss_dssp             ------------
T ss_pred             HHHhhCCCCCCC
Confidence            999999888764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.33  E-value=4.3e-11  Score=92.47  Aligned_cols=162  Identities=14%  Similarity=0.114  Sum_probs=119.8

Q ss_pred             HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccc
Q 036703           64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCN  141 (365)
Q Consensus        64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  141 (365)
                      ...|++++|...++......+....++..+|.++...|++++|+..+++++.. ....  .+....++..+|.++.   .
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~l~~~~~---~   78 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ-AQKSGDHTAEHRALHQVGMVER---M   78 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHH---H
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHH---H
Confidence            35678888888555444433356788888899999999999999999998885 3321  2344678888999999   9


Q ss_pred             cchhHHHHHHHHHHhcc---CCCc--hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCC--CC----HHHH
Q 036703          142 CKETDRARCIYKFALDR---IPKG--RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNP--MN----YDTW  210 (365)
Q Consensus       142 ~~~~~~A~~~~~~~l~~---~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p--~~----~~~~  210 (365)
                      .|++++|+..+++++..   .++.  .....+..++..+...|+++        +|...+++++...+  .+    ..++
T Consensus        79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~  150 (203)
T 3gw4_A           79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA--------GARQEYEKSLVYAQQADDQVAIACAF  150 (203)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHhccchHHHHHHH
Confidence            99999999999998886   3422  23556777788888888865        68888888886432  22    2346


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 036703          211 FDYIRLEERVGNQERVREVYERAIANV  237 (365)
Q Consensus       211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~  237 (365)
                      ..++.++...|++++|...+++++...
T Consensus       151 ~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          151 RGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            889999999999999999999998864

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.31  E-value=3.4e-10  Score=98.37  Aligned_cols=212  Identities=13%  Similarity=0.117  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch-----------------HHHHHHHHHHHhhcchHHHHHHHHHHHhhh
Q 036703           55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-----------------SAWINFADFEMKMGEVDRARNVYECAVEIF  117 (365)
Q Consensus        55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  117 (365)
                      .-+.-+.-+...|++++|++.|.++++..|...                 .++..+|.+|...|++++|.+.+.++++. 
T Consensus         6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~-   84 (434)
T 4b4t_Q            6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY-   84 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH-
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence            334557777889999999999999999887543                 34788999999999999999999999987 


Q ss_pred             hcCCh--hhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc----hhHHHHHHHHHHHHHcCCchhhhHHHHHH
Q 036703          118 LADDH--DEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG----RAEDLYRKFLAFEKQYGDREGIEDAIAGK  191 (365)
Q Consensus       118 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (365)
                      .+...  .....+...++.++.   ..|++++|..++++++...+..    ....++..++.++...|++.        .
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~  153 (434)
T 4b4t_Q           85 MMQFAKSKTVKVLKTLIEKFEQ---VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYK--------D  153 (434)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHCS---CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHH--------H
T ss_pred             HHHccchHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChH--------H
Confidence            65431  112345566777777   8899999999999988743221    24678888899999999866        6


Q ss_pred             HHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccC
Q 036703          192 MRLQYEDGVRK------NPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAG  265 (365)
Q Consensus       192 a~~~~~~~l~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (365)
                      |...+++++..      .|....++...+.++...|++++|...+++++...+..+...  .....++...+.++ ...+
T Consensus       154 A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~g~~~-~~~~  230 (434)
T 4b4t_Q          154 SLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT--QTVAELDLMSGILH-CEDK  230 (434)
T ss_dssp             HHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH--HHHHHHHHHHHHHT-TSSS
T ss_pred             HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch--HHHHHHHHHHHHHH-HHHH
Confidence            88888887764      223357899999999999999999999999987633211100  00133566667776 5889


Q ss_pred             ChhHHHHHHHHHHhcc
Q 036703          266 DLERTRDVYRTLFIFY  281 (365)
Q Consensus       266 ~~~~a~~~~~~a~~~~  281 (365)
                      ++++|...|..++...
T Consensus       231 ~y~~A~~~~~~a~~~~  246 (434)
T 4b4t_Q          231 DYKTAFSYFFESFESY  246 (434)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHh
Confidence            9999999999998764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.30  E-value=2.7e-11  Score=102.49  Aligned_cols=108  Identities=10%  Similarity=0.037  Sum_probs=102.2

Q ss_pred             ChhhHHHHHHHHHH----------------hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVT----------------LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFK   63 (365)
Q Consensus         1 ~~~~A~~~~~~~l~----------------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~   63 (365)
                      ++++|+..|+++++                .+|.+..+|..+|.++...|++++|+..++++++.+|+ ..+|..++.++
T Consensus       238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  317 (370)
T 1ihg_A          238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW  317 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            57899999999998                78888999999999999999999999999999999999 88999999999


Q ss_pred             HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHH
Q 036703           64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARN  108 (365)
Q Consensus        64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~  108 (365)
                      ...|++++|+..|+++++.+|++..++..++.++...++.+++.+
T Consensus       318 ~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          318 QGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=99.26  E-value=2.2e-10  Score=79.65  Aligned_cols=105  Identities=17%  Similarity=0.171  Sum_probs=93.3

Q ss_pred             hCCCchHHHHHHHHHHHhcCCh------hHHHHHHHHHHhhCCC---------hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703           15 LSPRVDQLWNNYIRMEENLGNV------AGARQIFERWMHWMPD---------HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~g~~------~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ..|++++.|..+.......|++      +..+.+|++|+..-|-         ..+|..++.+ ...+|.++|+.+|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            4799999999999999999999      8999999999976653         4578888877 4568999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      +..+..-..+|+.+|+++.++|+...|++++.+++.. .|.+
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~-~~k~  127 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER-GAVP  127 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBC
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CCCc
Confidence            9988777999999999999999999999999999999 8876

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.25  E-value=2e-10  Score=79.92  Aligned_cols=83  Identities=13%  Similarity=0.083  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 036703           37 AGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVE  115 (365)
Q Consensus        37 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  115 (365)
                      +.|+..|+++++.+|+ ..+|..+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4688999999999999 789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcC
Q 036703          116 IFLAD  120 (365)
Q Consensus       116 ~~~~~  120 (365)
                      . .|.
T Consensus        82 ~-~~~   85 (115)
T 2kat_A           82 A-AQS   85 (115)
T ss_dssp             H-HHH
T ss_pred             h-ccc
Confidence            8 764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.24  E-value=1.5e-10  Score=85.76  Aligned_cols=146  Identities=12%  Similarity=0.020  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC
Q 036703          207 YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP  286 (365)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~  286 (365)
                      ..++..+|.++...|++++|...+++++...+......   ....++..++..+ ...|++++|+..+++++...+....
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~   84 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA---AERIAYSNLGNAY-IFLGEFETASEYYKKTLLLARQLKD   84 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCch---HHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            35788899999999999999999999998755432110   1134677788887 6899999999999999988644332


Q ss_pred             cchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc------chHHHHHHHHHHHhhccchhHHHHHHHHHhcCcC
Q 036703          287 RMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP------ENCYAWSKYTELEKSLDETERARAIFELAIAQPI  356 (365)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  356 (365)
                      ......++..+|.++...|++++|...++++++..+      ....++..++.++...|++++|...++++++...
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            101166788999999999999999999999997732      2356888999999999999999999999987654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.24  E-value=1.6e-10  Score=76.47  Aligned_cols=85  Identities=16%  Similarity=0.286  Sum_probs=73.7

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHH
Q 036703           17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFAD   95 (365)
Q Consensus        17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~   95 (365)
                      |.+..+|..+|.++...|++++|+..|+++++..|+ ..+|..++.++...|++++|...|+++++.+|+++.++..++.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            345778888999999999999999999999999888 7888889999999999999999999999999988888888888


Q ss_pred             HHHhhc
Q 036703           96 FEMKMG  101 (365)
Q Consensus        96 ~~~~~~  101 (365)
                      ++...|
T Consensus        86 ~~~~~g   91 (91)
T 1na3_A           86 AKQKQG   91 (91)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            877654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.22  E-value=1.1e-11  Score=85.69  Aligned_cols=94  Identities=9%  Similarity=-0.017  Sum_probs=85.6

Q ss_pred             chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------hHHHH
Q 036703           19 VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN------LSAWI   91 (365)
Q Consensus        19 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~   91 (365)
                      +...|..+|..+...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|++++..+|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            4678999999999999999999999999999998 7899999999999999999999999999999988      88889


Q ss_pred             HHHHHHHhhcchHHHHHHHHH
Q 036703           92 NFADFEMKMGEVDRARNVYEC  112 (365)
Q Consensus        92 ~~~~~~~~~~~~~~A~~~~~~  112 (365)
                      .++.++...|+++.|+..+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999998888777665554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.14  E-value=5.3e-10  Score=75.48  Aligned_cols=71  Identities=14%  Similarity=0.102  Sum_probs=62.6

Q ss_pred             hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703           15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY   85 (365)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~   85 (365)
                      .+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..++.++...|++++|+..|+++++..|.
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            47899999999999999999999999999999999998 789999999999999999999999999988764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.12  E-value=8.6e-08  Score=75.63  Aligned_cols=116  Identities=8%  Similarity=-0.042  Sum_probs=90.5

Q ss_pred             CCCchhHHHHHHHHHHHHH---cCCchhhhHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHh-----CCHHHHHH
Q 036703          159 IPKGRAEDLYRKFLAFEKQ---YGDREGIEDAIAGKMRLQYEDGVRKNPM--NYDTWFDYIRLEERV-----GNQERVRE  228 (365)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~l~~~p~--~~~~~~~~~~~~~~~-----~~~~~A~~  228 (365)
                      .|.+....+|...+..-.-   .|+...+..  ...|+..++++++++|+  +..+|..+|.+|...     |+.++|+.
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~--l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~  225 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDT--VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT  225 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHH--HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHh--HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence            4555456788887665432   344443332  45899999999999999  677999999999884     99999999


Q ss_pred             HHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccC
Q 036703          229 VYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSF  284 (365)
Q Consensus       229 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~  284 (365)
                      +|+++++.+|+..        +..+..|+.++....|+++.+...+++++...|..
T Consensus       226 ~ferAL~LnP~~~--------id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          226 AFEHLTRYCSAHD--------PDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHCCTTC--------SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHhCCCCC--------chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            9999999999742        23778899987433699999999999999997553

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.11  E-value=1.4e-09  Score=71.85  Aligned_cols=80  Identities=19%  Similarity=0.359  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAF  132 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  132 (365)
                      ...|..++..+...|++++|...|++++..+|+++.++..+|.++...|++++|+..|+++++. .|.+    ..++..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~----~~~~~~l   83 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNN----AEAKQNL   83 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCC----HHHHHHH
Confidence            5788999999999999999999999999999999999999999999999999999999999999 9988    8999999


Q ss_pred             HHHHH
Q 036703          133 AKFEE  137 (365)
Q Consensus       133 ~~~~~  137 (365)
                      +.++.
T Consensus        84 ~~~~~   88 (91)
T 1na3_A           84 GNAKQ   88 (91)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98876

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.08  E-value=4.6e-08  Score=85.99  Aligned_cols=178  Identities=11%  Similarity=0.048  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhh--CCChHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHh--CCcch
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHW--MPDHEGWLSYIKFKLRY---------NEVQRARHIFERLVQC--HPYNL   87 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~l~~--~p~~~   87 (365)
                      ..+......+.+.|++++|..+|+++.+.  .|+..+|..++..+...         ++.+.|..+|+++...  .| +.
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~  105 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NE  105 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CH
Confidence            34667788899999999999999999874  57778888888887643         4588999999998875  46 88


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc--CCCchhH
Q 036703           88 SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR--IPKGRAE  165 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~  165 (365)
                      .+|..+...+.+.|+.++|.++|+++.+.+...+    ...|..+...+.   +.|+.++|.++|++..+.  .|+   .
T Consensus       106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~tyn~lI~~~~---~~g~~~~A~~l~~~M~~~G~~Pd---~  175 (501)
T 4g26_A          106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR----LRSYGPALFGFC---RKGDADKAYEVDAHMVESEVVPE---E  175 (501)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTTCCCC---H
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----cceehHHHHHHH---HCCCHHHHHHHHHHHHhcCCCCC---H
Confidence            8999999999999999999999999988744555    888999999999   999999999999998874  343   5


Q ss_pred             HHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Q 036703          166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK--NPMNYDTWFDYIRLEE  218 (365)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~--~p~~~~~~~~~~~~~~  218 (365)
                      ..|..++..+.+.|+.+        +|..+++++-+.  .| +...+..+...+.
T Consensus       176 ~ty~~Li~~~~~~g~~d--------~A~~ll~~Mr~~g~~p-s~~T~~~l~~~F~  221 (501)
T 4g26_A          176 PELAALLKVSMDTKNAD--------KVYKTLQRLRDLVRQV-SKSTFDMIEEWFK  221 (501)
T ss_dssp             HHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHTSSB-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCHH--------HHHHHHHHHHHhCCCc-CHHHHHHHHHHHh
Confidence            68899999999999865        688999887763  44 3455555555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.06  E-value=9.6e-10  Score=74.03  Aligned_cols=89  Identities=15%  Similarity=0.140  Sum_probs=76.7

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhhCCC-hH-HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703           24 NNYIRMEENLGNVAGARQIFERWMHWMPD-HE-GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG  101 (365)
Q Consensus        24 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~-~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  101 (365)
                      +..|..+...|++++|+..|+++++.+|+ .. +|..+|.++...|++++|+..|+++++.+|+++.++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            45788888999999999999999999998 67 89999999999999999999999999999988887743        6


Q ss_pred             chHHHHHHHHHHHhhhhcCC
Q 036703          102 EVDRARNVYECAVEIFLADD  121 (365)
Q Consensus       102 ~~~~A~~~~~~a~~~~~~~~  121 (365)
                      .+.++...|++++.. .|++
T Consensus        76 ~~~~a~~~~~~~~~~-~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYN-QLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHH-HHCC
T ss_pred             HHHHHHHHHHHHhcc-Cccc
Confidence            777888888888877 6654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=99.05  E-value=2.4e-08  Score=78.70  Aligned_cols=150  Identities=15%  Similarity=0.122  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHHHHhcC---------------------ChhHHHHHHHHHHh--------------
Q 036703            4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLG---------------------NVAGARQIFERWMH--------------   48 (365)
Q Consensus         4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g---------------------~~~~A~~~~~~al~--------------   48 (365)
                      -...+++..+..+|++..+....+..|...+                     ++..|+++|.++..              
T Consensus        50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~~~  129 (301)
T 3u64_A           50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPGFT  129 (301)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence            3567888899999999766655555544321                     24456777666544              


Q ss_pred             -----------------hCCC---hHHHHHHHHHHH-H--------hccHHHHHHHHHHHHHhCCc--chHHHHHHHHHH
Q 036703           49 -----------------WMPD---HEGWLSYIKFKL-R--------YNEVQRARHIFERLVQCHPY--NLSAWINFADFE   97 (365)
Q Consensus        49 -----------------~~p~---~~~~~~~~~~~~-~--------~~~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~   97 (365)
                                       .+|+   .-.|...+.... .        .+....|+..++++++++|+  +..+|..+|.+|
T Consensus       130 ~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY  209 (301)
T 3u64_A          130 REVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFY  209 (301)
T ss_dssp             HHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence                             1222   235666554432 1        13578899999999999998  678999999999


Q ss_pred             Hhh-----cchHHHHHHHHHHHhhhhcC-ChhhHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHhccCCC
Q 036703           98 MKM-----GEVDRARNVYECAVEIFLAD-DHDEAEQLFVAFAKFEEMGCN-CKETDRARCIYKFALDRIPK  161 (365)
Q Consensus        98 ~~~-----~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~  161 (365)
                      ...     |+.++|+..|+++++. .|+ +    ..++..+|.++.   . .|+++++...+++++...|.
T Consensus       210 ~~vPp~~gGd~ekA~~~ferAL~L-nP~~~----id~~v~YA~~l~---~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          210 AAAPESFGGGMEKAHTAFEHLTRY-CSAHD----PDHHITYADALC---IPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHSCTTTTCCHHHHHHHHHHHHHH-CCTTC----SHHHHHHHHHTT---TTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HhCCCccCCCHHHHHHHHHHHHHh-CCCCC----chHHHHHHHHHH---HhcCCHHHHHHHHHHHHcCCCC
Confidence            994     9999999999999999 885 4    889999999998   7 49999999999999998776

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.04  E-value=2.6e-08  Score=87.53  Aligned_cols=148  Identities=14%  Similarity=0.124  Sum_probs=128.6

Q ss_pred             ChhhHHHHHHHHHHh--CCCchHHHHHHHHHHHhcCC---------hhHHHHHHHHHHhh--CCChHHHHHHHHHHHHhc
Q 036703            1 FIDHGRNAWDRVVTL--SPRVDQLWNNYIRMEENLGN---------VAGARQIFERWMHW--MPDHEGWLSYIKFKLRYN   67 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~---------~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~   67 (365)
                      ++++|..+|++..+.  .|+ ...|..+...+...+.         .+.|..+|+++...  .|+..+|..++..+.+.|
T Consensus        41 ~~~~A~~lf~~M~~~Gv~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g  119 (501)
T 4g26_A           41 DVLEALRLYDEARRNGVQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKD  119 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            468899999999876  465 7788888887776543         67899999998864  577889999999999999


Q ss_pred             cHHHHHHHHHHHHHh--CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchh
Q 036703           68 EVQRARHIFERLVQC--HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKET  145 (365)
Q Consensus        68 ~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (365)
                      +.++|..+|+++.+.  .| +..+|..+...+.+.|+.++|.++|+++.+.+...+    ...|..+...+.   +.|+.
T Consensus       120 ~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd----~~ty~~Li~~~~---~~g~~  191 (501)
T 4g26_A          120 DPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE----EPELAALLKVSM---DTKNA  191 (501)
T ss_dssp             CHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC----HHHHHHHHHHHH---HTTCH
T ss_pred             CHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHh---hCCCH
Confidence            999999999999875  46 888999999999999999999999999998755555    889999999999   99999


Q ss_pred             HHHHHHHHHHhc
Q 036703          146 DRARCIYKFALD  157 (365)
Q Consensus       146 ~~A~~~~~~~l~  157 (365)
                      ++|.++|++..+
T Consensus       192 d~A~~ll~~Mr~  203 (501)
T 4g26_A          192 DKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998866

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.04  E-value=6.9e-10  Score=74.91  Aligned_cols=67  Identities=19%  Similarity=0.361  Sum_probs=39.1

Q ss_pred             CCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           50 MPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        50 ~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      +|+ ..+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344 4555566666666666666666666666666655666666666666666666666666666555

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.03  E-value=6.4e-09  Score=90.67  Aligned_cols=128  Identities=11%  Similarity=0.017  Sum_probs=108.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhh-----CCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCcchHH
Q 036703           27 IRMEENLGNVAGARQIFERWMHW-----MPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQC--------HPYNLSA   89 (365)
Q Consensus        27 ~~~~~~~g~~~~A~~~~~~al~~-----~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~   89 (365)
                      +..+..+|++++|+..++++++.     .|+    ..++..++.++..+|++++|..++++++..        +|+....
T Consensus       316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~  395 (490)
T 3n71_A          316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA  395 (490)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            44466899999999999999974     233    467888999999999999999999999974        3445567


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhhh---hcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703           90 WINFADFEMKMGEVDRARNVYECAVEIF---LADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      +..+|.+|..+|++++|+.+|+++++..   .+.+|+....+...++..+.   .++.+++|...|+++.+
T Consensus       396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~---e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEM---ELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999998762   35556888888889999999   99999999999998865

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.03  E-value=2.8e-10  Score=78.46  Aligned_cols=98  Identities=13%  Similarity=0.081  Sum_probs=82.6

Q ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCCh--hhHHHHHH
Q 036703           53 HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDH--DEAEQLFV  130 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~  130 (365)
                      ...|..+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++. .|.+.  .....++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-TSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCccHHHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999999 87641  11256777


Q ss_pred             HHHHHHHhccccchhHHHHHHHHH
Q 036703          131 AFAKFEEMGCNCKETDRARCIYKF  154 (365)
Q Consensus       131 ~~~~~~~~~~~~~~~~~A~~~~~~  154 (365)
                      .++.++.   ..|+++.|+..+++
T Consensus        83 ~~~~~~~---~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQG---AVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHH---HHHCCCCCSSSSSS
T ss_pred             HHHHHHH---HHHhHhhhHhHHHH
Confidence            8888888   77877777665544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.91  E-value=1.5e-08  Score=83.40  Aligned_cols=118  Identities=8%  Similarity=0.010  Sum_probs=91.1

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhc---C-Ch----hHHHHHHHHH--HhhCCC-hHHHHHHHHHHHHhccHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENL---G-NV----AGARQIFERW--MHWMPD-HEGWLSYIKFKLRYNEVQ   70 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~---g-~~----~~A~~~~~~a--l~~~p~-~~~~~~~~~~~~~~~~~~   70 (365)
                      +.+|+.+|+++++++|+++.+|..++.++...   + ..    ......++.+  +...|. +.++..++......|+++
T Consensus       215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d  294 (372)
T 3ly7_A          215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD  294 (372)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHH
Confidence            46899999999999999988888777666421   1 11    1111222222  134455 677888888888889999


Q ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           71 RARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        71 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      .|...+++++..+| +...|..+|.++...|++++|.+.|++|+.. .|..
T Consensus       295 ~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL-~P~~  343 (372)
T 3ly7_A          295 ESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL-RPGA  343 (372)
T ss_dssp             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SCSH
T ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCc
Confidence            99999999999998 6778889999999999999999999999999 8874

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.90  E-value=3.1e-08  Score=86.36  Aligned_cols=133  Identities=9%  Similarity=-0.021  Sum_probs=104.3

Q ss_pred             HHHHHhCCHHHHHHHHHHHHhc-----CCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccc-cCCCcc
Q 036703          215 RLEERVGNQERVREVYERAIAN-----VPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYF-SFSPRM  288 (365)
Q Consensus       215 ~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~  288 (365)
                      ..+..+|++++|+.+++++++.     -|+++..      ...+.+++..+ ..+|++++|+.++++++.... ..+...
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~------a~~~~nLa~~y-~~~g~~~eA~~~~~~aL~i~~~~lG~~H  389 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYV------LRLLSIASEVL-SYLQAYEEASHYARRMVDGYMKLYHHNN  389 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHH------HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            3456789999999999999975     3444432      45778888888 699999999999999998721 111111


Q ss_pred             hh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh-----Ccch---HHHHHHHHHHHhhccchhHHHHHHHHHhcC
Q 036703          289 EE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW-----SPEN---CYAWSKYTELEKSLDETERARAIFELAIAQ  354 (365)
Q Consensus       289 ~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  354 (365)
                      |+ ...+.++|.++...|++++|..+|++|+.+     .|++   .++...++..+..+|.+++|..+|.++.+.
T Consensus       390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55 677899999999999999999999999975     4554   456678888899999999999999888653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.90  E-value=5.5e-09  Score=70.23  Aligned_cols=90  Identities=21%  Similarity=0.257  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCcchH-HHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 036703           57 LSYIKFKLRYNEVQRARHIFERLVQCHPYNLS-AWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF  135 (365)
Q Consensus        57 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  135 (365)
                      +..+..+...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..|+++++. .|.+    ..++..    
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~----   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-NPDS----PALQAR----   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTS----THHHHH----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCc----HHHHHH----
Confidence            45678888999999999999999999999999 9999999999999999999999999999 8887    555521    


Q ss_pred             HHhccccchhHHHHHHHHHHhccCCCc
Q 036703          136 EEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       136 ~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                             +.+.++...|++++...|++
T Consensus        75 -------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 -------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             -------HHHHHHHHHHCCTTHHHHCC
T ss_pred             -------HHHHHHHHHHHHHhccCccc
Confidence                   34566777777777665553

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.89  E-value=1.3e-07  Score=77.96  Aligned_cols=145  Identities=11%  Similarity=0.068  Sum_probs=108.5

Q ss_pred             HHHHHHhCCCchHHHHHHH--HHHHhcCC---hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHH---hc-----cHHHHHH
Q 036703            9 WDRVVTLSPRVDQLWNNYI--RMEENLGN---VAGARQIFERWMHWMPD-HEGWLSYIKFKLR---YN-----EVQRARH   74 (365)
Q Consensus         9 ~~~~l~~~p~~~~~~~~~~--~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~---~~-----~~~~A~~   74 (365)
                      .+++...-|.+..+|-.+.  ..+...++   ..+|+.+|+++++.+|+ ..+|-.++.++..   .+     .......
T Consensus       183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~  262 (372)
T 3ly7_A          183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT  262 (372)
T ss_dssp             HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence            3455666788888876543  44444444   47899999999999999 5555554444421   11     1112222


Q ss_pred             HHHH--HHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHH
Q 036703           75 IFER--LVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIY  152 (365)
Q Consensus        75 ~~~~--~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  152 (365)
                      .++.  ++...|.++.++..++..+...|++++|+..+++++.. .|+     ...|..+|.++.   ..|++++|.+.|
T Consensus       263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n~s-----~~a~~llG~~~~---~~G~~~eA~e~~  333 (372)
T 3ly7_A          263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-EMS-----WLNYVLLGKVYE---MKGMNREAADAY  333 (372)
T ss_dssp             HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCC-----HHHHHHHHHHHH---HTTCHHHHHHHH
T ss_pred             HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCC-----HHHHHHHHHHHH---HCCCHHHHHHHH
Confidence            2222  23467889999999999888899999999999999999 753     778889999999   999999999999


Q ss_pred             HHHhccCCCc
Q 036703          153 KFALDRIPKG  162 (365)
Q Consensus       153 ~~~l~~~p~~  162 (365)
                      ++|+...|..
T Consensus       334 ~~AlrL~P~~  343 (372)
T 3ly7_A          334 LTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHSCSH
T ss_pred             HHHHhcCCCc
Confidence            9999999986

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.89  E-value=6.9e-08  Score=69.20  Aligned_cols=109  Identities=8%  Similarity=0.032  Sum_probs=96.4

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHH----hccHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR----YNEVQRARHIF   76 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A~~~~   76 (365)
                      ++++|+..|+++.+..+.  .+.  +|.++...+.+++|+..|+++.+. .++.++..++.++..    .+++++|...|
T Consensus        10 d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~   84 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYY   84 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            468899999999988633  344  999999999999999999999986 347888999999988    78999999999


Q ss_pred             HHHHHhCCcchHHHHHHHHHHHh----hcchHHHHHHHHHHHhh
Q 036703           77 ERLVQCHPYNLSAWINFADFEMK----MGEVDRARNVYECAVEI  116 (365)
Q Consensus        77 ~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~  116 (365)
                      +++.+.  .++.....++.+|..    .+++++|+..|+++.+.
T Consensus        85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            999887  579999999999999    89999999999999987

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.82  E-value=5.4e-08  Score=64.02  Aligned_cols=70  Identities=9%  Similarity=-0.038  Sum_probs=56.6

Q ss_pred             CCCchHHHHHHHHHHHhcCC---hhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703           16 SPRVDQLWNNYIRMEENLGN---VAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY   85 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~   85 (365)
                      +|+++.++..+|.++...++   .++|...++++++.+|+ +.++..+|..+...|++++|+..++++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57788888888888865554   67888888888888888 778888888888888888888888888888885

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.78  E-value=4.8e-08  Score=64.28  Aligned_cols=71  Identities=15%  Similarity=-0.016  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHHHHHhCC---CccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCc
Q 036703          290 ERRIFKKYIEMELCLGN---IDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPE  361 (365)
Q Consensus       290 ~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~  361 (365)
                      +++++..+|.++...++   .++|..+++++++.+|+++.++..+|..+...|++++|+..++++++.+|. .|.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~   78 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD   78 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence            38899999999875544   799999999999999999999999999999999999999999999999995 543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.76  E-value=1.7e-07  Score=67.18  Aligned_cols=112  Identities=8%  Similarity=-0.047  Sum_probs=95.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHH
Q 036703          221 GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEM  300 (365)
Q Consensus       221 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  300 (365)
                      +++++|...|+++.+..+..           ..  ++.++ ...+.+++|+..|+++.+.        .++.....++.+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~-----------a~--lg~~y-~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~   66 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMF-----------GC--LSLVS-NSQINKQKLFQYLSKACEL--------NSGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT-----------HH--HHHHT-CTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHh-----------hh--HHHHH-HcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence            46889999999999886443           22  67776 4667888999999999987        446778899999


Q ss_pred             HHH----hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh----ccchhHHHHHHHHHhcCcC
Q 036703          301 ELC----LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS----LDETERARAIFELAIAQPI  356 (365)
Q Consensus       301 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~  356 (365)
                      +..    .+++++|..+|+++.+.  .++..+..++.++..    .++.++|...|+++.+...
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            988    89999999999999987  578999999999999    8999999999999998753

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.71  E-value=2.8e-07  Score=65.57  Aligned_cols=90  Identities=11%  Similarity=-0.008  Sum_probs=70.9

Q ss_pred             hhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC---ChhHHHHHHHHHHhhC-CC--hHHHHHHHHHHHHhccHHHHHHHH
Q 036703            3 DHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG---NVAGARQIFERWMHWM-PD--HEGWLSYIKFKLRYNEVQRARHIF   76 (365)
Q Consensus         3 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~-p~--~~~~~~~~~~~~~~~~~~~A~~~~   76 (365)
                      ..++..|.+.+...|.+.++.+.||.++.+.+   ++++++..++..++.+ |+  .+.++.++-.+.+.|++++|+..+
T Consensus        15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            45677788888777777888888888888877   5568888888888877 63  577788888888888888888888


Q ss_pred             HHHHHhCCcchHHHHH
Q 036703           77 ERLVQCHPYNLSAWIN   92 (365)
Q Consensus        77 ~~~l~~~p~~~~~~~~   92 (365)
                      +++++..|++..+...
T Consensus        95 ~~lL~ieP~n~QA~~L  110 (152)
T 1pc2_A           95 RGLLQTEPQNNQAKEL  110 (152)
T ss_dssp             HHHHHHCTTCHHHHHH
T ss_pred             HHHHhcCCCCHHHHHH
Confidence            8888888877666543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.60  E-value=6.3e-07  Score=63.74  Aligned_cols=91  Identities=12%  Similarity=0.076  Sum_probs=74.4

Q ss_pred             ccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc---chHHHHHHHHHHHhhhh-cCChhhHHHHHHHHHHHHHhcccc
Q 036703           67 NEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG---EVDRARNVYECAVEIFL-ADDHDEAEQLFVAFAKFEEMGCNC  142 (365)
Q Consensus        67 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  142 (365)
                      +....++..|.+.+..+|.+.++.+.+|.++.+.+   +.++++.+++..++. . |.   ...+.++.+|..+.   +.
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~~p~---~~rd~lY~LAv~~~---kl   84 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-GSKE---EQRDYVFYLAVGNY---RL   84 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SCHH---HHHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCcc---chHHHHHHHHHHHH---Hc
Confidence            35667788888888888888899999999998877   667899999998888 6 41   23778888888888   89


Q ss_pred             chhHHHHHHHHHHhccCCCchh
Q 036703          143 KETDRARCIYKFALDRIPKGRA  164 (365)
Q Consensus       143 ~~~~~A~~~~~~~l~~~p~~~~  164 (365)
                      |++++|+++++++++..|.+..
T Consensus        85 ~~Y~~A~~y~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           85 KEYEKALKYVRGLLQTEPQNNQ  106 (152)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHH
Confidence            9999999999999999998753

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.53  E-value=4.1e-07  Score=78.04  Aligned_cols=91  Identities=9%  Similarity=0.022  Sum_probs=78.8

Q ss_pred             HhccHHHHHHHHHHHHHh-----CCc---chHHHHHHHHHHHhhcchHHHHHHHHHHHhhh---hcCChhhHHHHHHHHH
Q 036703           65 RYNEVQRARHIFERLVQC-----HPY---NLSAWINFADFEMKMGEVDRARNVYECAVEIF---LADDHDEAEQLFVAFA  133 (365)
Q Consensus        65 ~~~~~~~A~~~~~~~l~~-----~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~  133 (365)
                      ..|++++|..+++++++.     .|+   -..++..+|.+|..+|++++|+.++++++...   .|.+|++....+.++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457899999999999984     343   45668889999999999999999999998752   4666788899999999


Q ss_pred             HHHHhccccchhHHHHHHHHHHhcc
Q 036703          134 KFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus       134 ~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      .+|.   .+|++++|+.+|++++++
T Consensus       390 ~~~~---~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          390 RLYM---GLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHH---HTTCHHHHHHHHHHHHHH
T ss_pred             HHHH---hccCHHHHHHHHHHHHHH
Confidence            9999   999999999999999874

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.42  E-value=7.1e-06  Score=70.53  Aligned_cols=110  Identities=10%  Similarity=0.054  Sum_probs=86.1

Q ss_pred             HHHHhcCChhHHHHHHHHHHhhC-----CC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCcchHHH
Q 036703           28 RMEENLGNVAGARQIFERWMHWM-----PD----HEGWLSYIKFKLRYNEVQRARHIFERLVQC--------HPYNLSAW   90 (365)
Q Consensus        28 ~~~~~~g~~~~A~~~~~~al~~~-----p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~   90 (365)
                      .-+..+|++++|+..++++++..     |+    ..++..++.++..+|++++|+.++++++..        +|+-...+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            34557899999999999999753     33    457788999999999999999999999974        34445678


Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhh---hcCChhhHHHHHHHHHHHHH
Q 036703           91 INFADFEMKMGEVDRARNVYECAVEIF---LADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~  137 (365)
                      ..+|.+|..+|++++|+.+|+++++..   .+.+|+....+...++....
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            899999999999999999999998862   24444555666665655543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.41  E-value=1.2e-06  Score=75.25  Aligned_cols=93  Identities=14%  Similarity=0.060  Sum_probs=76.0

Q ss_pred             ccCChhHHHHHHHHHHhcccc-CCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhh--------CcchHHHHHHHH
Q 036703          263 DAGDLERTRDVYRTLFIFYFS-FSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEW--------SPENCYAWSKYT  332 (365)
Q Consensus       263 ~~~~~~~a~~~~~~a~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~  332 (365)
                      ..|++++|+.++++++..... .+.-.|+ ...+..++.+|...|++++|..++++++..        +|+-...++++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            568999999999999987211 1111144 677889999999999999999999999976        344556788999


Q ss_pred             HHHhhccchhHHHHHHHHHhcCc
Q 036703          333 ELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      .++..+|++++|..+|++|++..
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHH
Confidence            99999999999999999998754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.35  E-value=2.7e-06  Score=73.16  Aligned_cols=93  Identities=13%  Similarity=0.081  Sum_probs=80.2

Q ss_pred             HHHhccHHHHHHHHHHHHHh--------CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh---hhcCChhhHHHHHHH
Q 036703           63 KLRYNEVQRARHIFERLVQC--------HPYNLSAWINFADFEMKMGEVDRARNVYECAVEI---FLADDHDEAEQLFVA  131 (365)
Q Consensus        63 ~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~  131 (365)
                      +..+|++++|+..++++++.        +|....++..++.+|..+|++++|+.++++++..   ..|.+|+.....+.+
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            44678999999999999974        3334567888999999999999999999999875   156667888999999


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHhcc
Q 036703          132 FAKFEEMGCNCKETDRARCIYKFALDR  158 (365)
Q Consensus       132 ~~~~~~~~~~~~~~~~A~~~~~~~l~~  158 (365)
                      +|.+|.   .+|++++|+.+|++++++
T Consensus       377 La~~~~---~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          377 VGKLQL---HQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHH---HTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHH---hcCCHHHHHHHHHHHHHH
Confidence            999999   999999999999999864

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.34  E-value=5.5e-06  Score=55.85  Aligned_cols=75  Identities=9%  Similarity=-0.019  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhC-------CC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWM-------PD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI   91 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   91 (365)
                      +.-.+.+|..+...|++..|+..|+.|++..       +. ..++..++.++.+.|+++.|...++++++..|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4556788999999999999999999998753       12 567888899999999999999999999999998887766


Q ss_pred             HHH
Q 036703           92 NFA   94 (365)
Q Consensus        92 ~~~   94 (365)
                      .+.
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.20  E-value=2e-05  Score=53.00  Aligned_cols=75  Identities=11%  Similarity=0.046  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCH-------PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAE  126 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  126 (365)
                      .-.+.+|..+...|++..|...|+++++..       +..+.++..+|.++.+.|+++.|+..++++++. .|.+    .
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-~P~~----~   80 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-DPEH----Q   80 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----H
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCC----H
Confidence            345688999999999999999999999863       346789999999999999999999999999999 9988    7


Q ss_pred             HHHHHHH
Q 036703          127 QLFVAFA  133 (365)
Q Consensus       127 ~~~~~~~  133 (365)
                      .+..++.
T Consensus        81 ~~~~n~~   87 (104)
T 2v5f_A           81 RANGNLK   87 (104)
T ss_dssp             HHHHHHH
T ss_pred             HHHhhHH
Confidence            7766665

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.06  E-value=0.00011  Score=50.28  Aligned_cols=88  Identities=11%  Similarity=-0.007  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhH---HHHHHHHHHhhC-CC--hHHHHHHHHHHHHhccHHHHHHHHH
Q 036703            4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAG---ARQIFERWMHWM-PD--HEGWLSYIKFKLRYNEVQRARHIFE   77 (365)
Q Consensus         4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~---A~~~~~~al~~~-p~--~~~~~~~~~~~~~~~~~~~A~~~~~   77 (365)
                      .++..|.+.+...+.+.++-+.||..+.+..+...   ++.+++..++.. |.  ....+.++-.+.+.|+|++|+..++
T Consensus        19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~   98 (126)
T 1nzn_A           19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   98 (126)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            45555666666555556666777766666665544   666666666655 43  3455556666666777777777777


Q ss_pred             HHHHhCCcchHHHH
Q 036703           78 RLVQCHPYNLSAWI   91 (365)
Q Consensus        78 ~~l~~~p~~~~~~~   91 (365)
                      .+++..|++..+..
T Consensus        99 ~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           99 GLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHCTTCHHHHH
T ss_pred             HHHHhCCCCHHHHH
Confidence            77777776655543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.04  E-value=0.00013  Score=49.83  Aligned_cols=96  Identities=13%  Similarity=0.048  Sum_probs=76.5

Q ss_pred             HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHH---HHHHHHHHHhhhh-cCChhhHHHHHHHHHHHHHhc
Q 036703           64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDR---ARNVYECAVEIFL-ADDHDEAEQLFVAFAKFEEMG  139 (365)
Q Consensus        64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~---A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~  139 (365)
                      ........++..|.+.+..++.+..+-+.+|..+.+..+...   ++.+++..++. . |.   ......+.+|..+.  
T Consensus        12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~~p~---~~Rd~lY~LAvg~y--   85 (126)
T 1nzn_A           12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKE---EQRDYVFYLAVGNY--   85 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHH---HHHHHHHHHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCcc---hHHHHHHHHHHHHH--
Confidence            344566778888888888777789999999999998775554   88888888877 5 31   24777888888888  


Q ss_pred             cccchhHHHHHHHHHHhccCCCchhHH
Q 036703          140 CNCKETDRARCIYKFALDRIPKGRAED  166 (365)
Q Consensus       140 ~~~~~~~~A~~~~~~~l~~~p~~~~~~  166 (365)
                       +.|+|++|+..++.+++..|.+..+.
T Consensus        86 -klg~Y~~A~~~~~~lL~~eP~n~QA~  111 (126)
T 1nzn_A           86 -RLKEYEKALKYVRGLLQTEPQNNQAK  111 (126)
T ss_dssp             -HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             -HhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence             99999999999999999999875433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.82  E-value=0.0083  Score=50.42  Aligned_cols=180  Identities=9%  Similarity=-0.007  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHhcc---CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703          126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDR---IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRK  202 (365)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~  202 (365)
                      ......+|..|.   ..|+.++..+++......   .|......+...+++......+..+       .-..+...+++-
T Consensus        19 e~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~-------~~~~~~~~~~~~   88 (394)
T 3txn_A           19 EQGILQQGELYK---QEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTG-------IEVQLCKDCIEW   88 (394)
T ss_dssp             HHHHHHHHHHHH---HHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHH
Confidence            567888999999   999999999999876553   3444445666666666554443322       222333333332


Q ss_pred             CCCCHHHH------HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHH
Q 036703          203 NPMNYDTW------FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRT  276 (365)
Q Consensus       203 ~p~~~~~~------~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  276 (365)
                      ..+.-..|      ..++.++...|++.+|.+++.+..+.+....+.   ...+.++..-++++ ...+++.++...+.+
T Consensus        89 a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~---~~llev~lle~~~~-~~~~n~~k~k~~l~~  164 (394)
T 3txn_A           89 AKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK---NLLVEVQLLESKTY-HALSNLPKARAALTS  164 (394)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT---HHHHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc---hhHHHHHHHHHHHH-HHhccHHHHHHHHHH
Confidence            11222233      378999999999999999999988764331111   12356777777777 688999999999999


Q ss_pred             HHhccccCCCcchh--HHHHHHHHHHHH-HhCCCccHHHHHHHHHhh
Q 036703          277 LFIFYFSFSPRMEE--RRIFKKYIEMEL-CLGNIDPCRKLYEKYLEW  320 (365)
Q Consensus       277 a~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~  320 (365)
                      +.........- |.  ..+...-|.+++ ..++|..|...|-.+++.
T Consensus       165 a~~~~~ai~~~-p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          165 ARTTANAIYCP-PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHhhhccCCCC-HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            98764222110 44  566777778888 899999999999998754

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=97.73  E-value=0.00024  Score=66.16  Aligned_cols=101  Identities=7%  Similarity=-0.053  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHh-----hCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCcchHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMH-----WMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQC--HPYNLSAWIN   92 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~   92 (365)
                      ...+..+...+.+.|++++|..+|.++.+     ..|+..+|..++..+.+.|+.++|..+|+++.+.  .| |..+|..
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYnt  205 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence            34588999999999999999999977643     5788999999999999999999999999999874  56 8899999


Q ss_pred             HHHHHHhhcch-HHHHHHHHHHHhhhhcCC
Q 036703           93 FADFEMKMGEV-DRARNVYECAVEIFLADD  121 (365)
Q Consensus        93 ~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~  121 (365)
                      +...+.+.|+. ++|.++|+++.+.+...+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD  235 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQ  235 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCC
Confidence            99999999985 789999999999844433

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.0066  Score=45.12  Aligned_cols=140  Identities=14%  Similarity=0.197  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHc---CCCC-HHHHHHHHHHHHHh---CCH---HHHH-HHHHHHHhcCCCchhhhHHHHhHHHHHHHHHH
Q 036703          191 KMRLQYEDGVRK---NPMN-YDTWFDYIRLEERV---GNQ---ERVR-EVYERAIANVPPAEEKRYWQRYIYLWINYALY  259 (365)
Q Consensus       191 ~a~~~~~~~l~~---~p~~-~~~~~~~~~~~~~~---~~~---~~A~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  259 (365)
                      ..+..|++.+..   ..++ .++|..++......   |..   ..-. .++++++....++..-+-=.+|+.+|+.|+.+
T Consensus        10 ~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~   89 (202)
T 3esl_A           10 QTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINL   89 (202)
T ss_dssp             HHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh
Confidence            566777777765   3334 47899888764322   332   2344 78999998755443222223578899999987


Q ss_pred             HhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcc-hHHHHHHHHHHHh
Q 036703          260 KEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPE-NCYAWSKYTELEK  336 (365)
Q Consensus       260 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~  336 (365)
                      .  ..+....+..+|.-+.......    .-..+|..+|..+...|++.+|.++|+.+++..-. ...+...+..+..
T Consensus        90 ~--~~~~~~~p~~if~~L~~~~IG~----~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~  161 (202)
T 3esl_A           90 F--LSNNFHESENTFKYMFNKGIGT----KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYED  161 (202)
T ss_dssp             H--STTCHHHHHHHHHHHHHHTSST----TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHH
T ss_pred             h--cccccCCHHHHHHHHHHCCCcH----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence            4  4566778999998887764321    22778999999999999999999999999987532 2233334444443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=97.40  E-value=0.0017  Score=60.72  Aligned_cols=97  Identities=11%  Similarity=-0.003  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHH-----hCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQ-----CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQL  128 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  128 (365)
                      ..+..+++.+.+.|+.++|..+|.++..     ..| +..+|..+...+.+.|+.++|.++|+++.+.+...+    ...
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD----vvT  202 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD----LLS  202 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC----HHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc----HHH
Confidence            4688999999999999999999977543     356 899999999999999999999999999998866666    888


Q ss_pred             HHHHHHHHHhccccchh-HHHHHHHHHHhcc
Q 036703          129 FVAFAKFEEMGCNCKET-DRARCIYKFALDR  158 (365)
Q Consensus       129 ~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~  158 (365)
                      |..+...+.   +.|+. ++|.++|+++.+.
T Consensus       203 YntLI~glc---K~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          203 YAAALQCMG---RQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHH---HHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---hCCCcHHHHHHHHHHHHHc
Confidence            888888888   88874 7899999988764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.37  E-value=0.0052  Score=42.17  Aligned_cols=89  Identities=7%  Similarity=-0.077  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc---chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchh
Q 036703           69 VQRARHIFERLVQCHPYNLSAWINFADFEMKMG---EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKET  145 (365)
Q Consensus        69 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (365)
                      ....++.|.+=+.-.| ++.+-+.+|-.+.+..   +..+++.+++..++. .|..   ....++.+|..+.   +.|++
T Consensus        23 L~~l~~qy~~E~~~~v-s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~---~Rd~LYyLAvg~y---klgdY   94 (134)
T 3o48_A           23 LEILRQQVVSEGGPTA-TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESR---RRECLYYLTIGCY---KLGEY   94 (134)
T ss_dssp             HHHHHHHHHHTTGGGS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGG---HHHHHHHHHHHHH---HHTCH
T ss_pred             HHHHHHHHHHHhCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-Ccch---hHHHHHHHHHHHH---HhhhH
Confidence            3344444444223334 6777888887777755   445788888888877 6532   4667777787788   88888


Q ss_pred             HHHHHHHHHHhccCCCchhH
Q 036703          146 DRARCIYKFALDRIPKGRAE  165 (365)
Q Consensus       146 ~~A~~~~~~~l~~~p~~~~~  165 (365)
                      ++|+++.+.+++..|.+..+
T Consensus        95 ~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           95 SMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             HHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHH
Confidence            88888888888888887543

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=97.36  E-value=0.0055  Score=43.40  Aligned_cols=119  Identities=13%  Similarity=0.163  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhc--cCChhHHHHHHHHHHhccccCCCcc--hh-HHHHHHH
Q 036703          223 QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVD--AGDLERTRDVYRTLFIFYFSFSPRM--EE-RRIFKKY  297 (365)
Q Consensus       223 ~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~--~~-~~~~~~~  297 (365)
                      ...++..|+..+.....++.       +.+|..|..+.+..  .|. ..-..+++++++...+...--  |. ..+|..+
T Consensus         6 ~~~~~~~fE~~i~~y~gdDP-------L~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~y   77 (152)
T 4a1g_A            6 PENVLQMLEAHMQSYKGNDP-------LGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKF   77 (152)
T ss_dssp             HHHHHHHHHHHTTSCCSSCH-------HHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence            45577788888887433322       66899998886421  132 345678888887743221110  22 5667777


Q ss_pred             HHHHHHhCCCccHHHHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          298 IEMELCLGNIDPCRKLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       298 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      +++      .+++..+|..+...  .-....+|..+|.++...|++.+|..+|+.+++..
T Consensus        78 a~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~  131 (152)
T 4a1g_A           78 AEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ  131 (152)
T ss_dssp             HTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            654      46699999998765  45688999999999999999999999999999875

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.36  E-value=0.0032  Score=45.13  Aligned_cols=113  Identities=14%  Similarity=0.040  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCcch---------HHHHHHHHHHHhhcchHHHHHHHHHHHhhh--hcCC---
Q 036703           56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNL---------SAWINFADFEMKMGEVDRARNVYECAVEIF--LADD---  121 (365)
Q Consensus        56 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~---  121 (365)
                      ....++.....|.++.|+.+...++....+++         .+...+|+.+...|++.+|...|+++++..  .+..   
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            34445556667777777777776665433222         256677777777777777777777776541  0110   


Q ss_pred             ---------------hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703          122 ---------------HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF  174 (365)
Q Consensus       122 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  174 (365)
                                     .....++-+..+.++.   ..+++++|+.+++..-..   .....+-..++.+
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~---~l~~~~~Ai~~Le~Ip~k---~Rt~kvnm~LakL  164 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYT---VLKQDKDAIAILDGIPSR---QRTPKINMLLANL  164 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHH---HTTCHHHHHHHHHTSCGG---GCCHHHHHHHHHH
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHH---HHCCHHHHHHHHhcCCch---hcCHHHHHHHHHH
Confidence                           0011367788999999   999999999998764221   1124455555544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.34  E-value=0.0032  Score=45.14  Aligned_cols=109  Identities=9%  Similarity=0.038  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhh---CCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CC--
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHW---MPD-------HEGWLSYIKFKLRYNEVQRARHIFERLVQC------HP--   84 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~p--   84 (365)
                      ++.-+.-....|.++.|+-+...++..   +|+       ..+...+|+.+...++|.+|...|+++++.      .|  
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            445566677788888888877776643   333       235677788888888888888888887652      11  


Q ss_pred             -----------------cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           85 -----------------YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        85 -----------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                                       .+.++-+.++.|+.+.|++++|+..++.+-..      ..++.+-..+|++|.
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k------~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR------QRTPKINMLLANLYK  166 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG------GCCHHHHHHHHHHCC
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch------hcCHHHHHHHHHHhc
Confidence                             12368889999999999999999998765333      223778888887653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.0045  Score=56.58  Aligned_cols=123  Identities=11%  Similarity=0.020  Sum_probs=89.5

Q ss_pred             HHHHHHHhcCC-hhHHHHHHHHHHhhCCChHHHHHHH--HHHHHhc-cHHHHHHHHHHHHHh--------C---------
Q 036703           25 NYIRMEENLGN-VAGARQIFERWMHWMPDHEGWLSYI--KFKLRYN-EVQRARHIFERLVQC--------H---------   83 (365)
Q Consensus        25 ~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~~-~~~~A~~~~~~~l~~--------~---------   83 (365)
                      .+..+....|+ ++.|+..|++....+|........+  .+....+ +--+|.+++.+.++.        .         
T Consensus       253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~  332 (754)
T 4gns_B          253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARL  332 (754)
T ss_dssp             HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccc
Confidence            34444445566 5789999999999999844433322  2222222 334577777776642        1         


Q ss_pred             -CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703           84 -PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA  155 (365)
Q Consensus        84 -p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  155 (365)
                       |....+...-++++...|+++-|+++-++++.. .|.+    ...|..++.+|.   ..|+++.|+-.+..+
T Consensus       333 ~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPse----F~tW~~La~vYi---~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          333 MNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDS----FESWYNLARCHI---KKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSC----HHHHHHHHHHHH---HTTCHHHHHHHHHHS
T ss_pred             cCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-Cchh----hHHHHHHHHHHH---HhccHHHHHHHHhcC
Confidence             112335555678888999999999999999999 9999    999999999999   999999999888765

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.29  E-value=0.0077  Score=41.92  Aligned_cols=78  Identities=6%  Similarity=-0.046  Sum_probs=57.9

Q ss_pred             chHHHHHHHHHHHhhc---chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703           86 NLSAWINFADFEMKMG---EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      ++.+-+.+|-.+.+..   +..+++.+++..++. .|..   .....+.+|..+.   +.|+|++|+++.+.+++..|.+
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~---~RdcLYyLAvg~y---kl~~Y~~Ar~y~d~lL~~eP~n  110 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESR---RRECLYYLTIGCY---KLGEYSMAKRYVDTLFEHERNN  110 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCST---HHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHTCCCC
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-Cccc---hhHHHHHHHHHHH---HhhhHHHHHHHHHHHHhcCCCc
Confidence            7788888888887765   445788888888877 6643   3666777777788   8888999999888888888887


Q ss_pred             hhHHHHHH
Q 036703          163 RAEDLYRK  170 (365)
Q Consensus       163 ~~~~~~~~  170 (365)
                      ..+.-...
T Consensus       111 ~QA~~Lk~  118 (144)
T 1y8m_A          111 KQVGALKS  118 (144)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54433333

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.0054  Score=56.07  Aligned_cols=129  Identities=8%  Similarity=-0.022  Sum_probs=88.4

Q ss_pred             HHHHHhCC-HHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc--------ccCC
Q 036703          215 RLEERVGN-QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY--------FSFS  285 (365)
Q Consensus       215 ~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~  285 (365)
                      .+....|+ .+.|+.++++..+..|....        .+...+....+....+--+|+.++.++++..        +...
T Consensus       256 ~~~~~t~~~~~~a~~~le~L~~~~p~~~~--------~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~  327 (754)
T 4gns_B          256 SFIAITPSLVDFTIDYLKGLTKKDPIHDI--------YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA  327 (754)
T ss_dssp             HHHHTCGGGHHHHHHHHHHHHHHCGGGHH--------HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHcccccHHHHHHHHHHHHHhhCCchhH--------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence            33334555 57899999999999887531        1222222222222234456777777766421        0000


Q ss_pred             ---Ccch-hHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHH
Q 036703          286 ---PRME-ERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA  351 (365)
Q Consensus       286 ---~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  351 (365)
                         ...| ...+...-++++...|+++-|.++-++|+...|.....|..++.+|...|+++.|.-.+..+
T Consensus       328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence               0001 13456666888889999999999999999999999999999999999999999998776655

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.25  E-value=0.0076  Score=41.38  Aligned_cols=70  Identities=14%  Similarity=-0.022  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHHhcCCh---hHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHH
Q 036703           20 DQLWNNYIRMEENLGNV---AGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSA   89 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~---~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   89 (365)
                      +.+-+.+|..+.+..+.   ..++.+++..++..|.  .+.+..++-.+.+.|++++|+...+.+++..|++..+
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            44555555555544432   2455555555555553  3445555555555555555555555555555555443

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=97.25  E-value=0.011  Score=41.89  Aligned_cols=34  Identities=0%  Similarity=0.132  Sum_probs=25.4

Q ss_pred             hHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHc
Q 036703          145 TDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY  178 (365)
Q Consensus       145 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  178 (365)
                      ...++..|+..|.....++...+|..|+......
T Consensus         6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~   39 (152)
T 4a1g_A            6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEEN   39 (152)
T ss_dssp             HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            4456677888888766666688999999877654

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.0096  Score=44.27  Aligned_cols=124  Identities=12%  Similarity=0.223  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHhc---CCCchhhhHHHHhHHHHHHHHHHHhhc--cCCh---hHHH-HHHHHHHhccccCCCcc--hh-
Q 036703          223 QERVREVYERAIAN---VPPAEEKRYWQRYIYLWINYALYKEVD--AGDL---ERTR-DVYRTLFIFYFSFSPRM--EE-  290 (365)
Q Consensus       223 ~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~a~-~~~~~a~~~~~~~~~~~--~~-  290 (365)
                      ....+..|++.+..   ..++|        +.+|..|..|.+..  .|..   ..-. .+++++++...+...--  |. 
T Consensus         8 l~~~r~~fE~~l~~~l~~~dDP--------L~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RY   79 (202)
T 3esl_A            8 LNQTKIAYEQRLLNDLEDMDDP--------LDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRF   79 (202)
T ss_dssp             HHHHHHHHHHHHHHTGGGCSCH--------HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHH
T ss_pred             HHHHHHHHHHHHHhccccCCCc--------hHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHH
Confidence            45567778887776   34444        56888888876411  1222   1234 68889888643321110  33 


Q ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          291 RRIFKKYIEMELCLGNIDPCRKLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      ..+|..++++. ..++..++..+|..+...  .-....+|..+|.++...|++.+|..+|+.+++..
T Consensus        80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~  145 (202)
T 3esl_A           80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN  145 (202)
T ss_dssp             HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            57788888765 234466899999988765  45688999999999999999999999999999876

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.12  E-value=0.016  Score=40.36  Aligned_cols=69  Identities=14%  Similarity=-0.022  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHHhcCCh---hHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH
Q 036703           20 DQLWNNYIRMEENLGNV---AGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS   88 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~---~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~   88 (365)
                      .++-+.||.++.+..+.   .+++.+++..++..|.  .+..+.++-.+.+.|+|++|+.+.+.+++..|++..
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            44444444444444322   2344455554444443  233344444444455555555555555555554433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.08  E-value=0.1  Score=43.84  Aligned_cols=171  Identities=8%  Similarity=-0.038  Sum_probs=115.9

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCcchHHH--
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLR-YNEVQRARHIFERLVQCHPYNLSAW--   90 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~--   90 (365)
                      ..+...+|.++...|+.++..+++.......+.      ..+-..+.+.... .+..+.-.++...+++-....-..|  
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788999999999999999988877654443      2333444444433 2445556666666666433333334  


Q ss_pred             ----HHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc-----C
Q 036703           91 ----INFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR-----I  159 (365)
Q Consensus        91 ----~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~  159 (365)
                          ..+|.+|...|++.+|.+++.+..+. ....  .....+++..-.+++.   ..+++.++...+.++...     .
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~-~~~~dd~~~llev~lle~~~~~---~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRE-LKKLDDKNLLVEVQLLESKTYH---ALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSSCTHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhccccchhHHHHHHHHHHHHH---HhccHHHHHHHHHHHHhhhccCCC
Confidence                37899999999999999999999887 5441  2334566777778888   999999999999888653     2


Q ss_pred             CCchhHHHHHHHHHHHH-HcCCchhhhHHHHHHHHHHHHHHHHc
Q 036703          160 PKGRAEDLYRKFLAFEK-QYGDREGIEDAIAGKMRLQYEDGVRK  202 (365)
Q Consensus       160 p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~l~~  202 (365)
                      |+.....+...-+.++. ..+++.        .|...|-.++..
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk--------~A~~~F~eaf~~  210 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFK--------TAFSYFYEAFEG  210 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHH--------HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHH--------HHHHHHHHHHhc
Confidence            22223445555566676 677765        466666555543

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=96.95  E-value=0.016  Score=41.66  Aligned_cols=114  Identities=13%  Similarity=0.137  Sum_probs=77.3

Q ss_pred             HHHHHHHhcC-CCchhhhHHHHhHHHHHHHHHHHhhc--cCCh-hHHHHHHHHHHhccccCCCcc--hh-HHHHHHHHHH
Q 036703          228 EVYERAIANV-PPAEEKRYWQRYIYLWINYALYKEVD--AGDL-ERTRDVYRTLFIFYFSFSPRM--EE-RRIFKKYIEM  300 (365)
Q Consensus       228 ~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~a~~~~~~a~~~~~~~~~~~--~~-~~~~~~~~~~  300 (365)
                      ..|+..+... .++|        +.+|..|..+.+-.  .|.. ..-..+++++++...+...--  |. ..+|..++++
T Consensus         4 ~~fE~~i~~~~gdDP--------L~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~   75 (164)
T 2wvi_A            4 RAFEYEIRFYTGNDP--------LDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRL   75 (164)
T ss_dssp             HHHHHHCCCCCSSCT--------HHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCC--------hHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh
Confidence            3466666543 2333        56888888886421  1222 234668888887743322111  22 5677777765


Q ss_pred             HHHhCCCccHHHHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          301 ELCLGNIDPCRKLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       301 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      .      +++..+|..+...  .-..+.+|..+|.++...|++.+|.++|+.+++..
T Consensus        76 ~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~  126 (164)
T 2wvi_A           76 C------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK  126 (164)
T ss_dssp             C------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             c------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            2      5688899888765  45688999999999999999999999999999876

>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.91  E-value=0.024  Score=42.91  Aligned_cols=119  Identities=15%  Similarity=0.214  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhc--CCCchhhhHHHHhHHHHHHHHHHHhhc--cCC--hhHHHHHHHHHHhccccCCCcc--hh-HHH
Q 036703          223 QERVREVYERAIAN--VPPAEEKRYWQRYIYLWINYALYKEVD--AGD--LERTRDVYRTLFIFYFSFSPRM--EE-RRI  293 (365)
Q Consensus       223 ~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~a~~~~~~a~~~~~~~~~~~--~~-~~~  293 (365)
                      ....+..|+..+..  ..++|        +.+|..|..+.+-.  .|.  -..-..+++++++...+...--  |. ..+
T Consensus        51 l~~~r~~fE~~i~~~~~~dDP--------L~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLkl  122 (223)
T 4aez_C           51 LQKERMGHERKIETSESLDDP--------LQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRI  122 (223)
T ss_dssp             HHHHHHHHHHHHHHGGGSSCT--------HHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCCC--------hHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHH
Confidence            34566677777765  23444        56888888886422  122  2235678888888743332111  22 566


Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHhh--CcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          294 FKKYIEMELCLGNIDPCRKLYEKYLEW--SPENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       294 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      |..|+++      .+++..+|..+...  .-....+|..+|.++...|++.+|..+|+.+++..
T Consensus       123 Wl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~  180 (223)
T 4aez_C          123 WMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK  180 (223)
T ss_dssp             HHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            7777763      46888999988765  45688999999999999999999999999998765

>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A

Probab=96.87  E-value=0.016  Score=41.71  Aligned_cols=113  Identities=12%  Similarity=0.209  Sum_probs=58.3

Q ss_pred             HHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHhC
Q 036703          151 IYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM---------NYDTWFDYIRLEERVG  221 (365)
Q Consensus       151 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~---------~~~~~~~~~~~~~~~~  221 (365)
                      .|+..|.....++...+|..|+.+....-......    ..-..+++++++...+         ...+|..++.+.   +
T Consensus         5 ~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~----s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~   77 (164)
T 2wvi_A            5 AFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKE----SNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---N   77 (164)
T ss_dssp             HHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---S
T ss_pred             HHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCcc----chHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---C
Confidence            46666665555555789999998776532111000    0123355555554322         234566555542   2


Q ss_pred             CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc
Q 036703          222 NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY  281 (365)
Q Consensus       222 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~  281 (365)
                      +   +..+|..+....-...       ...+|..+|.++| ..|++.+|.++|+.+++..
T Consensus        78 ~---p~~if~~L~~~~IG~~-------~AlfY~~wA~~lE-~~~~~~~A~~Iy~~Gi~~~  126 (164)
T 2wvi_A           78 E---PLDMYSYLHNQGIGVS-------LAQFYISWAEEYE-ARENFRKADAIFQEGIQQK  126 (164)
T ss_dssp             C---HHHHHHHHHHTTSSTT-------BHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTT
T ss_pred             C---HHHHHHHHHHCCcchh-------hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcC
Confidence            2   4445555444422211       1236666666665 5666666666666666653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.063  Score=39.23  Aligned_cols=46  Identities=20%  Similarity=0.245  Sum_probs=30.3

Q ss_pred             HHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703           30 EENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus        30 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ....|+++.|.++.+..    .+...|..+++.....|+++-|..+|.++
T Consensus        15 AL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            35567777777666544    23567777777777777777777777653

>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.62  E-value=0.052  Score=41.11  Aligned_cols=121  Identities=17%  Similarity=0.308  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHc---CCCCHHHHHHHHHHHHHh---CC--HHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhh
Q 036703          191 KMRLQYEDGVRK---NPMNYDTWFDYIRLEERV---GN--QERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV  262 (365)
Q Consensus       191 ~a~~~~~~~l~~---~p~~~~~~~~~~~~~~~~---~~--~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  262 (365)
                      ..+..|+..+..   ..+-.+.|..++......   |.  -..-..++++++....++..-+-=.+|+.+|+.|+.+   
T Consensus        53 ~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---  129 (223)
T 4aez_C           53 KERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---  129 (223)
T ss_dssp             HHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---
Confidence            456677777753   234568999999875543   32  2346789999998876654322223578899998854   


Q ss_pred             ccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc
Q 036703          263 DAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP  322 (365)
Q Consensus       263 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  322 (365)
                          .+....+|.-+.......    .-..+|..++.++...|++.+|.++|+.+++..-
T Consensus       130 ----~~~p~~if~~L~~~~IG~----~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A  181 (223)
T 4aez_C          130 ----IDEPVELFSFLAHHHIGQ----ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA  181 (223)
T ss_dssp             ----CSCHHHHHHHHHHTTCST----TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             ----cCCHHHHHHHHHHCCcch----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence                146667887777654221    2277899999999999999999999999998753

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.085  Score=38.54  Aligned_cols=46  Identities=17%  Similarity=0.323  Sum_probs=26.3

Q ss_pred             HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 036703           64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV  114 (365)
Q Consensus        64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  114 (365)
                      ...|+++.|.++.+.+     ++...|..+|+.....|+++-|..+|.++-
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            3455666665554433     345566666666666666666666665543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.44  E-value=0.05  Score=42.55  Aligned_cols=110  Identities=10%  Similarity=0.072  Sum_probs=78.1

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh----HHHHHHHHHHHHhccHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH----EGWLSYIKFKLRYNEVQRARHIF   76 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~~~~~A~~~~   76 (365)
                      +++.|++.....++.+|.+......+..+++-.|+++.|.+-++.+.+++|+.    ..+..++.++.          .=
T Consensus        12 ~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~----------~R   81 (273)
T 1zbp_A           12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQ----------AR   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH----------HH
T ss_pred             CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHH----------HH
Confidence            35788999999999999999999999999999999999999999999999982    23333333322          11


Q ss_pred             HHHHH-----hCCcchHHHHHH---HHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           77 ERLVQ-----CHPYNLSAWINF---ADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        77 ~~~l~-----~~p~~~~~~~~~---~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      .+.+.     ..+..+..|...   +......|+.++|..+-.++.+. -|..
T Consensus        82 ~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~-ap~~  133 (273)
T 1zbp_A           82 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL-RQEK  133 (273)
T ss_dssp             HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCC
T ss_pred             HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-Cccc
Confidence            12222     122233344433   33444579999999999999887 5543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.16  E-value=0.33  Score=45.48  Aligned_cols=78  Identities=15%  Similarity=0.214  Sum_probs=54.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcch
Q 036703           24 NNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEV  103 (365)
Q Consensus        24 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  103 (365)
                      ...+.++...|..+.|.+..+       ++.   .-..+....|+++.|.++.+     ..+++..|..+|..+.+.|++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~-------~~~---~~f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~  697 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISP-------DQD---QKFELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNF  697 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCC-------CHH---HHHHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhCCChHHheecCC-------Ccc---hheehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCH
Confidence            555566666676666655442       211   11334566788888887753     345789999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 036703          104 DRARNVYECAVEI  116 (365)
Q Consensus       104 ~~A~~~~~~a~~~  116 (365)
                      +.|.++|.++-..
T Consensus       698 ~~A~~~y~~~~d~  710 (814)
T 3mkq_A          698 KLAIEAFTNAHDL  710 (814)
T ss_dssp             HHHHHHHHHHTCH
T ss_pred             HHHHHHHHHccCh
Confidence            9999999987443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.069  Score=45.87  Aligned_cols=100  Identities=10%  Similarity=0.113  Sum_probs=79.5

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--cchH----H
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP--YNLS----A   89 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p--~~~~----~   89 (365)
                      ..++..+|.++.+.|++++|.+.|.++.....+    ...+...+.++...+|+..+...+.++.....  .++.    +
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            456889999999999999999999999876544    57888999999999999999999999876422  1222    3


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703           90 WINFADFEMKMGEVDRARNVYECAVEIFLAD  120 (365)
Q Consensus        90 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~  120 (365)
                      ....|.++...+++..|-..|-.+... +..
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t-~~~  240 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLAT-FTS  240 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHHH-SCC
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhcc-CCc
Confidence            344466667789999999999888776 543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.79  E-value=0.22  Score=42.09  Aligned_cols=86  Identities=12%  Similarity=0.095  Sum_probs=70.3

Q ss_pred             HhcCChhHHHHHHHHHHhhCCC---h--------------------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Q 036703           31 ENLGNVAGARQIFERWMHWMPD---H--------------------EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL   87 (365)
Q Consensus        31 ~~~g~~~~A~~~~~~al~~~p~---~--------------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~   87 (365)
                      ...|+.+.|...+.+|+.+...   .                    .+...++..+...|++.+|...+.+++..+|-+.
T Consensus       126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E  205 (388)
T 2ff4_A          126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE  205 (388)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            3458889999999999986421   0                    1122345566678999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           88 SAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      .+|..+...+...|+..+|+..|++..+.
T Consensus       206 ~~~~~lm~al~~~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          206 PLWTQLITAYYLSDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998776

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.63  E-value=0.19  Score=39.29  Aligned_cols=122  Identities=9%  Similarity=0.065  Sum_probs=75.3

Q ss_pred             HHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHH
Q 036703           29 MEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRAR  107 (365)
Q Consensus        29 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~  107 (365)
                      -..+.|+++.|+...+..++.+|. ...-..+..++.-.|++++|..-++.+.+.+|+....-..+...    =+-+..+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l----I~aE~~R   81 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL----VKAAQAR   81 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH----HHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH----HHHHHHH
Confidence            456778899999999999999998 67777888888888999999999999999998554332222111    1111111


Q ss_pred             HHHHHHHhhh-hcCChhhHHHHHHH---HHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703          108 NVYECAVEIF-LADDHDEAEQLFVA---FAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus       108 ~~~~~a~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                      .-+=..-..+ .+..    +..|..   -+....   ..|+.++|..+-.++++..|.
T Consensus        82 ~~vfaG~~~P~~~g~----~~~w~~~ll~Al~~~---~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           82 KDFAQGAATAKVLGE----NEELTKSLVSFNLSM---VSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             HHHTTSCCCEECCCS----CHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHcCCCCCCCCCC----CHHHHHHHHHHHHHh---hcCCHHHHHHHHHHHHhcCcc
Confidence            1111100000 1111    222332   223334   578999999998888876654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.078  Score=45.54  Aligned_cols=106  Identities=13%  Similarity=0.108  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCC
Q 036703          207 YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSP  286 (365)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~  286 (365)
                      ..++..+|.++.+.|++++|.+.|.++...+......      +.+++....+. ...+++..+...+.++.........
T Consensus       131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k------id~~l~~irl~-l~~~d~~~~~~~~~ka~~~~~~~~d  203 (429)
T 4b4t_R          131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAK------IDVMLTIARLG-FFYNDQLYVKEKLEAVNSMIEKGGD  203 (429)
T ss_dssp             SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH------HHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHH------HHHHHHHHHHH-HHhccHHHHHHHHHHHHHhhhcCCC
Confidence            3578899999999999999999999998876554332      66777777776 6889999999999999766322211


Q ss_pred             cchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703          287 RMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEWS  321 (365)
Q Consensus       287 ~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  321 (365)
                        |.  ..+....|.+++..++|..|...|-.++...
T Consensus       204 --~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          204 --WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             --THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             --HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence              22  4455555666778899999999998887653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.36  E-value=1.2  Score=38.37  Aligned_cols=200  Identities=8%  Similarity=0.063  Sum_probs=116.1

Q ss_pred             cchHHHHHHHHHHHhhhh--cCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch--hHHHHHHHHHHHH
Q 036703          101 GEVDRARNVYECAVEIFL--ADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR--AEDLYRKFLAFEK  176 (365)
Q Consensus       101 ~~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~~~~~  176 (365)
                      |+++.|++.+....+. .  ..+......+...+..++.   ..|+++...+.+.-..+......  ...+......+..
T Consensus        30 ~~~~~a~e~ll~lEK~-~r~~~d~~s~~r~l~~iv~l~~---~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~  105 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKK-TRQASDLASSKEVLAKIVDLLA---SRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLK  105 (445)
T ss_dssp             HHHHHHHHHHHHHHHH-HSSSCSTTTCHHHHHHHHHHHH---HHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH-hhhccchhhHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence            5666666665444332 1  1111223666777777777   77888777666654444332221  1112222222222


Q ss_pred             HcCCchhhhHHHHHHHHHHHHHHHH----cCCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCchhhh
Q 036703          177 QYGDREGIEDAIAGKMRLQYEDGVR----KNPM-------NYDTWFDYIRLEERVGNQERVREVYERAIAN-VPPAEEKR  244 (365)
Q Consensus       177 ~~~~~~~~~~~~~~~a~~~~~~~l~----~~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~  244 (365)
                      .....+          .......+.    ...+       ...+...++.++...|++.+|..++...... ....... 
T Consensus       106 ~~~~~d----------~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~-  174 (445)
T 4b4t_P          106 SSKSLD----------LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS-  174 (445)
T ss_dssp             HHCTTH----------HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH-
T ss_pred             cCCchh----------HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH-
Confidence            222211          011111111    1111       1245678899999999999999999987643 2221111 


Q ss_pred             HHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhh
Q 036703          245 YWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEW  320 (365)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  320 (365)
                         ..+.+++...+++ ...+++.+|..++.++.......... |.  ..++...|.++...++|.+|-..|..++..
T Consensus       175 ---~kve~~l~q~rl~-l~~~d~~~a~~~~~ki~~~~~~~~~~-~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          175 ---EKIQFILEQMELS-ILKGDYSQATVLSRKILKKTFKNPKY-ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             ---HHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhhcccCCc-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               1256777777777 68999999999999875431111110 33  567778888888999999999999988764

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.16  E-value=1.7  Score=39.08  Aligned_cols=291  Identities=9%  Similarity=0.029  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-h---HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-H---EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF   96 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~---~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~   96 (365)
                      ..|..+..+-...++...  .-....+..+|+ +   .+-..+.....+.++......++..    .|.+...-+.++..
T Consensus        38 ~~yl~y~~l~~~l~~~~~--~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A  111 (618)
T 1qsa_A           38 YPYLEYRQITDDLMNQPA--VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYA  111 (618)
T ss_dssp             HHHHHHHHHHHTGGGCCH--HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccCCH--HHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHH
Confidence            334455444444432111  134444666676 2   2333344444456666666554443    37778888888888


Q ss_pred             HHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH--------------HHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703           97 EMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV--------------AFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus        97 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      ....|+..+|......+-.. ....+.....++.              .......   ..|+...|..+...    .|..
T Consensus       112 ~~~~G~~~~a~~~~~~lW~~-~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al---~~~~~~~a~~l~~~----l~~~  183 (618)
T 1qsa_A          112 KWNTGQSEEAWQGAKELWLT-GKSQPNACDKLFSVWRASGKQDPLAYLERIRLAM---KAGNTGLVTVLAGQ----MPAD  183 (618)
T ss_dssp             HHHTTCHHHHHHHHHHHHSC-SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHH---HTTCHHHHHHHHHT----CCGG
T ss_pred             HHHcCChhHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHh----CCHH
Confidence            88888877777666665544 3222011111111              1112222   34444444443222    2221


Q ss_pred             hhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703          163 RAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY-DTWFDYIRLEERVGNQERVREVYERAIANVPPAE  241 (365)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  241 (365)
                      . ..+...+..+...   +..        ..... .  ...|... .-...++.......+.+.|...+.......+.+.
T Consensus       184 ~-~~~a~~~~al~~~---p~~--------~~~~~-~--~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~  248 (618)
T 1qsa_A          184 Y-QTIASAIISLANN---PNT--------VLTFA-R--TTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNE  248 (618)
T ss_dssp             G-HHHHHHHHHHHHC---GGG--------HHHHH-H--HSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCH
T ss_pred             H-HHHHHHHHHHHhC---hHh--------HHHHH-h--ccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCH
Confidence            1 1122222222211   110        00000 0  0111111 1112222222344578889988888765443333


Q ss_pred             hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Q 036703          242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWS  321 (365)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  321 (365)
                      ...     ..++..++... ...+...++...+.+.....       ++..+..-.+....+.|+.+.|...|+++-...
T Consensus       249 ~~~-----~~~~~~ia~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~  315 (618)
T 1qsa_A          249 DQI-----QELRDIVAWRL-MGNDVTDEQAKWRDDAIMRS-------QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA  315 (618)
T ss_dssp             HHH-----HHHHHHHHHTS-CSTTCCHHHHHHHHHHHHTC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG
T ss_pred             HHH-----HHHHHHHHHHH-HHcCCChHHHHHHHhccccC-------CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc
Confidence            211     12333333222 23342556666666654432       222222333344557799999999998775543


Q ss_pred             cchHHHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703          322 PENCYAWSKYTELEKSLDETERARAIFELAIA  353 (365)
Q Consensus       322 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  353 (365)
                      ++.....+-.+..+...|+.++|...|+++.+
T Consensus       316 ~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          316 KEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            44556666777788889999999999988875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.97  E-value=0.67  Score=43.36  Aligned_cols=79  Identities=16%  Similarity=0.192  Sum_probs=52.3

Q ss_pred             HHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--------hCCcchHHHHHHHHHHHh
Q 036703           28 RMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQ--------CHPYNLSAWINFADFEMK   99 (365)
Q Consensus        28 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------~~p~~~~~~~~~~~~~~~   99 (365)
                      .+....|+++.|.++.+.    -.+...|..+|..+.+.|+++.|..+|.++-.        ....+...+..++.....
T Consensus       660 ~~~l~~~~~~~A~~~~~~----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLTD----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHHHHTCHHHHHHHHTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ehhhhcCCHHHHHHHHHh----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            445678999999887533    24478999999999999999999999998522        112233344444444444


Q ss_pred             hcchHHHHHHH
Q 036703          100 MGEVDRARNVY  110 (365)
Q Consensus       100 ~~~~~~A~~~~  110 (365)
                      .|++..|..+|
T Consensus       736 ~~~~~~A~~~~  746 (814)
T 3mkq_A          736 TGKFNLAFNAY  746 (814)
T ss_dssp             TTCHHHHHHHH
T ss_pred             cCchHHHHHHH
Confidence            44444444443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.87  E-value=0.78  Score=38.72  Aligned_cols=57  Identities=14%  Similarity=0.062  Sum_probs=37.1

Q ss_pred             HHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703          296 KYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       296 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                      .++..+...|++.+|...+.+++..+|-+..+|..+..++...|+..+|...|+++.
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344555566666666666666666666666666666666666666666666666553

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.69  E-value=1.2  Score=43.72  Aligned_cols=102  Identities=8%  Similarity=-0.149  Sum_probs=75.7

Q ss_pred             HHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh--------------------CCC----hHHHHHHHHHHHHhc
Q 036703           12 VVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW--------------------MPD----HEGWLSYIKFKLRYN   67 (365)
Q Consensus        12 ~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------~p~----~~~~~~~~~~~~~~~   67 (365)
                      .+...|.++..-+.+|.++...|++++|..+|+++-.-                    .+.    ...+...+.+..+.|
T Consensus       834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~  913 (1139)
T 4fhn_B          834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES  913 (1139)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred             HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence            34456777777788999999999999999999887321                    011    234556667777888


Q ss_pred             cHHHHHHHHHHHHHhCCcc-h----HHHHHHHHHHHhhcchHHHHHHHHHH
Q 036703           68 EVQRARHIFERLVQCHPYN-L----SAWINFADFEMKMGEVDRARNVYECA  113 (365)
Q Consensus        68 ~~~~A~~~~~~~l~~~p~~-~----~~~~~~~~~~~~~~~~~~A~~~~~~a  113 (365)
                      -++.+.++-+.|++..+.+ .    .+|..+-......|++++|-..+...
T Consensus       914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence            9999999999999865432 2    26788888888999999987766543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.98  E-value=2.7  Score=36.17  Aligned_cols=191  Identities=10%  Similarity=0.019  Sum_probs=116.3

Q ss_pred             cCChhHHHHHHHHHHh---hCCC----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHH----HHhhc
Q 036703           33 LGNVAGARQIFERWMH---WMPD----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADF----EMKMG  101 (365)
Q Consensus        33 ~g~~~~A~~~~~~al~---~~p~----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~----~~~~~  101 (365)
                      .|+++.|+..+...-+   ...+    ..+......++...|+++...+.+.-...........-..+.+.    .....
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            3667777776643332   1222    45667778888899999888777765554444333332222222    11222


Q ss_pred             chHHHHHHHHHHHhh---hhcCC---hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcc----CCCchhHHHHHHH
Q 036703          102 EVDRARNVYECAVEI---FLADD---HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDR----IPKGRAEDLYRKF  171 (365)
Q Consensus       102 ~~~~A~~~~~~a~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~  171 (365)
                      ..+.  ......+..   +....   ......+...++.++.   ..|++.+|.+++......    .+......++..-
T Consensus       109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e---~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q  183 (445)
T 4b4t_P          109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKK---EEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ  183 (445)
T ss_dssp             TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred             chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            2221  111222221   01100   1124567788999999   999999999999887642    2222345677777


Q ss_pred             HHHHHHcCCchhhhHHHHHHHHHHHHHHHH---cCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703          172 LAFEKQYGDREGIEDAIAGKMRLQYEDGVR---KNPMNY----DTWFDYIRLEERVGNQERVREVYERAIAN  236 (365)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~---~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  236 (365)
                      +.++...+++.        +|...+.++..   ..+.++    ..+...|.++...++|.+|-..|..+...
T Consensus       184 ~rl~l~~~d~~--------~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          184 MELSILKGDYS--------QATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHTCHH--------HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHH--------HHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            88888888865        57677766532   233343    34566788888999999999999998875

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.72  E-value=0.6  Score=40.71  Aligned_cols=62  Identities=13%  Similarity=0.096  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      ....+|++..-......|...|.+|....|++...+..+|-+....|+.-+|.-.|-+++..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~  215 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence            44556666666666667777777777777777777777777766666666666666666655

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=93.58  E-value=0.36  Score=33.30  Aligned_cols=63  Identities=10%  Similarity=0.089  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          293 IFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       293 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      +.....+.....|+-++-.+++...+...|-++.+...++..|.+.|+..+|.+++.+|.+..
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            334444555677888888888888766666689999999999999999999999999998764

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.32  E-value=0.88  Score=39.67  Aligned_cols=77  Identities=8%  Similarity=-0.008  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK   99 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~   99 (365)
                      ...+|++....+....|...|.+|....|+ ...+..+|-+....|+.-.|.-.|-+++......+.+..++..++.+
T Consensus       155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            445566666666667777777777777777 56777777777777777777777777766544456666665555443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.86  E-value=4.5  Score=35.28  Aligned_cols=103  Identities=13%  Similarity=0.116  Sum_probs=59.9

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHH----------HHHHHHHHh-----hCCC--hHHHHHHHHHHHHhccHHHHHHHHHH
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGA----------RQIFERWMH-----WMPD--HEGWLSYIKFKLRYNEVQRARHIFER   78 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A----------~~~~~~al~-----~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~   78 (365)
                      ++-+..+|+.++.++...|+....          +..+-.+++     .+++  ..+|..+.+.|...+.+++|..+..+
T Consensus       177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk  256 (523)
T 4b4t_S          177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK  256 (523)
T ss_dssp             --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence            455678899888888888876542          333333332     3444  56888899999999999999999999


Q ss_pred             HHHhCCcc-------hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           79 LVQCHPYN-------LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        79 ~l~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      +.  .|.+       ....+.+|.+..-.+++.+|.+.+..|+.. .|.+
T Consensus       257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-ap~~  303 (523)
T 4b4t_S          257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK-APHN  303 (523)
T ss_dssp             HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-CSCS
T ss_pred             Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcc
Confidence            84  4432       344566789999999999999999999998 7754

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.77  E-value=4.6  Score=35.20  Aligned_cols=129  Identities=9%  Similarity=0.008  Sum_probs=62.3

Q ss_pred             HHHHhcCChhHHHHHHHHHHh--h---------CCC-hHHHHHHHHHHHHhccHHH----------HHHHHHHHHH----
Q 036703           28 RMEENLGNVAGARQIFERWMH--W---------MPD-HEGWLSYIKFKLRYNEVQR----------ARHIFERLVQ----   81 (365)
Q Consensus        28 ~~~~~~g~~~~A~~~~~~al~--~---------~p~-~~~~~~~~~~~~~~~~~~~----------A~~~~~~~l~----   81 (365)
                      ..+...+++++|.++-...+.  .         ++- ..+|+-+..++...|+...          .+..+-.++.    
T Consensus       144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~l  223 (523)
T 4b4t_S          144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASL  223 (523)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCS
T ss_pred             HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhc
Confidence            344566788888777665541  1         111 4678877777776665543          2334434443    


Q ss_pred             -hCC-cchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703           82 -CHP-YNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL  156 (365)
Q Consensus        82 -~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  156 (365)
                       .++ ....++..+...|...+.++.|.++..++.   +|..   ........+.+|.++.   -+++|.+|.+.+..|+
T Consensus       224 r~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a---~q~~Y~eA~~~L~~A~  297 (523)
T 4b4t_S          224 KHDNETKAMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINA---IQLDYSTANEYIIAAI  297 (523)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHT
T ss_pred             ccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHH
Confidence             222 235678888899999999999999999884   4432   1233556677899999   9999999999999999


Q ss_pred             ccCCCc
Q 036703          157 DRIPKG  162 (365)
Q Consensus       157 ~~~p~~  162 (365)
                      ..+|.+
T Consensus       298 rkap~~  303 (523)
T 4b4t_S          298 RKAPHN  303 (523)
T ss_dssp             SSCSCS
T ss_pred             HhCCcc
Confidence            988864

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=87.52  E-value=9.2e-05  Score=62.74  Aligned_cols=254  Identities=9%  Similarity=-0.010  Sum_probs=142.9

Q ss_pred             CchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHH
Q 036703           18 RVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFE   97 (365)
Q Consensus        18 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~   97 (365)
                      +.+.+|..+|...+..|.+.+|+..|-++  -+|  ..+...+....+.|.++.-+..+..+.+.-. ++.+=..++-+|
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dp--s~y~eVi~~A~~~~~~edLv~yL~MaRk~~k-e~~IDteLi~ay  126 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP--SSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFAL  126 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCC--CSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC-STTTTHHHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHHhC--CCh--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc-ccccHHHHHHHH
Confidence            44778999999999999999999888655  223  3444556667778888888887776665533 555556666677


Q ss_pred             HhhcchHHHHHH----------------HHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703           98 MKMGEVDRARNV----------------YECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus        98 ~~~~~~~~A~~~----------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                      .+.++..+-.++                |+..+=. ...--..+..-|..++..+.   ..|++..|.+.-++|-     
T Consensus       127 Ak~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYe-AAKilys~isN~akLAstLV---~L~~yq~AVdaArKAn-----  197 (624)
T 3lvg_A          127 AKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYD-AAKLLYNNVSNFGRLASTLV---HLGEYQAAVDGARKAN-----  197 (624)
T ss_dssp             HTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCST-TSSTTGGGSCCCTTTSSSSS---SCSGGGSSTTTTTTCC-----
T ss_pred             HhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHH-HHHHHHHhCccHHHHHHHHH---HHHHHHHHHHHHHhcC-----
Confidence            776654432221                1111000 00000000111222333334   5566666655444331     


Q ss_pred             chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCch
Q 036703          162 GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE  241 (365)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  241 (365)
                        +...|..........+.+.-        |..+- --+-..|+.   +-.++..|...|-+++-+.+++.++.....+.
T Consensus       198 --s~ktWKeV~~ACvd~~EfrL--------AqicG-LniIvhade---L~elv~~YE~~G~f~ELIsLlEaglglErAHm  263 (624)
T 3lvg_A          198 --STRTWKEVCFACVDGKEFRL--------AQMCG-LHIVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHM  263 (624)
T ss_dssp             --SSCSHHHHTHHHHHSCTTTT--------TTHHH-HHHHCCSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCH
T ss_pred             --ChhHHHHHHHHHhCchHHHH--------HHHhc-chhcccHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhH
Confidence              23466666555556665542        22221 112233433   22355667889999999999999997666553


Q ss_pred             hhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcc---hhHHHHHHHHHHHHHhCCCccHH
Q 036703          242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRM---EERRIFKKYIEMELCLGNIDPCR  311 (365)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~  311 (365)
                               .+...+|.+|  ..-.+++-.+.++.-.+. .+.+++.   .+..+|..+.-+|..-.+++.|.
T Consensus       264 ---------GmFTELaILY--sKY~PeKlmEHlklf~sr-iNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          264 ---------GMFTELAILY--SKFKPQKMREHLELFWSR-VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             ---------HHHHHHHHHH--HSSCTTHHHHHHTTSSSS-SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             ---------HHHHHHHHHH--HhcCHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence                     3667777776  455677776666543221 1111110   11345777777777777777664

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=86.53  E-value=12  Score=30.37  Aligned_cols=43  Identities=7%  Similarity=-0.127  Sum_probs=30.1

Q ss_pred             HHHHHHHHhhhhc---CChhhHHHHHHHHHHHHHhccccchhHHHHHHHH
Q 036703          107 RNVYECAVEIFLA---DDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK  153 (365)
Q Consensus       107 ~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  153 (365)
                      .++.+++++. ..   .....++.++..+|..+.   ..|++.+|+.+|-
T Consensus       113 ~~fi~~ai~W-S~~~g~~~~Gdp~LH~~~a~~~~---~e~~~~~A~~H~i  158 (312)
T 2wpv_A          113 KDVITGMNNW-SIKFSEYKFGDPYLHNTIGSKLL---EGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHHHHHHH-HHHTSSCTTCCHHHHHHHHHHHH---HTTCHHHHHHHHH
T ss_pred             HHHHHHHHHH-HhhcCCCCCCCHHHHHHHHHHHh---hcCCHHHHHHHHH
Confidence            4455556554 21   111234899999999999   9999999998885

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.59  E-value=32  Score=33.78  Aligned_cols=55  Identities=13%  Similarity=0.029  Sum_probs=38.6

Q ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 036703           91 INFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD  157 (365)
Q Consensus        91 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  157 (365)
                      ..+...+...+.++-++++    +.. .|.+    +..-+.+|.++.   ..|++++|...|+++-.
T Consensus       816 ~~l~~~l~~~~~~~~~~~l----~~~-~~~~----~~~~yl~g~~~L---~~ge~~~A~~~F~kaa~  870 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQL----IGW-LNSD----PIAVYLKALIYL---KSKEAVKAVRCFKTTSL  870 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHHH----HHH-SCCC----HHHHHHHHHHHH---HTTCHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhhhHHHHHHH----hhh-ccCC----cHHHHHHHHHHH---hcCCHHHHHHHHHHHhh
Confidence            3445556666777666543    334 5555    445577899999   99999999999998754

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=83.06  E-value=9.5  Score=26.49  Aligned_cols=112  Identities=13%  Similarity=0.058  Sum_probs=74.5

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHH--------------------hcCChhHHHHHHHHHHhhCCChHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEE--------------------NLGNVAGARQIFERWMHWMPDHEGWLSYIK   61 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~--------------------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~   61 (365)
                      .++..++..+.+...|-+..-|+-.--+-.                    .+|+....+..|-+.   +......-.-.+
T Consensus        23 v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~---n~~se~vd~ALd   99 (172)
T 1wy6_A           23 IDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---NTLNEHVNKALD   99 (172)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---TCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh---cchHHHHHHHHH
Confidence            345666777777666665555654321111                    134444444444322   222333333346


Q ss_pred             HHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           62 FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        62 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      ....+|.-++-..++...+..++-++++...+|..|.+.|+..+|.+++.+|.+.
T Consensus       100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A          100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            6778899999999998877777778999999999999999999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	365
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	1e-12
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	1e-11
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	2e-11
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	5e-10
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	7e-10
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	7e-08
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	2e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.001

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.4 bits (158), Expect = 1e-12
 Identities = 35/193 (18%), Positives = 73/193 (37%), Gaps = 14/193 (7%)

Query: 1   FIDHGRNAWDRVV-TLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD--HEGWL 57
           F D   N ++R + TL  +   L+  Y   EE+         I+ R +          ++
Sbjct: 79  FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYI 138

Query: 58  SYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK-MGEVDRARNVYECAVEI 116
            Y+KF  R   ++  R IF++  +        ++  A  E     +   A  ++E  ++ 
Sbjct: 139 QYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 198

Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP--KGRAEDLYRKFLAF 174
           +            +A+  +     +  E +  R +++  L        ++ +++ +FLAF
Sbjct: 199 YGDIPE-----YVLAYIDYLS---HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250

Query: 175 EKQYGDREGIEDA 187
           E   GD   I   
Sbjct: 251 ESNIGDLASILKV 263

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.7 bits (151), Expect = 1e-11
 Identities = 45/308 (14%), Positives = 101/308 (32%), Gaps = 50/308 (16%)

Query: 21  QLWNNYIRMEE--------NLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEV-- 69
            +W  YI+ E+                   +E+ +  +  H + W    ++  + +++  
Sbjct: 9   DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 68

Query: 70  ------------QRARHIFERLVQ-CHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
                         A +I+ER +      N+  +  +AD+E    + ++  ++Y   + I
Sbjct: 69  EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128

Query: 117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEK 176
              D       +++ + KF       +     R I+K A +         +    + +  
Sbjct: 129 EDIDPTL----VYIQYMKFARR---AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181

Query: 177 QYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN 236
                   +          +E G++K     +    YI     +      R ++ER + +
Sbjct: 182 SKDKSVAFKI---------FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232

Query: 237 VP--PAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIF 294
               P +    W R++          E + GDL     V +  F  +       E   + 
Sbjct: 233 GSLPPEKSGEIWARFLAF--------ESNIGDLASILKVEKRRFTAFREEYEGKETALLV 284

Query: 295 KKYIEMEL 302
            +Y  M+L
Sbjct: 285 DRYKFMDL 292

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.9 bits (149), Expect = 2e-11
 Identities = 32/269 (11%), Positives = 83/269 (30%), Gaps = 38/269 (14%)

Query: 6   RNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAG--------------ARQIFERWMHWMP 51
             A+++ + +      +W    +  E    +                A  I+ER +  + 
Sbjct: 36  MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 95

Query: 52  --DHEGWLSYIKFKLRYNEVQRARHIFERLVQ-CHPYNLSAWINFADFEMKMGEVDRARN 108
             +   + +Y  ++    + ++   I+ RL+          +I +  F  +   +   R 
Sbjct: 96  KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155

Query: 109 VYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLY 168
           +++ A E      H          A   E  C+    D++     F L     G   +  
Sbjct: 156 IFKKAREDARTRHH------VYVTAALMEYYCSK---DKSVAFKIFELGLKKYGDIPEYV 206

Query: 169 RKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT----WFDYIRLEERVGNQE 224
             ++ +     +            R+ +E  +    +  +     W  ++  E  +G+  
Sbjct: 207 LAYIDYLSHLNEDN--------NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258

Query: 225 RVREVYERAIANVPPAEEKRYWQRYIYLW 253
            + +V +R         E +     +  +
Sbjct: 259 SILKVEKRRFTAFREEYEGKETALLVDRY 287

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 5e-10
 Identities = 37/291 (12%), Positives = 94/291 (32%), Gaps = 49/291 (16%)

Query: 56  WLSYIKF--------KLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEV---- 103
           W  YI++        + +    +R    +E+ +    ++   W   A +  +  ++    
Sbjct: 11  WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 70

Query: 104 ----------DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYK 153
                     D A N+YE A+   L  +      L+ A+A +EE        ++   IY 
Sbjct: 71  GDMNNAKLFSDEAANIYERAISTLLKKN----MLLYFAYADYEESRMK---YEKVHSIYN 123

Query: 154 FALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDY 213
             L          +Y +++ F ++    +          R+ ++         +  +   
Sbjct: 124 RLLAIEDID-PTLVYIQYMKFARRAEGIK--------SGRMIFKKAREDARTRHHVYVTA 174

Query: 214 IRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDV 273
             +E             ++++A        + +       + Y  Y      +   TR +
Sbjct: 175 ALMEYYCS--------KDKSVAFKIFELGLKKYGDIPEYVLAYIDY-LSHLNEDNNTRVL 225

Query: 274 YRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPEN 324
           +  +         +  E  I+ +++  E  +G++    K+ ++      E 
Sbjct: 226 FERVLTSGSLPPEKSGE--IWARFLAFESNIGDLASILKVEKRRFTAFREE 274

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.3 bits (137), Expect = 7e-10
 Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 28/185 (15%)

Query: 166 DLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQ-- 223
           D+++K++ +EK    R   +  I  ++   YE  +     + D W++  +  E+      
Sbjct: 9   DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 68

Query: 224 ------------ERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTR 271
                       +    +YERAI+ +          + + L+  YA Y+E      E+  
Sbjct: 69  EKGDMNNAKLFSDEAANIYERAISTLLK--------KNMLLYFAYADYEE-SRMKYEKVH 119

Query: 272 DVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKY 331
            +Y  L          ++   ++ +Y++       I   R +++K  E +    + +   
Sbjct: 120 SIYNRLLAI-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174

Query: 332 TELEK 336
             +E 
Sbjct: 175 ALMEY 179

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.1 bits (121), Expect = 7e-08
 Identities = 34/286 (11%), Positives = 80/286 (27%), Gaps = 51/286 (17%)

Query: 87  LSAWINFADFEMKMGEV--------DRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEM 138
           +  W  +  +E               R    YE  + +           ++   A++ E 
Sbjct: 8   VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-----GHHPDIWYEAAQYLEQ 62

Query: 139 GCN-----------CKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDA 187
                            +D A  IY+ A+  + K +   LY  +  +E+     E +   
Sbjct: 63  SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSI 121

Query: 188 IAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQ 247
               + ++  D           +  Y++   R    +  R ++++A  +           
Sbjct: 122 YNRLLAIEDID-------PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA 174

Query: 248 RYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNI 307
             +  + +                D      IF        +       YI+    L   
Sbjct: 175 ALMEYYCSK---------------DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 219

Query: 308 DPCRKLYEKYLEWSPENCYA----WSKYTELEKSLDETERARAIFE 349
           +  R L+E+ L             W+++   E ++ +      + +
Sbjct: 220 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENL-GNVAGARQIFERWMHW-MPDHEGWLSY 59
           I  GR  + +    +     ++     ME     + + A +IFE  +       E  L+Y
Sbjct: 150 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY 209

Query: 60  IKFKLRYNEVQRARHIFERLVQCHPYNLSA----WINFADFEMKMGEVDRARNVYECAVE 115
           I +    NE    R +FER++             W  F  FE  +G++     V +    
Sbjct: 210 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269

Query: 116 IFLADDHDEAEQLFVAFAKFEEM 138
            F  +   +   L V   KF ++
Sbjct: 270 AFREEYEGKETALLVDRYKFMDL 292

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 43/352 (12%), Positives = 91/352 (25%), Gaps = 33/352 (9%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           +D   +     +  +P + + ++N       LGNV   R   +  +              
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSN-------LGNVYKERGQLQEAIEHYRHALRLKPDFI 101

Query: 62  FKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD 121
                                   +   +                        +      
Sbjct: 102 DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161

Query: 122 HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDR 181
            +      VA++    +     E   A   ++ A+   P     +    ++       + 
Sbjct: 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-----NFLDAYINLGNVLKEA 216

Query: 182 EGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAE 241
              + A+A      Y   +  +P +     +   +    G  +   + Y RAI   P   
Sbjct: 217 RIFDRAVA-----AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP--- 268

Query: 242 EKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEME 301
                  +   + N A         L+    V      +  +                ++
Sbjct: 269 ------HFPDAYCNLANA-------LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315

Query: 302 LCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA 353
              GNI+   +LY K LE  PE   A S    + +   + + A   ++ AI 
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 28/301 (9%), Positives = 68/301 (22%), Gaps = 6/301 (1%)

Query: 55  GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAV 114
           G +     + +  + + A     +L +  P N    +  +    +   +DR+ +    A+
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 115 EIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF 174
           +    +         +     E              +                       
Sbjct: 61  KQ---NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117

Query: 175 EKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAI 234
           E                  ++ + G     +          L+                 
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177

Query: 235 ANV---PPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEER 291
                        ++++ + L  N+          L+  R   R +  +  + S      
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237

Query: 292 RIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELA 351
            +      +    G ID     Y + +E  P    A+       K       A   +  A
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297

Query: 352 I 352
           +
Sbjct: 298 L 298

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 13/117 (11%), Positives = 39/117 (33%), Gaps = 2/117 (1%)

Query: 2   IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIK 61
           +          +  SP+   L +++I +    G+   A +   + +   P++    S ++
Sbjct: 12  LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 71

Query: 62  FKLR--YNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI 116
             ++        A+      V      L+  +   +  M   + ++   +     E+
Sbjct: 72  HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	365
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.94
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.92
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.92
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.9
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.89
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.85
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.82
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.65
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.61
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.61
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.57
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.57
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.51
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.49
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.49
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.47
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.44
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.42
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.41
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.4
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.4
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.39
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.35
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.35
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.35
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.33
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.09
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.08
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.08
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.08
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.03
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.96
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.91
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.85
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.32
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.13
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.06
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.99
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.87
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.95
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.31
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	91.86
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	91.72

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=258.25  Aligned_cols=326  Identities=15%  Similarity=0.121  Sum_probs=290.6

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..+.++
T Consensus        14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~   93 (388)
T d1w3ba_          14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA   93 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccc
Confidence            5889999999999999999999999999999999999999999999999999 789999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhh----------------------------------cchHHHHHHHHHHHhhhhcCChhhH
Q 036703           80 VQCHPYNLSAWINFADFEMKM----------------------------------GEVDRARNVYECAVEIFLADDHDEA  125 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~----------------------------------~~~~~A~~~~~~a~~~~~~~~~~~~  125 (365)
                      +...|.....+..........                                  +....+...+.+.+.. .|..    
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----  168 (388)
T d1w3ba_          94 LRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-QPNF----  168 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-CTTC----
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc-Ccch----
Confidence            999887766655555444433                                  3344556666666666 6666    


Q ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC
Q 036703          126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM  205 (365)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~  205 (365)
                      ...+..++..+.   ..|++++|...++++++..|..  ...+..++..+...|+.+        +|+..|+++...+|.
T Consensus       169 ~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~  235 (388)
T d1w3ba_         169 AVAWSNLGCVFN---AQGEIWLAIHHFEKAVTLDPNF--LDAYINLGNVLKEARIFD--------RAVAAYLRALSLSPN  235 (388)
T ss_dssp             HHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHTTTCTT--------HHHHHHHHHHHHCTT
T ss_pred             hHHHHhhccccc---ccCcHHHHHHHHHHHHHhCccc--HHHHHHHhhhhhccccHH--------HHHHHHHHhHHHhhh
Confidence            888999999999   9999999999999999999986  678888888888888866        699999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC
Q 036703          206 NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS  285 (365)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~  285 (365)
                      +...+..+|.++...|++++|+..|+++++..|.++.         ++..++..+ ...|++++|+..++.++...    
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~----  301 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---------AYCNLANAL-KEKGSVAEAEDCYNTALRLC----  301 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH---------HHHHHHHHH-HHHSCHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHH-HHcCCHHHHHHHHHhhhccC----
Confidence            9999999999999999999999999999999999854         778888887 58999999999999999987    


Q ss_pred             Ccchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCCCCcc
Q 036703          286 PRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQPILDLPEF  362 (365)
Q Consensus       286 ~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~p~~  362 (365)
                         |. ...+..++.++...|++++|++.|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+| +.|+.
T Consensus       302 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P-~~~~a  375 (388)
T d1w3ba_         302 ---PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADA  375 (388)
T ss_dssp             ---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHH
T ss_pred             ---CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHH
Confidence               44 778889999999999999999999999999999999999999999999999999999999999999 55554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-33  Score=237.87  Aligned_cols=305  Identities=16%  Similarity=0.232  Sum_probs=274.7

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHH-------------------
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYI-------------------   60 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~-------------------   60 (365)
                      ++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.+++...|. ...+....                   
T Consensus        48 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (388)
T d1w3ba_          48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA  127 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5789999999999999999999999999999999999999999999998886 33322222                   


Q ss_pred             ---------------HHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhH
Q 036703           61 ---------------KFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA  125 (365)
Q Consensus        61 ---------------~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  125 (365)
                                     ......+....+...+.+.+...|+++..+..+|.++...|++++|...++++++. .|++    
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~----  202 (388)
T d1w3ba_         128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-DPNF----  202 (388)
T ss_dssp             HHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTC----
T ss_pred             cccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh-Cccc----
Confidence                           22223455667888888899999999999999999999999999999999999999 9988    


Q ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC
Q 036703          126 EQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM  205 (365)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~  205 (365)
                      ..+|..+|.++.   ..|++++|+..|++++...|..  ...+..++..+...|+.+        +|+..|+++++.+|+
T Consensus       203 ~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~--------~A~~~~~~al~~~p~  269 (388)
T d1w3ba_         203 LDAYINLGNVLK---EARIFDRAVAAYLRALSLSPNH--AVVHGNLACVYYEQGLID--------LAIDTYRRAIELQPH  269 (388)
T ss_dssp             HHHHHHHHHHHH---TTTCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHTCSS
T ss_pred             HHHHHHHhhhhh---ccccHHHHHHHHHHhHHHhhhH--HHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHhCCC
Confidence            999999999999   9999999999999999988876  567788888888888865        799999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCC
Q 036703          206 NYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFS  285 (365)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~  285 (365)
                      ++.+|..+|.++...|++++|...|++++...|.+..         .+..++.++ ...|++++|+..|+++++..    
T Consensus       270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~-~~~~~~~~A~~~~~~al~~~----  335 (388)
T d1w3ba_         270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---------SLNNLANIK-REQGNIEEAVRLYRKALEVF----  335 (388)
T ss_dssp             CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH-HTTTCHHHHHHHHHHHTTSC----
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccch---------hhhHHHHHH-HHCCCHHHHHHHHHHHHHhC----
Confidence            9999999999999999999999999999999998853         677778877 58999999999999999998    


Q ss_pred             Ccchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccc
Q 036703          286 PRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDE  340 (365)
Q Consensus       286 ~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  340 (365)
                         |+ +..+..+|.++...|++++|+..|+++++++|+++++|.++|.++...||
T Consensus       336 ---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         336 ---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             ---TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence               55 77889999999999999999999999999999999999999999998886

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-28  Score=203.23  Aligned_cols=283  Identities=12%  Similarity=0.034  Sum_probs=228.3

Q ss_pred             HHHHHHhCCC----chHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 036703            9 WDRVVTLSPR----VDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCH   83 (365)
Q Consensus         9 ~~~~l~~~p~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~   83 (365)
                      |+++....++    +...++..|..+...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|...|.++++.+
T Consensus         4 ~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~   83 (323)
T d1fcha_           4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK   83 (323)
T ss_dssp             HHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHhHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc
Confidence            4444444333    2345778999999999999999999999999999 8999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhh-----HHHHHH------HHHHHHHhccccchhHHHHHHH
Q 036703           84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDE-----AEQLFV------AFAKFEEMGCNCKETDRARCIY  152 (365)
Q Consensus        84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~~------~~~~~~~~~~~~~~~~~A~~~~  152 (365)
                      |+++..|..+|.++...|++++|.+.+++++.. .|.....     ......      .......   ..+.+.+|...|
T Consensus        84 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~  159 (323)
T d1fcha_          84 PDNQTALMALAVSFTNESLQRQACEILRDWLRY-TPAYAHLVTPAEEGAGGAGLGPSKRILGSLL---SDSLFLEVKELF  159 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-STTTGGGCC---------------CTTHHHH---HHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccchhhHHHh-ccchHHHHHhhhhhhhhcccccchhhHHHHH---HhhHHHHHHHHH
Confidence            999999999999999999999999999999998 7764000     000111      1112233   567889999999


Q ss_pred             HHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 036703          153 KFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYER  232 (365)
Q Consensus       153 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~  232 (365)
                      .++++..|......++..++.++...|+.+        .|+..|++++..+|++..+|..+|.++...|++++|+..|++
T Consensus       160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  231 (323)
T d1fcha_         160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYD--------KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR  231 (323)
T ss_dssp             HHHHHHSTTSCCHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHh--------hhhcccccccccccccccchhhhhhcccccccchhHHHHHHH
Confidence            999999988766788888999999999865        699999999999999999999999999999999999999999


Q ss_pred             HHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-----HHHHHHHHHHHHHhCCC
Q 036703          233 AIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-----RRIFKKYIEMELCLGNI  307 (365)
Q Consensus       233 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  307 (365)
                      +++.+|.++.         +|..+|.++ ...|++++|+..|+++++..|.....+..     ..+|..++..+...|+.
T Consensus       232 al~~~p~~~~---------a~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~  301 (323)
T d1fcha_         232 ALELQPGYIR---------SRYNLGISC-INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  301 (323)
T ss_dssp             HHHHCTTCHH---------HHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHhhccHH---------HHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCH
Confidence            9999999853         788899988 59999999999999999998654332200     23455555555555555


Q ss_pred             ccHHHH
Q 036703          308 DPCRKL  313 (365)
Q Consensus       308 ~~A~~~  313 (365)
                      +.+...
T Consensus       302 d~~~~~  307 (323)
T d1fcha_         302 DAYGAA  307 (323)
T ss_dssp             GGHHHH
T ss_pred             HHHHHH
Confidence            544443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-28  Score=202.30  Aligned_cols=282  Identities=15%  Similarity=0.096  Sum_probs=224.1

Q ss_pred             HHHHHHhhCCC-----hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           42 IFERWMHWMPD-----HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        42 ~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      .|+++....++     ...++..|..+.+.|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++.
T Consensus         3 ~~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~   82 (323)
T d1fcha_           3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL   82 (323)
T ss_dssp             HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHhHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc
Confidence            34555544333     3456788999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHc----CCch-hhhHHHHHH
Q 036703          117 FLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQY----GDRE-GIEDAIAGK  191 (365)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~  191 (365)
                       .|.+    ...|..+|.++.   ..|++++|.+.+++++...|..................    .... .........
T Consensus        83 -~p~~----~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (323)
T d1fcha_          83 -KPDN----QTALMALAVSFT---NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE  154 (323)
T ss_dssp             -CTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHH
T ss_pred             -cccc----cccccccccccc---ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHH
Confidence             9988    999999999999   99999999999999999888743111000000000000    0000 011223457


Q ss_pred             HHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhH
Q 036703          192 MRLQYEDGVRKNPMN--YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER  269 (365)
Q Consensus       192 a~~~~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (365)
                      +...|.+++..+|++  +.++..+|.++...|++++|+..|++++...|.+..         +|..+|.++ ...|++++
T Consensus       155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~-~~~g~~~~  224 (323)
T d1fcha_         155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---------LWNKLGATL-ANGNQSEE  224 (323)
T ss_dssp             HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH-HHTTCHHH
T ss_pred             HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccccccc---------chhhhhhcc-cccccchh
Confidence            889999999999875  577889999999999999999999999999999853         888889887 69999999


Q ss_pred             HHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHH-----------HHHHHHHHHhh
Q 036703          270 TRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCY-----------AWSKYTELEKS  337 (365)
Q Consensus       270 a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------~~~~~~~~~~~  337 (365)
                      |+..|+++++..       |+ +..+..+|.++...|++++|+..|+++++++|++..           +|..+...+..
T Consensus       225 A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~  297 (323)
T d1fcha_         225 AVAAYRRALELQ-------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM  297 (323)
T ss_dssp             HHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-------hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999998       55 778899999999999999999999999999988654           45566666666


Q ss_pred             ccchhHHHHHH
Q 036703          338 LDETERARAIF  348 (365)
Q Consensus       338 ~g~~~~A~~~~  348 (365)
                      .|+.+.+....
T Consensus       298 ~~~~d~~~~~~  308 (323)
T d1fcha_         298 LGQSDAYGAAD  308 (323)
T ss_dssp             HTCGGGHHHHH
T ss_pred             cCCHHHHHHHH
Confidence            66665554443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.8e-24  Score=176.49  Aligned_cols=243  Identities=16%  Similarity=0.255  Sum_probs=190.8

Q ss_pred             hHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc--------------chHHHHHHH
Q 036703           53 HEGWLSYIKFKLRYN--------EVQRARHIFERLVQCHPYNLSAWINFADFEMKMG--------------EVDRARNVY  110 (365)
Q Consensus        53 ~~~~~~~~~~~~~~~--------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~--------------~~~~A~~~~  110 (365)
                      ..+|..++++...++        ..+++..+|++|+...|.++.+|..++.++...+              ..++|+.+|
T Consensus         8 ~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~   87 (308)
T d2onda1           8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY   87 (308)
T ss_dssp             HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHH
Confidence            357777777765432        3566777888888888888888888887765443              457888899


Q ss_pred             HHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHH
Q 036703          111 ECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAG  190 (365)
Q Consensus       111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (365)
                      +++++...|.+    ..+|..++.++.   .+|++++|+.+|+++++..|.+. ..+|..++.++...|+.+        
T Consensus        88 ~ral~~~~p~~----~~l~~~ya~~~~---~~~~~~~a~~i~~~~l~~~~~~~-~~~w~~~~~~~~~~~~~~--------  151 (308)
T d2onda1          88 ERAISTLLKKN----MLLYFAYADYEE---SRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIK--------  151 (308)
T ss_dssp             HHHHTTTTTTC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHHTSSSSCT-HHHHHHHHHHHHHHHCHH--------
T ss_pred             HHHHHHcCCCC----HHHHHHHHHHHH---hcccHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHcCChH--------
Confidence            99987524555    788999999998   89999999999999998877652 567888888888877744        


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhH
Q 036703          191 KMRLQYEDGVRKNPMNYDTWFDYIRLEE-RVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLER  269 (365)
Q Consensus       191 ~a~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (365)
                      .|+.+|+++++.+|.+...|...+.... ..|+.+.|..+|++++..+|.++.         +|..++.++ ...|++++
T Consensus       152 ~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~---------~w~~y~~~~-~~~g~~~~  221 (308)
T d2onda1         152 SGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPE---------YVLAYIDYL-SHLNEDNN  221 (308)
T ss_dssp             HHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHH-HTTCCHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHH---------HHHHHHHHH-HHcCChHH
Confidence            6888899999988888888888887654 457888899999999988888743         888888886 58888999


Q ss_pred             HHHHHHHHHhccccCCCcchh--HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchH
Q 036703          270 TRDVYRTLFIFYFSFSPRMEE--RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENC  325 (365)
Q Consensus       270 a~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  325 (365)
                      |+.+|+++++..|..    |.  ..+|..++.++...|+.+.++++++++.+..|+..
T Consensus       222 aR~~fe~ai~~~~~~----~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         222 TRVLFERVLTSGSLP----PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHHHHHSSSSC----GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            999999988875432    32  56888888888888888888888888888887653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.4e-24  Score=175.96  Aligned_cols=239  Identities=15%  Similarity=0.253  Sum_probs=206.3

Q ss_pred             chHHHHHHHHHHHhhc--------chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc--------------c
Q 036703           86 NLSAWINFADFEMKMG--------EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC--------------K  143 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~  143 (365)
                      ...+|..++.+....+        ..+++..+|++|+.. .|..    +.+|+.++.++.   ..              +
T Consensus         7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~-~~~~----~~lW~~y~~~~~---~~~~~~~~~~~~~~~~~   78 (308)
T d2onda1           7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHH----PDIWYEAAQYLE---QSSKLLAEKGDMNNAKL   78 (308)
T ss_dssp             HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTC----HHHHHHHHHHHH---HHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHH-CCCC----HHHHHHHHHHHH---HcCchHHHHHHHhhccc
Confidence            5678999999877543        356788899999999 9988    999999999876   43              3


Q ss_pred             hhHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhC
Q 036703          144 ETDRARCIYKFALDR-IPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY-DTWFDYIRLEERVG  221 (365)
Q Consensus       144 ~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~  221 (365)
                      ..++|+.+|+++++. .|.+  ..+|..++.++...|+.+        .|+.+|++++...|.+. .+|..++.+....|
T Consensus        79 ~~~~a~~i~~ral~~~~p~~--~~l~~~ya~~~~~~~~~~--------~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~  148 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKN--MLLYFAYADYEESRMKYE--------KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE  148 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTC--HHHHHHHHHHHHHTTCHH--------HHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhcccHH--------HHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC
Confidence            468999999999986 4443  679999999999999865        69999999999999775 58999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHH
Q 036703          222 NQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEM  300 (365)
Q Consensus       222 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~  300 (365)
                      +.++|+.+|+++++..|.+..         +|..++.......|+.+.|+.+|++++...       |+ +.+|..++.+
T Consensus       149 ~~~~ar~i~~~al~~~~~~~~---------~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-------p~~~~~w~~y~~~  212 (308)
T d2onda1         149 GIKSGRMIFKKAREDARTRHH---------VYVTAALMEYYCSKDKSVAFKIFELGLKKY-------GDIPEYVLAYIDY  212 (308)
T ss_dssp             CHHHHHHHHHHHHTSTTCCTH---------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-------TTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHhccCHHHHHHHHHHHHHhh-------hhhHHHHHHHHHH
Confidence            999999999999999998864         667777664335689999999999999987       55 8899999999


Q ss_pred             HHHhCCCccHHHHHHHHHhhCcch----HHHHHHHHHHHhhccchhHHHHHHHHHhcCcCCC
Q 036703          301 ELCLGNIDPCRKLYEKYLEWSPEN----CYAWSKYTELEKSLDETERARAIFELAIAQPILD  358 (365)
Q Consensus       301 ~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  358 (365)
                      +...|++++|+.+|++++...|.+    ..+|..+..++...|+.+.++++++++.+..|.+
T Consensus       213 ~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         213 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            999999999999999999987643    4699999999999999999999999999888743

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-22  Score=167.09  Aligned_cols=213  Identities=7%  Similarity=0.034  Sum_probs=168.7

Q ss_pred             hCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhCCcchHHHHH
Q 036703           15 LSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN-EVQRARHIFERLVQCHPYNLSAWIN   92 (365)
Q Consensus        15 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~   92 (365)
                      .+|+..+++..++.++.+.+.+++|+..++++++++|+ ..+|...+.++...| ++++|+..++++++.+|++..+|..
T Consensus        38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            35677788888888888889999999999999999998 788988888888776 5889999999999999999999999


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHH
Q 036703           93 FADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFL  172 (365)
Q Consensus        93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  172 (365)
                      +|.++...|++++|++.++++++. .|.+    ..+|..+|.++.   ..|++++|+..|+++++.+|.+  ...|...+
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~-dp~n----~~a~~~~~~~~~---~~~~~~~Al~~~~~al~~~p~n--~~a~~~r~  187 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQ-DAKN----YHAWQHRQWVIQ---EFKLWDNELQYVDQLLKEDVRN--NSVWNQRY  187 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHTCCTTHHHHHHHHHHHCTTC--HHHHHHHH
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhh-hhcc----hHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHCCcc--HHHHHHHH
Confidence            999999999999999999999998 8888    889999999888   8888888888888888888876  45666666


Q ss_pred             HHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Q 036703          173 AFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPA  240 (365)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  240 (365)
                      .+....+......  ..++|+..+.++++.+|++..+|..++.++... ..+++...++++++..|..
T Consensus       188 ~~l~~~~~~~~~~--~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~  252 (315)
T d2h6fa1         188 FVISNTTGYNDRA--VLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSH  252 (315)
T ss_dssp             HHHHHTTCSCSHH--HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTC
T ss_pred             HHHHHccccchhh--hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCc
Confidence            6555555433211  234677777777888888877777777765443 3567777777777766654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-23  Score=169.87  Aligned_cols=187  Identities=9%  Similarity=0.050  Sum_probs=157.8

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG-NVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      +++|+.+++++++++|++..+|...|.++...| ++++|+..++++++.+|+ ..+|..++.++...|++++|+..+.++
T Consensus        59 ~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~ka  138 (315)
T d2h6fa1          59 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI  138 (315)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhh
Confidence            578899999999999999999999998888876 488999999999999998 789999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhcccc------chhHHHHHHHH
Q 036703           80 VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNC------KETDRARCIYK  153 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~  153 (365)
                      ++.+|++..+|..+|.++...|++++|++.|+++++. .|.+    ..+|..++.++.   ..      +.+++|+..+.
T Consensus       139 l~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~-~p~n----~~a~~~r~~~l~---~~~~~~~~~~~~~ai~~~~  210 (315)
T d2h6fa1         139 LNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-DVRN----NSVWNQRYFVIS---NTTGYNDRAVLEREVQYTL  210 (315)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HTTCSCSHHHHHHHHHHHH
T ss_pred             hhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-CCcc----HHHHHHHHHHHH---HccccchhhhhHHhHHHHH
Confidence            9999999999999999999999999999999999999 8888    888888888766   44      34678999999


Q ss_pred             HHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH
Q 036703          154 FALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY  207 (365)
Q Consensus       154 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~  207 (365)
                      ++++..|.+  ...|...+.++...+.         .++...+++++...|+..
T Consensus       211 ~al~~~P~~--~~~~~~l~~ll~~~~~---------~~~~~~~~~~~~l~~~~~  253 (315)
T d2h6fa1         211 EMIKLVPHN--ESAWNYLKGILQDRGL---------SKYPNLLNQLLDLQPSHS  253 (315)
T ss_dssp             HHHHHSTTC--HHHHHHHHHHHTTTCG---------GGCHHHHHHHHHHTTTCC
T ss_pred             HHHHhCCCc--hHHHHHHHHHHHhcCh---------HHHHHHHHHHHHhCCCcC
Confidence            999999886  8888888777654442         257788888888777653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=6.5e-23  Score=170.51  Aligned_cols=278  Identities=6%  Similarity=-0.121  Sum_probs=219.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHH----------HhccHHHHHHHHHHHHHhCCcchHHHH
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKL----------RYNEVQRARHIFERLVQCHPYNLSAWI   91 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~----------~~~~~~~A~~~~~~~l~~~p~~~~~~~   91 (365)
                      ...+.......+..++|+.+++++++.+|+ ..+|.....+..          ..|.+++|+.+++++++.+|+++.+|.
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~  111 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH  111 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence            334444444445568999999999999999 678876665544          345688999999999999999999999


Q ss_pred             HHHHHHHhhcc--hHHHHHHHHHHHhhhhcCChhhHHHHH-HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHH
Q 036703           92 NFADFEMKMGE--VDRARNVYECAVEIFLADDHDEAEQLF-VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLY  168 (365)
Q Consensus        92 ~~~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  168 (365)
                      .++.++...++  .++|+..++++++. .|.+    ...| ...+.++.   ..+.+++|+..++++++.+|.+  ...|
T Consensus       112 ~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~----~~~~~~~~~~~~~---~~~~~~~Al~~~~~~i~~~p~~--~~a~  181 (334)
T d1dcea1         112 HRCWLLSRLPEPNWARELELCARFLEA-DERN----FHCWDYRRFVAAQ---AAVAPAEELAFTDSLITRNFSN--YSSW  181 (334)
T ss_dssp             HHHHHHHTCSSCCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHHH---TCCCHHHHHHHHHTTTTTTCCC--HHHH
T ss_pred             HhhHHHHHhccccHHHHHHHHHHHHhh-Cchh----hhhhhhHHHHHHH---hccccHHHHHHHHHHHHcCCCC--HHHH
Confidence            99998888764  78999999999999 8887    6665 46678888   8999999999999999999987  6788


Q ss_pred             HHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHH
Q 036703          169 RKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQR  248 (365)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  248 (365)
                      ...+.++...|+.+        .|...+++++...|.+...+.    .....+..+++...+.+++...|....      
T Consensus       182 ~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~------  243 (334)
T d1dcea1         182 HYRSCLLPQLHPQP--------DSGPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLF------  243 (334)
T ss_dssp             HHHHHHHHHHSCCC--------CSSSCCSSCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSS------
T ss_pred             HHHHHHHHHhcCHH--------HHHHHHHHhHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHHhCcchhh------
Confidence            88888888888766        355666666666555544333    334567778899999999999887653      


Q ss_pred             hHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHH
Q 036703          249 YIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYA  327 (365)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  327 (365)
                         .+...+..+ ...+++.+|+..+.+++..+       |. ...+..+|.++...|++++|+.+|+++++++|++...
T Consensus       244 ---~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y  312 (334)
T d1dcea1         244 ---RCELSVEKS-TVLQSELESCKELQELEPEN-------KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY  312 (334)
T ss_dssp             ---SCCCCHHHH-HHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred             ---HHHHHHHHH-HHHhhHHHHHHHHHHHHhhC-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHH
Confidence               233334443 36688899999999999988       55 7888999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcc
Q 036703          328 WSKYTELEKSLD  339 (365)
Q Consensus       328 ~~~~~~~~~~~g  339 (365)
                      |..++..+....
T Consensus       313 ~~~L~~~~~~e~  324 (334)
T d1dcea1         313 LDDLRSKFLLEN  324 (334)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhHhh
Confidence            998887666433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=3.2e-23  Score=172.42  Aligned_cols=262  Identities=8%  Similarity=-0.033  Sum_probs=221.8

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC----------ChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc--c
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG----------NVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN--E   68 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g----------~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~--~   68 (365)
                      .++|+.+++++++.+|++..+|...+.+....+          .+++|+..++++++.+|+ ..+|..++.++...+  +
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~  124 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhcccc
Confidence            368999999999999999999988777766543          478999999999999999 789999998877765  5


Q ss_pred             HHHHHHHHHHHHHhCCcchHHHH-HHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHH
Q 036703           69 VQRARHIFERLVQCHPYNLSAWI-NFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDR  147 (365)
Q Consensus        69 ~~~A~~~~~~~l~~~p~~~~~~~-~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (365)
                      +++|...+.+++..+|.+...|. ..+.++...+.+++|+..++++++. .|.+    ..+|..+|.++.   ..|++++
T Consensus       125 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~-~p~~----~~a~~~l~~~~~---~~~~~~~  196 (334)
T d1dcea1         125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NFSN----YSSWHYRSCLLP---QLHPQPD  196 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-TCCC----HHHHHHHHHHHH---HHSCCCC
T ss_pred             HHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc-CCCC----HHHHHHHHHHHH---HhcCHHH
Confidence            89999999999999999888865 5678888899999999999999999 9998    999999999999   9999999


Q ss_pred             HHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHH
Q 036703          148 ARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVR  227 (365)
Q Consensus       148 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~  227 (365)
                      |...+++++...|..  ...+..+.    ..+..+        .+...|.+++...|.+...+..++..+...|++.+|.
T Consensus       197 A~~~~~~~~~~~~~~--~~~~~~~~----~l~~~~--------~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~  262 (334)
T d1dcea1         197 SGPQGRLPENVLLKE--LELVQNAF----FTDPND--------QSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC  262 (334)
T ss_dssp             SSSCCSSCHHHHHHH--HHHHHHHH----HHCSSC--------SHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHhHHHH--HHHHHHHH----Hhcchh--------HHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence            988888877766653  22333222    223322        4788999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHH
Q 036703          228 EVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMEL  302 (365)
Q Consensus       228 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~  302 (365)
                      ..+.+++..+|.+.         .+|..+|..+ ...|++++|+..|+++++++       |. ...|..++..+.
T Consensus       263 ~~~~~~~~~~p~~~---------~~~~~l~~~~-~~~~~~~eA~~~~~~ai~ld-------P~~~~y~~~L~~~~~  321 (334)
T d1dcea1         263 KELQELEPENKWCL---------LTIILLMRAL-DPLLYEKETLQYFSTLKAVD-------PMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHCTTCHHHH---------HHHHHHHHHH-CTGGGHHHHHHHHHHHHHHC-------GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCchHH---------HHHHHHHHHH-HHCCCHHHHHHHHHHHHHHC-------cccHHHHHHHHHHHh
Confidence            99999999999874         4888899988 59999999999999999999       54 667777765554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=7.8e-22  Score=157.87  Aligned_cols=224  Identities=13%  Similarity=0.070  Sum_probs=173.4

Q ss_pred             hhhHHHHHHHHHHhC----CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLS----PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIF   76 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~----p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~   76 (365)
                      .+.|...+++++...    |....+++.+|.++...|++++|+..|+++++++|+ +.+|..+|.++...|++++|+..|
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence            356777788888653    344678999999999999999999999999999999 899999999999999999999999


Q ss_pred             HHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703           77 ERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL  156 (365)
Q Consensus        77 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  156 (365)
                      +++++.+|+++.++..+|.++...|++++|++.|+++++. .|.+    ......++..+.   ..+..+.+........
T Consensus        95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  166 (259)
T d1xnfa_          95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-DPND----PFRSLWLYLAEQ---KLDEKQAKEVLKQHFE  166 (259)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHCHHHHHHHHHHHHH
T ss_pred             hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh-cccc----HHHHHHHHHHHH---HhhhHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999 9887    555555555555   5555555544444444


Q ss_pred             ccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 036703          157 DRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIAN  236 (365)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  236 (365)
                      ...+....   +. ....  ..+....  ......+...+.......|....+|+.+|.++...|++++|+..|++++..
T Consensus       167 ~~~~~~~~---~~-~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         167 KSDKEQWG---WN-IVEF--YLGNISE--QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HSCCCSTH---HH-HHHH--HTTSSCH--HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccchhhhh---hh-HHHH--HHHHHHH--HHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            43333211   11 1111  1222111  111234555555666666777889999999999999999999999999999


Q ss_pred             CCCch
Q 036703          237 VPPAE  241 (365)
Q Consensus       237 ~p~~~  241 (365)
                      +|.+.
T Consensus       239 ~p~~~  243 (259)
T d1xnfa_         239 NVHNF  243 (259)
T ss_dssp             CCTTC
T ss_pred             CCCCH
Confidence            99874

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.9e-18  Score=144.37  Aligned_cols=312  Identities=12%  Similarity=0.013  Sum_probs=232.2

Q ss_pred             CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc----
Q 036703           17 PRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN----   86 (365)
Q Consensus        17 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----   86 (365)
                      +..+.+....|.++...|++++|+..++++++..|+      ..++..+|.++...|++++|...|++++...|..    
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence            334667777899999999999999999999999987      2367788999999999999999999999865432    


Q ss_pred             --hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC----hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCC
Q 036703           87 --LSAWINFADFEMKMGEVDRARNVYECAVEIFLADD----HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIP  160 (365)
Q Consensus        87 --~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p  160 (365)
                        ...+..++.++...|++..|...+.+++.. .+..    .......+..++.++.   ..|+++.+...+.+++...+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~~~~~~~~~la~~~~---~~~~~~~a~~~~~~~~~~~~  164 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQL-INEQHLEQLPMHEFLVRIRAQLLW---AWARLDEAEASARSGIEVLS  164 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCTTSTHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhcccchhhHHHHHHHHHHHHHH---HhcchhhhHHHHHHHHHHhh
Confidence              355677888999999999999999999886 4321    1233557778899999   99999999999999988665


Q ss_pred             Cch---hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHhCCHHHHHHHH
Q 036703          161 KGR---AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPM-------NYDTWFDYIRLEERVGNQERVREVY  230 (365)
Q Consensus       161 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~-------~~~~~~~~~~~~~~~~~~~~A~~~~  230 (365)
                      ...   ........+......+...        .+...+.++....+.       ...++...+.++...|++++|...+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  236 (366)
T d1hz4a_         165 SYQPQQQLQCLAMLIQCSLARGDLD--------NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL  236 (366)
T ss_dssp             TSCGGGGHHHHHHHHHHHHHHTCHH--------HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHhhhhHH--------HHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            432   2334444455555666644        455666665553222       2346777888899999999999999


Q ss_pred             HHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCcc
Q 036703          231 ERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDP  309 (365)
Q Consensus       231 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  309 (365)
                      ++++...|.+....     ...+...+..+ ...|++++|...+++++......... |. ...+..+|.++...|++++
T Consensus       237 ~~~~~~~~~~~~~~-----~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  309 (366)
T d1hz4a_         237 RHTAKPEFANNHFL-----QGQWRNIARAQ-ILLGEFEPAEIVLEELNENARSLRLM-SDLNRNLLLLNQLYWQAGRKSD  309 (366)
T ss_dssp             HHSCCCCCTTCGGG-----HHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHhccccchHH-----HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHhhcccC-hHHHHHHHHHHHHHHHCCCHHH
Confidence            99998877654321     33556677776 68999999999999998764322221 44 6788999999999999999


Q ss_pred             HHHHHHHHHhhCcch---------HHHHHHHHHHHhhccchhHHHHH
Q 036703          310 CRKLYEKYLEWSPEN---------CYAWSKYTELEKSLDETERARAI  347 (365)
Q Consensus       310 A~~~~~~al~~~p~~---------~~~~~~~~~~~~~~g~~~~A~~~  347 (365)
                      |.+.+++++++.+..         ......+...+...|..+++...
T Consensus       310 A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         310 AQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            999999999875432         22333444445555666665443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.4e-20  Score=149.14  Aligned_cols=231  Identities=13%  Similarity=0.027  Sum_probs=170.8

Q ss_pred             cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCC
Q 036703          101 GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGD  180 (365)
Q Consensus       101 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  180 (365)
                      .+.+.|+..+++++.. .+...+....+++.+|.++.   ..|++++|+..|+++++..|++  +..|..++..+...|+
T Consensus        13 ~~~e~al~~~~e~l~~-~~~~~~~~a~~~~~~G~~y~---~~g~~~~A~~~~~~al~l~p~~--~~a~~~lg~~~~~~g~   86 (259)
T d1xnfa_          13 LQQEVILARMEQILAS-RALTDDERAQLLYERGVLYD---SLGLRALARNDFSQALAIRPDM--PEVFNYLGIYLTQAGN   86 (259)
T ss_dssp             HHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHhhccCCCC--HHHHhhhchHHHHHHH
Confidence            4566777788888876 55444556889999999999   9999999999999999999987  6789999999999998


Q ss_pred             chhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHH
Q 036703          181 REGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYK  260 (365)
Q Consensus       181 ~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  260 (365)
                      .+        +|+..|+++++.+|++..++..+|.++...|++++|...|+++++..|.+..       ...+..++.. 
T Consensus        87 ~~--------~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~~-  150 (259)
T d1xnfa_          87 FD--------AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF-------RSLWLYLAEQ-  150 (259)
T ss_dssp             HH--------HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------HHHHHHHHHH-
T ss_pred             HH--------HhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHH-------HHHHHHHHHH-
Confidence            66        7999999999999999999999999999999999999999999999998754       2233333322 


Q ss_pred             hhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccc
Q 036703          261 EVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDE  340 (365)
Q Consensus       261 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~  340 (365)
                        ..+..+.+..+........+..    +.......+.......+..+.+...+.......|+...+|..+|.++...|+
T Consensus       151 --~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~  224 (259)
T d1xnfa_         151 --KLDEKQAKEVLKQHFEKSDKEQ----WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD  224 (259)
T ss_dssp             --HHCHHHHHHHHHHHHHHSCCCS----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             --HhhhHHHHHHHHHHhhccchhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCC
Confidence              3344444444444433332111    1111111111001122334555566666666678888899999999999999


Q ss_pred             hhHHHHHHHHHhcCcCCCC
Q 036703          341 TERARAIFELAIAQPILDL  359 (365)
Q Consensus       341 ~~~A~~~~~~a~~~~~~~~  359 (365)
                      +++|...|+++++.+|.+.
T Consensus       225 ~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         225 LDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             HHHHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHHHHHcCCCCH
Confidence            9999999999999999654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=3.2e-17  Score=136.84  Aligned_cols=286  Identities=11%  Similarity=0.003  Sum_probs=222.4

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch-----HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNL-----SAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAE  126 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~  126 (365)
                      ......+.++...|++++|+..++++++..|++.     .++..+|.++...|++++|+..|+++++. .+..  .....
T Consensus        13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~   91 (366)
T d1hz4a_          13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM-ARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHhhcchHHHH
Confidence            4455568889999999999999999999999763     46788899999999999999999999987 5432  23335


Q ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC------chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHH
Q 036703          127 QLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK------GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGV  200 (365)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l  200 (365)
                      ..+..++.++.   ..|++..+...+.+++...+.      ..........+..+...|+.+        .+...+++++
T Consensus        92 ~~~~~~~~~~~---~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~--------~a~~~~~~~~  160 (366)
T d1hz4a_          92 WSLIQQSEILF---AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD--------EAEASARSGI  160 (366)
T ss_dssp             HHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchh--------hhHHHHHHHH
Confidence            66778888999   999999999999998864321      112345556677777888755        6888888888


Q ss_pred             HcCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHH
Q 036703          201 RKNPMN-----YDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR  275 (365)
Q Consensus       201 ~~~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  275 (365)
                      ...+..     ...+...+..+...+++..+...+.++....+......  .....++...+.++ ...|++++|...++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~a~~~~~  237 (366)
T d1hz4a_         161 EVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS--DWISNANKVRVIYW-QMTGDKAAAANWLR  237 (366)
T ss_dssp             HHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH--HHHHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccC--chHHHHHHHHHHHH-HhcccHHHHHHHHH
Confidence            866543     34567777888899999999999999887643321100  11133556666666 58899999999999


Q ss_pred             HHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhh------CcchHHHHHHHHHHHhhccchhHHHHHHH
Q 036703          276 TLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEW------SPENCYAWSKYTELEKSLDETERARAIFE  349 (365)
Q Consensus       276 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~  349 (365)
                      +++...+....  .....+..++.++...|++++|...+++++..      .|....++..++.++...|++++|...++
T Consensus       238 ~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  315 (366)
T d1hz4a_         238 HTAKPEFANNH--FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL  315 (366)
T ss_dssp             HSCCCCCTTCG--GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhccccch--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99988654422  12556778899999999999999999999843      46677899999999999999999999999


Q ss_pred             HHhcCcC
Q 036703          350 LAIAQPI  356 (365)
Q Consensus       350 ~a~~~~~  356 (365)
                      +++++.+
T Consensus       316 ~Al~l~~  322 (366)
T d1hz4a_         316 DALKLAN  322 (366)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9988653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.5e-15  Score=103.30  Aligned_cols=110  Identities=16%  Similarity=0.112  Sum_probs=103.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG  101 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  101 (365)
                      ....|..+...|++++|+..|.++++.+|+ ..+|..+|.++...|++++|+..+.+++..+|+++.+|..+|.++...|
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            345789999999999999999999999999 8899999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703          102 EVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus       102 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      ++++|+..|+++++. .|++    +.++..++.+..
T Consensus        86 ~~~~A~~~~~~a~~~-~p~~----~~~~~~l~~l~~  116 (117)
T d1elwa_          86 RFEEAKRTYEEGLKH-EANN----PQLKEGLQNMEA  116 (117)
T ss_dssp             CHHHHHHHHHHHHTT-CTTC----HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHhC
Confidence            999999999999999 9998    888888887654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=7.1e-15  Score=110.57  Aligned_cols=136  Identities=15%  Similarity=0.070  Sum_probs=119.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKM  100 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  100 (365)
                      .+|. .|..+...|++++|++.|.++  ..|++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++.+.
T Consensus         7 ~l~~-~g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_           7 SLWN-EGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHH-HHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHH-HHHHHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence            3454 488999999999999999874  2345789999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhhhcCC------------hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          101 GEVDRARNVYECAVEIFLADD------------HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       101 ~~~~~A~~~~~~a~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      |++++|++.|++++.. .+.+            ......++..+|.++.   ..|++++|.+.|+++++..|...
T Consensus        84 g~~~~A~~~~~kAl~~-~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~---~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQ-LRGNQLIDYKILGLQFKLFACEVLYNIAFMYA---KKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             TCHHHHHHHHHHHHHT-TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             ccHHHHHHHHHHHHHh-CccCchHHHHHhhhhcccchHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcCCCcc
Confidence            9999999999999987 5543            1123578899999999   99999999999999999888753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=5e-15  Score=119.60  Aligned_cols=207  Identities=13%  Similarity=0.059  Sum_probs=157.2

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYN------   86 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~------   86 (365)
                      .+.|...|.++...|++++|...|.+++++.+.       ...|...|.++...|++++|+..|++++...+..      
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            456888899999999999999999999986422       4678999999999999999999999999876544      


Q ss_pred             hHHHHHHHHHHHh-hcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCch
Q 036703           87 LSAWINFADFEMK-MGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus        87 ~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      ..++..+|.++.. .|++++|+..|+++++. .+..  ......++..+|.++.   ..|++++|+..|++++...+...
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l-~~~~~~~~~~~~~~~~la~~~~---~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEW-YAQDQSVALSNKCFIKCADLKA---LDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH-HHhcCchhhhhhHHHHHHHHHH---HcChHHHHHHHHHHHHHhCccch
Confidence            5677888888755 69999999999999987 5432  2334667889999999   99999999999999998776643


Q ss_pred             -----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHH--hCCHHHHHHHHH
Q 036703          164 -----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD-----TWFDYIRLEER--VGNQERVREVYE  231 (365)
Q Consensus       164 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~-----~~~~~~~~~~~--~~~~~~A~~~~~  231 (365)
                           ....+...+..+...|+..        .|...++++++.+|....     ....++..+..  .+.+++|+..|.
T Consensus       193 ~~~~~~~~~~~~~~~~~l~~~d~~--------~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~  264 (290)
T d1qqea_         193 LSQWSLKDYFLKKGLCQLAATDAV--------AAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD  264 (290)
T ss_dssp             TTGGGHHHHHHHHHHHHHHTTCHH--------HHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHHHHHHHhccHH--------HHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence                 1234455556666777755        689999999999886543     33445554433  345888888888


Q ss_pred             HHHhcCC
Q 036703          232 RAIANVP  238 (365)
Q Consensus       232 ~~~~~~p  238 (365)
                      ++.+.+|
T Consensus       265 ~~~~lD~  271 (290)
T d1qqea_         265 NFMRLDK  271 (290)
T ss_dssp             TSSCCCH
T ss_pred             HHhhcCH
Confidence            7766654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.2e-15  Score=106.96  Aligned_cols=125  Identities=14%  Similarity=0.073  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK   99 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~   99 (365)
                      ..+...|..+.+.|++++|+..|+++++.+|+ ...|..+|.++...|++++|...|+++++.+|++..+|..+|.++..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            34566799999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHH
Q 036703          100 MGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCI  151 (365)
Q Consensus       100 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  151 (365)
                      .|++++|+..|+++++. .|.+    +.++..++.+.... ..+.+++|...
T Consensus        91 ~g~~~eA~~~~~~a~~~-~p~~----~~~~~~l~~~~~~~-~~~~~~~a~~~  136 (159)
T d1a17a_          91 LGKFRAALRDYETVVKV-KPHD----KDAKMKYQECNKIV-KQKAFERAIAG  136 (159)
T ss_dssp             TTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHc-CCCC----HHHHHHHHHHHHHH-HHHHHHHHHhC
Confidence            99999999999999999 9988    77777766554300 33445555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.8e-14  Score=116.34  Aligned_cols=248  Identities=9%  Similarity=0.044  Sum_probs=171.4

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 036703            4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCH   83 (365)
Q Consensus         4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~   83 (365)
                      ++.++++++-+........+..+.  -...+++++|..+|.++             |.++...|++++|...|.+++...
T Consensus         3 ~~~~~l~~aek~~~~~~~~~~~~~--~~~~~~~~~Aa~~y~~a-------------a~~y~~~~~~~~A~~~y~kA~~~~   67 (290)
T d1qqea_           3 DPVELLKRAEKKGVPSSGFMKLFS--GSDSYKFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAADYQ   67 (290)
T ss_dssp             CHHHHHHHHHHHSSCCCTHHHHHS--CCSHHHHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCcchhHHHHhc--CCccccHHHHHHHHHHH-------------HHHHHHCcCHHHHHHHHHHHHHHH
Confidence            456677777666554333322211  01122356666666655             788999999999999999999863


Q ss_pred             ------CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC--hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 036703           84 ------PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD--HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFA  155 (365)
Q Consensus        84 ------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  155 (365)
                            ++....+..+|.+|.+.|++++|++.|+++++. .+..  ......++..++.++..  ..|++++|+..|+++
T Consensus        68 ~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~A~~~~~~A  144 (290)
T d1qqea_          68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI-FTHRGQFRRGANFKFELGEILEN--DLHDYAKAIDCYELA  144 (290)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH-hhhcccchhHHHHHHHHHHhHhh--HHHHHHHHHHHHHHH
Confidence                  233568999999999999999999999999987 6543  23335677788887750  469999999999999


Q ss_pred             hccCCCch----hHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHhCCHH
Q 036703          156 LDRIPKGR----AEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNY-------DTWFDYIRLEERVGNQE  224 (365)
Q Consensus       156 l~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~-------~~~~~~~~~~~~~~~~~  224 (365)
                      ++..+...    ...++..++.++...|++.        +|+..|++++...|.+.       ..+...+.++...|++.
T Consensus       145 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~--------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~  216 (290)
T d1qqea_         145 GEWYAQDQSVALSNKCFIKCADLKALDGQYI--------EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV  216 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCchhhhhhHHHHHHHHHHHcChHH--------HHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHH
Confidence            87643321    3456778889999999866        79999999999887764       34567778888899999


Q ss_pred             HHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHh-hccCChhHHHHHHHHHHhcc
Q 036703          225 RVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKE-VDAGDLERTRDVYRTLFIFY  281 (365)
Q Consensus       225 ~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~a~~~~  281 (365)
                      .|...++++++.+|.....+.    ..+...++..++ ...+.+++|+..|.++.+++
T Consensus       217 ~A~~~~~~~~~~~~~~~~sre----~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         217 AAARTLQEGQSEDPNFADSRE----SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             HHHHHHHGGGCC-------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHhCCCccchHH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence            999999999999886433211    112233333331 12345777777777666654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.9e-15  Score=100.48  Aligned_cols=109  Identities=15%  Similarity=0.082  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHH
Q 036703           56 WLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKF  135 (365)
Q Consensus        56 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  135 (365)
                      ....|..+...|++++|+..|.++++.+|+++.+|..+|.++...|++++|+..++++++. .|.+    +.+|..+|.+
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~~g~~   80 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDW----GKGYSRKAAA   80 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHh-ccch----hhHHHHHHHH
Confidence            3456888999999999999999999999999999999999999999999999999999999 9998    9999999999


Q ss_pred             HHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHH
Q 036703          136 EEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAF  174 (365)
Q Consensus       136 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  174 (365)
                      +.   ..|++++|+..|+++++..|++  ..++..+..+
T Consensus        81 ~~---~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~l  114 (117)
T d1elwa_          81 LE---FLNRFEEAKRTYEEGLKHEANN--PQLKEGLQNM  114 (117)
T ss_dssp             HH---HTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHH
T ss_pred             HH---HccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Confidence            99   9999999999999999999997  4566655544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.8e-16  Score=136.60  Aligned_cols=229  Identities=7%  Similarity=-0.080  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 036703           38 GARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEI  116 (365)
Q Consensus        38 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  116 (365)
                      +|.+.|++|+++.|+ ...|..++.++...|++++|   |++++..+|+..........+.  ...+..+++.++...+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            566777777777777 56666677777766666654   6677777664443332211111  12244555666655544


Q ss_pred             hhcCChhhHHHHH-HHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHH
Q 036703          117 FLADDHDEAEQLF-VAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQ  195 (365)
Q Consensus       117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  195 (365)
                       ....  ...... ...+.+..   ..+.++.|+..+++++...|..  ...+..++......|+..        .|...
T Consensus        79 -~~~~--~~~~~~~~~~~~l~~---a~~~Y~~ai~~l~~~~~l~~~~--~~~~~~lg~~~~~~~~~~--------~A~~~  142 (497)
T d1ya0a1          79 -RANP--NRSEVQANLSLFLEA---ASGFYTQLLQELCTVFNVDLPC--RVKSSQLGIISNKQTHTS--------AIVKP  142 (497)
T ss_dssp             -SSCT--TTTHHHHHHHHHHHH---HHHHHHHHHHHHTC-----------------------------------------
T ss_pred             -ccCc--cHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCChhh--HHHHHHhHHHHHhCCCHH--------HHHHH
Confidence             2211  001111 11233344   5566666666666666655543  344555555554555433        45566


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHH
Q 036703          196 YEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYR  275 (365)
Q Consensus       196 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  275 (365)
                      +.+++..+|  ..++..+|.++...|++++|+..|++++...|+++.         .+..+|.++ ...|+..+|+..|.
T Consensus       143 ~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~---------~~~~Lg~~~-~~~~~~~~A~~~y~  210 (497)
T d1ya0a1         143 QSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ---------PYNQLAILA-SSKGDHLTTIFYYC  210 (497)
T ss_dssp             CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH---------HHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred             HHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchH---------HHHHHHHHH-HHcCCHHHHHHHHH
Confidence            666665544  245666677766677777777777777777776643         566666665 46677777777777


Q ss_pred             HHHhccccCCCcchhHHHHHHHHHHHHHhC
Q 036703          276 TLFIFYFSFSPRMEERRIFKKYIEMELCLG  305 (365)
Q Consensus       276 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
                      +++...+      |-+..+.+++.++.+..
T Consensus       211 ral~~~~------~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         211 RSIAVKF------PFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHSSSB------CCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCC------CCHHHHHHHHHHHHHhh
Confidence            7766653      22555566655554433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.7e-14  Score=105.20  Aligned_cols=109  Identities=12%  Similarity=0.094  Sum_probs=98.5

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      +|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|+ ..+|..+|.++...|++++|...|+++
T Consensus        25 ~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a  104 (159)
T d1a17a_          25 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETV  104 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5889999999999999999999999999999999999999999999999999 799999999999999999999999999


Q ss_pred             HHhCCcchHHHHHHHHHHHh--hcchHHHHHH
Q 036703           80 VQCHPYNLSAWINFADFEMK--MGEVDRARNV  109 (365)
Q Consensus        80 l~~~p~~~~~~~~~~~~~~~--~~~~~~A~~~  109 (365)
                      +..+|+++.++..++.+...  .+.+++|...
T Consensus       105 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_         105 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999998888776543  3345555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-15  Score=132.77  Aligned_cols=223  Identities=8%  Similarity=-0.058  Sum_probs=147.1

Q ss_pred             hHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 036703            4 HGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQC   82 (365)
Q Consensus         4 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~   82 (365)
                      +|.+.|++|+++.|+.+++|..+|.++...|++++|   |++++..+|+ .........+ . ...+..+.+.+++..+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~L-w-~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL-W-NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHH-H-HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHH-H-HHHHHHHHHHHHHhccc
Confidence            689999999999999999999999999999998876   8999999987 2222111111 1 12345677778777764


Q ss_pred             CC--cchHHHHH-HHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccC
Q 036703           83 HP--YNLSAWIN-FADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRI  159 (365)
Q Consensus        83 ~p--~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  159 (365)
                      ..  +....... .+.+....+.++.|+..+.++... .|.+    ...+..+|..+.   ..|+.++|...+++++...
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l-~~~~----~~~~~~lg~~~~---~~~~~~~A~~~~~~al~~~  150 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV-DLPC----RVKSSQLGIISN---KQTHTSAIVKPQSSSCSYI  150 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------------CCHHHHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-Chhh----HHHHHHhHHHHH---hCCCHHHHHHHHHHHhCCC
Confidence            43  22222222 334455577888888888888888 7776    888999999999   9999999999999998765


Q ss_pred             CCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 036703          160 PKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPP  239 (365)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  239 (365)
                      |.    ..+..++.++...|+++        +|+..|+++++.+|++..++..+|.++...|+..+|+..|.+++...|+
T Consensus       151 ~~----~~~~~LG~l~~~~~~~~--------~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~  218 (497)
T d1ya0a1         151 CQ----HCLVHLGDIARYRNQTS--------QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP  218 (497)
T ss_dssp             HH----HHHHHHHHHHHHTTCHH--------HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred             HH----HHHHHHHHHHHHcccHH--------HHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence            43    46777888888888865        7999999999999999999999999999999999999999999999888


Q ss_pred             chhhhHHHHhHHHHHHHHHHH
Q 036703          240 AEEKRYWQRYIYLWINYALYK  260 (365)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~  260 (365)
                      .+.         .+.+++..+
T Consensus       219 ~~~---------a~~nL~~~~  230 (497)
T d1ya0a1         219 FPA---------ASTNLQKAL  230 (497)
T ss_dssp             CHH---------HHHHHHHHH
T ss_pred             CHH---------HHHHHHHHH
Confidence            754         555555554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-14  Score=107.57  Aligned_cols=137  Identities=14%  Similarity=0.013  Sum_probs=117.8

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      +++.|+..|++   +.|.++.+|..+|.++...|++++|+..|+++++++|+ ..+|..+|.++...|++++|...|+++
T Consensus        20 d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kA   96 (192)
T d1hh8a_          20 DWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA   96 (192)
T ss_dssp             CHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHH
Confidence            47788888875   35666899999999999999999999999999999999 899999999999999999999999999


Q ss_pred             HHhCCcc----------------hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccc
Q 036703           80 VQCHPYN----------------LSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCK  143 (365)
Q Consensus        80 l~~~p~~----------------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (365)
                      +...|.+                ..++..+|.++...|++++|.+.+.++++. .|..                   ..+
T Consensus        97 l~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~-~~~~-------------------~~~  156 (192)
T d1hh8a_          97 LIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM-KSEP-------------------RHS  156 (192)
T ss_dssp             HHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCSG-------------------GGG
T ss_pred             HHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCc-------------------chH
Confidence            9865432                367889999999999999999999999999 8775                   566


Q ss_pred             hhHHHHHHHHHHhccCC
Q 036703          144 ETDRARCIYKFALDRIP  160 (365)
Q Consensus       144 ~~~~A~~~~~~~l~~~p  160 (365)
                      ..+.|+..+.+.....|
T Consensus       157 ~~~~Al~~~~~~~~~~~  173 (192)
T d1hh8a_         157 KIDKAMECVWKQKLYEP  173 (192)
T ss_dssp             HHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHhhhhCCc
Confidence            66777777766655544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.8e-14  Score=109.76  Aligned_cols=101  Identities=12%  Similarity=0.019  Sum_probs=94.5

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      .......|..+...|++++|+..|+++++.+|+ +.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++.
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            555778899999999999999999999999999 8899999999999999999999999999999999999999999999


Q ss_pred             hhcchHHHHHHHHHHHhhhhcCC
Q 036703           99 KMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        99 ~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      ..|++++|+..|+++++. .|..
T Consensus        84 ~l~~~~~A~~~~~~al~l-~p~~  105 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSL-AKEQ  105 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHH-HHHT
T ss_pred             HCCCHHHHHHHHHHHHHh-Cccc
Confidence            999999999999999998 7754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.57  E-value=3.5e-14  Score=96.55  Aligned_cols=94  Identities=15%  Similarity=0.031  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK   99 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~   99 (365)
                      ..++..|..+.+.|++++|+..|+++++.+|+ +.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            44678899999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHHHHH
Q 036703          100 MGEVDRARNVYECAV  114 (365)
Q Consensus       100 ~~~~~~A~~~~~~a~  114 (365)
                      .|++++|++.+++.+
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999875

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.53  E-value=1.1e-13  Score=94.07  Aligned_cols=95  Identities=18%  Similarity=0.085  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFA  133 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  133 (365)
                      ..+...|..+.+.|++++|+..|++++..+|+++.+|..+|.++.+.|++++|+..|+++++. .|.+    ..+|..+|
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~----~~a~~~la   91 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKD----IAVHAALA   91 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc-cccc----ccchHHHH
Confidence            456788999999999999999999999999999999999999999999999999999999999 9998    99999999


Q ss_pred             HHHHhccccchhHHHHHHHHHHh
Q 036703          134 KFEEMGCNCKETDRARCIYKFAL  156 (365)
Q Consensus       134 ~~~~~~~~~~~~~~A~~~~~~~l  156 (365)
                      .++.   ..|++++|++.+++.|
T Consensus        92 ~~y~---~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          92 VSHT---NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHH---HCCCHHHHHHHHHHHh
Confidence            9999   9999999999999876

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=6.5e-14  Score=106.59  Aligned_cols=104  Identities=13%  Similarity=0.053  Sum_probs=98.1

Q ss_pred             CCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703           50 MPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLF  129 (365)
Q Consensus        50 ~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  129 (365)
                      .|+.......|..+...|++++|+..|.+++..+|+++.+|..+|.++.+.|++++|+..|+++++. .|.+    ...|
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-~p~~----~~a~   75 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQS----VKAH   75 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTC----HHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-CCCc----HHHH
Confidence            3666667788999999999999999999999999999999999999999999999999999999999 9988    9999


Q ss_pred             HHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703          130 VAFAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                      ..+|.++.   ..|++++|+..|++++...|.
T Consensus        76 ~~lg~~~~---~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          76 FFLGQCQL---EMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHHHHHHH---HTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HCCCHHHHHHHHHHHHHhCcc
Confidence            99999999   999999999999999987664

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-12  Score=95.55  Aligned_cols=120  Identities=8%  Similarity=0.128  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----------------HEGWLSYIKFKLRYNEVQRARHIFERLVQCH   83 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~   83 (365)
                      ...+...|..+...|++++|+..|++++...|.                ..++..++.++.+.|++++|+..+++++..+
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            445667899999999999999999999998774                1356678899999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHH
Q 036703           84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDR  147 (365)
Q Consensus        84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (365)
                      |+++.++..+|.++...|++++|+..|+++++. .|++    +.+...++.+..   ..+...+
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~P~n----~~~~~~l~~~~~---~~~~~~~  148 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNN----KAAKTQLAVCQQ---RIRRQLA  148 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSC----HHHHHHHHHHHH---HHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HHHHHHH
Confidence            999999999999999999999999999999999 9998    888888888776   5554443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-13  Score=93.96  Aligned_cols=96  Identities=10%  Similarity=-0.016  Sum_probs=52.8

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC---ChhHHHHHHHHHHhhCCC---hHHHHHHHHHHHHhccHHHHHHH
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLG---NVAGARQIFERWMHWMPD---HEGWLSYIKFKLRYNEVQRARHI   75 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~A~~~   75 (365)
                      +++|.+.|++++..+|+++.+++.+|.++...+   ++++|+..|++++..+|.   ..+|..+|.++...|++++|+..
T Consensus        15 l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~   94 (122)
T d1nzna_          15 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   94 (122)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            445555666666666665566666665555433   233455556665555554   23555555555566666666666


Q ss_pred             HHHHHHhCCcchHHHHHHHHHH
Q 036703           76 FERLVQCHPYNLSAWINFADFE   97 (365)
Q Consensus        76 ~~~~l~~~p~~~~~~~~~~~~~   97 (365)
                      |+++++.+|++..+......+.
T Consensus        95 ~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          95 VRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCcCCHHHHHHHHHHH
Confidence            6666666665555554444433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.47  E-value=3.9e-13  Score=95.77  Aligned_cols=97  Identities=13%  Similarity=0.073  Sum_probs=82.9

Q ss_pred             hhhHHHHHHHHHHhCCCchHHHHHHHHHHHhc----------CChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhc---
Q 036703            2 IDHGRNAWDRVVTLSPRVDQLWNNYIRMEENL----------GNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYN---   67 (365)
Q Consensus         2 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~----------g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~---   67 (365)
                      |++|+..|+++++.+|+++.++..+|.++...          +.+++|+..|+++++++|+ ..+|..+|.++...|   
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~   92 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   92 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch
Confidence            78999999999999999999999999998854          4457899999999999999 788999998887665   


Q ss_pred             --------cHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           68 --------EVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        68 --------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                              .+++|...|+++++.+|++...+..++....
T Consensus        93 ~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~k  131 (145)
T d1zu2a1          93 PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK  131 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             hhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHH
Confidence                    4688999999999999988887777666643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.8e-13  Score=91.03  Aligned_cols=100  Identities=11%  Similarity=0.077  Sum_probs=81.3

Q ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh---cchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHH
Q 036703           58 SYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKM---GEVDRARNVYECAVEIFLADDHDEAEQLFVAFAK  134 (365)
Q Consensus        58 ~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~  134 (365)
                      .++..+...+++++|++.|++++..+|+++.+++.+|.++.+.   +++++|+.+|++++.. .|.+  ....+|+.+|.
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~--~~~~~~~~Lg~   80 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKE--EQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHH--HHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCc--hHHHHHHHHHH
Confidence            4566677888899999999999999999999999999888763   4566789999998887 5542  23558888999


Q ss_pred             HHHhccccchhHHHHHHHHHHhccCCCch
Q 036703          135 FEEMGCNCKETDRARCIYKFALDRIPKGR  163 (365)
Q Consensus       135 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  163 (365)
                      +|.   ..|++++|++.|+++++..|++.
T Consensus        81 ~y~---~~g~~~~A~~~~~~aL~~~P~~~  106 (122)
T d1nzna_          81 GNY---RLKEYEKALKYVRGLLQTEPQNN  106 (122)
T ss_dssp             HHH---HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHH---HHhhhHHHHHHHHHHHHhCcCCH
Confidence            998   89999999999999999888874

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.5e-12  Score=92.12  Aligned_cols=128  Identities=9%  Similarity=0.080  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhh------hHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc
Q 036703          208 DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEK------RYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY  281 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~  281 (365)
                      ..+...|..+...|++++|+..|++++...|.....      ..-.....++.++|.++ ...|++++|+..+++++..+
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y-~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH-LKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHH-Hhhhhcccccchhhhhhhcc
Confidence            456678889999999999999999999987764320      11111234667788887 69999999999999999998


Q ss_pred             ccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhH
Q 036703          282 FSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETER  343 (365)
Q Consensus       282 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  343 (365)
                             |+ +..+...|.++...|++++|+..|+++++++|+++.+...++.+....+...+
T Consensus        93 -------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~  148 (170)
T d1p5qa1          93 -------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA  148 (170)
T ss_dssp             -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence                   55 78889999999999999999999999999999999999999998877665443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.41  E-value=6.8e-12  Score=90.25  Aligned_cols=113  Identities=8%  Similarity=0.010  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-----------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-----------------HEGWLSYIKFKLRYNEVQRARHIFERLVQC   82 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~   82 (365)
                      ...+..-|..+...|++.+|+..|.+++...|.                 ..++..+|.++.+.|++++|+..+.+++..
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            345667889999999999999999999987653                 125667889999999999999999999999


Q ss_pred             CCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           83 HPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        83 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      +|+++.+|..+|.++...|++++|+..|+++++. .|++    ..+...+..+..
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l-~P~n----~~~~~~l~~~~~  146 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-NPNN----LDIRNSYELCVN  146 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999 9998    878777766654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7.6e-12  Score=87.03  Aligned_cols=104  Identities=13%  Similarity=0.133  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC---hhhHHHHHHH
Q 036703           55 GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD---HDEAEQLFVA  131 (365)
Q Consensus        55 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~~  131 (365)
                      .+...|..+...|++++|+..|.++++.+|+++.++..+|.++.+.|++++|+..++++++. .|.+   ......++..
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l-~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-GRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh-CcccHHHHHHHHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999999998 7665   1222356777


Q ss_pred             HHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703          132 FAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       132 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      +|.++.   ..+++++|+..|++++...+..
T Consensus        85 lg~~~~---~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          85 IGNSYF---KEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             HHHHHH---HTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHH---HhCCHHHHHHHHHHHHhcCCCH
Confidence            888888   8999999999999999877653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.40  E-value=1.3e-11  Score=90.37  Aligned_cols=129  Identities=14%  Similarity=0.187  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC----------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD----------------HEGWLSYIKFKLRYNEVQRARHIFERLVQCH   83 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~   83 (365)
                      ...+...|..+...|++.+|+..|.+++...|.                ..++..++.++...|++++|+..+++++..+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            456778899999999999999999999975443                1345668889999999999999999999999


Q ss_pred             CcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhH-HHHHHHHHHh
Q 036703           84 PYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETD-RARCIYKFAL  156 (365)
Q Consensus        84 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~~l  156 (365)
                      |+++.++..+|.++...|++++|+..|+++++. .|++    ..++..++.+..   ..+... ...+.|.+.+
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l-~P~n----~~~~~~l~~~~~---~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-NPQN----KAARLQIFMCQK---KAKEHNERDRRTYANMF  160 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTC----HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HHHhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999 9998    888888888776   555443 3444444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.40  E-value=2.9e-12  Score=91.14  Aligned_cols=103  Identities=16%  Similarity=0.081  Sum_probs=89.5

Q ss_pred             HHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHh----------ccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           30 EENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRY----------NEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        30 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~----------~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      +.+.+.+++|+..|+++++.+|+ ..++..+|.++...          +.+++|+..|+++++++|+++.+|..+|.++.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            45667799999999999999999 88999999888744          45688999999999999999999999999998


Q ss_pred             hhcc-----------hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHH
Q 036703           99 KMGE-----------VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEE  137 (365)
Q Consensus        99 ~~~~-----------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  137 (365)
                      ..|+           +++|.+.|+++++. .|++    ...+..++....
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l-~P~~----~~~~~~L~~~~k  131 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDE-QPDN----THYLKSLEMTAK  131 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHT
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhccccc-CCCH----HHHHHHHHHHHH
Confidence            7764           68999999999999 9988    777776666555

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.39  E-value=6.1e-12  Score=92.36  Aligned_cols=117  Identities=19%  Similarity=0.107  Sum_probs=101.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhC----------------CC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWM----------------PD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPY   85 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~   85 (365)
                      ....|..+...|++.+|+..|.++++..                |. ...|..++.++.+.|++++|+..|.++++.+|+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            4566888889999999999999998643                22 456788899999999999999999999999999


Q ss_pred             chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHH
Q 036703           86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDR  147 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (365)
                      ++.+|..+|.++...|++++|+..|+++++. .|++    ..+...+..+..   ......+
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-~p~n----~~~~~~l~~~~~---~l~~~~~  163 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQEI-APED----KAIQAELLKVKQ---KIKAQKD  163 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC----HHHHHHHHHHHH---HHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHH---HHHHHHH
Confidence            9999999999999999999999999999999 9998    888888887776   5444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.1e-11  Score=86.24  Aligned_cols=99  Identities=9%  Similarity=0.038  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchH-------HHHH
Q 036703           21 QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLS-------AWIN   92 (365)
Q Consensus        21 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~   92 (365)
                      ..+..+|..+...|++++|+..|.++++++|+ ..+|..++.++...|++++|+..++++++.+|.++.       ++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999 789999999999999999999999999999987765       4555


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhhhcC
Q 036703           93 FADFEMKMGEVDRARNVYECAVEIFLAD  120 (365)
Q Consensus        93 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~  120 (365)
                      +|.++...+++++|+..|++++.. .+.
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~-~~~  111 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAE-HRT  111 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-CCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhc-CCC
Confidence            666777778999999999999887 654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=5.3e-12  Score=92.68  Aligned_cols=106  Identities=9%  Similarity=0.022  Sum_probs=94.5

Q ss_pred             ChhhHHHHHHHHHHh----------------CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTL----------------SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFK   63 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~----------------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~   63 (365)
                      +|++|+..|+++++.                .|....+|..+|.++.+.|++++|+..|.++++++|+ ..+|..+|.++
T Consensus        42 ~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~  121 (169)
T d1ihga1          42 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW  121 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHH
Confidence            477888999888753                4666778899999999999999999999999999999 89999999999


Q ss_pred             HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHH
Q 036703           64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRA  106 (365)
Q Consensus        64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A  106 (365)
                      ...|+++.|+..|+++++.+|++..+...++.+........++
T Consensus       122 ~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1         122 QGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988887776655544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.35  E-value=1.8e-09  Score=85.28  Aligned_cols=231  Identities=10%  Similarity=-0.015  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh----hcchHHHHHHHHHHHhhhhcCChhhHHHHH
Q 036703           54 EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMK----MGEVDRARNVYECAVEIFLADDHDEAEQLF  129 (365)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  129 (365)
                      ..|+.+|..+...+|+++|...|+++.+.  ++..++..+|.++..    ..++..|...++.+... .  .    +...
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-~--~----~~a~   73 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N--Y----SNGC   73 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T--C----HHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-c--c----cchh
Confidence            34555555555555556666666555443  345555555655554    33555566555555544 1  1    3344


Q ss_pred             HHHHHHHHhc-cccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHH
Q 036703          130 VAFAKFEEMG-CNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYD  208 (365)
Q Consensus       130 ~~~~~~~~~~-~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~  208 (365)
                      ..++.++... ....+.+.|...++++....+..    ....++...........    ....+...+.+...  +.+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~----a~~~l~~~~~~~~~~~~----~~~~a~~~~~~~~~--~~~~~  143 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE----GCASLGGIYHDGKVVTR----DFKKAVEYFTKACD--LNDGD  143 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHCSSSCC----CHHHHHHHHHHHHH--TTCHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhhh----HHHhhcccccCCCcccc----hhHHHHHHhhhhhc--ccccc
Confidence            4444443300 01234555666666655543322    11111111111110000    01133444443332  45556


Q ss_pred             HHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhh---ccCChhHHHHHHHHHHhcc
Q 036703          209 TWFDYIRLEER----VGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEV---DAGDLERTRDVYRTLFIFY  281 (365)
Q Consensus       209 ~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~a~~~~  281 (365)
                      .+..++..+..    ..+...+...++.+.+..  ++         .....+|.++..   ...++++|+..|+++.+..
T Consensus       144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g--~~---------~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g  212 (265)
T d1ouva_         144 GCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DS---------PGCFNAGNMYHHGEGATKNFKEALARYSKACELE  212 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH---------HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhccCCCcccccccchhhhhcccccc--cc---------ccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence            66777776654    345566666666666532  21         144445554421   1356777888888877762


Q ss_pred             ccCCCcchhHHHHHHHHHHHHH----hCCCccHHHHHHHHHhhCc
Q 036703          282 FSFSPRMEERRIFKKYIEMELC----LGNIDPCRKLYEKYLEWSP  322 (365)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p  322 (365)
                              .+.....+|.++..    ..++++|.++|+++....+
T Consensus       213 --------~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         213 --------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             --------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             --------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence                    24455667777764    3377888888888877764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.35  E-value=2.2e-11  Score=89.06  Aligned_cols=140  Identities=14%  Similarity=0.099  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh------hhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhcc
Q 036703          208 DTWFDYIRLEERVGNQERVREVYERAIANVPPAEE------KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFY  281 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~  281 (365)
                      ..+...|..+...|++.+|+..|++++...|....      ...-.....++.++|.++ ...|++++|+..++++++.+
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~-~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY-LKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHH-HHhhhcccchhhhhhhhhcc
Confidence            45667888999999999999999999986544321      011111244677788887 69999999999999999998


Q ss_pred             ccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccch-hHHHHHHHHHhcCc
Q 036703          282 FSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDET-ERARAIFELAIAQP  355 (365)
Q Consensus       282 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~-~~A~~~~~~a~~~~  355 (365)
                             |+ +..+...|.++...|++++|+..|+++++++|++..++..++.+....+.. +..++.|.++.+..
T Consensus        95 -------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~~~  163 (168)
T d1kt1a1          95 -------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKF  163 (168)
T ss_dssp             -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence                   55 778899999999999999999999999999999999999999988777654 34556655555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.35  E-value=1.1e-11  Score=89.04  Aligned_cols=101  Identities=8%  Similarity=0.015  Sum_probs=90.4

Q ss_pred             ChhhHHHHHHHHHHhCCCch----------------HHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVD----------------QLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFK   63 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~----------------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~   63 (365)
                      +|.+|+..|++++...|...                .++..+|.++.+.|++++|+..++++++.+|+ ..+|...|.++
T Consensus        32 ~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~  111 (153)
T d2fbna1          32 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN  111 (153)
T ss_dssp             CHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHH
Confidence            57899999999998765432                35677999999999999999999999999999 89999999999


Q ss_pred             HHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc
Q 036703           64 LRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMG  101 (365)
Q Consensus        64 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  101 (365)
                      ...|++++|+..|+++++++|++..+...+..+..+.+
T Consensus       112 ~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         112 MYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988887766544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.33  E-value=7.1e-10  Score=87.65  Aligned_cols=230  Identities=10%  Similarity=0.004  Sum_probs=166.3

Q ss_pred             chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHhccCCC
Q 036703           86 NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCN----CKETDRARCIYKFALDRIPK  161 (365)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~p~  161 (365)
                      ||..++.+|..+...+++++|++.|+++.+. .  +    ...+..+|.++.   .    ..++..|...++.+......
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g--~----~~A~~~Lg~~y~---~G~~~~~d~~~a~~~~~~a~~~~~~   70 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-K--E----NSGCFNLGVLYY---QGQGVEKNLKKAASFYAKACDLNYS   70 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T--C----HHHHHHHHHHHH---HTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C--C----HHHHHHHHHHHH---cCCCcchhHHHHHHhhccccccccc
Confidence            5789999999999999999999999999766 2  3    778889999988   5    56899999999998875432


Q ss_pred             chhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcC
Q 036703          162 GRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEER----VGNQERVREVYERAIANV  237 (365)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~  237 (365)
                          .....++.+.........    ....|...++++....+  ..+...++..+..    ......+...+.+.....
T Consensus        71 ----~a~~~l~~~~~~~~~~~~----~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~  140 (265)
T d1ouva_          71 ----NGCHLLGNLYYSGQGVSQ----NTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN  140 (265)
T ss_dssp             ----HHHHHHHHHHHHTSSSCC----CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             ----chhhccccccccccccch----hhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc
Confidence                334444444433211111    13368888998887644  4455555555543    456777778887776644


Q ss_pred             CCchhhhHHHHhHHHHHHHHHHHhh---ccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHH----hCCCccH
Q 036703          238 PPAEEKRYWQRYIYLWINYALYKEV---DAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELC----LGNIDPC  310 (365)
Q Consensus       238 p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A  310 (365)
                      ...           .+..++.++..   ...+...+...++.+.+.        .++.....+|.++..    ..++++|
T Consensus       141 ~~~-----------~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--------g~~~A~~~lg~~y~~g~~~~~d~~~A  201 (265)
T d1ouva_         141 DGD-----------GCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNAGNMYHHGEGATKNFKEA  201 (265)
T ss_dssp             CHH-----------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             ccc-----------hhhhhhhhhccCCCcccccccchhhhhccccc--------cccccccchhhhcccCcccccchhhh
Confidence            332           45556666532   345677888888888875        446677788888876    5689999


Q ss_pred             HHHHHHHHhhCcchHHHHHHHHHHHhh----ccchhHHHHHHHHHhcCcC
Q 036703          311 RKLYEKYLEWSPENCYAWSKYTELEKS----LDETERARAIFELAIAQPI  356 (365)
Q Consensus       311 ~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~  356 (365)
                      +.+|+++.+..  ++.++..+|.++..    ..+.++|...|+++.+...
T Consensus       202 ~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         202 LARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            99999998874  68899999999985    3379999999999987654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.3e-10  Score=72.76  Aligned_cols=81  Identities=11%  Similarity=0.013  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC--------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPD--------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWI   91 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   91 (365)
                      ++-.+.+|..+.+.|++++|+..|++|++..|.        ..++..+|.++.+.|++++|+..|+++++.+|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            455778899999999999999999999887543        357788889999999999999999999999999888888


Q ss_pred             HHHHHHHhh
Q 036703           92 NFADFEMKM  100 (365)
Q Consensus        92 ~~~~~~~~~  100 (365)
                      .++.+....
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            877665543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.08  E-value=1.3e-10  Score=90.93  Aligned_cols=127  Identities=9%  Similarity=-0.012  Sum_probs=99.5

Q ss_pred             HHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcchHHHH
Q 036703           29 MEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGEVDRAR  107 (365)
Q Consensus        29 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~  107 (365)
                      -.++.|++++|+..++++++.+|+ ...+..++.++...|++++|...|+++++.+|++...+..++.++...+..+++.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            456779999999999999999998 7889999999999999999999999999999988999888888887766665554


Q ss_pred             HHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCc
Q 036703          108 NVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKG  162 (365)
Q Consensus       108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  162 (365)
                      ..+.+.... .+   +.....+...+..+.   ..|+.++|...++++.+..|..
T Consensus        85 ~~~~~~~~~-~~---p~~~~~~l~~a~~~~---~~gd~~~A~~~~~~a~e~~p~~  132 (264)
T d1zbpa1          85 QGAATAKVL-GE---NEELTKSLVSFNLSM---VSQDYEQVSELALQIEELRQEK  132 (264)
T ss_dssp             TSCCCEECC-CS---CHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HHhhhhhcc-cC---chHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHhcCCCC
Confidence            433332222 11   223566667777788   8899999999999998887764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.5e-10  Score=73.11  Aligned_cols=85  Identities=14%  Similarity=0.015  Sum_probs=72.0

Q ss_pred             HHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHH
Q 036703          253 WINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKY  331 (365)
Q Consensus       253 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  331 (365)
                      +...|..+ ...|++++|+..|+++++..+.....+++ .+++..+|.++.+.|++++|+..|+++++++|+++.++.++
T Consensus         8 c~~lG~~~-~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl   86 (95)
T d1tjca_           8 SFELGKVA-YTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (95)
T ss_dssp             HHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHH-HHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            44566665 58999999999999999987655443344 78899999999999999999999999999999999999998


Q ss_pred             HHHHhhc
Q 036703          332 TELEKSL  338 (365)
Q Consensus       332 ~~~~~~~  338 (365)
                      +.++...
T Consensus        87 ~~~~~~l   93 (95)
T d1tjca_          87 KYFEYIM   93 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8776544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.08  E-value=1.8e-10  Score=90.12  Aligned_cols=120  Identities=10%  Similarity=0.061  Sum_probs=101.5

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hHHHHHHHHHHHHhccHHHHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPD-HEGWLSYIKFKLRYNEVQRARHIFERL   79 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~A~~~~~~~   79 (365)
                      ++++|+..|+++++.+|++..++..++.++...|++++|+..|+++++.+|+ ...+..++.+....+..+++...+.+.
T Consensus        11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~   90 (264)
T d1zbpa1          11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATA   90 (264)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCCCE
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhhhh
Confidence            5789999999999999999999999999999999999999999999999999 678888888877666665554443332


Q ss_pred             -HHhCCcchHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           80 -VQCHPYNLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        80 -l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                       +...|.....+...+......|+.++|...++++.+. .|..
T Consensus        91 ~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~-~p~~  132 (264)
T d1zbpa1          91 KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL-RQEK  132 (264)
T ss_dssp             ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCC
T ss_pred             hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCC
Confidence             2235656677777888899999999999999999999 8775

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.03  E-value=1.7e-09  Score=77.79  Aligned_cols=101  Identities=13%  Similarity=-0.001  Sum_probs=84.9

Q ss_pred             hHHHHHH--HHHHHhcCChhHHHHHHHHHHhhCCC-------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Q 036703           20 DQLWNNY--IRMEENLGNVAGARQIFERWMHWMPD-------------HEGWLSYIKFKLRYNEVQRARHIFERLVQCHP   84 (365)
Q Consensus        20 ~~~~~~~--~~~~~~~g~~~~A~~~~~~al~~~p~-------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p   84 (365)
                      ..++..+  |..+...|++++|+..|++++++.|+             ...|..++.++...|++++|...+++++...|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            3455544  77888999999999999999998775             14678899999999999999999999998654


Q ss_pred             c-----------chHHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC
Q 036703           85 Y-----------NLSAWINFADFEMKMGEVDRARNVYECAVEIFLADD  121 (365)
Q Consensus        85 ~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~  121 (365)
                      .           ...++..+|.++...|++++|+..|+++++. .|..
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l-~~~~  133 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM-IEER  133 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHC
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh-hHHh
Confidence            2           2346788999999999999999999999998 7654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.96  E-value=2.2e-09  Score=77.19  Aligned_cols=98  Identities=12%  Similarity=-0.017  Sum_probs=83.0

Q ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCcch------------HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCC------
Q 036703           60 IKFKLRYNEVQRARHIFERLVQCHPYNL------------SAWINFADFEMKMGEVDRARNVYECAVEIFLADD------  121 (365)
Q Consensus        60 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------  121 (365)
                      +..+...|++++|+..|++++++.|+.+            .+|..+|.++...|++++|...++++++. .|..      
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~-~~~~~~~~~~   94 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY-FNRRGELNQD   94 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHCCTTST
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc-cccccccccc
Confidence            6677888999999999999999887643            57889999999999999999999999987 5421      


Q ss_pred             -hhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCC
Q 036703          122 -HDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPK  161 (365)
Q Consensus       122 -~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~  161 (365)
                       .+....++..+|.++.   ..|++++|+..|+++++..|.
T Consensus        95 ~~~~~~~a~~~~g~~~~---~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          95 EGKLWISAVYSRALALD---GLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHhhHH
Confidence             2233557889999999   999999999999999987554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.91  E-value=1.9e-08  Score=73.52  Aligned_cols=117  Identities=10%  Similarity=-0.099  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCCh-HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           20 DQLWNNYIRMEENLGNVAGARQIFERWMHWMPDH-EGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      ...+...|......|++++|...|.+++.+.+.. ..+...            ...+........+....++..++..+.
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~------------~~w~~~~r~~l~~~~~~a~~~la~~~~   78 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD------------FQFVEPFATALVEDKVLAHTAKAEAEI   78 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT------------STTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778888899999999999999999988762 111100            011112223344445678888999999


Q ss_pred             hhcchHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 036703           99 KMGEVDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFAL  156 (365)
Q Consensus        99 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l  156 (365)
                      ..|++++|+..+++++.. .|.+    ..+|..++..+.   ..|+..+|+..|+++.
T Consensus        79 ~~g~~~~Al~~~~~al~~-~P~~----e~~~~~l~~al~---~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          79 ACGRASAVIAELEALTFE-HPYR----EPLWTQLITAYY---LSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HTTCHHHHHHHHHHHHHH-STTC----HHHHHHHHHHHH---TTTCHHHHHHHHHHHH
T ss_pred             HCCCchHHHHHHHHHHHh-CCcc----HHHHHHHHHHHH---HhcCHHHHHHHHHHHH
Confidence            999999999999999999 8888    999999999999   9999999999998874

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=2.3e-08  Score=73.13  Aligned_cols=116  Identities=10%  Similarity=-0.035  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCc
Q 036703          208 DTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPR  287 (365)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~  287 (365)
                      ..+...|......|++++|...|.+++...+...-..                 ...+..  +.   .......      
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~-----------------~~~~~w--~~---~~r~~l~------   63 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD-----------------LRDFQF--VE---PFATALV------   63 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-----------------GTTSTT--HH---HHHHHHH------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc-----------------CcchHH--HH---HHHHHHH------
Confidence            4566778888899999999999999999887653110                 011110  10   1111111      


Q ss_pred             chh-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHh
Q 036703          288 MEE-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAI  352 (365)
Q Consensus       288 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  352 (365)
                       +. ...+..++..+...|++++|...+++++..+|.+..+|..++..+...|+..+|...|+++.
T Consensus        64 -~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          64 -EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence             22 55677888888999999999999999999999999999999999999999999999998873

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=2.6e-06  Score=56.36  Aligned_cols=71  Identities=13%  Similarity=-0.065  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHhcC---ChhHHHHHHHHHHhhCCC--hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHH
Q 036703           20 DQLWNNYIRMEENLG---NVAGARQIFERWMHWMPD--HEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAW   90 (365)
Q Consensus        20 ~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   90 (365)
                      ....+.+|-++.+..   +.++++.+++.+++.+|.  .+.|..+|-.+.+.|++++|+..++++++++|++..+.
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            444555555554432   233455555555555554  24555555555555555555555555555555554443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.13  E-value=2.4e-05  Score=51.61  Aligned_cols=76  Identities=12%  Similarity=0.063  Sum_probs=64.7

Q ss_pred             CCChHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhCCcch-HHHHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhH
Q 036703           50 MPDHEGWLSYIKFKLRY---NEVQRARHIFERLVQCHPYNL-SAWINFADFEMKMGEVDRARNVYECAVEIFLADDHDEA  125 (365)
Q Consensus        50 ~p~~~~~~~~~~~~~~~---~~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  125 (365)
                      .|+..+.+.+|-++.+.   ++.++++.+|+.++..+|.+. +.+..+|..+.+.|++++|+..++++++. .|.+    
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i-eP~n----  106 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-ERNN----  106 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTC----
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc-CCCc----
Confidence            34467888888877754   577899999999999999764 79999999999999999999999999999 9998    


Q ss_pred             HHHHH
Q 036703          126 EQLFV  130 (365)
Q Consensus       126 ~~~~~  130 (365)
                      ..+..
T Consensus       107 ~qA~~  111 (124)
T d2pqrb1         107 KQVGA  111 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.06  E-value=4.6e-05  Score=52.16  Aligned_cols=112  Identities=7%  Similarity=-0.054  Sum_probs=84.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHH
Q 036703          221 GNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEM  300 (365)
Q Consensus       221 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  300 (365)
                      .|+++|+..|+++.+.....           ....++.   ....+.++|+..|+++.+.        -++.....++.+
T Consensus         7 kd~~~A~~~~~kaa~~g~~~-----------a~~~l~~---~~~~~~~~a~~~~~~aa~~--------g~~~a~~~Lg~~   64 (133)
T d1klxa_           7 KDLKKAIQYYVKACELNEMF-----------GCLSLVS---NSQINKQKLFQYLSKACEL--------NSGNGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT-----------HHHHHHT---CTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCChh-----------hhhhhcc---ccccCHHHHHHHHhhhhcc--------cchhhhhhHHHh
Confidence            36789999999998764332           2233332   3557899999999999886        335566778888


Q ss_pred             HHH----hCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhh----ccchhHHHHHHHHHhcCcC
Q 036703          301 ELC----LGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKS----LDETERARAIFELAIAQPI  356 (365)
Q Consensus       301 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~~  356 (365)
                      +..    ..++++|.++|+++.+..  ++.....++.++..    ..|.++|...|+++.++..
T Consensus        65 y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          65 YENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            765    456889999999998864  67888889988876    4579999999999987654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.99  E-value=0.00012  Score=49.90  Aligned_cols=109  Identities=8%  Similarity=0.037  Sum_probs=86.6

Q ss_pred             ChhhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHH----hccHHHHHHHH
Q 036703            1 FIDHGRNAWDRVVTLSPRVDQLWNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLR----YNEVQRARHIF   76 (365)
Q Consensus         1 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~----~~~~~~A~~~~   76 (365)
                      |+++|+..|+++.+..  ++.+...++.  ....+.++|...|+++.+.. ++.....++.++..    ..|+++|...|
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g-~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~   82 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAAQYY   82 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhccc-chhhhhhHHHhhhhccccchhhHHHHHHH
Confidence            4789999999998764  4556666664  34568899999999998742 36677788888765    45789999999


Q ss_pred             HHHHHhCCcchHHHHHHHHHHHh----hcchHHHHHHHHHHHhh
Q 036703           77 ERLVQCHPYNLSAWINFADFEMK----MGEVDRARNVYECAVEI  116 (365)
Q Consensus        77 ~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~~  116 (365)
                      +++.+..  ++.....++.+|..    ..+.++|...|+++.+.
T Consensus        83 ~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          83 SKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             hhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            9998764  57888899999887    35899999999999887

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.87  E-value=0.0036  Score=49.60  Aligned_cols=281  Identities=8%  Similarity=0.020  Sum_probs=147.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE  102 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  102 (365)
                      ....|..+...|.++.|..+|...       .-|..++.++.+.++++.|..++.++     +++.+|..+...+.+..+
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~-------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e   84 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE   84 (336)
T ss_dssp             ------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhC-------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcH
Confidence            345677788889999999888754       23555667778889999988877665     468899888888887766


Q ss_pred             hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCch
Q 036703          103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDRE  182 (365)
Q Consensus       103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  182 (365)
                      ..-|.-+ .  +.. . ..    +.-.......+.   ..|.+++...+++.++...+.+  ..++..++.++.+.+...
T Consensus        85 ~~la~i~-~--~~~-~-~~----~d~l~~~v~~ye---~~~~~e~Li~~Le~~~~~~~~~--~~~~~~L~~lyak~~~~k  150 (336)
T d1b89a_          85 FRLAQMC-G--LHI-V-VH----ADELEELINYYQ---DRGYFEELITMLEAALGLERAH--MGMFTELAILYSKFKPQK  150 (336)
T ss_dssp             HHHHHHT-T--TTT-T-TC----HHHHHHHHHHHH---HTTCHHHHHHHHHHHTTSTTCC--HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHH-H--HHh-h-cC----HHHHHHHHHHHH---HcCChHHHHHHHHHHHcCCccc--hHHHHHHHHHHHHhChHH
Confidence            5443211 1  111 1 11    334455677777   8899999999999988765543  556777777666554221


Q ss_pred             hhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHh------HHHHHHH
Q 036703          183 GIEDAIAGKMRLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRY------IYLWINY  256 (365)
Q Consensus       183 ~~~~~~~~~a~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~------~~~~~~~  256 (365)
                      ..+-.......--..+++..+. ....|-.+.-++.+.|++++|..+.-.-   .++......|...      ..+|...
T Consensus       151 l~e~l~~~s~~y~~~k~~~~c~-~~~l~~elv~Ly~~~~~~~~A~~~~i~~---~~~~~~~~~f~e~~~k~~N~e~~~~~  226 (336)
T d1b89a_         151 MREHLELFWSRVNIPKVLRAAE-QAHLWAELVFLYDKYEEYDNAIITMMNH---PTDAWKEGQFKDIITKVANVELYYRA  226 (336)
T ss_dssp             HHHHHHHHSTTSCHHHHHHHHH-TTTCHHHHHHHHHHTTCHHHHHHHHHHS---TTTTCCHHHHHHHHHHCSSTHHHHHH
T ss_pred             HHHHHHhccccCCHHHHHHHHH-HcCChHHHHHHHHhcCCHHHHHHHHHHc---chhhhhHHHHHHHHHccCChHHHHHH
Confidence            1110000000000111222111 1245677777888889888876654331   1111000000000      0122222


Q ss_pred             HHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHh
Q 036703          257 ALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEK  336 (365)
Q Consensus       257 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  336 (365)
                      ..++ ... .++-...++.......       +.    ...+....+.+++.-.+.+++...+.+  +..+...+..++.
T Consensus       227 i~~y-L~~-~p~~i~~lL~~v~~~~-------d~----~r~V~~~~k~~~l~li~p~Le~v~~~n--~~~vn~al~~lyi  291 (336)
T d1b89a_         227 IQFY-LEF-KPLLLNDLLMVLSPRL-------DH----TRAVNYFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFI  291 (336)
T ss_dssp             HHHH-HHH-CGGGHHHHHHHHGGGC-------CH----HHHHHHHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHH
T ss_pred             HHHH-HHc-CHHHHHHHHHHhccCC-------CH----HHHHHHHHhcCCcHHHHHHHHHHHHcC--hHHHHHHHHHHHh
Confidence            2222 111 1222222222211111       11    233445567889999999998876543  5578889999999


Q ss_pred             hccchhHHHHHH
Q 036703          337 SLDETERARAIF  348 (365)
Q Consensus       337 ~~g~~~~A~~~~  348 (365)
                      ..+|++.-+...
T Consensus       292 e~~d~~~l~~~i  303 (336)
T d1b89a_         292 TEEDYQALRTSI  303 (336)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             CcchhHHHHHHH
Confidence            998865544433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.95  E-value=0.26  Score=38.61  Aligned_cols=247  Identities=10%  Similarity=0.097  Sum_probs=137.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcc
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPDHEGWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEMKMGE  102 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  102 (365)
                      |..++.++.+.+++..|...+.++    .+..+|..+...+....+..-|.. ....+..   ++.-.......+...|.
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~~~~l~~~~e~~la~i-~~~~~~~---~~d~l~~~v~~ye~~~~  114 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQM-CGLHIVV---HADELEELINYYQDRGY  114 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHH-TTTTTTT---CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHHHHHHHhCcHHHHHHH-HHHHhhc---CHHHHHHHHHHHHHcCC
Confidence            455667778888888888877655    347799998888887766544322 1111122   34444567778888999


Q ss_pred             hHHHHHHHHHHHhhhhcCChhhHHHHHHHHHHHHHhccccchhHHHHHHHHHHhc-cCCCc-----hhHHHHHHHHHHHH
Q 036703          103 VDRARNVYECAVEIFLADDHDEAEQLFVAFAKFEEMGCNCKETDRARCIYKFALD-RIPKG-----RAEDLYRKFLAFEK  176 (365)
Q Consensus       103 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~p~~-----~~~~~~~~~~~~~~  176 (365)
                      +++...+++.++.. .+.+    ..++..++..+.   +.+ .++-.+.+++.-. .++..     ....+|..++.++.
T Consensus       115 ~e~Li~~Le~~~~~-~~~~----~~~~~~L~~lya---k~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~  185 (336)
T d1b89a_         115 FEELITMLEAALGL-ERAH----MGMFTELAILYS---KFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD  185 (336)
T ss_dssp             HHHHHHHHHHHTTS-TTCC----HHHHHHHHHHHH---TTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcC-Cccc----hHHHHHHHHHHH---HhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHH
Confidence            99999999999877 6666    778888888887   543 4455555544311 11110     01345667777777


Q ss_pred             HcCCchhhhHHHHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHH
Q 036703          177 QYGDREGIEDAIAGKM-----RLQYEDGVRKNPMNYDTWFDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIY  251 (365)
Q Consensus       177 ~~~~~~~~~~~~~~~a-----~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~  251 (365)
                      +.|..+.+-...++..     ...|...+.. ..|++.|...+..+... +++-...++.......|...          
T Consensus       186 ~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k-~~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~~d~~r----------  253 (336)
T d1b89a_         186 KYEEYDNAIITMMNHPTDAWKEGQFKDIITK-VANVELYYRAIQFYLEF-KPLLLNDLLMVLSPRLDHTR----------  253 (336)
T ss_dssp             HTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH-CSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGGCCHHH----------
T ss_pred             hcCCHHHHHHHHHHcchhhhhHHHHHHHHHc-cCChHHHHHHHHHHHHc-CHHHHHHHHHHhccCCCHHH----------
Confidence            7887664222211110     0111111111 12334444444444332 23333333333333332221          


Q ss_pred             HHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHH
Q 036703          252 LWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCR  311 (365)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  311 (365)
                          ..... ...++..-....++.....        ....+...++.++...++++.-+
T Consensus       254 ----~V~~~-~k~~~l~li~p~Le~v~~~--------n~~~vn~al~~lyie~~d~~~l~  300 (336)
T d1b89a_         254 ----AVNYF-SKVKQLPLVKPYLRSVQNH--------NNKSVNESLNNLFITEEDYQALR  300 (336)
T ss_dssp             ----HHHHH-HHTTCTTTTHHHHHHHHTT--------CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ----HHHHH-HhcCCcHHHHHHHHHHHHc--------ChHHHHHHHHHHHhCcchhHHHH
Confidence                11111 2445555566666554443        22468889999999998865433

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.59  Score=38.31  Aligned_cols=288  Identities=9%  Similarity=0.006  Sum_probs=148.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhhCCC-hH---HHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Q 036703           23 WNNYIRMEENLGNVAGARQIFERWMHWMPD-HE---GWLSYIKFKLRYNEVQRARHIFERLVQCHPYNLSAWINFADFEM   98 (365)
Q Consensus        23 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~   98 (365)
                      |..+-.+....++...  .-+...++.+|+ +.   +-..+.......++.+.....+    ...|.+...-+.++....
T Consensus        40 Yl~~~~l~~~~~~~~~--~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~  113 (450)
T d1qsaa1          40 YLEYRQITDDLMNQPA--VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKW  113 (450)
T ss_dssp             HHHHHHHHHTGGGCCH--HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCH--HHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHH
Confidence            4444444433332222  234556777888 32   2333444555666665544333    346778888888899999


Q ss_pred             hhcchHHHHHHHHHHHhhhhcCChhh--------------HHHHHHHHHHHHHhccccchhHHHHHHHHHHhccCCCchh
Q 036703           99 KMGEVDRARNVYECAVEIFLADDHDE--------------AEQLFVAFAKFEEMGCNCKETDRARCIYKFALDRIPKGRA  164 (365)
Q Consensus        99 ~~~~~~~A~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  164 (365)
                      ..|+.+.|......+-.. ....+..              ++..+...+....   ..|++..|..++..    .|... 
T Consensus       114 ~~g~~~~a~~~~~~lW~~-~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l---~~~~~~~a~~l~~~----l~~~~-  184 (450)
T d1qsaa1         114 NTGQSEEAWQGAKELWLT-GKSQPNACDKLFSVWRASGKQDPLAYLERIRLAM---KAGNTGLVTVLAGQ----MPADY-  184 (450)
T ss_dssp             HTTCHHHHHHHHHHHHSC-SSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHH---HTTCHHHHHHHHHT----CCGGG-
T ss_pred             HcCChHHHHHHHHHHHhc-CCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCChhhHHHHHhh----CChhH-
Confidence            999999988877776654 3222000              1122222333333   45556655555432    23221 


Q ss_pred             HHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCchh
Q 036703          165 EDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDT--WFDYIRLEERVGNQERVREVYERAIANVPPAEE  242 (365)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  242 (365)
                      ..+......+...   +.            .+.......|.+...  ....+..-....+.+.|...+.......+.+..
T Consensus       185 ~~~~~a~~~l~~~---p~------------~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~  249 (450)
T d1qsaa1         185 QTIASAIISLANN---PN------------TVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNED  249 (450)
T ss_dssp             HHHHHHHHHHHHC---GG------------GHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHhC---hH------------hHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHH
Confidence            2222222222211   11            011112223333221  122222223446788888888887766555432


Q ss_pred             hhHHHHhHHHHHHHHHHHhhccCChhHHHHHHHHHHhccccCCCcchhHHHHHHHHHHHHHhCCCccHHHHHHHHHhhCc
Q 036703          243 KRYWQRYIYLWINYALYKEVDAGDLERTRDVYRTLFIFYFSFSPRMEERRIFKKYIEMELCLGNIDPCRKLYEKYLEWSP  322 (365)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  322 (365)
                      ..     ......++... ...+..+.+...+.......       .+.....-.+......++...+...+..+.....
T Consensus       250 ~~-----~~~~~~~a~~~-~~~~~~~~a~~~~~~~~~~~-------~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~  316 (450)
T d1qsaa1         250 QI-----QELRDIVAWRL-MGNDVTDEQAKWRDDAIMRS-------QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK  316 (450)
T ss_dssp             HH-----HHHHHHHHHTS-CSTTCCHHHHHHHHHHHHTC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG
T ss_pred             HH-----HHHHHHHHHHH-HHcCchHHHHHHHHhhcccc-------cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccc
Confidence            10     11222222221 24456677777776665543       2222322333344566788888887776543322


Q ss_pred             chHHHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703          323 ENCYAWSKYTELEKSLDETERARAIFELAIA  353 (365)
Q Consensus       323 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  353 (365)
                      ......+-.|..+...|+.+.|...|..+..
T Consensus       317 ~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         317 EKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            3345556777888888999999988888764

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=91.86  E-value=0.43  Score=30.81  Aligned_cols=62  Identities=10%  Similarity=0.102  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhcCc
Q 036703          294 FKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIAQP  355 (365)
Q Consensus       294 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  355 (365)
                      .....++....|+-++-.+++...++...-++.+...++..+.+.|+..++.+++.+|.+..
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            33444556678888888888888887666689999999999999999999999999998764

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=91.72  E-value=2.8  Score=34.09  Aligned_cols=297  Identities=10%  Similarity=-0.013  Sum_probs=155.1

Q ss_pred             CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhh---CCC----------------hHHHHHHHHHHHHhccHHHHHHHH
Q 036703           16 SPRVDQLWNNYIRMEENLGNVAGARQIFERWMHW---MPD----------------HEGWLSYIKFKLRYNEVQRARHIF   76 (365)
Q Consensus        16 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~----------------~~~~~~~~~~~~~~~~~~~A~~~~   76 (365)
                      .|.+...-..++......|+.+.|......+...   .|+                ...+...+......|++..|..++
T Consensus        98 ~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~  177 (450)
T d1qsaa1          98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLA  177 (450)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHH
Confidence            4666677777788888888888887777666542   222                111222333334445555555443


Q ss_pred             HH-------------HHHhC-----------CcchHH--HHHHHHHHHhhcchHHHHHHHHHHHhhhhcCChhhHHHHHH
Q 036703           77 ER-------------LVQCH-----------PYNLSA--WINFADFEMKMGEVDRARNVYECAVEIFLADDHDEAEQLFV  130 (365)
Q Consensus        77 ~~-------------~l~~~-----------p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  130 (365)
                      ..             .+..+           |.++..  ....+..-....+.+.|...+...... .+...........
T Consensus       178 ~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~-~~~~~~~~~~~~~  256 (450)
T d1qsaa1         178 GQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQA-QQLNEDQIQELRD  256 (450)
T ss_dssp             HTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-TTCCHHHHHHHHH
T ss_pred             hhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhc-ccccHHHHHHHHH
Confidence            32             01111           211111  111222222234666777777766665 5444111222222


Q ss_pred             HHHHHHHhccccchhHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHHHHHHcCCCCHHHH
Q 036703          131 AFAKFEEMGCNCKETDRARCIYKFALDRIPKGRAEDLYRKFLAFEKQYGDREGIEDAIAGKMRLQYEDGVRKNPMNYDTW  210 (365)
Q Consensus       131 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~~~~  210 (365)
                      .++....   ..+..+.+...+............. -|  .+......++..        .+...+...-..........
T Consensus       257 ~~a~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~-~w--~~~~al~~~~~~--------~~~~~~~~l~~~~~~~~r~~  322 (450)
T d1qsaa1         257 IVAWRLM---GNDVTDEQAKWRDDAIMRSQSTSLI-ER--RVRMALGTGDRR--------GLNTWLARLPMEAKEKDEWR  322 (450)
T ss_dssp             HHHHTSC---STTCCHHHHHHHHHHHHTCCCHHHH-HH--HHHHHHHHTCHH--------HHHHHHHHSCTTGGGSHHHH
T ss_pred             HHHHHHH---HcCchHHHHHHHHhhcccccchHHH-HH--HHHHHHHcCChH--------HHHHHHHhcCcccccHHHHH
Confidence            3333333   4566677777777666544433211 12  222233445543        34444443221111234556


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCchhhhHHHHhHHHHHHHHHHHhhccCCh-hHHHHHHHHHHhccccCCCcch
Q 036703          211 FDYIRLEERVGNQERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYKEVDAGDL-ERTRDVYRTLFIFYFSFSPRME  289 (365)
Q Consensus       211 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~a~~~~~~~~~~~~  289 (365)
                      +-+|..+...|+.+.|...|..+... ++            .+-.++.-   ..|.. .-..    ..+...+.  ...+
T Consensus       323 YW~gRa~~~~G~~~~A~~~~~~~a~~-~~------------fYG~LAa~---~Lg~~~~~~~----~~~~~~~~--~~~~  380 (450)
T d1qsaa1         323 YWQADLLLERGREAEAKEILHQLMQQ-RG------------FYPMVAAQ---RIGEEYELKI----DKAPQNVD--SALT  380 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTS-CS------------HHHHHHHH---HTTCCCCCCC----CCCCSCCC--CHHH
T ss_pred             HHHHHHHHHcCChhhHHHHHHHHhcC-CC------------hHHHHHHH---HcCCCCCCCc----CCCCccHH--Hhhh
Confidence            78889999999999999999998753 33            21112211   22211 0000    00000000  0001


Q ss_pred             h-HHHHHHHHHHHHHhCCCccHHHHHHHHHhhCcchHHHHHHHHHHHhhccchhHHHHHHHHHhc
Q 036703          290 E-RRIFKKYIEMELCLGNIDPCRKLYEKYLEWSPENCYAWSKYTELEKSLDETERARAIFELAIA  353 (365)
Q Consensus       290 ~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  353 (365)
                      . +.+  ..+..+...|....|+..+..++...+  ..-...++.+..+.|.++.|+....++-.
T Consensus       381 ~~~~~--~ra~~L~~~g~~~~A~~e~~~l~~~~~--~~~~~~la~lA~~~g~~~~aI~a~~~~~~  441 (450)
T d1qsaa1         381 QGPEM--ARVRELMYWNLDNTARSEWANLVKSKS--KTEQAQLARYAFNNQWWDLSVQATIAGKL  441 (450)
T ss_dssp             HSHHH--HHHHHHHHTTCHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             cChHH--HHHHHHHHcCCchHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence            1 222  335556688999999999999998864  44555778999999999999988877643